BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002054
(974 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359488677|ref|XP_002273777.2| PREDICTED: polyribonucleotide nucleotidyltransferase-like [Vitis
vinifera]
Length = 964
Score = 1524 bits (3947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/980 (77%), Positives = 841/980 (85%), Gaps = 25/980 (2%)
Query: 1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK 60
M+++A++ +PLL +LP +LTWR+L +RTICSG LGFA P+ P V G KVLETFK
Sbjct: 1 MAAMASRRNPLLTSLPLYLTWRSLRYRTICSGHLGFASSSPSISEQIP-VPGMKVLETFK 59
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
EEFEIGSR IT ETGKIARFANGAVV+ MDETKVLSTV SSKGD+ RDFLPLTVDYQEK
Sbjct: 60 EEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDAARDFLPLTVDYQEKH 119
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
FAQGVIP T+MRREGAP+ERELL GR+IDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD
Sbjct: 120 FAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 179
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+MAANATSAALMLSDIPWGGPIG+IRIGRICGQFIVNP+MDELSLSDLNLVYACTR+KTL
Sbjct: 180 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACTRDKTL 239
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQAREISEKDLEA LRLAHPEAV+YLEPQIRLA +AGK KKEY LSM+S+ T EKV
Sbjct: 240 MIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDITFEKVR 299
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
NLAEA IEAVFTD +Y KFERGEALD I QDVK+ALEEECDEESL+VLPK VDTVRK V+
Sbjct: 300 NLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTVRKEVV 359
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+RIIAEG+RVDGR L+EVRP+YCESGNLPILHGSSLFSRGDTQVLCTVTLGAP +AQRL
Sbjct: 360 RRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRL 419
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SLVGPPTKRFMLHYSFPPF INEVGKRVGLNRREVGHGTLAEKALLAVLPPE +FPYTV
Sbjct: 420 DSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEEFPYTV 479
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+NSEVMASDGSTSMATVCGGSMALMDAGIPL+EHVAG+SVGLV+EVDPST IKDYRIL
Sbjct: 480 RINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRIL 539
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICECLE A +GRLQILD ME
Sbjct: 540 TDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRME 599
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
+EI+APRTQ RNSPRLATLK+ ND+LRRL+GP+GALKRKIEEETG RISVSDGTLTVVA
Sbjct: 600 QEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSDGTLTVVA 659
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
KN+SVM+KV EKVDFI+GREIE+GGIYKGVVTSVKEYGAFVEFNGGQQGLLH+SELSHEP
Sbjct: 660 KNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHISELSHEP 719
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
V RVSDVVS+GQQ+SL CIGQDVRGNIKLSLK+ PRP +D VVEGS+P+ KQA VW
Sbjct: 720 VVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRPGSDTNNVVEGSIPITKQAPSVW 779
Query: 781 ASVGDV------SNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQS 834
AS+GDV N ELP+ K+ET + TS P+ LIRSAAECDEEEK++GF+QS
Sbjct: 780 ASIGDVPDSEEKQNSDLEELPVAKDETSEGSLPTSKLPSFLIRSAAECDEEEKSAGFNQS 839
Query: 835 SKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDN 894
S++T K S SN K K Q+D + ++F+ + +L D
Sbjct: 840 SRNTSKPRSISGSNDKLKTSPPQND-----GDKHGSAFNANSQNDL-----------NDT 883
Query: 895 KGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFE-NNEKKDFVVGDE 953
K E AKNLKLG K+ AKVYQ+R GLVLDLGGGIRGMYRFE +N+K+DF VGDE
Sbjct: 884 KEVP-ETCTGAKNLKLGMKLNAKVYQIRTHGLVLDLGGGIRGMYRFEGDNDKRDFKVGDE 942
Query: 954 LLVKCSSFTGKGIPVVSLVD 973
L V CSSF+ KGIPV+SLV+
Sbjct: 943 LHVMCSSFSTKGIPVMSLVE 962
>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
Length = 961
Score = 1509 bits (3906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/975 (77%), Positives = 839/975 (86%), Gaps = 24/975 (2%)
Query: 5 ATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFKEEFE 64
A++++PLLN+LP FLTWR+LGFRTICSGRLGFAP +P P P S AGTK LETF+EEFE
Sbjct: 3 ASRSNPLLNSLPRFLTWRSLGFRTICSGRLGFAPSDPDPEPPV-STAGTKFLETFREEFE 61
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 124
IGSRLIT ETGKIARFANG+VVLGM+ETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG
Sbjct: 62 IGSRLITFETGKIARFANGSVVLGMEETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 121
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
VIP+TY+RREGAPKERELL GR+IDRPIRPLFPAGFYHEVQVMASVLSSDG++DPD+MAA
Sbjct: 122 VIPSTYLRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGRRDPDVMAA 181
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
NATSAALMLSDIPWGGPIG+IRIGRICGQF+VNPTMDELSLSDLNLVYACT++KTLMIDV
Sbjct: 182 NATSAALMLSDIPWGGPIGVIRIGRICGQFVVNPTMDELSLSDLNLVYACTKDKTLMIDV 241
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
QA I+EKDLEAGLRLAHPEAVKYLEPQIRLA KAGK KK+YKLS++S++TLEKV NL E
Sbjct: 242 QAGGIAEKDLEAGLRLAHPEAVKYLEPQIRLAAKAGKHKKDYKLSLVSDRTLEKVRNLTE 301
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRI 364
A IEAVFTDPSY KFERGEALD I Q+ K+ LEEECD ESL VL K VD VRK V+R RI
Sbjct: 302 AKIEAVFTDPSYGKFERGEALDNIAQEAKRTLEEECDTESLTVLSKVVDRVRKGVVRNRI 361
Query: 365 IAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV 424
IAEG RVDGR+LDEVRP+YCE+G LP LHGSSLFSRGDTQVLCTVTLGAP +AQRL+SLV
Sbjct: 362 IAEGFRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLV 421
Query: 425 GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNS 484
GPPTKRFMLHYSFPPF INEVGKRVGLNRREVGHGTLAEKALLAVLPPE+DFPYTVR+NS
Sbjct: 422 GPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDDFPYTVRINS 481
Query: 485 EVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDIL 544
EVMASDGSTSMATVCGGS+A+MDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI+TDIL
Sbjct: 482 EVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIVTDIL 541
Query: 545 GLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREIS 604
GLEDHLGDMDFKIAGTR GVTA+QLDIKPAGIPLDIICECLE A KGRLQIL M++EIS
Sbjct: 542 GLEDHLGDMDFKIAGTRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQILARMDQEIS 601
Query: 605 APRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRS 664
APRTQD RNSPRLATLK+ ND LRRLIGPLG LKRKIEE+TG R+SVSD TLT++AKN++
Sbjct: 602 APRTQDHRNSPRLATLKFSNDALRRLIGPLGVLKRKIEEDTGARMSVSDETLTILAKNQT 661
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
V+E+V EK+DFIIGREIEVGGIYKG+V+S+KEYGAFVEFNGGQQGLLHVSELSHEPVS++
Sbjct: 662 VLERVQEKIDFIIGREIEVGGIYKGIVSSIKEYGAFVEFNGGQQGLLHVSELSHEPVSKI 721
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVWASVG 784
SDV+SVGQQLSL CIGQDVRGNIKLSLKA P+ ++ V E VPV K+A VW SVG
Sbjct: 722 SDVISVGQQLSLMCIGQDVRGNIKLSLKATLPQLKSKKNNVTEEPVPVIKEAPKVWTSVG 781
Query: 785 DVSNGQ------NPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKST 838
++ N Q + EL + ++ V STSS P LIRSAAECDEE+K +Q SKS
Sbjct: 782 NLPNEQEEQKLTDAELMLSRST---VKPSTSSNPGFLIRSAAECDEEDKTVSLNQGSKSN 838
Query: 839 LKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDNKGTR 898
K+ A+K + K K +SD S S+ S + L DED K
Sbjct: 839 SKTLRATKRDRKRKTKVPESD--DSDASIYSSGHSSHTVDRL---------NDEDAK--- 884
Query: 899 VEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKC 958
V + +SAK+LKLG K+AAKVYQ+RA GLVLDLG G+RGMYRFE N K+DF +GDELLVKC
Sbjct: 885 VVSPLSAKSLKLGMKIAAKVYQIRALGLVLDLGNGVRGMYRFETNGKRDFEIGDELLVKC 944
Query: 959 SSFTGKGIPVVSLVD 973
+SF+ KG+PV+SLVD
Sbjct: 945 TSFSSKGLPVMSLVD 959
>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 958
Score = 1478 bits (3827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/976 (76%), Positives = 840/976 (86%), Gaps = 23/976 (2%)
Query: 1 MSSLA-TKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETF 59
MS++A +K +PL+N+LP FLT R+ FRTICSGRLGFAP P P VAGTKVLETF
Sbjct: 1 MSAIARSKANPLVNSLPRFLTRRSFNFRTICSGRLGFAPSYPDRP-----VAGTKVLETF 55
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
KEEFEIGS++I+LETG+IARFANGAVVL MD+TKVLSTVTSSKGD+VRDFLPLTVDYQEK
Sbjct: 56 KEEFEIGSQVISLETGEIARFANGAVVLSMDQTKVLSTVTSSKGDAVRDFLPLTVDYQEK 115
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
QFAQGVIPNT+MRREGAPKERELL GR+IDRPIRPLF GFYHEVQVMASVLSSDGKQDP
Sbjct: 116 QFAQGVIPNTFMRREGAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMASVLSSDGKQDP 175
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D+MAANATSAALMLSDIPWGGPIG+IRIGRI GQFIVNPTMDELSLSDLNLVYACT++KT
Sbjct: 176 DVMAANATSAALMLSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSDLNLVYACTKDKT 235
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LMIDVQAREISEKDLEA LRLAHPEAVKYLEPQIRLA KAGK KK+YKLSM+SE+ LEKV
Sbjct: 236 LMIDVQAREISEKDLEAALRLAHPEAVKYLEPQIRLAAKAGKDKKDYKLSMVSERILEKV 295
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
NLAE IEAVFTD SY KFERGEALD I QDVK+ LEEECDEESL VL KAVDTVRK+V
Sbjct: 296 RNLAETQIEAVFTDSSYGKFERGEALDNITQDVKRTLEEECDEESLNVLRKAVDTVRKQV 355
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+RII+EG RVDGR+LDEVRP++C++G LPILHGSSLF+RGDTQVLCTVTLGAP +AQR
Sbjct: 356 VRRRIISEGFRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQR 415
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
LESLVGPPTKRFMLHYSFPPF INEVGKRVGLNRREVGHGTLAEKALLAVLPPE+DFPYT
Sbjct: 416 LESLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDDFPYT 475
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VR+NSEVMASDGSTSMATVCGGSMALMDAGIPL+EHVAGVSVGLVSEVDPSTGEIKDYR+
Sbjct: 476 VRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDPSTGEIKDYRV 535
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDIICECL+HA KGRLQILDHM
Sbjct: 536 LTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICECLDHALKGRLQILDHM 595
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVV 659
E+EI+ PRTQ D+ PRLAT K+ NDTLR+LIGPLG LKRKIEEETG R+S+SDG LTV
Sbjct: 596 EQEINVPRTQVDKTRPRLATFKFSNDTLRQLIGPLGVLKRKIEEETGARLSISDGMLTVG 655
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
AKN++VM+KV EK+DFIIG EIE GG+YKG+VTS+KEYGAF++FNGGQQGLLH+SELSHE
Sbjct: 656 AKNQAVMDKVQEKIDFIIGCEIETGGVYKGIVTSIKEYGAFIQFNGGQQGLLHISELSHE 715
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDV 779
PVS+VSDVVSVGQQLSL CIGQDVRGNIKLSLKA SP ++ + EGSVPV K+ V
Sbjct: 716 PVSKVSDVVSVGQQLSLMCIGQDVRGNIKLSLKATSPPLGSNTNIMEEGSVPVTKELPKV 775
Query: 780 WASVGDVSNGQNPELPMRKN--ETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKS 837
WASV +VS+G++ + P + ++ VN STSS PA LIRS AECDEEEK + ++ S +
Sbjct: 776 WASVENVSDGRDEQKPTAEFPLDSSMVNFSTSSAPAFLIRSIAECDEEEKDASLNRDSNN 835
Query: 838 TLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDEDNKGT 897
K +K + K K T+ + S + + S S S + + +N
Sbjct: 836 APKILWTAKRDHKLK--TNPPKYDSHSPVPNSNSLSHTKNK-------------LNNVEN 880
Query: 898 RVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVK 957
VE+ ++A+NLKLGTKVAAKVYQ+R GLVLDLGG +RGM+RFE N K+DF VGDEL VK
Sbjct: 881 EVESPINARNLKLGTKVAAKVYQIRKHGLVLDLGGEVRGMFRFEENGKRDFEVGDELRVK 940
Query: 958 CSSFTGKGIPVVSLVD 973
C++F+ KGIPV+SLVD
Sbjct: 941 CTNFSSKGIPVMSLVD 956
>gi|449515386|ref|XP_004164730.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase 2, mitochondrial-like [Cucumis
sativus]
Length = 955
Score = 1431 bits (3703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/981 (72%), Positives = 814/981 (82%), Gaps = 33/981 (3%)
Query: 1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK 60
M+S+ATK +PL + +P FLTWR+LGFRTIC GR+GF+ P ++ TKVLETF+
Sbjct: 1 MASMATKANPLFSTIPHFLTWRSLGFRTICCGRMGFSSQSQQQVDPNTTLGRTKVLETFE 60
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
E FEIGSRL+ LETGKIARFANGA VLG++ETKVLSTV S+KGD+ RDFLPLTVDYQEKQ
Sbjct: 61 EVFEIGSRLVKLETGKIARFANGAAVLGIEETKVLSTVASAKGDAARDFLPLTVDYQEKQ 120
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
FAQGVIP T+ RREGAPKERELL GRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD
Sbjct: 121 FAQGVIPGTFTRREGAPKERELLCGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+MAANATSAALMLSDIPWGGPIG+IRIGRI GQF+VNPTMDEL+LSDLNL+YACTREKTL
Sbjct: 181 VMAANATSAALMLSDIPWGGPIGVIRIGRIDGQFVVNPTMDELNLSDLNLIYACTREKTL 240
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQAREI+EKDLEAGLRLAHPEAVK+LEPQIRLA KAGK KKEYKLSM+S+ TLEKV+
Sbjct: 241 MIDVQAREITEKDLEAGLRLAHPEAVKFLEPQIRLAAKAGKLKKEYKLSMVSDSTLEKVA 300
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE+ IEAVFTDPSY KFERGEAL+KI +DVKK EEEC EE L+VLPKAVD VRK+V+
Sbjct: 301 KLAESPIEAVFTDPSYGKFERGEALEKITEDVKKVFEEECYEEGLKVLPKAVDYVRKKVV 360
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+RIIAEG R+DGR+LDEVRP+YCES LPILHGSS+FSRGDTQVLCTVTLGAPA+AQ L
Sbjct: 361 RRRIIAEGRRLDGRRLDEVRPLYCESSYLPILHGSSIFSRGDTQVLCTVTLGAPADAQHL 420
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SLVGPPTKRFMLHYSFPPF INEVGKR GLNRREVGHGTLAEKALLAVLPPE++FPY V
Sbjct: 421 DSLVGPPTKRFMLHYSFPPFSINEVGKRGGLNRREVGHGTLAEKALLAVLPPESEFPYAV 480
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+NSEVMASDGSTSMATVCGGSMALMDAG+PL EHVAGVSVGLVSE DPSTG IKDYRIL
Sbjct: 481 RINSEVMASDGSTSMATVCGGSMALMDAGVPLNEHVAGVSVGLVSETDPSTGAIKDYRIL 540
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDIICE LEHA KGR QILDHME
Sbjct: 541 TDILGLEDHLGDMDFKIAGTRKGVTAIQLDIKPAGIPLDIICESLEHARKGRWQILDHME 600
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
REI+APR +DD N PRL TLKY N+ LRRLIGPLG +K+KIE ETG RISV DGTLT++A
Sbjct: 601 REINAPRMKDDENCPRLVTLKYTNEALRRLIGPLGIVKKKIEAETGARISVGDGTLTILA 660
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
KN++VME V ++VDF +GREIE+GG YKGVV+SVKEYGAF+EFNGGQQGLLH+SELSH+P
Sbjct: 661 KNQAVMENVQDRVDFTLGREIEIGGTYKGVVSSVKEYGAFIEFNGGQQGLLHISELSHDP 720
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
VSRVSD+VSVGQ++SLRCIGQDV GNIKLSLKA+ P P+A KG SV + +
Sbjct: 721 VSRVSDIVSVGQKISLRCIGQDVHGNIKLSLKALLPVPKA--KGPNGNSV----SSLESL 774
Query: 781 ASVGDVSNGQNPELPMRKNETPGVN-------SSTSSTPAVLIRSAAECDEEEKASGFSQ 833
SVG+V Q P+ + P V+ + TSS P+VLIRSA +CD EEK S +Q
Sbjct: 775 PSVGEVYKTQ-PKTQNSTSNIPAVDKGVGSEVNPTSSVPSVLIRSAEDCDVEEKKSAVNQ 833
Query: 834 SSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDED 893
+K+T K SKS+ + +K+ R + L + D +
Sbjct: 834 ETKNTRKLKTTSKSDE------------NCDEEEKNLLLRNRNSKPLTQ-------NDVN 874
Query: 894 NKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDE 953
N V+ ++ NL++GTKV AK+YQ+R GLVLDLGGG+RGMYRFE + + ++ VGDE
Sbjct: 875 NNEVEVQDPLTPSNLRIGTKVKAKIYQIRLHGLVLDLGGGVRGMYRFEGDNQSNYKVGDE 934
Query: 954 LLVKCSSFTGKGIPVVSLVDS 974
L V+CSSF+G+GIPV+SLV++
Sbjct: 935 LHVQCSSFSGRGIPVMSLVNN 955
>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
Length = 905
Score = 1427 bits (3694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/937 (76%), Positives = 785/937 (83%), Gaps = 52/937 (5%)
Query: 54 KVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
KVLETFKEEFEIGSR IT ETGKIARFANGAVV+ MDETKVLSTV SSKGD+ RDFLPLT
Sbjct: 2 KVLETFKEEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDAARDFLPLT 61
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDYQEK FAQGVIP T+MRREGAP+ERELL GR+IDRPIRPLFPAGFYHEVQVMASVLSS
Sbjct: 62 VDYQEKHFAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSS 121
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DGKQDPD+MAANATSAALMLSDIPWGGPIG+IRIGRICGQFIVNP+MDELSLSDLNLVYA
Sbjct: 122 DGKQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYA 181
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
CTR+KTLMIDVQAREISEKDLEA LRLAHPEAV+YLEPQIRLA +AGK KKEY LSM+S+
Sbjct: 182 CTRDKTLMIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSD 241
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
T EKV NLAEA IEAVFTD +Y KFERGEALD I QDVK+ALEEECDEESL+VLPK VD
Sbjct: 242 ITFEKVRNLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVD 301
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
TVRK V+R+RIIAEG+RVDGR L+EVRP+YCESGNLPILHGSSLFSRGDTQVLCTVTLGA
Sbjct: 302 TVRKEVVRRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 361
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
P +AQRL+SLVGPPTKRFMLHYSFPPF INEVGKRVGLNRREVGHGTLAEKALLAVLPPE
Sbjct: 362 PGDAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 421
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYTVR+NSEVMASDGSTSMATVCGGSMALMDAGIPL+EHVAG+SVGLV+EVDPST
Sbjct: 422 EEFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNT 481
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
IKDYRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICECLE A +GRL
Sbjct: 482 IKDYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRL 541
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
QILD ME+EI+APRTQ RNSPRLATLK+ ND+LRRL+GP+GALKRKIEEETG RISVSD
Sbjct: 542 QILDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSD 601
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GTLTVVAKN+SVM+KV EKVDFI+GREIE+GGIYKGVVTSVKEYGAFVEFNGGQQGLLH+
Sbjct: 602 GTLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHI 661
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVN 773
SELSHEPV RVSDVVS+GQQ+SL CIGQDVRGNIKLSLK+ PRP +D VVEGS+P+
Sbjct: 662 SELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRPGSDTNNVVEGSIPIT 721
Query: 774 KQATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQ 833
KQA VWAS+GDV D EEK + +
Sbjct: 722 KQAPSVWASIGDVP-----------------------------------DSEEKQNSDLE 746
Query: 834 SSKSTLKSTLASKSNSKPKKFTSQSDFF-SSTNIQKSTSFSQRERE--ELAECLFGTEDG 890
S++T K S SN K K Q+ S+ N++KS SQ+E++ + L EDG
Sbjct: 747 DSRNTSKPRSISGSNDKLKTSPPQNGMSDSAKNVKKSKISSQKEKDINSIFTILSMGEDG 806
Query: 891 DEDNKGTRV-------------EAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGM 937
D+ E AKNLKLG K+ AKVYQ+R GLVLDLGGGIRGM
Sbjct: 807 DKHGSAFNANSQNDLNDTKEVPETCTGAKNLKLGMKLNAKVYQIRTHGLVLDLGGGIRGM 866
Query: 938 YRFE-NNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
YRFE +N+K+DF VGDEL V CSSF+ KGIPV+SLV+
Sbjct: 867 YRFEGDNDKRDFKVGDELHVMCSSFSTKGIPVMSLVE 903
>gi|449446674|ref|XP_004141096.1| PREDICTED: polyribonucleotide nucleotidyltransferase 2,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 1421 bits (3678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/1046 (68%), Positives = 824/1046 (78%), Gaps = 86/1046 (8%)
Query: 1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK 60
M+S+ATK +PL + +P FLTWR+LGFRTIC GR+GF+ P ++ TKVLETF+
Sbjct: 1 MASMATKANPLFSTIPHFLTWRSLGFRTICCGRMGFSSQSQQQVDPNTTLGRTKVLETFE 60
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
E FEIGSRL+ LETGKIARFANGA VLG++ETKVLSTV S+KGD+ RDFLPLTVDYQEKQ
Sbjct: 61 EVFEIGSRLVKLETGKIARFANGAAVLGIEETKVLSTVASAKGDAARDFLPLTVDYQEKQ 120
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
FAQGVIP T+ RREGAPKERELL GRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD
Sbjct: 121 FAQGVIPGTFTRREGAPKERELLCGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+MAANATSAALMLSDIPWGGPIG+IRIGRI GQF+VNPTMDEL+LSDLNL+YACTREKTL
Sbjct: 181 VMAANATSAALMLSDIPWGGPIGVIRIGRIDGQFVVNPTMDELNLSDLNLIYACTREKTL 240
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQAREI+EKDLEAGLRLAHPEAVK+LEPQIRLA KAGK KKEYKLSM+S+ TLEKV+
Sbjct: 241 MIDVQAREITEKDLEAGLRLAHPEAVKFLEPQIRLAAKAGKLKKEYKLSMVSDSTLEKVA 300
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE+ IEAVFTDPSY KFERGEAL+KI +DVKK EEEC EE L+VLPKAVD VRK+V+
Sbjct: 301 KLAESPIEAVFTDPSYGKFERGEALEKITEDVKKVFEEECYEEGLKVLPKAVDYVRKKVV 360
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+RIIAEG R+DGR+LDEVRP+YCES LPILHGSS+FSRGDTQVLCTVTLGAPA+AQ L
Sbjct: 361 RRRIIAEGRRLDGRRLDEVRPLYCESSYLPILHGSSIFSRGDTQVLCTVTLGAPADAQHL 420
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SLVGPPTKRFMLHYSFPPF INEVGKR GLNRREVGHGTLAEKALLAVLPPE++FPY V
Sbjct: 421 DSLVGPPTKRFMLHYSFPPFSINEVGKRGGLNRREVGHGTLAEKALLAVLPPESEFPYAV 480
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+NSEVMASDGSTSMATVCGGSMALMDAG+PL EHVAGVSVGLVSE DPSTG IKDYRIL
Sbjct: 481 RINSEVMASDGSTSMATVCGGSMALMDAGVPLNEHVAGVSVGLVSETDPSTGAIKDYRIL 540
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDIICE LEHA KGR QILDHME
Sbjct: 541 TDILGLEDHLGDMDFKIAGTRKGVTAIQLDIKPAGIPLDIICESLEHARKGRWQILDHME 600
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
REI+APR +DD N PRL TLKY N+ LRRLIGPLG +K+KIE ETG RISV DGTLT++A
Sbjct: 601 REINAPRMKDDENCPRLVTLKYTNEALRRLIGPLGIVKKKIEAETGARISVGDGTLTILA 660
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
KN++VME V ++VDF +GREIE+GG YKGVV+SVKEYGAF+EFNGGQQGLLH+SELSH+P
Sbjct: 661 KNQAVMENVQDRVDFTLGREIEIGGTYKGVVSSVKEYGAFIEFNGGQQGLLHISELSHDP 720
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
VSRVSD+VSVGQ++SLRCIGQDV GNIKLSLKA+ P P+A KG SV + +
Sbjct: 721 VSRVSDIVSVGQKISLRCIGQDVHGNIKLSLKALLPVPKA--KGPNGNSV----SSLESL 774
Query: 781 ASVGDVSNGQNPELPMRKNETPGVN-------SSTSSTPAVLIRSAAECDEEEKASGF-- 831
SVG+V Q P+ + P V+ + TSS P+VLIRSA +CD EEK S
Sbjct: 775 PSVGEVYKTQ-PKTQNSTSNIPAVDKGVGSEVNPTSSVPSVLIRSAEDCDVEEKKSAVKN 833
Query: 832 -------------------------------SQSSKSTLKSTLASKSN----------SK 850
Q + LK+T S N K
Sbjct: 834 LKLKNTQKLNNASTSDEDCDEEEKQSAVNNRKQKNTRKLKTTSKSDENCDEEEKKSAVKK 893
Query: 851 PKKFTSQSDFFSSTNIQ----------------------KSTSFSQREREELAECLFGTE 888
PK+ T+Q +ST+ + +TS S+ + + L +
Sbjct: 894 PKRKTTQKQNTASTSAEDCNEEEKKSAVGNLKLKSTKKLNATSRSKGQSKPLTQ------ 947
Query: 889 DGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDF 948
D +N V+ ++ NL++GTKV AK+YQ+R GLVLDLGGG+RGMYRFE + + ++
Sbjct: 948 -NDVNNNEVEVQDPLTPSNLRIGTKVKAKIYQIRLHGLVLDLGGGVRGMYRFEGDNQSNY 1006
Query: 949 VVGDELLVKCSSFTGKGIPVVSLVDS 974
VGDEL V+CSSF+G+GIPV+SLV++
Sbjct: 1007 KVGDELHVQCSSFSGRGIPVMSLVNN 1032
>gi|356573319|ref|XP_003554809.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like [Glycine
max]
Length = 959
Score = 1368 bits (3540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/999 (71%), Positives = 806/999 (80%), Gaps = 76/999 (7%)
Query: 7 KTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFKEEFEIG 66
+T+ LL LP FLTWRA FRT A TK LETF E+FEIG
Sbjct: 3 RTNTLLRTLPHFLTWRAFRFRTF---------------------ATTKHLETFTEQFEIG 41
Query: 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGV 125
S +ITLETGKIARFAN AVVL M+ T VLSTVT+SK D+VRDFLPLTVDYQEKQFAQGV
Sbjct: 42 SSVITLETGKIARFANAAVVLAMENTNVLSTVTASKANDAVRDFLPLTVDYQEKQFAQGV 101
Query: 126 IPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAAN 185
IP ++MRREGAP+ERELL GRIIDRPIRPLFP GFYHEVQVMASVLSSDGKQD D++AAN
Sbjct: 102 IPTSFMRREGAPRERELLCGRIIDRPIRPLFPPGFYHEVQVMASVLSSDGKQDTDVLAAN 161
Query: 186 ATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQ 245
ATSAALMLSDIPWGGPIGM+RIGRICGQFIVNPTMDEL LSDLNLVYACT++KTLMIDVQ
Sbjct: 162 ATSAALMLSDIPWGGPIGMVRIGRICGQFIVNPTMDELKLSDLNLVYACTKDKTLMIDVQ 221
Query: 246 AREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEA 305
AREIS+KDLEAGLRLAHPEAVKY+EPQIRLA KAGK KKEYKLSM+S+ T+EKV N+AEA
Sbjct: 222 AREISDKDLEAGLRLAHPEAVKYIEPQIRLAAKAGKSKKEYKLSMLSDNTMEKVRNIAEA 281
Query: 306 HIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRII 365
IEAVFT+PSY KFERGEAL+ I QDVK+ LEEE DEESL+VL KAVDTVRK+V+RKRII
Sbjct: 282 PIEAVFTNPSYGKFERGEALENIAQDVKRVLEEEGDEESLKVLSKAVDTVRKKVVRKRII 341
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
AEG R+DGRQLDEVRP+YCE+G + +LHGS+LFSRG+TQVLCTVTLGAP +AQRLES+VG
Sbjct: 342 AEGYRLDGRQLDEVRPLYCEAGYVSMLHGSALFSRGETQVLCTVTLGAPTDAQRLESVVG 401
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
PPTKRFMLHYSFPPFCINEVGKR GLNRREVGHGTLAEKALLAVLPPE+DFPYTVRVNSE
Sbjct: 402 PPTKRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYTVRVNSE 461
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
VMASDGSTSMATVCGGSMALMDAGIP++EHVAGVSVGLVSE+DPSTGEI DYRILTDILG
Sbjct: 462 VMASDGSTSMATVCGGSMALMDAGIPVREHVAGVSVGLVSELDPSTGEIADYRILTDILG 521
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
LEDHLGD+DFKIAGTR GVTAIQLDIKPAGIPLDI+CECLE AHK RLQILDHME+EI+
Sbjct: 522 LEDHLGDIDFKIAGTRKGVTAIQLDIKPAGIPLDIVCECLEPAHKARLQILDHMEQEINV 581
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSV 665
PR ++D SPRLATLKY+ND LRRLIGP+GALKRK+EEETG R+SV DGTLT+VAKN+SV
Sbjct: 582 PRNKNDSTSPRLATLKYNNDALRRLIGPMGALKRKMEEETGARMSVGDGTLTIVAKNQSV 641
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
M+K+LEK+DFI+GR+IEVGGIY G+VT++KEYGAFVEFNGGQQGLLH+SELSHEPVS+VS
Sbjct: 642 MDKILEKIDFIVGRQIEVGGIYTGIVTTIKEYGAFVEFNGGQQGLLHISELSHEPVSQVS 701
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA-DVKGVVEGSVPVNKQATDVWASVG 784
+VVSVGQ+LSL CIGQDV GNIKLSLKA SPRP + VE SV K+ ++WA VG
Sbjct: 702 EVVSVGQKLSLMCIGQDVHGNIKLSLKATSPRPGGLETNDAVEESVASAKETANIWAPVG 761
Query: 785 DVSNGQNP----ELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEE-------------- 826
+VS+ Q EL + E S TS P +LIRSAAECDEEE
Sbjct: 762 NVSSTQEQNSAHELSLGNLELGNAKSQTSQVPVILIRSAAECDEEEKSSSLNLSSKSPHV 821
Query: 827 --------KASGFSQSSKSTLKSTL-ASKSNSKP---KKFTSQSDFFSSTNIQKSTSFSQ 874
K+ SQ++KS + A S+S P KK S ++IQK +Q
Sbjct: 822 DNGVQLDRKSKSRSQNAKSRRSQDVDAPSSHSGPLPYKKSKPSMQKESKSDIQKPKGDAQ 881
Query: 875 REREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGI 934
+++ V+A++LKLGT+V AKV Q+RA GLVLDLGGG+
Sbjct: 882 EPKDK-----------------------VTAEDLKLGTQVTAKVSQIRAHGLVLDLGGGL 918
Query: 935 RGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
RGMYRFE N K+DF +GDE+ V CSSF+ KGIPV+S V+
Sbjct: 919 RGMYRFEENNKRDFKIGDEMRVVCSSFSSKGIPVLSFVN 957
>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
lyrata]
gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
lyrata]
Length = 992
Score = 1349 bits (3492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/1009 (68%), Positives = 807/1009 (79%), Gaps = 58/1009 (5%)
Query: 1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK 60
MSS+ + +LP FL WRALGFRTICSGRLGFAP P +P+ AGTK+LE+FK
Sbjct: 1 MSSIVNRARS--TSLPNFLAWRALGFRTICSGRLGFAPSNPD----SPASAGTKILESFK 54
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
EEFE+GSR+++ ETGKIARFANG+VVLGMD+TKVLSTVT +K DS RDFLPLTVDYQEKQ
Sbjct: 55 EEFEVGSRVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKTDSPRDFLPLTVDYQEKQ 114
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+AQG+IPNTYMRREGAPKERELL GR+IDRPIRPLFP+GFYHEVQ+MASVLSSDGKQDPD
Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDGKQDPD 174
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+AANA+SAALMLSD+PWGGPIG+IRIGRICGQF+VNPTMDELS SDLNL+YACTR+KT+
Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQ+REISEKDL A LRLAHPEA+KYL+PQIRLAEKAGKQKKEYKLSM+SE+TLEKV+
Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAIKYLDPQIRLAEKAGKQKKEYKLSMLSEKTLEKVT 294
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+LA IE+VFTDPSY KFERGEALD IG+DV+K EEE D+ESL +LPKAVDTVRK+V+
Sbjct: 295 DLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKKVV 354
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R+I++G RVDGR LDEVRPIYCES LP LHGS+LFSRGDTQVLCTVTLGAP EAQ L
Sbjct: 355 RSRMISDGFRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSL 414
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SLVGPP KRFMLHYSFPP+C NEVGKR GLNRREVGHGTLAEKALLAVLPPE FPYTV
Sbjct: 415 DSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTV 474
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+NSEVM+SDGSTSMA+VCGGSMALMDAGIPL+ HVAGVSVGL+++VDPS+GEIKDYRI+
Sbjct: 475 RINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIV 534
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDI+CE LE+A + RLQILDHME
Sbjct: 535 TDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHME 594
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
R I++PR QD SPRLAT KY ND+LR LIGP+G LKRKIEEETG R+S+ +GTLT+VA
Sbjct: 595 RNINSPRAQDGAYSPRLATFKYTNDSLRSLIGPMGVLKRKIEEETGARLSIDNGTLTIVA 654
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
KN+ VMEK EKVDFIIGREI VGG+YKG VTS+KEYGAFVEF+GGQQGLLH+SELSHEP
Sbjct: 655 KNQDVMEKAQEKVDFIIGREIVVGGVYKGTVTSIKEYGAFVEFSGGQQGLLHMSELSHEP 714
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE------ADVKGVVEGSVPVNK 774
VS+VSDV+ +GQ ++ CI DVRGNIKLS KA+ P+PE A V++ S V
Sbjct: 715 VSKVSDVLHIGQYITTMCIETDVRGNIKLSRKAMLPKPERKPASDAGKDSVMKESSTVYT 774
Query: 775 QATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQS 834
+ + V +V + + P P + S S PAV+IR+A EC E EK+S +++
Sbjct: 775 ETSSVGETVASMPSIVTP--PQK---------SKLSVPAVVIRTAVECHEAEKSSPVNKN 823
Query: 835 SKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFG-TEDG--- 890
K K K + KPK S+ ++T ++ S E AEC +DG
Sbjct: 824 DKP--KRATTPKPDRKPKSTASK---LTATQKEEEVLESIAPEETPAECGETLKQDGKLK 878
Query: 891 ----------------DEDNKGTRVE----------AIVSAKNLKLGTKVAAKVYQVRAR 924
+ K TR E A VS +NLK+GT++ AKV+++RAR
Sbjct: 879 SASPKNSSTDSNLVSSSKAKKSTRKENQSENKAEESAFVSTRNLKIGTEMTAKVHEIRAR 938
Query: 925 GLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
GLVLDLGG +RGMY+F+ +E+ +F GD L VKC+SF+ KGIPV++LVD
Sbjct: 939 GLVLDLGGELRGMYKFKEDEETEFEEGDTLQVKCTSFSTKGIPVMALVD 987
>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
gi|75336830|sp|Q9S7G6.1|PNP2_ARATH RecName: Full=Polyribonucleotide nucleotidyltransferase 2,
mitochondrial; Short=AtmtPNPase; AltName:
Full=Polynucleotide phosphorylase 2; Short=PNPase 2;
Flags: Precursor
gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 991
Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/1011 (67%), Positives = 804/1011 (79%), Gaps = 63/1011 (6%)
Query: 1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK 60
MSS+ + +LP FL WRALGFRTICSGRLGFAP P +P AGTK+LE+FK
Sbjct: 1 MSSIVNRASSA--SLPNFLAWRALGFRTICSGRLGFAPSVPD----SPVSAGTKILESFK 54
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
EEFE+GSR+++ ETGKIARFANG+VVLGMDETKVLSTVT +K DS RDFLPLTVDYQEKQ
Sbjct: 55 EEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPRDFLPLTVDYQEKQ 114
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+AQG+IPNTYMRREGAPKERELL GR+IDRPIRPLFP GFYHEVQ+MASVLSSDGKQDPD
Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPD 174
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+AANA+SAALMLSD+PWGGPIG+IRIGRICGQF+VNPTMDELS SDLNL+YACTR+KT+
Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQ+REISEKDL A LRLAHPEAVKYL+PQIRLAEKAGKQKKEYKLSM+S++TLEKV+
Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVA 294
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+LA IE+VFTDPSY KFERGEALD IG+DV+K EEE D+ESL +LPKAVDTVRK+V+
Sbjct: 295 DLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKKVV 354
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R+I++G RVDGR +DEVRPIYCES LP LHGS+LFSRGDTQVLCTVTLGAPAEAQ L
Sbjct: 355 RSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSL 414
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SLVGPP KRFMLHYSFPP+C NEVGKR GLNRREVGHGTLAEKALLAVLPPE FPYT+
Sbjct: 415 DSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTI 474
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+NSEVM+SDGSTSMA+VCGGSMALMDAGIPL+ HVAGVSVGL+++VDPS+GEIKDYRI+
Sbjct: 475 RINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIV 534
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDI+CE LE+A + RLQILDHME
Sbjct: 535 TDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHME 594
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
R I++PR QD SPRLATLKY ND+LR LIGP+G LKRKIE ETG R+S+ +GTLT+VA
Sbjct: 595 RNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLTIVA 654
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
KN+ VMEK E+VDFIIGRE+ VGG+YKG V+S+KEYGAFVEF GGQQGLLH+SELSHEP
Sbjct: 655 KNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEP 714
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
VS+VSDV+ +GQ ++ CI DVRGNIKLS KA+ P+P+ G PV K+++ V+
Sbjct: 715 VSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKPKRKPASDA-GKDPVMKESSTVY 773
Query: 781 ---ASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKS 837
+SVG++ M TP + S S PAV+IR+A EC+E EK+S + + K
Sbjct: 774 IENSSVGEIVAS------MPSIVTP-LQKSRLSVPAVVIRTAVECNEAEKSSPVNDNDKP 826
Query: 838 TLKSTLASKSNSKPKKFTS-----------------------------QSDFFSSTNIQK 868
+T SK + KPK S Q S + +
Sbjct: 827 RRAAT--SKPDRKPKSTASKLIATQKEEEALESIAPEETSAECGEILKQDGKLKSVSPKN 884
Query: 869 ST------SFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVR 922
++ SFS+ ++ + E L +E+ E++ A VS + LK+GT++ A V VR
Sbjct: 885 NSTASNLVSFSKAKKSTMKENL--SENKAEES------ASVSTRKLKIGTEMTATVDHVR 936
Query: 923 ARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
A GLVLDLGG IRGMY F+ ++ K F GD L VKC+SF KG+PV++LVD
Sbjct: 937 ALGLVLDLGGEIRGMYIFQGDKDK-FKKGDTLRVKCTSFNTKGVPVMALVD 986
>gi|357150173|ref|XP_003575367.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Brachypodium distachyon]
Length = 983
Score = 1249 bits (3232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/950 (66%), Positives = 763/950 (80%), Gaps = 29/950 (3%)
Query: 42 APPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS 101
APP P G KVLE+F+EEFEIG RLI ETGKIARFANG+VV+ MD+T VLSTV +S
Sbjct: 45 APPPP-----GRKVLESFREEFEIGGRLIAFETGKIARFANGSVVISMDDTHVLSTVAAS 99
Query: 102 KG-DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGF 160
K D VRDFLPLTVDYQEKQ+AQGVIP TYMRREGAPKERELL GRIIDRPIRPLFP GF
Sbjct: 100 KSSDPVRDFLPLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPRGF 159
Query: 161 YHEVQV-------MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ 213
YHEVQV +V+SSDGKQDPD+MAANA+SAALMLSDIPW GPIG+IR+GRI G
Sbjct: 160 YHEVQVCTLLFXITTNVISSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGN 219
Query: 214 FIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQI 273
F++NPT+DEL LSDLNL+YAC+R+KTLMIDVQAREI+E+DL+AG++LAH EAVKY++PQI
Sbjct: 220 FVLNPTVDELGLSDLNLIYACSRDKTLMIDVQAREITERDLQAGMKLAHSEAVKYIDPQI 279
Query: 274 RLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVK 333
RLA++AGK+K+EYKLSMIS+ + EK+ L+EA IE VFTD +Y KFERGEAL+KI Q VK
Sbjct: 280 RLAKRAGKEKREYKLSMISDGSYEKIRTLSEAPIEEVFTDKTYGKFERGEALEKITQSVK 339
Query: 334 KALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILH 393
LE+ECDEESL+ L KAVDTVRK+VIRKRII EG+R+DGRQLDEVRP+YCES PILH
Sbjct: 340 LKLEDECDEESLKFLSKAVDTVRKQVIRKRIIKEGLRLDGRQLDEVRPLYCESSTYPILH 399
Query: 394 GSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNR 453
GS+LFSRGDTQVLCTVTLGAP +AQRL+S+VGPP+KRFMLHYSFPPF INEV KR GLNR
Sbjct: 400 GSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPSKRFMLHYSFPPFSINEVAKRGGLNR 459
Query: 454 REVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQ 513
REVGHGTLAEKALLAVLPPE DFPYTVR+NSEVMASDGSTSMA+VCGGSMALMDAGIP++
Sbjct: 460 REVGHGTLAEKALLAVLPPEGDFPYTVRINSEVMASDGSTSMASVCGGSMALMDAGIPVR 519
Query: 514 EHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKP 573
EHVAGVSVGLVSEVDP TG+I YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKP
Sbjct: 520 EHVAGVSVGLVSEVDPMTGDISTYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKP 579
Query: 574 AGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGP 633
AGIPLDI+CE LE A K R QILD M++EIS+ R +D ++PRLATL + +D+LR+L+
Sbjct: 580 AGIPLDIVCESLEPARKARNQILDRMDQEISSARAINDGSAPRLATLSFSSDSLRKLL-- 637
Query: 634 LGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTS 693
++KIE+ETG R+SVSDGT+T+VAK ++VM+K LEKV+F++GREIEVG YKG+V+S
Sbjct: 638 --FHRKKIEQETGARVSVSDGTVTIVAKTQAVMDKALEKVEFLVGREIEVGKTYKGIVSS 695
Query: 694 VKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+KEYGAFV+FNGGQQGLLH+SELSHEPVS+VSD+V+VGQ LSL CIGQDVRGNIKLSLKA
Sbjct: 696 IKEYGAFVDFNGGQQGLLHISELSHEPVSKVSDIVTVGQVLSLTCIGQDVRGNIKLSLKA 755
Query: 754 VSPRPEADVKGVVEGSVPVNKQATDVWASVGDV-SNGQNPELPMRKNETPGVNSSTS-ST 811
P P K E + P Q WA+V ++ S E P K+E + + S ST
Sbjct: 756 TLPHPPKK-KSASEDTTPSPSQNVIGWAAVDNMPSKDPGVEPPNSKDEDVTIEDTPSFST 814
Query: 812 PAVLIRSAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTS 871
P+V+IRSA +CD ++ A+G ++ +S + S+ +KS+ + K + + +K++S
Sbjct: 815 PSVIIRSAVDCDAQDDANGPAK-KRSKVASSKVAKSSPRVYKQAKEQQEVRTVAAKKASS 873
Query: 872 FSQREREELAECLFGTEDG-----DEDNKGTRVEAIVS---AKNLKLGTKVAAKVYQVRA 923
S ++ + + +G + D T +++ + ++KLG V AKVYQ+RA
Sbjct: 874 TSSVKKNKKVKADDSGSNGLDNIPELDISNTLKSSVLKNFRSGSMKLGDVVTAKVYQIRA 933
Query: 924 RGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
GLVL+L G+RGM++F + +K+F +G+ELLVKC+SF KG+PV SL+D
Sbjct: 934 YGLVLELSDGVRGMHKFVESSRKNFEIGEELLVKCASFNAKGVPVFSLLD 983
>gi|75126260|sp|Q6KAI0.1|PNP2_ORYSJ RecName: Full=Polyribonucleotide nucleotidyltransferase 2,
mitochondrial; AltName: Full=Polynucleotide
phosphorylase 2; Short=PNPase 2; Flags: Precursor
gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
Japonica Group]
Length = 982
Score = 1216 bits (3145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/941 (66%), Positives = 745/941 (79%), Gaps = 31/941 (3%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFL 110
G KVLE+F+EEFEIG R+I+ ETGK+ARFANG+VV+ MD+T VLSTV ++K + VRDFL
Sbjct: 54 GRKVLESFREEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFL 113
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVM--- 167
PLTVDYQEKQ+AQGVIP TYMRREGAPKERELL GRIIDRPIRPLFP GFYHEVQVM
Sbjct: 114 PLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNAT 173
Query: 168 ---ASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
+V+SSDGKQDPD+MAANA+SAALMLSDIPW GPIG+IR+GRI G F++NPT+DEL
Sbjct: 174 IIMVNVISSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELG 233
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
LSDLNLVYAC+R+KTLMIDVQAREI+E+DL+AG++LAH EAVK + PQ+RLA++AGK+KK
Sbjct: 234 LSDLNLVYACSRDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKK 293
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES 344
EYK+S+IS+++ EK+ L+EA IE VFTD +Y KFERGEAL+ I Q VK LEEECDE+S
Sbjct: 294 EYKISLISDKSYEKIRTLSEAPIEEVFTDSTYGKFERGEALENITQSVKAKLEEECDEDS 353
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
L+ L KAVDTVRK+VIRKRII +G+RVDGRQLDEVRP+YCES PILHGS+LFSRGDTQ
Sbjct: 354 LKFLHKAVDTVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQ 413
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
VLCTVTLGAP +AQRL+S+VGPPTKRFMLHYSFPPF INEV KR GLNRREVGHGTLAEK
Sbjct: 414 VLCTVTLGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEK 473
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
ALLAVLPPE +FPYTVRVNSEVMASDGSTSMA+VCGGSMALMDAGIP++EHVAGVSVGLV
Sbjct: 474 ALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLV 533
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
SEVD +TG+I YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICE
Sbjct: 534 SEVDQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICES 593
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
LE A K R QILD M++EIS+ R +D +SPRLATL + +D+LR+L+ ++KIE+E
Sbjct: 594 LEPARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLL----FHRKKIEQE 649
Query: 645 TGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
TG R+SVSDGT+T+VAK + +M+K +EKV+F++GREIEVG YKGVV+S+KEYGAFVEFN
Sbjct: 650 TGARVSVSDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFN 709
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
GGQQGLLH+SELSH+ VS+VSDVVSVGQ LSL CIGQD+RGNIKLSLKA P
Sbjct: 710 GGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLPHAHEKKDL 769
Query: 765 VVEGSVPVNKQATDVWASVGDV-SNGQNPELPMRKN------ETPGVNSSTSSTPAVLIR 817
+ P+ Q W +V ++ S N E + K+ ETPG STPAV+IR
Sbjct: 770 ASNHTDPLPSQEVVGWTAVENMPSKDANAEPSISKDEDNMIEETPGC-----STPAVIIR 824
Query: 818 SAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQRER 877
SAAECD ++ + + KS S SKP + S+ +++ +++ +
Sbjct: 825 SAAECDAQDVTNDPKKKRPKVAKS---SPKLSKPASERQEVKRTSAKKTSGASTTAKKNK 881
Query: 878 EELAECLFGTEDGDEDNKGTRVEAIVSAKN-----LKLGTKVAAKVYQVRARGLVLDLGG 932
+E A+ D + + + S N +KLG V AKVYQ+RA GLVL+L
Sbjct: 882 KEKADSSNDVLDAIPEQNKSNIMNYSSPSNFRSGSMKLGDVVTAKVYQIRAYGLVLELSD 941
Query: 933 GIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
G+RGM++F N KDF VG+ELLVKCSSF KGIPV SL+D
Sbjct: 942 GVRGMHKFAENGHKDFEVGEELLVKCSSFNAKGIPVFSLLD 982
>gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
Length = 983
Score = 1215 bits (3144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/951 (65%), Positives = 746/951 (78%), Gaps = 53/951 (5%)
Query: 50 VAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRD 108
V G KVLE+F+EEFEIG R I ETGK+ARFANG+VV+ M++T VLSTV ++K + VRD
Sbjct: 59 VPGRKVLESFREEFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRD 118
Query: 109 FLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMA 168
FLPLTVDYQEKQ+AQGVIP TYMRREGAPKERELL GRIIDRPIRPLFP GFYHEVQ+M
Sbjct: 119 FLPLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMV 178
Query: 169 SVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDL 228
+VLSSDGKQDPD+MAANA+SAALMLSDIPW GPIG+IR+GRI G FI+NPT+DEL SDL
Sbjct: 179 NVLSSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFILNPTVDELGSSDL 238
Query: 229 NLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKL 288
NL+YAC+R+KTLMIDVQAREI+E+DL+AG++LAH EA+K ++PQIRLA++AGK+KKEYK+
Sbjct: 239 NLIYACSRDKTLMIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKEKKEYKI 298
Query: 289 SMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL 348
S+IS+ + EK+ +EA IE VFTD SY KFERGEAL+KI Q VK LEEE DE+SL+ L
Sbjct: 299 SLISDTSYEKIRTFSEAPIEEVFTDSSYGKFERGEALEKITQTVKAKLEEENDEDSLKFL 358
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
KAVDTVRK+VIRKRII EG+RVDGRQLDEVRP+YCES P+LHGS+LFSRGDTQVLCT
Sbjct: 359 HKAVDTVRKQVIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCT 418
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
VTLGAP +AQRL+S+VGPPTKRFMLHYSFPPF INEV KR GLNRREVGHGTLAEKALLA
Sbjct: 419 VTLGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLA 478
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLPPE+DFPY VRVNSEVMASDGSTSMA+VCGGSMALMDAGIP++EHVAGVSVGLVS+VD
Sbjct: 479 VLPPESDFPYAVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVD 538
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
P+TG+I +YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICE LE A
Sbjct: 539 PATGDISNYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPA 598
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
K R QILD M++EIS R +D +SPRLATL + +D+LR+L+ ++KIE+ETG R
Sbjct: 599 RKARNQILDRMDQEISTARAINDGSSPRLATLSFSSDSLRKLL----FHRKKIEQETGAR 654
Query: 649 ISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+SVSDGT+T+VAK + +M+K +EKV+F++GREIEVG YKG+V+S+KEYGAFVEFNGGQQ
Sbjct: 655 VSVSDGTVTIVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQ 714
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE--------- 759
GLLH+SELSHEPV++VSDVV+VGQ LSLRCIGQDVRGNIKLSLKA P+P
Sbjct: 715 GLLHISELSHEPVAKVSDVVTVGQSLSLRCIGQDVRGNIKLSLKATLPQPRSKKDLKTKD 774
Query: 760 ---ADVKG--VVEGSVPVNKQATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAV 814
++V G VE + V+ D AS + NG E P STP+V
Sbjct: 775 PLPSEVSGWTAVENMISVD---VDAEASSTEHENGTTEEAP------------AFSTPSV 819
Query: 815 LIRSAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSD-----FFSSTNIQKS 869
+IRSAA+CD ++ A+G + +K A+KS+ +P K S+ + +
Sbjct: 820 IIRSAADCDAQDDANGPKKRAK-------AAKSSPRPYKPASEGHEVRKATAKKSTSATT 872
Query: 870 TSFSQREREELAECLFGTEDGD--EDNKGTRVEAIVSAKN-----LKLGTKVAAKVYQVR 922
+ + EE T D E ++ S N +KLG V AKVYQ+R
Sbjct: 873 KKTKKIKIEESGSNGLQTSGSDVPEKTADNTLDLNQSPTNFQSGAMKLGDVVTAKVYQIR 932
Query: 923 ARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
A GLVL+L G RGM++FE N +K+F VG ELLVKCSSF KGIPV SL+D
Sbjct: 933 AFGLVLELSDGARGMHKFEANGQKEFEVGQELLVKCSSFNAKGIPVFSLLD 983
>gi|413937786|gb|AFW72337.1| hypothetical protein ZEAMMB73_632002 [Zea mays]
Length = 980
Score = 1208 bits (3126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/943 (65%), Positives = 751/943 (79%), Gaps = 37/943 (3%)
Query: 50 VAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRD 108
V G KVLE+F+EEFEIG R I ETGK+ARFANG+VV+ M++T VLSTV ++K + +RD
Sbjct: 56 VPGRKVLESFREEFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPIRD 115
Query: 109 FLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMA 168
FLPLTVDYQEKQ+AQGVIP TYMRREGAPKERELL GRIIDRPIRPLFP GFYHEVQ+M
Sbjct: 116 FLPLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMV 175
Query: 169 SVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDL 228
+VLSSDGKQDPD+MAANA+SAALMLSDIPW GPIG+IR+GRI G FI+NPT+DEL LSDL
Sbjct: 176 NVLSSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGAFILNPTVDELGLSDL 235
Query: 229 NLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKL 288
NLVYAC+R+KTLMIDVQAREISE+DL+AG++LAH EA+K ++PQI LA++AGK+KKEYK+
Sbjct: 236 NLVYACSRDKTLMIDVQAREISERDLQAGMKLAHSEAIKCIDPQISLAKRAGKKKKEYKI 295
Query: 289 SMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL 348
S+IS+ + EK+ +EA IE VFTD SY KFERG AL+KI Q VK LEEE DE+SL+ L
Sbjct: 296 SLISDTSYEKIRTFSEAPIEEVFTDSSYGKFERGGALEKITQSVKAKLEEENDEDSLKFL 355
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
KAVDTVRK+VIRKRII EG+RVDGRQLDEVRP+YCES P+LHGS+LFSRGDTQVLCT
Sbjct: 356 HKAVDTVRKQVIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCT 415
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
VTLGAP +AQRL+S+VGPPTKRFMLHYSFPPF I+EV KR GLNRREVGHGTLAEKALLA
Sbjct: 416 VTLGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSIDEVAKRGGLNRREVGHGTLAEKALLA 475
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLPPE+DFPYTVRVN+EVMASDGSTSMA+VCGGSMALMDAGIP++EHVAGVSVGLVS+VD
Sbjct: 476 VLPPESDFPYTVRVNAEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVD 535
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
P+TG+I +YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICE LE A
Sbjct: 536 PATGDISNYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPA 595
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
K R QILD M++EIS R +D +SPRLATL + N++LR+L+ ++KIE+ETG R
Sbjct: 596 RKARNQILDRMDQEISTARGINDGSSPRLATLSFSNESLRKLL----FHRKKIEQETGAR 651
Query: 649 ISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+S+SDGT+T+VAK + +M+K +EKV+F++GREIEVG YKG+V+S+KEYGAFVEFNGGQQ
Sbjct: 652 VSISDGTVTIVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQ 711
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEG 768
GLLH+SELSH+PV++VSDVV++GQ LSLRCIGQD+RGNIKLSLKA P+P +K ++
Sbjct: 712 GLLHISELSHQPVTKVSDVVTLGQSLSLRCIGQDMRGNIKLSLKATLPQPR--IKKDLKN 769
Query: 769 SVPVNKQATDVWASVGDVSNGQ-NPELPMRKNETPGVNSSTS-STPAVLIRSAAECDEEE 826
P+ + T WA+V ++S+ + +L ++E + + STP+V+IRSAA+CD ++
Sbjct: 770 KDPLPSEVTG-WAAVENMSSVDVDAQLSSTEHENGTTEEAAAFSTPSVIIRSAADCDAQD 828
Query: 827 KASGFSQSSKSTLKSTLASKSNSKPKKFTSQSD----------------FFSSTNIQKST 870
A+G + +K +KS+ +P K S+ I++S
Sbjct: 829 DANGSKKRAK-------VAKSSPRPNKPASECHDVRKATAKKATGATTKKTKKVKIEESV 881
Query: 871 SFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDL 930
S D++ T+ + + +KLG V AKVYQ+RA GLVL+L
Sbjct: 882 SNGLETSGSDVPEQSADNTSDQNQSPTKFQ----SGAMKLGDVVTAKVYQIRAYGLVLEL 937
Query: 931 GGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
G+RGM++FE N K+F VG EL+VKCSSF KGIP+ SL+D
Sbjct: 938 SDGVRGMHKFEANGLKEFEVGQELVVKCSSFNAKGIPLFSLLD 980
>gi|357495779|ref|XP_003618178.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355493193|gb|AES74396.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 1106
Score = 1200 bits (3104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/880 (69%), Positives = 704/880 (80%), Gaps = 28/880 (3%)
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY+EKQF+ G+IP+TYMRREGAPKERELL RIIDRPIRPLFP GFYHEVQV ASVLSS
Sbjct: 233 VDYEEKQFSHGLIPSTYMRREGAPKERELLCARIIDRPIRPLFPPGFYHEVQVTASVLSS 292
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DG QDP + AANATSAALMLSDIPWGGPIGMIRIGRICGQF+VNPTMDELSLSDLNL+YA
Sbjct: 293 DGTQDPIVYAANATSAALMLSDIPWGGPIGMIRIGRICGQFVVNPTMDELSLSDLNLIYA 352
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
CT++KTLMIDVQAREISE+DL+AGLR AHPEAVKY+EPQIRLA KAGK KKEYKLSM+S+
Sbjct: 353 CTKDKTLMIDVQAREISEEDLQAGLRFAHPEAVKYIEPQIRLAAKAGKSKKEYKLSMLSD 412
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+TLEKVSNLAEA I+AVFTDPSY KFERG+ALD I QDVKK LEEE DEES++VL K +D
Sbjct: 413 KTLEKVSNLAEAPIKAVFTDPSYGKFERGKALDNITQDVKKVLEEEGDEESIKVLSKTID 472
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
TVRK+V+RKRIIAEG RVDGRQLDEVRP+YCE+G + L GS+ F RG+TQVLCTVTLGA
Sbjct: 473 TVRKKVVRKRIIAEGSRVDGRQLDEVRPLYCEAGCISKLRGSADFFRGETQVLCTVTLGA 532
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
P +AQ L+SLVGP +KRFMLHYSFPP+CI EVGKR GLNRREVGHG LAEKALLAVLPPE
Sbjct: 533 PKDAQHLDSLVGPSSKRFMLHYSFPPYCIGEVGKRGGLNRREVGHGALAEKALLAVLPPE 592
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYTVRVNSEVMASDGSTSMA+VCG SMALM+AGIP++EHVAG+SVGLVSE+DP TGE
Sbjct: 593 VVFPYTVRVNSEVMASDGSTSMASVCGASMALMNAGIPIREHVAGISVGLVSELDPCTGE 652
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
I DYRILTDILGLEDHLGD+DFKIAGTR GVTA QLD+KPAGIPLDIICECLE AHK L
Sbjct: 653 IVDYRILTDILGLEDHLGDIDFKIAGTRKGVTAAQLDMKPAGIPLDIICECLEPAHKAHL 712
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
I+DHMEREI P T+ +S ++ TLKY ND LRRLIGP+G L +K+E ETG R+SV D
Sbjct: 713 HIIDHMEREIKEPCTKQGSSSQQIVTLKYSNDALRRLIGPMGVLLKKLEMETGARLSVGD 772
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GTLT+V KN+S+M+K LEKV I+GREIEVGGIYKGVVTS+KEYGAFVEFNGG+QGLLH+
Sbjct: 773 GTLTIVTKNQSLMDKTLEKVVSIVGREIEVGGIYKGVVTSIKEYGAFVEFNGGKQGLLHI 832
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP-EADVKGVVEGSVPV 772
SELSHEPVS++SD+VS+GQQLSL CIGQDV GNIKLSLKA P ++ + E S
Sbjct: 833 SELSHEPVSKISDIVSIGQQLSLMCIGQDVHGNIKLSLKAALRGPGGSETNYIAEVSATS 892
Query: 773 NKQATDVWASVGD---VSNGQN--PELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEK 827
K T+ WA V D ++ QN +LP+ KNE S S TP ++IRSAAECDEEEK
Sbjct: 893 AKVTTNSWAPVWDASSITQEQNSASKLPIEKNEVGETKPSASQTPVIVIRSAAECDEEEK 952
Query: 828 ASGF--SQSSKSTL-----KSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREEL 880
+ +Q+S S L K + + K D S + +S S ++ + +
Sbjct: 953 SISLDHNQTSNSPLIDDGVKLDSSKSKSPSKSKPRKSQDAVDSPS--QSGSLPKKPKLSM 1010
Query: 881 AECLF-------GTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGG 933
+ L G E D+DN+ ++AK+L LGTK AKV+Q+RA GLVLDLGGG
Sbjct: 1011 QKKLKSDTQRAEGNEKKDKDNEP------LTAKDLPLGTKFKAKVFQIRAHGLVLDLGGG 1064
Query: 934 IRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
+RGMYRFE + K D VGDE+ V SSF+ KGIPVV VD
Sbjct: 1065 VRGMYRFEGDGKTDLKVGDEMPVVLSSFSSKGIPVVFPVD 1104
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLP 111
TK+LETF EEFE+G+RLIT + GK RF+NGAVVL M++ K+LS V +S+ + R DFLP
Sbjct: 38 TKLLETFTEEFEVGNRLITFQNGKYGRFSNGAVVLTMEDNKILSAVNTSRDEIARNDFLP 97
Query: 112 LT 113
LT
Sbjct: 98 LT 99
>gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group]
Length = 1030
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/989 (62%), Positives = 742/989 (75%), Gaps = 79/989 (7%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFL 110
G KVLE+F+EEFEIG R+I+ ETGK+ARFANG+VV+ MD+T VLSTV ++K + VRDFL
Sbjct: 54 GRKVLESFREEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFL 113
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTVDYQEKQ+AQGVIP TYMRREGAPKERELL GRIIDRPIRPLFP GFYHEVQ+M +V
Sbjct: 114 PLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNV 173
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+SSDGKQDPD+MAANA+SAALMLSDIPW GPIG+IR+GRI G F++NPT+DEL LSDLNL
Sbjct: 174 ISSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNL 233
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
VYAC+R+KTLMIDVQAREI+E+DL+AG++LAH EAVK + PQ+RLA++AGK+KKEYK+S+
Sbjct: 234 VYACSRDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISL 293
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
IS+++ EK+ L+EA IE VFTD +Y KFERGEAL+ I Q VK LEEECDE+SL+ L K
Sbjct: 294 ISDKSYEKIRTLSEAPIEEVFTDSTYGKFERGEALENITQSVKAKLEEECDEDSLKFLHK 353
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
AVDTVRK+VIRKRII +G+RVDGRQLDEVRP+YCES PILHGS+LFSRGDTQVLCTVT
Sbjct: 354 AVDTVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVT 413
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT---------- 460
LGAP +AQRL+S+VGPPTKRFMLHYSFPPF INEV KR GLNRREVGH T
Sbjct: 414 LGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHVTRLPIAWAHTD 473
Query: 461 ---------------LAEKAL-----------------------------LAVLPPENDF 476
+ KAL LAVLPPE +F
Sbjct: 474 GLHGPIRLGDELRVWIEHKALDPTGFLLTNRLVFWERQWLSAGTLAEKALLAVLPPEGEF 533
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYTVRVNSEVMASDGSTSMA+VCGGSMALMDAGIP++EHVAGVSVGLVSEVD +TG+I
Sbjct: 534 PYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTGDISS 593
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICE LE A K R QIL
Sbjct: 594 YRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKARNQIL 653
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTL 656
D M++EIS+ R +D +SPRLATL + +D+LR+L+ ++KIE+ETG R+SVSDGT+
Sbjct: 654 DRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLL----FHRKKIEQETGARVSVSDGTV 709
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
T+VAK + +M+K +EKV+F++GREIEVG YKGVV+S+KEYGAFVEFNGGQQGLLH+SEL
Sbjct: 710 TIVAKTQPIMDKAIEKVEFLVGREIEVGKTYKGVVSSIKEYGAFVEFNGGQQGLLHISEL 769
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQA 776
SH+ VS+VSDVVSVGQ LSL CIGQD+RGNIKLSLKA P + P+ Q
Sbjct: 770 SHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLPHAHEKKDLASNHTDPLPSQE 829
Query: 777 TDVWASVGDV-SNGQNPELPMRKN------ETPGVNSSTSSTPAVLIRSAAECDEEEKAS 829
W +V ++ S N E + K+ ETPG STPAV+IRSAAECD ++ +
Sbjct: 830 VVGWTAVENMPSKDANAEPSISKDEDNMIEETPGC-----STPAVIIRSAAECDAQDVTN 884
Query: 830 GFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTED 889
+ KS S SKP + S+ +++ +++ ++E A+ D
Sbjct: 885 DPKKKRPKVAKS---SPKLSKPASERQEVKRTSAKKTSGASTTAKKNKKEKADSSNDVLD 941
Query: 890 GDEDNKGTRVEAIVSAKN-----LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE 944
+ + + S N +KLG V AKVYQ+RA GLVL+L G+RGM++F N
Sbjct: 942 AIPEQNKSNIMNYSSPSNFRSGSMKLGDVVTAKVYQIRAYGLVLELSDGVRGMHKFAENG 1001
Query: 945 KKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
KDF VG+ELLVKCSSF KGIPV SL+D
Sbjct: 1002 HKDFEVGEELLVKCSSFNAKGIPVFSLLD 1030
>gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group]
Length = 941
Score = 1160 bits (3001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/953 (63%), Positives = 723/953 (75%), Gaps = 68/953 (7%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+ARFANG+VV+ MD+T VLSTV ++K + VRDFLPLTVDYQEKQ+AQGVIP TYMRREG
Sbjct: 1 MARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQYAQGVIPTTYMRREG 60
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
APKERELL GRIIDRPIRPLFP GFYHEVQ+M +V+SSDGKQDPD+MAANA+SAALMLSD
Sbjct: 61 APKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPDVMAANASSAALMLSD 120
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IPW GPIG+IR+GRI G F++NPT+DEL LSDLNLVYAC+R+KTLMIDVQAREI+E+DL+
Sbjct: 121 IPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTLMIDVQAREITERDLQ 180
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPS 315
AG++LAH EAVK + PQ+RLA++AGK+KKEYK+S+IS+++ EK+ L+EA IE VFTD +
Sbjct: 181 AGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYEKIRTLSEAPIEEVFTDST 240
Query: 316 YSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQ 375
Y KFERGEAL+ I Q VK LEEECDE+SL+ L KAVDTVRK+VIRKRII +G+RVDGRQ
Sbjct: 241 YGKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQVIRKRIIEKGLRVDGRQ 300
Query: 376 LDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHY 435
LDEVRP+YCES PILHGS+LFSRGDTQVLCTVTLGAP +AQRL+S+VGPPTKRFMLHY
Sbjct: 301 LDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFMLHY 360
Query: 436 SFPPFCINEVGKRVGLNRREVGH------------------------------------- 458
SFPPF INEV KR GLNRREVGH
Sbjct: 361 SFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLTNRLVFWE 420
Query: 459 ------GTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPL 512
GTLAEKALLAVLPPE +FPYTVRVNSEVMASDGSTSMA+VCGGSMALMDAGIP+
Sbjct: 421 RQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPV 480
Query: 513 QEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIK 572
+EHVAGVSVGLVSEVD +TG+I YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIK
Sbjct: 481 REHVAGVSVGLVSEVDQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIK 540
Query: 573 PAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIG 632
PAGIPLDIICE LE A K R QILD M++EIS+ R +D +SPRLATL + +D+LR+L+
Sbjct: 541 PAGIPLDIICESLEPARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLL- 599
Query: 633 PLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVT 692
++KIE+ETG R+SVSDGT+T+VAK + +M+K +EKV+F++GREIEVG YKGVV+
Sbjct: 600 ---FHRKKIEQETGARVSVSDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVS 656
Query: 693 SVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+KEYGAFVEFNGGQQGLLH+SELSH+ VS+VSDVVSVGQ LSL CIGQD+RGNIKLSLK
Sbjct: 657 SIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLK 716
Query: 753 AVSPRPEADVKGVVEGSVPVNKQATDVWASVGDV-SNGQNPELPMRKN------ETPGVN 805
A P + P+ Q W +V ++ S N E + K+ ETPG
Sbjct: 717 ATLPHAHEKKDLASNHTDPLPSQEVVGWTAVENMPSKDANAEPSISKDEDNMIEETPGC- 775
Query: 806 SSTSSTPAVLIRSAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTN 865
STPAV+IRSAAECD ++ + + KS S SKP + S+
Sbjct: 776 ----STPAVIIRSAAECDAQDVTNDPKKKRPKVAKS---SPKLSKPASERQEVKRTSAKK 828
Query: 866 IQKSTSFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKN-----LKLGTKVAAKVYQ 920
+++ +++ ++E A+ D + + + S N +KLG V AKVYQ
Sbjct: 829 TSGASTTAKKNKKEKADSSNDVLDAIPEQNKSNIMNYSSPSNFRSGSMKLGDVVTAKVYQ 888
Query: 921 VRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
+RA GLVL+L G+RGM++F N KDF VG+ELLVKCSSF KGIPV SL+D
Sbjct: 889 IRAYGLVLELSDGVRGMHKFAENGHKDFEVGEELLVKCSSFNAKGIPVFSLLD 941
>gi|226493578|ref|NP_001146202.1| uncharacterized protein LOC100279772 [Zea mays]
gi|219886165|gb|ACL53457.1| unknown [Zea mays]
Length = 733
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/747 (62%), Positives = 585/747 (78%), Gaps = 28/747 (3%)
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQAREISE+DL+AG++LAH EA+K ++PQI LA++AGK+KKEYK+S+IS+ + EK+
Sbjct: 1 MIDVQAREISERDLQAGMKLAHSEAIKCIDPQISLAKRAGKKKKEYKISLISDTSYEKIR 60
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+EA IE VFTD SY KFERG AL+KI Q VK LEEE DE+SL+ L KAVDTVRK+VI
Sbjct: 61 TFSEAPIEEVFTDSSYGKFERGGALEKITQSVKAKLEEENDEDSLKFLHKAVDTVRKQVI 120
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RKRII EG+RVDGRQLDEVRP+YCES P+LHGS+LFSRGDTQVLCTVTLGAP +AQRL
Sbjct: 121 RKRIIEEGLRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQRL 180
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+S+VGPPTKRFMLHYSFPPF I+EV KR GLNRREVGHGTLAEKALLAVLPPE+DFPYTV
Sbjct: 181 DSIVGPPTKRFMLHYSFPPFSIDEVAKRGGLNRREVGHGTLAEKALLAVLPPESDFPYTV 240
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RVN+EVMASDGSTSMA+VCGGSMALMDAGIP++EHVAGVSVGLVS+VDP+TG+I +YRIL
Sbjct: 241 RVNAEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGDISNYRIL 300
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICE LE A K R QILD M+
Sbjct: 301 TDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMD 360
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
+EIS R +D +SPRLATL + N++LR+L+ ++KIE+ETG R+S+SDGT+T+VA
Sbjct: 361 QEISTARGINDGSSPRLATLSFSNESLRKLL----FHRKKIEQETGARVSISDGTVTIVA 416
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
K + +M+K +EKV+F++GREIEVG YKG+V+S+KEYGAFVEFNGGQQGLLH+SELSH+P
Sbjct: 417 KTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHISELSHQP 476
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
V++VSDVV++GQ LSLRCIGQD+RGNIKLSLKA P+P +K ++ P+ + T W
Sbjct: 477 VTKVSDVVTLGQSLSLRCIGQDMRGNIKLSLKATLPQPR--IKKDLKNKDPLPSEVTG-W 533
Query: 781 ASVGDVSNGQ-NPELPMRKNETPGVNSSTS-STPAVLIRSAAECDEEEKASGFSQSSKST 838
A+V ++S+ + +L ++E + + STP+V+IRSAA+CD ++ A+G + +K
Sbjct: 534 AAVENMSSVDVDAQLSSTEHENGTTEEAAAFSTPSVIIRSAADCDAQDDANGSKKRAK-- 591
Query: 839 LKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQRER-----EELAECLFGTEDGD-- 891
+KS+ +P K S+ +K+T + ++ EE T D
Sbjct: 592 -----VAKSSPRPNKPASECHDVRKATAKKATGATTKKTKKVKIEESVSNGLETSGSDVP 646
Query: 892 ---EDNKGTRVEAIVSAKN--LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKK 946
DN + ++ ++ +KLG V AKVYQ+RA GLVL+L G+RGM++FE N K
Sbjct: 647 EQSADNTSDQNQSPTKFQSGAMKLGDVVTAKVYQIRAYGLVLELSDGVRGMHKFEANGLK 706
Query: 947 DFVVGDELLVKCSSFTGKGIPVVSLVD 973
+F VG EL+VKCSSF KGIP+ SL+D
Sbjct: 707 EFEVGQELVVKCSSFNAKGIPLFSLLD 733
>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/743 (61%), Positives = 561/743 (75%), Gaps = 44/743 (5%)
Query: 258 LRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYS 317
++LAH EAVKY++PQIRLA++AGK+K+EYKLSMIS+++ EK+ L+EA IE VFTD SY
Sbjct: 1 MKLAHSEAVKYIDPQIRLAKRAGKEKREYKLSMISDESYEKIRTLSEAPIEEVFTDKSYG 60
Query: 318 KFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLD 377
KFERGEAL I + VK+ LEEECDEESL+ LPKAVDTVRK+VIRKRII EG+RVDGR+LD
Sbjct: 61 KFERGEALQNITESVKEKLEEECDEESLKFLPKAVDTVRKQVIRKRIIKEGLRVDGRRLD 120
Query: 378 EVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSF 437
EVRP+YCES PILHGS+LFSRGDTQVLCTVTLGAP +AQRL+S+VGPPTKRFMLHYSF
Sbjct: 121 EVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFMLHYSF 180
Query: 438 PPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMAT 497
PPF INEV KR GLNRREVGHGTLAEKALLAVLPPE DFPYTVRVNSEVMASDGSTSMA+
Sbjct: 181 PPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPEGDFPYTVRVNSEVMASDGSTSMAS 240
Query: 498 VCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKI 557
VCGGSMALMDAGIP++EHVAGVSVGLVSE DP+TG+I YRILTDILGLEDHLGDMDFKI
Sbjct: 241 VCGGSMALMDAGIPVREHVAGVSVGLVSEADPTTGDISSYRILTDILGLEDHLGDMDFKI 300
Query: 558 AGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRL 617
AGTR G+TAIQLDIKPAGIPLDI+CE LE A K R QILD M++EIS R +D +SPRL
Sbjct: 301 AGTRRGITAIQLDIKPAGIPLDIVCESLEPARKARNQILDRMDQEISTARAINDGSSPRL 360
Query: 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFII 677
ATL + +++LR+L+ ++KIE++TG R+SVSDGT+T+VAK + +M+K +EKV+F++
Sbjct: 361 ATLSFSSNSLRKLL----FHRKKIEQDTGARVSVSDGTVTIVAKTQPIMDKAIEKVEFLV 416
Query: 678 GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLR 737
GREIEVG YKG+V+S+KEYGAFV+FNGGQQGLLH+SELSHEPVS+VSD++SVGQ LSL
Sbjct: 417 GREIEVGKTYKGIVSSIKEYGAFVDFNGGQQGLLHISELSHEPVSKVSDIISVGQALSLT 476
Query: 738 CIGQDVRGNIKLSLKAVSP-RPEADVKGVVEGSVPVNKQATDVWASV-------GDVSNG 789
CIGQDVRGNIKLSLKA P RP ++ E + + Q WA+V DV +
Sbjct: 477 CIGQDVRGNIKLSLKANHPHRPAKELAS--EDATFLPSQDLVGWAAVENMPSKDADVKSS 534
Query: 790 QNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKSTLKSTLASKS-- 847
+ E ETP STPAV+IRSAA+CD ++ A+G ++ S +A S
Sbjct: 535 NSIEGDNTTEETPAF-----STPAVIIRSAADCDAQDVANGPTKKRSKAASSKVAKPSPR 589
Query: 848 ------------NSKPKKFTSQSDFFSSTNIQKSTSFSQR-----EREELAECLFGTEDG 890
+ PKK ++ S + + S S E E +AE
Sbjct: 590 VSKPTKELQEARKASPKKASTTSIVKKNKKAKADDSASNELDAVPEHEAIAEQEISNTLK 649
Query: 891 DEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVV 950
K R + ++KLG V AKVYQ+RA GLVL+L G+RGM++F N + +F V
Sbjct: 650 HSSPKNFR------SGSIKLGDVVTAKVYQIRAYGLVLELSDGVRGMHKFAENSQTNFEV 703
Query: 951 GDELLVKCSSFTGKGIPVVSLVD 973
G+E+LVKC++F+ KG+PV SL+D
Sbjct: 704 GEEVLVKCATFSAKGVPVFSLLD 726
>gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
Length = 705
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/699 (60%), Positives = 552/699 (78%), Gaps = 3/699 (0%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQ 117
F+E IG L+T ETGK+A+FA GAVV G ETKVL TV S + D+ RDF+PL V+Y+
Sbjct: 4 FEESVMIGPELLTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYR 63
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK +AQG IPNT+MRREGAPKERELL GR+IDR IRPLFP G+Y E Q+MA+VLSSDG+Q
Sbjct: 64 EKSYAQGKIPNTFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLSSDGEQ 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPDI+AANA SAAL LSD+PW GPIG++RIGR+ G+F+VNP MD LS SDLNL+Y+CT E
Sbjct: 124 DPDILAANAASAALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAE 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
++LMI+ QAREI+ KD A L+LAH EA K +EPQ RLA K G +K+ ++ + LE
Sbjct: 184 RSLMIETQAREITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDAPVLE 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
K+ L+E HI+AV +P+ KFERG+AL K ++V+ L++E DE +L DTV+K
Sbjct: 244 KIRGLSEEHIKAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKK 303
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+++R+ + + +RVDGR L +VR +YCE+G P LHGSSLFSRG+TQVLCTVTLGAP +A
Sbjct: 304 QIVRENVFQKNIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDA 363
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN-DF 476
Q+L+S+VGPP KRFM+HYSFPPF +NEVGK GLNRREVGHGTLAEKAL+A+LPPE+ +F
Sbjct: 364 QKLDSIVGPPKKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENF 423
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY+VRVNSEVMASDGS+SMATVCGGS+ALMDAGIPL+ HVAG+SVGL++ VD TGEIK+
Sbjct: 424 PYSVRVNSEVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLITNVDAETGEIKN 483
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
Y+ILTDILGLEDHLGDMDFKIAGT+ GVTAIQLDIK G+PL I+CE LE A+ R +IL
Sbjct: 484 YKILTDILGLEDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKIL 543
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGT 655
D ME+EIS PR +++PR T+ +++ RLIGP G+ R ++ +G R++V DG
Sbjct: 544 DLMEKEISKPRDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGN 603
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ +++++ + ++ ++GREI VG Y G V+++K++GAF++F+GGQQGLLH+SE
Sbjct: 604 VHIISRSEKSFKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISE 663
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+SHEPVS ++DV+SVGQQ+++ C G+D RGN+K S KAV
Sbjct: 664 ISHEPVSSIADVLSVGQQITVLCTGRDFRGNLKFSRKAV 702
>gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
Length = 705
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/702 (60%), Positives = 553/702 (78%), Gaps = 3/702 (0%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
++ F+E IG L+T ETGK+A+FA GAVV G ETKVL TV S + D+ RDF+PL V
Sbjct: 1 MQVFEESVMIGPELLTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+Y+EK +AQG IPNT+MRREGAPKERELL GR+IDR IRPLFP G+Y E Q+MA+VL SD
Sbjct: 61 EYREKSYAQGKIPNTFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLCSD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
G+QDPDI+AANA SAAL LSD+PW GPIG++RIGR+ G+F+VNP MD LS SDLNL+Y+C
Sbjct: 121 GEQDPDILAANAASAALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSC 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T E++LMI+ QAREI+ KD A L+LAH EA K +EPQ RLA K G +K+ ++ +
Sbjct: 181 TAERSLMIETQAREITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDVP 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
LEK+ L+E HI+AV +P+ KFERG+AL K ++V+ L++E DE +L DT
Sbjct: 241 VLEKIRGLSEEHIKAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDT 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V+K+++R+ + + +RVDGR L +VR +YCE+G P LHGSSLFSRG+TQVLCTVTLGAP
Sbjct: 301 VKKQIVRENVFQKNIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAP 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ+L+S+VGPP KRFM+HYSFPPF +NEVGK GLNRREVGHGTLAEKAL+A+LPPE+
Sbjct: 361 EDAQKLDSIVGPPKKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPED 420
Query: 475 -DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPY+VRVNSEVMASDGS+SMATVCGGS+ALMDAGIPL+ HVAG+SVGL++ VD TGE
Sbjct: 421 ENFPYSVRVNSEVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLMTNVDAETGE 480
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
IK+Y+ILTDILGLEDHLGDMDFKIAGT+ GVTAIQLDIK G+PL I+CE LE A+ R
Sbjct: 481 IKNYKILTDILGLEDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARK 540
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS- 652
+ILD ME+EIS PR +++PR T+ +++ RLIGP G+ R ++ +G R++V
Sbjct: 541 KILDLMEKEISKPRDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGE 600
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG + +++++ + ++ ++GREI VG Y G V+++K++GAF++F+GGQQGLLH
Sbjct: 601 DGNVHIISRSEKSFKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLH 660
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+SE+SHEPV+ ++DV+SVGQQ+++ C G+D RGN+K S KAV
Sbjct: 661 ISEISHEPVTAIADVLSVGQQITVLCTGRDFRGNLKFSRKAV 702
>gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 817
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/734 (59%), Positives = 554/734 (75%), Gaps = 8/734 (1%)
Query: 26 FRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAV 85
F TI L P PA P+ F+EE E+G+ ++ ETGK+ARFA+GAV
Sbjct: 57 FSTISEPVLVTVPEVPAAWRTFPASG-----HVFQEEAEVGNMKMSFETGKLARFASGAV 111
Query: 86 VLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLV 144
V+G+ ETKVL TV + K D +DFLPL V+Y+EKQ+AQG IP T+MRREGAPKERELL
Sbjct: 112 VVGVGETKVLVTVVADYKFDGGKDFLPLQVEYREKQYAQGKIPATFMRREGAPKERELLC 171
Query: 145 GRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGM 204
GR+IDR +RPLFP GF+++ Q++A+VL SDG QDPD++A NA SAAL++SDIPW GPIG
Sbjct: 172 GRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPDVLAVNAASAALVISDIPWKGPIGC 231
Query: 205 IRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPE 264
+RIGR+ G+FIVNP MDE SLSDLNLVYACT EKT+MI+ QAREI+ +D A L LAH E
Sbjct: 232 VRIGRVKGKFIVNPNMDEFSLSDLNLVYACTAEKTVMIETQAREITNQDYVAALHLAHAE 291
Query: 265 AVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEA 324
A K + PQ+ LA K K+ + + + LEKV +LA+ IEAV +P + KFERG+
Sbjct: 292 ATKLIPPQLELAAKVAVLKRPLPVLTVPPEVLEKVRSLAKIAIEAVMGNPQFGKFERGQT 351
Query: 325 LDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYC 384
L I ++VK L E DE S+++LP A D V+K V+R+ I +G+RVDGR L++VR + C
Sbjct: 352 LGAIEEEVKNRLISEGDEVSVKLLPYAFDAVKKEVLRRNIFEKGMRVDGRGLNQVRELQC 411
Query: 385 ESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINE 444
E+G P LHGSS+FSRG+TQVLCTVT+GAP +AQRL+SLVG KRFM+HYSFPPF INE
Sbjct: 412 EAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDAQRLDSLVGIDRKRFMVHYSFPPFSINE 471
Query: 445 VGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMA 504
VG+ GLNRREVGHGTLAEKAL+A+LPPE DFPY+VRV SE +ASDGS+SMATVCGGS+A
Sbjct: 472 VGRTGGLNRREVGHGTLAEKALVALLPPEEDFPYSVRVTSECLASDGSSSMATVCGGSLA 531
Query: 505 LMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGV 564
LMDAGIPL+ HV VSVGLVS DP TG + +YRILTDILGLEDHLGDMDFKIAGT+ G+
Sbjct: 532 LMDAGIPLRSHVGAVSVGLVSVSDPETGRVTEYRILTDILGLEDHLGDMDFKIAGTKKGI 591
Query: 565 TAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDR-NSPRLATLKYD 623
TAIQLDIKPAGIPL I+CE LE A GR QILD ME+ IS+PR R N PR T+
Sbjct: 592 TAIQLDIKPAGIPLHILCEALEPALVGRTQILDFMEQVISSPRDSTARENLPRSGTMNIQ 651
Query: 624 NDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIE 682
D++ RLIGP G+ + I++ + RI++S DG +T+ A++++ + + V+ +G+E+E
Sbjct: 652 QDSIGRLIGPQGSNIKNIQKVSDARINISGDGVVTIFARDQASFDLAKQMVEASVGKEVE 711
Query: 683 VGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQD 742
VGG Y V ++K++GAF+E NGG QGLLH+SE++HE + RVSD +S+GQ+LS+ CIG+D
Sbjct: 712 VGGTYSARVVAIKDFGAFMELNGGYQGLLHISEIAHERIERVSDYLSIGQELSVVCIGRD 771
Query: 743 VRGNIKLSLKAVSP 756
+RGN+KLS K P
Sbjct: 772 LRGNLKLSRKMTLP 785
>gi|257096723|sp|B3DZ86.2|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 707
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 322/704 (45%), Positives = 463/704 (65%), Gaps = 17/704 (2%)
Query: 57 ETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST---VTSSKGDSVRDFLPLT 113
E K +F G + I ETGK+A+FA+G+V + ET VL T VT K D +DFLPL
Sbjct: 3 EYIKRKF--GDQTIVFETGKLAKFADGSVTVSYGETAVLVTAVSVTELKED--QDFLPLQ 58
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+EK A G P Y R+EG P ++E+L R+IDRP+RPLFP G+++E Q++ ++LS+
Sbjct: 59 VEYREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSA 118
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DG+ DPD+MA N SAALM+SDIP+ GP+G +RIG+I G++I+NPT E +SD++LVY
Sbjct: 119 DGQNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYV 178
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
+ LMI+ ARE E++ L AH + + Q LAEK GK K+ ++ E
Sbjct: 179 GSEHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQKELAEKVGKPKRS---CVLFE 235
Query: 294 QTLEKVSNLAEAHIEAVFTDPSY--SKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ L + LAE + + D Y SK ER + L K+ +++ + EE + + + +
Sbjct: 236 ENLAITNRLAELY-SSQLQDALYTSSKTERQKKLAKLKEELTAKILEEFPTATPREITSS 294
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
D+++K + R ++ R DGR +++RPI E+ +P HGSSLF RG+TQ LC TL
Sbjct: 295 YDSLQKTIFRTNVLETKRRCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATL 354
Query: 412 GAPAEAQRLESL-VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
+ EAQ L++ G +KRF+LHY FPPF + EVG+ G +RRE+GHG LAE++LL V+
Sbjct: 355 ASLNEAQELDAYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVI 414
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E DFPY +RV+SE++ S+GSTSMATVCGGS+ALMDAG+PL+ VAG+SVGLV +
Sbjct: 415 PSETDFPYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEED 474
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ Y +LTDILGLEDH GDMDFKIAGTR G+T QLD+K GIPLD++ + + + K
Sbjct: 475 F-DWSRYCLLTDILGLEDHYGDMDFKIAGTRKGITGFQLDLKLRGIPLDVMAKAIFQSQK 533
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R+ ILD M++ I+APR + +++PR+ +K D + LIGP G +KI E+G I+
Sbjct: 534 ARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAEIT 593
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + +E E ++ ++G E+ VGGIY+ V SVK++G F+E G +G
Sbjct: 594 IEDDGTVMIYSSSADSLEAAREMIEDMVG-EVTVGGIYRSKVVSVKDFGCFIEIKGKGEG 652
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
L+H+SELS PV RV VV VG+++ ++CIG D +G K S KA
Sbjct: 653 LVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKA 696
>gi|384917083|ref|ZP_10017216.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylacidiphilum fumariolicum
SolV]
gi|384525533|emb|CCG93089.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylacidiphilum fumariolicum
SolV]
Length = 709
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/704 (44%), Positives = 461/704 (65%), Gaps = 9/704 (1%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQFAQ 123
IG + I ETGK+A+ A+G+V + ET VL TV S ++ +DFLPL V+Y+EK A
Sbjct: 11 IGDQSIIFETGKLAKMADGSVTVSYGETAVLVTVVSVTELKEEQDFLPLQVEYREKAAAA 70
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G P Y R+EG P ++E+L R+IDRP+RPLFP G+++E Q++ ++LS+DG+ DPDI+A
Sbjct: 71 GRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLFPTGYFYETQILGTLLSADGQNDPDILA 130
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
N SAALMLSD+P+ GP+G +RIG+I G++I+NPT E +SD++LVY + LMI+
Sbjct: 131 INGASAALMLSDVPFNGPVGAVRIGQIDGRWILNPTHREREISDVDLVYVGSEHYPLMIE 190
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
ARE E++ L AH + Q LAEKAGK K++ L + + + +++L
Sbjct: 191 GSAREFPEEEFIKALAFAHQSIQDLISAQKELAEKAGKPKRQCVLFKENVEITKWIADLF 250
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKR 363
IE P SK R +L KI Q++ + + + + + + + D +++ + R+
Sbjct: 251 SHQIEEALYVP--SKTLRHNSLAKIKQEITEKIIQSFPQATPMEISWSFDLLQREIFRRN 308
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
++ R DGR L+++RPI E+ P HGS+LFSRG+TQ LC TL + EAQ L++
Sbjct: 309 VLTTQKRCDGRGLEDIRPITIETSIFPRSHGSALFSRGETQALCMATLASLNEAQELDAY 368
Query: 424 -VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRV 482
G +KRF+LHY FPPF + EVGK G +RRE+GHG LAE++L+ V+P E DFPY +RV
Sbjct: 369 GGGEQSKRFLLHYFFPPFSVGEVGKVFGQSRREIGHGALAERSLVPVIPSETDFPYAIRV 428
Query: 483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
+SE++ S+GSTSMATVCGGS+ALMDAG+PL+ +VAG+SVGLV + + Y +LTD
Sbjct: 429 SSEILESNGSTSMATVCGGSLALMDAGVPLKANVAGISVGLVKGGEDDF-DWSHYCLLTD 487
Query: 543 ILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMERE 602
I+GLEDH GDMDFKIAGT+ G+T QLD+K GIPL+++ + + + + RL IL+HM++
Sbjct: 488 IIGLEDHYGDMDFKIAGTKKGITGFQLDLKLKGIPLEVMEKAIFMSKRARLIILEHMDKV 547
Query: 603 ISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAK 661
I+ R + +++PR+ +K D + LIGP G ++I E+G I++ DGT+ + +
Sbjct: 548 INVARPEISKHAPRIEKIKIHPDKIGLLIGPGGKTIKRISAESGAEITIEDDGTVLIYSS 607
Query: 662 NRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV 721
+ +E ++ ++G E+ VGG+Y+ V SVK++G F+E G +GL+H+SELS PV
Sbjct: 608 SAESLESARAMIEDMVG-EVTVGGLYRSKVVSVKDFGCFIEIKGKGEGLVHISELSDTPV 666
Query: 722 SRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGV 765
RV VV VG+++ ++CIG D +G K S KA E KG+
Sbjct: 667 RRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAA--MKELQAKGI 708
>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
Length = 695
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 308/694 (44%), Positives = 452/694 (65%), Gaps = 13/694 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E EIG R I ETGK+A+ ANG+VV+ +TKVL TV + FLPLT++YQE+ +
Sbjct: 6 ETEIGGRTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESESKDMGFLPLTIEYQERMY 65
Query: 122 AQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G IP +Y RRE G P E+E+L R+IDRP+RPLFP G+ E Q++A+V S+D + DPD
Sbjct: 66 AAGRIPGSYFRREIGRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQEFDPD 125
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A N S ALMLSDIP+ GP+ R+G + GQ+++NP+ +L S +NLV A TR +
Sbjct: 126 ILAMNGASMALMLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQINLVVAGTRSAVV 185
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A E++E + + AH ++ QI L E+AGK K+E +++ EKV
Sbjct: 186 MVEGKASEMAEDTVLEAIFFAHAGIQPLIDLQINLREQAGKAKREVVAPTVNQALKEKVE 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+A + ++ V T + K R K+ ++V ++ E ++ +V + + +K+V+
Sbjct: 246 AVAASGMDEVVT--TAEKMARAARYSKLKEEVLAQIDPELYQQPSEV-TELLSGYKKQVM 302
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RI+ +G+R+DGR ++VRPI CE G LP HGS+LF+RG+TQ L TLG+ + Q L
Sbjct: 303 RDRIVGKGMRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDEQHL 362
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
E L G +RFMLHY+FPPFC+ EV G +RR++GHGTLA + + AVLP + FPYT+
Sbjct: 363 EGLGGDVYRRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGIEAVLPANDSFPYTL 422
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SEV+ S+GS+SMATVCGGS+ALMDAG+P++ V+GV++GL+ E D +L
Sbjct: 423 RVVSEVLESNGSSSMATVCGGSLALMDAGVPVKAPVSGVAMGLIKEGDQVV-------VL 475
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+ GTR G+T +Q+DIK G+ I+ + L A KGR+ IL+ ME
Sbjct: 476 TDILGDEDHLGDMDFKVVGTRQGITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILEKME 535
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+S+PRT ++P+ TLK D +R +IGP G + R++ E +I V DGT+ +
Sbjct: 536 GALSSPRTVVSEHAPKYVTLKIHPDKIRDIIGPGGKVIREMTTEFDSKIDVEDDGTVKIF 595
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + +++++ I EVG IY+G V ++KE+GAFV+ G G++H+SEL+++
Sbjct: 596 SNSSESANALIKRIQQITAVP-EVGAIYEGEVRTIKEFGAFVQILPGTDGMVHISELAND 654
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
V +V+DVV G + ++ I D RG I+LS KA
Sbjct: 655 RVKKVTDVVKEGDIIKVKVIDIDNRGRIRLSRKA 688
>gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 679
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 301/656 (45%), Positives = 423/656 (64%), Gaps = 12/656 (1%)
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY+E+ +A+G IP+T+ RREGAPKERE+L R+IDR RPLF F EV + V++S
Sbjct: 2 VDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMAS 61
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DG +DP ++A N SAAL S IPW GPIG +R+ + IV+P+ + + SD L YA
Sbjct: 62 DGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPSDEVVESSDFTLFYA 121
Query: 234 CTREKTLMIDVQARE---ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
+ LMI+ Q+ + + E + LR AH + + PQI LA + GK K+E +
Sbjct: 122 GNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIPPQIALANEIGKPKQELAAAP 181
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE------ECDEES 344
++ + ++A+A + A++ + K ERG + ++ +V + L + E E S
Sbjct: 182 VTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELMDSHPEWMESGEVS 241
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
+L A V RV+R+R++ EGVRVDGR + E+R + +G +PI+HGS+LF RG+TQ
Sbjct: 242 EAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQ 301
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TVTLG+ ++QRL++L GP +KR MLHYSFP F +NE G R GL+RREVGHG LAEK
Sbjct: 302 ALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGAR-GLSRREVGHGALAEK 360
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
+LL V P E+ FP+ VRVN+E + S+GS+SMA VC GSMALMDAG+PL EHV +S+GLV
Sbjct: 361 SLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGLV 420
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
+ D TGE+K Y ++ DI+GLED LGDMDFKIAGTR GVT IQLD KPAGIPLDI+ E
Sbjct: 421 MDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDCKPAGIPLDILIEA 480
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L+ A R +++D MER +S P++ ++PR + +LIGP G+ + +E+E
Sbjct: 481 LDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLIGPQGSNIKALEKE 540
Query: 645 TGGRISV--SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVE 702
TG ++SV DG L V +N++ + + ++ + +EVG Y V V +G +
Sbjct: 541 TGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYATTVKEVLPFGCVLT 600
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
G GLLHVSE++HE VSDV SVG Q+ ++C+ +D RG+IK S KA+ PRP
Sbjct: 601 TASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKWSRKALLPRP 656
>gi|385809228|ref|YP_005845624.1| Polyribonucleotide nucleotidyltransferase [Ignavibacterium album
JCM 16511]
gi|383801276|gb|AFH48356.1| Polyribonucleotide nucleotidyltransferase [Ignavibacterium album
JCM 16511]
Length = 704
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 310/703 (44%), Positives = 464/703 (66%), Gaps = 17/703 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS---KGDSVRDFLPL 112
+ K+E EIG +L ++ETG+ AR ANGAV++ +T VL T +S K D +DF PL
Sbjct: 1 MAIIKKEVEIGGKLFSIETGRYARQANGAVMVRYGDTMVLVTAVASEDVKDD--QDFFPL 58
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
V+Y+EK A G IP Y++REG P E+E+L R+ DRPIRPLFP F +E QV+A VLS
Sbjct: 59 QVEYREKTSAAGKIPGGYIKREGRPTEKEILSARLCDRPIRPLFPKNFMNETQVIAMVLS 118
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
DG+ D D++AA SAAL +SDIP+ GP+G +R+GR+ GQF++NPT +L +SD+ LV
Sbjct: 119 YDGENDADVLAACGASAALTISDIPFDGPMGEVRVGRVDGQFVINPTHQQLEVSDMELVV 178
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T + +M++ +A+E+SE ++ LR A E K +E Q+ L ++AGKQK +I
Sbjct: 179 AGTSDSIMMVEGEAKELSESEMLEALRFAQTEIRKIVELQLELQKEAGKQKWIVPEKVID 238
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
E V+ LA ++++ +K ER ++ + VK +L E+ E+ +V+ + +
Sbjct: 239 ENLKNDVNELALEKLKSIVYS-VLTKEERSAKNKELAEFVKTSLAEKYPEQE-KVIAELL 296
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K ++R+RI+ EG+R+DGR+ ++RPI E+ LP HGS+LF+RG+TQ L TVTLG
Sbjct: 297 HDMEKELMRQRILTEGIRLDGRKTTDIRPITIETSLLPRTHGSALFTRGETQSLTTVTLG 356
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++ L+ TK+FMLHY+FPPF + EVG+ G++RRE+GHG LAE++L V P
Sbjct: 357 TKNDEQLVDGLLQEYTKKFMLHYNFPPFSVGEVGRLTGVSRREIGHGNLAERSLKQVFPA 416
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E+ FPYTVRV S+++ S+GS+SMATVC GS+A+MDAGIP++ V+G+++GLV E G
Sbjct: 417 EDVFPYTVRVISDILESNGSSSMATVCAGSLAMMDAGIPIKAAVSGIAMGLVKE-----G 471
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E Y IL+DILG EDHLGDMDFK+AGT G+T +Q+DIK GI +I+ + L A +GR
Sbjct: 472 E--QYAILSDILGNEDHLGDMDFKVAGTSKGITGLQMDIKIQGISFEIMEKALAQAKEGR 529
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
++IL+ M + I+ PR +PRL T+K D D + +IGP G + ++ G I +
Sbjct: 530 MKILEIMNQAIAEPRPHLSPYAPRLITMKIDTDQIGLVIGPGGKTIQGMQRLFGVEIVID 589
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + NR +K E + + EVG +Y+GVVT + ++GAFVE G++GLL
Sbjct: 590 EDGTVNIASPNRENAQKCKEYIKKLTATP-EVGEVYEGVVTKIMDFGAFVEILPGKEGLL 648
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+S++ ++ V++VSD VG ++ ++ + + G + LS K V
Sbjct: 649 HISQIDNKRVNKVSDYFKVGDKVLVKLMKIE-DGKLSLSRKEV 690
>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
Length = 699
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 299/697 (42%), Positives = 454/697 (65%), Gaps = 17/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K E E + +T+ETGK+AR A+GA ++ ETK+L TV S+K ++R DF PLTV+Y
Sbjct: 5 KVEIEFNGQPLTIETGKMARQADGATIVTYGETKILCTVVSAK--TMREGQDFFPLTVNY 62
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK +A G IP ++ RRE ERE L+ R+IDRP+RPLFP G+ +E Q++ +V+S+D
Sbjct: 63 QEKFYASGKIPGSFFRRERGATERETLICRLIDRPMRPLFPKGYLYETQIIPTVISADCV 122
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
DPD ++ A SA++ +SDIP+GGPI +R+GR+ G+FI NPT+++ SD+ +V A ++
Sbjct: 123 NDPDTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDIEIVVAGSK 182
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ +A ISE ++ + H +E Q +LAE G +K+E+ +
Sbjct: 183 DAIMMVEGEADLISEDEMLEAVFFGHQAIQPLIEMQTKLAELVGVEKREFIVPETDAALE 242
Query: 297 EKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
EK+ +LA+ +E T +K ER AL +I D+++ L EE + S ++ + ++
Sbjct: 243 EKIVSLAQGRVEKAVT--IRAKQERYAALKEIRADIQEQLAEEFEGRSDEI-SAIMGSIE 299
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
KRV+R+ + + +R+DGR+++E+RPI CE G LP HGS+LF+RG+TQ L + TLG ++
Sbjct: 300 KRVVRQSVTKDQIRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASD 359
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
QR++++ G K+FMLHY+FPPFC+ E R+ RRE+GHG LAE++ ++P +DF
Sbjct: 360 EQRMDNIQGMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDF 419
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYTVR+ SE++ S+GS+SMA+VCG SM+LMDAG+P ++ VAG+++GL+ E D D
Sbjct: 420 PYTVRIVSEILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGD-------D 472
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
IL+DILG EDHLGDMDFK+ GT+ GV A+Q+DIK G+ DI+ L A +GRL IL
Sbjct: 473 IAILSDILGDEDHLGDMDFKVTGTKEGVAALQMDIKIDGVTRDIMQRALAQAKEGRLHIL 532
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ISAPR +PR+ T+ D +R +IG G R I E TG I + DG
Sbjct: 533 GEMAKAISAPREDMSPYAPRITTVFVKPDQVRTVIGSGGKTVRGIIEATGCGIDIEDDGR 592
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + N + + + + + EVG +Y G V + ++GAFVE G GL+HVSE
Sbjct: 593 INISSSNGDAAKAAAQMIKELT-QSPEVGKLYNGTVKKIMDFGAFVEIFSGTDGLVHVSE 651
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
L+ E V++V+D+++ G ++ ++CIG D +G IKLS K
Sbjct: 652 LAKERVNKVTDILNEGDKVLVKCIGVDRQGKIKLSRK 688
>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Methylacidiphilum infernorum V4]
gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Methylacidiphilum infernorum V4]
Length = 669
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 303/661 (45%), Positives = 438/661 (66%), Gaps = 12/661 (1%)
Query: 97 TVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLF 156
+VT K D +DFLPL V+Y+EK A G P Y R+EG P ++E+L R+IDRP+RPLF
Sbjct: 6 SVTELKED--QDFLPLQVEYREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLF 63
Query: 157 PAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIV 216
P G+++E Q++ ++LS+DG+ DPD+MA N SAALM+SDIP+ GP+G +RIG+I G++I+
Sbjct: 64 PKGYFYETQILGTLLSADGQNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGRWII 123
Query: 217 NPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLA 276
NPT E +SD++LVY + LMI+ ARE E++ L AH + + Q LA
Sbjct: 124 NPTHREREISDIDLVYVGSEHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQKELA 183
Query: 277 EKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSY--SKFERGEALDKIGQDVKK 334
EK GK K+ ++ E+ L + LAE + + D Y SK ER + L K+ +++
Sbjct: 184 EKVGKPKRS---CVLFEENLAITNRLAELY-SSQLQDALYTSSKTERQKKLAKLKEELTA 239
Query: 335 ALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHG 394
+ EE + + + + D+++K + R ++ R DGR +++RPI E+ +P HG
Sbjct: 240 KILEEFPTATPREITSSYDSLQKTIFRTNVLETKRRCDGRGPEDIRPIAIETSVVPRSHG 299
Query: 395 SSLFSRGDTQVLCTVTLGAPAEAQRLESL-VGPPTKRFMLHYSFPPFCINEVGKRVGLNR 453
SSLF RG+TQ LC TL + EAQ L++ G +KRF+LHY FPPF + EVG+ G +R
Sbjct: 300 SSLFCRGETQALCMATLASLNEAQELDAYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSR 359
Query: 454 REVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQ 513
RE+GHG LAE++LL V+P E DFPY +RV+SE++ S+GSTSMATVCGGS+ALMDAG+PL+
Sbjct: 360 REIGHGALAERSLLPVIPSETDFPYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLK 419
Query: 514 EHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKP 573
VAG+SVGLV + + Y +LTDILGLEDH GDMDFKIAGTR G+T QLD+K
Sbjct: 420 TSVAGISVGLVKGKEEDF-DWSRYCLLTDILGLEDHYGDMDFKIAGTRKGITGFQLDLKL 478
Query: 574 AGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGP 633
GIPLD++ + + + K R+ ILD M++ I+APR + +++PR+ +K D + LIGP
Sbjct: 479 RGIPLDVMAKAIFQSQKARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGP 538
Query: 634 LGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVT 692
G +KI E+G I++ DGT+ + + + +E E ++ ++G E+ VGGIY+ V
Sbjct: 539 GGKTIKKISAESGAEITIEDDGTVMIYSSSADSLEAAREMIEDMVG-EVTVGGIYRSKVV 597
Query: 693 SVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
SVK++G F+E G +GL+H+SELS PV RV VV VG+++ ++CIG D +G K S K
Sbjct: 598 SVKDFGCFIEIKGKGEGLVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRK 657
Query: 753 A 753
A
Sbjct: 658 A 658
>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
Length = 696
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 315/689 (45%), Positives = 439/689 (63%), Gaps = 15/689 (2%)
Query: 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVI 126
+R IT+ETGK+A AN AV + ET VL T SS + DF PL V Y+EK A G
Sbjct: 14 NRPITIETGKMALLANAAVTVTQGETVVLVTACSSAPRAGIDFFPLMVAYREKYSAAGKF 73
Query: 127 PNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANA 186
+M+RE P E E+L R+ DRP+RPLFP GFYHEVQ+ A VLS D DPD +A
Sbjct: 74 LGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDPDTLAMLG 133
Query: 187 TSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQA 246
+SAALMLSD+P+ GP+G +R+G++ G+F+ NPT +++ S L L+Y+ T KT+MI+
Sbjct: 134 SSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIYSGTPGKTIMIEGDC 193
Query: 247 REISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAH 306
E+SE+ L L+ A + + Q+ L GK KK+Y I E V+
Sbjct: 194 DELSEERLFEALKYADSKVEVMAKAQLELQATFGKAKKDYATDKIEEDVKAAVATAISGK 253
Query: 307 I-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRII 365
I EA + ERG ALD + V++AL+ + DEE L +A + + IR+ II
Sbjct: 254 IDEACLV---IDRTERGAALDAVYATVEEALKAQFDEERHGELKEAYSHLIEMNIRRLII 310
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
EG R DGR +++RP+ E+ +P HGS+LF+RG+TQ L TVTLG AQ E++ G
Sbjct: 311 EEGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRG 370
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
K F LHY+FP F + E G+ +G RE+GHG LAE+AL ++P D+PYTVRV SE
Sbjct: 371 RYDKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMPA--DYPYTVRVISE 428
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
VM S+GSTSMA++CGGS+ALMDAG+PL++ VAG+SVGLV E D Y ++TDILG
Sbjct: 429 VMGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADK-------YVMITDILG 481
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
EDH GDMDFK+AGTR G+TA QLD+K AG+ LD++ E + R+ ILD M+ +S+
Sbjct: 482 SEDHYGDMDFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGCLSS 541
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRS 664
+ + ++P++ +K + + + LIGP G + I EETG I+V DGT+ V +++
Sbjct: 542 AQEEISDHAPQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFTADKT 601
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
++ +E+V+ E E G IY+GVV SVKE+GAFVE GG QGLLH+SEL+ V +V
Sbjct: 602 ALKAAIEQVESYC-FEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRVEKV 660
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+DVV+ G ++S++ + D RG ++LS KA
Sbjct: 661 TDVVNEGDKVSVKILEIDDRGRMRLSRKA 689
>gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
DG1235]
gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
DG1235]
Length = 745
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 310/697 (44%), Positives = 451/697 (64%), Gaps = 24/697 (3%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQFAQGVI 126
IT TG +A A+GAV + ET + + T +K +VR D+ PLTVDY+EK A G I
Sbjct: 14 ITFSTGDVANLASGAVTVSTGETSLFVSATVAK--TVREGQDWFPLTVDYREKYTAAGRI 71
Query: 127 PNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANA 186
P Y +REG P E+E+L R+ DRP RPLFP GF +EVQ++ VLS+D D DI+ N
Sbjct: 72 PGGYFKREGRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGFVLSADQVNDADILMVNG 131
Query: 187 TSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQA 246
SAAL +SDIPW GPIG +R+G+I G F+ NPT++E SDL+L+Y T ++ LMI+ A
Sbjct: 132 ASAALAISDIPWNGPIGAVRVGQIDGHFVANPTIEEQYASDLDLIYVGTEDEMLMIEGSA 191
Query: 247 REISEKDLEAGLRLAHPEAVKYLEPQI----RLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ISE+ L AH K ++P I +L E+AGK+KK + L ++ + + V++L
Sbjct: 192 DQISEERFLEALEYAH----KAIQPIIAGIKQLREEAGKEKKTFPLCVLEDDVRQIVNSL 247
Query: 303 AEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-DEESLQVLPKAVDTVRKRVI 360
I EA + K ER +D++ + AL+E+ D+ + L A++ + +
Sbjct: 248 VGDRIGEAC---AAGDKQERNAKIDELKVLAEGALQEKYGDDYNPAQLNMAMEELLEHTY 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK I+ GVR GR+ +E+R + + G +P +HGS+LFSRG+TQ L TLG +AQ L
Sbjct: 305 RKSILDNGVRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQAQSL 364
Query: 421 ESLV-GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
+++ GP TK FMLHY+FPPF + E G+ RRE+GHG LAE++LL V+P E+ FPY+
Sbjct: 365 DAITGGPTTKSFMLHYNFPPFSVGETGRFGTPGRREIGHGALAERSLLPVVPSEDVFPYS 424
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R++SE+MAS+GSTSMA++CGG ++LMDAG+P+ + VAG+SVGLVSE D G+ + I
Sbjct: 425 IRISSEIMASNGSTSMASICGGCLSLMDAGVPITDPVAGISVGLVSEFD-ENGKPAKHHI 483
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDH GDMDFKIAGT+ G+T QLD+K G+P DI+ + + + RL+IL +M
Sbjct: 484 LTDILGEEDHFGDMDFKIAGTKNGITGFQLDLKINGLPFDIVKASVAQSREARLEILANM 543
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD---GTL 656
+ APR + +PR+ T++ + + + LIGP G R+I E TG ++ ++D G +
Sbjct: 544 ATALEAPREEVAATAPRITTVQINPEKIGALIGPGGKNIRRIVEITGAQVDINDDNSGRV 603
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
V A + M++ L ++D + G EIE G IY+G+V + KE+G FVE GQ+GL+H+SEL
Sbjct: 604 NVYATSEEAMKRALHEIDLVCG-EIEEGKIYRGIVKATKEFGCFVEVLPGQEGLVHISEL 662
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+ V DV G ++ ++C+G D RG ++LS KA
Sbjct: 663 ADFRVRNTEDVCKAGDEMVVKCLGVDERGRVRLSRKA 699
>gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase)
[Candidatus Kuenenia stuttgartiensis]
Length = 705
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 309/705 (43%), Positives = 457/705 (64%), Gaps = 20/705 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTV 114
+ FK E IG+R +++ETG++AR A+GAV++ ET VL T V++S+ DFLPLTV
Sbjct: 1 MAQFKVEKLIGNRALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+EK +A G P + +REG P ++E+L R+IDRPIRPLFP ++ EVQVM+ VLS+D
Sbjct: 61 DYREKTYAAGKFPGGFFKREGRPSQKEILTMRLIDRPIRPLFPDTYFREVQVMSIVLSAD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI+A SAAL +S IP+ P G +R+G+I +FI+NPT EL+ S +++V +
Sbjct: 121 KENDPDILAMVGASAALSISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQSSMDIVISG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + +M++ A+EI E+ + + H + + Q L EK GK+K+ S ++++
Sbjct: 181 TEDAVMMVEASAKEIPEEQMVDAIMFGHAAIKEIITLQHELIEKCGKEKQIVAPSRMNKE 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-----DEESLQVLP 349
+E++ + + V + + K R EALD+I + + E C D + + +
Sbjct: 241 LMEEIKQ--KYYTAIVEKNLTPGKGYRKEALDEI---LAAIINEYCVEGVEDAPTPKEIK 295
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+TV V+R++I+++G+R D R L ++RPI CE G LP +HGS+LF+RG+TQ + V
Sbjct: 296 AIFETVETIVVREQIVSKGLRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVV 355
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG ++ Q+++ L +K+FML Y+FPPFC+ E G RRE+GHG LAE+AL V
Sbjct: 356 TLGTTSDEQKVDGLEDEYSKKFMLDYNFPPFCVGETKPLRGPGRREIGHGALAERALAEV 415
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LPP N FPYT RV S++ S+GS+SMA+VCGG++ALMDAG+P++ VAG+++GLV E +
Sbjct: 416 LPPPNKFPYTTRVVSDITESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEENS 475
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
IL+DILG EDHLGDMDFK+AGT GVTA+Q+DIK AGI I+ + L A
Sbjct: 476 VC-------ILSDILGTEDHLGDMDFKVAGTAQGVTALQMDIKIAGITEKIMRDALAQAR 528
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GRL IL +E+ I PR + +P++ +K + + + +IGP G +KI+EETG +I
Sbjct: 529 EGRLHILQELEKVIEKPREKISVYAPKIVQIKINPEKIGMIIGPGGKNIKKIQEETGAKI 588
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A EK ++ + +E+EVG YKG V S+KEYGAFVE G
Sbjct: 589 EIEDDGTVIISATLGESAEKAKTWIENMT-KEVEVGKTYKGKVLSIKEYGAFVEIIPGHD 647
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
GL+H+SELS+E V + DVV VGQ++ ++ IG D + +KLS KA
Sbjct: 648 GLVHISELSYEYVEKAGDVVEVGQEIMIKVIGIDDQKRVKLSRKA 692
>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
Ellin428]
gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
Ellin428]
Length = 716
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/693 (42%), Positives = 443/693 (63%), Gaps = 7/693 (1%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKV-LSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
IG+ IT+ETGK+A+ A+GAV + ET V +S V+++ +DF PLTVDY+EK A
Sbjct: 9 HIGAHPITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYREKAAA 68
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G P Y +REG P E+E+L R+ DRP+RPLFP G+ ++ Q++ +LS+DG+ DPDI+
Sbjct: 69 VGKFPGGYFKREGRPSEKEILTCRMTDRPLRPLFPKGYLYDTQIIGVLLSADGEVDPDIL 128
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
N SAALM+SDIP+ GP+G +R+GR+ GQFI NPT +++ SDL+LVY +MI
Sbjct: 129 FINGASAALMVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLVYVGNATDVIMI 188
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ E+ E+ A L A E K + Q LA+K GK K++ L + ++ +E +
Sbjct: 189 EGAGDEVPEEQFIAALHFAQTEVSKIVALQQELAQKVGKAKRQAALFTVKDELMEVAYAV 248
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRK 362
A IEA + SK R +A+ + +V A+ + E + + +A D ++K+ R
Sbjct: 249 AGDRIEAAIYNK--SKVARQKAIAALKDEVSAAIIAKYPEATKFEISQAFDYLQKKAFRV 306
Query: 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLES 422
I+ + R DGR LD++R + E G LP HGS+LF RG+TQ + TL EAQ L+
Sbjct: 307 SILDKQTRCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADEAQELDG 366
Query: 423 LV-GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
G TKRF+LHY+FPPF + E G+ RRE+GHG LAE+++ V+P FPY +R
Sbjct: 367 YTGGETTKRFILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTKFPYAIR 426
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V+SEVM S+GSTSMA+VC G +AL+DAG+PL++ VAG+S GLV+E + G++ Y +LT
Sbjct: 427 VSSEVMESNGSTSMASVCSGVLALLDAGVPLKKSVAGISCGLVTEFR-ADGQLDRYTMLT 485
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI+G EDH GDMD+K+ GTR GVT QLD+K GIPL ++ E + R+++LD M+
Sbjct: 486 DIIGSEDHFGDMDWKLCGTRDGVTGFQLDLKLPGIPLKMMEEAIYRTRDARMRVLDVMDS 545
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+S PRT+ + +PR+ T++ + D + +IGP G + I ETG I++ DG++ + +
Sbjct: 546 ALSQPRTELSKYAPRIETIRINPDKIGLIIGPGGKTIKGIVAETGAEINIEDDGSVHIYS 605
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N + + + ++ + +EI VG +Y+G V ++KE+G FVE G+ G++H+SEL+
Sbjct: 606 NNGDSLLRAKQIIEGMT-KEISVGEMYQGRVVTIKEFGCFVEVLPGKDGMVHISELADFR 664
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
V+RV DVV +G + ++CIG D +G +KLS KA
Sbjct: 665 VNRVEDVVKMGDVIWVKCIGVDEKGRVKLSRKA 697
>gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
4252]
gi|345303219|ref|YP_004825121.1| polyribonucleotide nucleotidyltransferase [Rhodothermus marinus
SG0.5JP17-172]
gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
4252]
gi|345112452|gb|AEN73284.1| polyribonucleotide nucleotidyltransferase [Rhodothermus marinus
SG0.5JP17-172]
Length = 772
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/721 (43%), Positives = 454/721 (62%), Gaps = 29/721 (4%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQ 120
EF G L LETG++A+ ANGAVV+ +T VL T V + + + F PLTV+Y+EK
Sbjct: 11 EFAPGKSL-RLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREKF 69
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G IP +++REG P ++E+L R+IDR IRPLFP GF+HEVQ++ V+S+D + D D
Sbjct: 70 AAGGRIPGGFIKREGRPTDKEILSSRLIDRAIRPLFPDGFFHEVQIICYVISADDRYDAD 129
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A SAAL+L+ P+ GPI +R+GR+ GQF+VNPT+ EL SD+NLV A + +
Sbjct: 130 VLAGTGASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDINLVVAGKEDAIV 189
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK-EYKLSMISEQTLEKV 299
M++ + +E+SE+D+ L +AH K Q+ G+ + Y+ + + E+ + +V
Sbjct: 190 MVEGEMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAHGRPEPFPYQTTTLPEELVARV 249
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP---------- 349
LA +EA P Y K E L++IG++ AL D E QVL
Sbjct: 250 RELAVPKLEAHLRAP-YDKQTFYEGLEQIGEETVAALLGTTDAEGNQVLAEATPEGWTAD 308
Query: 350 ---KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
KAV V + V+R+ I+ EG R+DGR LDE+RPI+ E G LP +HGS++F+RG+TQVL
Sbjct: 309 QIRKAVSQVTREVMRQMILREGRRIDGRSLDEIRPIWMEVGYLPRVHGSAIFTRGETQVL 368
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
+VTLG + Q ++ + KRF LHY FPPFC E+ G RRE+GHG LAE+AL
Sbjct: 369 ASVTLGTSKDVQMIDQIFVQGDKRFFLHYEFPPFCTGEIRFLRGPGRREIGHGYLAERAL 428
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
A+LP E+ FPYT+RVN++V+ S+GS+SMA+VC GS+ALMDAG+P+++HVAGV++GL+ E
Sbjct: 429 AAMLPDESSFPYTIRVNADVLESNGSSSMASVCAGSLALMDAGVPVKKHVAGVAMGLIKE 488
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D ILTDILG EDHLGDMDFK+AGTR G+TA Q+DIK G+ +I+ LE
Sbjct: 489 GD-------QVAILTDILGTEDHLGDMDFKVAGTRDGITACQMDIKIGGLTREIMQRALE 541
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A + R+ ILD ME+ I APR + +PRL + D + + +IGP G + + I+ ET
Sbjct: 542 QARRARMYILDLMEQTIEAPRPELSPYAPRLTQITIDPEFIGAVIGPGGRVVQGIQRETN 601
Query: 647 GRISVSD----GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVE 702
I + + G +TV A N+ ++ +E + I+ EVG Y+G+V S++ +GA VE
Sbjct: 602 TTIEIEERDGVGVVTVAATNQENAQRAIEMIKQIVAVP-EVGAEYEGIVRSIQSFGAIVE 660
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G++GLLH+SEL H V + D + VG ++ ++ I G ++LS KA P PE +
Sbjct: 661 IMPGKEGLLHISELDHGYVRDIHDYLKVGDKVRVKLIEIREDGKLRLSRKAFLPPPEPEA 720
Query: 763 K 763
K
Sbjct: 721 K 721
>gi|336236003|ref|YP_004588619.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidasius C56-YS93]
gi|335362858|gb|AEH48538.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 712
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 304/703 (43%), Positives = 453/703 (64%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K F I R + +E G++A+ ANGAV++ +T VLST T+SK DF PLT
Sbjct: 1 MEQEKRVFSIDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQ+++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D P++ A +S AL +SDIP+ GPI + +GR+ G+F++NPT+++ SD++LV A
Sbjct: 121 DQDCSPEMAALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H + + + Q +A + GK+K E L +
Sbjct: 181 GTKDAINMVEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDP 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAV 352
Q K+ LAEA I+ P K R A++++ V K E+E DEE+L+ + + +
Sbjct: 241 QLEAKIRQLAEADIKRAVQVPE--KLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K +R+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLG
Sbjct: 299 HKLVKEEVRRLITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L TKRFM HY+FPPF + E G G RRE+GHG L E+AL V+P
Sbjct: 359 ALGDVQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D
Sbjct: 419 EKEFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
Y ILTDI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ +I+ E L A KGR
Sbjct: 475 ---HYTILTDIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
++ILDHM + I PR + + +P++ T++ + D +R +IGP G KI +ETG +I +
Sbjct: 532 MEILDHMMQTIREPRKELSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N ++ EK + ++ I+ RE+EVG IY G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTIFISSVNEAMNEKAKQIIEDIV-REVEVGQIYLGKVKRIEKFGAFVELFNGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V RV DVVS+G ++ ++ + D +G + LS KAV
Sbjct: 651 HISELAEERVGRVEDVVSIGDEILVKVMEIDKQGRVNLSRKAV 693
>gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC
51908]
gi|226702688|sp|B1KRQ5.1|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC
51908]
Length = 702
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 297/692 (42%), Positives = 446/692 (64%), Gaps = 12/692 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR AN AV+ M +T VL TV K + V RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PD+
Sbjct: 68 AAGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +SD+P+ GP+G+ R+G G++++NP + +L+ SDL+LV A T+ LM
Sbjct: 128 ISMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAGTQGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + G+ H + + L +AGK K ++ +EK+
Sbjct: 188 VESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAEDTDLVEKIKG 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K ER +A+ + L EE + L+ + K + ++ K+V+R
Sbjct: 248 LAEAELTNAYQ--IADKHERRDAVIALKNAAVAKLVEENADVDLREVDKLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII+ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ+++
Sbjct: 306 SRIISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVD 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS R ++PR+ TLK + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 539 AISGHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG +Y G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 599 ANGEATKEAIRRIEEITA-EVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ VSD + VGQ++ ++ + D +G ++LS+K
Sbjct: 658 VANVSDYLQVGQEVKVKVMEVDRQGRVRLSMK 689
>gi|222055786|ref|YP_002538148.1| polynucleotide phosphorylase/polyadenylase [Geobacter daltonii
FRC-32]
gi|257096693|sp|B9M1G5.1|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter daltonii
FRC-32]
Length = 696
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 302/696 (43%), Positives = 437/696 (62%), Gaps = 15/696 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K + E G R IT+ETGK+A+ A+GAVV+ +T+VL T ++K +DF PLTV+YQE
Sbjct: 4 KVQVECGGRTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQE 63
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +RE P + E L R+IDRPIRPLFP F ++ Q+MA+V+S+D D
Sbjct: 64 KAYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDND 123
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
P I++ SAALM+SDIP+ GPI +++GRI G+F+ NP +E+ SD+ +V A +++
Sbjct: 124 PGILSMVGASAALMVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSDIEIVVAASKDA 183
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A E+SE+D+ + H L Q+ LAEKAG K+E +++E K
Sbjct: 184 IIMVEGSAAEVSEEDMLEAIFFGHAAIQGLLAAQVELAEKAGVAKREVLPPVVNEALKAK 243
Query: 299 VSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
V LA + + EAV SK ER +D I +V AL EE E + + + +
Sbjct: 244 VKELAYSRMKEAVRIK---SKVERHNTIDTITGEVLTALAEEF-EGAAKEIKGFLGDFEY 299
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R+ II +G R+DGR +R I E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 300 DLVREHIIKDGERIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDE 359
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR++SL G KRF+LHY+FPPF + E R+ RRE+GHG LAE+AL V+P FP
Sbjct: 360 QRIDSLFGESKKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALARVVPKHESFP 419
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ S+++ S+GS+SMA+VCGGSM++MDAGIP++ VAG+++GL+ E D D+
Sbjct: 420 YTIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGD-------DF 472
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L+ AH+GRL IL
Sbjct: 473 AILSDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIGGVTREIMGVALKQAHEGRLHILS 532
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M I + + +PR+ T+ D +R +IG G R I E TG I + D G +
Sbjct: 533 KMAETIGTSKAELSTFAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKI 592
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + +++ + ++ + + E E G +Y G+V V E+GAFVE G GL+H+SEL
Sbjct: 593 NIASTDKAACDMAIKMIRDLTA-EAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISEL 651
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V V+DV+ G ++ ++CIG D +G IKLS K
Sbjct: 652 DTERVKNVTDVLKEGDKVLVKCIGIDKQGKIKLSRK 687
>gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
alkaliphilus AHT2]
Length = 704
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/705 (43%), Positives = 455/705 (64%), Gaps = 20/705 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
K E+ R +T+ETG++A+ A G+V++ ++ VL T T+++ DFLPLT++YQE
Sbjct: 4 KVSIELAGRKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREPKENIDFLPLTIEYQE 63
Query: 119 KQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
+ +A G IP ++ RRE G P E E L RIIDRP+RPLF G+ HE Q++A+VLS+D +
Sbjct: 64 RFYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQEN 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPD+MA SAAL +S +P+ GPI +R+G I GQ+++NP+ ++ S L+L+ A + +
Sbjct: 124 DPDLMAMLGASAALSVSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSRLDLIVAGSEK 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ A +SE++++ G+ AH L Q L AGK K E K + E +
Sbjct: 184 AVVMVEGGADSLSEEEVKNGIFFAHESLQPLLAMQKELQAAAGKPKLEVKPRQVDEALRQ 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
+V LA + V T + K +RGEA + + V ALE E E + + LP + +
Sbjct: 244 RVQELAATEMAQVIT--TVDKQQRGEASAMLEEKVLAALEGELAEAAGEQLPVKLQEAKG 301
Query: 358 R-------VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+IR+RI E +R+D R+LDEVR I E G LP +HGSSLF+RG+TQVL + T
Sbjct: 302 LLKELKKKMIRERITKERIRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSAT 361
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG+ + QR+ESL G K FMLHY+FPP+C+ EV G +RR++GHG LAE+A+ AVL
Sbjct: 362 LGSGEDEQRIESLSGMSFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAVQAVL 421
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P FPYT+RV SEV+ S+GS+SMATVCG S++LMDAG+P+++ V+G+++GL+ E D
Sbjct: 422 PDAESFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGD-- 479
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
D IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK G+ +I+ L A +
Sbjct: 480 -----DIAILSDILGDEDHLGDMDFKVAGTEDGITALQMDIKLEGVSREIMSAALNQARE 534
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M+ I+APR+ ++P++ ++ + D +R LIGP G + + I E G ++
Sbjct: 535 GRLHILGKMKEAIAAPRSDVPAHAPKMFSITINPDKIRDLIGPGGKVIKAITTEYGIKMD 594
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
VS DG + + A + EKV E+V I E EVG +YKGVV V ++GAFV+ G G
Sbjct: 595 VSDDGKVKIFAPTGEIAEKVKEEV-LSITAEAEVGKVYKGVVQKVMDFGAFVQILPGTDG 653
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+SEL H V++V+DV++ G ++ ++ + D RG I+LS KA+
Sbjct: 654 LVHISELEHHRVNKVTDVLNEGDEVMVKVLEIDPRGKIRLSRKAL 698
>gi|404496453|ref|YP_006720559.1| polynucleotide phosphorylase/polyadenylase [Geobacter
metallireducens GS-15]
gi|418064821|ref|ZP_12702197.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens RCH3]
gi|123729281|sp|Q39VA1.1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78194056|gb|ABB31823.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens GS-15]
gi|373563094|gb|EHP89295.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens RCH3]
Length = 697
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 303/695 (43%), Positives = 431/695 (62%), Gaps = 13/695 (1%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K + G R IT+ TGK+A+ A+GAV++ ET VL T + K +DF PLTV+YQE
Sbjct: 5 KVNVDFGGRTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E E L R IDRPIRPLFP F ++ Q+MA+V+S+D D
Sbjct: 65 KAYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDND 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
P I+A SAAL +SDIP+ GPI +++GR+ G+FI NPT ++L+ SDL +V A +R+
Sbjct: 125 PGILAMIGASAALEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASDLEVVVAASRDA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A EISE DL + H ++ QI L ++AG K+E + E K
Sbjct: 185 VIMVEGGAAEISEADLLEAIFFGHASVQPIIDAQIELRKQAGVPKREIAPPAVDEALGAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V LA A ++ SK ER + I + ALE + ++ +D
Sbjct: 245 VKELAYAQMKDAVR--IRSKQERHNRISAIADETVAALEADFSGRGAEI-KDFLDGFEYE 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R+ I+ +G R+DGR +RPI E G LP +HGS+LF+RG+TQ L TLG ++ Q
Sbjct: 302 LVREHILKDGERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
R++SL G KRFMLHY+FPPF + E R+ RRE+GHG LAE+AL VLP +DFPY
Sbjct: 362 RIDSLYGESRKRFMLHYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDDFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ S+++ S+GS+SMA+VCGG++++MDAG+P+ VAG+++GL+ E D D
Sbjct: 422 TIRIVSDILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGD-------DIA 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DILG EDHLGDMDFK+AGT GVTAIQ+DIK G+ +I+ + LE A +GRL IL
Sbjct: 475 ILSDILGDEDHLGDMDFKVAGTSTGVTAIQMDIKITGVTREIMGKALEQAKEGRLHILGK 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M ++APRT +PR+ T+ D +R +IG G R I E TG I + D G +
Sbjct: 535 MAEALAAPRTDLSPYAPRITTIWVKTDKIRDVIGAGGKNVRGITEATGVSIDIEDTGKIN 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ +K ++ + + E E G +Y G V V ++GAFVE G GL+H+SEL
Sbjct: 595 IASTNKEACDKAIKMIRDLTA-EAEEGKLYMGTVRKVMDFGAFVEIFPGTDGLVHISELD 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V V+D++ G ++ ++CIG D +G IKLS K
Sbjct: 654 TERVKDVTDILKEGDKVLVKCIGIDKQGKIKLSRK 688
>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
gi|423720548|ref|ZP_17694730.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
gi|383365901|gb|EID43192.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidans TNO-09.020]
Length = 712
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 303/703 (43%), Positives = 453/703 (64%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K F I R + +E G++A+ ANGAV++ +T VLST T+SK DF PLT
Sbjct: 1 MEQEKRVFSIDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQ+++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D P++ A +S AL +SDIP+ GPI + +GR+ G+F++NPT+++ SD++LV A
Sbjct: 121 DQDCSPEMAALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H + + + Q +A + GK+K E L +
Sbjct: 181 GTKDAINMVEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDP 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAV 352
Q ++ LAEA I+ P K R A++++ V K E+E DEE+L+ + + +
Sbjct: 241 QLEAEIRQLAEADIKRAVQVPE--KLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K +R+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLG
Sbjct: 299 HKLVKEEVRRLITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L TKRFM HY+FPPF + E G G RRE+GHG L E+AL V+P
Sbjct: 359 ALGDVQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D
Sbjct: 419 EKEFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
Y ILTDI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ +I+ E L A KGR
Sbjct: 475 ---HYTILTDIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
++ILDHM + I PR + + +P++ T++ + D +R +IGP G KI +ETG +I +
Sbjct: 532 MEILDHMMQTIREPRKELSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N ++ EK + ++ I+ RE+EVG IY G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTIFISSVNEAMNEKAKQIIEDIV-REVEVGQIYLGKVKRIEKFGAFVELFNGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V RV DVVS+G ++ ++ + D +G + LS KAV
Sbjct: 651 HISELAEERVGRVEDVVSIGDEILVKVMEIDKQGRVNLSRKAV 693
>gi|404493180|ref|YP_006717286.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
DSM 2380]
gi|123574179|sp|Q3A4A1.1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77545244|gb|ABA88806.1| polyribonucleotide nucleotidyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 699
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 295/698 (42%), Positives = 452/698 (64%), Gaps = 19/698 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD---FLPLTVDY 116
K E + + +TLETGK+AR A+GAVV+ TKVL T S+K +R+ F PLTV+Y
Sbjct: 5 KVECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAK--QMREGQSFFPLTVNY 62
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK +A G IP ++ RRE ERE LV R+IDRP+RPLFP G+ E Q+M +V+S D +
Sbjct: 63 QEKFYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQ 122
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
DPD +A SAA+ +SDIP+ GP+ +R+GR+ G I NPT+++ + SD++++ + +R
Sbjct: 123 NDPDTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSGSR 182
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ + R ISE+++ L AH ++ Q+ L + AGK+K+E+ + I +
Sbjct: 183 DAIIMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKEKREFSVPEIDPAVV 242
Query: 297 EKVSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
EKV+ LAE + EAV +K +R A+ +I ++ + L + +++ + +A +
Sbjct: 243 EKVAELAETRLSEAV---KIRTKQDRYAAVAEIKTEILETLAADFEDQEDDI-SEAFGNL 298
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+KR++R+ + + VR+DGR + +RPI CE G LP HGS+LF+RG+TQ L LG
Sbjct: 299 QKRLVRQMVARDKVRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSK 358
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ QR++++ K+FMLHY+FPPFC+ E R+ RRE+GHG LAE+++ VLP +D
Sbjct: 359 DEQRMDNVQSMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDD 418
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV S+++ S+GS+SMA+VCG S+ALMDAG+P+ E VAG+++GL+ E D
Sbjct: 419 FPYTLRVVSDILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGD------- 471
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
D +L+DILG EDHLGDMDFK+ GTR G+TA+Q+DIK G+ +I+ + LE A +GRL I
Sbjct: 472 DIVVLSDILGDEDHLGDMDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHI 531
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
LD M I+APR+ +PR+ T++ D +R +IGP G R I E TG I + DG
Sbjct: 532 LDKMAEAITAPRSDLSPYAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGCAIDIEDDG 591
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + + ++ + + +E VG +Y V + E+GAFVE G +GL+H+S
Sbjct: 592 RINIASADGDACKAAIKMIRNLT-QEAVVGKLYMATVKKIMEFGAFVEIFPGTEGLVHIS 650
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
EL+ E V +V+D++ G Q+ ++C+ D +G IKLS K
Sbjct: 651 ELAKERVKKVTDILQEGDQVLVKCLDIDRQGKIKLSRK 688
>gi|392412361|ref|YP_006448968.1| polyribonucleotide nucleotidyltransferase [Desulfomonile tiedjei
DSM 6799]
gi|390625497|gb|AFM26704.1| polyribonucleotide nucleotidyltransferase [Desulfomonile tiedjei
DSM 6799]
Length = 695
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/705 (44%), Positives = 441/705 (62%), Gaps = 17/705 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQ 117
++ + + I ETG++A+ ++GAV+ ET VL T V KG DF PLTVDY
Sbjct: 3 YRTSCNVSGKEIVFETGRLAKQSSGAVLASTGETMVLVTAVAEKKGREGIDFFPLTVDYL 62
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
E +A G IP Y +REG P E+E+L R IDRPIRPLFP GF E Q++A+VLSSDG+
Sbjct: 63 EMTYAAGKIPGGYFKREGRPTEKEILTARFIDRPIRPLFPKGFTAETQIIATVLSSDGEN 122
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPD++ N SAAL LSDIP+ GPIG +R+GR+ G I+NPT E S SDL+L+ +R
Sbjct: 123 DPDMLGINGASAALHLSDIPFAGPIGAVRVGRVEGNVIINPTSLEDSYSDLSLIVVGSRL 182
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ + ++ E+ + + A+ E +K +E Q +L E AGK K+E + +E
Sbjct: 183 GIVMVEGGSDKLPEEVILEAIFKAYDEILKIVEAQEKLRELAGKPKREIVAPTEDSELIE 242
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
K+ I T K R +AL++I ++ ++E+ + L++L ++ +
Sbjct: 243 KIIATWGERIGQAVT--IREKLPRRDALNQIYDEILSSVED-AEHRRLEIL-GYLEKLEG 298
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
R IR II +GVRVDGR E+RPI E G LP HGS+LF+RG+TQ L VTLG ++
Sbjct: 299 RYIRNLIIEKGVRVDGRGFKEIRPITTEVGTLPRTHGSALFTRGETQALVIVTLGTSSDE 358
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q++E+L G K FMLHY FPPF + EV G +RREVGHG LA++A+ +LP + DFP
Sbjct: 359 QKVEALEGASYKSFMLHYKFPPFSVGEVKFLRGPSRREVGHGALADRAIQYLLPNDEDFP 418
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE++ S+GS+SMATVCG S++LMDAG+PL E VAG+++GL+ E D
Sbjct: 419 YTIRVVSEILESNGSSSMATVCGASLSLMDAGVPLLEPVAGIAMGLLQENDRII------ 472
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DI+G EDH GDMDFK+AGT GVTA+Q+DIK GI +I+ E L A +GRL IL
Sbjct: 473 -ILSDIIGDEDHHGDMDFKVAGTTTGVTALQMDIKIQGITREILTEALYQAKEGRLHILG 531
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLT 657
M + + PR + R++PR+ + + D +R +IGP G + R I+EETG +I V D
Sbjct: 532 EMAKTLDKPRAEISRHAPRIFIMFVNPDKIRDIIGPGGKIIRAIQEETGTKIEVDDTGKV 591
Query: 658 VVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
V+A S + L+ I I +E E+G IY G V V ++GAFVE G GL+H+S+
Sbjct: 592 VIASADS--DGALQAKLAIQKITQEAEMGKIYMGTVRKVTDFGAFVEIFPGTDGLVHISQ 649
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPE 759
L+ E V +V+DVV G ++ IG D G IKLS K A+ P+
Sbjct: 650 LAPERVRKVTDVVKEGDSFPVKVIGIDPNGKIKLSRKDAIGETPD 694
>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
49242]
gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
49242]
Length = 717
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 305/704 (43%), Positives = 449/704 (63%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFQVHREELDWAGRKLVLETGKVARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P ERE LV R+IDRPIRPLFP G+ + QV+ +VLS
Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL LS +P+ GP+G R+G I GQ +NPT++E+ LSDL+LV A
Sbjct: 121 DLENDPDILAMVAASAALTLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSDLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE+ + + H ++ IRLAE+A K ++ + ++
Sbjct: 181 GTSDAVLMVESEAKELSEETMLEAVMTGHRGFQPVIDAIIRLAERAAKDPRDLIVPDLA- 239
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKA 351
E V+ +AEA + + K ER A+D + V L E E + + + +
Sbjct: 240 HVAEAVARIAEADLREAYK--HTVKQERYAAVDAVKAKVMTELFPEGSEPAFTKEQVGEV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ L TL
Sbjct: 298 FKELQAKVVRWNILDTGIRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 418 AAAEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILE----- 472
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A G
Sbjct: 473 GE--RFAVLSDILGDEDHLGDMDFKVAGTSNGVTSLQMDIKIAGITEEIMKVALAQAKDG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + ++ R + +PR+ TLK D +R +IG G + R+I E+TG +I++
Sbjct: 531 RLHILGEMAKALTTSRAELGEFAPRIETLKIPTDKIRDVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V + + + ++ + + I + EVG IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKVASSDGNSIKAAINWIKS-IASDPEVGMIYEGTVVKTADFGAFVNFFGAKDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+LS + V++ +DVV G ++ ++ +G D RG ++LS++AV
Sbjct: 650 VHISQLSKQRVAKTTDVVKEGDRVKVKLLGFDDRGKVRLSMRAV 693
>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
spinosum DSM 4136]
Length = 707
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 304/688 (44%), Positives = 446/688 (64%), Gaps = 8/688 (1%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQFAQGVIPN 128
IT ETGK+A+ A+GAV + +T V+ T V+++K +DF PL+V+Y+EK A G P
Sbjct: 15 ITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEYKEKAAAAGKFPG 74
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
Y +REG P E+E+L R+ DRP+RPLFP G+Y++ Q++A +LS+DG+ D DI++ N S
Sbjct: 75 GYFKREGRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVALLLSADGENDADIISINGAS 134
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AAL +SDIP+ GP+G +R+GR+ GQF++NPT + + SDL+LVY + + +MI+ A E
Sbjct: 135 AALCVSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKSDLDLVYVGNKSEVIMIEGAANE 194
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIE 308
+ E + L A + Q L KAGK K+E L ++ ++ LE +A + IE
Sbjct: 195 LPEAEFIKALAFAQEHVQVLVAVQEELRAKAGKVKREVPLMLVKDELLEIAYEVAGSRIE 254
Query: 309 AVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEG 368
P SK ER +A+ + +V+ A++ E + +A D ++K+ R I+ +
Sbjct: 255 GAIYRP--SKVERSKAVGALRDEVEAAIKARYPESGNFEISQAFDYLQKKAFRVAILDKQ 312
Query: 369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV-GPP 427
R DGR +D++RP+ E+G +P HGS+LF+RG+TQ L TL EAQ +++ G
Sbjct: 313 TRADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLDEAQEMDNYAGGET 372
Query: 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVM 487
TKRF+LHY+FPPF + E G+ G NRRE+GHG LAE+++ V+P DFPY +RV+SEVM
Sbjct: 373 TKRFILHYNFPPFSVGETGRFGGQNRREIGHGALAERSVEPVVPSSEDFPYAMRVSSEVM 432
Query: 488 ASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLE 547
S+GSTSMA+VC G MAL+DAG+PL+ VAG+SVGLVSE D + ++ Y + DI+G E
Sbjct: 433 ESNGSTSMASVCSGVMALLDAGVPLKRPVAGISVGLVSEYD-ANNQMSRYLTMLDIIGSE 491
Query: 548 DHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPR 607
DH GDMDFK+ GT +GVT QLD+K GIPL I+ E + A GR IL+ M+ I+AP+
Sbjct: 492 DHFGDMDFKLCGTELGVTGFQLDLKLPGIPLSILNEAIAKAVTGRTNILEVMKSAIAAPK 551
Query: 608 TQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAKNRSVM 666
+ + +PR+ K + D + LIGP G + I+ E+G IS++ DGT+ + A ++ +
Sbjct: 552 SLSEF-APRIEKTKINPDKIGELIGPGGKNIKAIQAESGADISINDDGTVLIYASSKEAL 610
Query: 667 EKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSD 726
E+ LE V+ +G E+EVG Y G V S +GAF+ G + GL+H+SEL+ V+ V D
Sbjct: 611 ERALELVNNTVG-EVEVGKNYTGRVVSTTNFGAFMSLGGKKDGLIHISELADFRVNVVED 669
Query: 727 VVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
VV VG ++ +CIG D +G +KLS KAV
Sbjct: 670 VVKVGDVVTAKCIGVDDKGRVKLSRKAV 697
>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
gi|188020161|gb|EDU58201.1| polyribonucleotide nucleotidyltransferase [Providencia stuartii
ATCC 25827]
Length = 722
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 291/707 (41%), Positives = 456/707 (64%), Gaps = 12/707 (1%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSV 106
P + GT +L +F+ G +++ETG IAR A AV++ MD+T V T V K
Sbjct: 9 PKIKGTILLNPIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEG 68
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +E+Q+
Sbjct: 69 QDFFPLTVNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQI 128
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLS 226
+A+V+S + + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL LS
Sbjct: 129 IATVVSVNPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLS 188
Query: 227 DLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY 286
L+LV A T LM++ +A +SE+ + + H + ++ L ++AGK+K ++
Sbjct: 189 RLDLVVAGTESAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDW 248
Query: 287 KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ 346
+ +++ +KV+ LAE+ + + K ER E +D I ++V A+ E + +
Sbjct: 249 QPEPVNQALRDKVAALAESRMGDAYR--ITEKQERYEQVDLIKEEVTAAIVAEDENVDVA 306
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ + + K+V+R R+I R+DGR+ D VR + + LP HGS+LF+RG+TQ L
Sbjct: 307 EVADILANLEKQVVRSRVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQAL 366
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +
Sbjct: 367 VTATLGTERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 426
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+AV+P DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 427 MAVMPDHADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 486
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D D+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L
Sbjct: 487 GD-------DFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALN 539
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A RL IL ME+ I++PR +PR+ T++ + D ++ +IG G++ R + EETG
Sbjct: 540 QAKGARLHILGTMEQAINSPRDDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETG 599
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
I + DGT+ + A + ++ + +++ I E+EVG +Y+G VT + ++GAFV G
Sbjct: 600 TTIEIEDDGTVKIAATDGLKAKEAIRRIEEITA-EVEVGRVYQGKVTRIVDFGAFVAIGG 658
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
G++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 659 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMK 705
>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
gi|259534128|sp|C5D9D5.1|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
Length = 712
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 299/703 (42%), Positives = 453/703 (64%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K F I R + +E G++A+ ANGAV++ +T VL+T T+SK DF PLT
Sbjct: 1 MEQEKRIFSIDWAGRPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKNVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQ+++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D P++ A S AL +SDIP+ GPI + +GR+ G+F++NPT+++ SD++LV A
Sbjct: 121 DQDCSPEMAALFGASLALTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDIHLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q +A + GK+K E L +
Sbjct: 181 GTKDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYELDP 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAV 352
Q ++ LAE I+ P K R A++++ V K E+E DEE+L+ + + +
Sbjct: 241 QLEAEIRQLAEEDIKRAVQVPE--KLARDAAIEEVKASVIAKYEEQEADEETLKQVNEIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K +R+ I E +R DGR++DE+RP+ E G LP HGS LF+RG TQVL TLG
Sbjct: 299 HKLVKEEVRRLITEEKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L TKRFM HY+FPPF + E G G RRE+GHG L E+AL V+P
Sbjct: 359 ALGDVQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D
Sbjct: 419 EKEFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+Y ILTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR
Sbjct: 475 ---NYTILTDIQGIEDHLGDMDFKVAGTAKGVTALQMDIKIKGLSREILEEALQQAKKGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
++IL+HM + I PR + + +P++ T++ + + +R +IGP G KI +ETG +I +
Sbjct: 532 MEILEHMMQTIREPRKELSKYAPKILTMQINPEKIREVIGPSGKQINKIIDETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N ++ +K + ++ I+ RE+EVG IY G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTIFISSVNEAMNQKAKQIIEDIV-REVEVGQIYLGKVKRIEKFGAFVELFNGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V RV DVVS+G ++ ++ + D +G + LS KAV
Sbjct: 651 HISELAEERVGRVEDVVSIGDEILVKVMEIDKQGRVNLSRKAV 693
>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
degradans 2-40]
gi|122996024|sp|Q21H65.1|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
2-40]
Length = 722
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 310/723 (42%), Positives = 449/723 (62%), Gaps = 26/723 (3%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSV 106
PS KV K+ F+ G+ +TLETG+IAR A+GAV+ M +T VL VT SK
Sbjct: 6 PSQKDKKVNPVIKK-FQYGNDTVTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPG 64
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+DF PL+V YQEK +A G IP + +RE P E+E L R+IDRPIRPLFP GF +EVQV
Sbjct: 65 QDFFPLSVHYQEKAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFLNEVQV 124
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRIC-GQFIVNPTMDELSL 225
+ +V+S++ DPDI+A TSAAL +S IP+ GPIG R+G +++NPT L
Sbjct: 125 VCTVISAEKDVDPDIVAMIGTSAALAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKT 184
Query: 226 SDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE 285
S+L++V A T + LM++ +A+E+ E + + AH E ++ LA+ A K +
Sbjct: 185 SELDMVVAGTADAVLMVESEAKELPEDIMLGAVLYAHQEMQAVVQAVAELAKDAAKPVWD 244
Query: 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDP---SYSKFERGEALDKIGQDVKKALEEECDE 342
+K E+V+ +A +E F D +Y ++ + D++ + +A+ E E
Sbjct: 245 WKP--------EEVNAELKAKVEHGFADSVGVAYRITDKQKRYDRLSELRNQAVAELATE 296
Query: 343 ES---LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFS 399
ES + + K+++R R++A R+DGR VRP++ E G LP +HGS+LF+
Sbjct: 297 ESGVSADEVKGLFAKIEKQIVRSRVVAGEPRIDGRDSKTVRPLHVEVGVLPKVHGSALFT 356
Query: 400 RGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHG 459
RG+TQ L TLG+ +AQ +++L G FMLHY+FPP+ + E G+ RRE+GHG
Sbjct: 357 RGETQALVVSTLGSARDAQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHG 416
Query: 460 TLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGV 519
LA + + AVLP E DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+
Sbjct: 417 RLARRGIGAVLPKEEDFPYTMRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGI 476
Query: 520 SVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLD 579
++GLV E + + +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +
Sbjct: 477 AMGLVKEDN-------GFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIEGITEE 529
Query: 580 IICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKR 639
I+ L A RL IL M R I++PR + N+P+ T+K D D +R +IG GA R
Sbjct: 530 IMEIALGQAMDARLHILAEMNRVIASPRKELSENAPQFHTMKIDPDKIRDIIGKGGATIR 589
Query: 640 KIEEETGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYG 698
I EETG I + D GT+ + A + M+ + +++ I E E+G +Y+G V + ++G
Sbjct: 590 SITEETGASIDIDDNGTIKIYADDGDGMQAAIARIEEITA-EAEIGAVYQGKVVRIVDFG 648
Query: 699 AFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
AFV F G+ GL+H+S+++HE V VSD + GQ + ++C+ D RG IKLS+K + P P
Sbjct: 649 AFVNFLPGKDGLVHISQIAHERVQNVSDYLKEGQDIEVKCMDIDQRGRIKLSIKELLPAP 708
Query: 759 EAD 761
EA+
Sbjct: 709 EAE 711
>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
Length = 740
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/725 (42%), Positives = 455/725 (62%), Gaps = 17/725 (2%)
Query: 42 APPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS 101
A +PAP + +L +F+ G +TLETG +AR A AV++ MD+T V TV
Sbjct: 17 ATDSPAPKLRTLILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQ 76
Query: 102 KGDSV-RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGF 160
K +DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF
Sbjct: 77 KKSKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGF 136
Query: 161 YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTM 220
+EVQV+A+V+S + + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT
Sbjct: 137 VNEVQVIATVVSVNPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTA 196
Query: 221 DELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAG 280
DEL S L+LV A T+ LM++ +A +SE+ + + H + +E L +AG
Sbjct: 197 DELKQSRLDLVVAGTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAG 256
Query: 281 KQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEE 338
K + +++ + + +V+ LAEA I + TD K ER + I + AL
Sbjct: 257 KPRWDWQPEAANTPLISRVAALAEARISDAYRITD----KQERYAQVGVIKDETIAALLA 312
Query: 339 ECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLF 398
E + + V ++ K V+R RI+ R+DGR+ D +R + +G LP HGSSLF
Sbjct: 313 EDETLDGSEIGDIVHSLEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLF 372
Query: 399 SRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGH 458
+RG+TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GH
Sbjct: 373 TRGETQALVTATLGTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGH 432
Query: 459 GTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAG 518
G LA++ +LAV+P DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG
Sbjct: 433 GRLAKRGVLAVMPKAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAG 492
Query: 519 VSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPL 578
+++GLV E + + +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI
Sbjct: 493 IAMGLVKEDE-------KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITR 545
Query: 579 DIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALK 638
+I+ E L A RL IL ME+ IS PRT+ +PR+ T+K +D ++ +IG G++
Sbjct: 546 EIMQEALNQAKGARLHILGVMEQAISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVI 605
Query: 639 RKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEY 697
R + EETG I + DGT+ + A + ++ + +++ I EIEVG IY G VT + ++
Sbjct: 606 RALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDF 664
Query: 698 GAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
GAFV GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A
Sbjct: 665 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATES 724
Query: 757 RPEAD 761
+P+ +
Sbjct: 725 KPQTE 729
>gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II '5-way CG']
Length = 713
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/696 (42%), Positives = 444/696 (63%), Gaps = 18/696 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQ 123
+G + + LETG++A+ A+G+VV+ D T V++T +SK DFLPLTVDYQE+ +A
Sbjct: 10 VGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAA 69
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP + +REG P ERE+L R+IDRP+RPLFP GF+ + Q++ASV+S D D+MA
Sbjct: 70 GKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVMA 129
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
A+SAAL +SDIP+ P+ +++G + G FIVNPT+DE S L+LV A TR+ +M++
Sbjct: 130 VVASSAALYVSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAIMMVE 189
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
Q EISE+ + + LAH + +E Q +L AGK+K+ I + +E V ++
Sbjct: 190 GQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAMPIPPKVMEMVESMG 249
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK------AVDTVRK 357
+ + K ER + +I DV++ + +E S + + + A + +
Sbjct: 250 ASRLREALK--IAVKQERQDQTAQILGDVREKILQEFSATSPETVVEEREIFNAFHELER 307
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
R++R+ I+ VR DGR L ++RPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 308 RIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDE 367
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR+++L G TKRFMLHY+FPPF + E G RRE+GHG LAE+AL VLP + FP
Sbjct: 368 QRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDSFP 427
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
Y++R+ S+++ S+GS+SMATVCGGS+A+MDAGIP++ VAG+++GL+ E D
Sbjct: 428 YSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGD-------RI 480
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DILGLEDHLGDMDFK+ GT G+TA+Q+DIK GI ++++ E L+ A +GRL I++
Sbjct: 481 AILSDILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIME 540
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M+ + + R +PR+ TLK D +R +IGP G + R I E+TG +I + D G +
Sbjct: 541 KMKMALPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLI 600
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + +K ++ ++ I+ E++VG IY G V +V +YGAFVE G GL H+S+L
Sbjct: 601 QIASTDEVAAQKAIDMINQIV-EEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQL 659
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSDVVS G + ++ + D +G I+LS K
Sbjct: 660 EDRRVEKVSDVVSEGDLILVKALEVDRQGKIRLSRK 695
>gi|410478615|ref|YP_006766252.1| polyribonucleotide nucleotidyltransferase [Leptospirillum
ferriphilum ML-04]
gi|406773867|gb|AFS53292.1| putative polyribonucleotide nucleotidyltransferase [Leptospirillum
ferriphilum ML-04]
Length = 713
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/696 (42%), Positives = 444/696 (63%), Gaps = 18/696 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQ 123
+G + + LETG++A+ A+G+VV+ D T V++T +SK DFLPLTVDYQE+ +A
Sbjct: 10 VGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAA 69
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP + +REG P ERE+L R+IDRP+RPLFP GF+ + Q++ASV+S D D+MA
Sbjct: 70 GKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVMA 129
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
A+SAAL +SDIP+ P+ +++G + G FIVNPT+DE S L+LV A TR+ +M++
Sbjct: 130 VVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAIMMVE 189
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
Q EISE+ + + LAH + +E Q +L AGK+K+ I + ++ V ++
Sbjct: 190 GQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPPKVMDMVESMG 249
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK------AVDTVRK 357
+ K ER E +I DV++ + +E S +++ + A + +
Sbjct: 250 APRLREALK--IAVKQERQEQTAQILGDVREKILQEFSASSPEMVVEEREIFNAFHELER 307
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
R++R+ I+ VR DGR L ++RPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 308 RIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDE 367
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR+++L G TKRFMLHY+FPPF + E G RRE+GHG LAE+AL VLP + FP
Sbjct: 368 QRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDSFP 427
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
Y++R+ S+++ S+GS+SMATVCGGS+A+MDAGIP++ VAG+++GL+ E D
Sbjct: 428 YSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGD-------RI 480
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DILGLEDHLGDMDFK+ GT G+TA+Q+DIK GI ++++ E L+ A +GRL I++
Sbjct: 481 AILSDILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIME 540
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M+ + + R +PR+ TLK D +R +IGP G + R I E+TG +I + D G +
Sbjct: 541 KMKMALPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLI 600
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + +K ++ ++ I+ E++VG IY G V +V +YGAFVE G GL H+S+L
Sbjct: 601 QIASTDEVAAQKAIDMINQIV-EEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQL 659
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSDVVS G + ++ + D +G I+LS K
Sbjct: 660 EDRRVEKVSDVVSEGDLILVKALEVDRQGKIRLSRK 695
>gi|338972684|ref|ZP_08628055.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobiaceae
bacterium SG-6C]
gi|414169625|ref|ZP_11425358.1| polyribonucleotide nucleotidyltransferase [Afipia clevelandensis
ATCC 49720]
gi|338233845|gb|EGP08964.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobiaceae
bacterium SG-6C]
gi|410885357|gb|EKS33172.1| polyribonucleotide nucleotidyltransferase [Afipia clevelandensis
ATCC 49720]
Length = 714
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/701 (43%), Positives = 447/701 (63%), Gaps = 23/701 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAV+ ET VL+TV ++K D V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVMATYGETIVLATVVAAKSPRDGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A+SAAL +S +P+ GPIG R+G + +F++NPT+DE++ ++L+LV A T
Sbjct: 127 DILALVASSAALTISGVPFMGPIGAARVGFVNDEFVLNPTLDEMNDTNLDLVVAGTATAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+ E + + H ++ I LAEKA K+ +E ++ ++E +++
Sbjct: 187 LMVESEAKELPEDVMLGAVMFGHKHFQPVIKAIIELAEKAAKEPREL-VATVNEALEKEI 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-----KKALEEECDEESLQVLPKAVDT 354
+ E + ++ P K ER A+ + Q + K +EE E L+VL
Sbjct: 246 LGIVEQDLRKAYSIPV--KQERYAAVGAVKQKLLEHFFKDGVEERY--EKLRVL-DVFKE 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 301 VEAKIVRWNILDTGKRIDGRDLSTVRPIIAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q ++SL G +RF+LHY+FPPF + E G+ G RRE+GHG LA +A+ VLP +
Sbjct: 361 EDEQYIDSLSGTYKERFLLHYNFPPFSVGETGRLGGTKRREIGHGKLAWRAIHPVLPAHH 420
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E D
Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGD------ 474
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A GR+
Sbjct: 475 -RFAVLSDILGDEDHLGDMDFKVAGTETGITSLQMDIKIAGITEAIMKQALAQAKDGRIH 533
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SD 653
IL M + ++ R + ++PR+ L+ D +R +IG G + R+I E+TG ++++ D
Sbjct: 534 ILGEMAKALTNARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKVNIEDD 593
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ V + N + ++ + I + EVG IY G V V E+GAFV F G + GL+H+
Sbjct: 594 GTVKVASANGESIRAAIKWIKSITS-DPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHI 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
S+L+ V + SDVV G ++ ++ +G D RG ++LS+KAV
Sbjct: 653 SQLAANRVQKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAV 693
>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
Length = 760
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/692 (43%), Positives = 439/692 (63%), Gaps = 12/692 (1%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLTVDYQEKQFAQ 123
+G + + ETGK+A A GAV + + ++ V + T S + DF PL+V+Y+E+ +A
Sbjct: 12 VGGQPVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVEYEERLYAG 71
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP +Y RREG P +L R+ DRP+RPLF +EVQV+ LS+D + DI+
Sbjct: 72 GRIPGSYFRREGKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQENPLDILC 131
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
NA SAALM+SDIPWGGP+G +RIGRI GQFI+NPT ++ +SDL+L A TR+ LM++
Sbjct: 132 INAASAALMISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDLDLRIAGTRDAILMVE 191
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
A+E++E + L+ H ++ Q+++A + GK K+E L + +++V A
Sbjct: 192 CGAKEVAEDVMVQALQFGHEALQPLIDAQLQMAAEVGKPKREVPLFPLDPTLVDQVYEKA 251
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKR 363
+EA P + K + EA+D + + + + + DE ++ L A V K+V+R+R
Sbjct: 252 AGALEAALDAP-HDKAQLNEAVDALQKQIVEEMAA-GDETLVEPLKNAFTEVYKKVVRRR 309
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ +G+R D R E+RPI+CE G P HGS LF+RG+TQVL TLG P EAQ L+SL
Sbjct: 310 ILEKGIRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPREAQELDSL 369
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
V TKR+M HY+FPP+ EV G +RRE+GHG LAE+AL V+PPE++FPYT+R+
Sbjct: 370 VPIETKRYMHHYNFPPYSTGEVKPLRGQSRREIGHGALAERALEPVIPPEDEFPYTLRLV 429
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
SEV++S+GSTSMA+VCG ++ALMD G+P++ VAGV++GL+ E D + ILTDI
Sbjct: 430 SEVLSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLIKEGDNAV-------ILTDI 482
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
GLEDHLGDMDFK+AGT G+TA+Q+DIK GI +++ L A + RL IL M I
Sbjct: 483 QGLEDHLGDMDFKVAGTEKGITALQMDIKIKGITPELMSRALAQAREARLDILKKMLAVI 542
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKN 662
APR + + PR+ LK D + +IGP G L R ++EET RI + DGT+ + + +
Sbjct: 543 PAPRPELKPHVPRITILKVPVDKIGAIIGPGGKLIRALQEETNTRIDIEDDGTVYIASTD 602
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++ E+++ + +VG IY G V V ++GAFVE G++H+S+L E V+
Sbjct: 603 KAGEMAARERIEAVT-ETPQVGRIYTGKVVRVTDFGAFVEILPNVDGMVHISQLDSERVN 661
Query: 723 RVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
RV DVV+VG ++++ D G I+LS +AV
Sbjct: 662 RVEDVVNVGDEVTVMVTNIDPDGKIRLSRQAV 693
>gi|424867047|ref|ZP_18290860.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II 'C75']
gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum]
gi|387222387|gb|EIJ76836.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II 'C75']
Length = 713
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/696 (42%), Positives = 444/696 (63%), Gaps = 18/696 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQ 123
+G + + LETG++A+ A+G+VV+ D T V++T +SK DFLPLTVDYQE+ +A
Sbjct: 10 VGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAA 69
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP + +REG P ERE+L R+IDRP+RPLFP GF+ + Q++ASV+S D D+MA
Sbjct: 70 GKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVMA 129
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
A+SAAL +SDIP+ P+ +++G + G FIVNPT+DE S L+LV A TR+ +M++
Sbjct: 130 VVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAIMMVE 189
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
Q EISE+ + + LAH + +E Q +L AGK+K+ I + ++ V ++
Sbjct: 190 GQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPPKVMDMVESMG 249
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK------AVDTVRK 357
+ K ER E +I DV++ + +E S +++ + A + +
Sbjct: 250 APRLREALK--IAVKQERQEQTAQILGDVREKILQEFSASSPEMIVEEREIFNAFHELER 307
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
R++R+ I+ VR DGR L ++RPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 308 RIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDE 367
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR+++L G TKRFMLHY+FPPF + E G RRE+GHG LAE+AL VLP + FP
Sbjct: 368 QRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDSFP 427
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
Y++R+ S+++ S+GS+SMATVCGGS+A+MDAGIP++ VAG+++GL+ E D
Sbjct: 428 YSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGD-------RI 480
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DILGLEDHLGDMDFK+ GT G+TA+Q+DIK GI ++++ E L+ A +GRL I++
Sbjct: 481 AILSDILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMRESLQKAREGRLYIME 540
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M+ + + R +PR+ TLK D +R +IGP G + R I E+TG +I + D G +
Sbjct: 541 KMKMALPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLI 600
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + +K ++ ++ I+ E++VG IY G V +V +YGAFVE G GL H+S+L
Sbjct: 601 QIASTDEVAAQKAIDMINQIV-EEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQL 659
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSDVVS G + ++ + D +G I+LS K
Sbjct: 660 EDRRVEKVSDVVSEGDLILVKALEVDRQGKIRLSRK 695
>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
Length = 711
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 297/694 (42%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E LS L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I +V L E + S + + + ++
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKAEVIATLTAEDETVSEGKIIDIITALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR++ +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + ++V+E+++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKRVMERIEEIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITD 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RV+D +SVGQ++ ++ + D +G I+L++K
Sbjct: 656 ARVERVTDYLSVGQEVQVKVVEIDRQGRIRLTMK 689
>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
Length = 702
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 292/700 (41%), Positives = 447/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G ITLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQE+ +
Sbjct: 8 FEYGQHTITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVNYQERTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PD+
Sbjct: 68 AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GP+G+ R+G I G++I+NP + +L+ SDL+L+ A T LM
Sbjct: 128 ISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAGTEGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++E+ + + H + + L +AGK ++ + E + K+
Sbjct: 188 VESEAASLAEEVMLGSVAYGHEQQQVVITAIKELKAEAGKPAWDWTAPVSDEDLVAKIKA 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE A + K ER +A++ + D + L E + L+ + K + +V K+V+R
Sbjct: 248 LAEEKFSAAYQ--IADKSERRDAVNALKSDAIEKLVAENADVDLREVGKILSSVEKQVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RI+A R+DGR+ D VR + +G LP HGS++F+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRILAGKPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVD 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+C+ E G RRE+GHG LA + + AV+P +FPY++R
Sbjct: 366 SIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEEFPYSIR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMATVCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I R ++PR+ +K + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 539 AIGTHRDDISAHAPRITIIKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 599 SNSEATKEAIRRIEEITA-EVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + GQ++ ++ + D +G ++LS+K P+ E+
Sbjct: 658 VANVSDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKAES 697
>gi|398798033|ref|ZP_10557335.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. GM01]
gi|398101281|gb|EJL91504.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. GM01]
Length = 712
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/713 (41%), Positives = 452/713 (63%), Gaps = 17/713 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DE++ S LNLV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADEINESRLNLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A ++E+ + + H + +E L +AGK + +++ ++
Sbjct: 181 GTQNAVLMVESEADILTEEQMLGAVVFGHEQQQIVIENINALVAEAGKPRWDWQPLPTND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + + AL+ E + +
Sbjct: 241 ALIARVTALAEAGISDAYRITD----KQERYTQVGAVKDATIAALQAEDETLDAGDIADI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V + K V+R RII R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 VHDLEKSVVRSRIIRGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNLDELMGERTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 KQADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEAD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILSVMEQAISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDSLKAKEAIRRIEEITA-EIEVGRVYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEADV 762
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P +V
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATEQKPAEEV 701
>gi|398792260|ref|ZP_10552922.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. YR343]
gi|398213574|gb|EJN00167.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. YR343]
Length = 712
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/713 (42%), Positives = 452/713 (63%), Gaps = 17/713 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DE++ S LNLV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADEINESRLNLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A ++E+ + + H + +E L +AGK + +++ ++
Sbjct: 181 GTQNAVLMVESEADILTEEQMLGAVVYGHDQQQIVIENINALVAEAGKPRWDWQPLPTND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + + AL+ E + +
Sbjct: 241 ALIARVTALAEAGISDAYRITD----KQERYTQVGAVKDATIAALQAEDETLDAGDIADI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V + K V+R RII R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 VHDLEKSVVRSRIIRGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNLDELMGERTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 KQADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEAD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILSVMEQAISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDSLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEADV 762
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P +V
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATEQKPAEEV 701
>gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
DSS12]
gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
DSS12]
Length = 705
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 293/700 (41%), Positives = 448/700 (64%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQE+ +
Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVNYQERTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PD+
Sbjct: 71 AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GP+G+ R+G I G++I+NP + +L SDL+L+ A T+ LM
Sbjct: 131 ISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLDLIVAGTQAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + + H + ++ L +AGK ++ + +EK+
Sbjct: 191 VESEAASLPEEIMLGSVAYGHEQLQVVIDAVTELKAEAGKPAWDWSAPVADADLVEKIRV 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA A + +K ER +A++ + L EE + L + K + ++ K+V+R
Sbjct: 251 LAEADFAAAYQ--ITTKHERRDAVNALKSVAIAKLVEENADIDLSEVGKLLASLEKKVVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR+ D VR + +G LP HGS++F+RG+TQ L T TLG +AQ+++
Sbjct: 309 GRIIAGQPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVD 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+C+ E G RRE+GHG LA + + AV+P DFPY++R
Sbjct: 369 SIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSAEDFPYSIR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 429 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 482 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQ 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I R ++PR+ T+K + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 542 AIGTHRDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 602 SNGEATKEAIRRIEEITA-EVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + GQ++ ++ + D +G ++LS+K P+ E+
Sbjct: 661 VANVSDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKTES 700
>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
Length = 708
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 292/705 (41%), Positives = 453/705 (64%), Gaps = 13/705 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERS 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF++E+Q++A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL +S IP+ GPIG R+G I Q+++NPT+DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLDLVVAGTSSAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+ + + H + +E LA + K+K +++ I+E+ +++
Sbjct: 188 MVESEADLLTEEQMLGAVVFGHEQQQIVIENINALAAETNKEKWDWQPEAINEELHSRIA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE + + K ER +D I +DV L E + + + + + K+V+
Sbjct: 248 ELAEQRLGDAYR--ITEKQERYTNVDAIKEDVTNTLLAENESLDVAEINDILSGLEKKVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RTRVLKGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P +++FPYTV
Sbjct: 366 DELMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNQSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D DY +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEND-------DYVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILTIME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
I+ PR + +PR+ T+ + D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 EAINRPREEISEFAPRIHTIHINPDKIKDVIGKGGSVIRALTEETGTTIEIDDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + S E + +++ I E+EVG +Y+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDSSKAEAAIRRIEDITA-EVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAEK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEADVK 763
V +V+D + +GQ++ ++ + D +G I+LS+K AVS A+ +
Sbjct: 658 RVEKVTDYLQLGQEVPVKVLEIDRQGRIRLSIKEAVSAEKPAETE 702
>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase [Pectobacterium atrosepticum SCRI1043]
gi|81646171|sp|Q6D9A1.1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
atrosepticum SCRI1043]
Length = 706
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/707 (41%), Positives = 447/707 (63%), Gaps = 12/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG+ R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE + + H + +E L +AGK K E+ ++
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER ++ I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVNVIKTDVVAALQAEDETLNAGEIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NIEKNVVRGRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVRIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K +P+ +
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANPQTQ 697
>gi|420375620|ref|ZP_14875470.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
gi|391311691|gb|EIQ69323.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
Length = 711
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 297/702 (42%), Positives = 445/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ LA++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 ELDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|197106893|ref|YP_002132270.1| polynucleotide phosphorylase [Phenylobacterium zucineum HLK1]
gi|226702673|sp|B4RC48.1|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
zucineum HLK1]
Length = 715
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/703 (42%), Positives = 453/703 (64%), Gaps = 22/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + +TLETG++AR A+GAV+ ET VL+T +K +DF PLTV+YQE
Sbjct: 6 RKTIEWGGKTLTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP ++ RREGAP ++E L R+IDRPIRPLF GF +EVQV+ +VL+ D + D
Sbjct: 66 KFYAAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL+LS +P+ GPI R+G + G++++NPT+DE+ S ++LV A T E
Sbjct: 126 PDIVAMVAASAALVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMDLVVAGTAEA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E++E+ + G+ AH ++ I LAE + K+ +++ +++ K
Sbjct: 186 VMMVESEIKELTEEQVLGGVTFAHKGMQPVIDAIIELAEHSAKEPFDFQPDD-TDEIAAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQV--LPKAV 352
V +L + A + K ER A IG +KA+ + E + E L
Sbjct: 245 VKDLIGGDLRAAYQ--ITGKSERHAA---IGAAKEKAMTAFAKSEANPEGYDANKLGGVF 299
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R+ I+ G R+DGR +D+VRPI E G LP HGS+LF+RG+TQ LC TLG
Sbjct: 300 KEIEADIVRRSILETGKRIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G ++FMLHY+FPPF + E G+ RREVGHG LA +AL +LP
Sbjct: 360 TGDDEQLIDALEGKYFEKFMLHYNFPPFSVGETGRMGSPGRREVGHGKLAWRALRPMLPS 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+FPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL++ V+G+++GL+ E D
Sbjct: 420 YEEFPYTIRIVSEIFESNGSSSMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKD---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR
Sbjct: 476 ---GFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + ++APR + +P++ T+K D +R +IG G + R+I E+TG +I +
Sbjct: 533 DHILAEMNKAMTAPRAELGEFAPKIETIKIPVDKIREVIGSGGKVIREIVEKTGAKIDIG 592
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A ++ ++ E + I E EVG IY G V + ++GAFV F G + GL+
Sbjct: 593 EDGTIKIAAAEQTKIDAAKEWIKS-IASEPEVGQIYTGKVVKIVDFGAFVNFFGAKDGLV 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++S+E V++VSDV++ GQQ+ ++ +G D RG +LS+K V
Sbjct: 652 HVSQISNERVAKVSDVLTEGQQVKVKLLGFDDRGKTRLSMKVV 694
>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
caulinodans ORS 571]
gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
ORS 571]
Length = 756
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/711 (42%), Positives = 453/711 (63%), Gaps = 23/711 (3%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLP 111
T + + +EE + G R + LETGK+AR A+GAV +T VL+TV S++ +DF P
Sbjct: 31 TFMFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFP 90
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 91 LTVNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVL 150
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
+ D + DPD+++ A SAAL LS +P+ GPIG R+G + ++++NPT++EL S L+LV
Sbjct: 151 AHDLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLV 210
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T + LM++ +A+E+SE+ + + H +E IRLAEKA K+ + ++ +
Sbjct: 211 VAGTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFE--PV 268
Query: 292 SEQTLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
LE K+ +AEA + A + K R EA+ VKK E+ + Q PK
Sbjct: 269 DHSALEAKIREIAEADLRAAYK--IKQKQARYEAVGAAKSKVKKYFEQLAIDG--QEAPK 324
Query: 351 AVDT------VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
A D + +++R I+ +G+R+DGR + VRPI E G LP HGS+LF+RG+TQ
Sbjct: 325 AQDVAEVLKGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQ 384
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 385 ALVVATLGTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWR 444
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP +++FPYT+RV SE++ S+GS+SMATVCG S++LMDAG+PL+ VAG+++GL+
Sbjct: 445 AIHPMLPAKHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLI 504
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E GE + +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK AGI +I+
Sbjct: 505 LE-----GE--KFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVA 557
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L A GR IL M + +++ R + ++PR+ +K D +R +IG G + R+I E+
Sbjct: 558 LAQAKDGRAHILGEMSKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEK 617
Query: 645 TGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
TG +I++ DGT+ + + + ++ + + I E EVG IY G V V ++GAFV F
Sbjct: 618 TGAKINIEDDGTIKIASASGDSIKAAINWIKS-IASEPEVGAIYDGTVVKVVDFGAFVNF 676
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+LS E V++ SDVV G ++ ++ +G D RG +LS+KAV
Sbjct: 677 FGSKDGLVHISQLSKERVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAV 727
>gi|217976462|ref|YP_002360609.1| polyribonucleotide nucleotidyltransferase [Methylocella silvestris
BL2]
gi|254782729|sp|B8EP09.1|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
BL2]
Length = 714
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 311/705 (44%), Positives = 454/705 (64%), Gaps = 17/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ E +EE + R +TLETG+IAR A+GAV+ ET VL+TV S++ DF PLT
Sbjct: 1 MFEIHREELDWAGRKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A ATSAAL +S IP+ GP+G R+G I G +NPT+DEL S L+LV A
Sbjct: 121 DLENDPDILALVATSAALTISGIPFMGPVGGARVGYINGALKLNPTVDELKESALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE + + H ++ IRLAEKA K+ +E L++ +
Sbjct: 181 GTGDAVLMVESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKAAKEPRE--LAVADK 238
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE--SLQVLPK 350
+E V ++AE + + +K ER +A+D + V AL E E S + + +
Sbjct: 239 AEVEAAVRDIAEGELREAYK--ITAKQERYKAVDAVKAKVALALFPEDAEPRFSKEKVAE 296
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A ++ +V+R I+ GVR+DGR L VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 297 AFHDLQAKVVRWNILDLGVRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVAT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 357 LGTGEDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPML 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +FPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 417 PTAAEFPYTIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILE---- 472
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A
Sbjct: 473 -GE--RFAVLSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKVAGITEEIMKVALDQAKG 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + ++ R + +PR+ TLK D +R +IG G + R+I E+TG +I+
Sbjct: 530 GRLHILGEMSKALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKIN 589
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + + + ++ + + I + EVG IY+G V V ++GAFV F G + G
Sbjct: 590 IEDDGTVKVASSDGNSIKAAIAWIKS-IANDPEVGQIYEGTVVKVVDFGAFVNFFGSKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ V++ SDVV G+++ ++ +G D RG ++LS++ V
Sbjct: 649 LVHISQLAKGRVAKSSDVVKEGEKVKVKLLGFDDRGKVRLSMRYV 693
>gi|347527557|ref|YP_004834304.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. SYK-6]
gi|345136238|dbj|BAK65847.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. SYK-6]
Length = 780
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/698 (42%), Positives = 445/698 (63%), Gaps = 17/698 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD---FLPLTVDYQE 118
E E G + + LETG++AR A+GAV+ ET VL VT++K SV+D F PLTV YQE
Sbjct: 8 EIEWGGKTLKLETGRVARQADGAVLATYGETVVLCAVTAAK--SVKDGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K A G IP + +RE E+E LV R+IDRP+RPLFP GFY+E+ V+A VLS DG+ +
Sbjct: 66 KFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGETE 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL +S +P+ GPIG +R+G G++ +NP++DE+ +L+LV A T
Sbjct: 126 PDILAMIAASAALTISGVPFMGPIGAVRVGYKDGEYQLNPSLDEVKSGELDLVVAATDAA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E+SE+ + + AH E+ K + I+LAEKA K+ E L + + K
Sbjct: 186 VMMVESEAKELSEEVMLGAVMFAHEESRKVIGAIIQLAEKAAKEPWELNLGDGNAELKAK 245
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVDTVRK 357
+ +L A I A + +K ER AL+ K+ + D +S+ K V +
Sbjct: 246 LKDLIGADIAAAYK--LTNKSERSNALNSARDKAKEYFAAQGLDAQSVMAGIKLVKKIEA 303
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R I+ EG R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 304 DIVRTAILKEGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAE 363
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + DFP
Sbjct: 364 QMIDGLTGLSYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDFP 423
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E GE D+
Sbjct: 424 YTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILE-----GE--DF 476
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A GR IL
Sbjct: 477 TVLSDILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITKEIFEAALHQAKDGRAHILG 536
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M + + + R++ ++PR+ T++ D +R +IG G + R+I ETG ++ + D G +
Sbjct: 537 EMNKALDSTRSELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVI 596
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + + +E + I+ E EVG IY G V ++ ++GAFV F GG+ GL+HVSE+
Sbjct: 597 KISSSDIAQIEAAKAWILGIV-EEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEI 655
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+E V +V+DV+ GQ++ ++ + D RG ++LS++ V
Sbjct: 656 RNERVEKVADVLKEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
akajimensis DSM 45221]
gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
akajimensis DSM 45221]
Length = 724
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 291/695 (41%), Positives = 443/695 (63%), Gaps = 20/695 (2%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGVIPN 128
I + TG +A A+GAV + ET++ + T++ +DF PLTVDY+EK A G P
Sbjct: 14 IEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVDYREKFSAGGKFPG 73
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
Y +REG P E+E+L R+ DRP+RPLFP GF +EVQV+ +L++D +PD++ NA S
Sbjct: 74 GYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQTHEPDVLMVNAAS 133
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AA ++SDIPW GP+G +R+G+I G+F+ NPT DE+ SDL+L+Y + + +MI+ A
Sbjct: 134 AATLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYVGSETEMMMIEGSAEF 193
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAH-- 306
IS++ L + Q LA+ AGK+KKE+ L + T V+ EAH
Sbjct: 194 ISDERFYEALEYGQQAIQPIIAAQKELAKLAGKEKKEFPLVL----TPADVTEFCEAHAA 249
Query: 307 --IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKAVDTVRKRVIRK 362
++ SY+ ER A++ I +D ALEE+ +++ + +A D +++++ R+
Sbjct: 250 EKVKEALGHDSYT--ERKLAIEAIAKDTTAALEEKLGADNVDGNDVARAFDEIQEKLYRQ 307
Query: 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLES 422
I+ G RVDGR ++R I C++G LP +HGS++F+RG+TQ L TLG + Q ++
Sbjct: 308 NILETGRRVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGTSRDVQDIDG 367
Query: 423 LVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L G T K F+LHY+FPPF E G+ RRE+GHG LAE++LL +LPPE++FPY +R
Sbjct: 368 LTGGATSKSFILHYNFPPFSTGEAGRFGFTGRREIGHGALAERSLLPILPPEDEFPYAIR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SEVM+S+GSTSMA++CGG ++LMDAG+P+ AG+S GLV+E D + G+I + ILT
Sbjct: 428 VVSEVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKD-ADGKITKHVILT 486
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDH GDMDFKIAGT G+T QLD+K G+P DI E ++ R++I+ M
Sbjct: 487 DILGAEDHFGDMDFKIAGTPEGITGFQLDLKIQGLPFDITLEAIKQNRDARMKIIAIMAE 546
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD---GTLTV 658
+ R ++PR+ T+K D + + LIGP G R+I E +G +I + + G + V
Sbjct: 547 HLPESRQDLREHAPRIHTIKIDPEKIGALIGPGGKNIRRITEVSGAQIDIDEDNSGRVLV 606
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A ++ M++ +++V+ EIEVG Y+G+V +K++GAFVE G++GL+H+SEL+
Sbjct: 607 FATDKESMDRAIQEVELCTA-EIEVGKTYRGIVRGIKDFGAFVECLPGKEGLVHISELAD 665
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
V++ D+ +G ++ ++CIG + +G ++LS KA
Sbjct: 666 FRVNKTEDICKLGDEMVVKCIGME-KGKVRLSRKA 699
>gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
Length = 710
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 446/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ LA++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 ELDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|381405879|ref|ZP_09930563.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. Sc1]
gi|380739078|gb|EIC00142.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. Sc1]
Length = 711
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 302/712 (42%), Positives = 450/712 (63%), Gaps = 17/712 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTADELKQSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + +E L +AGK + +++ +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEAANT 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + I + AL E + +
Sbjct: 241 PLISRVAALAEARISDAYRITD----KQERYSQVGVIKDETIAALLAEDETLDSAEISDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 VHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 417 KAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ E L A
Sbjct: 474 ----KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PRT+ +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEAD 761
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P+A+
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATESKPQAE 700
>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
4-46]
gi|226702664|sp|B0UEX5.1|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
4-46]
Length = 725
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 309/713 (43%), Positives = 451/713 (63%), Gaps = 17/713 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ +T +EE G R + LETGK+AR A+GAVV ET VL+TV S K DFLPLT
Sbjct: 1 MFDTQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS
Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ A SAAL LS +P+ GPIG R+G + GQ+ +NPT+ E+ S L+LV A
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H +E IRLAEKA K+ ++++ + ++E
Sbjct: 181 GTDAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLTE 240
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ--VLPK 350
+EK V + EA + + K ER A+D + V AL E E + +
Sbjct: 241 --VEKAVLEIGEADLREAYR--KTVKQERYAAVDAVKAKVMAALVPEGGEAKFEPEKVKA 296
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A V+ +V+R I+ G R+DGR + VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 297 AFKEVQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVAT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 357 LGTGDDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLL 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
PP ++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E
Sbjct: 417 PPAHEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILE---- 472
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE Y +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A +
Sbjct: 473 -GE--RYAVLSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKE 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR IL M + ++A R + ++PR+ T++ D +R +IG G + R+I E+TG +I
Sbjct: 530 GRAHILGEMAKALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKID 589
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D G + + + + ++ + I+ E E G IY G V E+GAFV F G + G
Sbjct: 590 IQDTGVVKIASSDGKAIKAAYNWIRSIVA-EPEAGMIYDGTVVKTMEFGAFVNFFGAKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
L+H+SEL+ + V++V+DVV G ++ ++ +GQD RG I+LS+K V + D+
Sbjct: 649 LVHISELAPQRVAKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDL 701
>gi|339477992|ref|YP_004706812.1| polyribonucleotide nucleotidyltransferase [Candidatus Moranella
endobia PCIT]
gi|338172543|gb|AEI74944.1| polyribonucleotide nucleotidyltransferase [Candidatus Moranella
endobia PCIT]
Length = 703
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 447/705 (63%), Gaps = 16/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T VL TV +K + + + PLT
Sbjct: 7 LLTPLVHKFQYGQHTVTLETGIMARQATAAVMVSMDDTAVLVTVVGAKDAKIGQSYFPLT 66
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFPAGF +EVQV+A+V+S
Sbjct: 67 VNYQERTYAAGRFPGGFFRREGRPSEGETLIARLIDRPIRPLFPAGFLNEVQVIATVVSG 126
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SA L LS IP+ GPIG R+G I Q+++NPT EL+ S L+LV A
Sbjct: 127 NPQVSPDIVAMIGVSAVLSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVA 186
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE+ + + H + +E +L AGK K Y + +
Sbjct: 187 GTENAVLMVESEAQLLSEEQMLGAIVYGHNQQQVVIENIHQLVTLAGKPKWPYNMPDVDV 246
Query: 294 QTLEKVSNLAEAHIEAVFTDPSY--SKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
E+V+ LAEA + +D Y K ER LD I DV + L + D + +
Sbjct: 247 ALQERVTELAEARL----SDAYYITQKQERYAMLDAIKADVVEELTSKDDNINQNTIRDI 302
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ T+ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 303 LGTLEKNVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 362
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G AQ ++ L G +RF+LHY+FPP+C+ E+G RRE+GHG LA++ ++AV+P
Sbjct: 363 GTERNAQNIDELTGERIERFLLHYNFPPYCVGEIGVVGAPKRREIGHGRLAKRGVMAVMP 422
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL+ E D
Sbjct: 423 NASEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLIKEKD--- 479
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DIL EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 480 ----NFMVLSDILSDEDHLGDMDFKVAGSREGITALQMDIKIEGINSEIMQVALNQAKSA 535
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ ILD ME IS+PR +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 536 RMHILDVMELAISSPRGDISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 595
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V + + + + +++ I EIEV +Y G VT + ++GAFV GG++GL
Sbjct: 596 EDDGTVKVSSNDSNKARAAICRIEEITS-EIEVNRVYNGKVTRIVDFGAFVALVGGKEGL 654
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
+H+S+++++ + +V+D + +GQ++ ++ + D +G ++LS+K S
Sbjct: 655 VHISQIANKRIDKVNDYLELGQEVHVKVLEVDRQGRVRLSIKEAS 699
>gi|187471094|sp|A8IGA3.2|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 724
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/709 (42%), Positives = 452/709 (63%), Gaps = 23/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + G R + LETGK+AR A+GAV +T VL+TV S++ +DF PLT
Sbjct: 1 MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL+
Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ A SAAL LS +P+ GPIG R+G + ++++NPT++EL S L+LV A
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE+ + + H +E IRLAEKA K+ + ++ +
Sbjct: 181 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFE--PVDH 238
Query: 294 QTLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
LE K+ +AEA + A + K R EA+ VKK E+ + Q PKA
Sbjct: 239 SALEAKIREIAEADLRAAYK--IKQKQARYEAVGAAKSKVKKYFEQLAIDG--QEAPKAQ 294
Query: 353 DT------VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
D + +++R I+ +G+R+DGR + VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 295 DVAEVLKGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQAL 354
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 355 VVATLGTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAI 414
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP +++FPYT+RV SE++ S+GS+SMATVCG S++LMDAG+PL+ VAG+++GL+ E
Sbjct: 415 HPMLPAKHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILE 474
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
GE + +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK AGI +I+ L
Sbjct: 475 -----GE--KFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALA 527
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR IL M + +++ R + ++PR+ +K D +R +IG G + R+I E+TG
Sbjct: 528 QAKDGRAHILGEMSKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTG 587
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ DGT+ + + + ++ + + I E EVG IY G V V ++GAFV F G
Sbjct: 588 AKINIEDDGTIKIASASGDSIKAAINWIKS-IASEPEVGAIYDGTVVKVVDFGAFVNFFG 646
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+LS E V++ SDVV G ++ ++ +G D RG +LS+KAV
Sbjct: 647 SKDGLVHISQLSKERVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAV 695
>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
Length = 711
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/694 (42%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K + +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E LS L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAE + + K R E +D I DV L E + S + + + ++
Sbjct: 246 KALAEVRLGDAYR--ITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITSEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR++ +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + ++V+E+++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKRVMERIEEIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RV+D +SVGQ++ ++ + D +G I+L++K
Sbjct: 656 ARVERVADYLSVGQEVQVKVVEIDRQGRIRLTMK 689
>gi|365103232|ref|ZP_09333264.1| polyribonucleotide nucleotidyltransferase [Citrobacter freundii
4_7_47CFAA]
gi|363645571|gb|EHL84834.1| polyribonucleotide nucleotidyltransferase [Citrobacter freundii
4_7_47CFAA]
Length = 710
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 446/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ LA++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKLRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 ELDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
excentricus CB 48]
gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
excentricus CB 48]
Length = 760
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/712 (43%), Positives = 447/712 (62%), Gaps = 26/712 (3%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLP 111
T + + ++ E R +TLETG+IAR A+ AV+ ET VL+TV ++ +DF P
Sbjct: 9 THMFDIKRKTIEWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFP 68
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK FA G IP Y +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL
Sbjct: 69 LTVNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVL 128
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DPDI+ A SAAL LS +P+ GPIG R+G I ++++NP++D++ S L+LV
Sbjct: 129 SHDMENDPDILGMVAASAALTLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESALDLV 188
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T++ +M++ +A+E+SE + L AH ++ I LAE A K+ E++
Sbjct: 189 VAGTQDALMMVESEAQELSEDKMLGALMFAHAGMQPVIDAIIELAEHAAKEPFEFEAEDF 248
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL------EEECDEESL 345
S+ + K+ +L I A + K ER A +G+ KKA EE +
Sbjct: 249 SD-VVAKIKDLVGPDIIAAYA--HKGKHERHAA---VGEAKKKAAAVLVKSEENPEGYEP 302
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A V+R+ II G RVDGR +D+VR I E G LP HGS+LF+RG+TQ
Sbjct: 303 AIFGSAFKECEADVLRRDIIDHGKRVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQA 362
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG + Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 363 LVVATLGTGEDEQFIDALEGTYKERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRA 422
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP +FPYT+RV SE+ S+GS+SMATVCG S++LMDAG+PL+ V+G+++GL+
Sbjct: 423 IRPMLPSAEEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPVSGIAMGLIL 482
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D Y +L+DILG EDHLGDMDFK+AGT +G+T++Q+DIK GI +I+ + L
Sbjct: 483 EKD-------GYAVLSDILGDEDHLGDMDFKVAGTELGITSLQMDIKVPGITEEIMTKAL 535
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A++GRL IL M + IS R + +P++ T+K D +R +IG G + R+I E+T
Sbjct: 536 RQANEGRLHILGEMNKAISGAREELGEFAPKIETIKIATDKIREVIGSGGKVIREIVEKT 595
Query: 646 GGRISVS-DGTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVE 702
G +I + DGT+ + A +S K+ D+I I E E+G IYKG V V ++GAFV
Sbjct: 596 GAKIDIGEDGTIKIAASEQS---KIDAARDWIKSIASEPEIGAIYKGKVVKVVDFGAFVN 652
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
F G + GL+H+S++ +E V++ SDV+S G ++ ++ +G D RG KLS+K V
Sbjct: 653 FFGAKDGLVHISQIKNEKVAKTSDVLSEGDEVKVKFLGFDDRGKTKLSMKVV 704
>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
Length = 706
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/711 (42%), Positives = 447/711 (62%), Gaps = 12/711 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK K ++ I+
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ ++V L+EA + + K ER +D I DV AL E D L +
Sbjct: 241 ELHDRVKALSEARLGDAYR--ITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K V+R R+++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SIEKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQIIDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKP 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 EAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+Y +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NYVVLSDILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKYAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K + + + V+
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATSQSQETVQ 701
>gi|395227958|ref|ZP_10406283.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. A1]
gi|421846455|ref|ZP_16279603.1| polynucleotide phosphorylase/polyadenylase [Citrobacter freundii
ATCC 8090 = MTCC 1658]
gi|424732929|ref|ZP_18161501.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. L17]
gi|394718454|gb|EJF24084.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. A1]
gi|411772332|gb|EKS55958.1| polynucleotide phosphorylase/polyadenylase [Citrobacter freundii
ATCC 8090 = MTCC 1658]
gi|422892745|gb|EKU32598.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. L17]
gi|455644685|gb|EMF23778.1| polynucleotide phosphorylase/polyadenylase [Citrobacter freundii
GTC 09479]
Length = 710
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 445/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ LA++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 ELDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|387887760|ref|YP_006318058.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae DSM
4481]
gi|414594222|ref|ZP_11443861.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae NBRC
105725]
gi|386922593|gb|AFJ45547.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae DSM
4481]
gi|403194812|dbj|GAB81513.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae NBRC
105725]
Length = 710
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/705 (42%), Positives = 450/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A+ AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQASAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK + +++ ++E
Sbjct: 181 GTDSAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALVNEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDV---KKALEEECDEESLQVL 348
+V LAE+ + + TD K ER +D I +V KA +E DE L +
Sbjct: 241 ALNARVGALAESRLSDAYRITD----KQERYAQVDLIKSEVIATLKAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQTLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P ++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPTMDEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 474 -------NFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLHMGQEVPVKVLEVDRQGRVRLSMK 690
>gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB114]
gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB114]
Length = 692
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 293/695 (42%), Positives = 448/695 (64%), Gaps = 15/695 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQE 118
K+E + +++ETGKIAR A+GAV+L +T ++ST V S K + DF PLTV+YQE
Sbjct: 6 KKEINWAGKNLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +RE P E E L+ R+IDRPIRPLFP F +E QV+ +VLS D + D
Sbjct: 66 KFYAAGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSYDKECD 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A+SAAL +S +P+ GP+ ++G I G+FI+NP+ + + S+L LV A T+E
Sbjct: 126 PDILAVIASSAALSISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNLELVVAGTKEA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A ++E + ++ H + + LA++A K K E + SE K
Sbjct: 186 VLMVESEASGLTEAQMLDAVKFGHENFLPVINLIEELAKEASKPKWEIESKDFSELK-SK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+S+ + H+ F++ K +R + + + V+K E + +Q+ + + ++ K
Sbjct: 245 ISSEVKDHLVKAFSEKD--KKQRSSMISEANEKVEKLFEGDETYTKVQIKDQ-LKSLEKD 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R +I+ E R+DGR+LDEVR I CE G +P HGSSLF+RG+TQ + TLG + Q
Sbjct: 302 IVRTKILKEKSRIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDDEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
R ESL G RFMLHY+FPPF + EVG+ G RRE+GHG LA +A+ A LP DFPY
Sbjct: 362 RFESLEGMQKSRFMLHYNFPPFSVGEVGRVGGTGRREIGHGKLAWRAINAALPKHEDFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ S++ S+GS+SMATVCG SMALM AG+P+++ +AG+++GL+ E + ++
Sbjct: 422 TIRIVSDITESNGSSSMATVCGSSMALMHAGVPIEKPIAGIAMGLIKEGN-------EFS 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK GI +I+ + LE A KGRL IL+
Sbjct: 475 VLSDILGDEDHLGDMDFKVAGSADGITSLQMDIKINGITFEIMEKALEQAKKGRLDILNE 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M + I + + +PR+ ++ D + +IG GA R+I E +G ++ ++D G +T
Sbjct: 535 MAKAIKESNKELSQYTPRMEKIQVDKKDIATVIGKGGANIREIVEVSGAKVDINDSGEVT 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
V A ++ +K ++ ++ ++ + EVG IY G V + ++GAFV F G Q GL+H+S+L+
Sbjct: 595 VSAADQETRDKAIQMINSLVEKP-EVGKIYSGKVVKIMDFGAFVNFLGKQDGLVHISQLA 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +VSDVV G +++++ IG D RG +KLS+K
Sbjct: 654 EKRVEKVSDVVKEGDEVNVKVIGFD-RGKVKLSIK 687
>gi|374852729|dbj|BAL55655.1| polyribonucleotide nucleotidyltransferase [uncultured Chloroflexi
bacterium]
Length = 743
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/696 (44%), Positives = 429/696 (61%), Gaps = 20/696 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQ 123
+G R+IT ETGK+A ANGAV + + ET + + T SK DF PL+V+Y+E+ +A
Sbjct: 12 VGGRVITFETGKLAGQANGAVTVQLGETMIFAAATMSKTARADVDFFPLSVEYEERMYAG 71
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP ++ RREG P +L R+ DRPIRPLFP G +EVQ++ LS D + DI+A
Sbjct: 72 GRIPGSFFRREGKPSTEAILTARLADRPIRPLFPKGMRNEVQIIMYSLSVDNENPIDILA 131
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
NA SAALM+SDIPW GP+G +R+G + G+F+VNPT E+ SDL+L A TR+ LM++
Sbjct: 132 INAASAALMISDIPWNGPVGAVRVGLLDGEFVVNPTFQEMERSDLDLRIAGTRDAILMVE 191
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEK----AGKQKKEYKLSMISEQTLEKV 299
A+E+ E + A L H + L+P I L E+ GK K E L + E LE V
Sbjct: 192 CGAKEVPEDVMVAALEFGH----RALQPLIDLQEQMRAEVGKPKAEPILILPDETLLESV 247
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+ + + P SK E ++ + V + + S Q + A KR+
Sbjct: 248 FERVKEPMSELLDKP-LSKEEFNSGMEALLAQVTAEMTTGENPPSPQDIQLAFTEAEKRL 306
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+ EG R DGR ++RPI+CE P HGS LF+RG+TQVL TLG +EAQ
Sbjct: 307 VRARIL-EGKRPDGRGPKDIRPIWCEVDIAPRAHGSGLFTRGETQVLTLATLGTLSEAQE 365
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++SL+ TKR+M HY+FPPF EV G +RRE+GHG LAE+AL V+PPE++FPYT
Sbjct: 366 IDSLIPQETKRYMHHYNFPPFSTGEVKPLRGQSRREIGHGALAERALEPVIPPESEFPYT 425
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV++S+GSTSMA+VCG ++ALMD G+P++ VAGV++GLV E D Y I
Sbjct: 426 LRLVSEVLSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLVKEGD-------RYVI 478
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDI G EDHLGDMDFK+AGT G+TA+Q+DIK G+ +I+ E LE A + RL IL+ M
Sbjct: 479 LTDIQGAEDHLGDMDFKVAGTAKGITALQMDIKIGGLTKEIMAEALEQARQARLAILEKM 538
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
I APR + ++PR+ T+ D + LIGP G R I++ET I + DGT+ +
Sbjct: 539 LEVIPAPRPELKPHAPRITTVLIPTDKIGVLIGPGGKTVRAIQQETDTTIDIREDGTVYI 598
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+A N +++ ++ E EVG IY G V ++GAFVE G G++H+S+L
Sbjct: 599 LATNAENARAARDRIKWLTA-EPEVGEIYTGRVVRTTDFGAFVEILPGTDGMVHISQLDT 657
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V+RV DVV VG ++++ D G I+LS +AV
Sbjct: 658 TRVNRVEDVVKVGDEITVMVTDIDPDGKIRLSRQAV 693
>gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
29220]
gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
29220]
Length = 710
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/702 (42%), Positives = 446/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ LA++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQSLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DLDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|393720906|ref|ZP_10340833.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas echinoides
ATCC 14820]
Length = 791
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/706 (41%), Positives = 448/706 (63%), Gaps = 21/706 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQ 120
+ G + +TLETG++AR ANGAV+ + ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 10 QWGGKTLTLETGRVARQANGAVMATLGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEKY 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+ VLS DG+ +PD
Sbjct: 68 SAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENEPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A A SAAL +S +P+ GPIG R+G + G++++NPT+D++ DL+LV A T E +
Sbjct: 128 VLAMVAASAALTISGVPFMGPIGAARVGYVDGEYVLNPTLDQVKEGDLDLVVAATGEAVM 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E+SE+ + ++ AH + + I LAE+A K E +K+
Sbjct: 188 MVESEAKELSEEVMLGAVQFAHKACREAVNLIIDLAEQAAKDPWEMAAQADLSAAKDKLK 247
Query: 301 NLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
L I A + TD S ER L+ K+A + ++ + K V +
Sbjct: 248 KLIGKDIAAAYKVTDKS----ERSNLLNAARAKAKEAFADAAPQDQMAA-QKLVKKLEAE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ +G R+DGR ++RPI LP HGS+LF+RG+TQ +CT TLG Q
Sbjct: 303 IVRGAILKDGQRIDGRTTTQIRPIEAIVHFLPRAHGSALFTRGETQSICTTTLGTKDAEQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +++FPY
Sbjct: 363 MIDGLTGLSYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E K +
Sbjct: 423 TIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG-------KKFA 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I+ + LE A +GR IL
Sbjct: 476 VLSDILGDEDHLGDMDFKVAGTEAGITTMQMDIKIAGITEEIMRKALEQAKEGRAHILGE 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M + +S+ RT+ ++PR+ TL+ D +R +IG G + R+I +TG ++ + D G +
Sbjct: 536 MNKALSSTRTELSAHAPRIETLQIDKSKIREVIGTGGKVIREIVAQTGAKVDIDDEGLIK 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + +E ++ + I+ E EVG +Y G V ++ ++GAFV F GG+ GL+HVSE+
Sbjct: 596 ISSSDTAQIEAAIKWIKGIV-EEAEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIK 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+E V +V+DV+ GQ + ++ + D RG ++LS++ V A+++
Sbjct: 655 NERVEKVADVLKEGQDVKVKVLEIDPRGKVRLSMRVVDQETGAEIE 700
>gi|372275452|ref|ZP_09511488.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. SL1_M5]
gi|390436777|ref|ZP_10225315.1| polynucleotide phosphorylase/polyadenylase [Pantoea agglomerans
IG1]
Length = 712
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/712 (42%), Positives = 450/712 (63%), Gaps = 17/712 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVAMIGASAALALSGLPFNGPIGSARVGYINDQYVLNPTADELKQSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + +E L +AGK + +++ +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANT 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + I + AL E + +
Sbjct: 241 ALISRVAALAEARISDAYRITD----KQERYTQVGVIKDETIAALLAEDETLDGSEIGDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 VHSLEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 417 KAEDFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ E L A
Sbjct: 474 ----KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQARGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PRT+ +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRVYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEAD 761
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P+A+
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATESKPQAE 700
>gi|386389873|ref|ZP_10074672.1| polyribonucleotide nucleotidyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385694418|gb|EIG25023.1| polyribonucleotide nucleotidyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 707
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/717 (41%), Positives = 449/717 (62%), Gaps = 19/717 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E LV R+IDRP+RPLFP GF++E+QV+A+V+S + + PD
Sbjct: 67 YAAGRIPGGFFKREGRPSESETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A SAAL LS +P+ GPIG R+G I QF++NPT E LS L+LV A T + L
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKLSRLDLVVAGTDKAVL 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+ + + + H + +E ++AGK + ++ + + KV
Sbjct: 187 MVESEADILTEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE+ I + K R E +D I +V L E + S + + + +++
Sbjct: 247 ALAESRIGDAYR--ITEKQARYEQIDTIKAEVIATLTAEDETVSEGAIIDIITALESQIV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ +
Sbjct: 305 RSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQII 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY V
Sbjct: 365 DELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYVV 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +L
Sbjct: 425 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL+ ME
Sbjct: 478 SDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILNVME 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 538 QAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + V+ +++ I+ E+EV +YKG VT V ++GAFV GG++GL+H+S+++ E
Sbjct: 598 ATDNNAAKAVMARIEEIVA-EVEVNAVYKGKVTRVVDFGAFVSILGGKEGLVHISQITDE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQA 776
V RV+D +SVGQ++ ++ + D + I+L++K V+ EA+V + PV +QA
Sbjct: 657 RVERVADYLSVGQEVMVKVVEIDRQNRIRLTMKDVN-NAEAEV------ATPVEEQA 706
>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|440758706|ref|ZP_20937865.1| Polyribonucleotide nucleotidyltransferase [Pantoea agglomerans
299R]
gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|436427634|gb|ELP25312.1| Polyribonucleotide nucleotidyltransferase [Pantoea agglomerans
299R]
Length = 711
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/712 (42%), Positives = 449/712 (63%), Gaps = 17/712 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVAMMGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + +E L +AGK + +++ +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANT 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + I + AL E + +
Sbjct: 241 ALISRVAALAEARISDAYRITD----KQERYTQVGVIKDETIAALLAEDETLDGSEIGDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 VHSLEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 417 KAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ E L A
Sbjct: 474 ----KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PRT+ +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRVYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEAD 761
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P+ +
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATESKPQTE 700
>gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591]
gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591]
Length = 706
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/710 (42%), Positives = 447/710 (62%), Gaps = 18/710 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK K ++ ++
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWSWQAPDVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPK 350
+ +V L+EA + + K ER +D I DV AL +E DE L+ +
Sbjct: 241 ELHNRVQALSEARLGDAYR--ITEKQERYAQVDTIKADVVAALLAEDETLDENELRDI-- 296
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ ++ K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 297 -LGSIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+
Sbjct: 356 LGTERDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 416 PKPEAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+Y +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 474 -----NYVVLSDILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKG 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I
Sbjct: 529 ARLHILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIE 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + + + +++ I EIEVG IY+G VT + ++GAFV GG++G
Sbjct: 589 IEDDGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
L+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K + +P+
Sbjct: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAQPQ 697
>gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103]
gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103]
Length = 757
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 302/724 (41%), Positives = 452/724 (62%), Gaps = 17/724 (2%)
Query: 42 APPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS 101
A + AP + +L +F+ G +TLETG +AR A AV++ MD+T V TV
Sbjct: 36 AQYSTAPMLRTLILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQ 95
Query: 102 KGDSV-RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGF 160
K +DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF
Sbjct: 96 KKTKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGF 155
Query: 161 YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTM 220
+EVQV+A+V+S + + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT
Sbjct: 156 VNEVQVIATVVSVNPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTA 215
Query: 221 DELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAG 280
DEL S L+LV A T+ LM++ +A +SE+ + + H + +E L +AG
Sbjct: 216 DELKTSRLDLVVAGTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAG 275
Query: 281 KQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEE 338
K + +++ + + +V+ LAE I + TD K ER + I + AL
Sbjct: 276 KPRWDWQPEQANTALISRVAALAETRISDAYRITD----KQERYTQVGVIKDETIAALLA 331
Query: 339 ECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLF 398
E + + V ++ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF
Sbjct: 332 EDESLDAAEIGDIVHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALF 391
Query: 399 SRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGH 458
+RG+TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GH
Sbjct: 392 TRGETQALVTATLGTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGH 451
Query: 459 GTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAG 518
G LA++ +LAV+P DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG
Sbjct: 452 GRLAKRGVLAVMPKAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAG 511
Query: 519 VSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPL 578
+++GLV E D + +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI
Sbjct: 512 IAMGLVKEDD-------KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITR 564
Query: 579 DIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALK 638
+I+ L A RL IL ME+ IS PR + +PR+ T+K ++D ++ +IG G++
Sbjct: 565 EIMQVALNQAKGARLHILGVMEQAISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVI 624
Query: 639 RKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEY 697
R + EETG I + DGT+ + A + ++ + +++ I EIEVG IY G VT + ++
Sbjct: 625 RALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDF 683
Query: 698 GAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
GAFV GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A
Sbjct: 684 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATET 743
Query: 757 RPEA 760
+PEA
Sbjct: 744 KPEA 747
>gi|386743797|ref|YP_006216976.1| polynucleotide phosphorylase/polyadenylase [Providencia stuartii
MRSN 2154]
gi|384480490|gb|AFH94285.1| polynucleotide phosphorylase/polyadenylase [Providencia stuartii
MRSN 2154]
Length = 707
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 288/700 (41%), Positives = 452/700 (64%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+L +F+ G +++ETG IAR A AV++ MD+T V T V K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +E+Q++A+V+S
Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL LS L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE+ + + H + ++ L ++AGK+K +++ +++
Sbjct: 181 GTESAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+KV+ LAE+ + + K ER E +D I ++V A+ E + + + +
Sbjct: 241 ALRDKVAALAESRMGDAYR--ITEKQERYEQVDLIKEEVTAAIVAEDENVDVAEVADILA 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K+V+R R+I R+DGR+ D VR + + LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NLEKQVVRSRVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ ++AV+P
Sbjct: 359 ERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDH 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 ADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --DFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I++PR +PR+ T++ + D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGTMEQAINSPRDDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + ++ + +++ I E+EVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGLKAKEAIRRIEEITA-EVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis sp.
HTCC2633]
gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis sp.
HTCC2633]
Length = 709
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 312/703 (44%), Positives = 441/703 (62%), Gaps = 24/703 (3%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQ 117
E E R +TLETG++AR ANGAV+ ET VL+T + K V+ DF PLTV+YQ
Sbjct: 7 ETIEWAGRTLTLETGRMARQANGAVLATYGETTVLATAVAQK--DVKPGVDFFPLTVNYQ 64
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK FA G IP Y +REG P ++E L R+IDRPIRPLFP GF ++ QVM +VLS D +
Sbjct: 65 EKYFAAGKIPGGYFKREGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSHDLEN 124
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPD++ SAAL LS +P+ GPIG R+G G++I+NPT+ E+ ++L+LV A T +
Sbjct: 125 DPDVVGMIGASAALCLSGLPFLGPIGAARVGYKDGEYIINPTVAEMDDTELDLVVAGTSD 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E+SE+ + + H ++ IRLAEKA K E++ S+ LE
Sbjct: 185 AVMMVESEAKELSEETMLGAVMAGHEAFQPVIDMIIRLAEKAAKDPWEFEPEDHSD--LE 242
Query: 298 -KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVD 353
KV L I +T +K ER A+ + L EE D + VL +
Sbjct: 243 AKVKALVGDEIAKAYT--ITNKTERQAAVSAAKEKAVAELAATEENPDGADMVVLKDVLK 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V V+R II G R+DGR LD+VRPI E+ LP HGS+LF+RG+TQ L VTLG
Sbjct: 301 GVEASVVRGGIIKTGKRIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G +RF+LHY+FPP+ + E R+ RRE+GHG LA +AL AV+P
Sbjct: 361 GEDEQFIDALTGTYKERFLLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRALNAVMPNA 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYTVR+ SE+ S+GS+SMATVCGGS+ALMDAG+P+ V+G+++GL+ DP
Sbjct: 421 ETFPYTVRLVSEITESNGSSSMATVCGGSLALMDAGVPITRPVSGIAMGLIK--DP---- 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI DI+ L A GR+
Sbjct: 475 -EGVAVLSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITKDIMQTALNQAKGGRM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL+ M + +S R + ++P++ T++ D +R +IG G + R+I EETG ++ V+D
Sbjct: 534 HILEEMNKALSGTREALNEHAPKIETIQIPTDKIRDVIGSGGKVIRQIVEETGAKVDVND 593
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
L V+ + + + +D+I G E EVG IYKG V V ++GAFV F G + GL+
Sbjct: 594 EGLIKVSSVSA--DSIKAALDWIKGLTAEPEVGEIYKGKVVKVVDFGAFVNFFGPRDGLV 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++ +E V DVVS GQ++ ++ +G D RG ++LS+K V
Sbjct: 652 HVSQMKNERVGHPKDVVSEGQEVWVKLLGFDDRGKVRLSMKVV 694
>gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter
uraniireducens Rf4]
gi|187610269|sp|A5GF91.1|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens
Rf4]
Length = 696
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 302/703 (42%), Positives = 439/703 (62%), Gaps = 22/703 (3%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
+ET K + E G R IT+ETGK+A+ A+GAVV+ +T VL T ++K +DF PLTV
Sbjct: 1 MET-KVQVEFGGRTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTV 59
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +RE P + E L R+IDRPIRPLFP F ++ Q+MA+V+S+D
Sbjct: 60 NYQEKAYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSAD 119
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
DP I++ SAALM+SDIP+ GPI +++GR+ G+FI NPT DE+ SD+ +V A
Sbjct: 120 KDNDPGILSMVGASAALMVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSDIEIVVAA 179
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
+++ +M++ A E+SE+D+ + H L Q L KAG K+E ++E+
Sbjct: 180 SKDAVIMVEGSAAEVSEEDMLEAIFFGHAAIQPLLAAQEELCSKAGVAKREVPPPAVNEE 239
Query: 295 TLEKVSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEE---CDEESLQVLPK 350
V ++A A + EAV SK ER ++D I + AL E CD++ +
Sbjct: 240 LKANVKDIAYARMKEAVRIK---SKVERHNSIDAISAETLAALATEFEGCDKQ----IKA 292
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ ++R+ I+ +G R+DGR +R I E LP HGS+LF+RG+TQ L T
Sbjct: 293 FLGDFEYELVREHILKDGERIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAAT 352
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + QR++SL G KRF+LHY+FPPF + E R+G RRE+GHG LAE+AL VL
Sbjct: 353 LGTSIDEQRIDSLFGESKKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVL 412
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +DFPYT+R+ S+++ S+GS+SMA+VCGGSM++MDAGIP++ VAG+++GL+ E
Sbjct: 413 PKHDDFPYTIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKE---- 468
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE D+ IL+DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L+ A +
Sbjct: 469 -GE--DFAILSDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGIALKQALE 525
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M I ++ +PR+ T+ D +R +IG G R I E TG I
Sbjct: 526 GRLHILGRMADTIKTSKSDLSTYAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTID 585
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D G + + + +++ + ++ + + E E G +Y G+V V E+GAFVE G G
Sbjct: 586 IDDTGKINIASTDKAACDLAIKMIRDLTA-EAEEGKLYMGLVKKVMEFGAFVEIFPGTDG 644
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
L+H+SEL E V V+D++ G ++ ++CIG D +G IKLS K
Sbjct: 645 LVHISELDTERVKNVTDILKEGDKVLVKCIGIDKQGKIKLSRK 687
>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
gi|254782722|sp|B8F492.1|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
Length = 709
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/694 (42%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K + +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E LS L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV L E + S + + + ++
Sbjct: 246 KALAEARLGDAYR--ITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR++ +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + ++V+E+++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKRVMERIEEIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITD 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RV+D +SVGQ + ++ + + +G I+L++K
Sbjct: 656 ARVERVADYLSVGQDVQVKVVEIERQGRIRLTMK 689
>gi|378582097|ref|ZP_09830737.1| polynucleotide phosphorylase/polyadenylase [Pantoea stewartii
subsp. stewartii DC283]
gi|377815412|gb|EHT98527.1| polynucleotide phosphorylase/polyadenylase [Pantoea stewartii
subsp. stewartii DC283]
Length = 709
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/711 (42%), Positives = 447/711 (62%), Gaps = 17/711 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + +E L +AGK + +++ +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEAANT 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K R +D I + AL E + +
Sbjct: 241 ALISRVAALAEARISDAYRITD----KQARYAQVDAIKDETIAALLAEDESLDAAEIGDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 VHSLEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 KVEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 474 ----KFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K +D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +PEA
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATETKPEA 699
>gi|343518066|ref|ZP_08755062.1| polyribonucleotide nucleotidyltransferase [Haemophilus pittmaniae
HK 85]
gi|343394917|gb|EGV07464.1| polyribonucleotide nucleotidyltransferase [Haemophilus pittmaniae
HK 85]
Length = 710
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 440/703 (62%), Gaps = 12/703 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF +E+Q++A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG+ R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGVARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E A +AGK + ++ + + KV
Sbjct: 186 LMVESEADVLSEEQMLSAVVFGHQQQQVVVEAIKEFAREAGKPRWDWTAPAVDTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAENEEVSEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L G F+ HY+FPP+ + E G+ RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 LDELTGERQDHFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALKQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR + +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRAEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ ++D I E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDNNAAKAVMARIDEITA-EVEAGAIYKGKVTRLADFGAFVAIIGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
E V +VSD + VGQ++ ++ + D +G I+L++K ++P+ A+
Sbjct: 656 ERVEKVSDYLQVGQEVDVKVVEIDRQGRIRLTMKELAPKQTAE 698
>gi|451945658|ref|YP_007466253.1| polyribonucleotide nucleotidyltransferase [Desulfocapsa sulfexigens
DSM 10523]
gi|451905006|gb|AGF76600.1| polyribonucleotide nucleotidyltransferase [Desulfocapsa sulfexigens
DSM 10523]
Length = 690
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 297/696 (42%), Positives = 452/696 (64%), Gaps = 15/696 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQ 120
E E+G + I+LETGK+A+ A+G+V++ T VL TV + K + FLPLT++YQE+
Sbjct: 6 EVEVGDKTISLETGKVAKQADGSVIMRTGGTVVLVTVVAGKENKPELGFLPLTIEYQERM 65
Query: 121 FAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP Y RRE G P ++E+L RIIDRP+RPLF G++ E Q++A+VLS+D + DP
Sbjct: 66 AAVGRIPGNYFRREIGRPSDQEVLTCRIIDRPLRPLFADGYFSETQIIATVLSADQQNDP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A N S AL +SDIP+GGPI R+G + G++++NPT DEL S ++++ ACT +
Sbjct: 126 DILALNGASCALSISDIPFGGPIAGARVGYVDGEYVLNPTKDELKNSRMDMIVACTSDAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
M++ + +SE ++ + + QI L + GK K+ + ++E+ L KV
Sbjct: 186 TMVEGKVDTMSEDEVLNAIFFVFDSVQPLIAMQIDLRKSHGKAKRIVEPVPVNEELLAKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+A + V + K ERG A D++ + V +L+ E E+ + + + + +K++
Sbjct: 246 QEIAAEGMAKVIV--TADKMERGSAYDELKKSVIASLDPEG--ENAKEISELLSGYKKKI 301
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R +I+ + VR+DGR ++VRPI E LP HGS+LF+RG+TQ + T TLG+ ++QR
Sbjct: 302 MRAQIVNDEVRLDGRAFNQVRPISSEVTYLPQTHGSALFTRGETQSIVTATLGSQRDSQR 361
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
+E+L G RFM+HY+FPPFC+ E G +RR++GHGTLA + L AVLP E DFPY+
Sbjct: 362 VETLQGEENNRFMVHYNFPPFCVGEARFLRGPSRRDIGHGTLALRGLSAVLPDEEDFPYS 421
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+RV S++M S+GS+SMATVCGGSMA+MDAG+PL+ V+G+++GL+ E D I
Sbjct: 422 IRVVSDIMESNGSSSMATVCGGSMAMMDAGVPLKAPVSGIAMGLIKEDDKIV-------I 474
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFKI GT G+TA+Q+DIK G+ DI+ + L A +GR+ IL M
Sbjct: 475 LSDILGDEDHLGDMDFKIVGTADGITALQMDIKIDGVDRDIMKQALSQAQEGRIHILGEM 534
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
+ I+A R + +++P+ + K + D +R +IGP G + +++ E I V D G + +
Sbjct: 535 AKGINASREEVAQHAPKYFSYKINTDKIRDIIGPGGKIIKEMSAEYDATIEVDDSGLVKM 594
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
K+ S + +L K+ + EVG +YKG+V ++K++GAFVE G GL+H+SEL++
Sbjct: 595 FTKDGSKADALLRKIQEMTATA-EVGKVYKGIVKTIKDFGAFVEILPGTDGLVHISELAN 653
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V +V+DVV G +L ++ + D RG I+LS KA+
Sbjct: 654 ERVGKVTDVVKEGDELEVKVLEVDSRGRIRLSRKAL 689
>gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
Length = 706
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 302/710 (42%), Positives = 448/710 (63%), Gaps = 18/710 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK K ++ ++
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPDVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPK 350
+ +V L+EA + + K ER +D I DV AL +E DE L+ +
Sbjct: 241 ELHNRVQALSEARLGDAYR--ITEKQERYAQVDTIKADVVTALLAEDETLDENELRDI-- 296
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ ++ K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 297 -LGSIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+
Sbjct: 356 LGTERDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 416 PKPEAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE---- 471
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE +Y +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 472 -GE--NYVVLSDILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKG 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I
Sbjct: 529 ARLHILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIE 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + + + +++ I EIEVG IY+G VT + ++GAFV GG++G
Sbjct: 589 IEDDGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
L+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K + +P+
Sbjct: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATAQPQ 697
>gi|403057056|ref|YP_006645273.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402804382|gb|AFR02020.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 706
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/700 (42%), Positives = 442/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG R+G + Q+++NPTMDEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L +AGK K E+ ++
Sbjct: 181 GTEGAVLMVESEADILSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER +D I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NVEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
DSM 5159]
gi|257096714|sp|B9KYR9.1|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
DSM 5159]
Length = 790
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/708 (44%), Positives = 453/708 (63%), Gaps = 29/708 (4%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR--DFLPLTVDYQEKQ 120
EI RL+T+ETG++A A+GAV++ ET VL+TV +K V DF PLTV+Y+EK
Sbjct: 10 IEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAK-QPVEGIDFFPLTVEYEEKM 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + RREG P E +L R+ DRPIRPLFP G+ +EVQV+++VLS+D + +PD
Sbjct: 69 YAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ SAAL LSDIPW GP+G +RIG + G+ ++NPT +L S +++V A T + L
Sbjct: 129 VLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTADAIL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ QA EISE + AH E + + Q+ L AGK K+E+ + + ++++
Sbjct: 189 MVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQENVELKQQIA 248
Query: 301 N-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV------LPKA-- 351
+ L + EAVF + + AL + + + E L + LP A
Sbjct: 249 DYLGDRLREAVFNPDKTLRVQATAALRE------EVIAHFVPNEPLAIGTPQSGLPTAKE 302
Query: 352 ----VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
D++ K ++R+ I+ +G R DGR+ DE+R I+ + G LP HGS+LF+RG TQVL
Sbjct: 303 VGDLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLT 362
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG E Q L+SL TKR+M HY+FPPF E+ + G +RR++GHG LAE+ALL
Sbjct: 363 VCTLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALL 422
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AVLP E++FPYT+R+ SEV++S+GSTSMA+VCG S+ALMDAG+P+++ VAGV++GLV+
Sbjct: 423 AVLPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVT-- 480
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D +TG Y ILTDI G+ED LGDMDFK+AGTR G+TAIQ+DIK GI +I+ + LE
Sbjct: 481 DQTTGR---YTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GRL ILD M I APR + +PR+ +K + + +IGP G + R I+E+TG
Sbjct: 538 ARRGRLFILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGT 597
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+IS+ DGT+ + A N + + +++ + R EVG I+ G V ++ GAFVE G
Sbjct: 598 KISIEEDGTVFISAANEDAARRAVREIERLT-RVPEVGEIFYGRVVTIIPSGAFVEILPG 656
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ G LH+SE++ E V V DV+ VGQ++++ IG G I LS KA+
Sbjct: 657 KDGFLHISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKAL 704
>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
z3032]
gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
z3032]
Length = 711
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/708 (42%), Positives = 449/708 (63%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
++YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V LAE+ + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 ALNARVKALAESRLSDAYRITD----KQERYSQIDAIKADVIAALQAEQAEGDALDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 GDILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 474 E-----GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 693
>gi|402772329|ref|YP_006591866.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylocystis sp. SC2]
gi|401774349|emb|CCJ07215.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylocystis sp. SC2]
Length = 718
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 305/704 (43%), Positives = 453/704 (64%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFQIHREELDWAGRRLVLETGKIARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P ERE L+ R+IDRPIRPLFP G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSERETLISRLIDRPIRPLFPDGYRNDTQVIVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ A SAAL LS +P+ GP+G R+G I GQ +NPT++E+ LS+L+L+ A
Sbjct: 121 DLENDPDILSLVAASAALTLSGVPFMGPVGGARVGCINGQLKLNPTIEEMKLSELDLIVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ +A+E+SE+ + + L H ++ IRLAE+A K ++ ++ +E
Sbjct: 181 GTQDAVLMVESEAKELSEETMLEAVMLGHRGFQPVIDAIIRLAERAAKDPRDLVIADTTE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKA 351
V+ +AEA + + K ER A+D + V AL E E + + +A
Sbjct: 241 -VASAVAQIAEAELRDAYK--HTVKQERYAAVDAVKAKVAAALFPEGGEAKFTKEQVGEA 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ GVR+DGR + VRPI E G LP HGS+LF+RG+TQ L TL
Sbjct: 298 FKALQAKVVRWNILDTGVRIDGRDVKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +AL +LP
Sbjct: 358 GTGEDEQYVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+P++ AG+++GL+ E
Sbjct: 418 AAAEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPTAGIAMGLILE----- 472
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A G
Sbjct: 473 GE--RFAVLSDILGDEDHLGDMDFKVAGTSNGVTSLQMDIKIAGITEEIMKVALAQAKDG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + I++ R + +PR+ T+K D +R +IG G + R+I E+TG +I++
Sbjct: 531 RLHILGEMAKAITSSRAELGEFAPRIETMKIPTDKIRDVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V + + + ++ + + I + EVG IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKVASSDGNSIKAAINWIKS-IASDPEVGMIYEGTVVKTADFGAFVNFFGAKDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+LS + V++ +DVV G ++ ++ +G D RG ++LS++ V
Sbjct: 650 VHISQLSKQRVNKTTDVVKEGDRVKVKLLGFDDRGKVRLSMRVV 693
>gi|393771307|ref|ZP_10359780.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp. Rr
2-17]
gi|392723378|gb|EIZ80770.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp. Rr
2-17]
Length = 779
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/700 (43%), Positives = 443/700 (63%), Gaps = 24/700 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR ANGAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 MEWGGKTLTLETGRIARQANGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+ G IP + +RE E+E L R+IDRP+RPLFP GFY+E+ V+A VLS DG+ +P
Sbjct: 67 FSSAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD--LNLVYACTRE 237
DI+A A SAAL +S +P+ GPIG R+G + G++ +NP D +L D L+LV A T +
Sbjct: 127 DIVAMIAASAALTISGVPFMGPIGAARVGYVDGEYTLNPKQDA-ALKDGRLDLVVAATGD 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E++E ++ + AH E K + I LAEKA K+ E LS +
Sbjct: 186 AVMMVESEAKELTEDEMLGAVMFAHDEIRKVVNLIIDLAEKAAKEPWEVDLSDSTADIKA 245
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
K+ + + A + TD S R AL+ K+A E + + V KA+ V
Sbjct: 246 KLKKVVGKDVAAAYKLTDKS----ARSNALNAARAKAKEAFASETPQTQM-VAIKAMKKV 300
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R I+ +G R+DGR+LD+VRPI G LP HGSSLF+RG+TQ +CT TLG
Sbjct: 301 EADIVRTAILKDGQRIDGRKLDQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKD 360
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
Q ++ L G FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + D
Sbjct: 361 AEQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKED 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL V+G+++GL+ E D
Sbjct: 421 FPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEGDK------ 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT +G+T +Q+DIK AGI +I+ + LE A GR I
Sbjct: 475 -FAVLSDILGDEDHLGDMDFKVAGTELGITTMQMDIKIAGITKEIMGKALEQAKAGRAHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M + + + RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ + D G
Sbjct: 534 LGEMTKALGSSRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDDEG 593
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + + +E + + I+ E EVG +Y+G V ++ ++GAFV F GG+ GL+HVS
Sbjct: 594 VIKISSSDIAQIEAAKKWILGIV-EEAEVGKVYQGKVVNIVDFGAFVNFMGGKDGLVHVS 652
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E+ +E V + +DVV GQ + ++ + D RG ++LS++ V
Sbjct: 653 EMKNERVEKPTDVVKEGQAVFVKVLEIDPRGKVRLSMRVV 692
>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
trichosporium OB3b]
gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
trichosporium OB3b]
Length = 714
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 306/712 (42%), Positives = 450/712 (63%), Gaps = 15/712 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + R + LETGKIAR A+GAV ET VL+TV S+K +DF PLT
Sbjct: 1 MFQIHREELDWAGRKLVLETGKIARQADGAVFASWGETTVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P ERE LV R+IDRPIRPLFP G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL LS IP+ GP+G R+G I GQ +NPT++E+ LS L+LV A
Sbjct: 121 DLENDPDILAMVAASAALTLSGIPFMGPVGAARVGYINGQLKLNPTIEEMKLSVLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE + + H ++ IRLAE+A K ++ +++
Sbjct: 181 GTSDAVLMVESEAQELSEDVMLGAVMTGHRGFQPVIDAIIRLAERAAKDPRDLN---VAD 237
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE--SLQVLPKA 351
++ + A A E K ER A+D + V AL E E S + + +A
Sbjct: 238 KSEVTAAVAAIAEAELRTAYKLTVKQERYAAVDAVKAKVFAALLPEGGEAKFSKEHVAEA 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ +GVR+DGR + VRPI E G LP HGS+LF+RG+TQ L TL
Sbjct: 298 FHDLQAKVVRWNILDDGVRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL++ AG+++GL+ E
Sbjct: 418 AAAEFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILE----- 472
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A G
Sbjct: 473 GE--RFAVLSDILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALAQARDG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + ++ R + +PR+ TLK D +R +IG G + R+I E+TG ++++
Sbjct: 531 RLHILGEMAKALTTSRAELGEFAPRIETLKIATDKIREVIGTGGKVIREIVEKTGAKVNI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V + + + ++ + + I + EVG IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKVASSDANSIKAAINWIKS-IASDPEVGQIYEGTVVKTADFGAFVNFFGAKDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+H+S+L+ + V++ +DVV G ++ ++ +G D RG ++LS++ V + D+
Sbjct: 650 VHISQLAKQRVNKTTDVVKEGDKVKVKLLGFDDRGKVRLSMRVVDQQTGEDL 701
>gi|449309805|ref|YP_007442161.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
SP291]
gi|187610329|sp|A7MIN6.2|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|449099838|gb|AGE87872.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
SP291]
Length = 711
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/708 (42%), Positives = 449/708 (63%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
++YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V LAE+ + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 ALNARVKALAESRLSDAYRITD----KQERYSQIDAIKADVIAALQAEQAEGDALDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 GDILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 474 E-----GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 693
>gi|386080901|ref|YP_005994426.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
PA13]
gi|354990082|gb|AER34206.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
PA13]
Length = 709
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 299/711 (42%), Positives = 447/711 (62%), Gaps = 17/711 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + +E L +AGK + +++ +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANT 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAE I + TD K ER + I + AL E + +
Sbjct: 241 ALISRVAALAETRISDAYRITD----KQERYTQVGVIKDETIAALLAEDESLDAAEIGDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 VHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 KAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 474 ----KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K ++D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +PEA
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATETKPEA 699
>gi|395232729|ref|ZP_10410978.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. Ag1]
gi|394732810|gb|EJF32456.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. Ag1]
Length = 709
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 440/700 (62%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVHPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTAEELKTSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L +AGK + +++ ++E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIKEINALVAEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+V+ LAE+ + + K ER +D I DV L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYR--ITEKQERYAQVDVIKADVIATLTAEDESLDAAELSDILH 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R RI+A +R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 AIEKNVVRSRILAGELRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ARDAQTLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I APR +PR+ T+K + D ++ +IG GA+ R + EETG I +
Sbjct: 532 HILGVMEQAIDAPRGDISEFAPRIHTIKINPDKIKDVIGKGGAVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGDKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|354599173|ref|ZP_09017190.1| Polyribonucleotide nucleotidyltransferase [Brenneria sp. EniD312]
gi|353677108|gb|EHD23141.1| Polyribonucleotide nucleotidyltransferase [Brenneria sp. EniD312]
Length = 706
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/700 (42%), Positives = 442/700 (63%), Gaps = 12/700 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ +D+T V TV +K + F PLTV+YQE+
Sbjct: 7 KFQYGQHTVTLETGMMARQATAAVMVSIDDTAVFVTVVGAKQAKPGQGFFPLTVNYQERT 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + PD
Sbjct: 67 YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+GGPIG R+G + Q+++NPT DEL S L+LV A T L
Sbjct: 127 IVAMIGASAALSLSGIPFGGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGTEGAVL 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L +AGK K E+ ++ ++V
Sbjct: 187 MVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWEWHAPEVNASLQQRVE 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
L+EA + + K ER +D I DV AL E + + + +V K V+
Sbjct: 247 ALSEARLGDAYR--ITEKQERYAQVDAIKADVAAALLAEDETLDAGEIQDILGSVEKNVV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 305 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P N+FPYTV
Sbjct: 365 DELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTV 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E ++ +L
Sbjct: 425 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGG-------NFVVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 478 SDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 538 QAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 598 STDGEKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
V +V+D + +GQ++ ++ + D +G ++LS+K + +P+
Sbjct: 657 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQPQ 696
>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase [Yersinia pseudotuberculosis IP 32953]
gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis PB1/+]
gi|81640532|sp|Q66F56.1|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704836|sp|B2K2Q9.1|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 32953]
gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
Length = 704
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/702 (42%), Positives = 445/702 (63%), Gaps = 13/702 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
V +V+D + +GQ + ++ + D +G I+LS+K A +P EA
Sbjct: 658 RVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTPDAEA 699
>gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E110019]
gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E110019]
Length = 711
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L +KAGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 706
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/700 (42%), Positives = 442/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG+ R+G + Q+++NPTMDEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L +AGK K E+ ++
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER +D I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NVEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
BAA-895]
gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
Length = 722
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 450/708 (63%), Gaps = 22/708 (3%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFL 110
G +L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF
Sbjct: 9 GIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFF 68
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V
Sbjct: 69 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATV 128
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+L
Sbjct: 129 VSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 188
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T LM++ +A +SE + + H + ++ L ++AGK + +++
Sbjct: 189 VVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEA 248
Query: 291 ISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESL 345
++E +V+ LAEA + + TD K ER +D I + AL +E DE L
Sbjct: 249 VNEALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIAALVAEDETLDENEL 304
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 305 GEILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 361
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 362 LVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 421
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 422 VLAVMPEMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 481
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D ++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L
Sbjct: 482 EGD-------NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 534
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EET
Sbjct: 535 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 594
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 595 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 653
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 654 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 701
>gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
gi|422803970|ref|ZP_16852402.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
B253]
gi|432776249|ref|ZP_20010512.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE54]
gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
B253]
gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
gi|431316416|gb|ELG04226.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE54]
Length = 721
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/708 (42%), Positives = 448/708 (63%), Gaps = 22/708 (3%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFL 110
G +L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF
Sbjct: 8 GITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFF 67
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V
Sbjct: 68 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATV 127
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+L
Sbjct: 128 VSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 187
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T LM++ +A +SE + + H + ++ L ++AGK + +++
Sbjct: 188 VVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP 247
Query: 291 ISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESL 345
++E +V+ LAEA + + TD K ER +D I + L +E DE L
Sbjct: 248 VNEALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENEL 303
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 304 GEILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 360
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 361 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 420
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 421 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 480
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L
Sbjct: 481 EGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 533
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EET
Sbjct: 534 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 593
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV
Sbjct: 594 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIG 652
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 653 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 700
>gi|385870317|gb|AFI88837.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium sp.
SCC3193]
Length = 706
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/700 (41%), Positives = 443/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE + + H + +E L +AGK K E+ ++
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER ++ I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Antiqua]
gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
Length = 731
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 447/708 (63%), Gaps = 13/708 (1%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFL 110
GT +L +F+ G +T+ETG +AR A AV++ MD+T V TV K + F
Sbjct: 24 GTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFF 83
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V
Sbjct: 84 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATV 143
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+L
Sbjct: 144 VSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDL 203
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T LM++ +A +SE+ + + H + +E L +AGK K +++
Sbjct: 204 VVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEP 263
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
++E +V+ LAEA + + K ER +D I DV +AL + D +
Sbjct: 264 VNEALHARVAELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQD 321
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ +V K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 322 ILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTAT 381
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+
Sbjct: 382 LGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVM 441
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 442 PSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-- 499
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
++ +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 500 -----NFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKG 554
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL ME+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I
Sbjct: 555 ARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIE 614
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++G
Sbjct: 615 IEDDGTIKIAATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEG 673
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
L+H+S+++ + V +V+D + +GQ + ++ + D +G I+LS+K A +P
Sbjct: 674 LVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTP 721
>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrodiazotrophum]
Length = 709
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/697 (42%), Positives = 438/697 (62%), Gaps = 18/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E +G + + +ETG++AR A+GA VL ++ T +++T ++K +V+ DFLPLTVDYQE
Sbjct: 7 EVAVGGKTVRIETGRMARQADGAAVLWVEGTVIIATAVAAK--TVKPGTDFLPLTVDYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP + +REG P ERE+L R++DRP+RPLFP GFY++ QV+ASV+S+D
Sbjct: 65 RAYAAGKIPGGFFKREGKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIASVVSADRSGL 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
D+MA A S AL +SDIP+ P+G +R+G + GQF++NP ++ S L+LV A T +
Sbjct: 125 TDVMAVVAASTALTISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSSLDLVVAGTADA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A E+SE+ +R AH + Q L +K GK K+ + + +EK
Sbjct: 185 IMMVEGKADEVSEELFLEAIRTAHAACQPIIAAQRELQKKIGKSKRALPQVPVRPELMEK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV--LPKAVDTVR 356
+ + + + K R E +I ++ K L E + +Q +
Sbjct: 245 IRSGGREPLSGILV--VSDKKVREEKTSEIRSNLAKELFPEGFADPMQEKEFSNGFHELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+ ++R ++ G+R DGR E+RPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 RELLRAMVLDRGIRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDD 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
QR++SL G KRFMLHY+FP F + EV G RRE+GHG LAE+AL+ VLP ++DF
Sbjct: 363 EQRIDSLEGESHKRFMLHYNFPAFSVGEVKPMRGPGRREIGHGNLAERALIPVLPSKDDF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY++R+ S+++ S+GSTSMATVCGG++A+MDAGIP++ VAG+++GL+ E D
Sbjct: 423 PYSIRLVSDILESNGSTSMATVCGGTLAMMDAGIPIKAPVAGIAMGLIKEGD-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
IL+DILG+EDHLGDMDFK+ GT IGVTA+Q+DIK GI L+I+ + LE A GR+ I+
Sbjct: 476 IAILSDILGIEDHLGDMDFKVTGTDIGVTAVQMDIKIKGITLEIMKKALEQARVGRIHIM 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GT 655
M+ + + R+Q +PR+ T++ D +R +IGP G + R I E TG +I + D G
Sbjct: 536 GKMKEALPSVRSQMSPYAPRIMTIQIKQDKIREVIGPGGKMIRSITERTGAKIEIEDSGV 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + +K +E + I+ E EVG IY G V +V EYGAFVE G GL HVS+
Sbjct: 596 IHVASADEEAAKKAIEIIHQIVA-EAEVGKIYLGKVKTVAEYGAFVEIMPGTTGLCHVSQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
L V +V+DVV+ G ++ ++ + D +G I+LS K
Sbjct: 655 LEPRRVEKVTDVVNEGDEIVVKVLEVDRQGKIRLSRK 691
>gi|187610338|sp|A8AQ53.2|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 449/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + AL +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIAALVAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPEMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
Ueda107]
gi|226702631|sp|B3PIA0.1|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
Ueda107]
Length = 710
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/701 (43%), Positives = 437/701 (62%), Gaps = 25/701 (3%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEK 119
++F+ G++ +TLETG+IAR A GAV++ + E VL TV +K S +DF PL+V YQEK
Sbjct: 6 KKFQYGNQTVTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +V+S+D KQDP
Sbjct: 66 AYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTDKKQDP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREK 238
DI A TSAAL +S IP+ GPIG R+G G+ +I+NP+ +L S+L++V A T++
Sbjct: 126 DIAAMIGTSAALAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSELDMVVAGTKDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+ E + + H E ++ LA AGK + +++ + E T K
Sbjct: 186 VLMVESEAKELPEDIMLGAVLYGHQEMQAVIQACAELARDAGKARWDWQ--PVPENTELK 243
Query: 299 VSNLAEAHIEAVF---TDPSYSKFERGEALDKIGQDVKKALEEECDEES---LQVLPKAV 352
+ I+A F +Y ++ E +++G+ +A+ + EES +
Sbjct: 244 TA------IKAAFGVAIGDAYRITDKAERYNRLGELRSEAVAQFATEESGISADAVKSLF 297
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
T+ ++R RI+A R+DGR VRPI + G LP HGS+LF+RG+TQ L TLG
Sbjct: 298 GTLEYNIVRSRIVANEPRIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLG 357
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++ L G + F+LHY+FPP+ + E G+ RRE+GHG LA++ + AVLP
Sbjct: 358 NARDVQIIDQLEGEKKEAFLLHYNFPPYSVGECGRMGSTGRREIGHGRLAKRGVQAVLPK 417
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E +
Sbjct: 418 AESFPYTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDN---- 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE A R
Sbjct: 474 ---GFAVLTDILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAAR 530
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M + +S RT N+PR T+K D +R +IG GA R I EET I +
Sbjct: 531 LHILGEMNKVLSQSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETNSSIDID 590
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ V A + ++ L ++ I+ E E+G IY+G V + ++GAFV F G+ GL+
Sbjct: 591 DDGTVKVYADDNEALQAALNRIGAIVA-EAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLV 649
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
H+S+++ E V+ VSD + GQ + ++C+ D RG IKLS+K
Sbjct: 650 HISQIADERVNNVSDYLKEGQVVKVKCLDVDQRGRIKLSIK 690
>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
ICC168]
gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
ICC168]
Length = 734
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/708 (41%), Positives = 448/708 (63%), Gaps = 16/708 (2%)
Query: 49 SVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVR 107
SV +L +F+ G +TLETG +AR A AV++ MD+T V TV K +
Sbjct: 18 SVKEIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ 77
Query: 108 DFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVM 167
DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+
Sbjct: 78 DFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVI 137
Query: 168 ASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD 227
A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S
Sbjct: 138 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK 197
Query: 228 LNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK 287
L+LV A T LM++ +A +SE + + H + ++ L ++AGK + +++
Sbjct: 198 LDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQ 257
Query: 288 LSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
++E +V+ LAE+ + + TD K ER +D I + AL E +
Sbjct: 258 PEAVNEALNARVAALAESRLSDAYRITD----KQERYAQVDAIKSETIDALLAEDETLDA 313
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 314 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 373
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 374 LVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 433
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 434 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 493
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D ++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L
Sbjct: 494 EGD-------NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 546
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EET
Sbjct: 547 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 606
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 607 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 665
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 666 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 713
>gi|334140673|ref|YP_004533875.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp.
PP1Y]
gi|333938699|emb|CCA92057.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp.
PP1Y]
Length = 761
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/701 (42%), Positives = 446/701 (63%), Gaps = 26/701 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 MEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +RE E+E L R+IDRP+RPLFP GFY+E+ +A VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINCIAQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD--LNLVYACTRE 237
D++A A SAAL +S +P+ GPIG R+G + GQ+ +NP E +L+D L+LV A T +
Sbjct: 127 DVVAMIAASAALTISGVPFMGPIGACRVGFVDGQYTLNPKQ-EAALADGRLDLVVAATGD 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E++E+++ + AH E K + I LAE+A K+ E LS +
Sbjct: 186 AVMMVESEAKELTEEEMLGAVMFAHDECKKVVNLIIDLAEQAAKEPWEIDLSDNTADIKA 245
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
K+ + + A + TD S R AL+ K+A + + ++ V K + V
Sbjct: 246 KLKEVVGKDVAAAYKLTDKSA----RSNALNAARAKAKEAFAD-AEPQTQMVAIKTMKKV 300
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R I+ +G R+DGR+LD+VRPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 301 EAEIVRGAILKDGQRIDGRKLDQVRPIESMVGFLPRTHGSALFTRGETQTICTTTLGTKD 360
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
Q ++ L G FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + D
Sbjct: 361 SEQMIDGLEGLSYSAFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKED 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV S+V S+GS+SMATVCGG +++MDAG+P++ V+G+++GL+ E D
Sbjct: 421 FPYTIRVLSDVTESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGD------- 473
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
D+ +L+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I+ + LE A GR I
Sbjct: 474 DFAVLSDILGDEDHLGDMDFKVAGTENGITTMQMDIKIAGITKEIMGKALEQAKAGRAHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGT 655
L M + + + RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 534 LGEMTKALGSARTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDE- 592
Query: 656 LTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
V+ + S ++++ ++I+G E EVG IY G V ++ ++GAFV F GG+ GL+HV
Sbjct: 593 -GVIKISSSDLDQIEAAKNWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHV 651
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 652 SEMKNERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVV 692
>gi|378768795|ref|YP_005197269.1| polynucleotide phosphorylase/polyadenylase [Pantoea ananatis LMG
5342]
gi|386018181|ref|YP_005936483.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
AJ13355]
gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
AJ13355]
gi|365188282|emb|CCF11232.1| polynucleotide phosphorylase/polyadenylase [Pantoea ananatis LMG
5342]
Length = 715
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/711 (42%), Positives = 447/711 (62%), Gaps = 17/711 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 7 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 66
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 67 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSV 126
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 127 NPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 186
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + +E L +AGK + +++ +
Sbjct: 187 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANT 246
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAE I + TD K ER + I + AL E + +
Sbjct: 247 ALISRVAALAETRISDAYRITD----KQERYTQVGVIKDETIAALLAEDESLDAAEIGDI 302
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 303 VHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 362
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 363 GTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 422
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 423 KAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDD--- 479
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 480 ----KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGA 535
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K ++D ++ +IG G++ R + EETG I +
Sbjct: 536 RLHILGVMEQAISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEI 595
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 596 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVAIGGGKEGL 654
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +PEA
Sbjct: 655 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATETKPEA 705
>gi|421081058|ref|ZP_15541972.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
CFBP 3304]
gi|401704068|gb|EJS94277.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
CFBP 3304]
Length = 706
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 442/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG+ R+G + Q+++NPTMDEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L +AGK K E+ ++
Sbjct: 181 GTEGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIQNINSLVAEAGKPKWEWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER ++ I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVNVIKSDVVAALQAEDETLNAGDIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NVEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMELAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 706
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 442/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG+ R+G + Q+++NPTMDEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L +AGK K ++ ++
Sbjct: 181 GTEGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWDWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER +D I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NVEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
Length = 709
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 435/703 (61%), Gaps = 15/703 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+EE E G R +TLETG+IAR A+GAV+ ET VL+TV + D +DF PLT
Sbjct: 1 MFDIFREEVEWGGRKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P ERE LV R+IDRPIRPLF GF +E QV+ +VLS
Sbjct: 61 VNYQEKAYAAGKIPGGYFKREGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL +S +P+ GPI R+G G++I+NPT D++ SDL+LV A
Sbjct: 121 DMENDPDIVAMVAASAALTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASDLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE + + ++ I LAE+A K+ + +
Sbjct: 181 GTVDAVLMVESEAKELSEDIMLGAVVFGQQGYKPVIDAIIGLAEQAAKEP--WTIPDAKN 238
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAV 352
+ KV L E ++ F K ER + + E + +A
Sbjct: 239 EFESKVKKLVEKDLKKAFQIAG--KQERQTKVAEAKAKAIAEFVSAESTAGEKNKVAEAF 296
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K V+R I+ G R+DGR L VRPI + G +P HGSSLF+RG+TQ L TLG
Sbjct: 297 KEIEKHVVRTSILKTGKRIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLG 356
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++SL G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ ++P
Sbjct: 357 TGEDEQWIDSLEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMMPK 416
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ FPYTVRV SE+ S+GS+SMA+VCG S++LMDAG+P++ VAG+++GL+ E +
Sbjct: 417 SDTFPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAE---- 472
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+L+DI+G EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ LE AH+GR
Sbjct: 473 ---GVAVLSDIIGDEDHLGDMDFKVAGSANGVTALQMDIKITGITTEIMKIALEQAHEGR 529
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M + ++A R + +PR+ T+ D +R +IG G++ R I EE+G +I +S
Sbjct: 530 LHILGEMSKALNAARGELGEFAPRIETITIPTDKIREVIGSGGSVIRSIVEESGAKIDIS 589
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A N S ++ + ++ I E EVG IYKG V + E+GAFV F G + GL+
Sbjct: 590 DDGTVKIAAANLSSIQDAINRIKS-IASEPEVGVIYKGKVVKIVEFGAFVNFFGSRDGLV 648
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+S+++ + S+VV GQ++ ++C+G D RG ++L++K +
Sbjct: 649 HISQMAERRLKHASEVVKDGQEVYVKCLGFDERGKVRLTMKGI 691
>gi|432766571|ref|ZP_20000987.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE48]
gi|431308110|gb|ELF96398.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE48]
Length = 711
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K + +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKLGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|424862812|ref|ZP_18286725.1| polyribonucleotide nucleotidyltransferase [SAR86 cluster bacterium
SAR86A]
gi|400757433|gb|EJP71644.1| polyribonucleotide nucleotidyltransferase [SAR86 cluster bacterium
SAR86A]
Length = 698
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 448/708 (63%), Gaps = 19/708 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
LE+ EF+ G + + +ET KIAR A AVV+ + + VL+TV + K D +DF PL V
Sbjct: 6 LESTSVEFQYGKQTVKIETNKIARQATAAVVVTIGDLVVLTTVVAKKEADPAKDFFPLAV 65
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
YQEK +A G IP + +RE P ERE L R+IDRPIRP+FP F +E+QV +V+SSD
Sbjct: 66 FYQEKFYATGRIPGGFFKREARPTERETLTSRLIDRPIRPMFPDHFTNEIQVFCTVMSSD 125
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
KQ+PDI + SAAL +S +P+ GP+G R+G I G++++NP+ +EL+ S L++V A
Sbjct: 126 KKQNPDIASMIGASAALTISGVPFDGPMGAARVGFIDGEYVLNPSFEELNDSYLDMVVAG 185
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T E LM++ +A+E++E + + H E + L +K GK+ + + + E+
Sbjct: 186 TDEAVLMVESEAKELNEDLMLGAVLFGHQEMKAVITACNELKQKTGKEA--WNIESVKEE 243
Query: 295 T--LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+++ + + IE F +K ER EAL +I +K+ EE DE + L
Sbjct: 244 NNYYDELQSNHKDEIENAF--KISNKAERNEALKEIRDKIKENYEE-LDELDMGKLMSEF 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K ++R I+ R+DGR LD VRPI+ E+ LP HGS+LF+RG+TQ + TLG
Sbjct: 301 KKLEKDIVRGNILNNQPRIDGRDLDTVRPIFVETNILPGAHGSALFTRGETQAIVAATLG 360
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ +AQR+ES+ G + FMLHY+FP + + E+G +G RRE+GHG LA++A+ AVLP
Sbjct: 361 SSRDAQRIESIEGEDSDNFMLHYNFPAYSVGEIGMPMGPKRREIGHGNLAKRAIKAVLPD 420
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
++F YT+RV SE+ S+GS+SMA+VCG S++LMDAG+PL VAG+++GL+ E D
Sbjct: 421 SDEFGYTMRVVSEITESNGSSSMASVCGTSLSLMDAGVPLTSPVAGIAMGLIKEGD---- 476
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
D+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK +GI I+ L A R
Sbjct: 477 ---DFAVLTDILGDEDHLGDMDFKVAGTESGITALQMDIKISGINESIMETALTKAKVAR 533
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + IS P+ + N+P + T D D ++ +IG GA+ + ++E+TG + +S
Sbjct: 534 DHILGIMNKVISKPKELSE-NAPAMKTFMVDKDKIKEIIGKGGAVIKSMQEKTGATVDIS 592
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DG ++V +N+S M++ L ++ I+ E E+ +YKG V + E+GAFV G+ GLL
Sbjct: 593 DDGVVSVFGQNQSSMKECLAIIEGIL-EEPELNKVYKGSVVKIVEFGAFVNILPGKDGLL 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
H+SE+S E V+DV+ GQ++ ++ IG D RG +KLS+KA++ E
Sbjct: 652 HISEISEERTENVNDVLEEGQEVEVKLIGFD-RGKMKLSMKALADNNE 698
>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 715
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTNKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>gi|422007196|ref|ZP_16354182.1| polynucleotide phosphorylase/polyadenylase [Providencia rettgeri
Dmel1]
gi|414097086|gb|EKT58741.1| polynucleotide phosphorylase/polyadenylase [Providencia rettgeri
Dmel1]
Length = 707
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/700 (41%), Positives = 452/700 (64%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+L +F+ G +++ETG IAR A+ AV++ MD+T V T V K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GFY+E+Q++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SA L LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE+ + + H + ++ L ++AGK+K +++ +++
Sbjct: 181 GTDNAVLMVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V+ LAE+ + + K ER +D I ++V L E + + + +
Sbjct: 241 ALHDRVAQLAESRMGDAYR--ITEKQERYAQVDLIKEEVTAVLVAEDENVDVSEVADILA 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K+V+R R+I R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SLEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDH 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 419 ADFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGN----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --DFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I+ PR + +PR+ T+K ++D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGTMEQAINGPREEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + ++ + +++ I E+EVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGLKAKEAIRRIEDITA-EVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
WPP163]
gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
WPP163]
Length = 706
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/700 (41%), Positives = 443/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE + + H + +E L +AGK K E+ ++
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNI 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER ++ I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase [Yersinia pestis KIM10+]
gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase [Yersinia pestis biovar Microtus str.
91001]
gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM10+]
gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
Length = 737
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 447/708 (63%), Gaps = 13/708 (1%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFL 110
GT +L +F+ G +T+ETG +AR A AV++ MD+T V TV K + F
Sbjct: 30 GTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFF 89
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V
Sbjct: 90 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATV 149
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+L
Sbjct: 150 VSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDL 209
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T LM++ +A +SE+ + + H + +E L +AGK K +++
Sbjct: 210 VVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEP 269
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
++E +V+ LAEA + + K ER +D I DV +AL + D +
Sbjct: 270 VNEALHARVAELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQD 327
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ +V K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 328 ILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTAT 387
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+
Sbjct: 388 LGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVM 447
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 448 PSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-- 505
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
++ +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 506 -----NFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKG 560
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL ME+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I
Sbjct: 561 ARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIE 620
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++G
Sbjct: 621 IEDDGTIKIAATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEG 679
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
L+H+S+++ + V +V+D + +GQ + ++ + D +G I+LS+K A +P
Sbjct: 680 LVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTP 727
>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 721
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/711 (41%), Positives = 446/711 (62%), Gaps = 18/711 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GD 104
PS G + L +F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + L E D
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIDQLTAEDDT 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 700
>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
1131]
gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
1131]
Length = 707
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 291/711 (40%), Positives = 455/711 (63%), Gaps = 12/711 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+L +F+ G +++ETG IAR A+ AV++ MD+T V T V K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GFY+E+Q++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SA L LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE+ + + H + ++ L ++AGK+K +++ +++
Sbjct: 181 GTDNAVLMVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V+ LAE+ + + K ER +D I ++V L E + + + +
Sbjct: 241 ALHDRVAQLAESRMGDAYR--ITEKQERYAQVDLIKEEVTAVLVAEDENVDVSEVTDILA 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K+V+R R+I R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SLEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDH 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE
Sbjct: 419 ADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --DFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I+ PR + +PR+ T++ + D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGTMEQAINGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + ++ + +++ I E+EVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGIKAKEAIRRIEDITA-EVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K EA +
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMKEAVATEEASAQ 701
>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
nodulans ORS 2060]
gi|254782728|sp|B8IGX3.1|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
Length = 725
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/708 (43%), Positives = 445/708 (62%), Gaps = 17/708 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK+AR A+GAVV ET VL+TV S K DFLPLTV+YQE
Sbjct: 6 REELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ A SAAL LS +P+ GPIG R+G + Q+ +NPT+ E+ S L+LV A T
Sbjct: 126 PDIVSMVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVAGTEAA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+ E + + H +E IRLAEKA K+ ++++ + +SE +EK
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLSE--VEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ--VLPKAVDTV 355
V + EA + + K ER A+D + V AL E E + + A V
Sbjct: 244 AVLEIGEADLREAYK--KTVKQERYAAVDAVKAKVMAALAPEEGEAKFEPETVKAAFKEV 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+ +V+R I+ G R+DGR + VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 QAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGD 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP ++
Sbjct: 362 DEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAAHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E GE
Sbjct: 422 FPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILE-----GE-- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A GR I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M + ++A R + ++PR+ T++ D +R +IG G + R+I E+TG +I + D G
Sbjct: 535 LGEMAKALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + ++ + I+ E E G IY G V E+GAF+ F G + GL+H+S
Sbjct: 595 VIKIASSDAKAIKAAYNWIRSIVA-EPEAGMIYDGTVVKTMEFGAFINFFGAKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
EL+ + V++V+DVV G ++ ++ +GQD RG I+LS+K V + D+
Sbjct: 654 ELAPQRVAKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDI 701
>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 715
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVVAQLTTQDETISEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
Length = 711
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/702 (42%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E D L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDDTLDENELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|387771787|ref|ZP_10127944.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parahaemolyticus HK385]
gi|386908172|gb|EIJ72870.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parahaemolyticus HK385]
Length = 707
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 445/708 (62%), Gaps = 13/708 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E LV R+IDRP+RPLFP GF++E+QV+A+V+S + + PD
Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A SAAL LS +P+ GPIG R+G I QF++NPT E LS L+LV A T + L
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKLSRLDLVVAGTDKAVL 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+ + + + H + +E ++AGK + ++ + + KV
Sbjct: 187 MVESEADILTEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE+ I + K R E +D I +V L E + S + + + +++
Sbjct: 247 ALAESRIGDAYR--ITEKQARYEQIDTIKAEVIATLTVEDETLSEGAIIDIITALESQIV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ +
Sbjct: 305 RSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQII 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY V
Sbjct: 365 DELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYVV 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +L
Sbjct: 425 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL+ ME
Sbjct: 478 SDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILNVME 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 538 QAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S+++ E
Sbjct: 598 ATDNNAAKTVMARIEEIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVE 767
V RV+D +SVGQ++ ++ + D + I+L++K V+ EA+V VE
Sbjct: 657 RVERVADYLSVGQEVMVKVVEIDRQNRIRLTMKDVN-NAEAEVAIQVE 703
>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
gi|259534126|sp|C6E2P5.1|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
Length = 696
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/692 (43%), Positives = 429/692 (61%), Gaps = 15/692 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
E + IT+ETGKIA+ A+GAV++ +T VL T + K + F PLTV+YQEK +A
Sbjct: 8 ECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYA 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP ++ +REG P + E L R+IDRPIRPLFP GF ++ QVMA+V+S+D DP I+
Sbjct: 68 GGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDNDPAIL 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
+ SAALM+SD P+ GPI +++GR+ G FI NPT +EL SDL +V A ++E LM+
Sbjct: 128 SMIGASAALMVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLEIVIAASQEAILMV 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+SE DL + H L Q+ LA+K G K+ +++E+ +V+ L
Sbjct: 188 EGSAAEVSENDLLEAIFFGHAAVQPILAAQLELAKKVGTPKRVILAPVVNEELKARVAAL 247
Query: 303 A-EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
A E +AV +K ER A+D I + AL E E S + + ++ + ++R
Sbjct: 248 AKEGMKQAVRIK---TKVERHLAIDAITAETVAALAAEF-EGSEKEVKGFIEDLEYDLVR 303
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ II +G R+DGR +R I E LP HGS+LF+RG+TQ + TLG + QR++
Sbjct: 304 EHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRID 363
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
SL G K+FMLHY+FPP+ + E R+ RRE+GHG LAE+AL VLP +DFPYT+R
Sbjct: 364 SLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIR 423
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ S++ S+GS+SMATVCGGS+++MDAGIP++ VAG+++GL+ E D D+ IL+
Sbjct: 424 IVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGD-------DFAILS 476
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L A GR+ IL M +
Sbjct: 477 DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAK 536
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVA 660
I+A R +PR+ T+ D +R +IG G R + E TG I + D G + + +
Sbjct: 537 TIAASRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIAS 596
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + ++ + + E E G +Y G V + E+GAFVE G GL+HVSEL E
Sbjct: 597 TNKEACDLAIKMIRNLTA-EAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTER 655
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V VSD++ G ++ ++CIG D +G IKLS K
Sbjct: 656 VKNVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687
>gi|432535510|ref|ZP_19772474.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE234]
gi|431058590|gb|ELD67983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE234]
Length = 711
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|187470959|sp|A3MZU3.1|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096735|sp|B3GXC1.2|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 715
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>gi|253686990|ref|YP_003016180.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259534139|sp|C6DKK7.1|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 706
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/709 (41%), Positives = 447/709 (63%), Gaps = 13/709 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK K ++ ++
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER +D I DV+ AL E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVDVIKADVEAALLAEDETLNAGEIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NVEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 SEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P EA
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPTQEA 699
>gi|432865078|ref|ZP_20088326.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE146]
gi|431402835|gb|ELG86140.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE146]
Length = 711
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|226702591|sp|B0BUD5.1|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 715
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>gi|386620779|ref|YP_006140359.1| polynucleotide phosphorylase [Escherichia coli NA114]
gi|424817727|ref|ZP_18242878.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
gi|432399120|ref|ZP_19641895.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE25]
gi|432408245|ref|ZP_19650949.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE28]
gi|432423580|ref|ZP_19666119.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE178]
gi|432501729|ref|ZP_19743481.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE216]
gi|432560442|ref|ZP_19797098.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE49]
gi|432696039|ref|ZP_19931232.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE162]
gi|432707516|ref|ZP_19942593.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE6]
gi|432724638|ref|ZP_19959552.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE17]
gi|432729221|ref|ZP_19964096.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE18]
gi|432742908|ref|ZP_19977623.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE23]
gi|432922187|ref|ZP_20125151.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE173]
gi|432928986|ref|ZP_20130087.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE175]
gi|432982618|ref|ZP_20171389.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE211]
gi|432992272|ref|ZP_20180931.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE217]
gi|433097974|ref|ZP_20284150.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE139]
gi|433107422|ref|ZP_20293387.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE148]
gi|433112404|ref|ZP_20298260.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE150]
gi|257096720|sp|B7LR33.2|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
gi|333971280|gb|AEG38085.1| Polynucleotide phosphorylase [Escherichia coli NA114]
gi|430913725|gb|ELC34846.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE25]
gi|430928246|gb|ELC48797.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE28]
gi|430942889|gb|ELC63020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE178]
gi|431026646|gb|ELD39717.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE216]
gi|431089154|gb|ELD94978.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE49]
gi|431232114|gb|ELF27790.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE162]
gi|431255944|gb|ELF49022.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE6]
gi|431263572|gb|ELF55558.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE17]
gi|431271817|gb|ELF62936.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE18]
gi|431282066|gb|ELF72964.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE23]
gi|431437210|gb|ELH18723.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE173]
gi|431442109|gb|ELH23216.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE175]
gi|431489865|gb|ELH69490.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE211]
gi|431492541|gb|ELH72142.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE217]
gi|431613563|gb|ELI82759.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE139]
gi|431625020|gb|ELI93614.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE148]
gi|431626274|gb|ELI94826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE150]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter
salexigens DSM 3043]
gi|122990389|sp|Q1QSZ4.1|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter
salexigens DSM 3043]
Length = 707
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/713 (43%), Positives = 448/713 (62%), Gaps = 30/713 (4%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MD+T VL TV + K + + F PL+V YQE
Sbjct: 5 KKTFQYGHSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 65 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHD 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL +S +P+ GPIG R+G + + +NPT++EL S+LN+V A T +
Sbjct: 125 PDIAAMLGTSAALAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSELNMVVAGTEK 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-----LSMIS 292
LM++ +A+E+ E ++ + H E + LA++AGK + +++ ++ S
Sbjct: 185 AVLMVESEAKELLEDEMLGAVLFGHQEMQAAITAIQALADEAGKPRWDWQPPTDDTTLKS 244
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV----L 348
E + + EA+ TD K R +AL + + ALE EES Q +
Sbjct: 245 ALAAEFEAKVGEAY---RITD----KMARQDALSALKDE---ALERLAGEESGQYAADDV 294
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A ++ KRV+R RII R+DGR VRP+ E G LP HGS++F+RG+TQ +
Sbjct: 295 KGAFASLEKRVVRSRIIQGEPRIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVV 354
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ +ESL G RF+LHY+FPP+ + E G G RRE+GHG LA + + A
Sbjct: 355 ATLGTLRDAQLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQA 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP E DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 415 MLPSEEDFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDED 474
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+ +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ L+ A
Sbjct: 475 -------GFAVLTDILGDEDHLGDMDFKVAGSTAGVTALQMDIKIEGINEEIMETALQQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
H+ RL IL+ M I+ R++ N+P +AT+K D D +R +IG GA RKI ++TG
Sbjct: 528 HEARLHILEQMNTVIAQSRSEVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICDDTGAS 587
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A++++ + ++ V I E E+G +Y+G V + ++GAFV F G
Sbjct: 588 IDLDDDGTVRIYAEDKTAAKAAIDTV-LAITAEPEIGKLYRGTVARITDFGAFVTFMPGT 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
GL+H+S++ E V+ V D +S GQ++ ++ + D R +KLS+K V+ +A
Sbjct: 647 DGLVHISQIVPERVNDVRDYLSEGQEVIVKVLDIDNRNRVKLSIKEVTAEEKA 699
>gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 7 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 66
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 67 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 126
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 127 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 186
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 187 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 246
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 247 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 302
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 303 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 359
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 360 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 419
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 420 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 479
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 480 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 532
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 533 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 592
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 593 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 651
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 652 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 696
>gi|365859653|ref|ZP_09399507.1| polyribonucleotide nucleotidyltransferase [Acetobacteraceae
bacterium AT-5844]
gi|363711846|gb|EHL95553.1| polyribonucleotide nucleotidyltransferase [Acetobacteraceae
bacterium AT-5844]
Length = 743
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 441/708 (62%), Gaps = 19/708 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVD 115
F+++ G + +TLETGKIAR A+GAV+ + +T VL TV ++ SV+ DF PLTV+
Sbjct: 15 FRKDINWGGKTLTLETGKIARQADGAVMARLGDTIVLCTVVGAR--SVKPGQDFFPLTVN 72
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
YQEK +A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+VLS D
Sbjct: 73 YQEKAYAAGKIPGGFFKREGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLSHDM 132
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
+ PDI++ SAAL LS IP+ GP+G R+G I GQ+++NPT++++ S L+LV A T
Sbjct: 133 ENSPDIVSLVGCSAALTLSGIPFFGPVGGARVGYIDGQYVLNPTLEQIKQSKLDLVVAGT 192
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
E LM++ +A E++E+ + + H ++ I LAEKA K+ + L S +T
Sbjct: 193 EEGVLMVESEAHELTEEVMLGAVTFGHAAFQPVIQGIIELAEKAAKEP--WDLPEESAET 250
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
+ LAE + A +Y + + K+ + KKA+ + EE + + +
Sbjct: 251 VALKKKLAE--LGAASIGEAYKETRKLIRHSKV-SEAKKAILAQLSEEEAEAAKGLLKDL 307
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
V+R I+ G+R+DGR VRPI E LP HGS+LF+RG+TQ LC TLG
Sbjct: 308 EADVVRNAILDTGIRIDGRDTKTVRPIVAEVHVLPRAHGSALFTRGETQALCVATLGTGQ 367
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++ L G + FMLHY+FPPF +NE G+ RRE+GHG LA +A+ +LP +
Sbjct: 368 DEQIIDQLAGEYRENFMLHYNFPPFSVNETGRMGSPGRREIGHGKLAWRAIRPLLPEKEK 427
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMATVCG S++LMDAG PL+ AG+++GL+ E +
Sbjct: 428 FPYTMRVVSEITESNGSSSMATVCGTSLSLMDAGAPLKRPCAGIAMGLIK-------EDR 480
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK I +I+ LE A +GRL I
Sbjct: 481 GFAVLSDILGDEDHLGDMDFKVAGSEEGITALQMDIKITSITPEIMKIALEQAKQGRLHI 540
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + +S RT N+P++ + D +R +IG G + R I E TG +I + DG
Sbjct: 541 LGEMAKGLSGARTDVAGNAPKITVINVPKDKIREVIGTGGKVIRDIVETTGTKIDIEDDG 600
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + + + ++++ I E EVG IY G V ++GAFV F G + GL+H+S
Sbjct: 601 TIKIASTSPEATQAAIDRIKGITA-EAEVGSIYNGTVVKTADFGAFVNFLGAKDGLVHIS 659
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
EL++E V++ +D+V+VG ++ ++ IG D RG +KLS++ V AD+
Sbjct: 660 ELANERVNKTADIVNVGDKVKVKVIGFDDRGKVKLSMRVVDQATGADI 707
>gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MG1655]
gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS]
gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BW2952]
gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50]
gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
196-1]
gi|386282272|ref|ZP_10059925.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 4_1_40B]
gi|386594118|ref|YP_006090518.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
gi|386615952|ref|YP_006135618.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
gi|387622828|ref|YP_006130456.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
gi|387823500|ref|YP_003000740.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
phosphorylase and degradosome [Escherichia coli
BL21(DE3)]
gi|404376545|ref|ZP_10981703.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 1_1_43]
gi|417271769|ref|ZP_12059118.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.4168]
gi|417276289|ref|ZP_12063620.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2303]
gi|417290743|ref|ZP_12078024.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B41]
gi|417614770|ref|ZP_12265225.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_EH250]
gi|417619767|ref|ZP_12270175.1| polyribonucleotide nucleotidyltransferase [Escherichia coli G58-1]
gi|417636259|ref|ZP_12286469.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_S1191]
gi|417945997|ref|ZP_12589223.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
XH140A]
gi|417977271|ref|ZP_12618057.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli XH001]
gi|418040936|ref|ZP_12679168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W26]
gi|418956451|ref|ZP_13508376.1| polyribonucleotide nucleotidyltransferase [Escherichia coli J53]
gi|419144240|ref|ZP_13688972.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6A]
gi|419150126|ref|ZP_13694775.1| pnp [Escherichia coli DEC6B]
gi|419155633|ref|ZP_13700190.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6C]
gi|419160987|ref|ZP_13705485.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6D]
gi|419166038|ref|ZP_13710491.1| pnp [Escherichia coli DEC6E]
gi|419176476|ref|ZP_13720288.1| pnp [Escherichia coli DEC7B]
gi|419810592|ref|ZP_14335472.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O32:H37 str. P4]
gi|419939343|ref|ZP_14456138.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 75]
gi|421774866|ref|ZP_16211477.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AD30]
gi|422767339|ref|ZP_16821065.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
gi|422787302|ref|ZP_16840040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
gi|422793207|ref|ZP_16845904.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
gi|422818333|ref|ZP_16866546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M919]
gi|423702668|ref|ZP_17677100.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H730]
gi|425116712|ref|ZP_18518502.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0566]
gi|425274360|ref|ZP_18665758.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW15901]
gi|425284940|ref|ZP_18675970.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW00353]
gi|432366623|ref|ZP_19609741.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE10]
gi|432418691|ref|ZP_19661286.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE44]
gi|432528008|ref|ZP_19765085.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE233]
gi|432565531|ref|ZP_19802095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE51]
gi|432577401|ref|ZP_19813851.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE56]
gi|432628801|ref|ZP_19864771.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE77]
gi|432638374|ref|ZP_19874240.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE81]
gi|432662378|ref|ZP_19898014.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE111]
gi|432686987|ref|ZP_19922278.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE156]
gi|432688442|ref|ZP_19923714.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE161]
gi|432705907|ref|ZP_19941003.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE171]
gi|432738652|ref|ZP_19973404.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE42]
gi|432877160|ref|ZP_20094958.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE154]
gi|432956925|ref|ZP_20148528.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE197]
gi|433049602|ref|ZP_20236940.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE120]
gi|442597233|ref|ZP_21015029.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|450250555|ref|ZP_21901641.1| polyribonucleotide nucleotidyltransferase [Escherichia coli S17]
gi|1172545|sp|P05055.3|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610300|sp|A8A4Y0.1|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096729|sp|B1XGX6.2|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|259534118|sp|C4ZSQ5.1|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MG1655]
gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS]
gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
gi|226839954|gb|EEH71975.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 1_1_43]
gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BW2952]
gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
196-1]
gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
phosphorylase and degradosome [Escherichia coli
BL21(DE3)]
gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
gi|342362314|gb|EGU26435.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
XH140A]
gi|344193082|gb|EGV47166.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli XH001]
gi|345360616|gb|EGW92785.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_EH250]
gi|345372897|gb|EGX04860.1| polyribonucleotide nucleotidyltransferase [Escherichia coli G58-1]
gi|345385977|gb|EGX15814.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_S1191]
gi|377990384|gb|EHV53545.1| pnp [Escherichia coli DEC6B]
gi|377991771|gb|EHV54921.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6A]
gi|377994595|gb|EHV57721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6C]
gi|378005240|gb|EHV68245.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6D]
gi|378007936|gb|EHV70899.1| pnp [Escherichia coli DEC6E]
gi|378030637|gb|EHV93230.1| pnp [Escherichia coli DEC7B]
gi|383476181|gb|EID68128.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W26]
gi|384380245|gb|EIE38111.1| polyribonucleotide nucleotidyltransferase [Escherichia coli J53]
gi|385156576|gb|EIF18572.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O32:H37 str. P4]
gi|385538118|gb|EIF84983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M919]
gi|385710160|gb|EIG47152.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H730]
gi|386120648|gb|EIG69272.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 4_1_40B]
gi|386235469|gb|EII67445.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.4168]
gi|386241014|gb|EII77933.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2303]
gi|386253065|gb|EIJ02755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B41]
gi|388407746|gb|EIL68110.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 75]
gi|408191013|gb|EKI16633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW15901]
gi|408199748|gb|EKI24938.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW00353]
gi|408459943|gb|EKJ83723.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AD30]
gi|408565277|gb|EKK41364.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0566]
gi|430891962|gb|ELC14483.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE10]
gi|430937081|gb|ELC57343.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE44]
gi|431060983|gb|ELD70303.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE233]
gi|431091062|gb|ELD96812.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE51]
gi|431113269|gb|ELE16939.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE56]
gi|431161131|gb|ELE61616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE77]
gi|431169115|gb|ELE69344.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE81]
gi|431197456|gb|ELE96305.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE111]
gi|431219974|gb|ELF17362.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE156]
gi|431236491|gb|ELF31697.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE161]
gi|431241691|gb|ELF36127.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE171]
gi|431280115|gb|ELF71044.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE42]
gi|431418342|gb|ELH00746.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE154]
gi|431465397|gb|ELH45507.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE197]
gi|431562991|gb|ELI36234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE120]
gi|441654393|emb|CCQ00942.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449315991|gb|EMD06116.1| polyribonucleotide nucleotidyltransferase [Escherichia coli S17]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|386812420|ref|ZP_10099645.1| polyribonucleotide nucleotidyltransferase [planctomycete KSU-1]
gi|386404690|dbj|GAB62526.1| polyribonucleotide nucleotidyltransferase [planctomycete KSU-1]
Length = 703
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/701 (42%), Positives = 442/701 (63%), Gaps = 32/701 (4%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 124
IG R++++ETGKIA+ A+GA ++ +T VL+TV ++ + DF PL VDY+EK +A G
Sbjct: 10 IGKRILSIETGKIAKQADGAALIRYGDTIVLTTVVAAGENEDADFFPLIVDYREKTYAAG 69
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
P + +REG P +E+L R+IDRPIRPLFP + +EVQ+M+ VLS+D + DPDI A
Sbjct: 70 KFPGGFFKREGKPTNKEVLTMRLIDRPIRPLFPETYLNEVQIMSMVLSADKENDPDIFAM 129
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
SAAL +S IP+ GP G +R+G + G+F++NPT EL +S ++LV + T E M++
Sbjct: 130 IGASAALSISSIPFHGPTGSVRVGLVDGEFVINPTHSELLMSSIDLVVSGTEEAVTMVES 189
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
++E+ E+ + + H + ++ Q L K K+K+ I+ LE++ +
Sbjct: 190 SSKEVPEEQMVDAIMFGHTFIKEIVQLQKELLSKCRKEKQPIPPLKINMALLEEIK--GK 247
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR----VI 360
+ + + + K ER AL++I + + + E C + + + + +R V+
Sbjct: 248 YYTRILEKNQTPGKQERKLALNEI---LNQIIHEYCTDREDAPTKREIKAIFERIETVVV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +II E R DGR + ++RPI CE G LP HGS+LF+RG+TQ L TLG P + Q++
Sbjct: 305 RDQIIRENKRPDGRGVKDIRPITCEIGILPRTHGSALFTRGETQALVVTTLGTPTDEQKV 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L +K+FML Y+FPPFC+ EV G RRE+GHG LAE+AL AVLPP N FPYTV
Sbjct: 365 DTLEDEYSKKFMLDYNFPPFCVGEVKPLRGPGRREIGHGALAERALEAVLPPPNKFPYTV 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S++ S+GS+SMATVCGG++++MDAGIP+ VAG+++GLV E D D RIL
Sbjct: 425 RVVSDITESNGSSSMATVCGGTLSMMDAGIPIIAPVAGIAMGLVKEGD-------DVRIL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK +GI +++ L A +GRL I+ +
Sbjct: 478 SDILGTEDHLGDMDFKVAGTEKGVTALQMDIKISGITQEVMQSALAQAKEGRLFIIKELI 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I PR +P+L +K + + + +IGP G +KI+EET +I + DGT+ +
Sbjct: 538 KVIEKPRADISVYAPKLVHIKINPEKIGMVIGPGGKNIKKIQEETSAKIEIEDDGTVIIS 597
Query: 660 A-------KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
A K ++ +E++ E E++VG +Y G V S+KEYGAFVE G GL+H
Sbjct: 598 AALTESAQKAKTWIERMTE--------EVQVGKVYTGKVLSLKEYGAFVEIIPGHDGLVH 649
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+SELS V +V DVV VGQ++ ++ IG D + +KLS KA
Sbjct: 650 ISELSDSYVEKVEDVVQVGQEIMIKVIGIDDQKRVKLSRKA 690
>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
bathyomarinum JL354]
Length = 769
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/700 (42%), Positives = 439/700 (62%), Gaps = 21/700 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
E G + +TLETG+IAR A+GAV+ ET VL VT++K +DF PLTV+YQEK
Sbjct: 9 LEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLTVNYQEKFS 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +RE P E+E LV R+IDRP+RPLFP GFY+E+ V+A VLS DG+ +PDI
Sbjct: 69 AAGRIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGETEPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD---LNLVYACTREK 238
+A A SAAL +S +P+ GPI R+G G++ +NPT +L D L+LV A T +
Sbjct: 129 VAMIAASAALTISGVPFMGPIASARVGFRNGEYELNPTQ-SAALDDEGRLDLVVAATNDA 187
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E++E+++ + AH E K + I LAE+A K E
Sbjct: 188 VMMVESEAKELTEEEMLGAVMFAHDECRKVIGAIIELAEQAAKDPWELASGDDHADMKSA 247
Query: 299 VSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTV 355
+ + I + TD S R +AL++ + VK EE D + K V +
Sbjct: 248 IKQMIGDDIAKAYKLTDKSA----RSDALNEAREKVKAHYSSEEFDGQQKMTAIKLVKKL 303
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R I+ +G R+DGR+LDEVRPI G LP HGSSLF+RG+TQ +CT TLG
Sbjct: 304 ESEIVRGAILKDGQRIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKD 363
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
Q ++ L G FMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP D
Sbjct: 364 AEQMIDGLEGLSYNHFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALHPVLPSHED 423
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV S++ S+GS+SMATVCGG +++MDAG+P++ V+G+++GL+ E D
Sbjct: 424 FPYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGD------- 476
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
D+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ + LE A GR I
Sbjct: 477 DFAVLSDILGDEDHLGDMDFKVAGSESGITSLQMDIKVAGITQEIMAKALEQAKAGRAHI 536
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M + + + RT +++PR+ T++ D +R +IG G + R+I ETG ++ + D G
Sbjct: 537 LGEMTKALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEG 596
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + N +E + ++ I+ E EVG IY G V ++ ++GAFV F GG+ GL+HVS
Sbjct: 597 VIKISSSNADEIEAARKWIEGIV-EEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVS 655
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 656 EMKNERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVV 695
>gi|416294212|ref|ZP_11650711.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
796-83]
gi|420327325|ref|ZP_14829070.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
CCH060]
gi|420354715|ref|ZP_14855796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 4444-74]
gi|421684327|ref|ZP_16124115.1| pnp [Shigella flexneri 1485-80]
gi|187611310|sp|Q31W43.2|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
796-83]
gi|391248087|gb|EIQ07331.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
CCH060]
gi|391274984|gb|EIQ33783.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 4444-74]
gi|404336685|gb|EJZ63144.1| pnp [Shigella flexneri 1485-80]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++++LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|417131756|ref|ZP_11976541.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0588]
gi|419927604|ref|ZP_14445338.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 541-1]
gi|423707465|ref|ZP_17681845.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B799]
gi|257096728|sp|B7M072.2|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|385709839|gb|EIG46832.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B799]
gi|386149610|gb|EIH00899.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0588]
gi|388407040|gb|EIL67416.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 541-1]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDENLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2362-75]
gi|417757523|ref|ZP_12405589.1| pnp [Escherichia coli DEC2B]
gi|418998529|ref|ZP_13546114.1| pnp [Escherichia coli DEC1A]
gi|419003897|ref|ZP_13551410.1| pnp [Escherichia coli DEC1B]
gi|419009570|ref|ZP_13556989.1| pnp [Escherichia coli DEC1C]
gi|419015152|ref|ZP_13562493.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC1D]
gi|419020202|ref|ZP_13567502.1| pnp [Escherichia coli DEC1E]
gi|419025663|ref|ZP_13572883.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC2A]
gi|419030795|ref|ZP_13577944.1| pnp [Escherichia coli DEC2C]
gi|419036447|ref|ZP_13583524.1| pnp [Escherichia coli DEC2D]
gi|419041500|ref|ZP_13588519.1| pnp [Escherichia coli DEC2E]
gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2362-75]
gi|377840792|gb|EHU05862.1| pnp [Escherichia coli DEC1A]
gi|377841403|gb|EHU06469.1| pnp [Escherichia coli DEC1C]
gi|377844570|gb|EHU09606.1| pnp [Escherichia coli DEC1B]
gi|377854685|gb|EHU19562.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC1D]
gi|377857885|gb|EHU22733.1| pnp [Escherichia coli DEC1E]
gi|377861351|gb|EHU26171.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC2A]
gi|377871818|gb|EHU36476.1| pnp [Escherichia coli DEC2B]
gi|377874555|gb|EHU39182.1| pnp [Escherichia coli DEC2C]
gi|377876893|gb|EHU41492.1| pnp [Escherichia coli DEC2D]
gi|377887126|gb|EHU51604.1| pnp [Escherichia coli DEC2E]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SMS-3-5]
gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
gi|222157878|ref|YP_002558017.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
3_2_53FAA]
gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
FVEC1412]
gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FVEC1302]
gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
gi|386601192|ref|YP_006102698.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
IHE3034]
gi|386602751|ref|YP_006109051.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
gi|415839226|ref|ZP_11521044.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
RN587/1]
gi|416337224|ref|ZP_11673650.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
WV_060327]
gi|416899485|ref|ZP_11928967.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_7v]
gi|417117588|ref|ZP_11968449.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2741]
gi|417138608|ref|ZP_11982259.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0259]
gi|417281683|ref|ZP_12068983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3003]
gi|417309696|ref|ZP_12096526.1| hypothetical protein PPECC33_30980 [Escherichia coli PCN033]
gi|417588278|ref|ZP_12239042.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_C165-02]
gi|419701998|ref|ZP_14229596.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SCI-07]
gi|419913498|ref|ZP_14431929.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD1]
gi|419919648|ref|ZP_14437792.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD2]
gi|419935091|ref|ZP_14452178.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 576-1]
gi|419946182|ref|ZP_14462599.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HM605]
gi|422332641|ref|ZP_16413654.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
4_1_47FAA]
gi|422749733|ref|ZP_16803644.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
gi|422753892|ref|ZP_16807718.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
gi|422779873|ref|ZP_16832658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10509]
gi|422801112|ref|ZP_16849609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
gi|422827430|ref|ZP_16875604.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B093]
gi|422833484|ref|ZP_16881550.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E101]
gi|422841182|ref|ZP_16889152.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H397]
gi|425279565|ref|ZP_18670793.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
ARS4.2123]
gi|425302035|ref|ZP_18691919.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 07798]
gi|432355172|ref|ZP_19598440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE2]
gi|432359620|ref|ZP_19602834.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE4]
gi|432364417|ref|ZP_19607574.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE5]
gi|432382896|ref|ZP_19625835.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE15]
gi|432388927|ref|ZP_19631807.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE16]
gi|432393757|ref|ZP_19636581.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE21]
gi|432403547|ref|ZP_19646292.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE26]
gi|432413395|ref|ZP_19656050.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE39]
gi|432427808|ref|ZP_19670292.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE181]
gi|432433386|ref|ZP_19675811.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE187]
gi|432437981|ref|ZP_19680365.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE188]
gi|432458294|ref|ZP_19700471.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE201]
gi|432462511|ref|ZP_19704645.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE204]
gi|432472518|ref|ZP_19714556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE206]
gi|432477504|ref|ZP_19719494.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE208]
gi|432490951|ref|ZP_19732815.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE213]
gi|432497287|ref|ZP_19739080.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE214]
gi|432506044|ref|ZP_19747764.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE220]
gi|432515563|ref|ZP_19752779.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE224]
gi|432519366|ref|ZP_19756546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE228]
gi|432525499|ref|ZP_19762618.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE230]
gi|432539524|ref|ZP_19776418.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE235]
gi|432544910|ref|ZP_19781745.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE236]
gi|432550392|ref|ZP_19787152.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE237]
gi|432555236|ref|ZP_19791955.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE47]
gi|432570396|ref|ZP_19806903.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE53]
gi|432575367|ref|ZP_19811841.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE55]
gi|432581635|ref|ZP_19818049.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE57]
gi|432589551|ref|ZP_19825904.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE58]
gi|432594367|ref|ZP_19830680.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE60]
gi|432599419|ref|ZP_19835690.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE62]
gi|432604005|ref|ZP_19840236.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE66]
gi|432609207|ref|ZP_19845389.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE67]
gi|432613177|ref|ZP_19849335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE72]
gi|432618415|ref|ZP_19854520.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE75]
gi|432623532|ref|ZP_19859551.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE76]
gi|432633044|ref|ZP_19868965.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE80]
gi|432642734|ref|ZP_19878560.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE83]
gi|432647845|ref|ZP_19883631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE86]
gi|432652765|ref|ZP_19888511.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE87]
gi|432657408|ref|ZP_19893105.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE93]
gi|432667731|ref|ZP_19903304.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE116]
gi|432700689|ref|ZP_19935834.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE169]
gi|432715018|ref|ZP_19950046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE8]
gi|432720301|ref|ZP_19955266.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE9]
gi|432733924|ref|ZP_19968749.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE45]
gi|432747151|ref|ZP_19981813.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE43]
gi|432756101|ref|ZP_19990646.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE22]
gi|432761010|ref|ZP_19995500.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE46]
gi|432767539|ref|ZP_20001933.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE50]
gi|432780181|ref|ZP_20014402.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE59]
gi|432785139|ref|ZP_20019317.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE63]
gi|432789174|ref|ZP_20023302.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE65]
gi|432794391|ref|ZP_20028473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE78]
gi|432795908|ref|ZP_20029949.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE79]
gi|432816940|ref|ZP_20050701.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE115]
gi|432822609|ref|ZP_20056298.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE118]
gi|432824064|ref|ZP_20057734.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE123]
gi|432840977|ref|ZP_20074437.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE140]
gi|432846215|ref|ZP_20078896.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE141]
gi|432854310|ref|ZP_20082855.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE144]
gi|432870629|ref|ZP_20091086.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE147]
gi|432888472|ref|ZP_20102224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE158]
gi|432890543|ref|ZP_20103475.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE165]
gi|432900396|ref|ZP_20110818.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE192]
gi|432906815|ref|ZP_20115354.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE194]
gi|432914661|ref|ZP_20120077.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE190]
gi|432939794|ref|ZP_20137897.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE183]
gi|432963625|ref|ZP_20153044.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE202]
gi|432973446|ref|ZP_20162292.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE207]
gi|432975374|ref|ZP_20164209.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE209]
gi|432987020|ref|ZP_20175733.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE215]
gi|433001530|ref|ZP_20190049.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE223]
gi|433006753|ref|ZP_20195177.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE227]
gi|433009368|ref|ZP_20197781.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE229]
gi|433020299|ref|ZP_20208465.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE105]
gi|433030083|ref|ZP_20217935.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE109]
gi|433040170|ref|ZP_20227763.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE113]
gi|433054802|ref|ZP_20241969.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE122]
gi|433059654|ref|ZP_20246691.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE124]
gi|433064621|ref|ZP_20251532.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE125]
gi|433069487|ref|ZP_20256262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE128]
gi|433079357|ref|ZP_20265877.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE131]
gi|433084098|ref|ZP_20270546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE133]
gi|433088823|ref|ZP_20275189.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE137]
gi|433102758|ref|ZP_20288831.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE145]
gi|433126737|ref|ZP_20312284.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE160]
gi|433140801|ref|ZP_20326047.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE167]
gi|433145776|ref|ZP_20330910.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE168]
gi|433150806|ref|ZP_20335807.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE174]
gi|433155318|ref|ZP_20340251.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE176]
gi|433160279|ref|ZP_20345106.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE177]
gi|433165159|ref|ZP_20349890.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE179]
gi|433170135|ref|ZP_20354758.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE180]
gi|433179999|ref|ZP_20364385.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE82]
gi|433189977|ref|ZP_20374066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE88]
gi|433204893|ref|ZP_20388645.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE95]
gi|433209296|ref|ZP_20392964.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE97]
gi|433214146|ref|ZP_20397729.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE99]
gi|442605370|ref|ZP_21020202.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli Nissle
1917]
gi|450193269|ref|ZP_21891926.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SEPT362]
gi|187610330|sp|A1AG69.2|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610331|sp|Q0TCU5.2|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610332|sp|Q8FD87.2|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610333|sp|Q1R6H4.2|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702650|sp|B1LFR6.1|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096724|sp|B7MB85.2|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096727|sp|B7N0U9.2|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096730|sp|B7NDF0.2|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
SMS-3-5]
gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
3_2_53FAA]
gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
FVEC1412]
gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
IHE3034]
gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FVEC1302]
gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
WV_060327]
gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
RN587/1]
gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10509]
gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_7v]
gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
gi|338768642|gb|EGP23432.1| hypothetical protein PPECC33_30980 [Escherichia coli PCN033]
gi|345333165|gb|EGW65617.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_C165-02]
gi|371604922|gb|EHN93546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H397]
gi|371606346|gb|EHN94943.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E101]
gi|371613105|gb|EHO01606.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B093]
gi|373246321|gb|EHP65775.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
4_1_47FAA]
gi|380346849|gb|EIA35139.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SCI-07]
gi|386140132|gb|EIG81287.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2741]
gi|386157792|gb|EIH14130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0259]
gi|386246012|gb|EII87742.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3003]
gi|388387013|gb|EIL48642.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD2]
gi|388389156|gb|EIL50692.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD1]
gi|388405427|gb|EIL65857.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 576-1]
gi|388413522|gb|EIL73514.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HM605]
gi|408199052|gb|EKI24261.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
ARS4.2123]
gi|408211510|gb|EKI36056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 07798]
gi|430873400|gb|ELB96974.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE2]
gi|430874659|gb|ELB98215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE4]
gi|430884179|gb|ELC07150.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE5]
gi|430904397|gb|ELC26106.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE16]
gi|430905956|gb|ELC27564.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE15]
gi|430915436|gb|ELC36515.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE21]
gi|430923933|gb|ELC44666.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE26]
gi|430933920|gb|ELC54311.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE39]
gi|430951568|gb|ELC70788.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE187]
gi|430952469|gb|ELC71533.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE181]
gi|430961206|gb|ELC79253.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE188]
gi|430980506|gb|ELC97266.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE201]
gi|430986442|gb|ELD03013.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE204]
gi|430996302|gb|ELD12588.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE206]
gi|431002733|gb|ELD18240.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE208]
gi|431018999|gb|ELD32429.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE213]
gi|431021849|gb|ELD35170.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE214]
gi|431036187|gb|ELD47563.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE220]
gi|431039170|gb|ELD50056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE224]
gi|431048605|gb|ELD58581.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE228]
gi|431049151|gb|ELD59115.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE230]
gi|431067383|gb|ELD75988.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE235]
gi|431072250|gb|ELD80002.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE236]
gi|431078004|gb|ELD85063.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE237]
gi|431082587|gb|ELD88901.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE47]
gi|431098290|gb|ELE03613.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE53]
gi|431105950|gb|ELE10284.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE55]
gi|431118909|gb|ELE21928.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE58]
gi|431121917|gb|ELE24786.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE57]
gi|431126769|gb|ELE29116.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE60]
gi|431129289|gb|ELE31465.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE62]
gi|431136307|gb|ELE38176.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE67]
gi|431138303|gb|ELE40139.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE66]
gi|431147360|gb|ELE48783.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE72]
gi|431152171|gb|ELE53129.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE75]
gi|431157138|gb|ELE57792.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE76]
gi|431168173|gb|ELE68427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE80]
gi|431178471|gb|ELE78380.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE83]
gi|431179192|gb|ELE79099.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE86]
gi|431188493|gb|ELE87935.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE87]
gi|431188865|gb|ELE88306.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE93]
gi|431198414|gb|ELE97237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE116]
gi|431241169|gb|ELF35616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE169]
gi|431253876|gb|ELF47354.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE8]
gi|431261124|gb|ELF53215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE9]
gi|431272832|gb|ELF63931.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE45]
gi|431290263|gb|ELF80988.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE43]
gi|431300376|gb|ELF89929.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE22]
gi|431306317|gb|ELF94630.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE46]
gi|431322703|gb|ELG10288.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE50]
gi|431325424|gb|ELG12812.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE59]
gi|431328296|gb|ELG15616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE63]
gi|431336174|gb|ELG23303.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE65]
gi|431338461|gb|ELG25548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE78]
gi|431350046|gb|ELG36874.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE79]
gi|431361941|gb|ELG48520.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE115]
gi|431366398|gb|ELG52896.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE118]
gi|431378589|gb|ELG63580.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE123]
gi|431387607|gb|ELG71431.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE140]
gi|431393725|gb|ELG77289.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE141]
gi|431398725|gb|ELG82145.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE144]
gi|431409599|gb|ELG92774.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE147]
gi|431414927|gb|ELG97478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE158]
gi|431424169|gb|ELH06266.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE192]
gi|431429263|gb|ELH11193.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE194]
gi|431431668|gb|ELH13443.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE165]
gi|431436827|gb|ELH18341.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE190]
gi|431461464|gb|ELH41732.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE183]
gi|431472200|gb|ELH52092.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE202]
gi|431479872|gb|ELH59605.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE207]
gi|431487440|gb|ELH67085.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE209]
gi|431496276|gb|ELH75860.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE215]
gi|431505847|gb|ELH84452.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE223]
gi|431511445|gb|ELH89577.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE227]
gi|431522400|gb|ELH99635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE229]
gi|431528635|gb|ELI05342.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE105]
gi|431541765|gb|ELI17204.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE109]
gi|431549414|gb|ELI23495.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE113]
gi|431566981|gb|ELI39996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE124]
gi|431567682|gb|ELI40675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE122]
gi|431579321|gb|ELI51905.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE125]
gi|431580542|gb|ELI53101.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE128]
gi|431594560|gb|ELI64840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE131]
gi|431598634|gb|ELI68422.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE133]
gi|431602730|gb|ELI72160.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE137]
gi|431617037|gb|ELI86059.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE145]
gi|431641611|gb|ELJ09346.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE160]
gi|431657178|gb|ELJ24145.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE167]
gi|431658985|gb|ELJ25892.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE168]
gi|431668158|gb|ELJ34690.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE174]
gi|431671456|gb|ELJ37737.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE176]
gi|431675062|gb|ELJ41208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE177]
gi|431684921|gb|ELJ50526.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE179]
gi|431686411|gb|ELJ51977.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE180]
gi|431698545|gb|ELJ63572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE82]
gi|431703142|gb|ELJ67831.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE88]
gi|431717310|gb|ELJ81409.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE95]
gi|431728649|gb|ELJ92322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE97]
gi|431732688|gb|ELJ96138.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE99]
gi|441713852|emb|CCQ06179.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli Nissle
1917]
gi|449317776|gb|EMD07860.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SEPT362]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 715
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 VDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>gi|374313823|ref|YP_005060252.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. 'Cinara cedri']
gi|363988049|gb|AEW44240.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. 'Cinara cedri']
Length = 695
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/693 (41%), Positives = 438/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATSAVMVSMDDTAVFVTVVGEKKPKLDQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQ++A+V+S + + +PD
Sbjct: 68 YAVGRIPGSFFRREGRPSESETLTARLIDRPIRPLFPCDFLNEVQIIATVVSVNAQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I ++I+NPT DEL +S L+LV + T L
Sbjct: 128 IVAIIGASAALSLSGIPFNGPIGAARVGYINNEYILNPTTDELKISSLDLVVSGTIRAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK ++ I+ + ++
Sbjct: 188 MVESEADVLSEDQMLGAINFGHRQQEVVIENINSLVAEAGKPSWNWRAPAINTELHTRIE 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA+A + + K ER +D I V L E+ + + + ++ VRK V+
Sbjct: 248 ELAKAKLGNAY--HITEKQERYAQIDDIKNHVITTLLEQDETLNTTEIKNIINNVRKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L TLG +AQ +
Sbjct: 306 RNRVLRGEPRIDGREKDMIRSLDVRTGILPRTHGSALFTRGETQALVIATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+ HY+FPP+ + E+G RRE+GHG LA++++LA++P DFPYTV
Sbjct: 366 DELMGEKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSMLAMMPNTEDFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAGV++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGVAMGLVKEAD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL+ ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRTGITALQMDIKIEGITKEIMQIALNQAKGARLHILNVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ IS PR + + +PR+ T+K + D ++ +IG G++ R + EET I + D GT+ +
Sbjct: 539 QAISMPRREISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETHTTIEIDDNGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A N + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S++ +
Sbjct: 599 ATNSEKAKFAIRRIEEITS-EIEVGKIYQGKVTRIVDFGAFVSIGGGKEGLVHISQIVDK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + + Q++ ++ I D +G ++LS+K
Sbjct: 658 RVDKVTDYLQMNQEVPVKVIEVDRQGRVRLSIK 690
>gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
Length = 712
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/711 (41%), Positives = 450/711 (63%), Gaps = 17/711 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DE+ S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A ++E + + H + +E L +AGK + +++ ++
Sbjct: 181 GTQNAVLMVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + I + AL E + +
Sbjct: 241 PLIARVAALAEARISDAYRITD----KQERYAQVGVIKDETIAALLAEDETLDDAEIGDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 VHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQSLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 417 KQEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK-- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 475 -----FVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K ++D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILSVMEQAISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P+A
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQKPQA 699
>gi|432803350|ref|ZP_20037304.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE84]
gi|431346681|gb|ELG33585.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE84]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVTALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
Length = 689
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/698 (43%), Positives = 441/698 (63%), Gaps = 14/698 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+E F + ++ R++T+ETG++A+ A+GAV++G +T+VL T T SK DF PLTVD
Sbjct: 1 MEQF--QMDLAGRMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVD 58
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK +A G +P +++RE P E +L R+IDRPIRPLF G +EV V+A+V+S D
Sbjct: 59 YEEKMYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQ 118
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
DP I SAAL +SD+PW GPI +R+GRI G+F+VNPT +L +DLN+V A T
Sbjct: 119 DCDPAICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGT 178
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
++ LM++ A E+ E + + AH E K + Q + K GK+K+ ++ + +
Sbjct: 179 KDAILMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEI 238
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
+ V ++A K +R +++ DV EE ++L + KA D +
Sbjct: 239 SDAVRAYGHDKLDAAVR--CADKQQRDAQENEVRADVLAHF-EEIYPDNLADVNKAFDAM 295
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K ++R I E +R DGRQLDEVRPI C +G LP HGS LF+RG TQVL T+ +
Sbjct: 296 TKEIVRHMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLS 355
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
E Q ++ L KR++ HY+FP F + E G RRE+GHG LAE+AL+ V+P E D
Sbjct: 356 EKQTIDGLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEED 415
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+SMA+VCG +++LMDAG+P++ VAG+++GLV++ GE
Sbjct: 416 FPYALRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQ-----GE-- 468
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +G+ +I+ E LE AHKGR+ I
Sbjct: 469 HYTILTDIQGMEDALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHI 528
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
+ M I+ PR Q + +PR+ T+K D+D +R +IG G + R I EETG +I + DG
Sbjct: 529 MGIMLDTIAEPRQQMSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDG 588
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + + K E + + +E+EVG +Y G VT + +GAFVE G++GL+H+S
Sbjct: 589 TVFIASVEQEGAAKAQEIITNLT-KEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHIS 647
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+L+ E V V DVVSVG ++ ++ I D +G + LS K
Sbjct: 648 KLAKERVENVEDVVSVGDEIMVKVIEIDKQGRVNLSRK 685
>gi|417663749|ref|ZP_12313329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|187611317|sp|A9MP39.2|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E D L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIDQLTAEDDTLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
Length = 762
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/703 (42%), Positives = 451/703 (64%), Gaps = 25/703 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 LEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +REG E+E L R+IDRP RPLFP GFY+E+ V+A VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKREGRATEKETLTSRLIDRPCRPLFPEGFYNEINVIAQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRIC-GQFIVNPTMDELSLSD--LNLVYACTR 236
DI+A A SAAL +S +P+ GPIG R+G G++++NPT+ + D L+LV A T+
Sbjct: 127 DIVAMIAASAALTISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGEDGRLDLVVAATQ 186
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ +A+E++E+++ + AH E+ K + I LAE+A K E +
Sbjct: 187 DAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQAAKAPWELDPVEDKSAKM 246
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP--KAV 352
+K+ + +EA + TD S R +A++ + ++A + + + + L K V
Sbjct: 247 DKLRAAIGSDLEAAYKITDKSA----RQDAVNAAREKAREAFADLAESDPAEYLGTLKLV 302
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R I+ +G R+DGR+LD+VRPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 303 KKLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLG 362
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
Q ++ L G FMLHY+FPP+ + EVG+ +RRE GHG LA +AL VLP
Sbjct: 363 TKDAEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPVLPD 422
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+FPYT+RV S++ S+GS+SMATVCGG++++MDAG+PL V+G+++GL+ E G
Sbjct: 423 AEEFPYTIRVLSDITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILE-----G 477
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E D+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ + LE A GR
Sbjct: 478 E--DFAVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTQALEQAKAGR 535
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + ++ RT+ +++PR+ T++ D +R +IG G + R+I ETG ++ +
Sbjct: 536 AHILGEMAKALTGARTEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDID 595
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D GT+ + + N +E + ++ I+ E EVG IY G V ++ ++GAFV F GG+ GL+
Sbjct: 596 DEGTIKISSSNADEIEAAKKWIEGIV-EEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLV 654
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 655 HVSEMKNERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVV 697
>gi|432442657|ref|ZP_19684993.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE189]
gi|432447777|ref|ZP_19690074.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE191]
gi|433015472|ref|ZP_20203807.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE104]
gi|433025037|ref|ZP_20213011.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE106]
gi|433199916|ref|ZP_20383804.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE94]
gi|433325699|ref|ZP_20402758.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli J96]
gi|430964861|gb|ELC82307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE189]
gi|430971748|gb|ELC88757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE191]
gi|431527362|gb|ELI04078.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE104]
gi|431532435|gb|ELI08991.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE106]
gi|431718450|gb|ELJ82524.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE94]
gi|432346181|gb|ELL40671.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli J96]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 445/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L +E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLDEDETLDENELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. DH10B]
gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
REL606]
gi|254289858|ref|YP_003055606.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BL21(DE3)]
gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
187-1]
gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
175-1]
gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
146-1]
gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
gi|387613856|ref|YP_006116972.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
H10407]
gi|388479159|ref|YP_491351.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. W3110]
gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr.
MG1655]
gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K12 substr. W3110]
gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. DH10B]
gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
REL606]
gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BL21(DE3)]
gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
175-1]
gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
187-1]
gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
146-1]
gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
H10407]
gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
gi|359333363|dbj|BAL39810.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MDS42]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227]
gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++++LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|387831051|ref|YP_003350988.1| polynucleotide phosphorylase [Escherichia coli SE15]
gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|417691544|ref|ZP_12340754.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase [Escherichia coli E24377A]
gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC508]
gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1012]
gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4024]
gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209397723|ref|YP_002272635.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4115]
gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. TW14359]
gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. FRIK966]
gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
gi|378711379|ref|YP_005276272.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11FL]
gi|383180344|ref|YP_005458349.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei 53G]
gi|386610555|ref|YP_006126041.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|386625972|ref|YP_006145700.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O7:K1
str. CE10]
gi|386699866|ref|YP_006163703.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
KO11FL]
gi|386711073|ref|YP_006174794.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|387508569|ref|YP_006160825.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. RM12579]
gi|407471140|ref|YP_006782417.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480203|ref|YP_006777352.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410480764|ref|YP_006768310.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577952|ref|ZP_11435126.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3233-85]
gi|415795643|ref|ZP_11497156.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E128010]
gi|415851003|ref|ZP_11527798.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
gi|416281380|ref|ZP_11645776.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
9905]
gi|416308475|ref|ZP_11655151.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1044]
gi|416322338|ref|ZP_11664186.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC1212]
gi|416332575|ref|ZP_11670486.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1125]
gi|416341089|ref|ZP_11675810.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
EC4100B]
gi|416777664|ref|ZP_11875315.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. G5101]
gi|416789058|ref|ZP_11880240.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. 493-89]
gi|416800967|ref|ZP_11885145.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. H 2687]
gi|416811599|ref|ZP_11889956.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. 3256-97]
gi|416822107|ref|ZP_11894614.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. USDA 5905]
gi|416832499|ref|ZP_11899710.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. LSU-61]
gi|417146725|ref|ZP_11987572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2264]
gi|417156731|ref|ZP_11994355.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0497]
gi|417163199|ref|ZP_11998529.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0741]
gi|417175188|ref|ZP_12004984.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2608]
gi|417184131|ref|ZP_12009823.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0624]
gi|417222439|ref|ZP_12025879.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 96.154]
gi|417229171|ref|ZP_12030929.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0959]
gi|417249518|ref|ZP_12041302.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0967]
gi|417268375|ref|ZP_12055736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.3884]
gi|417582782|ref|ZP_12233583.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_B2F1]
gi|417598574|ref|ZP_12249202.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3030-1]
gi|417604049|ref|ZP_12254614.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_94C]
gi|417609855|ref|ZP_12260353.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_DG131-3]
gi|417625250|ref|ZP_12275543.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_H.1.8]
gi|417630620|ref|ZP_12280855.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_MHI813]
gi|417641068|ref|ZP_12291203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TX1999]
gi|417668653|ref|ZP_12318194.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_O31]
gi|417806813|ref|ZP_12453745.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. LB226692]
gi|417834559|ref|ZP_12481001.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 01-09591]
gi|417865981|ref|ZP_12511024.1| pnp [Escherichia coli O104:H4 str. C227-11]
gi|418268639|ref|ZP_12887308.1| pnp [Shigella sonnei str. Moseley]
gi|418941583|ref|ZP_13494905.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H43 str. T22]
gi|419047171|ref|ZP_13594105.1| pnp [Escherichia coli DEC3A]
gi|419052942|ref|ZP_13599809.1| pnp [Escherichia coli DEC3B]
gi|419058939|ref|ZP_13605741.1| pnp [Escherichia coli DEC3C]
gi|419064437|ref|ZP_13611159.1| pnp [Escherichia coli DEC3D]
gi|419071386|ref|ZP_13616999.1| pnp [Escherichia coli DEC3E]
gi|419077339|ref|ZP_13622842.1| pnp [Escherichia coli DEC3F]
gi|419082415|ref|ZP_13627861.1| pnp [Escherichia coli DEC4A]
gi|419088243|ref|ZP_13633595.1| pnp [Escherichia coli DEC4B]
gi|419094202|ref|ZP_13639482.1| pnp [Escherichia coli DEC4C]
gi|419100062|ref|ZP_13645254.1| pnp [Escherichia coli DEC4D]
gi|419105789|ref|ZP_13650914.1| pnp [Escherichia coli DEC4E]
gi|419111214|ref|ZP_13656266.1| pnp [Escherichia coli DEC4F]
gi|419116712|ref|ZP_13661724.1| pnp [Escherichia coli DEC5A]
gi|419122428|ref|ZP_13667371.1| pnp [Escherichia coli DEC5B]
gi|419127847|ref|ZP_13672722.1| pnp [Escherichia coli DEC5C]
gi|419133276|ref|ZP_13678104.1| pnp [Escherichia coli DEC5D]
gi|419138432|ref|ZP_13683223.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC5E]
gi|419172007|ref|ZP_13715888.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7A]
gi|419182570|ref|ZP_13726180.1| pnp [Escherichia coli DEC7C]
gi|419188189|ref|ZP_13731696.1| pnp [Escherichia coli DEC7D]
gi|419193315|ref|ZP_13736762.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7E]
gi|419279811|ref|ZP_13822054.1| pnp [Escherichia coli DEC10E]
gi|419291365|ref|ZP_13833451.1| pnp [Escherichia coli DEC11A]
gi|419296651|ref|ZP_13838690.1| pnp [Escherichia coli DEC11B]
gi|419302168|ref|ZP_13844161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11C]
gi|419308151|ref|ZP_13850046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11D]
gi|419313187|ref|ZP_13855046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11E]
gi|419318616|ref|ZP_13860415.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12A]
gi|419324884|ref|ZP_13866572.1| pnp [Escherichia coli DEC12B]
gi|419330820|ref|ZP_13872418.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12C]
gi|419336310|ref|ZP_13877828.1| pnp [Escherichia coli DEC12D]
gi|419341723|ref|ZP_13883179.1| pnp [Escherichia coli DEC12E]
gi|419346916|ref|ZP_13888287.1| pnp [Escherichia coli DEC13A]
gi|419351383|ref|ZP_13892714.1| pnp [Escherichia coli DEC13B]
gi|419356856|ref|ZP_13898104.1| pnp [Escherichia coli DEC13C]
gi|419361836|ref|ZP_13903047.1| pnp [Escherichia coli DEC13D]
gi|419371742|ref|ZP_13912852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC14A]
gi|419377237|ref|ZP_13918257.1| pnp [Escherichia coli DEC14B]
gi|419387864|ref|ZP_13928734.1| pnp [Escherichia coli DEC14D]
gi|419805324|ref|ZP_14330463.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AI27]
gi|419866820|ref|ZP_14389169.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H25 str. CVM9340]
gi|419868273|ref|ZP_14390565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. CVM9450]
gi|419947960|ref|ZP_14464268.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli CUMT8]
gi|420271563|ref|ZP_14773916.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA22]
gi|420277210|ref|ZP_14779491.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA40]
gi|420282023|ref|ZP_14784256.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW06591]
gi|420288420|ref|ZP_14790604.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10246]
gi|420294284|ref|ZP_14796398.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW11039]
gi|420300137|ref|ZP_14802182.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09109]
gi|420305988|ref|ZP_14807977.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10119]
gi|420311415|ref|ZP_14813344.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1738]
gi|420317102|ref|ZP_14818975.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1734]
gi|420360519|ref|ZP_14861474.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3226-85]
gi|420365054|ref|ZP_14865923.1| pnp [Shigella sonnei 4822-66]
gi|420387419|ref|ZP_14886760.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa12]
gi|420393283|ref|ZP_14892529.1| pnp [Escherichia coli EPEC C342-62]
gi|421814202|ref|ZP_16249909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0416]
gi|421819998|ref|ZP_16255485.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0821]
gi|421826010|ref|ZP_16261364.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK920]
gi|421832726|ref|ZP_16268008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA7]
gi|422760635|ref|ZP_16814395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
gi|422770957|ref|ZP_16824647.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
gi|422775580|ref|ZP_16829235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
gi|422959939|ref|ZP_16971574.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H494]
gi|422989369|ref|ZP_16980141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C227-11]
gi|422996264|ref|ZP_16987027.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C236-11]
gi|423001413|ref|ZP_16992166.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 09-7901]
gi|423005073|ref|ZP_16995818.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 04-8351]
gi|423011578|ref|ZP_17002311.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-3677]
gi|423020806|ref|ZP_17011513.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4404]
gi|423025971|ref|ZP_17016666.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4522]
gi|423031790|ref|ZP_17022476.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4623]
gi|423034662|ref|ZP_17025340.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C1]
gi|423039790|ref|ZP_17030459.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C2]
gi|423046474|ref|ZP_17037133.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C3]
gi|423055011|ref|ZP_17043817.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C4]
gi|423057003|ref|ZP_17045802.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C5]
gi|423727123|ref|ZP_17701037.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA31]
gi|424079328|ref|ZP_17816296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA505]
gi|424085784|ref|ZP_17822271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA517]
gi|424098856|ref|ZP_17834132.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1985]
gi|424111716|ref|ZP_17845946.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 93-001]
gi|424117653|ref|ZP_17851487.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA3]
gi|424123842|ref|ZP_17857149.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA5]
gi|424129993|ref|ZP_17862896.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA9]
gi|424142869|ref|ZP_17874736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA14]
gi|424149270|ref|ZP_17880641.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA15]
gi|424155120|ref|ZP_17886052.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA24]
gi|424253719|ref|ZP_17891599.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA25]
gi|424332506|ref|ZP_17897503.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA28]
gi|424451555|ref|ZP_17903225.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA32]
gi|424457745|ref|ZP_17908855.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA33]
gi|424464202|ref|ZP_17914579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA39]
gi|424470507|ref|ZP_17920319.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA41]
gi|424477015|ref|ZP_17926328.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA42]
gi|424482771|ref|ZP_17931747.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07945]
gi|424488954|ref|ZP_17937500.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09098]
gi|424495606|ref|ZP_17943229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09195]
gi|424502306|ref|ZP_17949193.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4203]
gi|424508559|ref|ZP_17954943.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4196]
gi|424515909|ref|ZP_17960544.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14313]
gi|424522111|ref|ZP_17966223.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14301]
gi|424527988|ref|ZP_17971700.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4421]
gi|424534134|ref|ZP_17977478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4422]
gi|424540187|ref|ZP_17983127.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4013]
gi|424546315|ref|ZP_17988684.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4402]
gi|424552538|ref|ZP_17994379.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4439]
gi|424558728|ref|ZP_18000134.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4436]
gi|424565065|ref|ZP_18006064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4437]
gi|424571193|ref|ZP_18011738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4448]
gi|424577349|ref|ZP_18017399.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1845]
gi|424583169|ref|ZP_18022812.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1863]
gi|425105939|ref|ZP_18508253.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.2239]
gi|425111952|ref|ZP_18513869.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 6.0172]
gi|425127875|ref|ZP_18529039.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0586]
gi|425133618|ref|ZP_18534464.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.2524]
gi|425140194|ref|ZP_18540572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0833]
gi|425145907|ref|ZP_18545898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0869]
gi|425152022|ref|ZP_18551633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.0221]
gi|425157894|ref|ZP_18557154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA34]
gi|425164247|ref|ZP_18563130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA506]
gi|425169990|ref|ZP_18568459.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA507]
gi|425188358|ref|ZP_18585627.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1997]
gi|425195124|ref|ZP_18591890.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE1487]
gi|425213739|ref|ZP_18609135.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA4]
gi|425219861|ref|ZP_18614820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA23]
gi|425226411|ref|ZP_18620874.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA49]
gi|425232668|ref|ZP_18626704.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA45]
gi|425238592|ref|ZP_18632308.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TT12B]
gi|425244828|ref|ZP_18638130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MA6]
gi|425251019|ref|ZP_18643958.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5905]
gi|425256806|ref|ZP_18649314.1| polyribonucleotide nucleotidyltransferase [Escherichia coli CB7326]
gi|425263057|ref|ZP_18655056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EC96038]
gi|425269054|ref|ZP_18660681.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5412]
gi|425296509|ref|ZP_18686673.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA38]
gi|425313197|ref|ZP_18702372.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1735]
gi|425319181|ref|ZP_18707965.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1736]
gi|425325273|ref|ZP_18713626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1737]
gi|425331640|ref|ZP_18719474.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1846]
gi|425337821|ref|ZP_18725174.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1847]
gi|425349937|ref|ZP_18736401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1849]
gi|425356238|ref|ZP_18742302.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1850]
gi|425362200|ref|ZP_18747844.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1856]
gi|425368418|ref|ZP_18753538.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1862]
gi|425387623|ref|ZP_18771178.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1866]
gi|425394274|ref|ZP_18777379.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1868]
gi|425400416|ref|ZP_18783117.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1869]
gi|425406503|ref|ZP_18788721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1870]
gi|425412889|ref|ZP_18794648.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE098]
gi|425419203|ref|ZP_18800468.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK523]
gi|425430476|ref|ZP_18811081.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1304]
gi|428948909|ref|ZP_19021181.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1467]
gi|428954983|ref|ZP_19026775.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1042]
gi|428960971|ref|ZP_19032262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
89.0511]
gi|428967588|ref|ZP_19038296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0091]
gi|428973338|ref|ZP_19043660.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0039]
gi|428979781|ref|ZP_19049597.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.2281]
gi|428985587|ref|ZP_19054976.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0055]
gi|428991703|ref|ZP_19060687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0056]
gi|428997591|ref|ZP_19066181.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
94.0618]
gi|429003859|ref|ZP_19071956.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0183]
gi|429009958|ref|ZP_19077412.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.1288]
gi|429016480|ref|ZP_19083358.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0943]
gi|429022332|ref|ZP_19088848.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0428]
gi|429028379|ref|ZP_19094368.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0427]
gi|429034554|ref|ZP_19100072.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0939]
gi|429040639|ref|ZP_19105735.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0932]
gi|429046591|ref|ZP_19111299.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0107]
gi|429051910|ref|ZP_19116472.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0003]
gi|429057360|ref|ZP_19121646.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.1742]
gi|429062861|ref|ZP_19126849.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0007]
gi|429075035|ref|ZP_19138283.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0678]
gi|429080235|ref|ZP_19143367.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0713]
gi|429720834|ref|ZP_19255756.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9450]
gi|429772732|ref|ZP_19304750.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02030]
gi|429778098|ref|ZP_19310066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02033-1]
gi|429786404|ref|ZP_19318297.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02092]
gi|429787348|ref|ZP_19319238.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02093]
gi|429793144|ref|ZP_19324990.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02281]
gi|429799723|ref|ZP_19331517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02318]
gi|429803339|ref|ZP_19335097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02913]
gi|429807980|ref|ZP_19339700.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03439]
gi|429813679|ref|ZP_19345356.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-04080]
gi|429818890|ref|ZP_19350522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03943]
gi|429828277|ref|ZP_19359296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0109]
gi|429834712|ref|ZP_19365013.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0010]
gi|429905238|ref|ZP_19371215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9990]
gi|429909374|ref|ZP_19375337.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9941]
gi|429915246|ref|ZP_19381192.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4984]
gi|429920292|ref|ZP_19386220.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5604]
gi|429926096|ref|ZP_19392008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4986]
gi|429930031|ref|ZP_19395932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4987]
gi|429936570|ref|ZP_19402455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4988]
gi|429942251|ref|ZP_19408124.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5603]
gi|429944934|ref|ZP_19410795.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-6006]
gi|429952490|ref|ZP_19418335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0465]
gi|429955845|ref|ZP_19421675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0466]
gi|432378354|ref|ZP_19621338.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE12]
gi|432482500|ref|ZP_19724451.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE210]
gi|432676292|ref|ZP_19911742.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE142]
gi|432681894|ref|ZP_19917253.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE143]
gi|432751641|ref|ZP_19986224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE29]
gi|432807428|ref|ZP_20041343.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE91]
gi|432810898|ref|ZP_20044757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE101]
gi|432828803|ref|ZP_20062421.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE135]
gi|432836128|ref|ZP_20069661.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE136]
gi|432936354|ref|ZP_20135488.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE184]
gi|432949232|ref|ZP_20144155.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE196]
gi|432969234|ref|ZP_20158146.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE203]
gi|433044710|ref|ZP_20232197.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE117]
gi|433093554|ref|ZP_20279811.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE138]
gi|433131727|ref|ZP_20317157.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE163]
gi|433136411|ref|ZP_20321746.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE166]
gi|433195212|ref|ZP_20379191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE90]
gi|443619238|ref|YP_007383094.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O78]
gi|444926792|ref|ZP_21246067.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
09BKT078844]
gi|444932478|ref|ZP_21251499.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0814]
gi|444937904|ref|ZP_21256661.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0815]
gi|444943497|ref|ZP_21261998.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0816]
gi|444949001|ref|ZP_21267304.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0839]
gi|444954603|ref|ZP_21272681.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0848]
gi|444960074|ref|ZP_21277909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1753]
gi|444965319|ref|ZP_21282898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1775]
gi|444971258|ref|ZP_21288607.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1793]
gi|444976504|ref|ZP_21293607.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1805]
gi|444981944|ref|ZP_21298847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
700728]
gi|444987303|ref|ZP_21304077.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA11]
gi|444992611|ref|ZP_21309251.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA19]
gi|444997897|ref|ZP_21314392.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA13]
gi|445003493|ref|ZP_21319878.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA2]
gi|445008865|ref|ZP_21325102.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA47]
gi|445014029|ref|ZP_21330131.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA48]
gi|445019906|ref|ZP_21335868.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA8]
gi|445025313|ref|ZP_21341132.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 7.1982]
gi|445030738|ref|ZP_21346403.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1781]
gi|445036169|ref|ZP_21351693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1762]
gi|445041790|ref|ZP_21357158.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA35]
gi|445047053|ref|ZP_21362298.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4880]
gi|445052571|ref|ZP_21367595.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0083]
gi|445058268|ref|ZP_21373124.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0670]
gi|450222731|ref|ZP_21896886.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O08]
gi|452968173|ref|ZP_21966400.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4009]
gi|187610299|sp|A7ZS61.1|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610334|sp|Q8X9M3.2|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611306|sp|Q3YX77.2|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702649|sp|B5YS54.1|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096725|sp|B7LH99.2|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096726|sp|B7NKN3.2|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096731|sp|B6I1N9.2|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E24377A]
gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC508]
gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1012]
gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4115]
gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. TW14359]
gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
9905]
gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC1212]
gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
EC4100B]
gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. G5101]
gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. 493-89]
gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. H 2687]
gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. USDA 5905]
gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. LSU-61]
gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E128010]
gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11FL]
gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1125]
gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1044]
gi|340732703|gb|EGR61839.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 01-09591]
gi|340738270|gb|EGR72519.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. LB226692]
gi|341919270|gb|EGT68882.1| pnp [Escherichia coli O104:H4 str. C227-11]
gi|345336239|gb|EGW68676.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_B2F1]
gi|345348075|gb|EGW80373.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_94C]
gi|345349732|gb|EGW82009.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3030-1]
gi|345355531|gb|EGW87741.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_DG131-3]
gi|345371021|gb|EGX02995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_MHI813]
gi|345374453|gb|EGX06405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_H.1.8]
gi|345392232|gb|EGX22017.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TX1999]
gi|349739708|gb|AEQ14414.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O7:K1
str. CE10]
gi|354860529|gb|EHF20975.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C236-11]
gi|354863847|gb|EHF24278.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C227-11]
gi|354865761|gb|EHF26189.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 04-8351]
gi|354872185|gb|EHF32580.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 09-7901]
gi|354878528|gb|EHF38877.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-3677]
gi|354887071|gb|EHF47348.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4404]
gi|354890961|gb|EHF51197.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4522]
gi|354895376|gb|EHF55563.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4623]
gi|354906860|gb|EHF66931.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C1]
gi|354909883|gb|EHF69913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C2]
gi|354911968|gb|EHF71970.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C3]
gi|354914717|gb|EHF74699.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C4]
gi|354922065|gb|EHF81983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C5]
gi|371594317|gb|EHN83185.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H494]
gi|374360563|gb|AEZ42270.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. RM12579]
gi|375323083|gb|EHS68806.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H43 str. T22]
gi|377891101|gb|EHU55554.1| pnp [Escherichia coli DEC3A]
gi|377891789|gb|EHU56241.1| pnp [Escherichia coli DEC3B]
gi|377903606|gb|EHU67897.1| pnp [Escherichia coli DEC3C]
gi|377907790|gb|EHU72013.1| pnp [Escherichia coli DEC3D]
gi|377909660|gb|EHU73860.1| pnp [Escherichia coli DEC3E]
gi|377919417|gb|EHU83460.1| pnp [Escherichia coli DEC3F]
gi|377924474|gb|EHU88421.1| pnp [Escherichia coli DEC4A]
gi|377928735|gb|EHU92645.1| pnp [Escherichia coli DEC4B]
gi|377939129|gb|EHV02886.1| pnp [Escherichia coli DEC4D]
gi|377939978|gb|EHV03730.1| pnp [Escherichia coli DEC4C]
gi|377945918|gb|EHV09608.1| pnp [Escherichia coli DEC4E]
gi|377955120|gb|EHV18677.1| pnp [Escherichia coli DEC4F]
gi|377958521|gb|EHV22034.1| pnp [Escherichia coli DEC5A]
gi|377963391|gb|EHV26838.1| pnp [Escherichia coli DEC5B]
gi|377971708|gb|EHV35062.1| pnp [Escherichia coli DEC5C]
gi|377972826|gb|EHV36171.1| pnp [Escherichia coli DEC5D]
gi|377982852|gb|EHV46104.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC5E]
gi|378013794|gb|EHV76711.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7A]
gi|378021857|gb|EHV84552.1| pnp [Escherichia coli DEC7C]
gi|378025938|gb|EHV88578.1| pnp [Escherichia coli DEC7D]
gi|378036230|gb|EHV98774.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7E]
gi|378125794|gb|EHW87192.1| pnp [Escherichia coli DEC10E]
gi|378127024|gb|EHW88416.1| pnp [Escherichia coli DEC11A]
gi|378139359|gb|EHX00599.1| pnp [Escherichia coli DEC11B]
gi|378145911|gb|EHX07066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11D]
gi|378147872|gb|EHX09017.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11C]
gi|378156213|gb|EHX17265.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11E]
gi|378162559|gb|EHX23519.1| pnp [Escherichia coli DEC12B]
gi|378166560|gb|EHX27482.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12A]
gi|378167594|gb|EHX28506.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12C]
gi|378180042|gb|EHX40744.1| pnp [Escherichia coli DEC12D]
gi|378184157|gb|EHX44794.1| pnp [Escherichia coli DEC12E]
gi|378184863|gb|EHX45499.1| pnp [Escherichia coli DEC13A]
gi|378197197|gb|EHX57680.1| pnp [Escherichia coli DEC13C]
gi|378197755|gb|EHX58231.1| pnp [Escherichia coli DEC13B]
gi|378200715|gb|EHX61169.1| pnp [Escherichia coli DEC13D]
gi|378214452|gb|EHX74759.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC14A]
gi|378216746|gb|EHX77030.1| pnp [Escherichia coli DEC14B]
gi|378229378|gb|EHX89519.1| pnp [Escherichia coli DEC14D]
gi|383391393|gb|AFH16351.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
KO11FL]
gi|383406765|gb|AFH13008.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|384471665|gb|EIE55737.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AI27]
gi|386162665|gb|EIH24461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2264]
gi|386165481|gb|EIH32001.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0497]
gi|386173690|gb|EIH45702.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0741]
gi|386177880|gb|EIH55359.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2608]
gi|386183693|gb|EIH66440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0624]
gi|386202241|gb|EII01232.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 96.154]
gi|386208506|gb|EII13011.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0959]
gi|386219839|gb|EII36303.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0967]
gi|386230733|gb|EII58088.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.3884]
gi|388334082|gb|EIL00690.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H25 str. CVM9340]
gi|388345582|gb|EIL11352.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. CVM9450]
gi|388422135|gb|EIL81724.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli CUMT8]
gi|390640540|gb|EIN19992.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA517]
gi|390640749|gb|EIN20194.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA505]
gi|390658272|gb|EIN36069.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1985]
gi|390658371|gb|EIN36166.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 93-001]
gi|390675339|gb|EIN51490.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA3]
gi|390678662|gb|EIN54608.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA5]
gi|390682276|gb|EIN58046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA9]
gi|390698283|gb|EIN72668.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA14]
gi|390698921|gb|EIN73289.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA15]
gi|390712984|gb|EIN85928.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA22]
gi|390719734|gb|EIN92452.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA25]
gi|390721415|gb|EIN94110.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA24]
gi|390725479|gb|EIN97981.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA28]
gi|390739002|gb|EIO10195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA31]
gi|390739672|gb|EIO10833.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA32]
gi|390743145|gb|EIO14130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA33]
gi|390756807|gb|EIO26308.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA40]
gi|390763739|gb|EIO32966.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA39]
gi|390764920|gb|EIO34110.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA41]
gi|390766556|gb|EIO35675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA42]
gi|390780184|gb|EIO47884.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW06591]
gi|390787469|gb|EIO54954.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07945]
gi|390788982|gb|EIO56447.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10246]
gi|390794742|gb|EIO62032.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW11039]
gi|390802514|gb|EIO69550.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09098]
gi|390805758|gb|EIO72694.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09109]
gi|390814503|gb|EIO81067.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10119]
gi|390823900|gb|EIO89915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4203]
gi|390825893|gb|EIO91779.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09195]
gi|390828735|gb|EIO94372.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4196]
gi|390843251|gb|EIP07057.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14313]
gi|390844083|gb|EIP07845.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14301]
gi|390848853|gb|EIP12306.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4421]
gi|390859163|gb|EIP21517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4422]
gi|390863723|gb|EIP25854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4013]
gi|390868450|gb|EIP30201.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4402]
gi|390876494|gb|EIP37479.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4439]
gi|390881911|gb|EIP42463.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4436]
gi|390891584|gb|EIP51206.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4437]
gi|390893622|gb|EIP53162.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4448]
gi|390898772|gb|EIP58033.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1738]
gi|390907359|gb|EIP66228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1734]
gi|390917179|gb|EIP75612.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1863]
gi|390918183|gb|EIP76594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1845]
gi|391278592|gb|EIQ37293.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3226-85]
gi|391282943|gb|EIQ41572.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3233-85]
gi|391292556|gb|EIQ50877.1| pnp [Shigella sonnei 4822-66]
gi|391303210|gb|EIQ61051.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa12]
gi|391310959|gb|EIQ68609.1| pnp [Escherichia coli EPEC C342-62]
gi|397783900|gb|EJK94757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_O31]
gi|397896315|gb|EJL12734.1| pnp [Shigella sonnei str. Moseley]
gi|406775926|gb|AFS55350.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407052500|gb|AFS72551.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407067175|gb|AFS88222.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408063097|gb|EKG97596.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA7]
gi|408065312|gb|EKG99787.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK920]
gi|408067676|gb|EKH02106.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA34]
gi|408077571|gb|EKH11770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA506]
gi|408081031|gb|EKH15065.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA507]
gi|408102300|gb|EKH34715.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1997]
gi|408106712|gb|EKH38805.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE1487]
gi|408125731|gb|EKH56321.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA4]
gi|408135750|gb|EKH65520.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA23]
gi|408138465|gb|EKH68134.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA49]
gi|408144799|gb|EKH74013.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA45]
gi|408153100|gb|EKH81504.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TT12B]
gi|408158204|gb|EKH86328.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MA6]
gi|408162185|gb|EKH90100.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5905]
gi|408171460|gb|EKH98575.1| polyribonucleotide nucleotidyltransferase [Escherichia coli CB7326]
gi|408178223|gb|EKI04944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EC96038]
gi|408181506|gb|EKI08061.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5412]
gi|408214948|gb|EKI39354.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA38]
gi|408225160|gb|EKI48849.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1735]
gi|408236322|gb|EKI59226.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1736]
gi|408240058|gb|EKI62771.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1737]
gi|408244572|gb|EKI66992.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1846]
gi|408253327|gb|EKI74925.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1847]
gi|408263795|gb|EKI84623.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1849]
gi|408272403|gb|EKI92493.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1850]
gi|408275380|gb|EKI95342.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1856]
gi|408283651|gb|EKJ02799.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1862]
gi|408305464|gb|EKJ22857.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1868]
gi|408306057|gb|EKJ23434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1866]
gi|408316936|gb|EKJ33186.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1869]
gi|408322536|gb|EKJ38515.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1870]
gi|408324789|gb|EKJ40710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE098]
gi|408334907|gb|EKJ49772.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK523]
gi|408344341|gb|EKJ58711.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1304]
gi|408547170|gb|EKK24569.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.2239]
gi|408548620|gb|EKK26002.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 6.0172]
gi|408565585|gb|EKK41668.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0586]
gi|408577366|gb|EKK52941.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0833]
gi|408579634|gb|EKK55086.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.2524]
gi|408589513|gb|EKK64023.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0869]
gi|408595037|gb|EKK69305.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.0221]
gi|408599735|gb|EKK73624.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0416]
gi|408610442|gb|EKK83813.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0821]
gi|427202530|gb|EKV72854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1042]
gi|427203882|gb|EKV74178.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
89.0511]
gi|427206440|gb|EKV76652.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1467]
gi|427218844|gb|EKV87824.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0091]
gi|427222383|gb|EKV91166.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.2281]
gi|427225633|gb|EKV94258.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0039]
gi|427239646|gb|EKW07124.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0056]
gi|427240042|gb|EKW07509.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0055]
gi|427243903|gb|EKW11251.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
94.0618]
gi|427258368|gb|EKW24458.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0183]
gi|427259261|gb|EKW25320.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0943]
gi|427261883|gb|EKW27799.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.1288]
gi|427274568|gb|EKW39216.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0428]
gi|427277185|gb|EKW41727.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0427]
gi|427281514|gb|EKW45824.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0939]
gi|427289940|gb|EKW53439.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0932]
gi|427297030|gb|EKW60074.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0107]
gi|427298779|gb|EKW61773.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0003]
gi|427309750|gb|EKW72045.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.1742]
gi|427312943|gb|EKW75079.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0007]
gi|427326121|gb|EKW87547.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0678]
gi|427327495|gb|EKW88882.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0713]
gi|429251918|gb|EKY36480.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0109]
gi|429253374|gb|EKY37862.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0010]
gi|429346576|gb|EKY83355.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02092]
gi|429356555|gb|EKY93230.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02033-1]
gi|429357430|gb|EKY94103.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02030]
gi|429372722|gb|EKZ09271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02093]
gi|429374663|gb|EKZ11202.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02281]
gi|429378345|gb|EKZ14859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02318]
gi|429388525|gb|EKZ24950.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02913]
gi|429391294|gb|EKZ27698.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03439]
gi|429392303|gb|EKZ28704.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03943]
gi|429402792|gb|EKZ39082.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-04080]
gi|429403988|gb|EKZ40268.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9990]
gi|429407651|gb|EKZ43902.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9450]
gi|429415098|gb|EKZ51268.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4984]
gi|429418552|gb|EKZ54695.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4986]
gi|429424819|gb|EKZ60917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4987]
gi|429429009|gb|EKZ65080.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4988]
gi|429433672|gb|EKZ69703.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5603]
gi|429435216|gb|EKZ71235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-6006]
gi|429440958|gb|EKZ76932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5604]
gi|429445896|gb|EKZ81835.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0465]
gi|429455661|gb|EKZ91516.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0466]
gi|429459376|gb|EKZ95195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9941]
gi|430896466|gb|ELC18701.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE12]
gi|431005002|gb|ELD20211.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE210]
gi|431211973|gb|ELF09924.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE142]
gi|431218064|gb|ELF15548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE143]
gi|431294817|gb|ELF84996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE29]
gi|431353870|gb|ELG40623.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE91]
gi|431360638|gb|ELG47240.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE101]
gi|431382875|gb|ELG67018.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE136]
gi|431383657|gb|ELG67781.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE135]
gi|431451367|gb|ELH31843.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE184]
gi|431455864|gb|ELH36219.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE196]
gi|431468944|gb|ELH48877.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE203]
gi|431554455|gb|ELI28336.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE117]
gi|431608204|gb|ELI77552.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE138]
gi|431644464|gb|ELJ12126.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE163]
gi|431654436|gb|ELJ21491.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE166]
gi|431713918|gb|ELJ78126.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE90]
gi|443423746|gb|AGC88650.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O78]
gi|444536125|gb|ELV16157.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0814]
gi|444537877|gb|ELV17785.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
09BKT078844]
gi|444546303|gb|ELV25056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0815]
gi|444555767|gb|ELV33211.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0839]
gi|444556083|gb|ELV33514.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0816]
gi|444561131|gb|ELV38263.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0848]
gi|444570340|gb|ELV46871.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1753]
gi|444574297|gb|ELV50615.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1775]
gi|444577503|gb|ELV53628.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1793]
gi|444590768|gb|ELV66067.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA11]
gi|444591002|gb|ELV66299.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
700728]
gi|444591821|gb|ELV67083.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1805]
gi|444604585|gb|ELV79250.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA13]
gi|444605633|gb|ELV80274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA19]
gi|444613774|gb|ELV88024.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA2]
gi|444621452|gb|ELV95428.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA47]
gi|444622050|gb|ELV96015.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA48]
gi|444628281|gb|ELW02025.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA8]
gi|444636328|gb|ELW09729.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 7.1982]
gi|444638824|gb|ELW12149.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1781]
gi|444643334|gb|ELW16492.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1762]
gi|444652792|gb|ELW25541.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA35]
gi|444658123|gb|ELW30585.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4880]
gi|444661233|gb|ELW33560.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0083]
gi|444668265|gb|ELW40287.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0670]
gi|449314693|gb|EMD04855.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O08]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
CFT073]
gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase [Escherichia coli UTI89]
gi|386631046|ref|YP_006150766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i2']
gi|386635966|ref|YP_006155685.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i14']
gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073]
gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89]
gi|355421945|gb|AER86142.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i2']
gi|355426865|gb|AER91061.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i14']
Length = 740
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 30 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 89
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 90 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 149
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 150 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 209
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 210 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 269
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 270 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 325
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 326 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 382
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 383 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 442
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 443 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 502
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 503 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 555
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 556 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 615
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 616 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 674
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 675 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 719
>gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
ATCC 35469]
gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
ATCC 35469]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|417285924|ref|ZP_12073215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07793]
gi|386251165|gb|EII97332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07793]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGVMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Nepal516]
Length = 731
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/708 (42%), Positives = 446/708 (62%), Gaps = 13/708 (1%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFL 110
GT +L +F+ G +T+ETG +AR A AV++ MD+T V TV K + F
Sbjct: 24 GTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFF 83
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V
Sbjct: 84 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATV 143
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+S + + +PDI+A SA L LS IP+ GPIG R+G I Q+++NPT DEL S L+L
Sbjct: 144 VSVNPQINPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDL 203
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T LM++ +A +SE+ + + H + +E L +AGK K +++
Sbjct: 204 VVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEP 263
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
++E +V+ LAEA + + K ER +D I DV +AL + D +
Sbjct: 264 VNEALHARVAELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQD 321
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ +V K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 322 ILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTAT 381
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+
Sbjct: 382 LGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVM 441
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 442 PSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-- 499
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
++ +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 500 -----NFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKG 554
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL ME+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I
Sbjct: 555 ARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIE 614
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++G
Sbjct: 615 IEDDGTIKIAATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEG 673
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
L+H+S+++ + V +V+D + +GQ + ++ + D +G I+LS+K A +P
Sbjct: 674 LVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTP 721
>gi|417245318|ref|ZP_12039057.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 9.0111]
gi|386210639|gb|EII21113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 9.0111]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGRERDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|357976253|ref|ZP_09140224.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. KC8]
Length = 767
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/710 (42%), Positives = 448/710 (63%), Gaps = 21/710 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K+E + G + +TLETG++AR ANGAVV + ET VL VT+++ SV+ DF PLTV Y
Sbjct: 6 KQEIQWGGKTLTLETGRVARQANGAVVATLGETVVLCAVTAAR--SVKEGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK F+ G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+ VLS DG+
Sbjct: 64 QEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVICQVLSYDGE 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G+FI+NPT +++ +L+LV A T
Sbjct: 124 NEPDILAMIAASAALTLSGVPFMGPIGAARVGYQDGEFILNPTDAQVAEGELDLVVAGTH 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ +A+E+SE+ + + H E K L+ I LAE+A K + +
Sbjct: 184 DAVMMVESEAKELSEEIMLGAVMFGHREMQKVLDAIIGLAEQAAKDPWDLAAQPDTSAMK 243
Query: 297 EKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
K+ L I A + +K R +AL++ K A + ++ + V K V +
Sbjct: 244 TKLKKLVGKEITAAYK--LTNKSARSDALNEARAKAKVAFADASPQDQM-VANKLVKKLE 300
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R I+ +G R+DGR VRPI LP HGS+LF+RG+TQ + T TLG
Sbjct: 301 AEIVRTAILKDGRRIDGRDTKTVRPIEATVHFLPRAHGSALFTRGETQTIATCTLGTKDA 360
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++ L G + FMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP + +F
Sbjct: 361 EQMIDGLTGLRYENFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHGVLPTKEEF 420
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+R+ S++ S+GS+SMATVCGGS+ALMDAG+P++ V+G+++GL+ E KD
Sbjct: 421 PYTIRLTSDITESNGSSSMATVCGGSLALMDAGVPIKRPVSGIAMGLILEG-------KD 473
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR IL
Sbjct: 474 FAVLSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITEEIMKVALEQASGGRAHIL 533
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + + R + ++PR+ T+ + +R +IG G + R+I +TG ++ + DGT
Sbjct: 534 GEMAKALDHTREELSAHAPRIETMNVPKEKIRDVIGTGGKVIREIVAQTGAKVDIEDDGT 593
Query: 656 LTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
+ + + S EK+ ++IIG E EVG IY G V ++ ++GAFV F GG+ GL+HV
Sbjct: 594 VKI---SSSDPEKIEAAKNWIIGIVAEAEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHV 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
SE+ +E V++VSDV+S GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 651 SEIKNERVAKVSDVLSEGQEVKVKVLEVDQRGKVRLSMRVVDQETGAELE 700
>gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
Length = 740
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 30 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 89
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 90 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 149
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 150 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 209
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 210 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 269
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 270 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 325
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 326 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 382
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 383 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 442
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 443 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 502
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 503 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 555
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 556 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 615
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 616 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 674
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 675 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 719
>gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase [Escherichia coli 536]
gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O1]
gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
200-1]
gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
45-1]
gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
185-1]
gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
gi|386640768|ref|YP_006107566.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
83972]
gi|387618462|ref|YP_006121484.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
str. NRG 857C]
gi|422357251|ref|ZP_16437918.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
110-3]
gi|422362338|ref|ZP_16442909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
153-1]
gi|422370373|ref|ZP_16450766.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
16-3]
gi|422376587|ref|ZP_16456836.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
60-1]
gi|422380001|ref|ZP_16460182.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
57-2]
gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536]
gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O1]
gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
185-1]
gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
200-1]
gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
45-1]
gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
83972]
gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
str. NRG 857C]
gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
110-3]
gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
153-1]
gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
16-3]
gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
57-2]
gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
60-1]
gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDENLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|432467485|ref|ZP_19709564.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE205]
gi|433074424|ref|ZP_20261066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE129]
gi|433121736|ref|ZP_20307397.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE157]
gi|433184887|ref|ZP_20369125.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE85]
gi|430991971|gb|ELD08370.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE205]
gi|431584822|gb|ELI56797.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE129]
gi|431639767|gb|ELJ07616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE157]
gi|431703499|gb|ELJ68186.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE85]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATGGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
UMN026]
gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
198-1]
gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
69-1]
gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
gi|387608888|ref|YP_006097744.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
UMN026]
gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
198-1]
gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
69-1]
gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
Length = 734
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase [Shigella flexneri 5 str. 8401]
gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
gi|415787444|ref|ZP_11494072.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa14]
gi|415811201|ref|ZP_11503551.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
gi|415820752|ref|ZP_11509859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1180]
gi|415857266|ref|ZP_11532040.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
str. 2457T]
gi|416266918|ref|ZP_11641756.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
74-1112]
gi|417123540|ref|ZP_11972450.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0246]
gi|417197543|ref|ZP_12016477.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0522]
gi|417210773|ref|ZP_12021190.1| polyribonucleotide nucleotidyltransferase [Escherichia coli JB1-95]
gi|417296033|ref|ZP_12083280.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 900105
(10e)]
gi|417593566|ref|ZP_12244257.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2534-86]
gi|417703844|ref|ZP_12352948.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
gi|417709255|ref|ZP_12358280.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
gi|417714221|ref|ZP_12363179.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
gi|417719068|ref|ZP_12367959.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
gi|417724899|ref|ZP_12373695.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
gi|417730126|ref|ZP_12378817.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
gi|417735039|ref|ZP_12383686.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2747-71]
gi|417740035|ref|ZP_12388607.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
4343-70]
gi|417745079|ref|ZP_12393600.1| pnp [Shigella flexneri 2930-71]
gi|417829643|ref|ZP_12476188.1| pnp [Shigella flexneri J1713]
gi|418258673|ref|ZP_12881869.1| pnp [Shigella flexneri 6603-63]
gi|419198868|ref|ZP_13742163.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC8A]
gi|419205008|ref|ZP_13748181.1| pnp [Escherichia coli DEC8B]
gi|419211619|ref|ZP_13754688.1| pnp [Escherichia coli DEC8C]
gi|419217558|ref|ZP_13760554.1| pnp [Escherichia coli DEC8D]
gi|419223312|ref|ZP_13766226.1| pnp [Escherichia coli DEC8E]
gi|419228763|ref|ZP_13771606.1| pnp [Escherichia coli DEC9A]
gi|419234189|ref|ZP_13776958.1| pnp [Escherichia coli DEC9B]
gi|419239735|ref|ZP_13782443.1| pnp [Escherichia coli DEC9C]
gi|419245232|ref|ZP_13787866.1| pnp [Escherichia coli DEC9D]
gi|419251092|ref|ZP_13793661.1| pnp [Escherichia coli DEC9E]
gi|419256770|ref|ZP_13799273.1| pnp [Escherichia coli DEC10A]
gi|419263071|ref|ZP_13805479.1| pnp [Escherichia coli DEC10B]
gi|419274524|ref|ZP_13816814.1| pnp [Escherichia coli DEC10D]
gi|419286077|ref|ZP_13828241.1| pnp [Escherichia coli DEC10F]
gi|419393322|ref|ZP_13934124.1| pnp [Escherichia coli DEC15A]
gi|419398424|ref|ZP_13939187.1| pnp [Escherichia coli DEC15B]
gi|419403706|ref|ZP_13944426.1| pnp [Escherichia coli DEC15C]
gi|419408864|ref|ZP_13949550.1| pnp [Escherichia coli DEC15D]
gi|419414412|ref|ZP_13955050.1| pnp [Escherichia coli DEC15E]
gi|419877665|ref|ZP_14399213.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9534]
gi|419884137|ref|ZP_14405125.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9545]
gi|419892520|ref|ZP_14412539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9570]
gi|419894284|ref|ZP_14414202.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9574]
gi|419903927|ref|ZP_14422940.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9942]
gi|419909652|ref|ZP_14428191.1| polynucleotide phosphorylase [Escherichia coli O26:H11 str.
CVM10026]
gi|419922586|ref|ZP_14440598.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
541-15]
gi|420088970|ref|ZP_14600818.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9602]
gi|420094607|ref|ZP_14606186.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9634]
gi|420098955|ref|ZP_14610202.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9455]
gi|420105864|ref|ZP_14616297.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9553]
gi|420118191|ref|ZP_14627524.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10021]
gi|420118592|ref|ZP_14627913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10030]
gi|420135148|ref|ZP_14643242.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9952]
gi|420333133|ref|ZP_14834778.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
K-1770]
gi|420343567|ref|ZP_14845032.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-404]
gi|420368682|ref|ZP_14869423.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
gi|420382217|ref|ZP_14881655.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
225-75]
gi|424746855|ref|ZP_18175072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CFSAN001629]
gi|424757935|ref|ZP_18185661.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CFSAN001630]
gi|424770295|ref|ZP_18197501.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CFSAN001632]
gi|424839418|ref|ZP_18264055.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5a
str. M90T]
gi|425381441|ref|ZP_18765440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1865]
gi|123342480|sp|Q0T0B7.1|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611324|sp|Q83JG0.5|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str.
8401]
gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
str. 2457T]
gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
74-1112]
gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa14]
gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1180]
gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
4343-70]
gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2747-71]
gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71]
gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
gi|335574040|gb|EGM60378.1| pnp [Shigella flexneri J1713]
gi|345333887|gb|EGW66333.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2534-86]
gi|378044469|gb|EHW06886.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC8A]
gi|378046203|gb|EHW08583.1| pnp [Escherichia coli DEC8B]
gi|378050814|gb|EHW13141.1| pnp [Escherichia coli DEC8C]
gi|378060147|gb|EHW22346.1| pnp [Escherichia coli DEC8D]
gi|378063506|gb|EHW25675.1| pnp [Escherichia coli DEC8E]
gi|378070356|gb|EHW32435.1| pnp [Escherichia coli DEC9A]
gi|378074964|gb|EHW36992.1| pnp [Escherichia coli DEC9B]
gi|378080737|gb|EHW42694.1| pnp [Escherichia coli DEC9C]
gi|378088229|gb|EHW50084.1| pnp [Escherichia coli DEC9D]
gi|378091510|gb|EHW53340.1| pnp [Escherichia coli DEC9E]
gi|378098086|gb|EHW59829.1| pnp [Escherichia coli DEC10A]
gi|378103360|gb|EHW65029.1| pnp [Escherichia coli DEC10B]
gi|378114249|gb|EHW75806.1| pnp [Escherichia coli DEC10D]
gi|378127213|gb|EHW88603.1| pnp [Escherichia coli DEC10F]
gi|378235576|gb|EHX95644.1| pnp [Escherichia coli DEC15A]
gi|378241358|gb|EHY01325.1| pnp [Escherichia coli DEC15B]
gi|378245961|gb|EHY05898.1| pnp [Escherichia coli DEC15C]
gi|378253425|gb|EHY13303.1| pnp [Escherichia coli DEC15D]
gi|378257677|gb|EHY17514.1| pnp [Escherichia coli DEC15E]
gi|383468470|gb|EID63491.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5a
str. M90T]
gi|386146931|gb|EIG93376.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0246]
gi|386188848|gb|EIH77637.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0522]
gi|386195377|gb|EIH89612.1| polyribonucleotide nucleotidyltransferase [Escherichia coli JB1-95]
gi|386259477|gb|EIJ14951.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 900105
(10e)]
gi|388339170|gb|EIL05556.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9534]
gi|388347672|gb|EIL13332.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9570]
gi|388356030|gb|EIL20828.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9545]
gi|388364277|gb|EIL28141.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9574]
gi|388368859|gb|EIL32480.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9942]
gi|388372718|gb|EIL36131.1| polynucleotide phosphorylase [Escherichia coli O26:H11 str.
CVM10026]
gi|388395987|gb|EIL57121.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
541-15]
gi|391247623|gb|EIQ06870.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
K-1770]
gi|391263831|gb|EIQ22831.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-404]
gi|391298851|gb|EIQ56838.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
225-75]
gi|391322011|gb|EIQ78718.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
gi|394389038|gb|EJE66230.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9602]
gi|394395619|gb|EJE72046.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9634]
gi|394400983|gb|EJE76844.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10021]
gi|394417866|gb|EJE91578.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9553]
gi|394420597|gb|EJE94119.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9952]
gi|394423906|gb|EJE97117.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9455]
gi|394432970|gb|EJF05033.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10030]
gi|397895269|gb|EJL11701.1| pnp [Shigella flexneri 6603-63]
gi|408294581|gb|EKJ12963.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1865]
gi|421942699|gb|EKU00022.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CFSAN001632]
gi|421947475|gb|EKU04547.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CFSAN001629]
gi|421948975|gb|EKU05972.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CFSAN001630]
Length = 711
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
Length = 734
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 713
>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
Length = 778
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/713 (42%), Positives = 444/713 (62%), Gaps = 27/713 (3%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD--- 108
G + + K E+ + +TLETG+IAR A+ AV+ ET VL VT++K SV+D
Sbjct: 5 GKSMFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKDGQD 62
Query: 109 FLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMA 168
F PLTV YQEK A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+A
Sbjct: 63 FFPLTVHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIA 122
Query: 169 SVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDL 228
VLS DG+ +PDI+A A SAAL LS +P+ GPIG R+G G++ +NP+++E DL
Sbjct: 123 QVLSFDGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDL 182
Query: 229 NLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKL 288
+LV A T +M++ +A+E+SE + + AH A K + I LAE+A K E
Sbjct: 183 DLVVAATGNAVMMVESEAKELSEDVMLGAVMFAHDAAKKVVNAIIDLAEQAAKDPWE--- 239
Query: 289 SMISEQTL----EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL-EEECD 341
M ++ L +K++ L I A + TD S R AL++ K EEE D
Sbjct: 240 -MAAQDDLGGLKKKLTKLIGKDIAAAYKLTDKS----ARSNALNEARAKAKAFFAEEELD 294
Query: 342 EESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRG 401
+++ K + ++R I+ +G R+DGR ++RPI G LP HGS+LF+RG
Sbjct: 295 AQTVMAGIKLTKKLEAEIVRTAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRG 354
Query: 402 DTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTL 461
+TQ +CT TLG Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG L
Sbjct: 355 ETQAICTTTLGTKDAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKL 414
Query: 462 AEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSV 521
A +AL VLP +++FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++
Sbjct: 415 AWRALHPVLPSKDEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAM 474
Query: 522 GLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDII 581
GL+ E KDY +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I
Sbjct: 475 GLILEG-------KDYAVISDILGDEDHLGDMDFKVAGTENGITTMQMDIKVAGITQEIF 527
Query: 582 CECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKI 641
L A +GR IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I
Sbjct: 528 EVALRQAKEGRAHILGEMSKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREI 587
Query: 642 EEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
ETG ++ + D + ++ + + + +K I E EVG IY G V ++ ++GAFV
Sbjct: 588 VAETGAKVDIDDEGIIKISSSDTAQIEAAKKWILGIVEEAEVGKIYSGKVVNIVDFGAFV 647
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
F GG+ GL+HVSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 648 NFMGGKDGLVHVSEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 700
>gi|388259472|ref|ZP_10136645.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio sp. BR]
gi|387936910|gb|EIK43468.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio sp. BR]
Length = 708
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/701 (43%), Positives = 439/701 (62%), Gaps = 25/701 (3%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEK 119
++F+ G++ +TLETG+IAR A GAV+ M E VL TV +K S +DF PL+V YQEK
Sbjct: 6 KKFQYGNQTVTLETGRIARQATGAVMATMGEVSVLCTVVGAKQASPGQDFFPLSVHYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y++REG P E+E L R+IDRPIRPLFP GF +EVQV+ +V+S+D + DP
Sbjct: 66 SYAAGRIPGGYLKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVVCTVVSTDKQYDP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREK 238
DI+A TSAAL +S IP+ GPIG R+G + +I+NP+ +L S+L++V A T++
Sbjct: 126 DIVAMIGTSAALAISGIPFNGPIGGARVGYTQEEGYILNPSFKQLETSELDMVVAGTKDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+ E + + AH E ++ + LA AGK + E+ Q +
Sbjct: 186 VLMVESEAKELPEDIMLGAVLYAHQEMQAVVQACVELARDAGKPRWEW-------QPVAV 238
Query: 299 VSNLAEAHIEAVFTDP---SYSKFERGEALDKIGQDVKKALEEECDEES---LQVLPKAV 352
+ L +A ++ F D +Y ++ + D++G+ +A+ E E + +
Sbjct: 239 KAGLTDALLKG-FGDSIGMAYRITDKAKRYDRLGELRNQAVAELATEATGFTADEVKAEF 297
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
V R++R RI+A R+DGR VRPI E G L HGS+LF+RG+TQ L TLG
Sbjct: 298 GMVEYRLVRSRIVAGEPRIDGRDNKTVRPIQVEVGVLGKAHGSALFTRGETQALVVATLG 357
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQ ++ L G FMLHY+FPPF + E G+ RRE+GHG LA + + +VLP
Sbjct: 358 NARDAQIIDFLEGSKKDAFMLHYNFPPFSVGECGRMGATGRREIGHGRLARRGVTSVLPK 417
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E+DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E +
Sbjct: 418 ESDFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEAN---- 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE A R
Sbjct: 474 ---GFAVLTDILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAAR 530
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M + + + R+ N+PR T+K D +R +IG GA R I EETG I +
Sbjct: 531 LHILGEMNKVLPSSRSVVSENAPRFETIKIHPDKIRDIIGKGGATIRAITEETGSSIDID 590
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A N ++ + +V I+ E E+G IY+G V + ++GAFV F G+ GL+
Sbjct: 591 DDGTVKIYADNNDALQAAILRVMGIVA-EAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLV 649
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
H+S+++ E V+ VSD + GQ + ++C+ D RG IKLS+K
Sbjct: 650 HISQIADERVNSVSDYLKEGQIVKVKCLDVDQRGRIKLSIK 690
>gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. EDL933]
gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11]
gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase [Escherichia coli 55989]
gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. 12009]
gi|291284540|ref|YP_003501358.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. CB9615]
gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
107-1]
gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
119-7]
gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
84-1]
gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
182-1]
gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
21-1]
gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
124-1]
gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
78-1]
gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
gi|387884350|ref|YP_006314652.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
Xuzhou21]
gi|415861790|ref|ZP_11535400.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
85-1]
gi|415875685|ref|ZP_11542364.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
79-10]
gi|422353706|ref|ZP_16434455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
117-3]
gi|427806367|ref|ZP_18973434.1| polynucleotide phosphorylase [Escherichia coli chi7122]
gi|427810958|ref|ZP_18978023.1| polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli]
gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli O157:H7 str. EDL933]
gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli]
gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11]
gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. 12009]
gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. CB9615]
gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
84-1]
gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
182-1]
gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
21-1]
gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
119-7]
gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
107-1]
gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
124-1]
gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
78-1]
gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
85-1]
gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
117-3]
gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
gi|342929205|gb|EGU97927.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
79-10]
gi|386797808|gb|AFJ30842.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
Xuzhou21]
gi|412964549|emb|CCK48478.1| polynucleotide phosphorylase [Escherichia coli chi7122]
gi|412971137|emb|CCJ45792.1| polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli]
Length = 734
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|422020991|ref|ZP_16367505.1| polynucleotide phosphorylase/polyadenylase [Providencia sneebia DSM
19967]
gi|414099896|gb|EKT61529.1| polynucleotide phosphorylase/polyadenylase [Providencia sneebia DSM
19967]
Length = 707
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/693 (41%), Positives = 446/693 (64%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V T V K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +E+Q++A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFVNEIQIIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL LS L+LV A T L
Sbjct: 128 IVAMIGASAALALSGVPFNGPIGAARVGFIDDQYVLNPTADELKLSRLDLVVAGTESAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + + L + AGK+K +++ +++ +K++
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQVVINEINELVKLAGKEKWDWQPESVNQALRDKIA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE+ + + K ER +D I ++V A+ E + + + + K+V+
Sbjct: 248 QLAESRMGDAYR--ITEKQERYAQVDLIKEEVTAAILAEDENIDASEVADILANLEKQVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R+I R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVIRGEPRIDGREKDMVRALDVRTGLLPRTHGSALFTRGETQALVTATLGTERDAQVI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P DFPYTV
Sbjct: 366 DQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNHADFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGN-------DFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGIME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I+ PR + +PR+ T++ + D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QAINGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + +++ I E+EVG IY+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGLKAKEAIRRIEEITA-EVEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 RVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|377577026|ref|ZP_09806009.1| polyribonucleotide nucleotidyltransferase [Escherichia hermannii
NBRC 105704]
gi|377541554|dbj|GAB51174.1| polyribonucleotide nucleotidyltransferase [Escherichia hermannii
NBRC 105704]
Length = 714
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/708 (42%), Positives = 444/708 (62%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKNSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK + +++ ++E
Sbjct: 181 GTEGAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V+ LAEA + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 ALNSRVAALAEARLSDAYRITD----KQERYSQIDAIKSDVIAALQAEQAEGDVLDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 NDILHAIE---KNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTARDAQSLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
++AV+P FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VMAVMPDAERFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D ++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L
Sbjct: 474 EGD-------NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILSVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGDKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + + Q++ ++ + D +G I+LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMNQEVPVKVLEVDRQGRIRLSIK 693
>gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
Length = 745
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 312/708 (44%), Positives = 448/708 (63%), Gaps = 31/708 (4%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E R +TLETG+IAR A+GAV+ ET VL+TV + DF PLTV+YQE
Sbjct: 6 RKTIEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP Y +REG P E+E LV R+IDRPIRPLF GF +E QV+ +VL D + D
Sbjct: 66 KTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PD++ A SAAL +S +P+ GPIG R+G I G+ ++NPT+D++ SDL+LV A T++
Sbjct: 126 PDVLGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPTVDQIPGSDLDLVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E+SE+ + L AH ++ I LAE A K+ +++ S+ +
Sbjct: 186 LMMVESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAKEPFDFQAEDHSD-VVTS 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR-- 356
+ L I+A +T P K++R +D + AL + DE P+ VD+ +
Sbjct: 245 IKKLVGEDIKAAYTHPG--KYDRRSGVDAAKKTAAAALVK-TDEN-----PEGVDSSKFA 296
Query: 357 -------KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
V+R+ II RVDGR LD+VR I E G LP HGS+LF+RG+TQ L
Sbjct: 297 AAFKECEADVLRRDIIENAHRVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +
Sbjct: 357 TLGTGEDEQYIDSLQGTYKESFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + DFPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL V+G+++GL+ E P
Sbjct: 417 LPSKEDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILE--P 474
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
S GE + IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A
Sbjct: 475 S-GE---FAILSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITKEIMKQALTQAS 530
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GRL ILD M + + APR + ++P++ T+K D +R +IG G + R+I E+TG +I
Sbjct: 531 AGRLHILDEMSKAMDAPRAELGEHAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKI 590
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+ DGT+ V A ++ EK+ +I I E EVG IY G V V ++GAFV F G
Sbjct: 591 DIGDDGTIKVAANDQ---EKIDAAKAWIQSIASEPEVGTIYSGKVVKVVDFGAFVNFFGA 647
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+HVS+++ E V+ +DV+S GQ++ ++ +G D RG KLS+K V
Sbjct: 648 KDGLVHVSQIALERVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVV 695
>gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
str. 2457T]
gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase [Escherichia coli O26:H11 str. 11368]
gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase [Escherichia coli O111:H- str. 11128]
gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
145-7]
gi|384544761|ref|YP_005728825.1| polynucleotide phosphorylase [Shigella flexneri 2002017]
gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T]
gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. 11368]
gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H- str. 11128]
gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017]
gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
145-7]
Length = 734
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|440286024|ref|YP_007338789.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium strain FGI 57]
gi|440045546|gb|AGB76604.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium strain FGI 57]
Length = 711
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + + L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIREINELVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 ELDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + + Q++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMNQEVPVKVLEVDRQGRIRLSIK 690
>gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC
8739]
gi|189037305|sp|B1IQV7.1|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
8739]
Length = 711
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|417845955|ref|ZP_12491970.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21639]
gi|341953662|gb|EGT80164.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21639]
Length = 709
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 442/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEASLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ ISAPR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAISAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
115-1]
gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
115-1]
Length = 734
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|429083698|ref|ZP_19146727.1| Polyribonucleotide nucleotidyltransferase [Cronobacter condimenti
1330]
gi|426547317|emb|CCJ72768.1| Polyribonucleotide nucleotidyltransferase [Cronobacter condimenti
1330]
Length = 719
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 449/708 (63%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQEELKSSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V LAE+ + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 ALNARVKALAESRLSDAYRITD----KQERYSQIDAIKADVISALQAEQAEGDALDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R+++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 GDILHAIE---KNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 474 E-----GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 693
>gi|432486934|ref|ZP_19728844.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE212]
gi|432672263|ref|ZP_19907787.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE119]
gi|433175058|ref|ZP_20359572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE232]
gi|431014621|gb|ELD28329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE212]
gi|431208493|gb|ELF06706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE119]
gi|431689828|gb|ELJ55323.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE232]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNAHVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
ATCC BAA-835]
gi|226702592|sp|B2UNA9.1|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
ATCC BAA-835]
Length = 714
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/696 (41%), Positives = 443/696 (63%), Gaps = 9/696 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQ 120
E +G+ IT+ETGK+AR A+GAVV+ +T VL TV S +K + F PL+V+Y+EK
Sbjct: 7 ECNVGTNPITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEYKEKA 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G+ P Y +REG P E+E+L R+ DRP+RP+FP G++++ QV+ +LS+DG+ +PD
Sbjct: 67 AAAGMFPGGYFKREGRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVITLLLSADGENEPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ N SAA ++SD+P+ P+G +R+GRI GQF++NPT + S L+LV+A T+++ +
Sbjct: 127 ILSINGASAACVVSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHSQLDLVFAGTKDQVI 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MI+ A E+ E+D A LR+A E Q L GK+K+ Y+L + + LE
Sbjct: 187 MIEGSANELPEEDFIAALRVAQENVKVICEKQEELRAVCGKEKRAYELCLAKPELLEIGY 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+A IE P SK ER + + + +V+ A++E E + + + + ++K+
Sbjct: 247 EIAGDRIEEAIYAP--SKVERQKKVGALRDEVEAAIKERHPEATDFDVEQVFEYIQKKAF 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNL-PILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
R I+ + R DGR L ++RP+ E L P++HGS++F+RG+T LC TL E Q
Sbjct: 305 RISIMEKDKRADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEERQY 364
Query: 420 LESLVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
+++ G KRF+LHY+FPPF + + G+ G NRRE+GHG LAE+++ V+P E +FPY
Sbjct: 365 MDNYTGSVNEKRFILHYNFPPFSVGDTGRFGGQNRREIGHGALAERSIAPVVPGEQEFPY 424
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
+RV+SE+M S+GSTSMA+VC G+M+L+ AG+PL+ VAG+SVGLV+E + EI Y+
Sbjct: 425 AIRVSSEIMESNGSTSMASVCAGTMSLLAAGVPLKRPVAGISVGLVTEQN-DQHEITSYK 483
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
L DI+G ED GDMDFK+ GT GVT QLD+K GIPL I+ E + A GR +L
Sbjct: 484 TLLDIIGSEDFYGDMDFKLCGTSEGVTGYQLDLKLPGIPLSILEEAIHVAKAGRTDVLKV 543
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I+AP Q N+PR+ T K D + LIGP G + I+ E+G I++ DGT+
Sbjct: 544 MNEAIAAP-AQMSPNAPRIETTKIPADRIGELIGPGGKNIKAIQAESGADINIEEDGTVH 602
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ A + +++ LE V + + IE+G +Y G + S +GAF+E G+ GL+H+SEL+
Sbjct: 603 IYAAKQEGLDRALELVTRMF-KTIEIGELYTGKIVSTTTFGAFMEVLPGKDGLIHISELA 661
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
++ DVVSVG ++ +CIG D +G +K+S++A
Sbjct: 662 EGRTAKTEDVVSVGDVVTAKCIGIDDKGRVKMSIRA 697
>gi|384261348|ref|YP_005416534.1| Polyribonucleotide nucleotidyltransferase [Rhodospirillum
photometricum DSM 122]
gi|378402448|emb|CCG07564.1| Polyribonucleotide nucleotidyltransferase [Rhodospirillum
photometricum DSM 122]
Length = 710
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/719 (42%), Positives = 444/719 (61%), Gaps = 15/719 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
+ + F++E E G R + LETGK+AR A+GAV+ + +T VL T ++ S DF PLTV
Sbjct: 3 MFKVFRKEIEWGGRTLVLETGKVARQADGAVMASLGDTTVLCTAVGARKASAFDFFPLTV 62
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK FA G IP + +REG P ERE LV R+IDRPIRPLF G+ E QV+A+VL D
Sbjct: 63 NYQEKTFAAGKIPGGFFKREGRPSERETLVSRLIDRPIRPLFVEGYRCETQVVATVLCHD 122
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI++ SAAL LS +P+ GPIG R+G I G F++NPT ++ + S L+LV A
Sbjct: 123 LENDPDIVSMIGASAALTLSGLPFLGPIGAARVGMIDGAFVLNPTREQQTRSCLDLVVAG 182
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
TRE LM++ +A+E++E+ + + H + I LAE+ ++ + + +
Sbjct: 183 TREGVLMVESEAKELTEQQMLDAVMFGHESYQPVINAIIELAEQCAREPRAVEPPSPALV 242
Query: 295 TLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+E KV LAEA + A + + K R + + + V AL E+ ++ + + K ++
Sbjct: 243 AIEDKVRALAEAGLRAAYAEA--DKMARHDRVSAVKDHVVAALAEDPAKDLVAGVFKDLE 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
K ++R I+ G R+DGR VRPI G LP HGS+LF+RG+TQ L TLG
Sbjct: 301 ---KEIVRGAILDTGRRIDGRDTRTVRPIEAIVGVLPRAHGSALFTRGETQALVVTTLGT 357
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +AL ++PP+
Sbjct: 358 GQDEQIIDALEGEYRENFMLHYNFPPYSVGETGRLGSPGRREIGHGKLAWRALHPMMPPK 417
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYTVR+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E D
Sbjct: 418 SEFPYTVRIVSEITESNGSSSMATVCGSSLALMDAGVPLKAPVAGIAMGLIKEED----- 472
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK I +I+ L+ A GR
Sbjct: 473 --RFAVLSDILGDEDHLGDMDFKVAGTAQGVTSLQMDIKITSITREIMAIALDQARDGRT 530
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + + R +PR+ T+K +R +IG G + R+I E TG +I +
Sbjct: 531 HILGEMAKALGDARDGLSDFAPRITTIKIPPQKVREVIGSGGKVIREITETTGTKIDIED 590
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + ++ ++ + I+ E E+G IY G V V ++GAFV F G + GL+H
Sbjct: 591 DGTIKIASADGDAAQRAVDWIRGIVA-EPEMGAIYIGKVVKVMDFGAFVNFLGTRDGLVH 649
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVP 771
+SELS E V +V+DV +VG Q+ ++CIG D RG +KLS+K V AD+ V P
Sbjct: 650 ISELSSERVRKVTDVTNVGDQVKVKCIGFDDRGKVKLSMKQVDQVTGADLSAVATEPAP 708
>gi|342904999|ref|ZP_08726793.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21621]
gi|341952098|gb|EGT78639.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21621]
Length = 709
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 442/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQLDTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P ++FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G +YKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAVYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
Bem]
gi|257096691|sp|B5EI63.1|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
Bem]
Length = 696
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/692 (43%), Positives = 428/692 (61%), Gaps = 15/692 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
E + IT+ETGKIA+ A+GAV++ +T VL T + K + F PLTV+YQEK +A
Sbjct: 8 ECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYA 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP ++ +REG P + E L R+IDRPIRPLFP F ++ Q+MA+V+S+D DP I+
Sbjct: 68 GGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPGIL 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
+ SAALM+SD+P+ GPI +++GR+ GQFI NPT ++ SDL +V A +++ LM+
Sbjct: 128 SMIGASAALMVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLEIVIAASQDAILMV 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+SE DL + H L Q+ LA+K G K+E +++E +VS L
Sbjct: 188 EGSACEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTSKREIPAPVVNEALKARVSAL 247
Query: 303 A-EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
A E +AV +K ER A+D I + AL E E S + + ++ + ++R
Sbjct: 248 AKEGMKQAVRIK---TKVERHLAIDAIADETVAALSAEF-EGSEKEIKGFIEDLEYDLVR 303
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ II +G R+DGR +R I E LP HGS+LF+RG+TQ + TLG + QR++
Sbjct: 304 EHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRID 363
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
SL G K+FMLHY+FPP+ + E R+ RRE+GHG LAE+AL VLP +DFPYT+R
Sbjct: 364 SLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIR 423
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ S++ S+GS+SMATVCGGS+++MDAGIP++ VAG+++GL+ E D D+ IL+
Sbjct: 424 IVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGD-------DFAILS 476
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L A GR+ IL M +
Sbjct: 477 DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAK 536
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVA 660
I A R +PR+ T+ D +R +IG G R + E TG I + D G + + +
Sbjct: 537 TIGASRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIAS 596
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + ++ + + E E G +Y G V + E+GAFVE G GL+HVSEL E
Sbjct: 597 TNKEACDLAIKMIRNLTA-EAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTER 655
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V VSD++ G ++ ++CIG D +G IKLS K
Sbjct: 656 VKNVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687
>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
str. 'morsitans']
gi|123725447|sp|Q2NW19.1|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
str. 'morsitans']
Length = 705
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/714 (41%), Positives = 449/714 (62%), Gaps = 19/714 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G TLETG +AR A AV+ MD+T V TV +K + + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTFTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EV V+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT EL+ S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A+ +SE + + H + ++ +L +AGK K +++ ++
Sbjct: 181 GTQNAVLMVESEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAEAGKPKWQWQAQDVNA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSY---SKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
+V+ LAE+ + SY K ER A+D I DV +AL + + + +
Sbjct: 241 GLQARVAELAESRL-----GDSYRITEKQERYAAVDAIKADVVEALTGQDETLDVGEIKD 295
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ + K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 296 ILGALEKSVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L G T RF+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+
Sbjct: 356 LGTERDAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVM 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 416 PNASEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
++ +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A
Sbjct: 474 -----NFVVLSDILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITHEIMQVALNQAKG 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R+ IL MER IS+PR +PR+ T+K +D ++ +IG G++ R + EETG I
Sbjct: 529 ARMHILGVMERAISSPRGNISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIE 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V A + + +++ I EIEVG IY G VT + ++GAF GG++G
Sbjct: 589 IEDDGTVKVAATDGDKARHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFFAIGGGKEG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEADV 762
L+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P +A V
Sbjct: 648 LVHISQIADKRVEKVADYLELGQEVPVKVLEVDRQGRVRLSIKEASAPSQDAVV 701
>gi|429118791|ref|ZP_19179538.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
680]
gi|426326696|emb|CCK10275.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
680]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 447/708 (63%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
++YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V LAE+ + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 ALNARVKALAESRLSDAYRITD----KQERYSQIDAIKADVIAALQAEQAEGDALDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 GDILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK P I+ L
Sbjct: 474 E-----GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEASPKRIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 693
>gi|340000841|ref|YP_004731725.1| polynucleotide phosphorylase [Salmonella bongori NCTC 12419]
gi|339514203|emb|CCC31966.1| polynucleotide phosphorylase [Salmonella bongori NCTC 12419]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINEQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + + L E + L +
Sbjct: 241 ALNARVAQLAESRLSDAYRITD----KQERYAQVDVIKSETIETLMAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|425306956|ref|ZP_18696636.1| polyribonucleotide nucleotidyltransferase [Escherichia coli N1]
gi|408226334|gb|EKI49981.1| polyribonucleotide nucleotidyltransferase [Escherichia coli N1]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNVRVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|420349120|ref|ZP_14850501.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 965-58]
gi|391267306|gb|EIQ26243.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 965-58]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ + ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQAVPVKVLEVDRQGRIRLSIK 690
>gi|365895014|ref|ZP_09433141.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3843]
gi|365424228|emb|CCE05683.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3843]
Length = 722
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/707 (42%), Positives = 442/707 (62%), Gaps = 21/707 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPL 112
+ T E + G R + LETGKIAR A+GAV+ ET VL+TV ++K + V DFLPL
Sbjct: 1 MFTTHSVEIDWGGRPLKLETGKIARQADGAVIATYGETVVLATVVAAKAPREGV-DFLPL 59
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TVDYQEK +A G IP Y +REG P E+E LV R+IDRPIRPLF + +E QV+ + LS
Sbjct: 60 TVDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIITTLS 119
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
D + DPD++A A SAAL LS +P+ GPIG R+G ++I+NPT+DE++ + L+LV
Sbjct: 120 HDMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVV 179
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T + LM++ +A+E++E + + H + I LAEKA K+ +E +++I
Sbjct: 180 AGTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTIID 237
Query: 293 EQTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
LEK + +AE + + P K ER A+ + V E E L +
Sbjct: 238 NGELEKEMLGIAEQELRKAYAIPV--KQERYAAVGAAKEKVMAHFFPEGQEPKYDKL-RV 294
Query: 352 VDTVRK---RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
D ++ +++R I+ G R+DGR + VR I CE G LP HGS+LF+RG+TQ L
Sbjct: 295 ADVFKELEAKIVRWNILDTGRRIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVV 354
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+
Sbjct: 355 TTLGTGEDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHP 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLPP ++FPYTVRV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+
Sbjct: 415 VLPPHHEFPYTVRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLIL--- 471
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
E K Y +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A
Sbjct: 472 ----EDKRYAVLSDILGDEDHLGDMDFKVAGTEGGITSLQMDIKIEGITEEIMRVALAQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR+ IL M + ++A R + +PR+ T K D +R +IG G + R+I E+TG +
Sbjct: 528 RDGRIHILGEMAKALTAARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK 587
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
+++ DGT+ V + + M+ ++ + I + EVG IY GVV V E+GAFV F G +
Sbjct: 588 VNIEDDGTVKVASNDGEAMKAAIKWIKS-IASDPEVGQIYDGVVVKVMEFGAFVNFFGSR 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ + V + +DVV G ++ ++ +G D RG +LS+KAV
Sbjct: 647 DGLVHISQLADKRVQKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
116-1]
gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
116-1]
Length = 734
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLQMGQEVLVKVLEVDRQGRIRLSIK 713
>gi|366160415|ref|ZP_09460277.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
TW09308]
gi|432373741|ref|ZP_19616773.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE11]
gi|430893926|gb|ELC16228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE11]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDVMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase [Haemophilus influenzae 86-028NP]
gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
gi|81336747|sp|Q4QNV7.1|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
86-028NP]
gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
Length = 709
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAVKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISESKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575939|sp|Q3ABA6.1|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 731
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/726 (42%), Positives = 459/726 (63%), Gaps = 33/726 (4%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFL 110
G ++LE +E I R + L GK+A A+G+V++ +T VL T T SK DF
Sbjct: 4 GRQILE---KEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFF 60
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTVDY+E+ +A G IP +++REG P E+ +L R+IDRPIRPLFP GF ++V ++A+V
Sbjct: 61 PLTVDYEERFYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATV 120
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
LS + P+I A N SAAL LS +P+ GPIG + +G + + ++NPT+++ S L+L
Sbjct: 121 LSVNQDNPPEIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHL 180
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEA---VKYLEPQIRLAEKAGKQKKEYK 287
V A TR+ +M++ A+E+ E+ + + H E V ++E A K G K+ K
Sbjct: 181 VVAGTRDAVMMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKE--K 238
Query: 288 LSMISEQTLE-KVSNLAEAH------IEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC 340
+ ++ E+ E K + AEA+ IE + + ++K ER E L+ + +++ E
Sbjct: 239 MEVVVEEKAELKEAVTAEAYPLLKEAIEKIIAE-KFNKQERDEYLENLKKELTTKFLETY 297
Query: 341 DEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSR 400
EE L + +D+++K ++R++I+ EG+R+DGR+ DEVRPI+CE G LP HGS LF+R
Sbjct: 298 PEEELTI-KGILDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTR 356
Query: 401 GDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT 460
G TQVL VTLGA + Q L+ L +KRFM HY+FPP+ + EV G RRE+GHG
Sbjct: 357 GQTQVLSIVTLGAVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGA 416
Query: 461 LAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVS 520
LAE+AL V+PPE FPYT+R+ SEV+ S+GSTSM +VCG ++ALMDAG+P++ VAGV+
Sbjct: 417 LAERALEPVIPPEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVA 476
Query: 521 VGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDI 580
+GL+ E D + ILTDI G+ED LGDMDFK+AGT+ G+TA+Q+DIK AG+ DI
Sbjct: 477 MGLIKEGD-------EVAILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDI 529
Query: 581 ICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRK 640
+ + L A +GR+ IL M IS PR + +PR+ D + +R +IGP G + +K
Sbjct: 530 LTKALAQAREGRMHILGKMLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKK 589
Query: 641 IEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGA 699
I +ETG +I + DG + + A ++ EK L ++ + +EIEVG +Y G VT + ++GA
Sbjct: 590 IIDETGVKIDIEDDGRIFIAAVDKEAGEKALNIIENLT-KEIEVGKVYLGKVTRIADFGA 648
Query: 700 FVEFN------GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
FVE G++GL+H+S+L+H V RV DVV G Q+ ++ IG D +G +KLS K
Sbjct: 649 FVEVVPGVLGLPGKEGLVHISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKD 708
Query: 754 VSPRPE 759
P E
Sbjct: 709 AIPAEE 714
>gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
TW07627]
gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
TW07627]
Length = 711
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K+V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + + Q++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMNQEVPVKVLEVDRQGRIRLSIK 690
>gi|429091564|ref|ZP_19154232.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
1210]
gi|426743894|emb|CCJ80345.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
1210]
Length = 750
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 449/708 (63%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
++YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V LAE+ + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 TLNARVKALAESRLSDAYRITD----KQERYSQIDAIKADVIAALQAEQAEGDALDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 GDILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 474 E-----GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 693
>gi|374293408|ref|YP_005040443.1| polynucleotide phosphorylase [Azospirillum lipoferum 4B]
gi|357425347|emb|CBS88234.1| Polynucleotide phosphorylase [Azospirillum lipoferum 4B]
Length = 703
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/702 (43%), Positives = 432/702 (61%), Gaps = 24/702 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
++E E G R + LETGKIAR ANGAV++ +T VL T ++K DF PLTV+YQE
Sbjct: 6 RKEIEWGGRKLVLETGKIARQANGAVMVTYGDTTVLCTAVAAKAPKPGVDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +E QV+ +VLS D + D
Sbjct: 66 KAFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVVCTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A SAAL +S IP+ GPIG R+G GQ+++NPTMDE+ SDL+LV A T E
Sbjct: 126 PDIVAMVGASAALTISGIPFLGPIGAARVGYKNGQYVLNPTMDEVEDSDLDLVVAGTTEG 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-----YKLSMISE 293
LM++ +A+E++E+ + + H +E I LAE+A K+ + Y +
Sbjct: 186 VLMVESEAKELTEEVMLGAVMFGHTNFQPVIEMIIDLAEEAAKEPWDLPEPAYDRKALKA 245
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ E V + EA +Y++ + +K+G KALE +E Q +
Sbjct: 246 RLRETVGSDVEA---------AYTEMVKQSRYEKVGAAKAKALETLAEEFDAQSIGFEFK 296
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R ++ G R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 297 ELEADILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGT 356
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +LP +
Sbjct: 357 SQDEQIIDALEGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKK 416
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
DFPYT+RV SEV S+GS+SMATVCG S++LMDAG PL VAG+++GL+ E
Sbjct: 417 EDFPYTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIK-------E 469
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT +GVTA+Q+DIK I +I+ L A GRL
Sbjct: 470 DHGFAVLSDILGDEDHLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRL 529
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + ++ R + N+PR+ + + +R +IG G + R+I E+TG +I +
Sbjct: 530 HILGEMSKALTGAREGVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIDD 589
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ V A ++ + +E + I+ E E+G +Y G V V ++GAFV F G + GL+H
Sbjct: 590 DGTVKVSAVDQKKSDAAIEWIKGIVA-EPEMGVVYTGKVVKVVDFGAFVNFLGSRDGLVH 648
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+SEL+ + V +VSDVVS G + ++ IG D RG +KLS+K V
Sbjct: 649 ISELAQQRVGKVSDVVSQGDSVKVKVIGFDDRGKVKLSMKQV 690
>gi|410460722|ref|ZP_11314396.1| polynucleotide phosphorylase/polyadenylase [Bacillus azotoformans
LMG 9581]
gi|409926776|gb|EKN63930.1| polynucleotide phosphorylase/polyadenylase [Bacillus azotoformans
LMG 9581]
Length = 705
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/690 (42%), Positives = 441/690 (63%), Gaps = 13/690 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGA ++ ET VLST T+SK F PLTV+Y+E+ +A G IP
Sbjct: 15 RKLTVEIGQLAKQANGACLIRYGETAVLSTATASKEPKSLSFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +S+IP+ GPI + +GR+ +FI+NPT+++ SD++LV A T++ M++ A+
Sbjct: 135 SLALSVSNIPFEGPIAGVTVGRVDNEFIINPTVEQQEKSDIHLVVAGTKDAINMVEAGAK 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + + GK+K E +L + + +V LAE I
Sbjct: 195 EVPEETMLEAIMFGHEEIKRLIAFQEEIVSQVGKEKMEVELYEVDAELEAEVRTLAEEDI 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALEE--ECDEESLQVLPKAVDTVRKRVIRKRII 365
+ K R +A++++ VK EE E E +L + + + + K +R+ I
Sbjct: 255 KKAVQ--VAEKHAREDAINEVKASVKAKFEEREELPEGTLGQVDEIMYKLVKEEVRRLIT 312
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
E +R DGR++DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 KEKIRPDGRKIDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGI 372
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYT+R+ SE
Sbjct: 373 EESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVSE 432
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
V+ S+GSTS A++CG ++A+MDAG+P++ VAG+++GLV D DY +LTDI G
Sbjct: 433 VLESNGSTSQASICGSTLAMMDAGVPIKAPVAGIAMGLVKSGD-------DYTVLTDIQG 485
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L A KGR+QIL+HM + IS
Sbjct: 486 MEDHLGDMDFKVAGTTKGVTALQMDIKIEGLSREILEEALTQAQKGRMQILEHMMQTISE 545
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRS 664
PRT + +P++ T+K + D +R +IGP G KI EETG +I + DGT+ + + +
Sbjct: 546 PRTALSQYAPKILTMKINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFIASPDME 605
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
+ +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 MNQKAKKIIEDIV-REVEVGQMYLGKVKRIEKFGAFVEIFQGKDGLVHISELAEERVGKV 664
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVVS+G +L ++ D +G I LS KAV
Sbjct: 665 EDVVSIGDELLVKVTEIDKQGRINLSRKAV 694
>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides F]
gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis IP 31758]
gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis YPIII]
gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase [Yersinia pestis CO92]
gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|384127519|ref|YP_005510133.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|384138659|ref|YP_005521361.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis A1122]
gi|384416192|ref|YP_005625554.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420559576|ref|ZP_15056058.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-03]
gi|420570002|ref|ZP_15065476.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-05]
gi|420628976|ref|ZP_15118487.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-16]
gi|420639412|ref|ZP_15127860.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-25]
gi|420715401|ref|ZP_15195392.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-56]
gi|420736882|ref|ZP_15214395.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-61]
gi|420742369|ref|ZP_15219324.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-63]
gi|420753503|ref|ZP_15228993.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-65]
gi|420780495|ref|ZP_15252516.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-88]
gi|420796718|ref|ZP_15266963.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-91]
gi|420801821|ref|ZP_15271544.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-92]
gi|420812538|ref|ZP_15281205.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-94]
gi|420834031|ref|ZP_15300572.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-99]
gi|421765000|ref|ZP_16201787.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis INS]
gi|123149978|sp|Q0WBF9.1|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611335|sp|A4TQU4.1|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611342|sp|A7FMR8.1|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611439|sp|Q1C3L8.2|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704837|sp|A9R5A9.1|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704838|sp|B1JLX6.1|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Pestoides F]
gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 31758]
gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis YPIII]
gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342853788|gb|AEL72341.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis A1122]
gi|391422727|gb|EIQ85279.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-03]
gi|391438598|gb|EIQ99331.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-05]
gi|391502538|gb|EIR56825.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-16]
gi|391507393|gb|EIR61225.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-25]
gi|391582429|gb|EIS28187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-56]
gi|391610824|gb|EIS53064.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-61]
gi|391611220|gb|EIS53418.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-63]
gi|391624055|gb|EIS64745.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-65]
gi|391649859|gb|EIS87207.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-88]
gi|391667088|gb|EIT02461.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-91]
gi|391676890|gb|EIT11251.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-92]
gi|391677296|gb|EIT11614.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-94]
gi|391707793|gb|EIT39107.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-99]
gi|411173906|gb|EKS43943.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis INS]
Length = 705
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/698 (42%), Positives = 443/698 (63%), Gaps = 13/698 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
V +V+D + +GQ + ++ + D +G I+LS+K A +P
Sbjct: 658 RVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTP 695
>gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium
retbaense DSM 5692]
gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium
retbaense DSM 5692]
Length = 742
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/689 (43%), Positives = 429/689 (62%), Gaps = 14/689 (2%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNT 129
I +ETG++A ANGAV + T VL T + DF+PL VDYQE +A G IP
Sbjct: 21 ILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRDIDFMPLVVDYQEMSYASGRIPGN 80
Query: 130 YMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
Y RRE G P ERE LV R+IDRPIRPLFPAGF EVQ++A+VLS+ + +PD++A S
Sbjct: 81 YFRREIGRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLSAAPEVNPDVLALTGAS 140
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AA+ +SDIP+ GPIG IR+G++ G+F++NP+ +EL SDLNLV A +R+ M++
Sbjct: 141 AAMHISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENSDLNLVLAGSRDAVTMVEGGGNF 200
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIE 308
+ E + + H + L+ Q L EK G K + + +V +LA + +
Sbjct: 201 VPEDRMAEAITWGHEQVQALLQLQDELREKIGAPKIAVQAPEADTELESRVHDLAGSELA 260
Query: 309 AVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE--SLQVLPKAVDTVRKRVIRKRIIA 366
P+ K ER A + V LE+E EE L+ K + + K ++RKR+
Sbjct: 261 EALQVPN--KLERKTAKKTVKDKVMATLEQEFAEEPERLKGAGKIFEALEKDIVRKRVKE 318
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
R+DGR L VR + E+ +LP HGS++F+RG+T+VL TLG+ + QR+E L G
Sbjct: 319 TKTRIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVATLGSSRDEQRIEMLDGE 378
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
KRFMLHY+FPP+C+ EV G RRE+GHG LAE+AL VLP E++FP+T+RV SEV
Sbjct: 379 LNKRFMLHYNFPPYCVGEVKMMRGPARREIGHGALAERALTPVLPTEDEFPFTMRVVSEV 438
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
M S+GS+SMATVCG S++LMDAG+P+ VAG+++GL+ E D ++ +LTDILG
Sbjct: 439 MESNGSSSMATVCGTSLSLMDAGVPVSAPVAGIAMGLIKEED-------EFLVLTDILGD 491
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
EDHLGDMDFK+AGT G+TAIQ+D K AGIP +++ L A RL ILD+M + A
Sbjct: 492 EDHLGDMDFKVAGTAEGITAIQMDSKIAGIPPEVLKRALNQAMDARLHILDNMNTVLPAA 551
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKNRSV 665
R + ++P+L ++ D + ++ +IGP G + I + TG I + D G +++ A N+
Sbjct: 552 RAELSEHAPQLEIVEVDTERIKDVIGPGGKNIKAITQATGASIDIEDSGRISIFAPNQQA 611
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+++ ++ V F ++ EVG Y+G V + +GAFVE G +GLLH+S+L + V +V
Sbjct: 612 LQEAVDMVLF-YDQKAEVGKDYEGTVKRIMNFGAFVEILPGLEGLLHISQLDQQRVEQVE 670
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV VG + ++ I Q G I+LS KAV
Sbjct: 671 DVVKVGDSVKVKVIEQSGDGKIRLSRKAV 699
>gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1617]
gi|187611311|sp|Q32BG9.2|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1617]
Length = 711
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLLMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|422969671|ref|ZP_16973464.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA124]
gi|371601144|gb|EHN89912.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA124]
Length = 711
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LA+A + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAKARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|432451411|ref|ZP_19693668.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE193]
gi|433035058|ref|ZP_20222757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE112]
gi|430977840|gb|ELC94663.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE193]
gi|431547798|gb|ELI22093.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE112]
Length = 711
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LA+A + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAQARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|373466883|ref|ZP_09558192.1| polyribonucleotide nucleotidyltransferase [Haemophilus sp. oral
taxon 851 str. F0397]
gi|371759647|gb|EHO48359.1| polyribonucleotide nucleotidyltransferase [Haemophilus sp. oral
taxon 851 str. F0397]
Length = 709
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + S + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDNSAAKNVMARIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLTPKQETEI 699
>gi|420337504|ref|ZP_14839066.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-315]
gi|391259378|gb|EIQ18452.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-315]
Length = 711
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+ PR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINTPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC
3083-94]
gi|226702689|sp|B2U211.1|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC
3083-94]
Length = 711
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + +ETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTDETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
Ech703]
gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
Length = 722
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/707 (42%), Positives = 442/707 (62%), Gaps = 12/707 (1%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSV 106
P V +L +F+ G +TLETG +AR A AV++ MD+T V TV +K
Sbjct: 10 PLVKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKPG 69
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+DF PLTV+YQE+ +A G IP + RREG P E E L+ R+IDRPIRPLFP GF++EVQV
Sbjct: 70 QDFFPLTVNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFFNEVQV 129
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLS 226
+A+V+S + + PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S
Sbjct: 130 IATVVSVNPQISPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQS 189
Query: 227 DLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY 286
L+LV A T LM++ +A ++E + + H + +E L +AGK K ++
Sbjct: 190 RLDLVVAGTEGAVLMVESEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAEAGKSKWDW 249
Query: 287 KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ 346
+ ++ + +V L+EA + + K ER +D I DV L E D
Sbjct: 250 QPPEVNVELQNRVKVLSEARLGDAYR--ITEKQERYAQVDAIKSDVVTGLLAEDDTLDDN 307
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ + ++ K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L
Sbjct: 308 EIRDILGSIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 367
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
T TLG +AQ ++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +
Sbjct: 368 VTATLGTERDAQIIDELMGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 427
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
LAV+P FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 428 LAVMPKPEAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 487
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D Y +L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L
Sbjct: 488 GD-------SYVVLSDILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALN 540
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A RL IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG
Sbjct: 541 QAKGARLHILGVMEQAISTPRGEISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETG 600
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
I + DGT+ + + + + + +++ I EIEVG IY+G VT + ++GAFV G
Sbjct: 601 TTIEIEDDGTVKIASSDGDKAREAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGG 659
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
G++GL+H+S+++ + + +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 660 GKEGLVHISQIADKRIEKVADYLQLGQEVPVKVLEVDRQGRVRLSIK 706
>gi|375003146|ref|ZP_09727486.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
gi|353077834|gb|EHB43594.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
Length = 721
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/711 (41%), Positives = 447/711 (62%), Gaps = 18/711 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GD 104
PS G + L +F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + + L E +
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDET 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 700
>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
aphrophilus NJ8700]
gi|422336698|ref|ZP_16417671.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus F0387]
gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
aphrophilus NJ8700]
gi|353346010|gb|EHB90297.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus F0387]
Length = 709
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 441/702 (62%), Gaps = 12/702 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT++E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV E +E + + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDVIKADVIAQFTAEDEEVAEGKIIDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDKNAVQDVMARIEDITA-EVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
E V +VSD + VGQ++ ++ + D +G I+L++K ++P+ EA
Sbjct: 656 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKEEA 697
>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
T7901]
gi|259534168|sp|C5BPV5.1|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
T7901]
Length = 705
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/704 (42%), Positives = 439/704 (62%), Gaps = 17/704 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEK 119
++F+ G+ ITLETG+IAR A GAV+ M +T VL TV +K S +DF PL+V YQEK
Sbjct: 6 KKFQYGNDTITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVHYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +V++++ DP
Sbjct: 66 AYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEKDVDP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREK 238
DI A TSAAL +S IP+ GPIG R+G +++NPT L+ S+L++V A T++
Sbjct: 126 DICAMIGTSAALAISGIPFNGPIGAARVGYTQADGYLLNPTYQALASSELDMVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A E+ E + + AH E ++ LA+ AGK +++ +++ ++
Sbjct: 186 VLMVESEANELPEDIMLGAVLYAHQEMQAVVQAVNELAKDAGKPTWDWQPEAVNQALVDA 245
Query: 299 VSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
+ E I + TD K +R + L ++ L E + S + K +
Sbjct: 246 LKADFEESIGVAYRITD----KQKRYDRLSELRSQAVAQLAGEGSDISQDDVKKVFGKLE 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
K ++R R++A R+DGR VRP+ E G LP +HGS+LF+RG+TQ L TLG+ +
Sbjct: 302 KNIVRSRVVAGEPRIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARD 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ +++L G FMLHY+FPP+ + E G+ RRE+GHG LA + + A+LP E+ F
Sbjct: 362 AQIIDALEGEHRDNFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPKEDQF 421
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E +
Sbjct: 422 PYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEEN-------G 474
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE A RL IL
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMETALEQALHARLHIL 534
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M I+ PR N+P+ T+K D + +R +IG GA R I EETG I + DGT
Sbjct: 535 SEMNAVIAQPRESLSDNAPQFHTMKVDPEKIRDIIGKGGATIRSITEETGASIDIDDDGT 594
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + ++ + +++ I E E+G +YKG V + ++GAFV F G+ GL+H+S+
Sbjct: 595 VKIYGDDGDSLQGAINRIEEITA-EAEIGEVYKGKVVRIVDFGAFVNFLPGKDGLVHISQ 653
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
++HE V V+D + GQ++ ++C+ D RG IKLS+K + P+PE
Sbjct: 654 IAHERVQNVTDYLKEGQEVDVKCMDIDQRGRIKLSIKELLPQPE 697
>gi|417086866|ref|ZP_11953963.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
cloneA_i1]
gi|355350332|gb|EHF99532.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
cloneA_i1]
Length = 711
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 PTLGTARDAQVLAELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|416998829|ref|ZP_11939498.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula
ACS-068-V-Sch12]
gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|333976982|gb|EGL77841.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula
ACS-068-V-Sch12]
Length = 689
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/698 (43%), Positives = 439/698 (62%), Gaps = 14/698 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+E F + ++ R++T+ETG++A+ A GAV++G +T+VL T T SK DF PLTVD
Sbjct: 1 MEQF--QMDLAGRMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVD 58
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK +A G +P +++RE P E +L R+IDRPIRPLF G +EV V+A+V+S D
Sbjct: 59 YEEKMYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQ 118
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
DP I SAAL +SD+PW GPI +R+GRI G+F+VNPT +L +DLN+V A T
Sbjct: 119 DCDPAICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGT 178
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
++ LM++ A E+ E + + AH E K + Q + K GK+K+ ++ + +
Sbjct: 179 KDAILMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEI 238
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
+ V ++A K +R +++ DV EE ++L + KA D +
Sbjct: 239 SDAVRAYGHDKLDAAVR--CADKQQRDAQENEVRADVLAHF-EEIYPDNLADVNKAFDAM 295
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K ++R I E +R DGRQLDEVRPI C +G LP HGS LF+RG TQVL T+ +
Sbjct: 296 TKEIVRHMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLS 355
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
E Q ++ L KR++ HY+FP F + E G RRE+GHG LAE+AL+ V+P E D
Sbjct: 356 EKQTIDGLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEED 415
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+SMA+VCG +++LMDAG+P++ VAG+++GLV++ GE
Sbjct: 416 FPYALRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQ-----GE-- 468
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +G+ +I+ E LE AHKGR+ I
Sbjct: 469 HYTILTDIQGMEDALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHI 528
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
+ M I+ PR Q + +PR+ T+K D D +R +IG G + R I EETG +I + DG
Sbjct: 529 MGIMLDTIAEPRQQMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDG 588
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + + K E + + +E+EVG +Y G VT + +GAFVE G++GL+H+S
Sbjct: 589 TVFIASVEQEGAAKAQEIITNLT-KEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHIS 647
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+L+ E V V DVVSVG ++ ++ I D +G + LS K
Sbjct: 648 KLAKERVENVEDVVSVGDEIMVKVIEIDKQGRVNLSRK 685
>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
Length = 711
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/695 (43%), Positives = 444/695 (63%), Gaps = 13/695 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
E G R + LETG IAR A GAVV+ ET VL T K RDF PLTV+YQE+ +
Sbjct: 24 IEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNYQERTY 83
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRP+RPLFP GF +EVQV+A+V+SSDG+ DPDI
Sbjct: 84 AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVISSDGENDPDI 143
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+ SAAL LS IP+ PI R+G I G++++NPT+ ++ S L+LV A T + LM
Sbjct: 144 PSLIGASAALALSGIPFTTPIAAARVGYIDGRYVLNPTLSQMEKSALDLVVAGTEKAVLM 203
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +ARE+ E+ + + H E ++ LAE+AGK ++ + E + V +
Sbjct: 204 VESEARELPEEIMLGSVIFGHQEMQAVIQAIRELAEEAGKAPWDWSTPVEDEDLMSAVWD 263
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQ-DVKKALEEECDEESLQVLPKAVDTVRKRVI 360
EA ++ + SK +R +L + V++ + EE + S + + +AV + KR++
Sbjct: 264 CGEARLQEAYQ--VRSKQDRQASLAEARSFIVERLVPEEDPQWSKEQVLEAVSALEKRLV 321
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R++I+A G R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG +AQ +
Sbjct: 322 REQILAGGERIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDAQVI 381
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+++ G +RFMLHY+FPP+C+ E G RRE+GHG LA+++L AV+P E FPY +
Sbjct: 382 DAIEGERRERFMLHYNFPPYCVGETGFVGAPKRREIGHGRLAKRSLNAVVPDEESFPYVI 441
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMATVCG S++LMDAG+P+ E VAG+++GL+ E D + +L
Sbjct: 442 RVVSEITESNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERD-------QFAVL 494
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +GRL IL M
Sbjct: 495 SDILGDEDHLGDMDFKVAGTGKGVTALQMDIKIDGITEEIMRTALSQAREGRLHILQKMN 554
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
ISAPR + +PR+ K + + +R +IG GA R + EETG I ++ DGT+ +
Sbjct: 555 EVISAPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDITDDGTVKIF 614
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ +++ ++ +V+ I+ ++EVG IY+G V+ + ++GAFV G+ GLLH+S++S E
Sbjct: 615 SSDKADGQEARRRVEEIVS-DVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISDE 673
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V VSD +S G + ++ + D +G ++LS+KA+
Sbjct: 674 RVKNVSDKLSEGDIIRVKVLEVDKQGRVRLSIKAI 708
>gi|386265388|ref|YP_005828880.1| polynucleotide phosphorylase [Haemophilus influenzae R2846]
gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
Length = 709
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ II E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIIA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
Length = 709
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEED-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDGNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|338741569|ref|YP_004678531.1| polynucleotide phosphorylase [Hyphomicrobium sp. MC1]
gi|337762132|emb|CCB67967.1| polynucleotide phosphorylase/polyadenylase [Hyphomicrobium sp. MC1]
Length = 732
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/727 (41%), Positives = 452/727 (62%), Gaps = 29/727 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ + + E + G R + LETG AR A+ AV+ +T VL+TV ++ DF PLT
Sbjct: 1 MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSAKPGIDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP Y +REG P E+E LV R+IDRPIRPLF GF +E QV+ +V+S
Sbjct: 61 VNYQERTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVDGFKNETQVVVTVMSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+ A SAAL LS +P+ GPIG R+G I G+F++NP +DE++ + L+LV A
Sbjct: 121 DLENDPDILGMVAASAALTLSGLPFLGPIGAARVGLIGGEFVLNPMIDEMAETALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + +M++ +A+E+ E + + H ++ I+LAEKA K+ + K++ ++
Sbjct: 181 GTTDAVMMVESEAKELPESQMLEAVMFGHKHMQPVIQAIIKLAEKAAKEPWDIKIADKAK 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-----DEESLQVL 348
+ V +AEA ++ F S E+G+ D + + KKA+ E D +L
Sbjct: 241 YAAD-VKKIAEAKLKEAF-----STKEKGKRQDLV-SEAKKAITEGIAIPADDPNEKVLL 293
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A ++ ++R ++ R+DGR L VRPI E LP HGS+LF+RG+TQ L
Sbjct: 294 GDAFKSLEMDIMRGDVLKTKRRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVV 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q ++SL G +RF+LHY+FPP+ + EVG+ RRE+GHG LA +A+
Sbjct: 354 ATLGTGEDEQFIDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHP 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP + +FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E D
Sbjct: 414 MLPSQEEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
D+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK GI +I+ LE A
Sbjct: 474 -------DFVVLSDILGDEDHLGDMDFKVAGTDKGVTSLQMDIKITGITEEIMRVALEQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
H+GR+ IL M + I+ R++ +PR+ T+K D +R +IG G++ R+I E+G +
Sbjct: 527 HEGRIHILGEMSKAITGARSELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAK 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + + NR +EK L+++ I E EVG IYKG V V E+GAFV F G +
Sbjct: 587 IDIEDDGTVKIASANRESIEKALDRIRGITS-EPEVGHIYKGKVVKVMEFGAFVNFFGAK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS-------PRPEA 760
GL+H+S+L+ V +VV GQ++ ++ +G D RG +LS+K V PR E
Sbjct: 646 DGLVHISQLAQGRPETVGEVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEIPRAEG 705
Query: 761 DVKGVVE 767
+ + V E
Sbjct: 706 EPEEVFE 712
>gi|730350|sp|P41121.1|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
Short=PNPase
gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
Length = 709
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/700 (41%), Positives = 451/700 (64%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+L +F+ G +T+ETG +AR A AV++ MD+T V TV K + +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E LV R+IDRP+RPLFP GF +EV+++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV +
Sbjct: 121 NPQINPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A ++E+ + + H + ++ LA +AGK+K ++ +++
Sbjct: 181 GTAGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKWDWVPEPVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V+ LAE+ + + K ER +D I +V AL E+ + + + +
Sbjct: 241 ALHDRVAELAESRLGDAYR--ITEKQERYAQVDAIKDEVTAALLEQDETLEEAEIHEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K V+R R+++ R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SLEKNVVRSRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+ G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I+ PR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 532 HILSVMEQAITTPRDDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGEKAKHAISRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + VGQ+ S++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVADYLQVGQETSVKVLEIDRQGRVRLSIK 690
>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|374979306|ref|ZP_09720645.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|375116134|ref|ZP_09761304.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|375120766|ref|ZP_09765933.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|375125057|ref|ZP_09770221.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|378956896|ref|YP_005214383.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378985879|ref|YP_005249035.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|379702543|ref|YP_005244271.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|383497937|ref|YP_005398626.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386592968|ref|YP_006089368.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|409246995|ref|YP_006887697.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416423857|ref|ZP_11691191.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416433548|ref|ZP_11697008.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416440923|ref|ZP_11701233.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416447951|ref|ZP_11706155.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416454517|ref|ZP_11710367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416460963|ref|ZP_11715071.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416462677|ref|ZP_11715623.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416475249|ref|ZP_11720542.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416492617|ref|ZP_11727546.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|416498682|ref|ZP_11730438.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416505804|ref|ZP_11734150.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416516087|ref|ZP_11738965.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416526950|ref|ZP_11742788.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|416534117|ref|ZP_11746935.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416546605|ref|ZP_11753999.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416553505|ref|ZP_11757756.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|416557684|ref|ZP_11759689.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416568338|ref|ZP_11764690.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|416577484|ref|ZP_11769820.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416586130|ref|ZP_11775375.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416589304|ref|ZP_11776956.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416600919|ref|ZP_11784682.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416605393|ref|ZP_11786881.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416614874|ref|ZP_11793074.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416629764|ref|ZP_11800327.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416638411|ref|ZP_11803882.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416659227|ref|ZP_11814705.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|416670507|ref|ZP_11820145.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416678864|ref|ZP_11822795.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416699910|ref|ZP_11828924.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|416706493|ref|ZP_11831705.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416714043|ref|ZP_11837494.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416718688|ref|ZP_11840796.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416725821|ref|ZP_11846044.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416732946|ref|ZP_11850037.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|416736432|ref|ZP_11852059.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|416750625|ref|ZP_11859795.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|416754912|ref|ZP_11861704.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|416765636|ref|ZP_11868941.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|416771443|ref|ZP_11872708.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|418482450|ref|ZP_13051466.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418488870|ref|ZP_13056264.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|418494316|ref|ZP_13060770.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|418500509|ref|ZP_13066905.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|418505780|ref|ZP_13072126.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|418507278|ref|ZP_13073602.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|418514495|ref|ZP_13080695.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|418524406|ref|ZP_13090391.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|418759829|ref|ZP_13316006.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418765956|ref|ZP_13322035.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418771282|ref|ZP_13327289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418773993|ref|ZP_13329966.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418778062|ref|ZP_13333976.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418786360|ref|ZP_13342176.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418788880|ref|ZP_13344672.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418794387|ref|ZP_13350108.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418797587|ref|ZP_13353273.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|418802003|ref|ZP_13357635.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|418806489|ref|ZP_13362061.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418810649|ref|ZP_13366189.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418831227|ref|ZP_13386185.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418837487|ref|ZP_13392361.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418842301|ref|ZP_13397111.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418847003|ref|ZP_13401768.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418851459|ref|ZP_13406171.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418855932|ref|ZP_13410580.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|418857696|ref|ZP_13412321.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|418862829|ref|ZP_13417368.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418869507|ref|ZP_13423940.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|419786783|ref|ZP_14312498.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|419793159|ref|ZP_14318782.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|438145440|ref|ZP_20875838.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|357207507|gb|AET55553.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|363555621|gb|EHL39845.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363556605|gb|EHL40818.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|363562825|gb|EHL46914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|363562916|gb|EHL47003.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363567741|gb|EHL51739.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363577683|gb|EHL61502.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|363578337|gb|EHL62148.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|366062134|gb|EHN26371.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|366063481|gb|EHN27699.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366068087|gb|EHN32235.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|366068964|gb|EHN33096.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|366069251|gb|EHN33376.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|366078746|gb|EHN42744.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|366081586|gb|EHN45529.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|372207265|gb|EHP20764.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|380464758|gb|AFD60161.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|383800009|gb|AFH47091.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|392617138|gb|EIW99563.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|392620726|gb|EIX03092.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|392733810|gb|EIZ91001.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392738674|gb|EIZ95814.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392745470|gb|EJA02503.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392748324|gb|EJA05311.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392753033|gb|EJA09973.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392756526|gb|EJA13422.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392761777|gb|EJA18596.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392761938|gb|EJA18756.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392769026|gb|EJA25772.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|392779455|gb|EJA36124.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|392781597|gb|EJA38238.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392783106|gb|EJA39736.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392799007|gb|EJA55276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392800423|gb|EJA56661.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392806872|gb|EJA62956.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392809474|gb|EJA65511.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392817606|gb|EJA73516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392820282|gb|EJA76132.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|392834226|gb|EJA89836.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392834765|gb|EJA90367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392835970|gb|EJA91558.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|434938823|gb|ELL45728.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
Length = 721
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/711 (41%), Positives = 447/711 (62%), Gaps = 18/711 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGD 104
PS G + L +F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + + L E +
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDET 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 700
>gi|253991498|ref|YP_003042854.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
(polynucleotid phosphorylase) (pnpase) (cap87k)
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
Length = 708
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G I +ETG +AR A AV++ MD+T V TV K + +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTIAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G +P ++ RREG P E E LV R+IDRP+RPLFP GF +EVQ++A+V+S + + +PD
Sbjct: 68 YAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV + T L
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+ + + H + ++ L +AGK+K ++ I+++ ++V+
Sbjct: 188 MVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAEAGKEKWDWAPEPINQELHDRVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE+ + + K ER +D I +V AL E+ + + + + + K V+
Sbjct: 248 ALAESRLGDAYR--ITEKQERYAQVDVIKDEVIAALLEQDEALDEAEIHEILGNLEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQII 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P N+FPYTV
Sbjct: 366 DELMGERTDRFLLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPKANEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R GV+A+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSREGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I+ PR +PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QAINCPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGEKAKHAISRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + VGQ++S++ + D +G ++LS+K
Sbjct: 658 RVEKVADYLQVGQEVSVKVLEVDRQGRVRLSIK 690
>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
Length = 689
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/698 (43%), Positives = 439/698 (62%), Gaps = 14/698 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+E F + ++ R +T+ETG++A+ A GAV++G +T+VL T T SK DF PLTVD
Sbjct: 1 MEQF--QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVD 58
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK +A G +P +++RE P E +L R+IDRPIRPLF G +EV V+A+V+S D
Sbjct: 59 YEEKMYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQ 118
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
DP I SAAL +SD+PW GPI +R+GRI G+F+VNPT +L +DLN+V A T
Sbjct: 119 DCDPAICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGT 178
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
++ LM++ A E+ E + + AH E K + Q + K GK+K+ ++ + +
Sbjct: 179 KDAILMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEI 238
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
+ V ++A K +R +++ DV EE ++L + KA D +
Sbjct: 239 SDAVRAYGHDKLDAAVR--CADKQQRDAQENEVRADVLAHF-EEIYPDNLADVNKAFDAM 295
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K ++R I E +R DGRQLDEVRPI C +G LP HGS LF+RG TQVL T+ +
Sbjct: 296 TKEIVRHMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLS 355
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
E Q ++ L KR++ HY+FP F + E G RRE+GHG LAE+AL+ V+P E D
Sbjct: 356 EKQTIDGLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEED 415
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+SMA+VCG +++LMDAG+P++ VAG+++GLV++ GE
Sbjct: 416 FPYALRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQ-----GE-- 468
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +G+ +I+ E LE AHKGR+ I
Sbjct: 469 HYTILTDIQGMEDALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHI 528
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
+ M I+ PR Q + +PR+ T+K D+D +R +IG G + R I EETG +I + DG
Sbjct: 529 MGIMLDTIAEPRQQMSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDG 588
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + + K E + + +E+EVG +Y G VT + +GAFVE G++GL+H+S
Sbjct: 589 TVFIASVEQEGAAKAQEIITNLT-KEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHIS 647
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+L+ E V V DVVSVG ++ ++ I D +G + LS K
Sbjct: 648 KLAKERVENVEDVVSVGDEIMVKVIEIDKQGRVNLSRK 685
>gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum
lavamentivorans DS-1]
gi|187610324|sp|A7HZ97.1|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum
lavamentivorans DS-1]
Length = 728
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/708 (44%), Positives = 444/708 (62%), Gaps = 31/708 (4%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQE 118
+EE E G R + LETGKIAR A+GAV+ +T VL+TV K DF PLTV+YQE
Sbjct: 6 REEIEWGGRTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E LV R+IDRPIRPLF GF +E QV+A+V+S D + D
Sbjct: 66 KTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL +S +P+ GPIG R+G I G++ +NP +DE+ S L+LV A T +
Sbjct: 126 PDIVAMIAVSAALTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESALDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E+SE + + H E ++ IR+AEK K+ + + SE + K
Sbjct: 186 VMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKEPRAIDVKDNSE-LVAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD----- 353
V LAE+ + A + K +R EAL VK AL C+ E P AV
Sbjct: 245 VRELAESDVRAAYG--LKDKGQRHEALAAAKDKVKSAL---CNPED----PNAVSETDVG 295
Query: 354 ----TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ V+R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 296 GVFKSIESDVVRNSILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVA 355
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLN-RREVGHGTLAEKALLA 468
TLG + Q +++L G + F+LHY+FPPF + E G RVG RREVGHG LA +AL A
Sbjct: 356 TLGTGDDEQFIDALEGTYKENFLLHYNFPPFSVGETG-RVGFTGRREVGHGKLAWRALRA 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLPP+ +FPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL+ VAG+++GL+ E
Sbjct: 415 VLPPKTEFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILE-- 472
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + +L+DILG EDHLGDMDFK+AGT+ GVT++Q+DIK GI I+ + L A
Sbjct: 473 ---GE--RFAVLSDILGDEDHLGDMDFKVAGTQEGVTSLQMDIKITGINERIMKQALAQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GRL IL M + + R + +PR+ + D +R +IG G + R+I E+TG +
Sbjct: 528 KGGRLHILGEMAKALDTARPEMGEYAPRIEVITVPTDKIREVIGTGGKVIREIVEKTGAK 587
Query: 649 ISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
+ +S DGT+ V + + + K + + I+ E EVG IY+G V ++GAFV F G +
Sbjct: 588 VDISDDGTIKVASSDGESIRKAIAWIQGIVA-EPEVGKIYEGTVVKAVDFGAFVNFFGPR 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
GL+H+S+++ V +VSDVV G ++ ++ +G D RG ++LS+K V+
Sbjct: 647 DGLVHISQMAPTRVEQVSDVVKEGDKVKVKLLGFDDRGKVRLSMKHVN 694
>gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. HTCC7211]
Length = 690
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/708 (41%), Positives = 447/708 (63%), Gaps = 32/708 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ + +K+E E+ + I+LETGK+AR A+GA++ ET +L+TV +K + D+ PL+
Sbjct: 1 MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLFP F +EVQ++ +V+S
Sbjct: 61 VNYQEKYYAGGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + PDI+A A+SAAL +S +P+ GP+G R+G + G++I+NP+ EL S L+LV A
Sbjct: 121 DKENQPDILAITASSAALAISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ +A ++E+++ ++ H V P I + E+ K+ ++ E
Sbjct: 181 GTKDAVLMVESEANGLTEEEMLNAVKFGHEGFV----PVIEMVEELAKECRK------PE 230
Query: 294 QTLEKVSNLAEAH--IEAVFTDPSYSKF------ERGEALDKIGQDVKKALEEECDEESL 345
T+EK +L+E +E FT F +R + +I KK EE + L
Sbjct: 231 WTVEK-KDLSEVKQKLEETFTKDLTKAFATRDKQDRSNQISEITDKAKKLFEENENYSDL 289
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
V + + K+++R I+ R+DGR L +VRPI CE G LP HGS+LF+RG+TQ
Sbjct: 290 DV-NSELKNLEKKIVRTDILKNKNRIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQA 348
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + QR+ESL G +RFMLHY+FPPF + E G R+G RRE+GHG LA +A
Sbjct: 349 IVVATLGTSDDEQRIESLDGLQRERFMLHYNFPPFSVGETG-RIGTGRREIGHGKLAWRA 407
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ + LP + FPYT R+ SE+ S+GS+SMATVCG S+ALMDAG+P++E VAG+++GL+
Sbjct: 408 INSSLPSKEAFPYTFRIVSEITESNGSSSMATVCGTSLALMDAGVPIKEPVAGIAMGLIK 467
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D D+ +L+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ + L
Sbjct: 468 EGD-------DFSVLSDILGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQAL 520
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A GR+ IL M + +SA R +++P++ + D + +IG GA R+I E++
Sbjct: 521 SQAKDGRVHILGEMNKALSASREDVGKHTPKMEQVNVDKKDIAAVIGKGGATIREIVEKS 580
Query: 646 GGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G ++ V+D G +TV A + ++ + I + E+ IY G V + E+GAFV F
Sbjct: 581 GAKVDVNDEGVVTVAAPDEESRNIAMQMIKDITAK-AELNKIYSGKVMKIMEFGAFVNFL 639
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
G Q GL+H+SEL+ + V++V+DVV G ++ ++ IG D RG +KLS+K
Sbjct: 640 GKQDGLVHISELADKRVAKVTDVVKEGDEVKVKVIGFD-RGKVKLSMK 686
>gi|432996934|ref|ZP_20185517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE218]
gi|433117049|ref|ZP_20302835.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE153]
gi|431503729|gb|ELH82464.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE218]
gi|431632248|gb|ELJ00551.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE153]
Length = 711
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLET +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETSMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|417843177|ref|ZP_12489254.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21127]
gi|341950411|gb|EGT77000.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21127]
Length = 709
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITSEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|442592996|ref|ZP_21010952.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441607152|emb|CCP96393.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
Length = 711
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LA A + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAGARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
Length = 734
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 264 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 319
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 320 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 376
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 377 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLA 436
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 437 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 496
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 497 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 549
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 550 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 609
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 610 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 668
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 669 EGLVHISQIADKRVEKVTDYLLMGQEVPVKVLEVDRQGRIRLSIK 713
>gi|417264640|ref|ZP_12052034.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.3916]
gi|418304798|ref|ZP_12916592.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNF18]
gi|339416896|gb|AEJ58568.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNF18]
gi|386222349|gb|EII44778.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.3916]
Length = 711
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGVMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEV +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVSRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|419846105|ref|ZP_14369362.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK2019]
gi|386414400|gb|EIJ28956.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK2019]
Length = 712
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/705 (41%), Positives = 441/705 (62%), Gaps = 12/705 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + S + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSSAAKNVMARIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E + +
Sbjct: 656 ERVEKVSDYLHVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAE 700
>gi|383784818|ref|YP_005469388.1| polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrooxidans C2-3]
gi|383083731|dbj|BAM07258.1| polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrooxidans C2-3]
Length = 710
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/701 (42%), Positives = 441/701 (62%), Gaps = 31/701 (4%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQF 121
+G + I LETG++A+ A G+ + D T VL+T S+K S++ DF+PLTVDYQE+ +
Sbjct: 10 VGGKNIRLETGRMAKLAGGSATVWADGTVVLATAVSAK--SMKPGIDFIPLTVDYQERAY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P ERE+L R+IDRPIRPL P G+++E Q++ASV+S D D+
Sbjct: 68 AAGKIPGGFFKREGKPSEREVLNSRLIDRPIRPLLPEGYFYETQLVASVISIDKGGVADV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
MA A S AL LSD+P+ PIG +R+ + G +IVNPT++E + S ++LV A TR+ +M
Sbjct: 128 MAVIAASTALYLSDVPFHSPIGAVRLALVDGNYIVNPTLEEQTKSQIDLVVAGTRDAIMM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ QA E+SE G+ LAH + +E Q +L AG++K+ + I T+ +
Sbjct: 188 VEGQASEVSEDVFLKGIALAHEAILPIIEAQEKLRALAGREKRPIPANPIPMDTVAAIRE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---------EEECDEESLQVLPKAV 352
+ ++ K ER +A+DKI V++ +E D L A+
Sbjct: 248 RFGSELDQAMV--LSGKQERQDAVDKIFSQVREVFLSGDVAPTPAQEKD------LSNAI 299
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
V + +R+ ++ + +R DGR L ++RPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 300 HEVERLTLREIVLEKKIRADGRGLTDIRPITIEVGLLPRTHGSALFTRGETQSLSVATLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ QR+++L G TKRFMLHY+FPPF + E G RRE+GHG LAE+AL V+P
Sbjct: 360 TSDDEQRIDALEGEYTKRFMLHYNFPPFSVGEAKPMRGPGRREIGHGNLAERALRPVVPT 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ FPY++R+ S+++ S+GS+SMATVCGG++A+MDAG+P++ VAGV++GL+ E D
Sbjct: 420 KEAFPYSIRLVSDILESNGSSSMATVCGGTLAMMDAGVPIKAPVAGVAMGLIKEGD---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
IL+DILG+EDHLGDMDFK+ GT G+TA+Q+DIK +GI L ++ E LE A +GR
Sbjct: 476 ---RVAILSDILGVEDHLGDMDFKVTGTLQGITAVQMDIKISGITLALMKEALEQARQGR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M +SA R +PR+ TLK D +R +IGP G + R I E+TG +I +
Sbjct: 533 LHILAKMNETLSATRDVMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEID 592
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + + S ++ +E ++ I+ E+EVG IY G V ++ +YGAFVE G GL
Sbjct: 593 DSGLIQIASVDESAAQRAVEMINQIV-EEVEVGRIYLGKVKTIADYGAFVELFPGTTGLC 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
H+S+L+ V +V DVVS G + ++ + D +G I+LS K
Sbjct: 652 HISQLADHRVEKVLDVVSEGDMILVKALEVDRQGKIRLSRK 692
>gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
Length = 703
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/697 (43%), Positives = 440/697 (63%), Gaps = 23/697 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQ 120
E+G R +T+ETGKIA+ ANG+V++ ET V+ VT + D+ R DF PLTVD++EK
Sbjct: 18 ELGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGT--DTPREGVDFFPLTVDFEEKM 75
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++RREG P E +L R+IDRPIRP+FP G++++VQ++A+ +S D PD
Sbjct: 76 YAVGKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPD 135
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I A S AL +SDIP+ GPI +R+GR+ G+FI+NPT+++ ++S++N+ A T+E L
Sbjct: 136 IPAMIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVAGTKEAIL 195
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A+E+SE+ + + H E K + Q ++ + GK K E+ + E +++
Sbjct: 196 MVEAGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPEALSKEIM 255
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLPKAVDTVRK 357
E I DP K R DK+ + K+A+ E E ES + V + K
Sbjct: 256 EYGEPKIHDALMDPD--KLHR----DKMVSETKEAILEHFVELYPESEIDIAHIVQKLVK 309
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+V R I + +R DGR LDEVRPI CE G L HG SLF+RG TQVL + L EA
Sbjct: 310 KVFRHIITHDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREA 369
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L TKR++ HY+FPP+ + E RRE+GHG LAE+ALL V+P E +FP
Sbjct: 370 QTLDGLGTELTKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFP 429
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SEV+ S+GS+SMA+ C +++LMDAG+P++ V+GV++GLV E D D
Sbjct: 430 YTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGD-------DI 482
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
ILTDI GLED GDMDFK+AGT G+TAIQ+DIK GI I + LE A KGR IL
Sbjct: 483 TILTDIQGLEDANGDMDFKVAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILG 542
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M I APR ++P++ TLK + D ++ +IGP G + +KI EE+G +I + DGT+
Sbjct: 543 KMLECIPAPRPSLKEHAPKITTLKINPDKIKDVIGPGGKVIKKITEESGAKIDIEEDGTV 602
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
V A +++ K +E ++ I E E+G IY G VT + +GAFVEF G++GL+H+S+L
Sbjct: 603 YVAAADQASANKAIEAINAITA-EPEIGKIYTGKVTRLMNFGAFVEFMPGREGLVHISQL 661
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+ E V +V DVV+VG ++ ++ + D +G + LS KA
Sbjct: 662 AKERVEKVEDVVNVGDEIVVKLVEIDAKGRMNLSRKA 698
>gi|378446669|ref|YP_005234301.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 711
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVAA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769978|ref|ZP_11484593.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416076363|ref|ZP_11585444.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416081081|ref|ZP_11586355.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444337102|ref|ZP_21151126.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004967|gb|EGY45457.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348011104|gb|EGY51089.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348657011|gb|EGY74608.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443547571|gb|ELT57042.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 743
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/701 (41%), Positives = 440/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 40 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 99
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 100 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 159
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E S L+LV A T +
Sbjct: 160 DLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAV 219
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L +AGK + ++ + + KV
Sbjct: 220 LMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTALINKV 279
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV + E +E S + + ++
Sbjct: 280 KALAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALESQI 337
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 338 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 397
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 398 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 457
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 458 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDK-------FVV 510
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 570
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 571 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 630
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+EVG YKG V + ++GAFV G ++GL+H+S+++
Sbjct: 631 AAVDKNAVQDVMARIEDITA-EVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAE 689
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ++ ++ + D +G I+L++K + P+ +
Sbjct: 690 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQD 730
>gi|406706888|ref|YP_006757241.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB5]
gi|406652664|gb|AFS48064.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB5]
Length = 690
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/706 (41%), Positives = 447/706 (63%), Gaps = 28/706 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ + +K+E E+ + I+LETGKIAR A+GA++ ET VL+TV +K + D+ PL+
Sbjct: 1 MFKVYKKEIEVAGKKISLETGKIARQADGAIIAKCGETVVLATVVGAKKVNPDVDYFPLS 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLFP F +EVQ++ +V+S
Sbjct: 61 VNYQEKYYAAGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDEFKNEVQLLPTVISY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + + DI++ A+SAAL +S +P+ GP+G R+G I G +++NP+ +EL S L+LV A
Sbjct: 121 DKENEADILSITASSAALAISGMPFLGPVGASRVGYIDGNYVLNPSKEELKKSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A ++E+++ ++ H V +E LA+ K + ++ +SE
Sbjct: 181 GTKNAVLMVESEANGLTEEEMLNAVKFGHEGFVPVIETIEDLAKDCRKPEWVFEKKDLSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKF------ERGEALDKIGQDVKKALEEECDEESLQV 347
++KV +E FTD F +R + +I KK EE + L V
Sbjct: 241 --VKKV-------LEDKFTDDLKKAFGTRDKQDRSNQISEITDKAKKLFEENENYTDLDV 291
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ + KR++R I+ R+DGR L +VRPI CE G LP HGS+LF+RG+TQ +
Sbjct: 292 -NSELKNLEKRIVRTDILKNKNRIDGRGLSDVRPISCEVGILPRTHGSALFTRGETQAIV 350
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
T TLG + Q++ESL G +RFMLHY+FPPF + E G R+G RRE+GHG LA +A+
Sbjct: 351 TTTLGTSDDEQKIESLDGLQKERFMLHYNFPPFSVGETG-RIGTGRREIGHGKLAWRAIN 409
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+ LP + FPYT R+ SE+ S+GS+SMATVCG S+ALMDAG+P++E +AG+++GL+ E
Sbjct: 410 SSLPSKESFPYTFRIVSEITESNGSSSMATVCGASLALMDAGVPIKEPIAGIAMGLIKEG 469
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D D+ +L+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ + L+
Sbjct: 470 D-------DFSVLSDILGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMDQALKQ 522
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL M + +S R+ +++P++ + D + +IG GA R+I E +G
Sbjct: 523 AKDGRIHILGEMNKALSVSRSDVGKHTPKMEKITVDKKDIAAVIGKGGATIREIVEVSGA 582
Query: 648 RISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
++ ++D G +TV A + K ++ + I + E+ IY G V + E+GAFV F G
Sbjct: 583 KVDINDEGEVTVAAPDEESRNKAMQMIKDITAKA-ELNKIYSGKVMKIMEFGAFVNFLGK 641
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
Q GL+H+SEL+ + V++V+DVV G ++ ++ IG D RG +KLS+K
Sbjct: 642 QDGLVHISELADKRVAKVTDVVKEGDEVKVKVIGFD-RGKVKLSIK 686
>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|378452099|ref|YP_005239459.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378701183|ref|YP_005183141.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378990593|ref|YP_005253757.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|418818265|ref|ZP_13373744.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|418823333|ref|ZP_13378742.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|419729821|ref|ZP_14256777.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|419732860|ref|ZP_14259764.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|419741321|ref|ZP_14268022.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|419742947|ref|ZP_14269616.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|419748979|ref|ZP_14275469.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|421360864|ref|ZP_15811140.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|421361116|ref|ZP_15811382.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|421369961|ref|ZP_15820136.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|421374405|ref|ZP_15824536.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|421378658|ref|ZP_15828737.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|421379654|ref|ZP_15829721.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|421384681|ref|ZP_15834704.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|421389677|ref|ZP_15839660.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|421396963|ref|ZP_15846888.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|421397821|ref|ZP_15847731.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|421405770|ref|ZP_15855595.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|421408704|ref|ZP_15858503.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|421411333|ref|ZP_15861099.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|421417732|ref|ZP_15867442.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|421421196|ref|ZP_15870865.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|421427427|ref|ZP_15877047.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|421431198|ref|ZP_15880784.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|421437256|ref|ZP_15886777.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|421441516|ref|ZP_15890985.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|421442829|ref|ZP_15892274.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|421447642|ref|ZP_15897039.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|421570366|ref|ZP_16016057.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|421574258|ref|ZP_16019883.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|421579333|ref|ZP_16024897.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|421582632|ref|ZP_16028165.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|421887001|ref|ZP_16318165.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|427554274|ref|ZP_18929145.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|427572043|ref|ZP_18933858.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|427592593|ref|ZP_18938659.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|427616658|ref|ZP_18943549.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|427640172|ref|ZP_18948426.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|427657523|ref|ZP_18953173.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|427662841|ref|ZP_18958139.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|427676999|ref|ZP_18962952.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|436633365|ref|ZP_20515635.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|436668329|ref|ZP_20517404.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|436793835|ref|ZP_20521878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|436807211|ref|ZP_20527254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436818102|ref|ZP_20534735.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832325|ref|ZP_20536615.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436848115|ref|ZP_20539932.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436860884|ref|ZP_20548068.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867888|ref|ZP_20553042.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436869584|ref|ZP_20553725.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436877272|ref|ZP_20558397.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891858|ref|ZP_20566558.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899236|ref|ZP_20570647.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436902747|ref|ZP_20573211.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436915170|ref|ZP_20580017.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919869|ref|ZP_20582650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436925843|ref|ZP_20586196.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436932029|ref|ZP_20589378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436946213|ref|ZP_20598041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955676|ref|ZP_20602551.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436966408|ref|ZP_20607077.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436970371|ref|ZP_20608901.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436979843|ref|ZP_20612988.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993748|ref|ZP_20618541.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437009384|ref|ZP_20623761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022525|ref|ZP_20628474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437028606|ref|ZP_20630698.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437042747|ref|ZP_20636260.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050422|ref|ZP_20640567.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061654|ref|ZP_20647020.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066570|ref|ZP_20649632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437072684|ref|ZP_20652601.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437083289|ref|ZP_20659032.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437098031|ref|ZP_20665486.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|437102356|ref|ZP_20666490.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|437118098|ref|ZP_20670161.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|437129774|ref|ZP_20676250.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|437141515|ref|ZP_20683199.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|437146403|ref|ZP_20686192.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|437153589|ref|ZP_20690695.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|437158226|ref|ZP_20693148.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|437169070|ref|ZP_20699463.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|437178544|ref|ZP_20704714.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|437181425|ref|ZP_20706539.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|437221272|ref|ZP_20713014.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|437260158|ref|ZP_20717558.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|437272297|ref|ZP_20724183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|437281480|ref|ZP_20728614.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|437296762|ref|ZP_20732563.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|437316110|ref|ZP_20737798.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|437326512|ref|ZP_20740274.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|437342011|ref|ZP_20745134.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|437417769|ref|ZP_20754188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|437446010|ref|ZP_20758732.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|437463615|ref|ZP_20763297.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|437480822|ref|ZP_20768527.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|437495482|ref|ZP_20772758.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|437504790|ref|ZP_20775272.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|437538206|ref|ZP_20781905.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|437567338|ref|ZP_20787609.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|437580734|ref|ZP_20792137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|437588105|ref|ZP_20793745.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|437604842|ref|ZP_20799021.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|437619590|ref|ZP_20803742.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|437633841|ref|ZP_20806811.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|437665619|ref|ZP_20814770.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|437675654|ref|ZP_20816807.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|437700174|ref|ZP_20823761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|437715690|ref|ZP_20828037.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|437732971|ref|ZP_20831974.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|437748558|ref|ZP_20833730.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|437804366|ref|ZP_20838920.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|437818239|ref|ZP_20842892.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|437991265|ref|ZP_20853785.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|438084930|ref|ZP_20858501.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|438100181|ref|ZP_20863822.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|438114811|ref|ZP_20870317.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|440763672|ref|ZP_20942709.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|440770550|ref|ZP_20949499.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|440775105|ref|ZP_20953990.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|445128664|ref|ZP_21380374.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|445141164|ref|ZP_21385277.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|445149567|ref|ZP_21389253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|445179534|ref|ZP_21397971.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|445226818|ref|ZP_21404065.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|445329584|ref|ZP_21413537.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|445344962|ref|ZP_21417927.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|445356905|ref|ZP_21421923.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|452122898|ref|YP_007473146.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
gi|81361497|sp|Q5PL97.1|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81521548|sp|Q8ZLT3.1|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611314|sp|A9N728.2|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611318|sp|Q57JI3.2|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702684|sp|B5QZV4.1|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702685|sp|B5REN2.1|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702686|sp|B5BGJ1.1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096718|sp|C0PZ50.2|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|379983378|emb|CCF90438.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|381291999|gb|EIC33209.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|381296123|gb|EIC37231.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|381302212|gb|EIC43258.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|381312756|gb|EIC53550.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|381312975|gb|EIC53768.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|392786227|gb|EJA42784.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|392786677|gb|EJA43233.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|395981431|gb|EJH90653.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|395982084|gb|EJH91305.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|395993843|gb|EJI02933.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|395994529|gb|EJI03605.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|395994993|gb|EJI04058.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|396005829|gb|EJI14801.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|396009417|gb|EJI18350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|396017236|gb|EJI26102.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|396018313|gb|EJI27175.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|396021998|gb|EJI30812.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|396028119|gb|EJI36881.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|396032631|gb|EJI41350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|396042567|gb|EJI51189.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|396042838|gb|EJI51458.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|396046359|gb|EJI54947.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|396050404|gb|EJI58929.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|396051782|gb|EJI60297.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|396055024|gb|EJI63516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|396063673|gb|EJI72062.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|396071886|gb|EJI80202.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|396074536|gb|EJI82824.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|402521867|gb|EJW29199.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|402524361|gb|EJW31660.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|402525759|gb|EJW33045.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|402532812|gb|EJW40000.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|414015729|gb|EKS99529.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|414028817|gb|EKT11984.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|414030471|gb|EKT13570.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|414033319|gb|EKT16277.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|414043934|gb|EKT26401.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|414044452|gb|EKT26895.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|414049458|gb|EKT31669.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|414056981|gb|EKT38755.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|434959503|gb|ELL52950.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|434963048|gb|ELL56184.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|434968167|gb|ELL60919.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434970646|gb|ELL63207.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434980924|gb|ELL72811.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434985328|gb|ELL77015.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434990991|gb|ELL82519.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434993040|gb|ELL84479.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435002724|gb|ELL93775.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435005987|gb|ELL96907.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435008773|gb|ELL99584.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435012371|gb|ELM03046.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435014129|gb|ELM04721.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|435019177|gb|ELM09621.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435023252|gb|ELM13548.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029704|gb|ELM19762.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435035785|gb|ELM25630.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435038105|gb|ELM27887.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435044542|gb|ELM34225.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435046052|gb|ELM35678.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435046818|gb|ELM36433.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435058174|gb|ELM47529.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435065425|gb|ELM54531.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435067208|gb|ELM56269.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068399|gb|ELM57427.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435076462|gb|ELM65245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083397|gb|ELM71998.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435084642|gb|ELM73227.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088138|gb|ELM76595.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093126|gb|ELM81466.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097376|gb|ELM85635.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106675|gb|ELM94692.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|435108862|gb|ELM96827.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435110214|gb|ELM98147.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435122981|gb|ELN10485.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|435126994|gb|ELN14388.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|435127683|gb|ELN15043.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|435133675|gb|ELN20833.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|435136648|gb|ELN23738.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|435141340|gb|ELN28282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|435148798|gb|ELN35512.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|435152011|gb|ELN38642.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|435152869|gb|ELN39491.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|435164809|gb|ELN50881.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|435166385|gb|ELN52368.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|435169008|gb|ELN54818.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|435169243|gb|ELN55042.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|435179189|gb|ELN64339.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|435180586|gb|ELN65694.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|435192439|gb|ELN76970.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|435193677|gb|ELN78156.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|435200707|gb|ELN84678.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|435202404|gb|ELN86258.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|435210399|gb|ELN93670.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|435217998|gb|ELO00405.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|435218892|gb|ELO01293.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|435226829|gb|ELO08382.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|435235078|gb|ELO15931.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|435235876|gb|ELO16658.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|435239052|gb|ELO19660.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|435240985|gb|ELO21375.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|435256785|gb|ELO36079.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|435258250|gb|ELO37517.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|435258870|gb|ELO38130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|435265206|gb|ELO44091.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|435274235|gb|ELO52359.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|435277467|gb|ELO55416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|435281895|gb|ELO59542.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|435284993|gb|ELO62410.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|435287368|gb|ELO64571.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435302964|gb|ELO78891.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|435307913|gb|ELO82943.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|435311997|gb|ELO86012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|435319335|gb|ELO92174.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|435325141|gb|ELO97015.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|435328635|gb|ELP00101.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|435336756|gb|ELP06560.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|436411248|gb|ELP09201.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|436411719|gb|ELP09667.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|436419304|gb|ELP17182.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|444851373|gb|ELX76464.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|444854712|gb|ELX79771.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|444857809|gb|ELX82807.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|444867444|gb|ELX92130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|444872487|gb|ELX96825.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|444878934|gb|ELY03046.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|444879628|gb|ELY03723.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|444886863|gb|ELY10604.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|451911902|gb|AGF83708.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
Length = 711
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|352683782|ref|YP_004895766.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
intestini RyC-MR95]
gi|350278436|gb|AEQ21626.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
intestini RyC-MR95]
Length = 692
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/697 (43%), Positives = 440/697 (63%), Gaps = 23/697 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQ 120
E+G R +T+ETGKIA+ ANG+V++ ET V+ VT + D+ R DF PLTVD++EK
Sbjct: 7 ELGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGT--DTPREGVDFFPLTVDFEEKM 64
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++RREG P E +L R+IDRPIRP+FP G++++VQ++A+ +S D PD
Sbjct: 65 YAVGKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPD 124
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I A S AL +SDIP+ GPI +R+GR+ G+FI+NPT+++ ++S++N+ A T+E L
Sbjct: 125 IPAMIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVAGTKEAIL 184
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A+E+SE+ + + H E K + Q ++ + GK K E+ + E +++
Sbjct: 185 MVEAGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPEALSKEIM 244
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLPKAVDTVRK 357
E I DP K R DK+ + K+A+ E E ES + V + K
Sbjct: 245 EYGEPKIHDALMDPD--KLHR----DKMVSETKEAILEHFVELYPESEIDIAHIVQKLVK 298
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+V R I + +R DGR LDEVRPI CE G L HG SLF+RG TQVL + L EA
Sbjct: 299 KVFRHIITHDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREA 358
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L TKR++ HY+FPP+ + E RRE+GHG LAE+ALL V+P E +FP
Sbjct: 359 QTLDGLGTELTKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFP 418
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SEV+ S+GS+SMA+ C +++LMDAG+P++ V+GV++GLV E D D
Sbjct: 419 YTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGD-------DI 471
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
ILTDI GLED GDMDFK+AGT G+TAIQ+DIK GI I + LE A KGR IL
Sbjct: 472 TILTDIQGLEDANGDMDFKVAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILG 531
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M I APR ++P++ TLK + D ++ +IGP G + +KI EE+G +I + DGT+
Sbjct: 532 KMLECIPAPRPSLKEHAPKITTLKINPDKIKDVIGPGGKVIKKITEESGAKIDIEEDGTV 591
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
V A +++ K +E ++ I E E+G IY G VT + +GAFVEF G++GL+H+S+L
Sbjct: 592 YVAAADQASANKAIEAINAITA-EPEIGKIYTGKVTRLMNFGAFVEFMPGREGLVHISQL 650
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+ E V +V DVV+VG ++ ++ + D +G + LS KA
Sbjct: 651 AKERVEKVEDVVNVGDEIVVKLVEIDAKGRMNLSRKA 687
>gi|397690716|ref|YP_006527970.1| polynucleotide phosphorylase/polyadenylase [Melioribacter roseus
P3M]
gi|395812208|gb|AFN74957.1| polynucleotide phosphorylase/polyadenylase [Melioribacter roseus
P3M]
Length = 703
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 289/695 (41%), Positives = 449/695 (64%), Gaps = 14/695 (2%)
Query: 58 TFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQ 117
F +E +IG + ETGK+A+ +NGAV++ +T VL T + + DF PL+V+Y+
Sbjct: 2 VFTKEVQIGRHKLKFETGKLAKQSNGAVMVSYGDTMVLVTAVAGEVRDDIDFFPLSVEYR 61
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK FA G IP +++REG P ++E+L R+IDRPIRPLFP +Y++ Q+ A V S D +
Sbjct: 62 EKSFAAGKIPGGFIKREGRPSDKEVLSARLIDRPIRPLFPDNYYNDTQLAAFVYSFDNEN 121
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPD++AA SAAL++SDIP+ PIG +R+GR+ GQF++NP++ E+ SD+ LV A T
Sbjct: 122 DPDVIAACGASAALVISDIPFLEPIGEVRVGRLNGQFVINPSLQEIEESDIELVVAGTES 181
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E+SE+D+ L+ AH E K + Q L E GK K E + + ++
Sbjct: 182 SIMMVEGEAKEVSEEDMLNALKFAHDEIKKIVAAQKELRELCGKPKMEVPPVELDQALVD 241
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
+V+ LA ++ + +K ER + +K ++ E E +V+ + + K
Sbjct: 242 EVNRLAYDKMKTIVAS-VLTKEERSQK-NKELEEEVVEQLAEKFPEQEKVIKTILHDMEK 299
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R+RI++EG+R+DGR+ ++RPI E G LP HGS+LF+RG+TQ L T+TLG +
Sbjct: 300 ELMRQRILSEGLRLDGRKTTDIRPISIEVGLLPRPHGSALFTRGETQSLTTLTLGTKQDE 359
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L+ KRF+LHY+FPPF + EVG+ G+ RREVGHG LAE+AL ++PPE FP
Sbjct: 360 QIIDGLMTEFRKRFILHYNFPPFSVGEVGRYSGVGRREVGHGNLAERALKNMVPPEEQFP 419
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
Y +R+NS+++ S+GS+SMATVC GS+ALMD G+P+++ VAG+++GL+ E D +Y
Sbjct: 420 YMIRLNSDILESNGSSSMATVCAGSLALMDGGVPIKKAVAGIAMGLIKEGD-------NY 472
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DILG EDHLGDMDFK+AGT+ G+TA Q+DIK GI +I+ + L A +GR+ IL+
Sbjct: 473 AILSDILGNEDHLGDMDFKVAGTKDGITAFQMDIKIQGISYEIMEKALAQAKEGRMHILE 532
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTL 656
M IS PR + +P L T K D + +IGP G + +KI+++ I++ DGT+
Sbjct: 533 KMNEVISEPRPTISQYAPTLLTTKIPTDKIGTVIGPGGKVIQKIQKDYNVEIAIDEDGTV 592
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + ++ E + ++ + EVG Y G V + ++GAFVE G QGLLH+S++
Sbjct: 593 NISGNDSKLAKEAREYIKWMTA-DPEVGKNYDGKVVRLVDFGAFVEILPGIQGLLHISQI 651
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSL 751
++ +++VSDV+ G + ++ + + GN K SL
Sbjct: 652 DNKRINKVSDVLKEGDIVRVKLLS--IEGN-KYSL 683
>gi|421781345|ref|ZP_16217812.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica A30]
gi|407756554|gb|EKF66670.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica A30]
Length = 707
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/713 (41%), Positives = 448/713 (62%), Gaps = 26/713 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K +++ I+E +V+
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LAE+ + + K ER +D I V +AL +E D +Q + + +V K
Sbjct: 248 ELAESRLGDAYH--ITEKQERYAQVDAIKSSVVEALLAQDETLDASEIQDI---LGSVEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFP
Sbjct: 363 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NF 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILG 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
ME+ IS PR + +PR+ T++ + D ++ +IG G++ R + EETG I + DGT+
Sbjct: 536 VMEQAISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S++
Sbjct: 596 KIAATDGEKAKFAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK--------AVSPRPEAD 761
+ + V +V+D + +GQ++ ++ + D +G ++LS+K + +P PEA+
Sbjct: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAPAPEAE 707
>gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase [Escherichia coli O127:H6 str.
E2348/69]
gi|254782721|sp|B7UJ59.1|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O127:H6 str. E2348/69]
Length = 711
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GP G R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|418464891|ref|ZP_13035830.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756846|gb|EHK91003.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 745
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/718 (41%), Positives = 446/718 (62%), Gaps = 25/718 (3%)
Query: 53 TKVLETFKEE---------FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG 103
T +L FK+E F+ G +TLETG IAR A AV+ MD+T V TV + K
Sbjct: 23 TSLLFIFKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKD 82
Query: 104 -DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYH 162
+DF PLTV+YQE+ +A G IP + +REG P E E L+ R+IDRPIRPLFP GF++
Sbjct: 83 VKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFN 142
Query: 163 EVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDE 222
E+QV+A+V+S + + PD++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E
Sbjct: 143 EIQVVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNE 202
Query: 223 LSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ 282
S L+LV A T + LM++ +A ++E+ + A + H + +E L +AGK
Sbjct: 203 QKQSRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKP 262
Query: 283 KKEYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEEC 340
+ ++ + + KV LAEA + + T+ + R +D I DV + E
Sbjct: 263 RWDWVAPEPNTALINKVKALAEARLGDAYRITEKQF----RYAQIDAIKADVIAQITAED 318
Query: 341 DEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSR 400
+E S + + +++R RIIA R+DGR +D VR + +G LP HGS++F+R
Sbjct: 319 EEISEGKIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTR 378
Query: 401 GDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT 460
G+TQ L TLG +AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG
Sbjct: 379 GETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGR 438
Query: 461 LAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVS 520
LA++ + AV+P +FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG++
Sbjct: 439 LAKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 498
Query: 521 VGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDI 580
+GLV E D + +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I
Sbjct: 499 MGLVKEED-------KFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEI 551
Query: 581 ICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRK 640
+ L A R+ IL ME+ I APR +PR+ T+K D ++ +IG GA+ R
Sbjct: 552 MQIALNQAKSARMHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRA 611
Query: 641 IEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGA 699
+ EETG I + DGT+ + A +++ ++ V+ +++ I E+EVG IYKG V + ++GA
Sbjct: 612 LTEETGTSIDIDDDGTVKIAAVDKNAVQDVMARIEDITA-EVEVGAIYKGKVIRLADFGA 670
Query: 700 FVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
FV G ++GL+H+S+++ E V +VSD + VGQ++ ++ + D +G I+L++K + P+
Sbjct: 671 FVAIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPK 728
>gi|417851111|ref|ZP_12496891.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
gi|338220035|gb|EGP05616.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
Length = 714
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/705 (41%), Positives = 450/705 (63%), Gaps = 17/705 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GFY+E+Q++A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + ++ +AGK + ++ + +EKV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKV 245
Query: 300 SNLAEAHI-EAVFTDPSYSKFERGEAL--DKIGQDVKKALE-EECDEESLQVLPKAVDTV 355
+AEA + EA +++E+ +A+ D I Q + E E+ EE + + A+++
Sbjct: 246 KAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEEKIVDIFTALES- 304
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG
Sbjct: 305 --QIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 362
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +
Sbjct: 363 DAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAE 422
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 423 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK------ 476
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A RL I
Sbjct: 477 -FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHI 535
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DG
Sbjct: 536 LGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDG 595
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + A + + ++V+ +++ I E+E G +YKG VT + ++GAFV G ++GL+H+S
Sbjct: 596 TVKIAAVDGNSAKEVMARIEDITA-EVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHIS 654
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+++ E V +VSD ++VGQ+++++ + D +G I+L++K V+P+ E
Sbjct: 655 QIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 699
>gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|378961375|ref|YP_005218861.1| hypothetical protein STBHUCCB_33840 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|374355247|gb|AEZ47008.1| hypothetical protein STBHUCCB_33840 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 721
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/711 (41%), Positives = 446/711 (62%), Gaps = 18/711 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGD 104
PS G + L EF+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + + L E +
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDET 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNSKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 700
>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
Length = 712
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/705 (41%), Positives = 441/705 (62%), Gaps = 12/705 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + S + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSSAAKNVMVRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E + +
Sbjct: 656 ERVEKVSDYLQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAE 700
>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus nematophila ATCC 19061]
Length = 712
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/713 (41%), Positives = 453/713 (63%), Gaps = 17/713 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+L +F+ G +T+ETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E LV R+IDRP+RPLFP GF +EVQ++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A ++E + + H + +E LA +AGK+K ++ I++
Sbjct: 181 GTESAVLMVESEAELLTEDQMLGAVVFGHEQQQIVIENINSLAAEAGKEKWDWAPEPINQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV----LP 349
++V+ LAE+ + + K ER ++ I ++V + E E+ +++ +
Sbjct: 241 SLHDRVAELAESRLGDAYR--ITEKQERYAQVNIIKEEVSVVILAESAEKGVELEEGEVL 298
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A+ + K V+R R+++ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L
Sbjct: 299 DALSGLEKNVVRGRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAA 358
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV
Sbjct: 359 TLGTERDAQVIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV 418
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P ++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 MPNASEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD- 477
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 478 ------NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAK 531
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL ME+ I +PR +PR+ T+K + D ++ +IG G++ R + EETG I
Sbjct: 532 GARLHILSVMEQAIESPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTI 591
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A + + +++ I E+EVG IY G VT + ++GAFV GG++
Sbjct: 592 EIEDDGTVKIAATDGDKARHAISRIEEITA-EVEVGRIYTGKVTRIVDFGAFVAIGGGKE 650
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
GL+H+S+++ + V +V+D + VGQ++ ++ + D +G I+LS+K AV+ EA
Sbjct: 651 GLVHISQIADKRVEKVTDYLQVGQEVPVKVLEIDRQGRIRLSMKEAVATTDEA 703
>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase [Nitrobacter winogradskyi Nb-255]
gi|123614401|sp|Q3SWP5.1|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
Length = 718
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 308/719 (42%), Positives = 447/719 (62%), Gaps = 23/719 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRP+RPLF G+ +E QV+ +VLS D + D
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS P+ GPIG R+G I ++++NPT+DE+ + L+LV A T +
Sbjct: 126 PDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEIVDTQLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE+ + + H ++ I LAEKA K+ +E L +I + +EK
Sbjct: 186 VLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKEPRE--LKVIDDTEIEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTV 355
+ L E + A + P K +R A+ K+ + E E L A +
Sbjct: 244 EMLGLVEQDLRAAYAIPV--KQDRYAAVGKVKEKALAHFFPEGQEPKYDKLRVAGVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR + VR I E+G LP HGS+LF+RG+TQ + TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDSLAGTYKETFLLHYNFPPYSVGETGRLGGAKRREIGHGKLAWRAIRPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMA+VCG S++LMDAG+PL+ AG+++GL+ E GE
Sbjct: 422 FPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILE-----GE-- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR+ I
Sbjct: 475 RYAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + + R + ++PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + ++ ++ + I + EVG IY+G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGESIKAAIKWIKS-IASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV--KGVVEGSVP 771
+L+ V + SDVV G ++ ++ +G D RG +LS+K V D+ K EG P
Sbjct: 654 QLAAGRVQKTSDVVKEGAKVKVKLLGFDDRGKTRLSMKVVDQETGEDLEAKQKAEGDAP 712
>gi|423141810|ref|ZP_17129448.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379050982|gb|EHY68874.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 721
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/711 (41%), Positives = 446/711 (62%), Gaps = 18/711 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGD 104
PS G + L +F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + L E +
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIDQLIAEDET 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 700
>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
Length = 709
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 440/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|386758393|ref|YP_006231609.1| polynucleotide phosphorylase [Bacillus sp. JS]
gi|384931675|gb|AFI28353.1| polynucleotide phosphorylase [Bacillus sp. JS]
Length = 705
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/689 (43%), Positives = 442/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QFI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + G+ H E + + Q + GK+K E KL I E+ EKV LAE +
Sbjct: 195 EVPEEIMLEGIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKSAVVAKFEDEEHDEDTIKQVKQILSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESG 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|416893567|ref|ZP_11924717.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus ATCC 33389]
gi|347813857|gb|EGY30510.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus ATCC 33389]
Length = 733
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 443/702 (63%), Gaps = 12/702 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 30 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 89
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 90 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 149
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT++E S L+LV A T +
Sbjct: 150 DLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTDKAV 209
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 210 LMVESEAGILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKV 269
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E + + + ++
Sbjct: 270 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQISAEDEEVAEGKIIDIFTALESQI 327
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 328 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 387
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 388 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 447
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 448 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK-------FVV 500
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 501 LSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 560
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 561 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 620
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 621 AAVDKNAVQDVMARIEDITA-EVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAE 679
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
E V +VSD + VGQ++ ++ + D +G I+L++K ++P+ EA
Sbjct: 680 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKEEA 721
>gi|345428773|ref|YP_004821889.1| polynucleotide phosphorylase [Haemophilus parainfluenzae T3T1]
gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
parainfluenzae T3T1]
Length = 712
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/705 (41%), Positives = 441/705 (62%), Gaps = 12/705 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLE G IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A TSAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGTSAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + S + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSSAAKNVMARIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E + +
Sbjct: 656 ERVEKVSDYLQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAE 700
>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
Length = 709
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|421263866|ref|ZP_15714884.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. P52VAC]
gi|401688993|gb|EJS84505.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. P52VAC]
Length = 714
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/704 (41%), Positives = 442/704 (62%), Gaps = 15/704 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GFY+E+Q++A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + ++ +AGK + ++ + +EKV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD---TVR 356
+AEA + + K R E +D I DV + E E K VD T+
Sbjct: 246 KAIAEARLGEAYR--ITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTTLE 303
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +
Sbjct: 304 SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 363
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +F
Sbjct: 364 AQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTFAEF 423
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 424 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK------- 476
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A RL IL
Sbjct: 477 FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHIL 536
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT
Sbjct: 537 GVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGT 596
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + + ++V+ +++ I E+E G +YKG VT + ++GAFV G ++GL+H+S+
Sbjct: 597 VKIAAVDGNSAKEVMARIEDITA-EVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQ 655
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
++ E V +VSD ++VGQ+++++ + D +G I+L++K V+P+ E
Sbjct: 656 IAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 699
>gi|333925319|ref|YP_004498898.1| polyribonucleotide nucleotidyltransferase [Serratia sp. AS12]
gi|333930272|ref|YP_004503850.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica AS9]
gi|386327143|ref|YP_006023313.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS13]
gi|333471879|gb|AEF43589.1| Polyribonucleotide nucleotidyltransferase [Serratia plymuthica AS9]
gi|333489379|gb|AEF48541.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS12]
gi|333959476|gb|AEG26249.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS13]
Length = 707
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/713 (41%), Positives = 448/713 (62%), Gaps = 26/713 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LAE+ + + K ER +D I V +AL +E D +Q + + +V K
Sbjct: 248 ELAESRLGDAYH--ITEKQERYAQVDAIKSSVVEALLAQDETLDASEIQDI---LGSVEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFP
Sbjct: 363 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NF 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILG 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
ME+ IS PR + +PR+ T++ + D ++ +IG G++ R + EETG I + DGT+
Sbjct: 536 VMEQAISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S++
Sbjct: 596 KIAATDGEKAKFAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK--------AVSPRPEAD 761
+ + V +V+D + +GQ++ ++ + D +G ++LS+K + +P PEA+
Sbjct: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAPAPEAE 707
>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|187611438|sp|Q1CM51.2|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
Length = 705
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/698 (42%), Positives = 442/698 (63%), Gaps = 13/698 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SA L LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
V +V+D + +GQ + ++ + D +G I+LS+K A +P
Sbjct: 658 RVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTP 695
>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittGG]
gi|187610273|sp|A5UG34.1|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
Length = 709
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 442/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG +R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E + + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEINEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|414176948|ref|ZP_11431177.1| polyribonucleotide nucleotidyltransferase [Afipia broomeae ATCC
49717]
gi|410887101|gb|EKS34913.1| polyribonucleotide nucleotidyltransferase [Afipia broomeae ATCC
49717]
Length = 714
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 300/699 (42%), Positives = 442/699 (63%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETIVLATVVAAKTPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A+SAAL LS P+ GPIG R+G I ++++NPT+DE++ ++L+LV A T +
Sbjct: 127 DILALVASSAALTLSGAPFQGPIGAARVGFINDEYVLNPTLDEMADTNLDLVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E+ + + H ++ I LAEKA K+ +E +S + ++K
Sbjct: 187 LMVESEAKELNEEIMLGAVMFGHRHFQPVIKAIIELAEKAAKEPRE--VSSVDNSAIDKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ + EA + + P K +R A+ ++ + V E E L A +
Sbjct: 245 MRTVGEAELRKAYAIPV--KQDRYAAVGEVKKKVMDHFFPEGQEPKYDKLRVAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
V+R I+ G R+DGR + VRPI E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 303 ADVVRNNILDTGKRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G +RF+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLP ++F
Sbjct: 363 EQYIDSLSGTYKERFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPAHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E D
Sbjct: 423 PYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGD-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITEAIMKQALAQAKDGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + ++PR+ L+ D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMAKALTNARAELGEHAPRIEVLQIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + N + ++ + I + EVG IY G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASANGESIRAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ V + SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 655 LAANRVQKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKVV 693
>gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|81512815|sp|Q8Z3I0.1|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 711
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L EF+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNSKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
PV-4]
gi|187611300|sp|A3QGU0.1|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
Length = 700
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/700 (41%), Positives = 442/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+ +V+S D + P++
Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G + G++I+NPT+ +L S L L A T LM
Sbjct: 128 ISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAGTENAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + + H + ++ L + K ++ + +E+ + KV +
Sbjct: 188 VESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEELVAKVKD 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R +D + K+AL E + + + + ++ K+V+R
Sbjct: 248 LAEAGLTEAYQ--IVVKQDRYAQVDVVKTAAKEALLAENPDADAREIDGLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 SRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY++R
Sbjct: 366 SIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEFPYSIR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS R + ++PR+ TLK + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 539 AISGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + ++ I E+EVG +Y G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 599 ANGDATKEAIRRIQEITA-EVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + VGQ++ ++ + D +G ++LS+K P+ EA
Sbjct: 658 VANVSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEA 697
>gi|410447381|ref|ZP_11301477.1| polyribonucleotide nucleotidyltransferase [SAR86 cluster bacterium
SAR86E]
gi|409979656|gb|EKO36414.1| polyribonucleotide nucleotidyltransferase [SAR86 cluster bacterium
SAR86E]
Length = 697
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/701 (42%), Positives = 440/701 (62%), Gaps = 15/701 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
L T EFE G++ + +ETGK+AR A ++++ +D VL+T+ + K D +DF PL V
Sbjct: 6 LNTQSVEFEYGNKTVKIETGKVARQATSSIIVTIDNLVVLTTMVARKEADPRKDFFPLAV 65
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
YQEK +A G IP Y +RE P E+E L R+IDRPIRPLFP F +E+Q+ +VLS+D
Sbjct: 66 FYQEKFYAAGKIPGGYFKREARPTEQETLTSRLIDRPIRPLFPEDFKNEIQIFCTVLSAD 125
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+PDI + SAAL +S +P+ GP+G R+G I +++NP+ EL S L++V A
Sbjct: 126 KNINPDIASLIGASAALSISGVPFQGPLGAARVGFIDSNYVLNPSPQELEESMLDMVVAG 185
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + LM++ +A E+SE + + H E K ++ L K E+ ++ +
Sbjct: 186 TEDAVLMVESEASELSEDLMLGSVLYGHQEMQKVIKACTDLRAKVNPTPWEFSADELTAE 245
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+S L I + F +K +RG+A++ I + + A EE D+ L A +
Sbjct: 246 YKLNISELYTDEIASAFK--IANKSDRGDAINAIREKINDA-NEELDDIERGKLMNAFKS 302
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V K V+RK I++ R+DGR LD VRPI+ E+ LP +HGSSLF+RG+TQ L TLG+
Sbjct: 303 VEKDVVRKSILSNEPRIDGRDLDTVRPIFVETNILPSVHGSSLFTRGETQALVAATLGST 362
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQR+ESL G + FMLHY+FP + + E+G +G RRE+GHG LA++A+ AVLP
Sbjct: 363 RDAQRIESLNGEESNTFMLHYNFPAYSVGEIGMPLGPKRREIGHGNLAKRAIKAVLPNSE 422
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DF YT+RV SE+ S+GS+SMA+VCG S++LMDAG+P+ VAG+++GL+ E +
Sbjct: 423 DFGYTLRVVSEITESNGSSSMASVCGTSLSLMDAGVPISNPVAGIAMGLIKEEN------ 476
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
++ +LTDILG EDHLGDMDFK+AGT+ GVTA+Q+DIK GI +I+ LE A R+
Sbjct: 477 -EFAVLTDILGDEDHLGDMDFKVAGTKEGVTALQMDIKVQGITAEIMESALEKAKNARMH 535
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL+ M ISAP+ D N+P + + D ++ +IG GA+ + ++ +TG + V+ D
Sbjct: 536 ILEKMNDVISAPKELSD-NTPAMKKITVHQDKIKEIIGKGGAVIKGMQADTGASVDVNDD 594
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G +T+ + +S+M+ LE ++ II + E+ +Y+G V + ++GAFV G+ GLLHV
Sbjct: 595 GVVTIFGETQSIMKAALEIIEGII-EDPELDKVYEGTVVKIVDFGAFVNILPGKDGLLHV 653
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+S E V VSDV+S G + ++ IG D RG +KLS K +
Sbjct: 654 SEISAERVENVSDVLSEGDVIKVKLIGFD-RGKMKLSKKVL 693
>gi|416106827|ref|ZP_11590076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348006029|gb|EGY46495.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 743
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/701 (41%), Positives = 440/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 40 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 99
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 100 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 159
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E S L+LV A T +
Sbjct: 160 DLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAV 219
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L +AGK + ++ + + KV
Sbjct: 220 LMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTALINKV 279
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV + E +E S + + ++
Sbjct: 280 KALAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALESQI 337
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 338 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 397
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 398 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 457
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 458 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDK-------FVV 510
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 570
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 571 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 630
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+EVG YKG V + ++GAFV G ++GL+H+S+++
Sbjct: 631 AAVDKNAVQDVMARIEDITA-EVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAE 689
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ++ ++ + D +G I+L++K + P+ +
Sbjct: 690 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQD 730
>gi|395490717|ref|ZP_10422296.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. PAMC
26617]
Length = 804
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/704 (41%), Positives = 446/704 (63%), Gaps = 17/704 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQ 120
+ G + +TLETG++AR A+GAV+ + ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 10 QWGGKTLTLETGRVARQADGAVMATLGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEKY 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G IP + +RE E+E L R+IDRPIRPLFP GFY+E+ V+ VLS DG+ +PD
Sbjct: 68 SAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENEPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A A SAAL +S +P+ GPIG R+G I G++I+NPT++++ +L+LV A T + +
Sbjct: 128 MLAMVAASAALTISGVPFMGPIGAARVGYIDGEYILNPTVEQIKAGELDLVVAATGDAVM 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E+SE+ + ++ AH + I LAE+A K E +K+
Sbjct: 188 MVESEAKELSEEVMLGAVQFAHKACREVCNLVIDLAEQAAKDPWEMPAQSDLTAAKDKLR 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
L A I A + SK R L ++ ++A + ++ + K V + ++
Sbjct: 248 KLVGADIAAAYKVTDKSK--RSTMLYEVRAKAREAFADAAPQDQMAA-GKLVKKLEGEIV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R I+ +G R+DGR ++RPI LP HGS+LF+RG+TQ +CT TLG Q +
Sbjct: 305 RGAILKDGTRIDGRTTTQIRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKDAEQMI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +++FPYT+
Sbjct: 365 DGLTGLSYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTI 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E KD+ +L
Sbjct: 425 RVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG-------KDFAVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I+ L A +GR IL M
Sbjct: 478 SDILGDEDHLGDMDFKVAGTEAGITTMQMDIKIAGITDEIMRVALAQAKEGRAHILGEMN 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ + + RT+ ++PR+ TL+ D +R +IG G + R+I +TG ++ + D G + +
Sbjct: 538 KALDSTRTELSAHAPRIETLQIDKAKIREVIGTGGKVIREIVAQTGAKVDIDDEGLIKIS 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + +E ++ + I+ E EVG +Y G V ++ ++GAFV F GG+ GL+HVSE+ +E
Sbjct: 598 SSDTAQIEAAIKWIKGIV-EEAEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
V +VSDV+S GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 657 RVEKVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAEIE 700
>gi|381201149|ref|ZP_09908278.1| polynucleotide phosphorylase/polyadenylase [Sphingobium yanoikuyae
XLDN2-5]
Length = 771
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/701 (42%), Positives = 438/701 (62%), Gaps = 19/701 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K E+ + +TLETG+IAR A+ AV+ ET VL VT++K SV+ DF PLTV Y
Sbjct: 6 KVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+A V+S DG+
Sbjct: 64 QEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVMSFDGE 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G++ +NP++DE+ +L+LV A T
Sbjct: 124 SEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATG 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A+E+SE + + AH + K ++ I+LAEKA K E
Sbjct: 184 NAVMMVESEAKELSEDVMLGAVLFAHEASKKVVDAIIQLAEKAAKDPWEMAKGDDLGALK 243
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVD 353
K+ +L I A + TD S R AL++ K + E+ D +++ K
Sbjct: 244 TKLKDLIGGDIAAAYKLTDKS----ARSNALNEARAKAKASFAEDGLDAQTVMAGIKLTK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R I+ +G R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 300 KLEAEIVRGAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +
Sbjct: 360 KDAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTK 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 420 DEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG------ 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR
Sbjct: 474 -SDFAVISDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFETALRQAKEGRA 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 533 HILGEMNKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDD 592
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
+ ++ + + + +K I E EVG IY G V ++ ++GAFV F GG+ GL+HV
Sbjct: 593 EGIIKISSSDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHV 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 653 SEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 716
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/717 (41%), Positives = 446/717 (62%), Gaps = 12/717 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAE + + K R E +D I +V L E + S + + + ++
Sbjct: 246 KALAETRLGDAYR--IVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + + LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EET I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IY G VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDGNAAKAVMARIEEIVA-EVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQ 775
E V RV+D ++VGQ++ ++ + D +G I+L++K ++ EA+ + V +V +Q
Sbjct: 656 ERVERVADYLTVGQEVQVKVVEIDRQGRIRLTMKDINNTNEANAEETVAENVVETEQ 712
>gi|448240208|ref|YP_007404261.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
WW4]
gi|445210572|gb|AGE16242.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
WW4]
gi|453064994|gb|EMF05958.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
VGH107]
Length = 705
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/711 (42%), Positives = 445/711 (62%), Gaps = 24/711 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LAEA + + K ER +D I V + L +E D +Q + + + K
Sbjct: 248 ELAEARLGDAYH--ITEKQERYAQVDAIKDSVVETLLAQDETLDAGEIQDI---LGNLEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFP
Sbjct: 363 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEAD-------NY 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILG 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
ME+ IS PR +PR+ T++ + D ++ +IG G++ R + EETG I + DGT+
Sbjct: 536 VMEQAISTPRGDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S++
Sbjct: 596 KIAATDGEKAKFAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK------AVSPRPEAD 761
+ + V +V+D + +GQ++ ++ + D +G ++LS+K A SP PEA+
Sbjct: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAMAPEAGSPAPEAE 705
>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|257096681|sp|B2ICY4.1|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 715
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 303/716 (42%), Positives = 451/716 (62%), Gaps = 19/716 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ E +EE E R + LETGKIAR A+GA+ ET VL+TV S+K SV+ DF P
Sbjct: 3 MFEIHREEIEWAGRKLVLETGKIARQADGAIFATYGETTVLATVVSAK--SVKPGVDFFP 60
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK FA G IP Y +REG P ERE LV R+IDRPIRPLFP G+ +E QV+ +VL
Sbjct: 61 LTVNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVL 120
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
+ D + DPDI++ A+SAAL LS +P+ GP+G R+ + GQ+ +NPT+DE+ + L+LV
Sbjct: 121 AHDLENDPDILSMVASSAALTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLV 180
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T + LM++ +A+E+SE + + H ++ IRLAEKA K+ ++ ++
Sbjct: 181 VAGTSDAVLMVESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKEPRDL---IL 237
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLP 349
++T +V+ LA A + SK +R A+D + V L E ++
Sbjct: 238 PDKTEVEVAVLAIAENDLREAYKITSKQDRYAAVDAVKAKVFGDLLPAEGEAKFPKDLVA 297
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ ++ +V+R I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 298 EVFHDLQAKVVRWNILDNGIRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVA 357
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +
Sbjct: 358 TLGTGEDEQLIDNLEGTYRERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPM 417
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP +FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 418 LPTPAEFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILE--- 474
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE Y +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A
Sbjct: 475 --GE--RYAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKITGINEEIMRVALGQAK 530
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GRL IL M + I+ R + +PR+ TL+ + +R +IG G + R+I E+TG +I
Sbjct: 531 EGRLHILGEMAKAITGARAELGEFAPRIETLRIPTEKIREVIGTGGKVIREICEKTGAKI 590
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ V + + + ++ + + I + EVG IY G V V ++GAFV F G +
Sbjct: 591 NIEDDGTVKVASSDGNSIKAAINWIKS-IATDPEVGHIYDGTVVKVVDFGAFVNFFGSKD 649
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
GL+H+S+L+ V++ SDVV G ++ ++ +G D RG ++LS++ V D++G
Sbjct: 650 GLVHISQLAKGRVAKTSDVVKEGDKVKVKLLGFDDRGKVRLSMRLVDQETGEDLEG 705
>gi|423122289|ref|ZP_17109973.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5246]
gi|376392615|gb|EHT05278.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5246]
Length = 711
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQIDVIKAETIATLIAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K +R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TTEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|404252243|ref|ZP_10956211.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. PAMC
26621]
Length = 808
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 289/704 (41%), Positives = 447/704 (63%), Gaps = 17/704 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQ 120
+ G + +TLETG++AR A+GAV+ + ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 10 QWGGKTLTLETGRVARQADGAVMATLGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEKY 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G IP + +RE E+E L R+IDRPIRPLFP GFY+E+ V+ VLS DG+ +PD
Sbjct: 68 SAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENEPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A A SAAL +S +P+ GPIG R+G I G++I+NPT++++ +L+LV A T + +
Sbjct: 128 MLAMVAASAALTISGVPFMGPIGAARVGYIDGEYILNPTVEQIKAGELDLVVAATGDAVM 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E+SE+ + ++ AH + I LAE+A K E + +K+
Sbjct: 188 MVESEAKELSEEIMLGAVQFAHKACREVCNLVIDLAEQAAKDPWEMPVQSDLTAAKDKLR 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
L A I A + SK R L ++ ++A + ++ + K V + ++
Sbjct: 248 KLVGADIAAAYKVTDKSK--RSTMLYEVRAKAREAFADAAPQDQMAA-GKLVKKLEGEIV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R I+ +G R+DGR ++RPI LP HGS+LF+RG+TQ +CT TLG Q +
Sbjct: 305 RGAILKDGTRIDGRTTTQIRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKDAEQMI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G + FMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP +++FPYT+
Sbjct: 365 DGLTGLSYENFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKDEFPYTI 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E KD+ +L
Sbjct: 425 RVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG-------KDFAVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I+ L A +GR IL M
Sbjct: 478 SDILGDEDHLGDMDFKVAGTEAGITTMQMDIKIAGITDEIMRVALAQAKEGRAHILGEMN 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ + + RT+ ++PR+ TL+ D +R +IG G + R+I +TG ++ + D G + +
Sbjct: 538 KALDSTRTELSAHAPRIETLQIDKAKIREVIGTGGKVIREIVAQTGAKVDIDDEGLIKIS 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + +E ++ + I+ E EVG +Y G V ++ ++GAFV F GG+ GL+HVSE+ +E
Sbjct: 598 SSDTAQIEAAIKWIKGIV-EEAEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
V +VSDV+S GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 657 RVEKVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAEIE 700
>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 706
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/703 (42%), Positives = 443/703 (63%), Gaps = 14/703 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ K+ F G+ +T+ETG+IAR A GAV++ +D+T VL +V +K +DF PLT
Sbjct: 1 MFNIVKKTFAYGAHQVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP + +REG P E+E L R+IDRP+RPLFP GFYHEVQV+A+V+S
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSL 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + DPDI A SAA+ +S IP+ GPIG R+G + GQ++VNPT +L S L+LV A
Sbjct: 121 NPEIDPDIAALIGASAAMTISGIPFDGPIGAARVGYVDGQYVVNPTATQLKSSLLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A+E+SE+ + + H + ++ LA++AGK + ++ + +E
Sbjct: 181 GTQAAVLMVESEAKELSEEVMLGAVVFGHQQMQVVIDAINELADEAGKPEWDWTPAARNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
K++ L EA ++ + SK R + L ++ + L + D + V
Sbjct: 241 AVHGKLNQLVEAELQEAYR--ITSKQLRSQRLKEVTAYAVETLTADDDAPDANAVRNMVS 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V R++R RI+A R+DGR VRPI SG LP HGSSLF+RG+TQ + TLG
Sbjct: 299 AVEARIVRGRILAGEPRIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPP 472
+ Q +++L G +RFMLHY+FPP+ E G RVG RREVGHG LA++ALLAVLP
Sbjct: 359 GRDEQIIDALSGEYRERFMLHYNFPPYATGECG-RVGTPKRREVGHGRLAKRALLAVLPA 417
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
DF YT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ HVAG+++GL+ E +
Sbjct: 418 PEDFSYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVA- 476
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + R
Sbjct: 477 ------VLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAGEAR 530
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M+ +S R + +PRL T+K + + +R +IG GA+ R I EETG I +
Sbjct: 531 LHILKQMQGSMSGHREEVSTYAPRLYTMKINPEKIRDVIGKGGAVIRAITEETGTTIDIK 590
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+T+ + + +++ I ++EVG +Y G V + ++GA V G+ GLL
Sbjct: 591 DDGTITIASVSGEAASAARARIESITA-DVEVGKVYDGTVLKLLDFGAIVSILPGRDGLL 649
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+S++++E V+ V+D + GQ++ ++ + D +G ++LS+KA+
Sbjct: 650 HISQIANERVNAVADYLKDGQKVRVKVLEADEKGRVRLSMKAL 692
>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
Length = 689
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/698 (43%), Positives = 439/698 (62%), Gaps = 14/698 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+E F + ++ R +T+ETG++A+ A GAV++G +T+VL T T SK DF PLTVD
Sbjct: 1 MEQF--QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVD 58
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK +A G +P +++RE P E +L R+IDRPIRPLF G +EV V+A+V+S D
Sbjct: 59 YEEKMYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQ 118
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
DP I SAAL +SD+PW GPI +R+GRI G+F+VNPT +L +DLN+V A T
Sbjct: 119 DCDPAICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGT 178
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
++ LM++ A E+ E + + AH E K + Q + K GK+K+ ++ + +
Sbjct: 179 KDAILMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPVEI 238
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
+ V ++A K +R +++ DV EE ++L + KA D +
Sbjct: 239 SDAVRAYGHDKLDAAVR--CADKQQRDAQENEVRADVLAHF-EEIYPDNLADVNKAFDAM 295
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K ++R I E +R DGRQLDEVRPI C +G LP HGS LF+RG TQVL +T+ +
Sbjct: 296 TKEIVRHMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLS 355
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
E Q ++ L KR++ HY+FP F + E G RRE+GHG LAE+AL+ V+P E D
Sbjct: 356 EKQTIDGLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEED 415
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+SMA+VCG +++LMDAG+P++ VAG+++GLV++ GE
Sbjct: 416 FPYALRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQ-----GE-- 468
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +G+ +I+ E LE AHKGR+ I
Sbjct: 469 HYTILTDIQGMEDALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHI 528
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
+ M I+ PR Q + +PR+ T+K D D +R +IG G + R I EETG +I + DG
Sbjct: 529 MGIMLDTIAEPRQQMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDG 588
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + + K E + + +E+EVG +Y G VT + +GAFVE G++GL+H+S
Sbjct: 589 TVFIASVEQEGAAKAQEIITNLT-KEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHIS 647
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+L+ E V V DVVSVG ++ ++ I D +G + LS K
Sbjct: 648 KLAKERVENVEDVVSVGDEIMVKVIEIDKQGRVNLSRK 685
>gi|425065982|ref|ZP_18469102.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida P1059]
gi|404382522|gb|EJZ78982.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida P1059]
Length = 751
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 442/704 (62%), Gaps = 15/704 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 43 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 102
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GFY+E+Q++A+V+S + + P
Sbjct: 103 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICP 162
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 163 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAV 222
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + ++ + +AGK + ++ + +EKV
Sbjct: 223 LMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFSAEAGKPRWDWVAPEPNTALIEKV 282
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD---TVR 356
+AEA + + K R E +D I DV + E E K VD +
Sbjct: 283 KAIAEARLGEAYR--ITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTALE 340
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +
Sbjct: 341 SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 400
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +F
Sbjct: 401 AQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEF 460
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 461 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK------- 513
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A RL IL
Sbjct: 514 FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHIL 573
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT
Sbjct: 574 GVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGT 633
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + + ++V+ +++ I E+E G +YKG VT + ++GAFV G ++GL+H+S+
Sbjct: 634 VKIAAVDGNSAKEVMARIEDITA-EVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQ 692
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
++ E V +VSD ++VGQ+++++ + D +G I+L++K V+P+ E
Sbjct: 693 IAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 736
>gi|427410970|ref|ZP_18901172.1| polyribonucleotide nucleotidyltransferase [Sphingobium yanoikuyae
ATCC 51230]
gi|425710620|gb|EKU73641.1| polyribonucleotide nucleotidyltransferase [Sphingobium yanoikuyae
ATCC 51230]
Length = 771
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/701 (42%), Positives = 437/701 (62%), Gaps = 19/701 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD---FLPLTVDY 116
K E+ + +TLETG+IAR A+ AV+ ET VL VT++K SV+D F PLTV Y
Sbjct: 6 KVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKDGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+A V+S DG+
Sbjct: 64 QEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVMSFDGE 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G++ +NP++DE+ +L+LV A T
Sbjct: 124 SEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATS 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A+E+SE + + AH + K ++ I+LAEKA K E
Sbjct: 184 NAVMMVESEAKELSEDVMLGAVLFAHEASKKVVDAIIQLAEKAAKDPWEMAKGDDLGALK 243
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVD 353
K+ +L I A + TD S R AL++ K E+ D +++ K
Sbjct: 244 TKLKDLIGGDIAAAYKLTDKS----ARSNALNEARAKAKAMFTEDGLDAQTVMAGIKLTK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R I+ +G R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 300 KLEAEIVRGAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +
Sbjct: 360 KDAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTK 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 420 DEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG------ 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR
Sbjct: 474 -SDFAVISDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFETALRQAKEGRA 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 533 HILGEMNKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDD 592
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
+ ++ + + + +K I E EVG IY G V ++ ++GAFV F GG+ GL+HV
Sbjct: 593 EGIIKISSSDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHV 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 653 SEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|365886810|ref|ZP_09425710.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3809]
gi|365337639|emb|CCD98241.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3809]
Length = 719
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/700 (43%), Positives = 439/700 (62%), Gaps = 21/700 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K D V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPRDGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF + +E QV+ + LS D + DP
Sbjct: 67 AYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A SAAL LS +P+ GPIG R+G ++I+NPT+DE++ + L+LV A T +
Sbjct: 127 DILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E + + H + I LAEKA K+ ++ +++I +EK
Sbjct: 187 LMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRD--VAIIDNSAIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK- 357
+ +AE + + P K ER A+ + + V E E + L + D ++
Sbjct: 245 MLGIAEQDLRKAYAIPV--KQERYAAVGAVKEKVMAHFFPEGAEPKYEKL-RVADVFKEL 301
Query: 358 --RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR + VR I CE G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGRRIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT RV SEV S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 422 FPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG-------S 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A +GR+ I
Sbjct: 475 RYAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++A R + +PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMSKALTAARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGTRDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+L+ + V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 654 QLADKRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
Length = 709
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVTIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
RW1]
gi|187611293|sp|A5VCY9.1|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
RW1]
Length = 774
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/706 (41%), Positives = 446/706 (63%), Gaps = 21/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ +T K E + G + +TLETG++AR A+GAV+ + ET VL VT+++ SV+ DF P
Sbjct: 1 MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAAR--SVKEGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV YQEK F+ G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+A VL
Sbjct: 59 LTVHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S DG+ +PDI+A A SAAL +S +P+ GPIG R+G G++++NPT +++ DL+LV
Sbjct: 119 SYDGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T + +M++ +A+E+SE+ + + AH + ++ I+LAEK+ K E
Sbjct: 179 VAATHDAVMMVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQAD 238
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
K+ L I A + +K R AL++ K+A + ++ + + K
Sbjct: 239 LSAAKTKLKKLVGKDITAAYK--LTNKSARSSALNEARAKAKEAFADATPQDQMAAI-KL 295
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V + ++R I+ +G R+DGR VRPI E+ LP HGS+LF+RG+TQ + T TL
Sbjct: 296 VKKLEAEIVRTAILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTL 355
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL AVLP
Sbjct: 356 GTKESEQMIDGLNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLP 415
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ +FPYT+R+ S++ S+GS+SMATVCGGS+A+MDAG+P++ V+G+++GL+ E
Sbjct: 416 TKEEFPYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEG---- 471
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
KD+ +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +G
Sbjct: 472 ---KDFAVISDILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEG 528
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + + RT+ ++PR+ T+ D +R +IG G + R+I TG ++ +
Sbjct: 529 RAHILGEMAKALDHTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDI 588
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
DGT+ + + + + +E ++IIG E EVG IY G V ++ ++GAFV F GG+
Sbjct: 589 DDDGTVKISSSDTAQIEAAR---NWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKD 645
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+HVSE+ +E V +V+D +S GQ++ ++ + D RG ++LS++ V
Sbjct: 646 GLVHVSEIKNERVEKVADALSEGQEVKVKVLEIDNRGKVRLSMRVV 691
>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
Length = 699
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/706 (43%), Positives = 441/706 (62%), Gaps = 29/706 (4%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
++TF + ++ R + +ETGK+A+ ANGAV++ +T VL T T+S + DF PLTV
Sbjct: 1 MQTF--QMQLAGRALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTV 58
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E +L GR+IDRPIRPLF GF ++V V+A+VLS D
Sbjct: 59 DYEERLYSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVD 118
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PDI A S AL +SDIP+ GPIG +R+GR+ GQFI+NPT+++ SDLNLV A
Sbjct: 119 QDNPPDIPAMIGASCALSISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSDLNLVVAG 178
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T++ LM++ A E+ E+ + + H + + Q ++ + GK K+E L + +
Sbjct: 179 TKDAVLMVEAGANEVPEEAILDAITFGHDVIREIVAFQEKIVAEVGKPKREIPLYEVPPE 238
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK---- 350
V ++ T+P K R E + K ++ E E L + P
Sbjct: 239 IDAAVREYVTEKLKDAVTNPD--KLMREEQI--------KQVKAEATEHFLVLYPDNAKD 288
Query: 351 ---AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ V K ++RK I + VR DGR+LDE+RPI CE G L HGS LF+RG TQVL
Sbjct: 289 IAYVMQKVLKEIVRKMITIDKVRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLT 348
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLGA + Q L+ L +KR+M HY+FP F + E G RRE+GHG LAE+ALL
Sbjct: 349 VTTLGAIGDEQILDGLGVEESKRYMHHYNFPAFSVGETRPARGPGRREIGHGALAERALL 408
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
V+PPE +FPYT+R+ SEV+ S+GSTSM +VCG +++LMDAG+P++ V+GV++GLV E
Sbjct: 409 PVIPPETEFPYTIRLVSEVLESNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLVKEG 468
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +GI +I+ + LE
Sbjct: 469 D-------HYTILTDIQGIEDALGDMDFKVAGTAKGVTAIQMDIKISGITKEILADALEQ 521
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GRL ILD M I PR + +PR+ T++ D D +R +IGP G +KI +ETG
Sbjct: 522 ARRGRLFILDKMLEVIKEPRPELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGV 581
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
I + DG + + A + +K + ++ ++ R++EVGG+Y G VT + +GAFVE G
Sbjct: 582 TIDIEDDGKVFIAAVDVEAGKKAVRIIENLV-RDVEVGGVYMGKVTRLMNFGAFVEILPG 640
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
++GL+H+S+L+ E V++V DVV VG ++ ++ D +G I LS K
Sbjct: 641 KEGLVHISQLARERVNKVEDVVKVGDEILVKVTEIDRQGRINLSRK 686
>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
RB2256]
gi|123380103|sp|Q1GVQ8.1|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
Length = 771
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/716 (41%), Positives = 449/716 (62%), Gaps = 21/716 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD---FLP 111
+ + K E G +TLETGK+AR A+GAV+ + ET VL VT++K SV+D F P
Sbjct: 1 MFDVKKVSIEWGGETLTLETGKVARQADGAVIATLGETVVLCAVTAAK--SVKDGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV YQEK A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ +A VL
Sbjct: 59 LTVHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S DG +PDI+A A SAAL +S +P+ GPIG R+G + G++I+NPT ++++ DL+LV
Sbjct: 119 SYDGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T + +M++ +A E+SE+ + + AH + ++ I+LAE+A K+ E S
Sbjct: 179 VAATHDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIIKLAEQAAKEPWEIASSDD 238
Query: 292 SEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKA-LEEECDEESLQVL 348
+K+ L I A + TD S R AL++ K++ + + D +++
Sbjct: 239 DAALKDKLRKLIGKDIAAAYKLTDKS----ARSNALNEARAKAKESFIADGLDPQAVMAG 294
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
K V + ++R I+ EG R+DGR ++RPI E+ LP HGS+LF+RG+TQ + T
Sbjct: 295 IKIVKKLEAEIVRTAILKEGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIAT 354
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL
Sbjct: 355 CTLGTKDAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHP 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLP +++FPYT+R+ S++ S+GS+SMA+VCGGS+A+MDAG+P++ V+G+++GL+ E
Sbjct: 415 VLPSKDEFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEG- 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
KDY IL+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A
Sbjct: 474 ------KDYAILSDILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALAQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
+GR IL M + + RT+ ++PR+ T++ D +R +IG G + R+I TG +
Sbjct: 528 KEGRAHILGEMNKALGEVRTELSAHAPRIETMQIDKAKIRDVIGTGGKVIREIVATTGAK 587
Query: 649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
+ + D G + + + + +E + + I+ E EVG IY G V ++ ++GAFV F GG+
Sbjct: 588 VDIDDEGLIKISSSDLDQIEAARKWIAGIV-EEAEVGKIYDGKVVNLVDFGAFVNFMGGK 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
GL+HVSE+ +E V +V+DV+S GQ + ++ + D RG ++LS++ V A+++
Sbjct: 647 DGLVHVSEIRNERVEKVADVLSEGQDVKVKVLEIDPRGKVRLSMRVVDQETGAELE 702
>gi|417839272|ref|ZP_12485465.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19107]
gi|341953842|gb|EGT80338.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19107]
Length = 709
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D +R + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTIRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMARIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittEE]
gi|187610272|sp|A5UAQ6.1|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittEE]
Length = 709
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLASVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
Length = 706
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/696 (42%), Positives = 444/696 (63%), Gaps = 18/696 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K +++ +++E +V
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEVLYARVK 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LA A + + K ER +D I +V +AL +E D +Q + + +V K
Sbjct: 248 ELASARLGDAYR--ITEKQERYTQVDAIKANVIEALLAQDETLDTSEIQDI---LGSVEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 303 DVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L+G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P ++FP
Sbjct: 363 QNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + + ++
Sbjct: 423 YTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEE-------NF 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ E L A RL IL
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILG 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
ME+ IS PR +PR+ T+K ++D ++ +IG G++ R + EETG I + DGT+
Sbjct: 536 VMEQAISTPRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTI 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S++
Sbjct: 596 KIAATDGEKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 655 ADKRVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIK 690
>gi|410664019|ref|YP_006916390.1| polynucleotide phosphorylase/polyadenylase [Simiduia agarivorans
SA1 = DSM 21679]
gi|409026376|gb|AFU98660.1| polynucleotide phosphorylase/polyadenylase [Simiduia agarivorans
SA1 = DSM 21679]
Length = 711
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 303/696 (43%), Positives = 441/696 (63%), Gaps = 19/696 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ GS +TLETG++AR A+GAV+ + ET VL TV +K +DF PL+V YQEK +
Sbjct: 8 FQYGSDTVTLETGRVARQASGAVIATIGETSVLCTVVGAKEAKEGQDFFPLSVHYQEKAY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +V+S++ DPDI
Sbjct: 68 AAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVVSAEKNVDPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREKTL 240
A TSAAL +S IP+ GPIG R+G +I+NPT L S+L++V A T++ L
Sbjct: 128 CAMIGTSAALAISGIPFAGPIGAARVGYTQADGYILNPTYSALKTSELDMVVAGTKDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A E+ E + + AH E ++ LA AGK ++ S +E T K +
Sbjct: 188 MVESEANELPEDIMLGAVLYAHQEMQAVVQAVSELARDAGKPVWDW--SAPAENTELKAA 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKAVDTVRK 357
LA+ +++ +Y ++ + D++G+ +A+EE +E+ S + +A + K
Sbjct: 246 -LAKGFEDSIGV--AYRITDKAKRYDRLGELRSQAIEELVNEDAGVSKDDVREAFAKLEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R R++A R+DGR VR I E G LP HGS+LF+RG+TQ L TLG+ +A
Sbjct: 303 NIVRSRVVAGEPRIDGRDAKTVRAIEVEVGVLPKAHGSALFTRGETQALVVATLGSARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q +++L G FMLHY+FPP+ + E G+ RRE+GHG LA + + A LP +DFP
Sbjct: 363 QIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAASLPNMDDFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
Y++RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + +
Sbjct: 423 YSLRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEDN-------GF 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE A RL IL
Sbjct: 476 AVLTDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMEIALEQALHARLHILA 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M + ISAPR + + N+PR +K D D +R +IG GA+ R + EETG I + DGT+
Sbjct: 536 EMNKVISAPRGEINDNAPRFEKIKVDPDKIRDIIGKGGAVIRAMTEETGASIDIEDDGTV 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
T+ + V+ VL+++ I E EVG IY+G V + ++GAFV F G+ GL+H+S++
Sbjct: 596 TIFGQTGEVIRDVLDRIGAITA-EAEVGEIYEGTVVRIVDFGAFVNFLPGKDGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ E V+ V+D + GQ + ++C+ D RG IKLS+K
Sbjct: 655 AEERVNDVNDYLKEGQVVRVKCLDVDQRGRIKLSIK 690
>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
R3021]
gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
22.4-21]
gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
Length = 709
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|444345965|ref|ZP_21153963.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443542204|gb|ELT52563.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 752
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/701 (41%), Positives = 440/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 49 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 108
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 109 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 168
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E S L+LV A T +
Sbjct: 169 DLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAV 228
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L +AGK + ++ + + KV
Sbjct: 229 LMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTALINKV 288
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV + E +E S + + ++
Sbjct: 289 KALAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALESQI 346
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 347 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 406
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 407 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 466
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 467 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDK-------FVV 519
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 520 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 579
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 580 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 639
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+EVG YKG V + ++GAFV G ++GL+H+S+++
Sbjct: 640 AAVDKNAVQDVMARIEDITA-EVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAE 698
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ++ ++ + D +G I+L++K + P+ +
Sbjct: 699 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQD 739
>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase [Aromatoleum aromaticum EbN1]
gi|81356612|sp|Q5NZR7.1|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
aromaticum EbN1]
Length = 699
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/703 (42%), Positives = 447/703 (63%), Gaps = 13/703 (1%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
K+ F G+ +TLETG+IAR A GAV++ MD+T VL+TV ++K + +DF PLTVDY
Sbjct: 5 IKKTFAYGAHTVTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYV 64
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQV+ +VLS + +
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEV 124
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPDI A SAAL +S +P+ GPIG R+G GQ+++NPT+++L S+LNLV A T
Sbjct: 125 DPDIPAMIGASAALAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELNLVVAGTEA 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +ARE+SE+ + + H + + L E AGK + +++ +E +
Sbjct: 185 AVLMVESEARELSEEVMLGAVVFGHQQMQVAIRAINELVEVAGKPEWDWQPPAKNEPLIA 244
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD-EESLQVLPKAVDTVR 356
++ LA AH+E F SK R + +++I + + + + + L +
Sbjct: 245 RIKELAGAHLEEAFR--ITSKQARTQRINEIRKQTFGVVADGVEVPPTGNELKDIFHDLE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
V+R RI+A R+DGR VRPI G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AGVVRSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRD 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++++ G + F+LHY+FPPF E G+ RREVGHG LA++AL+A LP + DF
Sbjct: 363 EQIIDAIAGEYRESFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
YTVRV SE+ S+GS+SMA+VCG S+A+MDAG+P++ HVAG+++GL+ E +
Sbjct: 423 SYTVRVVSEITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGN-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A +GR+ IL
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAGEGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGT 655
M++ +++ R + +PR+ T+K + + +R +IG GA+ R ++EETG I + DG+
Sbjct: 536 ALMKQALASHRGEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRGLQEETGTVIELQDDGS 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+T+ + + + EK++ I E+EVG +Y G V + ++GA V G+ GLLHVS+
Sbjct: 596 VTISSVSAEGAQLAKEKIEAITA-EVEVGKVYNGTVVRLLDFGAIVNIMPGRDGLLHVSQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+++E V+ V+D V GQ + ++ + D RG I+LS+KA+ +P
Sbjct: 655 IANERVNNVADYVKEGQAVRVKVLETDERGKIRLSMKALLDQP 697
>gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
vulgare Y25]
gi|385234825|ref|YP_005796167.1| polyribonucleotide nucleotidyltransferase protein
[Ketogulonicigenium vulgare WSH-001]
gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
vulgare Y25]
gi|343463736|gb|AEM42171.1| Polyribonucleotide nucleotidyltransferase protein
[Ketogulonicigenium vulgare WSH-001]
Length = 713
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 303/709 (42%), Positives = 446/709 (62%), Gaps = 23/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ K+ + G +TLETGKIAR A+G+V+ + ET V++ VT +K +DF PLT
Sbjct: 1 MFNQIKKSIQWGDETLTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V YQEK +A G IP + +RE P ERE L+ R+IDRP RPLF GF HEV VMA+VLS
Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPTERETLISRLIDRPCRPLFVEGFKHEVLVMATVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDEL------SLSD 227
D DPDI+A A SAAL +S +P+ GPIG R+G G + +NP +DEL S
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIRNKSEQR 180
Query: 228 LNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK 287
L+LV A T++ +M++ +A E+SE ++ + AH + ++ I LAE A K+ +++
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAAKEPFDFQ 240
Query: 288 LSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQ 346
+ S L V+ L + A F +K +R A+D +K L EE+ + SL
Sbjct: 241 PADTS-ALLAAVTALGGEDMRAAFA--IRTKQDRVAAIDAAVAKIKAGLTEEQLADSSLG 297
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ K +++ V+R I+ G R+DGR LDEVRPI E+G LP HGS+LF+RG+TQ L
Sbjct: 298 AVIKQLES---DVLRSDIVKHGRRIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGL 354
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q +++L G F+LHY+FPP+ + EVG+ RRE+GHG LA +AL
Sbjct: 355 VVTTLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRAL 414
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
AVLP DFPYT+RV SE+ S+GS+SMA+VCGGS++++DAG+PL+ VAGV++GLV E
Sbjct: 415 QAVLPANTDFPYTIRVVSEITESNGSSSMASVCGGSLSMLDAGVPLKAPVAGVAMGLVLE 474
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D S + +LTDILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L
Sbjct: 475 KDGS------WAVLTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMRKALA 528
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GRL IL M + ++ ++PR+ T++ D +R +IG G + R+I E +G
Sbjct: 529 QARTGRLHILGEMAKSLTTANAF-SAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSG 587
Query: 647 GRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
++ ++ DGT+ + + N ++K + + I+ E E+ GIYKG V + ++GAFV F G
Sbjct: 588 AKVDINDDGTIKIASSNGEAIKKAYDMIWSIVA-EPEINGIYKGTVVKLVDFGAFVNFFG 646
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+HVS++ + ++ SDV+ GQ++ ++ +G D RG ++LS+K V
Sbjct: 647 KRDGLVHVSQIENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKIV 695
>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
Length = 706
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/693 (42%), Positives = 439/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+ +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA A + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAAARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 RVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIK 690
>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
Length = 706
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/696 (42%), Positives = 443/696 (63%), Gaps = 18/696 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T + L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTADAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+ +SE + + H + +E L + GK K ++ ++E +V+
Sbjct: 188 MVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LAEA + + K ER +D I DV +AL +E D +Q + + V K
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDESLDASEIQDI---LGDVEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FP
Sbjct: 363 QNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE ++
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--NF 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILG 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
ME+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+
Sbjct: 536 VMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTI 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S++
Sbjct: 596 KIAATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 655 ADKRVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIK 690
>gi|386833714|ref|YP_006239028.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. multocida str. 3480]
gi|385200414|gb|AFI45269.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. multocida str. 3480]
Length = 714
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 441/704 (62%), Gaps = 15/704 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GFY+E+Q++A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + ++ +AGK + ++ + +EKV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD---TVR 356
+AEA + + K R E +D I DV + E E K VD +
Sbjct: 246 KAIAEARLGEAYR--ITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKVVDIFTALE 303
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +
Sbjct: 304 SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 363
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +F
Sbjct: 364 AQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEF 423
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 424 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK------- 476
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A RL IL
Sbjct: 477 FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHIL 536
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT
Sbjct: 537 GVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGT 596
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + + ++V+ +++ I E+E G +YKG VT + ++GAFV G ++GL+H+S+
Sbjct: 597 VKIAAVDGNSAKEVMARIEDITA-EVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQ 655
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
++ E V +VSD ++VGQ+++++ + D +G I+L++K V+P+ E
Sbjct: 656 IAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 699
>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
568]
gi|187611288|sp|A8G911.1|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
568]
Length = 705
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/708 (41%), Positives = 444/708 (62%), Gaps = 18/708 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE + + K ER +D I V + L + + + + + +V K V+
Sbjct: 248 ELAEGRLGDAYH--ITEKQERYAQVDAIKSSVVETLLAQDETLDVSEIQDILGSVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNL 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFPYTV
Sbjct: 366 DELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR + +PR+ T++ + D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QAISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGEKAKFAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK------AVSPRPEAD 761
V +V+D + +GQ++ ++ + D +G ++LS+K A SP PEA+
Sbjct: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSPAPEAE 705
>gi|206579040|ref|YP_002236426.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
342]
gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
gi|226702656|sp|B5XSX9.1|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
342]
gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
Length = 711
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIDEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase [Geobacillus thermodenitrificans
NG80-2]
gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
gi|187610268|sp|A4IME3.1|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
thermodenitrificans NG80-2]
gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
Length = 722
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/694 (42%), Positives = 444/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R + +ETG++A+ ANGA ++ +T VLST T+S+ DF PLTV+Y+E+ +A
Sbjct: 10 IDVAGRPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKDVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D P++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEVA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI + +GRI GQF++NPT++++ SD++L+ A T++ M+
Sbjct: 130 ALIGSSVALTISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDMHLIVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E + + Q +A + GK+K E L + ++ L
Sbjct: 190 EAGADEVPEEVMLEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPELEAEIRQL 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AEA I+ P K R A++ + V E EE DEE L+ + + + + K +R
Sbjct: 250 AEADIKKAVQVP--EKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FPPF + E G G RRE+GHG L E+AL V+P E +FPYT+R
Sbjct: 368 GLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNED-------HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ DI+ E L+ A KGRL+ILDHM +
Sbjct: 481 DIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTRDILEEALQQARKGRLEILDHMMQ 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+S PR + + +P++ + + D +R +IGP G KI +ETG +I + DGT+ + +
Sbjct: 541 TLSEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 VDEEANQKAKQIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ +V D+VS+G ++ ++ D +G + LS KAV
Sbjct: 660 IGKVEDIVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|416052880|ref|ZP_11578515.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991672|gb|EGY33135.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 754
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/716 (41%), Positives = 444/716 (62%), Gaps = 21/716 (2%)
Query: 53 TKVLETFKEE---------FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG 103
T +L FK+E F+ G +TLETG IAR A AV+ MD+T V TV + K
Sbjct: 32 TSLLFIFKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKD 91
Query: 104 -DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYH 162
+DF PLTV+YQE+ +A G IP + +REG P E E L+ R+IDRPIRPLFP GF++
Sbjct: 92 VKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFN 151
Query: 163 EVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDE 222
E+QV+A+V+S + + PD++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E
Sbjct: 152 EIQVVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNE 211
Query: 223 LSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ 282
S L+LV A T + LM++ +A ++E+ + A + H + +E L +AGK
Sbjct: 212 QKQSRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKP 271
Query: 283 KKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+ ++ + + KV LAEA + + K R +D I DV + E +E
Sbjct: 272 RWDWVAPEPNTALINKVKALAEARLGDAYR--ITEKQSRYAQIDAIKADVIAQITAEDEE 329
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
S + + +++R RIIA R+DGR +D VR + +G LP HGS++F+RG+
Sbjct: 330 ISEGKIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGE 389
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L TLG +AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 390 TQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLA 449
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ + AV+P +FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 450 KRGVAAVMPTLVEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 509
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D + +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+
Sbjct: 510 LVKEED-------KFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQ 562
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A R+ IL ME+ I APR +PR+ T+K D ++ +IG GA+ R +
Sbjct: 563 IALNQAKSARMHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALT 622
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A +++ ++ V+ +++ I E+EVG IYKG V + ++GAFV
Sbjct: 623 EETGTSIDIDDDGTVKIAAVDKNAVQDVMARIEDITA-EVEVGAIYKGKVIRLADFGAFV 681
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
G ++GL+H+S+++ E V +VSD + VGQ++ ++ + D +G I+L++K + P+
Sbjct: 682 AIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPK 737
>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
Eb661]
gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
Eb661]
Length = 714
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/716 (41%), Positives = 451/716 (62%), Gaps = 21/716 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L ++F+ G +T+ETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVKKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQ++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS +P+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVHPDIVALIGASAALSLSGLPFNGPIGAARVGYLNDQYVLNPTTDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE + + H + ++ L +AGK + ++K ++E
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIDQINALVAEAGKPRWDWKPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE---CDEESLQVLPK 350
+++ LAE+ + + K ER + I + AL E D+ + L
Sbjct: 241 SLQTRIAALAESRLSEAYQ--ITEKQERYAQVGVIKSETTAALLAEDASLDDNEIGDLLH 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A++ K V+R RI++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T T
Sbjct: 299 ALE---KNVVRSRILSGAPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ L+ L+G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+
Sbjct: 356 LGTARDAQNLDELMGEKTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVM 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 416 PKADAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE---- 471
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 472 -GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKG 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG I
Sbjct: 529 ARLHILGVMEQAISTPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIE 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++G
Sbjct: 589 IEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR---PEADV 762
L+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K + + PEA V
Sbjct: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQAAEPEAAV 703
>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
BTAi1]
gi|187470940|sp|A5E870.1|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
BTAi1]
Length = 720
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/701 (42%), Positives = 440/701 (62%), Gaps = 23/701 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF + +E QV+ + LS D + D
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G ++I+NPT+DE++ + L+LV A T +
Sbjct: 126 PDILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQLDLVVAGTSDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E + + H + I LAEKA K+ ++ +++I +EK
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRD--VAIIDNSAIEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
+ +AE + + P K ER A+ + + V E E + L + D ++
Sbjct: 244 EMLGIAEQDLRKAYAIPV--KQERYAAVAAVKEKVMAYFFPEGQEPKYEKL-RVADVFKE 300
Query: 358 ---RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+++R I+ G R+DGR + VR I CE G LP HGS+LF+RG+TQ L TLG
Sbjct: 301 LEAKIVRWNILDTGRRIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP +
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT RV SEV S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG------- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A +GR+
Sbjct: 474 SRYAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIH 533
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SD 653
IL M + ++A R + +PR+ T K D +R +IG G + R+I E+TG ++++ D
Sbjct: 534 ILGEMSKALTAARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDD 593
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ V + + M+ ++ + I + E+G IY G V V E+GAFV F G + GL+H+
Sbjct: 594 GTVKVASSDGEAMKAAIKWIKS-IASDPEIGQIYDGTVVKVMEFGAFVNFFGTRDGLVHI 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
S+L+ + V + +DVV G ++ ++ +G D RG +LS+KAV
Sbjct: 653 SQLADKRVQKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter
autotrophicus Py2]
gi|226704833|sp|A7IC03.1|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter
autotrophicus Py2]
Length = 730
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/706 (42%), Positives = 455/706 (64%), Gaps = 17/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + G R +TLETGK+AR A+G+V+ +TKVL+TV S++ +DF PLT
Sbjct: 1 MFDIHREELDWGGRTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ + QV+ +VL+
Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD++A A SAAL LS +P+ GP+G R+G I ++++NPT+DE+ S L LV A
Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESALELVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E+ + + H +E I+LAEKA K+ + ++ + +SE
Sbjct: 181 GTGDAVLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKEPRNFQPADVSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE----ESLQVLP 349
KV +AEA + A + K +R A+ VKK EE + + QV+
Sbjct: 241 -VESKVREIAEADLRAAYK--IKQKQDRYAAVGAAKSKVKKYYEELALDGTKVPTAQVVS 297
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ + +++R I+ +G+R+DGR + VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 298 DVLKALEAKIVRWNILDDGIRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVA 357
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+ +
Sbjct: 358 TLGTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPM 417
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP +++FPYT+RV SE++ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E
Sbjct: 418 LPAKHEFPYTLRVVSEILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILE--- 474
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A
Sbjct: 475 --GE--KFAVLSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALTQAK 530
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR+ IL M + ++ R + ++PR+ +K D +R +IG G + R+I E+TG +I
Sbjct: 531 DGRVHILGEMAKALTTARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKI 590
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + ++ + + I E EVG IY+G V V ++GAFV F G +
Sbjct: 591 NIEDDGTIKIASASGDAIKAAINWIKS-IASEPEVGQIYEGTVVKVVDFGAFVNFFGSKD 649
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+HVS++++E V++ SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 650 GLVHVSQMANERVAKPSDVVKEGDKVKVKLMGFDERGKTRLSMKVV 695
>gi|425063811|ref|ZP_18466936.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida X73]
gi|404382365|gb|EJZ78826.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida X73]
Length = 751
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 441/704 (62%), Gaps = 15/704 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 43 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 102
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GFY+E+Q++A+V+S + + P
Sbjct: 103 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICP 162
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 163 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAV 222
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + ++ +AGK + ++ + +EKV
Sbjct: 223 LMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKV 282
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD---TVR 356
+AEA + + K R E +D I DV + E E K VD +
Sbjct: 283 KAIAEARLGEAYR--ITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTALE 340
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +
Sbjct: 341 SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 400
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +F
Sbjct: 401 AQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEF 460
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 461 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK------- 513
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A RL IL
Sbjct: 514 FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHIL 573
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT
Sbjct: 574 GVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGT 633
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + + ++V+ +++ I E+E G +YKG VT + ++GAFV G ++GL+H+S+
Sbjct: 634 VKIAAVDGNSAKEVMARIEDITA-EVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQ 692
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
++ E V +VSD ++VGQ+++++ + D +G I+L++K V+P+ E
Sbjct: 693 IAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 736
>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
Rd KW20]
gi|1172546|sp|P44584.1|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
Length = 709
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEXSEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|378696376|ref|YP_005178334.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
Length = 709
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 712
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 446/704 (63%), Gaps = 18/704 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQ 120
E+G R + +TGK+A+ A+GAV++ +T VL VT+ D R DF PL V+Y+E+
Sbjct: 9 EVGGRPLRFQTGKLAKQADGAVIVSQGDTMVL--VTAVMSDEPREGIDFFPLLVEYRERA 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP +++REG P + E+L R+IDR IRP+FP GF ++VQV+A V+S+D + DP
Sbjct: 67 YAAGKIPGGFVKREGKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQENDPA 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A N SAAL +S IP+ P+G +R+ R+ G+ +VNP+ ++ +D+NLV + T + +
Sbjct: 127 VLAINGASAALHISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNADINLVVSGTEDAVV 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A+E+ E+++ + LAH E K + Q L + AGK+K E+ + E+T K+
Sbjct: 187 MVEGGAKEVPEEEILDAIELAHEEIKKSIRAQQELRDLAGKEKYEFIAPSLDEETKAKIE 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
IE V T K ER E L ++ + + +E EE + +A K+ +
Sbjct: 247 KWVFERIEPVIT--ISDKHERREKLRELRELM--FIELNIPEEEQSLAKEAFAEAEKKFV 302
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ ++ G+R+DGR+ +E+RPI E G LP +HGS+LF+RG TQ L T TLG P E Q +
Sbjct: 303 RQLVLERGIRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQLV 362
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
E L+ KRFMLHY+FPPFC+ EV G RRE+GHG LAE+AL V+P E++FPY +
Sbjct: 363 EGLMPEEQKRFMLHYNFPPFCVGEVAPLRGPGRREIGHGALAERALAPVIPEEDEFPYVI 422
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S+++ S+GS+SMATVCGGS++LMDAG+P++ VAG+++GL+ E D + +L
Sbjct: 423 RVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLILEGD-------KFVVL 475
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR GVTAIQ+D+K GI DI+ L+ A +GR+ ILD M+
Sbjct: 476 SDILGDEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISRDILMTALKQAREGRMYILDKMD 535
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
IS+PR +PR+ + K D + R LIGP G + I ++ G +I++ DGT+ V
Sbjct: 536 AVISSPREGISPYAPRIVSTKIDPEKTRDLIGPSGKTIKAIIDKAGVKITIKEDGTVLVS 595
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + ++ ++ + +++E+G Y G VT V+ YGAFVE G+ GL+H+S+L E
Sbjct: 596 APSEDAAAQAIKMIEDVT-KDLEIGNTYLGKVTRVENYGAFVELAPGKIGLIHISKLPPE 654
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+ + + V + ++ I D G KLS V+P E ++
Sbjct: 655 MRENIFESIKVSDIIPVKIIEFDQMGRPKLSRIDVTPEEERKLR 698
>gi|420130131|ref|ZP_14638635.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10224]
gi|394380396|gb|EJE58140.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10224]
Length = 711
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLF GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFLEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|359400098|ref|ZP_09193090.1| polyribonucleotide nucleotidyltransferase [Novosphingobium
pentaromativorans US6-1]
gi|357598524|gb|EHJ60250.1| polyribonucleotide nucleotidyltransferase [Novosphingobium
pentaromativorans US6-1]
Length = 761
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/701 (42%), Positives = 445/701 (63%), Gaps = 26/701 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 MEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +RE E+E L R+IDRP+RPLFP GFY+E+ +A VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINCIAQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD--LNLVYACTRE 237
D++A A SAAL +S +P+ GPIG R+G + GQ+ +NP E +L+D L+LV A T +
Sbjct: 127 DVVAMIAASAALTISGVPFMGPIGACRVGFVDGQYTLNPKQ-EAALADGRLDLVVAATGD 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E++E+++ + AH E K + I LAE+A K+ E LS +
Sbjct: 186 AVMMVESEAKELNEEEMLGAVMFAHDECKKVVNLIIDLAEQAAKEPWEIDLSDNTADIKA 245
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
K+ + + A + TD S R AL+ K+A + + ++ V K + V
Sbjct: 246 KLKEVVGKDVAAAYKLTDKSA----RSNALNAARAKAKEAFAD-AEPQTQMVAIKTMKKV 300
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R I+ +G R+DGR+LD+VRPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 301 EAEIVRGAILKDGQRIDGRKLDQVRPIESMVGFLPRTHGSALFTRGETQTICTTTLGTKD 360
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
Q ++ L G FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + D
Sbjct: 361 SEQMIDGLEGLSYSAFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKED 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV S+V S+GS+SMATVCGG +++MDAG+P++ V+G+++GL+ E D
Sbjct: 421 FPYTIRVLSDVTESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGD------- 473
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
++ +L+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I+ + LE A GR I
Sbjct: 474 EFAVLSDILGDEDHLGDMDFKVAGTENGITTMQMDIKIAGITKEIMGKALEQAKAGRAHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGT 655
L M + + + RT+ ++PR+ T++ D +R +IG G + R+I ET ++ + D
Sbjct: 534 LGEMTKALGSARTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETCAKVDIDDE- 592
Query: 656 LTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
V+ + S ++++ ++I+G E EVG IY G V ++ ++GAFV F GG+ GL+HV
Sbjct: 593 -GVIKISSSDLDQIEAAKNWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHV 651
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 652 SEMKNERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVV 692
>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
SD-21]
gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
SD-21]
Length = 763
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/701 (42%), Positives = 447/701 (63%), Gaps = 25/701 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 IEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +REG E+E L R+IDRP+RPLFP GFY+E+ V+ VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSFDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD---LNLVYACTR 236
DI+A A SAAL +S +P+ GPIG R+G G++ +NP++ +L + L+LV A T+
Sbjct: 127 DIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSLAN-ALDEEGRLDLVVAATQ 185
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ +A+E++E+++ + AH EA K + + LAE+A K E + +
Sbjct: 186 DAVMMVESEAKELTEEEMLGAVAFAHDEARKVVGAIVDLAEQAAKDPWEIERADDLSGMK 245
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+++ L I A + TD S ER + +D VK E+E D ++ K +
Sbjct: 246 DEIRGLIGDDIAAAYKITDKS----ERRDRIDAARDKVKAKYEDE-DGQTQSAANKIIKK 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ ++R I+ +G R+DGR+LD+VRPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 301 LESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTK 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
Q ++ L G FMLHY+FPP+ + EVG+ +RRE GHG LA +AL VLP
Sbjct: 361 DAEQMIDGLEGLSYNNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPDHE 420
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+R+ S++ S+GS+SMATVCGG +++MDAG+P++ V+G+++GL+ E GE
Sbjct: 421 DFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILE-----GE- 474
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
D+ +L+DILG EDHLGDMDFK+AG+ G+T +Q+DIK AGI +I+ + LE A GR
Sbjct: 475 -DFAVLSDILGDEDHLGDMDFKVAGSEAGITTMQMDIKVAGITQEIMAKALEQAKAGRQH 533
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL M + + + RT +++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 534 ILGEMAKALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDE 593
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + + + N +E + ++ I+ E EVG +Y G V ++ ++GAFV F GG+ GL+HV
Sbjct: 594 GVIKISSSNADEIEAARKWIEGIV-EEAEVGKVYNGKVVNIVDFGAFVNFMGGKDGLVHV 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 653 SEMKNERVEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVV 693
>gi|373853491|ref|ZP_09596290.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
gi|372473018|gb|EHP33029.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
Length = 751
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 300/709 (42%), Positives = 436/709 (61%), Gaps = 22/709 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K+ E+ I TG +A+FANGAV + + ET V + T+++ ++R DF PLTVDY
Sbjct: 4 KQTVEVPGLGIKFTTGDMAKFANGAVTVTVGETNVFVSATAAQ--TMRPGQDFFPLTVDY 61
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
+EK A G P Y +REG P E+E+L R+ DRP RPLFP GF +EVQ++ +LS+D
Sbjct: 62 REKYSAAGRFPGGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGLLLSADQI 121
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+ DI N SAAL +SDIPW GPIG +R+ I GQF+ NPT++++ S L+L+Y
Sbjct: 122 HEADIAMVNGASAALAISDIPWNGPIGAVRVALIDGQFVANPTIEQMFSSTLDLIYVGNE 181
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQT 295
+ LMI+ A ++ E+ L AH +A++ + IR LA +AGK K + L + +
Sbjct: 182 KDMLMIEGSADQLPEERFIEALEFAH-QAIQPIIATIRDLAARAGKPKAVFPLVVAKPEA 240
Query: 296 LEKVSNLAEAH--IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKA 351
+ + EA+F + K RG ++ + ++ + AL E E + +
Sbjct: 241 RAIIERVVPQQRVSEAIF---GFEKQVRGANINALKEEARAALLAELGEGNFADHDISIV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ ++ + R ++ GVR D R +RPI E G LP +HGS+LF RGDTQ L T TL
Sbjct: 298 FEDLQYKAYRATVLERGVRADKRDAKSLRPIASEVGVLPRVHGSALFQRGDTQGLVTATL 357
Query: 412 GAPAEAQRLESLVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
G EAQ ++ L G T K F+LHY+FPP+ + E G+ G RRE+GHG LAE++L+ VL
Sbjct: 358 GPTKEAQDMDGLTGGATSKSFILHYNFPPYSVGETGRFTGPGRREIGHGALAERSLVPVL 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
PPE+ FPYT+R+ S++MAS+GSTSMA++CGG +ALMDAG+P+ VAG+S GL++ P
Sbjct: 418 PPEDVFPYTIRLVSDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTSNKPD 477
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
G I ++ +TDILG EDH GDMDFK+AGT G+T QLD+K G+P++I + A
Sbjct: 478 -GSIDNWVTITDILGEEDHFGDMDFKLAGTTKGITGFQLDLKINGLPIEIARTAIFQARD 536
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R++IL M I APR +PR+ T++ + + + LIGP G R+I E TG +I
Sbjct: 537 ARIEILKLMLSAIPAPRKTLSAYAPRIQTIQINPEKIGLLIGPGGKTIRRIVETTGAQID 596
Query: 651 VSD---GTLTVVAKNRSVMEKVLEKVDFII--GREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+SD G + + + N M + + ++D + G +IEVG IY G V+ VKE+GAFVE
Sbjct: 597 ISDDDSGKVFIYSNNADSMNRAISEIDALCGGGSQIEVGKIYTGRVSGVKEFGAFVECLP 656
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKA 753
G++GL H+SEL+ V R DVV VG ++++CIG D R N ++LS +A
Sbjct: 657 GKEGLCHISELADFRVRRTEDVVKVGDSITVKCIGIDERTNKVRLSRRA 705
>gi|422019160|ref|ZP_16365710.1| polynucleotide phosphorylase/polyadenylase [Providencia
alcalifaciens Dmel2]
gi|414103702|gb|EKT65276.1| polynucleotide phosphorylase/polyadenylase [Providencia
alcalifaciens Dmel2]
Length = 706
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/711 (41%), Positives = 457/711 (64%), Gaps = 12/711 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+L +F+ G +TLETG IAR A AV++ MD+T V T V K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E LV R+IDRP+RPLFP GF +E+Q++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE+ + + H + ++ L ++AGK+K +++ +++
Sbjct: 181 GTDSAVLMVESEAELLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V+ LAE+ + + K ER +D I ++V AL E + + + +
Sbjct: 241 ALHDRVAALAESRMGDAYR--ITEKQERYAQVDLIKEEVIGALVAEDENVDVSEVSDILA 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K+V+R R+I R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 HLEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P +
Sbjct: 359 ERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQ 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 AEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --DFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I++PR + +PR+ T++ + D ++ +IG G++ R + EETG I +
Sbjct: 532 HILSTMEQAINSPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + ++ + +++ I E+EVG IY+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGLKAKEAIRRIEDITA-EVEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K EA V+
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMKEAVAGEEAPVQ 701
>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase [Enterobacter sp. 638]
gi|187610301|sp|A4WEX9.1|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
Length = 711
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 442/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQIDVIKSETIATLVAEDESLDANELSEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K +R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGDRTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|387121413|ref|YP_006287296.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|416034324|ref|ZP_11573306.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429734664|ref|ZP_19268671.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|444334238|ref|ZP_21149846.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347998188|gb|EGY39126.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|385875905|gb|AFI87464.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429151510|gb|EKX94376.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|443550672|gb|ELT58855.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 743
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 439/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 40 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 99
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 100 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 159
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E S L+LV A T +
Sbjct: 160 DLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAV 219
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L + GK + ++ + + KV
Sbjct: 220 LMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTALINKV 279
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV + E +E S + + ++
Sbjct: 280 KALAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAEDEEISEGKIIDIFTALESQI 337
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 338 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 397
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 398 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 457
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 458 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDK-------FVV 510
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 570
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 571 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 630
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+EVG YKG V + ++GAFV G ++GL+H+S+++
Sbjct: 631 AAVDKNAVQDVMARIEDITA-EVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAE 689
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ++ ++ + D +G I+L++K + P+ +
Sbjct: 690 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQD 730
>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
Length = 714
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 440/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 11 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 70
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 71 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 130
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 131 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 190
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 191 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKV 250
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 251 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 308
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 309 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 368
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P FPY
Sbjct: 369 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYV 428
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 429 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKE-------KFVV 481
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 482 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 541
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 542 EQAIPAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKI 601
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 602 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAE 660
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 661 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 704
>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Pm70]
gi|378773733|ref|YP_005175976.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
36950]
gi|383309735|ref|YP_005362545.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. HN06]
gi|417853812|ref|ZP_12499158.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|81636811|sp|Q9CLU1.1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
gi|338218996|gb|EGP04715.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|356596281|gb|AET15007.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
36950]
gi|380871007|gb|AFF23374.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. HN06]
Length = 714
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 441/704 (62%), Gaps = 15/704 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GFY+E+Q++A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + ++ +AGK + ++ + +EKV
Sbjct: 186 LMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD---TVR 356
+AEA + + K R E +D I DV + E E K VD +
Sbjct: 246 KAIAEARLGEAYR--ITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTALE 303
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +
Sbjct: 304 SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 363
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +F
Sbjct: 364 AQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEF 423
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 424 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK------- 476
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A RL IL
Sbjct: 477 FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHIL 536
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT
Sbjct: 537 GVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGT 596
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + + ++V+ +++ I E+E G +YKG VT + ++GAFV G ++GL+H+S+
Sbjct: 597 VKIAAVDGNSAKEVMARIEDITA-EVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQ 655
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
++ E V +VSD ++VGQ+++++ + D +G I+L++K V+P+ E
Sbjct: 656 IAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 699
>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|402775915|ref|YP_006629859.1| polynucleotide phosphorylase [Bacillus subtilis QB928]
gi|418033183|ref|ZP_12671660.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|428279266|ref|YP_005561001.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|430758907|ref|YP_007209628.1| Polynucleotide phosphorylase PnpA [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449094359|ref|YP_007426850.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis XF-1]
gi|452914057|ref|ZP_21962684.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis
MB73/2]
gi|1709698|sp|P50849.3|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase;
AltName: Full=Vegetative protein 15; Short=VEG15
gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|351469331|gb|EHA29507.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|402481096|gb|AFQ57605.1| Polynucleotide phosphorylase (PNPase) [Bacillus subtilis QB928]
gi|407959076|dbj|BAM52316.1| polynucleotide phosphorylase [Synechocystis sp. PCC 6803]
gi|407964653|dbj|BAM57892.1| polynucleotide phosphorylase [Bacillus subtilis BEST7003]
gi|430023427|gb|AGA24033.1| Polynucleotide phosphorylase PnpA [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449028274|gb|AGE63513.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis XF-1]
gi|452116477|gb|EME06872.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis
MB73/2]
gi|1589234|prf||2210369A polynucleotide phosphorylase
Length = 705
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/689 (43%), Positives = 441/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QFI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E KL I E+ EKV LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESG 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|422032546|ref|ZP_16378655.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|414016150|gb|EKS99934.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
Length = 711
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQDKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|417429166|ref|ZP_12160989.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353615662|gb|EHC67127.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 721
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/711 (41%), Positives = 445/711 (62%), Gaps = 18/711 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGD 104
PS G + L +F+ G ITLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVRKFQYGQHTITLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + L E +
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIDQLIAEDET 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+ PR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINVPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 700
>gi|433445982|ref|ZP_20410113.1| polyribonucleotide nucleotidyltransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000727|gb|ELK21619.1| polyribonucleotide nucleotidyltransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 702
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/703 (42%), Positives = 451/703 (64%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K F I R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLT
Sbjct: 1 MEQEKHVFSIDWAGRPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKSVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D P++ A +S AL +SDIP+ GPI + +GR+ G+F++NP++ ++ SD++L+ A
Sbjct: 121 DQDCSPEMAAMFGSSLALTISDIPFEGPIAGVTVGRVNGEFVINPSVAQMEQSDMHLIVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q +A K GK+K E L +
Sbjct: 181 GTKDAINMVEAGANEVPEEVMLEAIMFGHEEIKRLIAFQEDIAAKVGKEKMEVVLYELDA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAV 352
Q ++ E ++ V P K R A++++ +V A EE E DEE+++ + + +
Sbjct: 241 QLEAEIRARVEGEVKRVVQVPE--KLAREAAIEQLKAEVVAAYEEQEADEETIKQVKEIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K +R+ I E VR DGR++DE+RP+ G LP HGS LF+RG TQ L TLG
Sbjct: 299 YKLVKEEVRRLITEEKVRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L TKRFM HY+FPPF + E G G RRE+GHG L E+AL V+P
Sbjct: 359 ALGDVQILDGLGIEETKRFMHHYNFPPFSVGETGAMRGPGRREIGHGALGERALEPVIPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +G
Sbjct: 419 EKEFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVK-----SG 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E Y ILTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR
Sbjct: 474 E--HYTILTDIQGMEDHLGDMDFKVAGTEQGVTALQMDIKIKGLSREILEEALQQARKGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L+IL HM + IS PR + +P++ T++ + D +R +IGP G KI EETG +I +
Sbjct: 532 LEILKHMMQTISGPRKELSPYAPKILTMQINPDKIRDVIGPSGKQINKIIEETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTIFISSVNEEMNKKAKKIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFSGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 651 HISELAEERVGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
Length = 709
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
biprosthecum C19]
gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
biprosthecum C19]
Length = 749
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 311/701 (44%), Positives = 441/701 (62%), Gaps = 17/701 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ + R +TLETG+IAR A+ AV+ ET VL+TV ++ +DF PLTV+YQE
Sbjct: 6 RKSIDWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP Y +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VLS D + D
Sbjct: 66 KTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G I G+F++NPT D++ S L+LV A T +
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKESTLDLVVAGTTDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E+SE + A L AH +E I +AE A K+ +++ S +
Sbjct: 186 LMMVESEAKELSEDKMLAALMFAHRGMQPVIEAIIEMAEHAAKEPFDFEAEDFS-GIVTS 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFER----GEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+ L I +T K +R G A K G + K E D A
Sbjct: 245 IKGLVGQDIRDAYT--ITGKHDRHAAVGAAKSKAGLALLKT-EANPDGVDAAKFGAAFKE 301
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V+R+ II G RVDGR +D+VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 CEADVLRRDIIEHGKRVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTG 361
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G ++F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 362 DDEQYIDALDGTYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTVE 421
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYTVRV SE+ S+GS+SMATVCG S+ALMDAG+PL+ V+G+++GL+ E PS GE
Sbjct: 422 EFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILE--PS-GE- 477
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ + L A++GRL
Sbjct: 478 --YAILSDILGDEDHLGDMDFKVAGTVNGITSLQMDIKVPGITEEIMTKALRQANEGRLH 535
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL+ M + IS R + +P++ T+K D +R +IG G + R+I E+TG +I + D
Sbjct: 536 ILEEMNKAISGAREELGEFAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIQDD 595
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ + A +S ++ + V I E EVG IYKG V V ++GAFV F G + GL+H+
Sbjct: 596 GTIKISASEQSKIDAARDWVKS-IASEPEVGAIYKGKVVKVVDFGAFVNFFGAKDGLVHI 654
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
S++S E V +VSDV++ G ++ ++ +G D RG KLS+K +
Sbjct: 655 SQISKEKVGKVSDVLNEGDEVKVKFLGFDDRGKTKLSMKVI 695
>gi|384175410|ref|YP_005556795.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349594634|gb|AEP90821.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 705
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/689 (43%), Positives = 441/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QFI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E KL I E+ EKV LAE +
Sbjct: 195 EVPEEIILEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESG 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|365144133|ref|ZP_09348520.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp.
4_1_44FAA]
gi|378980868|ref|YP_005229009.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|386036720|ref|YP_005956633.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
KCTC 2242]
gi|402778829|ref|YP_006634375.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|419972234|ref|ZP_14487663.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419978229|ref|ZP_14493526.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419984969|ref|ZP_14500113.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419989185|ref|ZP_14504162.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419995313|ref|ZP_14510120.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420001326|ref|ZP_14515982.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420007136|ref|ZP_14521631.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420013017|ref|ZP_14527329.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420018740|ref|ZP_14532936.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420026292|ref|ZP_14540295.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420029666|ref|ZP_14543495.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420037496|ref|ZP_14551150.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420041290|ref|ZP_14554787.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420047456|ref|ZP_14560773.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420052761|ref|ZP_14565941.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420060308|ref|ZP_14573309.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420064912|ref|ZP_14577720.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420072122|ref|ZP_14584763.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420076854|ref|ZP_14589323.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420081957|ref|ZP_14594260.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421911616|ref|ZP_16341369.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|421919440|ref|ZP_16348942.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|424832557|ref|ZP_18257285.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424931607|ref|ZP_18349979.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425074692|ref|ZP_18477795.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|425083355|ref|ZP_18486452.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|425085328|ref|ZP_18488421.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|425093479|ref|ZP_18496563.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|428149571|ref|ZP_18997385.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|428932318|ref|ZP_19005898.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
JHCK1]
gi|428939372|ref|ZP_19012482.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
VA360]
gi|449059559|ref|ZP_21737253.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
hvKP1]
gi|187610278|sp|A6TEI3.1|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|339763848|gb|AEK00069.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
KCTC 2242]
gi|363648599|gb|EHL87757.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp.
4_1_44FAA]
gi|364520279|gb|AEW63407.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|397352062|gb|EJJ45143.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397352512|gb|EJJ45591.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397353287|gb|EJJ46362.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397368066|gb|EJJ60674.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397370017|gb|EJJ62609.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397372217|gb|EJJ64713.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397380928|gb|EJJ73106.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397385248|gb|EJJ77352.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397389983|gb|EJJ81905.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397395422|gb|EJJ87128.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397402877|gb|EJJ94472.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397405427|gb|EJJ96890.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397417242|gb|EJK08411.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397418897|gb|EJK10051.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397424893|gb|EJK15781.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397432750|gb|EJK23407.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397434169|gb|EJK24809.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397439608|gb|EJK30047.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397446810|gb|EJK37018.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452684|gb|EJK42751.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|402539780|gb|AFQ63929.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|405594895|gb|EKB68285.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|405598556|gb|EKB71758.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|405607360|gb|EKB80329.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|405611024|gb|EKB83813.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|407805794|gb|EKF77045.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410114520|emb|CCM83994.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|410118291|emb|CCM91567.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|414710000|emb|CCN31704.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426304061|gb|EKV66214.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
VA360]
gi|426307204|gb|EKV69290.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
JHCK1]
gi|427540331|emb|CCM93523.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|448874723|gb|EMB09756.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
hvKP1]
Length = 711
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|403378756|ref|ZP_10920813.1| hypothetical protein PJC66_02890 [Paenibacillus sp. JC66]
Length = 694
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/699 (43%), Positives = 447/699 (63%), Gaps = 17/699 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
K E+G R + LETG++A+ ANGAV+ +T VL TVT+S DF PLTV+Y+E+
Sbjct: 4 KIHMELGGRPLVLETGRLAKQANGAVMARYGDTAVLCTVTASSEPKDLDFFPLTVNYEER 63
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
++ G IP Y +REG P ++ +L R+ DRPIRPLFP GF ++VQ+M V+S + P
Sbjct: 64 LYSVGKIPGGYPKREGRPTQKAILASRLTDRPIRPLFPEGFRNDVQIMNIVMSVEQDCSP 123
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A TSAAL +SD+P+ GPIG + +GR+ G+F++NPT+++ ++L +V A T++
Sbjct: 124 DIVAMIGTSAALSISDVPFNGPIGGVIVGRVDGEFVINPTVEQSEKTELFVVVAGTKDAV 183
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
+M++ +A E+ E+ + + H E K ++ AE+ GK K E L ++++ V
Sbjct: 184 MMVEAEAHEVPEEVMLEAIMFGHEEIKKIVDKIAEFAEENGKPKMEVVLHEVNQEVNAAV 243
Query: 300 SNLA-EAHIEAVFTDPSYSKFERGEALDKIGQDVKK---ALEEECDEESLQVLPKAVDTV 355
A E IEAV + K R +A+D I ++ + + EE E V D V
Sbjct: 244 RAYASERLIEAVRIE---EKHARQDAIDAINEEAIEHFTTVYEETPEYLADVREVLYDIV 300
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++ V R+ I + +R DGR+LDE+RPI C++G LP HGS+LF+RG TQVL + TLGA
Sbjct: 301 KEEV-RRLITHDKMRPDGRKLDEIRPIECDTGLLPRTHGSALFTRGQTQVLSSCTLGALG 359
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q L+ L TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E
Sbjct: 360 DVQLLDGLDLQETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALEMVIPDEQQ 419
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+S A++C +MALMDAG+P++ VAG+++GL+ + D
Sbjct: 420 FPYAIRLVSEVLESNGSSSQASICASTMALMDAGVPIKAPVAGIAMGLIKDGD------- 472
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ ILTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK AGI +I+ E L A +GRL I
Sbjct: 473 QFSILTDIQGMEDHLGDMDFKVAGTDKGVTAIQMDIKIAGINREILQEALNQAKEGRLFI 532
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L+ M +I PRT+ +P++ TL+ + D +R +IG G + KI +ETG +I + DG
Sbjct: 533 LNKMLSQIEKPRTELSPYAPKITTLQINPDKIRDVIGAGGKIINKIIDETGVKIDIEQDG 592
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + ++ EK + ++ I+ RE+EVG Y G V V+++GAFVE G++GL+H+S
Sbjct: 593 KVYIASSDAAMNEKARKIIEDIV-REVEVGETYLGTVKRVEKFGAFVEVLPGKEGLVHIS 651
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+LS E V++V DVVSVG ++++ D +G I LS KA
Sbjct: 652 QLSTERVAKVEDVVSVGDSITVKVTEIDSQGRINLSRKA 690
>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
Length = 718
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/705 (41%), Positives = 444/705 (62%), Gaps = 17/705 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQ 117
F ++F+ G +TLETG +AR A AV+ MD+T V TV + K +DF PLTV+YQ
Sbjct: 4 FVKQFKYGQHTVTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNYQ 63
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
E+ +A G IP + +REG P E E L+ R+IDRPIRPLFP GF +E+Q++A+V+S + +
Sbjct: 64 ERSYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQI 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
PD++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLDLVVAGTDK 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A ++E+ + A + H + +E A +AGK + +++ +E +
Sbjct: 184 AVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAAEAGKPRWDWQAPAKNEALIN 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAVDTVR 356
++ L+EA + + K R E +D I DV L E ++ES+ K +D +
Sbjct: 244 RIKELSEARLGEAYR--ITEKQARYEQIDVIKADVCATVLAENSEDESI-TEGKIIDIIH 300
Query: 357 K---RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ RV+R RI+A R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG
Sbjct: 301 ELESRVVRSRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P
Sbjct: 361 ERDAQIIDELTGERTDHFLFHYNFPPYSVGETGLIGSPKRREIGHGRLAKRGVAAVMPTL 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPY VRV SE+ S+GS+SMA+VCG S++LMDAG+P++ VAG+++GLV E D
Sbjct: 421 EEFPYVVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDK---- 476
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+
Sbjct: 477 ---FVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL+ ME+ I PR +PR+ T+K D ++ +IG GA+ R + EETG I +
Sbjct: 534 HILNVMEQAIQTPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDD 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + V+ +++ I+ E+EV IY+G VT + ++GAFV G ++GL+H
Sbjct: 594 DGTVKIAATDNNAAKAVMSRIEDIVA-EVEVNKIYQGKVTRIVDFGAFVVVLGNKEGLVH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
+S++S E V +VSD + VGQ++ ++ + D +G I+L++K + P+
Sbjct: 653 ISQISDERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLQPK 697
>gi|421491575|ref|ZP_15938938.1| PNP [Morganella morganii subsp. morganii KT]
gi|455737323|ref|YP_007503589.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
subsp. morganii KT]
gi|400194009|gb|EJO27142.1| PNP [Morganella morganii subsp. morganii KT]
gi|455418886|gb|AGG29216.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
subsp. morganii KT]
Length = 718
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/700 (41%), Positives = 445/700 (63%), Gaps = 19/700 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQ++A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL++S L+LV A T+ L
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGFINDQYVLNPTTDELAVSKLDLVVAGTKGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+ ++E+ + + H + +E LA +AGK K +++ +++ ++V+
Sbjct: 188 MVESEAQLLTEEQMLGAVVFGHEQQQIVIENINALAAEAGKPKWDWQPEPVNQTLRDRVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-------EECDEESLQVLPKAVD 353
L+E + + K +R +D I ALE EE E + +
Sbjct: 248 ELSEKALGDAYR--ITEKQDRYAQVDIIKDATISALEAEFAARGEELTGELKHEISDILA 305
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG
Sbjct: 306 AVEKSVVRTRVLNGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 365
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ ++G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P +
Sbjct: 366 ARDAQTLDQVMGEITDTFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQ 425
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 426 EEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDD----- 480
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 481 --KFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARL 538
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I++PR +PR+ T++ + D ++ +IG G++ R + EETG I +
Sbjct: 539 HILGVMEQAINSPRADISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIED 598
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I E+EVG IY G V + ++GAFV GG++GL+H
Sbjct: 599 DGTVKIAATDGDKAKMAIRRIEEITA-EVEVGRIYNGKVVRIVDFGAFVAIGGGKEGLVH 657
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +VSD + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 ISQIADKRVEKVSDYLEMGQEVPVKVLEIDRQGRIRLSMK 697
>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
Length = 709
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris HaA2]
gi|123099194|sp|Q2J2J4.1|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris HaA2]
Length = 718
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/724 (42%), Positives = 448/724 (61%), Gaps = 23/724 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGK+AR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A SAAL LS P+ GPIG R+G I ++++NP +DE+ + L LV A T +
Sbjct: 127 DILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLELVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E+SE+ + + H ++ I LAEKA K+ +E L +I + +EK
Sbjct: 187 LMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRE--LVVIDDSAIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ L E + A + P K ER A+ K+ + E +E L A +
Sbjct: 245 MLGLVEQELRAAYAIPV--KQERYAAVGKVKEKAIAHFFPEGEEPKYDKLRIAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I E+G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE--R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + + R + ++PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + ++ ++ + I + EVG IY+G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGESIKAAIKWIKS-IASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV--KGVVEGSVPVN 773
L+ V + SDVV G ++ ++ +G D RG +LS++ V D+ K EG P
Sbjct: 655 LASGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMRVVDQETGEDLEAKQKAEGEAPA- 713
Query: 774 KQAT 777
QAT
Sbjct: 714 -QAT 716
>gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
Length = 711
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/699 (43%), Positives = 433/699 (61%), Gaps = 18/699 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
++E E G R + LETGKIAR ANGAV++ +T VL T ++K DF PLTV+YQE
Sbjct: 14 RKEIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLTVNYQE 73
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +E QV+ +VLS D + D
Sbjct: 74 KAFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSHDLEND 133
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ SAAL +S IP+ GPIG R+G GQ+I+NPTMD++ +DL+LV A T E
Sbjct: 134 PDIVSMVGASAALTISGIPFLGPIGAARVGYKNGQYILNPTMDQVEDTDLDLVVAGTTEG 193
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE- 297
LM++ +A+E++E+ + + H + I LAE+A K+ + + L+
Sbjct: 194 VLMVESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAKEPWDLPEPAYDRKALKA 253
Query: 298 KVSNLAEAHIEAVFTDP-SYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
++ A +EA +T+ S++E K+G KALE +E Q + +
Sbjct: 254 RLRETVGAAVEAAYTETVKQSRYE------KVGAAKAKALETLAEEFDAQSIGFEFKELE 307
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R ++ G R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 308 ADILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQD 367
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +LP + DF
Sbjct: 368 EQIIDALEGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKEDF 427
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SEV S+GS+SMATVCG S++LMDAG PL VAG+++GL+ E
Sbjct: 428 PYTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIK-------EDHG 480
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT +GVTA+Q+DIK I +I+ L A GRL IL
Sbjct: 481 FAVLSDILGDEDHLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHIL 540
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + N+PR+ + + +R +IG G + R+I E+TG +I + DGT
Sbjct: 541 GEMAKALTGAREGVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIDDDGT 600
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V A ++ + +E + I+ E E+G +Y G V V ++GAFV F G + GL+H+SE
Sbjct: 601 VKVSAVDQKKSDAAIEWIKGIVA-EPEMGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISE 659
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ + V +VSDVVS G + ++ IG D RG +KLS+K V
Sbjct: 660 LAQQRVGKVSDVVSQGDSVKVKVIGFDDRGKVKLSMKQV 698
>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
Length = 707
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/698 (42%), Positives = 440/698 (63%), Gaps = 13/698 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQIVIENINALVAEAGKPKWDWHAEPVNEALRARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA A + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELATARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSVEKDVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P DFPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAADFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
V +V+D + +GQ++ ++ + D +G I+LS+K A +P
Sbjct: 658 RVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIKEATTP 695
>gi|410086374|ref|ZP_11283086.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
SC01]
gi|409767219|gb|EKN51299.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
SC01]
Length = 718
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/700 (41%), Positives = 445/700 (63%), Gaps = 19/700 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQ++A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL++S L+LV A T+ L
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGFINDQYVLNPTTDELAVSKLDLVVAGTKGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+ ++E+ + + H + +E LA +AGK K +++ +++ ++V+
Sbjct: 188 MVESEAQLLTEEQMLGAVVFGHEQQQIVIENINALAAEAGKPKWDWQPEPVNQTLRDRVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-------EECDEESLQVLPKAVD 353
L+E + + K +R +D I ALE EE E + +
Sbjct: 248 ELSEKALGDAYR--ITEKQDRYAQVDIIKDATISALEAEFAARGEELTGELKHEISDILA 305
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG
Sbjct: 306 AVEKSVVRTRVLNGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 365
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ ++G T F+ HY+FPP+C+ E G RRE+GHG LA++ +LAV+P +
Sbjct: 366 ARDAQTLDQVMGEITDTFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQ 425
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 426 EEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGD----- 480
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL
Sbjct: 481 --KFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARL 538
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I++PR +PR+ T++ + D ++ +IG G++ R + EETG I +
Sbjct: 539 HILGVMEQAINSPRADISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIED 598
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I E+EVG IY G V + ++GAFV GG++GL+H
Sbjct: 599 DGTVKIAATDGDKAKMAIRRIEEITA-EVEVGRIYNGKVVRIVDFGAFVAIGGGKEGLVH 657
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +VSD + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 ISQIADKRVEKVSDYLEMGQEVPVKVLEIDRQGRIRLSMK 697
>gi|392980847|ref|YP_006479435.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. dissolvens SDM]
gi|392326780|gb|AFM61733.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. dissolvens SDM]
Length = 712
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKDETIATLVAEDETLDANELSEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|443632661|ref|ZP_21116840.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443347484|gb|ELS61542.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 705
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/689 (42%), Positives = 440/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QFI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAE 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E L + E+ EKV LAE +
Sbjct: 195 EVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEITLYEVDEELSEKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKMVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSRYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|393765757|ref|ZP_10354318.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
GXF4]
gi|392728993|gb|EIZ86297.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
GXF4]
Length = 740
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/708 (42%), Positives = 447/708 (63%), Gaps = 17/708 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK+AR A+GAV+ ET VL+TV ++K DFLPLTV+YQE
Sbjct: 6 REELMWGDRKLVLETGKVARQADGAVLATYGETSVLATVVATKEPKPGIDFLPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL+ D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVNGWRNDTQVVVTVLTHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNLVYACTRE 237
PDI++ A SAAL LS +P+ GPIG R+G + G + +NP + E S L+LV A T++
Sbjct: 126 PDIVSMVAASAALTLSGVPFMGPIGAARVGYVNGGYKLNPLVTETKEESSLDLVVAGTQD 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+SE + + H +E IRLAEKA K+ ++++ +E
Sbjct: 186 AVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQAP--ENADVE 243
Query: 298 K-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES-LQVLPKAVDTV 355
K V + E + A +T K ER A+D + V AL E E+ + + A
Sbjct: 244 KAVLEICETELRAAYT--KTVKQERYAAVDAVKAKVMAALCPEGTEKYPAEKVKAAFKEA 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+ +V+R ++ G R+DGR L VRPI E G LP HGSSLF+RG+TQ L TLG
Sbjct: 302 QSKVVRWNVLDTGSRIDGRDLKTVRPIISEVGVLPRAHGSSLFTRGETQALVVATLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQFIDSLDGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+R+ SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E GE
Sbjct: 422 FPYTIRIVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----GE-- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A GR I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTDEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M + ++A R + +PR+ T++ D +R +IG G + R+I E+TG +I++ D G
Sbjct: 535 LSEMSKALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDTG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + ++ + I+ E E G IY G + E+GAFV F G + GL+H+S
Sbjct: 595 IVKIASADGKAIKAAYNWIRSIVA-EPETGMIYDGTIVKCMEFGAFVNFFGAKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
EL+ + V++V+DVV G ++ ++ +GQD RG I+LS++ V + D+
Sbjct: 654 ELAAQRVAKVTDVVKEGDKVKVKFLGQDDRGKIRLSMRVVDQQTGEDI 701
>gi|427427499|ref|ZP_18917543.1| Polyribonucleotide nucleotidyltransferase [Caenispirillum salinarum
AK4]
gi|425883425|gb|EKV32101.1| Polyribonucleotide nucleotidyltransferase [Caenispirillum salinarum
AK4]
Length = 708
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/706 (41%), Positives = 433/706 (61%), Gaps = 23/706 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
+ F++E + G R + LETGK+AR A+GAV++ +T VL+T SK S DF PLTV
Sbjct: 3 MFNVFRKEIDWGGRKLVLETGKVARQADGAVMVTYGDTTVLATAVGSKTKSNFDFFPLTV 62
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK FA G IP + +REG P E+E L R+IDRPIRPLF G+ E QV+ +VLS D
Sbjct: 63 NYQEKTFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAEGYRSETQVVCTVLSHD 122
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI+A SAAL +S +P+ GPIG R+G + G++++NPT D++ + L+LV A
Sbjct: 123 MENDPDIVAMIGASAALTISGLPFLGPIGAARVGYVDGEYVLNPTSDQMKQTGLDLVVAG 182
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY-----KLS 289
T + LM++ QA E+SE + + H + + I +A ++ +E +++
Sbjct: 183 TTQGVLMVESQANELSEDVMLGAVNFGHEQFQPVIAAIIEMARNCAREPREIAPAAPEVA 242
Query: 290 MISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP 349
++ ++ +AEA+ +K ER +AL I Q ++L E +E + V
Sbjct: 243 IVKDKAEAIRGQVAEAY-------KIVNKTERQDALSAIRQAFVESLGE--NEAEIAVAG 293
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
K + + V+R+ ++ G R+DGR VR I E G LP HGS+LF+RG+TQ + TV
Sbjct: 294 KVLKGLESEVMRRSVLETGKRIDGRDTKTVRAIESEVGFLPRAHGSALFTRGETQAMVTV 353
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +
Sbjct: 354 TLGTGQDEQIIDALEGEYREHFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIKPL 413
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + DFPYT+RV SE+ S+GS+SMATVCG S+A+MD G+PL VAG+++GL+ E D
Sbjct: 414 LPKKEDFPYTMRVVSEITESNGSSSMATVCGTSLAMMDGGVPLPRPVAGIAMGLIKEDD- 472
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK I +I+ L A
Sbjct: 473 ------GFAVLSDILGDEDHLGDMDFKVAGTETGVTSLQMDIKITSITKEIMEVALRQAR 526
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GRL IL M ++ R N+PR+ T+ + +R +IG G + R+I E+TG +I
Sbjct: 527 DGRLHILGEMANALTGAREGVAANAPRITTITINPSKIRDVIGSGGKVIREITEQTGTKI 586
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + + + +K + + I+ E EVG IY G V + ++GAFV F G +
Sbjct: 587 DIDDDGTIKIASADPEATDKAVAWIKGIVA-EPEVGVIYTGKVVKIMDFGAFVNFLGSRD 645
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+SEL+ V V DVVSVG + ++CIG D RG +KLS+K V
Sbjct: 646 GLVHISELAQNRVKNVGDVVSVGDMVKVKCIGFDDRGKVKLSMKQV 691
>gi|417841284|ref|ZP_12487388.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19501]
gi|341949322|gb|EGT75926.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19501]
Length = 709
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 441/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I D+ + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADLISQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|81702393|sp|Q74CS9.1|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 697
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 305/697 (43%), Positives = 431/697 (61%), Gaps = 17/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K E G R IT+ TGK A+ A+GAVV+ +T VL T ++K +DF PLTV+YQE
Sbjct: 5 KVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P + E L R IDRPIRPLFP F ++ Q+MA+V+S+D D
Sbjct: 65 KAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDND 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
P I+A SAAL +SDIP+ GPI +++GR+ GQF+ NPT+++L SDL +V A +R+
Sbjct: 125 PGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRDA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A E SEKD+ + H +E Q L + AG K+E + + E +
Sbjct: 185 VIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKTR 244
Query: 299 VSNLAEAHI-EAVFTDPSYSKFERGEALDKI-GQDVKKALEEECDEESLQVLPKAVDTVR 356
V +LA A I EAV +K ER + +I Q ++ L E ES + +
Sbjct: 245 VKDLAYAGIKEAVRI---VAKQERHNRIGEITAQTLETLLPEYEGRES--EIKGFLGDFE 299
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R+ II +G R+DGR +RPI E LP HGS+LF+RG+TQ L TLG +
Sbjct: 300 YELVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSID 359
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
QR++SL G KRF+LHY+FPPF + E R+ RRE+GHG LAE+AL V+P DF
Sbjct: 360 EQRIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDF 419
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+R+ S+++ S+GS+SMATVCGG++A+MDAG+P++ VAG+++GL+ E GE
Sbjct: 420 PYTIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKE-----GE--G 472
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
IL+DILG EDHLGDMDFK+AGT GVTAIQ+DIK G+ +I+ + L A GRL IL
Sbjct: 473 IAILSDILGDEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHIL 532
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GT 655
M + I+APRT +PR+ T+ D +R +IG G R I E TG I + D G
Sbjct: 533 GKMNQAIAAPRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGR 592
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + ++ +K ++ + + E E G +Y G V V ++GAFVE G GL+H+SE
Sbjct: 593 INIASTSKEACDKAIKMIRDLTA-EAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISE 651
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
L E V V+DV++ G ++ ++CIG D +G IKLS K
Sbjct: 652 LDTERVKNVTDVLNEGDKVLVKCIGIDKQGKIKLSRK 688
>gi|384214500|ref|YP_005605664.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 6]
gi|354953397|dbj|BAL06076.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 6]
Length = 717
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/713 (42%), Positives = 440/713 (61%), Gaps = 19/713 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A+SAAL LS P+ GPIG R+G +FI+NPT+DE+ + L+LV A T +
Sbjct: 127 DIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E + + H + I LAEKA K+ +E +++I LEK
Sbjct: 187 LMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTVIDNSALEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTVR 356
+ L E + A + P K +R A+ K+ + V E E L +
Sbjct: 245 MLGLVEQELRAAYAIPV--KQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRVSGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E K
Sbjct: 423 PYTTRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLIL-------EDKR 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A +GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMKVALGQAKEGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMAKALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEG 768
L+ V + SDVV G ++ ++ +G D RG +LS+K V D++G EG
Sbjct: 655 LASARVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQATGEDLEGKGEG 707
>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|452745241|ref|ZP_21945077.1| polynucleotide phosphorylase/polyadenylase [Mannheimia haemolytica
serotype 6 str. H23]
gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|452086634|gb|EME03021.1| polynucleotide phosphorylase/polyadenylase [Mannheimia haemolytica
serotype 6 str. H23]
Length = 716
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/717 (40%), Positives = 446/717 (62%), Gaps = 12/717 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV + T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVSGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAE + + K R E +D I +V L E + S + + + ++
Sbjct: 246 KALAETRLGDAYR--IVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + + LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EET I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IY G VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDGNAAKAVMARIEEIVA-EVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQ 775
E V RV+D ++VGQ++ ++ + D +G I+L++K ++ EA+ + V +V +Q
Sbjct: 656 ERVERVADYLTVGQEVQVKVVEIDRQGRIRLTMKDINNTNEANAEETVAENVVETEQ 712
>gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 763
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 440/705 (62%), Gaps = 17/705 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 LEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +RE E+E LV R+IDRP+RPLFP GFY+E+ V+A V+S DG+ +P
Sbjct: 67 FSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A SAAL +S +P+ GPIG R+G G++ +NP M +++ L+LV A T
Sbjct: 127 DIVAMIAASAALTISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLDLVVAATDTAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
+M++ +A+E++E ++ + AH E+ K + I LAEKA K E L+ + K+
Sbjct: 187 MMVESEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKAAKDPWEVDLTDNTADIKAKL 246
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
++ I A + +K ER AL+ K A EE + + V K + V +
Sbjct: 247 KSIVGDDIAAAYK--LTNKSERANALNAARDKAKAAFSEESPQTQM-VAIKTLKKVESDI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R I+ +G R+DGR + +VRPI G LP HGS+LF+RG+TQ +CT TLG Q
Sbjct: 304 VRTAILKDGQRIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKDAEQM 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G +RFMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP + DFPYT
Sbjct: 364 IDGLDGLTYQRFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALNPVLPSKEDFPYT 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+RV S+V S+GS+SMATVCGG ++LMDAG+P+ V+G+++GL+ E D D+ +
Sbjct: 424 IRVLSDVTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGD-------DFTV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I L A GR IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
R + RT+ ++PR+ T+ D +R +IG G + R+I TG ++ + D G + +
Sbjct: 537 TRALGEVRTELSAHAPRIETISIDKSKIREVIGTGGKVIREIVATTGAKVDIDDEGVIKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ + + +E + + I+ E EVG +Y G V ++ ++GAFV F GG+ GL+HVSE+ +
Sbjct: 597 SSADVAQIEAAKKWILGIV-EEPEVGKVYNGKVVNIVDFGAFVNFMGGRDGLVHVSEMKN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
E V + +DVV GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 656 ERVEKPTDVVKEGQEVKVKVLEIDNRGKVRLSMRLVDQETGAEIE 700
>gi|188996726|ref|YP_001930977.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
sp. YO3AOP1]
gi|254782742|sp|B2V900.1|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 703
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 308/715 (43%), Positives = 447/715 (62%), Gaps = 15/715 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVL-STVTSSKGDSVRDFLPLTV 114
+E K E + ++ETG A+ ANGAV++ +T VL + V S + + DFLPLTV
Sbjct: 1 MEEIKIETVVNGAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+Y+EK +A G IP +++REG P ERE+LV R IDRPIRPLFP GFY++V + A LS+D
Sbjct: 61 EYREKYYAYGKIPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSAD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPD++ SAAL +SDIP+ GPI +R+ R+ GQFIVNPT + + SDL +V A
Sbjct: 121 DQYDPDVLGIVGASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
+++ +M++ A+E+ E+ + + H E K +E Q L K GK+K E +
Sbjct: 181 SKDAIVMVEGGAKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKEKIEIPIDEEEIL 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
EK LA I+ F K ER + ++ I +++K L E EE ++
Sbjct: 241 LKEKFKELAYVRIKEAFN--ISDKKERNKQINAIFEEIKTTL--EIPEEKVKKASFVYKD 296
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V V+R ++ E +R+DGR+ +E+RPI+ + G P HGS++F+RG TQ TVTLG+P
Sbjct: 297 VVSNVMRDLVLYENIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSP 356
Query: 415 AEAQRLESL-VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+E Q ES+ G KRFMLHY+FPPF E ++RRE+GHG LAE+AL ++P E
Sbjct: 357 SEGQIEESIEAGETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSE 416
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPY +RV S+++ S+GSTSMATVCGGS+AL DAG+P+++HVAG+++GL+ D
Sbjct: 417 EEFPYVIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSED----- 471
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGTR GVT+IQ+DIK G+ +I+ + LE A +GR
Sbjct: 472 --KFVVLSDILGDEDHLGDMDFKVAGTRDGVTSIQMDIKVKGLTREILQKALEQAREGRN 529
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS- 652
ILD M + I PR + +P + TL+ + + +IGP G +KI EETG +I +
Sbjct: 530 YILDLMYQAIPEPRKELSPYAPTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDP 589
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
G + + A ++ EK ++ ++ +I +IE+G +Y G VT V++YGAFVE G+ LLH
Sbjct: 590 TGLVKIYATSKIAAEKAIDMINQLI-MDIELGEVYLGKVTRVEDYGAFVELMPGKLSLLH 648
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVE 767
VS++S E + DVV VG L ++ D +G IK+SLK V EA K + E
Sbjct: 649 VSQISSERLKSAKDVVKVGDVLKVKVSEIDDQGRIKVSLKDVPENVEAKNKFLFE 703
>gi|419801849|ref|ZP_14327052.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK262]
gi|385192216|gb|EIF39622.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK262]
Length = 712
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/708 (41%), Positives = 449/708 (63%), Gaps = 18/708 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHI-EAVFTDPSYSKFERGEAL--DKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
+AEA + +A +++E+ +A+ D I Q A +EE E + + A+++
Sbjct: 246 KAIAEARLGDAYRITEKQARYEQIDAIKADMIAQ--ITAADEEISEGKIVDIFTALES-- 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +
Sbjct: 302 -QIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------K 473
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL
Sbjct: 474 FVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHIL 533
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT
Sbjct: 534 GVMEQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGT 593
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + S + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+
Sbjct: 594 VKIAAVDSSAAKNVMVRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQ 652
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
++ E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E + +
Sbjct: 653 IAEERVEKVSDYLQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAE 700
>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
gi|254782723|sp|B8CW78.1|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
Length = 705
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/693 (42%), Positives = 435/693 (62%), Gaps = 20/693 (2%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNT 129
+ ETGK A+ ANG+VV +T VL T T S+ D+ PL V+Y+E+ +A G IP +
Sbjct: 14 MKFETGKYAKQANGSVVARYGDTTVLVTATMSEPREGIDYFPLMVNYEERVYAIGKIPGS 73
Query: 130 YMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSA 189
RREG P++ L R+IDRP+RPLFP GF H+VQ++A+VLS D +PDI+A N S
Sbjct: 74 ITRREGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDILALNGASV 133
Query: 190 ALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREI 249
AL LSDIP+ GPIG +++G + G+ ++NP +E S L+L A TR+ LM++ A E+
Sbjct: 134 ALTLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDLTVAGTRDAVLMVEAGANEV 193
Query: 250 SEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEA 309
SE + + LAH E + + Q + E+AGK+K E+ I+ + E++ + +E
Sbjct: 194 SEDVMLDAIELAHQEIKRLVLLQEEIGEEAGKKKFEFTKDEITPELDEEIRKYISSDMEN 253
Query: 310 VFTDPSYSKFERGEALDKIGQDV---------KKALEEECDEESLQVLPKAVDTVRKRVI 360
P K ER +D+I ++ L+ E + L+++ + ++ V K +
Sbjct: 254 ALRIPE--KLERNAKVDEIKENTLQYFEDMFENNGLDNEEKNKQLKMVERTIEKVMKEKV 311
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK II EG+R DGR+ DE+RPI+CE G LP +HGS +F+RG TQ L VTLGA ++ Q L
Sbjct: 312 RKMIIEEGIRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGATSDEQIL 371
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
L TKR+M HY+FPP+ + E RRE+GHG L E+AL V+P + +FPYT+
Sbjct: 372 FGLGEEETKRYMHHYNFPPYSVGETSPLRSPGRREIGHGALGERALQPVIPDQEEFPYTI 431
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SEV+ S+GSTS A++CG ++ALMDAG+P++E VAG+++GL+ E + IL
Sbjct: 432 RVVSEVLESNGSTSQASICGSTLALMDAGVPIKEPVAGIAMGLLKEDEKVV-------IL 484
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DI GLED GDMDFK+AGTR G+TA+Q+DIK GI +I+ + L+ A +GRL ILD M
Sbjct: 485 SDIQGLEDFYGDMDFKVAGTRNGITALQMDIKIHGISKEILKKALKRAREGRLYILDKML 544
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I PR + +P + T+K D +R +IGP G + KI +ETG I + DG++ ++
Sbjct: 545 QVIDKPRPELSPYAPLMITMKVSPDKIRHIIGPGGKIINKIIDETGVEIDIDDDGSVYIL 604
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A+++ + E ++ + +E+EVG IY+G V + +GAFVE G++GL+H+SEL+
Sbjct: 605 AQDQESGNRAKEIINKLT-KEVEVGDIYEGRVKKITNFGAFVEILPGREGLVHISELADH 663
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V D+V +G ++ ++ I D G I LS K
Sbjct: 664 HVKKVEDIVKIGDRIPVKVIEIDELGRINLSRK 696
>gi|354581526|ref|ZP_09000430.1| polyribonucleotide nucleotidyltransferase [Paenibacillus lactis
154]
gi|353201854|gb|EHB67307.1| polyribonucleotide nucleotidyltransferase [Paenibacillus lactis
154]
Length = 697
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/697 (42%), Positives = 439/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV++ +T VL TVT+S DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRPLVLETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ G F+VNPT+ E SD+ LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVNGNFVVNPTIAEQEASDIYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E+ + + H E K + L AGK+K E KL + E +V
Sbjct: 186 VEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAVAGKEKMEVKLHAVDENVNREVRE 245
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
AEA +EAV + ++ R +A+D I ++ EE+ E E L+ + + + + K
Sbjct: 246 FAEARLVEAVRIEEKHA---RQDAIDAINEETYTVFEEKYIETPELLKDVKEVLHDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR L E+RPI C++G LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRGLSEIRPIECDTGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEAEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + GE
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKD-----GE--HVS 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
ILTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ E L+ A +GR+ IL
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR + +P++ T++ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MMEVIKEPRASLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N + K L ++ I+ +E+ VG IY G V ++++GAFVE + GL+H+S+LS
Sbjct: 596 IASSNEEMNRKALTIIEGIV-KEVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++++ D +G I LS KAV
Sbjct: 655 TERVAKVEDVVAIGDVITVKVTEIDQQGRINLSRKAV 691
>gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
sp. IMCC9063]
Length = 695
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/704 (42%), Positives = 454/704 (64%), Gaps = 16/704 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+E G + +TLETG++AR A+GAV+L ET +L+T ++K DF PLTV+YQE
Sbjct: 6 KKEITWGDKKLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +RE P E E L+ R+IDRPIRPLFP+ F +E QV+ +V+S D + D
Sbjct: 66 KYYAAGKIPGGYFKREARPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISYDKEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
P+ +A A+SAAL +S IP+ GP+ ++G I G+F++NPT +++ S L L+ A T +
Sbjct: 126 PEALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQLELIVAGTEDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A +SEK + ++ H +A + + A++AGK++ + + SE EK
Sbjct: 186 VLMVESEASGLSEKQMLDAVKFGHDKAKEVINLIKDFAKEAGKERWKIEEKDYSELK-EK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+S+ ++ F D S + G L +D A+ E + S + +V K+
Sbjct: 245 ISSAVADDLQKAF-DESDKQIRTG--LIAAAKDKVTAMFEGDETYSKVEIGDQFKSVEKK 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R +I+ + R+D R+L+EVR I CE G LP +HGSSLF+RG+TQ L TLG + Q
Sbjct: 302 IVRTQILKDSKRIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDDEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
RLE+L G RFMLHY+FPP+ + EVG R+G RRE+GHG LA +A+ + LP + +FPY
Sbjct: 362 RLETLDGAERSRFMLHYNFPPYSVGEVG-RIGTGRREIGHGKLAWRAINSSLPSKEEFPY 420
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T R+ SE+ S+GS+SMATVCG S+ALMDAG+P++ +AG+++GL+ E D DY
Sbjct: 421 TFRIVSEITESNGSSSMATVCGASLALMDAGVPIKTPIAGIAMGLIKEGD-------DYS 473
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI DI+ + L+ A +GR+ IL
Sbjct: 474 ILSDILGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFDIMEKALDQAKEGRIHILGE 533
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLT 657
M + ++ R + +N+P++ ++ D + +IG GA R+I E +G ++ ++ DG +T
Sbjct: 534 MAKALTESRKELSKNTPKMERIQVDKKDIAAVIGKGGATIREIVELSGAKLDINDDGMVT 593
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ A + K ++ V I+ + E+G IYKG V + E+GAFV F G Q GL+H+S+L+
Sbjct: 594 IAAADEESRMKAVQMVKDIVAKP-EMGKIYKGKVVKIMEFGAFVNFLGKQDGLVHISQLA 652
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+ V VSDVV G ++S++ +G D RG +KLS+K V+ ++D
Sbjct: 653 AKRVENVSDVVKEGDEVSVKVVGFD-RGKVKLSMKEVTEDTKSD 695
>gi|417683926|ref|ZP_12333268.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
Length = 696
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/690 (42%), Positives = 442/690 (64%), Gaps = 22/690 (3%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPN 128
+TLETG +AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP
Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A S
Sbjct: 61 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIE 308
+SE + + H + ++ L ++AGK + +++ ++E +V+ LAEA +
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 240
Query: 309 AVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKR 363
+ TD K ER +D I + L +E DE L + A++ K V+R R
Sbjct: 241 DAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSR 293
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L
Sbjct: 294 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 353
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
+G T F+ HY+FPP+ + E G RRE+GHG LA++++LAV+P + FPYTVRV
Sbjct: 354 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVV 413
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y +L+DI
Sbjct: 414 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDI 466
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
LG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I
Sbjct: 467 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 526
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKN 662
+APR +PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A +
Sbjct: 527 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 586
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
+ + +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ + V
Sbjct: 587 GEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 645
Query: 723 RVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 675
>gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter
cancerogenus ATCC 35316]
gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter
cancerogenus ATCC 35316]
Length = 711
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 445/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I +V L E + + +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSEVTATLVAEDETLDANEIGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRVYAGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|415757846|ref|ZP_11481479.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416049988|ref|ZP_11576804.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416067609|ref|ZP_11582353.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347990983|gb|EGY32497.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001986|gb|EGY42709.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655342|gb|EGY70801.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 752
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 439/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 49 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 108
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 109 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 168
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E S L+LV A T +
Sbjct: 169 DLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAV 228
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L + GK + ++ + + KV
Sbjct: 229 LMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTALINKV 288
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV + E +E S + + ++
Sbjct: 289 KALAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAEDEEISEGKIIDIFTALESQI 346
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 347 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 406
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 407 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 466
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 467 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDK-------FVV 519
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 520 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 579
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 580 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 639
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+EVG YKG V + ++GAFV G ++GL+H+S+++
Sbjct: 640 AAVDKNAVQDVMARIEDITA-EVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAE 698
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ++ ++ + D +G I+L++K + P+ +
Sbjct: 699 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQD 739
>gi|334125777|ref|ZP_08499763.1| polyribonucleotide nucleotidyltransferase [Enterobacter hormaechei
ATCC 49162]
gi|419959498|ref|ZP_14475551.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae GS1]
gi|333386539|gb|EGK57752.1| polyribonucleotide nucleotidyltransferase [Enterobacter hormaechei
ATCC 49162]
gi|388605579|gb|EIM34796.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae GS1]
Length = 712
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEAAND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I +V L E + + +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSEVTATLVAEDETLDANEIGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase [Bradyrhizobium japonicum USDA 110]
gi|81740094|sp|Q89WB3.1|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 110]
Length = 720
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/699 (43%), Positives = 437/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+A+VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A+SAAL LS P+ GPIG R+G + ++++NPT+DE+ + L+LV A T +
Sbjct: 127 DIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E + + H + I LAEKA K+ +E +++I LEK
Sbjct: 187 LMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTVIDNAALEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ L E + A + P K +R A+ K+ + V E E L A +
Sbjct: 245 MLGLVEQELRAAYAIPV--KQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E K
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLIL-------EDKR 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMKVALGQAKDGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMAKALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + M+ ++ + I E EVG IY G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGEAMKAAIKWIKS-IASEPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 655 LASARVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|419839523|ref|ZP_14362930.1| polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
HK386]
gi|386909383|gb|EIJ74058.1| polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
HK386]
Length = 709
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 440/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I D + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADAIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Rickettsiella
grylli]
gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Rickettsiella
grylli]
Length = 712
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 313/718 (43%), Positives = 454/718 (63%), Gaps = 30/718 (4%)
Query: 57 ETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK--GDSVRDFLPLTV 114
++ K+ + GS I LETGKIAR A +V++ + VL TV +K D RDF PLTV
Sbjct: 11 KSIKKVVQFGSEEIILETGKIARQATASVLVSVGGVTVLVTVVGNKRQTDENRDFFPLTV 70
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
YQE+ +A G IP Y +REG P E+E+L R+IDRPIRPLFP GFY+EVQV+A+VLSS
Sbjct: 71 QYQERTYAAGRIPGGYFKREGRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLSST 130
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+PDI A SAAL LS +P+ PI +R+G GQ+I+NP+M EL SDL+LV A
Sbjct: 131 PDINPDIPALIGASAALALSGLPFKEPIAAVRVGYADGQYILNPSMKELETSDLDLVVAA 190
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + LM++ QA E+SE+ + + H + ++ LA +A K + K +++S
Sbjct: 191 TEKAVLMVESQAAELSEEIMLKAILFGHQQMQGVIQSIKELAIEASKPAWDIK-TLVSMD 249
Query: 295 TLEKVSNLAEAHIEAVFTDPSYS-----KFERGEALDKIGQDVKKALEEECDEESLQVLP 349
+++ +A I+++ T + + KF R LD+I ++ + + DEE +
Sbjct: 250 -----AHVEQAIIQSIDTSLTEAYQIPEKFMRKFKLDEIREN---TMAQWLDEEK-GITA 300
Query: 350 KAVDTV----RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
KA+ V ++++R RI++ R+DGR VRPI E G LP HGS+LF+RG+TQ
Sbjct: 301 KAIQFVLEKREEKIVRSRILSGQSRIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQA 360
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG +AQ +E+L G + FMLHY+FPP+ + E G+ RRE+GHG LA++A
Sbjct: 361 LVVTTLGTDRDAQTVEALDGEGRETFMLHYNFPPYSVGETGQIGSPKRREIGHGNLAKRA 420
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
L AVLP E+DFPY +RV SE+ S+GS+SMATVCG S+ALMDAG+PL++HVAG+++GL+
Sbjct: 421 LRAVLPSESDFPYVLRVVSEITESNGSSSMATVCGASVALMDAGVPLKKHVAGIAMGLIK 480
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L
Sbjct: 481 E-----GE--QFAVLTDILGDEDHLGDMDFKVAGTVDGVTALQMDIKIEGITEEILKVAL 533
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A +GRL IL M+ ++ PR + +PR+ TLK + + +R LIG GA R I EET
Sbjct: 534 NQAREGRLHILSIMKEALAEPRIEVSPYAPRITTLKINPEKIRDLIGKGGATIRAITEET 593
Query: 646 GGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I +S DG + + + + +E++ + E+EVG IY+G + + ++GAFV
Sbjct: 594 GTLIDISDDGMVRISTSDSQACQNAIERIRKVTA-EVEVGCIYEGAIVKLTDFGAFVNVL 652
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G+ GL+H+S++S E V +VSDV+S GQ + ++ + D +G I+L++K + E +V
Sbjct: 653 PGRDGLVHISQISKERVEQVSDVLSEGQIVKVKVLEIDRQGRIRLTMKDIEVEMENEV 710
>gi|347757869|ref|YP_004865431.1| S1 RNA binding domain-containing protein [Micavibrio
aeruginosavorus ARL-13]
gi|347590387|gb|AEP09429.1| S1 RNA binding domain protein [Micavibrio aeruginosavorus ARL-13]
Length = 715
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 300/713 (42%), Positives = 447/713 (62%), Gaps = 33/713 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ +++EFE+G + + LETGKIAR A+GAV+ M T VL TV ++ S+R DF P
Sbjct: 1 MFNIYRKEFELGGKKVVLETGKIARQADGAVMATMGGTTVLCTVVGAR--SLREGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
L+V YQEK +A G IP + +REG P E+E+LV R+IDRP+RPLFP GF +EVQV+A+V+
Sbjct: 59 LSVHYQEKAYAAGKIPGGFFKREGRPSEKEVLVSRLIDRPVRPLFPEGFLNEVQVIATVV 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
+ D + DPDI+A SAAL +S IP+ GPIG R+G + GQ+++NPT+ E + S L+LV
Sbjct: 119 AHDMENDPDIVAMIGVSAALTISGIPFMGPIGAARVGYVNGQYVLNPTLSERTNSVLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK------QKKE 285
A T E LM++ +A+E+SE+ + + ++ I LAE K Q +
Sbjct: 179 VAGTAEGVLMVESEAQELSEEVMLGAVMFGWNSFQTVIKNIIGLAEMCAKEPWDVPQARP 238
Query: 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-- 343
+ M + + L++A++E + +++E +G+ K+A+EE EE
Sbjct: 239 EVVEMTKAMKAKFEAPLSKAYLEPI----KQTRYEL------VGELKKQAVEEFVSEEKN 288
Query: 344 -SLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
S + + A T+ V+R RI+ EG+R+DGR +RPI E G LP HGS+LF+RG+
Sbjct: 289 LSKETVAAAFKTLEADVVRGRILKEGMRIDGRDTKTIRPIVAEVGVLPRAHGSALFTRGE 348
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L TLG + Q +++L G +RFMLHY+FPP+ + E G+ RRE+GHG LA
Sbjct: 349 TQALVVTTLGTGQDEQIMDALEGEYKQRFMLHYNFPPYSVGEAGRMSSPGRREIGHGKLA 408
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
+A+ +LP +FPYTVR SE+ S+GS+SMA+VCG S+A+MDAG+PL +AG+++G
Sbjct: 409 WRAINPLLPKAEEFPYTVRNVSEITESNGSSSMASVCGSSLAMMDAGVPLARPIAGIAMG 468
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
L+ E + D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+
Sbjct: 469 LIKEGN-------DFAVLSDILGDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMT 521
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
++ A +GRL IL M + +++ RT+ +P++ TL + +R +IG G + R+I
Sbjct: 522 IAVKQAREGRLHILGEMAKALTSARTEMSEYAPQIVTLTVPKEKIREVIGTGGKVIREIV 581
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
E+TG +I + DGT+ V A + +E+ + + I + EVG IY G V ++GAFV
Sbjct: 582 EKTGTKIDIEDDGTIKVAASDAKAIEEAVRIIRGIT-DDPEVGAIYDGKVVKTTDFGAFV 640
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
F G+ GL+H+SEL+ + V+ +DVV G + + IG D RG IKLS+K V
Sbjct: 641 NFMPGKDGLVHISELASQRVAATTDVVKEGDMVKVLLIGFDDRGKIKLSMKRV 693
>gi|400756528|ref|NP_952644.4| polynucleotide phosphorylase/polyadenylase [Geobacter
sulfurreducens PCA]
gi|409912114|ref|YP_006890579.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
gi|399107839|gb|AAR34967.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
PCA]
Length = 740
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/729 (42%), Positives = 440/729 (60%), Gaps = 23/729 (3%)
Query: 34 LGFAPCEPAPPTPAPSVAG------TKVLETFKEEFEIGSRLITLETGKIARFANGAVVL 87
+ F+ PT S AG + K E G R IT+ TGK A+ A+GAVV+
Sbjct: 16 IAFSVAPSTAPTHLFSQAGRPMNMMEHTMTEHKVNVEFGGRTITIATGKWAKQASGAVVV 75
Query: 88 GMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGR 146
+T VL T ++K +DF PLTV+YQEK +A G IP + +REG P + E L R
Sbjct: 76 SCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKIPGGFFKREGRPSDNETLTSR 135
Query: 147 IIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIR 206
IDRPIRPLFP F ++ Q+MA+V+S+D DP I+A SAAL +SDIP+ GPI ++
Sbjct: 136 FIDRPIRPLFPESFLNDTQIMATVVSADQDNDPGILAMIGASAALEVSDIPFLGPIAGVK 195
Query: 207 IGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAV 266
+GR+ GQF+ NPT+++L SDL +V A +R+ +M++ A E SEKD+ + H
Sbjct: 196 VGRVDGQFVCNPTVEQLEKSDLEIVVAASRDAVIMVEGGAAEASEKDVLEAIFFGHAAVQ 255
Query: 267 KYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI-EAVFTDPSYSKFERGEAL 325
+E Q L + AG K+E + + E +V +LA A I EAV +K ER +
Sbjct: 256 PIIEAQTDLRKLAGVPKREVAATSVDEALKTRVKDLAYAGIKEAVRI---VAKQERHNRI 312
Query: 326 DKI-GQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYC 384
+I Q ++ L E ES + + ++R+ II +G R+DGR +RPI
Sbjct: 313 GEITAQTLETLLPEYEGRES--EIKGFLGDFEYELVREHIIKDGYRIDGRDTTTIRPISI 370
Query: 385 ESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINE 444
E LP HGS+LF+RG+TQ L TLG + QR++SL G KRF+LHY+FPPF + E
Sbjct: 371 EVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRKRFLLHYNFPPFSVGE 430
Query: 445 VGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMA 504
R+ RRE+GHG LAE+AL V+P DFPYT+R+ S+++ S+GS+SMATVCGG++A
Sbjct: 431 TSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIRIVSDILESNGSSSMATVCGGALA 490
Query: 505 LMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGV 564
+MDAG+P++ VAG+++GL+ E GE IL+DILG EDHLGDMDFK+AGT GV
Sbjct: 491 MMDAGVPIKAPVAGIAMGLIKE-----GE--GIAILSDILGDEDHLGDMDFKVAGTEAGV 543
Query: 565 TAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDN 624
TAIQ+DIK G+ +I+ + L A GRL IL M + I+APRT +PR+ T+
Sbjct: 544 TAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAAPRTDLSPYAPRITTIWVKT 603
Query: 625 DTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEV 683
D +R +IG G R I E TG I + D G + + + ++ +K ++ + + E E
Sbjct: 604 DKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKEACDKAIKMIRDLTA-EAEE 662
Query: 684 GGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV 743
G +Y G V V ++GAFVE G GL+H+SEL E V V+DV++ G ++ ++CIG D
Sbjct: 663 GKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLNEGDKVLVKCIGIDK 722
Query: 744 RGNIKLSLK 752
+G IKLS K
Sbjct: 723 QGKIKLSRK 731
>gi|397163478|ref|ZP_10486941.1| polyribonucleotide nucleotidyltransferase [Enterobacter
radicincitans DSM 16656]
gi|396094944|gb|EJI92491.1| polyribonucleotide nucleotidyltransferase [Enterobacter
radicincitans DSM 16656]
Length = 711
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 442/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKASKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLTAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DAEKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILSVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|429770179|ref|ZP_19302257.1| polyribonucleotide nucleotidyltransferase [Brevundimonas diminuta
470-4]
gi|429185335|gb|EKY26318.1| polyribonucleotide nucleotidyltransferase [Brevundimonas diminuta
470-4]
Length = 742
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/714 (42%), Positives = 444/714 (62%), Gaps = 27/714 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E R +TLETG+IAR A+GAV+ ET VL+TV + DF PLTV+YQE
Sbjct: 6 RKTIEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRQPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP Y +REG P E+E LV R+IDRPIRPLF GF +E QV+ +VL D + D
Sbjct: 66 KTFAAGKIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVKGFKNETQVIVTVLQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ A SAAL +S +P+ GPIG R+G I G+ ++NP +D++ S L+LV A T++
Sbjct: 126 PDILGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPAIDQMGESALDLVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E+SE+ + L AH ++ I LAE A K+ +++ S+ +
Sbjct: 186 LMMVESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAKEPFDFQAEDHSD-VVAS 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR-- 356
+ +L I+A + P K+ER +D + +AL + DE+ P+ VD+ +
Sbjct: 245 IKSLVGEDIKAAYAHPG--KYERRSGVDAAKKKAAEALVK-TDEK-----PEGVDSSKFS 296
Query: 357 -------KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
V+R+ II RVDGR LD+VR I E G LP HGSSLF+RG+TQ L
Sbjct: 297 AAFKECEADVLRRDIIENSHRVDGRALDKVRAIVSEVGVLPRTHGSSLFTRGETQALVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +
Sbjct: 357 TLGTGEDEQYIDSLTGTYKESFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP DFPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL V+G+++GL+ E P
Sbjct: 417 LPSREDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPLARPVSGIAMGLILE--P 474
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
S ++ IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A
Sbjct: 475 S----GEFAILSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITKEIMQQALTQAS 530
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GRL ILD M + + APR + +P++ ++K D +R +IG G + R+I E+TG ++
Sbjct: 531 AGRLHILDEMSKAMEAPRAELGEFAPKIESIKIAVDKIREVIGSGGKVIREIVEKTGAKV 590
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A + +E + I E EVG IY G V V ++GAFV F G +
Sbjct: 591 DIGDDGTIKIAANEQEKIEAAKAWIQS-IASEPEVGTIYSGKVVKVVDFGAFVNFFGAKD 649
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
GL+HVS+++ E V+ +DV+S GQ++ ++ +G D RG KLS+K V D+
Sbjct: 650 GLVHVSQIALERVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQETGEDI 703
>gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli]
Length = 711
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/705 (42%), Positives = 446/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TL +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLRTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+A MDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|409439767|ref|ZP_11266806.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium mesoamericanum
STM3625]
gi|408748604|emb|CCM77987.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium mesoamericanum
STM3625]
Length = 716
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/704 (42%), Positives = 441/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHSVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E+ + + H L+ I+LAE A K+ ++++ SE
Sbjct: 181 GTHDAVLMVESEAKELNEEVMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + + EA + + + K ER A+D + VK EE + + + +
Sbjct: 241 LESEMLKHF-EAELRTAYKNTQ--KAERYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 SAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAKGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RAHILGEMAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGQKVWVKLLGFDERGKVRLSMKVV 693
>gi|398384359|ref|ZP_10542391.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. AP49]
gi|397722831|gb|EJK83363.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. AP49]
Length = 770
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 439/703 (62%), Gaps = 23/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K E+G + +TLETG+IAR A+ AV+ ET VL VT++K SV+ DF PLTV Y
Sbjct: 6 KVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+A VLS DG
Sbjct: 64 QEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSFDGD 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G++ +NP++DE+ +L+LV A T
Sbjct: 124 SEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATG 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A+E+SE + + AH + K + I+LAEKA K E
Sbjct: 184 NAVMMVESEAKELSEDVMLGAVLFAHEASKKVADAIIQLAEKAAKDPWEIAKGDDLGALK 243
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVD 353
K+ +L I A + TD S R AL++ K + + D +++ K
Sbjct: 244 TKLKDLIGGDIAAAYKLTDKS----ARSNALNEARAKAKASFAADGLDAQTVMAGIKLTK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R I+ +G R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 300 KLEAEIVRTAILKDGARIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +
Sbjct: 360 KDAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTK 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 420 DEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG------ 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR
Sbjct: 474 -SDFAVISDILGDEDHLGDMDFKVAGTENGITTMQMDIKVAGITQEIFETALRQAKEGRA 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 533 HILGEMNKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDD 592
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
V+ + S ++++ +I+G E EVG +Y G V ++ ++GAFV F GG+ GL+
Sbjct: 593 E--GVIKISSSDIDQIEAAKKWILGIVEEAEVGKVYTGKVVNIVDFGAFVNFMGGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 651 HVSEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|387129542|ref|YP_006292432.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM7]
gi|386270831|gb|AFJ01745.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM7]
Length = 699
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/708 (41%), Positives = 435/708 (61%), Gaps = 12/708 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
+ + K+ + G L++LETGKIAR A GAV+ + ET VL TV K + +DF PLTV
Sbjct: 1 MNSVKKTVQFGEHLLSLETGKIARQAGGAVMASLGETAVLVTVVGKKNVNPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ +A G IP + +REG P E+E L R+IDRP+RPLFP GF +EVQV+A+V++ D
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFINEVQVIATVVAID 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
DPDI A SAAL +S IP+ GP+G R+G I GQ+++NP+ +L+ S+L+LV A
Sbjct: 121 PAIDPDIPAMIGASAALAISGIPFNGPLGAARVGYINGQYVLNPSKSQLTESELDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A+E+ E+ + + H + + L ++ K E++ ++
Sbjct: 181 TETAVLMVESEAQELPEEVMLGSVMFGHQQMQSAINLVRDLQQEVSKAAWEWQAEAKDDR 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
V A A I +T K R + L ++ Q AL E E + + +
Sbjct: 241 LYNAVKEAAYAGIGQAYT--VSDKLLRQDQLAEVRQTAVDALVSEDGEWNEEEVKAIFGK 298
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++R RIIA R+DGR VRP++ E+ LP +HGS+LF+RG+TQ + TLGA
Sbjct: 299 LEKELVRGRIIAGEPRIDGRDTKTVRPVFVETSVLPRVHGSALFTRGETQAIVVATLGAE 358
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ ++++ G RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P
Sbjct: 359 RDAQMIDAVEGEYRDRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPTAE 418
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL+ E D
Sbjct: 419 AFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEPDA----- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y ++TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A GRL
Sbjct: 474 --YAVITDILGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRLH 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M IS R + ++PR+ T K D +R +IG GA R I EETG I + D
Sbjct: 532 ILDKMNAVISTHRQEMSEHAPRIITTKVHADKIRDVIGKGGATIRAITEETGATIDIQDD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ + + + + + L +++ I ++EVG IY+G V + ++GAFV G+ GL+H+
Sbjct: 592 GTVMIFSSDYNAGQDALHRIEQITA-DVEVGKIYQGRVAKLMDFGAFVTILPGKDGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
S++S+E V VSD +S G + ++ + D +G I+LS+KAV A+
Sbjct: 651 SQISNERVENVSDKLSEGDMIEVKVLEVDRQGRIRLSMKAVHDDASAE 698
>gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC
49814]
gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC
49814]
Length = 709
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/695 (43%), Positives = 442/695 (63%), Gaps = 22/695 (3%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVI 126
R +TLETG+IAR A+GAV+ ET VL+TV ++K + DF PLTV+YQEK +A G I
Sbjct: 14 RPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLTVNYQEKYYAAGRI 73
Query: 127 PNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANA 186
P + +RE P E+E L R+IDRPIRPLF GF +E QV+ +VLS D + DPD++A A
Sbjct: 74 PGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSYDMENDPDVVAMVA 133
Query: 187 TSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQA 246
SAAL +S +P+ GPIG R+G G++I+NPT+D+++ + L+LV A T++ +M++ +A
Sbjct: 134 ASAALTVSGVPFMGPIGAARVGYKDGEYIINPTLDQMADTQLDLVVAGTQDAVMMVESEA 193
Query: 247 REISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAH 306
+E+SE+ + + H ++ I LAE++ K+ +++ S + L K+ L A
Sbjct: 194 KELSEEVMLGAVMAGHESFQTVIDGIIDLAERSAKEPWDFQPEDKSAE-LAKLEELVGAD 252
Query: 307 IEAVFTDPSYSKFERGEALDKIGQDVKKA-----LEEECDEESLQVLPKAV-DTVRKRVI 360
I A +Y E+ E +G+ +KA + EE E + K + ++ +V+
Sbjct: 253 ISA-----AYKIKEKAERYAAVGEAREKAAAQLVVSEENPEGWSEAFFKGIFKSLEAKVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R II GVR+DGR LD+VRPI E LP HGS+LF+RG+TQ +C TLG + Q +
Sbjct: 308 RGDIIKTGVRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGTGEDEQFI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G FMLHY+FPP+ + EVG+ G RRE+GHG LA +AL AVLP DFPYT+
Sbjct: 368 DGLEGTSKSNFMLHYNFPPYSVGEVGRMGGAGRREIGHGKLAWRALKAVLPSNEDFPYTL 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SE+ S+GS+SMATVCG S+A+MDAG+P+ V+G+++GL+ + D +L
Sbjct: 428 RLVSEITESNGSSSMATVCGSSLAMMDAGVPITRPVSGIAMGLIKDED-------GIAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR ILD M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGLTSLQMDIKIAGITKEIMQTALEQAKGGRAHILDEMN 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ + R N+PR+ T+ D +R +IG G + R+I EETG ++SV DGT+ +
Sbjct: 541 KALDGSRDDVSGNAPRIVTMSIPTDKIRDVIGTGGKVIRQIVEETGAKVSVEDDGTVKIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A ++ ++ + + + E EVG IY+G V V ++GAFV F G + GL+H+S+L+ E
Sbjct: 601 AVDKESIDAAYKWIHGLTA-EPEVGEIYEGKVVKVMDFGAFVNFFGAKDGLVHISQLAEE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V + SDVV GQ + ++ +G D RG ++LS+K V
Sbjct: 660 RVKQTSDVVKEGQTVWVKLLGFDDRGKVRLSMKVV 694
>gi|350265984|ref|YP_004877291.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598871|gb|AEP86659.1| Polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 705
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/689 (42%), Positives = 440/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QFI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E L I E+ EKV LAE +
Sbjct: 195 EVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIALYEIDEELSEKVKALAEKDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNTVVAKFEDEEHDEDTIKQVKQILSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAQKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|345300967|ref|YP_004830325.1| polyribonucleotide nucleotidyltransferase [Enterobacter asburiae
LF7a]
gi|345094904|gb|AEN66540.1| Polyribonucleotide nucleotidyltransferase [Enterobacter asburiae
LF7a]
Length = 712
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDEALDANELSEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|341614812|ref|ZP_08701681.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium sp.
JLT1363]
Length = 774
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 447/702 (63%), Gaps = 25/702 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 IEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +REG E+E L R+IDRP+RPLFP GFY+E+ V+ VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD---LNLVYACTR 236
DI+A A SAAL +S +P+ GPIG R+G G++ +NP++ + +L + L+LV A T+
Sbjct: 127 DIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSL-QTALDEEGRLDLVVAATQ 185
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ +A+E++E+++ + AH E+ K + I LAE+A K+ E S +
Sbjct: 186 DAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIDLAEQAAKEPWELASSDDNADMK 245
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVD 353
+ ++ I + TD S +R +AL+ + VK+ EE D + K V
Sbjct: 246 AYIKDMVGEDIAKAYKLTDKS----QRSDALNTARERVKEHYSGEEFDGQQKMTAIKLVK 301
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R I+ +G R+DGR+LD+VRPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 302 KIESEIVRGAILKDGQRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGT 361
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
Q ++ L G FMLHY+FPP+ + EVG+ +RRE GHG LA +AL VLP
Sbjct: 362 KDAEQMIDGLEGLSYNHFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPSH 421
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
DFPYT+R+ S++ S+GS+SMATVCGG +++MDAG+P++ V+G+++GL+ E D
Sbjct: 422 EDFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGD----- 476
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ LE A GR
Sbjct: 477 --EFAVLSDILGDEDHLGDMDFKVAGSENGITSLQMDIKVAGITQEIMKTALEQAKAGRA 534
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + + + R+ +++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 535 HILGEMTKALGSARSGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDD 594
Query: 654 -GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
G + + + N +E + ++ I+ E EVG IY G V ++ ++GAFV F GG+ GL+H
Sbjct: 595 EGVIKISSSNADEIEAARKWIEGIV-EEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVH 653
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
VSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 654 VSEMKNERVEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVV 695
>gi|338980127|ref|ZP_08631436.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium sp. PM]
gi|338208961|gb|EGO96771.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium sp. PM]
Length = 716
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/711 (43%), Positives = 440/711 (61%), Gaps = 23/711 (3%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVD 115
F++E + G R + LETGK+AR A+GAVV +T VL+TV ++ SV+ DF PLTV+
Sbjct: 6 FRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGAR--SVKPGQDFFPLTVN 63
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
YQEK +A G IP + +REG P ERE L R+IDRPIRPLFP GF +EVQV+ +VLS D
Sbjct: 64 YQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSHDL 123
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
+ +PDI++ A SAAL LS IP+ GP+G RIG I G++I+NPT +++ S L+LV A T
Sbjct: 124 ENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVLAGT 183
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
E LM++ +A E+SE+ + + H ++ I LAE A K E+
Sbjct: 184 EEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDEEKA 243
Query: 296 LE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE--ECDEESLQVLPKAV 352
L +V LA + A +Y++ E+ +KIG VK A+ E +E S++
Sbjct: 244 LAARVDELAREGLRA-----AYAEREKTARHEKIGA-VKAAVLETLAAEERSVEKAKGMF 297
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 298 KELEADIVRNAILDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLG 357
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++++ G +RF+LHY+FPPF + E G+ RREVGHG LA +A+ +LP
Sbjct: 358 TAQDEQIVDAIEGEYRERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPG 417
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 418 KDKFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIK------- 470
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E K + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK I +I+ L+ A GR
Sbjct: 471 EDKGFAVLSDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGR 530
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M + ++ R N+PR+ + D +R +IG G + R+I E +G +I +
Sbjct: 531 LHILGEMSKALTGAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCKIDIE 590
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A + +K ++++ + E EVG IY G V + ++GAFV F G + GL+
Sbjct: 591 DDGTIKIAATSDEQAQKAIDRIRSLTS-EPEVGQIYTGKVVKIADFGAFVNFFGARDGLV 649
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
H+SEL+ V+R DVV VG + ++ IG D RG +KLS++ V AD+
Sbjct: 650 HISELAQGRVARTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVVDQATGADI 700
>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
radiotolerans JCM 2831]
gi|226702663|sp|B1LZQ1.1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
radiotolerans JCM 2831]
Length = 739
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 305/708 (43%), Positives = 446/708 (62%), Gaps = 17/708 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK+AR A+GAV+ ET VL+TV ++K DF+PLTV+YQE
Sbjct: 6 REELMWGDRKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKPGIDFMPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL+ D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNLVYACTRE 237
PDI+A A SAAL LS +P+ GPIG R+G I G + +NP + E S L+LV A T++
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDLVVAGTQD 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+SE + + H +E IRLAEKA K+ +++K +E
Sbjct: 186 AVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFKAP--ENADVE 243
Query: 298 K-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDTV 355
K V + EA + A +T K ER A+D + V AL E E+ + + A
Sbjct: 244 KAVLEVCEAELRAAYT--KTVKQERYAAVDAVKAKVMAALCPEGAEKFPAEKVKAAFKEA 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+ +V+R I+ G R+DGR + VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 QSKVVRWNILDSGARIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E GE
Sbjct: 422 FPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----GE-- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A GR I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTDEGVTSLQMDIKIAGITEEIMKIALAQAKDGRAHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M + ++A R + +PR+ T++ D +R +IG G + R+I E+TG +I++ D G
Sbjct: 535 LAEMAKALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDTG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + ++ + I+ E EVG IY G + E+GAFV F G + GL+H+S
Sbjct: 595 VVKIASADGKAIKAAYNWIRSIVA-EPEVGVIYDGTIVKCMEFGAFVNFFGAKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
EL+ + V++V DVV G ++ ++ +GQD RG I+LS+K V + D+
Sbjct: 654 ELAAQRVAKVQDVVKEGDKVKVKFLGQDDRGKIRLSMKVVDQQTGEDI 701
>gi|304310511|ref|YP_003810109.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HdN1]
gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HdN1]
Length = 701
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/701 (42%), Positives = 429/701 (61%), Gaps = 13/701 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ K+EF G + TLETGKIAR A GAV++ + VL TV K D +DF PLT
Sbjct: 1 MFNVVKKEFRFGDQTYTLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E L R+IDRP+RPLFP GF +EVQ++A+VLS+
Sbjct: 61 VNYQEKTYASGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLST 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D K DPDI A SAAL +S IP+ GPIG R+G + G +++NP L S L+LV A
Sbjct: 121 DKKTDPDIAALVGASAALAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H E +E A++ G + E++ +
Sbjct: 181 GTDQAVLMVESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEVGTPRWEWQAEEENV 240
Query: 294 QTLEKVSNLAEAHIEAVFT-DPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
++ + EA + +T +++E+ A+ Q V E E + + + + +
Sbjct: 241 GLKARIRDGYEAQLRQAYTITEKQARYEQVGAIK--AQAVSDLAVEGQSEITKEEVSRLL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ V+R I++ R+DGR VRPI E GNL HGS+LF+RG+TQ + T TLG
Sbjct: 299 GDLEYYVVRDNILSAHPRIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ ++Q ++ L G ++ FMLHY+FPPFC+ E G ++G RRE+GHG LA + + AVLP
Sbjct: 359 SMRDSQTVDYLEGARSEPFMLHYNFPPFCVGETGGQLGPKRREIGHGRLARRGIQAVLPE 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ FPY +RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E D
Sbjct: 419 NSAFPYAIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGD---- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A GR
Sbjct: 475 ---RFAVLTDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIDGITEEIMEVALNQARDGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M + I A R R++P T K D D +R +IG GA R+I EET I +
Sbjct: 532 LHILGEMAKVIEASRPALSRDAPVYLTTKIDPDKIRDVIGKGGATIRQICEETSATIDIE 591
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + +N + L +V I E E+G IY G V + ++GAFV F GQ GL+
Sbjct: 592 DTGVVRIYGENGGSADAALARV-LAITTEPEIGQIYTGKVARIVDFGAFVTFMPGQDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
H+S+++ E V++V+D + GQ++ ++ + D RG +KLS+K
Sbjct: 651 HISQIAEERVAKVTDYLQEGQEVQVKVLDIDNRGRVKLSIK 691
>gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
subvibrioides ATCC 15264]
gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
subvibrioides ATCC 15264]
Length = 764
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/717 (42%), Positives = 446/717 (62%), Gaps = 11/717 (1%)
Query: 41 PAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS 100
P P A + + ++ + R +TLETG+IAR A+GAV+ ET VL+TV
Sbjct: 3 PRPEYAARDTKDENMFDIKRKTIDWAGRPLTLETGRIARQADGAVLATYGETIVLATVVY 62
Query: 101 SKGDSV-RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAG 159
+ DF PLTV+YQEK FA G IP Y +REG P E+E LV R+IDRPIRPLF G
Sbjct: 63 GRAPKPGLDFFPLTVNYQEKTFAAGKIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVKG 122
Query: 160 FYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219
F +E QV+ +VL D + DPDI+ ATSAAL LS +P+ GPIG R+G I G+F++NPT
Sbjct: 123 FKNETQVVITVLQHDLENDPDIVGMVATSAALTLSGVPFMGPIGAARVGYIDGEFVLNPT 182
Query: 220 MDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA 279
+D++ S L+LV A T + +M++ +A+E+SE+ + L AH ++ I +AE A
Sbjct: 183 LDQMPDSQLDLVVAGTSDALMMVESEAKELSEQVMLDALMFAHRGMQPVIDAIIEMAEHA 242
Query: 280 GKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPS-YSKFERGEALDKIGQDVKKALEE 338
K +++ S + ++ +L I+A +T P +++ E A K +E
Sbjct: 243 AKDPFDFQAEDHS-GVVTQIQSLVGEDIKAAYTHPGKHARHEAVGAAKKKASAALVKTDE 301
Query: 339 ECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLF 398
D A V+R+ II RVDGR LD+VR I E G P HGS+LF
Sbjct: 302 NPDGVDSAKFGVAWKECEAHVLRRDIIDNAHRVDGRALDKVRDIVSEVGIFPRTHGSALF 361
Query: 399 SRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGH 458
+RG+TQ + TLG + Q ++SL G ++F+LHY+FPP+ + E G+ G RRE+GH
Sbjct: 362 TRGETQAIVVATLGTGEDEQYVDSLAGTYKEKFLLHYNFPPYSVGETGRMGGAGRREIGH 421
Query: 459 GTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAG 518
G LA +A+ +LP +FPYT+R+ SE+ S+GS+SMA+VCG S+ALMDAG+PL++ V+G
Sbjct: 422 GKLAWRAIRPMLPTSEEFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPLKKPVSG 481
Query: 519 VSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPL 578
+++GL+ E PS GE + IL+DILG EDHLGDMDFK+AGTR G+T++Q+DIK AGI
Sbjct: 482 IAMGLILE--PS-GE---FAILSDILGDEDHLGDMDFKVAGTRDGITSLQMDIKVAGITE 535
Query: 579 DIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALK 638
+I+ + + A GRL ILD M++ I RT+ +P++ ++K D +R +IG G +
Sbjct: 536 EIMKKAIAQASAGRLHILDEMDKAIDGARTELGEYAPKIESIKVPVDKIRDIIGTGGKII 595
Query: 639 RKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEY 697
R+I E+TG +I++ DGT+ + A ++ ++ + I+ E E G IY G V V ++
Sbjct: 596 REIVEKTGAKINIEDDGTVKIAASDQEKIDAAKNWISSIVS-EPEPGMIYSGKVVKVVDF 654
Query: 698 GAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GAFV F G + GL+HVS+++ E V+ +DV+S GQ++ ++ +G D RG KLS+K V
Sbjct: 655 GAFVNFFGAKDGLVHVSQIALERVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVV 711
>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
S110]
gi|259534173|sp|C5CT24.1|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
S110]
Length = 772
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/698 (41%), Positives = 440/698 (63%), Gaps = 12/698 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G + + +ETG+IAR A+GAVV+ +D T +L+TV +SK +DF PLTVDY EK +
Sbjct: 11 FQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GF +EV V+ LS + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL +S IP+ GPIG R+G I GQ+++NP S ++LV A T LM
Sbjct: 131 AAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + G+ H +A + L AGK +++ E + KV +
Sbjct: 191 VESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAEDEAFVAKVKS 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE + AV+ SK R +AL + V L+E + + + + +++R
Sbjct: 251 LAEEKLRAVYQ--IRSKQARTQALREANASVMNTLKESGEPFDAGKVNDLLFAIESKIVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+I++ R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR++
Sbjct: 309 SQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTERDAQRID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL+AVLP + +FPYT+R
Sbjct: 369 ALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEEFPYTIR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +LT
Sbjct: 429 VVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------RFAVLT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVA 660
+ +T+ + +PRL TLK + + +R +IG GA+ R ++EETG I++ DGT+T+ +
Sbjct: 542 AMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ E ++++ I E+E+G +Y+G VT + ++GA + G+ GLLH+S+++HE
Sbjct: 602 TDPEKAEFAKKRIEQITA-EVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V +V+D +S GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERP 698
>gi|440229154|ref|YP_007342947.1| polyribonucleotide nucleotidyltransferase [Serratia marcescens
FGI94]
gi|440050859|gb|AGB80762.1| polyribonucleotide nucleotidyltransferase [Serratia marcescens
FGI94]
Length = 706
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/693 (41%), Positives = 441/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDHFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G + Q+++NPT+DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYVNDQYVLNPTVDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + ++ L + GK K +++ + ++E +V+
Sbjct: 188 MVESEAEVLSEDQMLGAVVFGHEQQQVVIDNINSLVAEVGKPKWDWQPTPVNEALQARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA++ + + K +R +D I +DV AL E+ + + A+ + K V+
Sbjct: 248 ELAQSRLGDAYQ--ITEKQDRYAQVDAIKEDVTAALLEQDETLDAADIQDALSDLEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNL 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFPYTV
Sbjct: 366 DELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR + +PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QAISTPRGDISQFAPRIHTMKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGEKAKYAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|424864741|ref|ZP_18288644.1| polyribonucleotide nucleotidyltransferase [SAR86 cluster bacterium
SAR86B]
gi|400759487|gb|EJP73669.1| polyribonucleotide nucleotidyltransferase [SAR86 cluster bacterium
SAR86B]
Length = 698
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/698 (43%), Positives = 444/698 (63%), Gaps = 21/698 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
EF G + + +ETGK+AR A AV+ +D+ VL+TV + K D +DF PL V YQEK
Sbjct: 12 EFNYGGKKVKIETGKVARQATAAVITTIDDLVVLTTVVAKKEADPSKDFFPLAVFYQEKF 71
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +RE P ERE L R+IDRPIRPLFP F +EVQV +VLSS + +PD
Sbjct: 72 YATGRIPGGFFKREARPTERETLTSRLIDRPIRPLFPETFTNEVQVFCTVLSSGKEYNPD 131
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I A SAA+ +S +P+ GP+G R+G I G ++VNP+ EL S L++V A T + L
Sbjct: 132 IAAMIGASAAMTISGVPFDGPMGAARVGFIDGNYVVNPSFKELEDSYLDMVVAGTEQAVL 191
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E + + AH E ++ L EK G++ E ++ E T
Sbjct: 192 MVESEAKELNEDLMLGAVLFAHKEMQVVIDACKELNEKVGQEPWEV---LVDEDTPRYFG 248
Query: 301 NLAEAHIEAVFTDPSYS-KFERGEALDKIGQDVKKALEEECDEESLQV--LPKAVDTVRK 357
L E + EA+ + S K ERGEA++ + + +K EE D + LQ + A + K
Sbjct: 249 ELKEKYSEAITNAFTISNKSERGEAINAVRESIK---EEYVDLDELQQGKVFGAFKKLEK 305
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R I+ R+DGR LD VRPI E+G LP HGS+LF+RG+TQ + TLG+ +A
Sbjct: 306 EIVRNNILTNKPRIDGRDLDTVRPIEVETGILPSPHGSALFTRGETQAVVVATLGSSRDA 365
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR+ES+ G + FMLHY+FP + + E+G +G RRE+GHG LA++A+ VLP ++F
Sbjct: 366 QRIESIEGESSDHFMLHYNFPAYSVGEIGMPMGPKRREIGHGNLAKRAIKPVLPDLDEFG 425
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE+ S+GS+SMA+VCG S++LMDAG+PL E VAG+++GL+ E D ++
Sbjct: 426 YTLRVVSEITESNGSSSMASVCGTSLSLMDAGVPLTEPVAGIAMGLIKEED-------NF 478
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDILG EDHLGDMDFK+AG++ G+TA+Q+DIK GI +I+ L A R+ IL+
Sbjct: 479 AVLTDILGDEDHLGDMDFKVAGSKNGITALQMDIKIQGINEEIMEVALSKAKNARMHILN 538
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTL 656
M IS P+ + N+P + T + D ++ +IG GA+ + ++EETG + +S DGT+
Sbjct: 539 IMNETISKPKEMSE-NAPAMKTFMVEKDKIKEIIGKGGAVIKSMQEETGATVDISDDGTV 597
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+V A+ +S M+ LE ++ I E E+ IYKG V + ++GAFV G+ GLLH+SE+
Sbjct: 598 SVFAQTQSAMQACLEIIE-SIIEEPELNKIYKGTVVKIVDFGAFVNILPGKDGLLHISEI 656
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
S+E V V+ V+ GQ++ ++ +G D RG +KLS KA+
Sbjct: 657 SNERVEDVASVLEEGQEIEVKLVGFD-RGKMKLSAKAL 693
>gi|357007995|ref|ZP_09072994.1| Pnp [Paenibacillus elgii B69]
Length = 700
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/696 (42%), Positives = 438/696 (62%), Gaps = 13/696 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
+ ++G R + LETG++A+ ANGAVV ET VL TVT+S DF PLTV+Y+E+ +
Sbjct: 6 QMDLGGRPLILETGRLAKQANGAVVARYGETVVLCTVTASAEPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP +++REG P E+ +L R+ DRPIRPLFP GF ++VQ++A V+S D + P+I
Sbjct: 66 SVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQIVAIVMSVDQECAPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GP+G + +GR+ GQF++NPT+++ SD++LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPVGGVIVGRVDGQFVINPTLEQSEKSDIHLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A E+ E+ + + H E K + Q + ++ GK K E KL + + V
Sbjct: 186 VEAGAEEVPEEVMLEAIMFGHDEIRKIVAVQEQFVQEVGKPKMEVKLHSVDSDVNQAVRE 245
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKRV 359
A+A + P K R +A+D I + K+ E E + + +A+ + K
Sbjct: 246 FAQARLVEAVKIP--EKHARQDAIDAINSEAKEHFAAAYAETPEKMADVKEALYDIVKEE 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ I + VR DGR LDE+RPI C+ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 304 VRRLITHDKVRPDGRGLDEIRPIECDINLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L +KRFM HY+FPPF + E RRE+GHG L E+AL V+P E DFPYT
Sbjct: 364 LDGLDLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALEPVIPSEVDFPYT 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + GE Y I
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKD-----GEY--YSI 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK GI I+ + LE A KGR+ IL+ M
Sbjct: 477 LTDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGIDRAILTDALEQAKKGRMHILNKM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
IS P++ +P++ T++ + D +R +IG G + KI EETG +I + DG + +
Sbjct: 537 LDRISQPKSDLSPYAPKIVTMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ N + EK + ++ I+ RE+ VG Y G V ++++GAFVE G++GL+H+S+LS
Sbjct: 597 ASSNSEMNEKARQIIEGIV-REVIVGETYLGTVKRIEKFGAFVEILPGKEGLVHISQLST 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V +V DVV +G ++++ D +G + LS KAV
Sbjct: 656 ERVGKVEDVVKIGDTITVKVTEIDNQGRVNLSRKAV 691
>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
Length = 723
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/708 (42%), Positives = 438/708 (61%), Gaps = 19/708 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAV+ ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 13 EIDWGGRPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGV-DFLPLTVDYQEK 71
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 72 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDP 131
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A A SAAL LS +P+ GPIG R+G + ++++NPT+DE+ + L LV A T +
Sbjct: 132 DVLAMVAASAALTLSGVPFKGPIGAARVGFMNDEYVLNPTLDEMVDTRLELVVAGTADAV 191
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E+SE + + H + I LAEKA K+ +E ++ I LEK
Sbjct: 192 LMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VAAIDNSALEKE 249
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTVR 356
+ L E + A + P K +R A+ K + V E E L + +
Sbjct: 250 MLALIEQDLRAAYAIPV--KQDRYAAVGKAKEKVLAHYFPEGAEPKYDKLRVAEVFKELE 307
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR + VR I E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 308 AKIVRWNILDTGKRIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGED 367
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 368 EQYIDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 427
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 428 PYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG-------SR 480
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
Y +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR+ IL
Sbjct: 481 YAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIAGITEEIMKVALAQAKDGRIHIL 540
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 541 GEMAKALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 600
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + M+ ++ + I + EVG +Y+G V V E+GAFV F G + GL+H+S+
Sbjct: 601 VKVASNDGEAMKAAIKWIKS-IASDPEVGQVYEGTVVKVMEFGAFVNFFGAKDGLVHISQ 659
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
L+ V + SDVV G ++ ++ +G D RG +LS+K V D++
Sbjct: 660 LAVGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDIE 707
>gi|403745562|ref|ZP_10954357.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121280|gb|EJY55594.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 704
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/696 (42%), Positives = 434/696 (62%), Gaps = 12/696 (1%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
+ EFE+G R LETGK+A+ A AV + ET VL+TVT+SK DF PLTV+Y+E+
Sbjct: 4 RHEFEVGGRRFILETGKLAKQATAAVNVQYGETVVLATVTASKEPKDLDFFPLTVNYEER 63
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E+ +L R+IDRPIRPLFP GF ++VQV+ V+S D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNDVQVVDIVMSVDQDCAP 123
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
+I A TSA+L +SDIP+ GPIG + +G + G+F++NPT+ + SDL+LV A T++
Sbjct: 124 EIAAMIGTSASLTISDIPFNGPIGGVIVGLVDGEFVINPTVAQAEKSDLHLVLAGTKDAI 183
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
+M++ A E+ E + + H + + + AEK G K+E +L + + + V
Sbjct: 184 VMVEAGANEVPEDTVLEAVLFGHKVIGQICDEILAFAEKVGVVKREVQLHQVDPELNQAV 243
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
A + +P K R EAL + ++V+ E E ++ D +++ V
Sbjct: 244 RQYATERVNIAVRNP--DKLAREEALSNLNEEVQAHFAEAFPEREAEIAEIMHDILKEEV 301
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
R+ I+ EG+R DGR+LDE+RPI CE G LP HGS+LF+RG TQ L TLGA + Q
Sbjct: 302 -RRAILQEGIRPDGRKLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGAMGDEQM 360
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L + R+M HY+FPPF + E +RR++GHG L E+AL V+P +FPY
Sbjct: 361 LDGLEVEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYA 420
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+RV SE++ S+GSTS A++CG +MALMDAG+P++ VAG+++GLV E D I
Sbjct: 421 IRVVSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGD-------QVAI 473
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK +GI I+ L+ AH GR+ IL M
Sbjct: 474 LTDIQGIEDHLGDMDFKVAGTAKGVTALQMDIKISGIDRHILERALQQAHDGRMFILGKM 533
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
+ I+ PR+ + +PR+ T++ + D +R +IGP G + KI EETG +I + DG + +
Sbjct: 534 MQAIAQPRSDLSKFAPRVITVRINPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVFI 593
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ + +K + + I+ RE+EVG Y G VT V++YGAFVE G++GL+H+S+L
Sbjct: 594 HSMDGGQADKARDMIQNIV-REVEVGATYVGKVTRVEKYGAFVEILPGKEGLVHISQLDI 652
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V++V DV VG ++++ D +G I LS K V
Sbjct: 653 NRVAKVEDVCQVGDPITVKVTEIDNQGRINLSRKEV 688
>gi|387926989|ref|ZP_10129668.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
PB1]
gi|387589133|gb|EIJ81453.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
PB1]
Length = 703
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/689 (43%), Positives = 445/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ ET VLST T+S DF PLTV+Y+E+ +A G IP
Sbjct: 15 RNLTVEIGQLAKQANGAVLVRYGETVVLSTATASNEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+FI+NP + ++ SD++LV A T++ M++ A
Sbjct: 135 SLALCISDIPFEGPIAGVTVGRVGGKFIINPDVQQMEQSDMHLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + +E Q ++A + GK+K E L + ++ +V + EA +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIELQEKIAAEIGKEKMEVVLFELDKELEAEVRAMCEADM 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
P K R EA++++ D+ K E+E DE++L+ + + +D + K +R+ I
Sbjct: 255 IKAIQVPE--KQAREEAINEVKNDILAKYEEQEADEDTLKQIKQILDNIVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E +R DGR++DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKIRPDGRKVDEIRPLSSEIGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E +FPYTVR+ SEV
Sbjct: 373 EEKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKEFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D +Y ILTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGD-------NYTILTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E ++ A KGR+QILD M + IS P
Sbjct: 486 EDHLGDMDFKVAGTPKGVTALQMDIKIEGLSREILEEAMQQAKKGRMQILDSMLKTISKP 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R Q + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + N +
Sbjct: 546 REQLSKYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSINEEM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKTIIEDIV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVVS+G ++ ++ D +G + LS KAV
Sbjct: 665 DVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisB5]
gi|123749482|sp|Q13EM2.1|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisB5]
Length = 722
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/699 (43%), Positives = 440/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGK+AR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A+SAAL LS P+ GPIG R+G I ++++NP +DE+ + L+LV A T +
Sbjct: 127 DILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLDLVVAGTSDAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E+SE+ + + H ++ I LAEKA K+ +E L++I + +EK
Sbjct: 187 LMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKEPRE--LTVIDDSAIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ L E + A + K ER A+ K+ + E E L A +
Sbjct: 245 MLGLVEQELRAAYA--IAVKQERYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I E+G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE--R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALGQAKDGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + + R + ++PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + ++ ++ + I + EVG IY+G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGESIKAAIKWIKS-IASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 655 LAAGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|402819996|ref|ZP_10869563.1| hypothetical protein IMCC14465_07970 [alpha proteobacterium
IMCC14465]
gi|402510739|gb|EJW21001.1| hypothetical protein IMCC14465_07970 [alpha proteobacterium
IMCC14465]
Length = 718
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/710 (42%), Positives = 445/710 (62%), Gaps = 18/710 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
+EE + G R + LETG+IAR A+GAV+ +T VL+TV + + S DF PLTV+YQE
Sbjct: 6 REEIDWGGRPLILETGRIARQADGAVLATYGDTTVLATVVADRSPKSGIDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF GF +E QV+A+VLS D + D
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVIATVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
DI+A A SAAL +S +P+ GPIG R+G G++I+NPT++E+ S+L+LV A T +
Sbjct: 126 SDIVAMVAVSAALTISGVPFLGPIGAARVGFANGEYILNPTLEEMKDSNLDLVVAGTGDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ QA E+SE+ + + H E + I LAEK K+ ++ + + EK
Sbjct: 186 VLMVESQAGELSEEVMLGAVMHGHREFQPVINAIISLAEKCAKEPRDVPENN-DDALKEK 244
Query: 299 VSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
V+ +A +E+ + D S + + A DK+ D+ L + D ++ L A +
Sbjct: 245 VAGIARGDLESAYQEADKSARQEKIAAAKDKVMADL---LPADADADTAITLSGAFKGLE 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R I+ R+DGR L +VRPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 302 SDIVRGGILDTEKRIDGRGLADVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGDD 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLN-RREVGHGTLAEKALLAVLPPEND 475
Q +++L G + FMLHY+FPP+ + E G RVG RRE+GHG LA +A+ +LP D
Sbjct: 362 EQLVDALEGTYKENFMLHYNFPPYSVGETG-RVGFTGRREIGHGKLAWRAIKPMLPTAED 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PLQ+ VAG+++GL+ E D
Sbjct: 421 FPYTLRLVSEITESNGSSSMATVCGASLAMMDAGVPLQKPVAGIAMGLIKEGDR------ 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ L A GR I
Sbjct: 475 -FAVLSDILGDEDHLGDMDFKVAGTQDGITSLQMDIKITGITEEIMQVALTQAKGGREHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
L M + RT+ +P++ T+K D +R +IG G + R+I E TG +I +S DG
Sbjct: 534 LGEMASALGEARTEMGEYAPKIETIKIAQDKIREVIGSGGKVIREIVETTGAKIDISDDG 593
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + +V++ +E ++ I E EVG IY+G V ++GAFV F G + GL+H+S
Sbjct: 594 TIKVASSDAAVIQAAIEWINS-IAAEPEVGVIYEGTVVKTMDFGAFVNFFGKRDGLVHIS 652
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+L+ V +D+V G + ++ +G D RG ++LS+K V D++G
Sbjct: 653 QLADRRVENTTDIVKEGDTVKVKLMGFDDRGKVRLSMKVVDQETGEDLEG 702
>gi|381167889|ref|ZP_09877094.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Phaeospirillum molischianum DSM
120]
gi|380682965|emb|CCG41906.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Phaeospirillum molischianum DSM
120]
Length = 719
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/715 (42%), Positives = 436/715 (60%), Gaps = 13/715 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ ++E G R + LETGK+AR A+GAV+ ET VL TV K DF PLT
Sbjct: 3 LFNVHRKELIWGGRKLILETGKVARQADGAVLATYGETTVLCTVVGVKTQKPGIDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VLS
Sbjct: 63 VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVDGFRNEVQVVCTVLSH 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ TSAAL LS +P+ GP+G R+G I GQ+++NP DEL S L+LV A
Sbjct: 123 DLENDPDIVSLVGTSAALTLSGLPFMGPVGAARVGYIDGQYVLNPKADELPKSALDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A+++SE+ + + H E ++ I LAE A K+ ++L+
Sbjct: 183 GTSEGVLMVESEAQQLSEEIMLGAVTFGHTEFQPVIKAIIELAELAAKEP--WELAPPPA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ S A I A + +Y ++ + +G K ALE + L V P +
Sbjct: 241 EIALVRSKFEAAGIPAALAE-AYKIVKKQDRYAAVGAVKKSALEALTEAAELAVAPGILK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ V+R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 300 DLESEVVRGNILNTGIRIDGRDTKTVRPIEVEVGVLPRAHGSALFTRGETQALVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ LP +
Sbjct: 360 GQDEQIIDALSGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPTLPTK 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+RV SE+ S+GS+SMATVCG S+ALMD+G+PL VAG+++GL+ E GE
Sbjct: 420 ESFPYTIRVVSEITESNGSSSMATVCGSSLALMDSGVPLPRPVAGIAMGLIKE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+ L+ A GR+
Sbjct: 475 --SFAVLSDILGDEDHLGDMDFKVAGTEDGVTALQMDIKITSITQEIMKIALDQAKDGRI 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + + + R N+PR+ T+ + +R +IG G + R+I E+TG +I +
Sbjct: 533 HILGEMNKGLDSARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDD 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ V + + ++ ++ + I+ E E+G IY G V V ++GAFV F G + GL+H
Sbjct: 593 DGTIKVASVDADAAQRAIDWIRGIVA-EPELGVIYTGKVVKVVDFGAFVNFLGSRDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVE 767
+SELS E VS+V+DV+ G + ++ +G D RG +KLS+K V D+ +E
Sbjct: 652 ISELSRERVSKVADVIKQGDVVKVKVLGFDDRGKVKLSMKQVDQATGEDISAQIE 706
>gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
insecticola LSR1]
gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
insecticola LSR1]
Length = 698
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +T+ETG +AR AN AV++ +D+T V TV K ++F PLT
Sbjct: 1 MLNPIVHKFQYGQHTVTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKPGQNFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRPIRPLFPAGF +EVQ++A+V+S
Sbjct: 61 VNYQERSYAAGRIPGNFFRREGRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSI 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LSDIP+ GPIG R+G I Q+I+NPT EL S L+LV A
Sbjct: 121 NKEVNPDIVAMIGASAALSLSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE+ + + H + + L EKAGK K ++ +++
Sbjct: 181 GTNAAVLMVESEAKMLSEEQMLGAVSFGHEQQQIVINNINELVEKAGKAKWDWCPEEVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ VS LAEA + + K ER ++ I D+ + L ++ + + + +
Sbjct: 241 KLYTTVSELAEAPLGDAYC--IAEKQERYAKINVIKADITQTLLDKNEILNAAEVQDILS 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
K+++R+R++ R+D R D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 YTEKKLVRRRVLECKPRIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ALLAV+P
Sbjct: 359 ARDAQSLDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVMPSL 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+D PYTVR+ SE+ S+GS+SMA+VCG S+ALMDAG+P++EHVAG+++GLV E D
Sbjct: 419 DDCPYTVRIVSEITESNGSSSMASVCGASLALMDAGVPIKEHVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI I+ + L A
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSRTGITALQMDIKIEGITEKIMEKALHQAKSALS 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
ILD ME I PR+ + +PR+ T+K + D ++ +IG GA+ R + EET I +
Sbjct: 532 HILDIMEEAIKKPRSDISQYAPRIHTIKINPDKIKDVIGKGGAVIRALTEETRTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A++ EK++ + I I + E G IY G VT + ++GAFV GG++GL
Sbjct: 592 DGTIKIAAEDN---EKIIYAIRRIQEITVDPEPGKIYLGKVTRITDFGAFVSCVGGREGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + + + D + +GQ++ ++ I D +G I+LS+K
Sbjct: 649 VHISQIAEKRIENIPDHLHIGQEVQVKIIEIDRQGRIRLSMK 690
>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
Length = 747
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/707 (41%), Positives = 445/707 (62%), Gaps = 14/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+ G + + +ETG+IAR A GAV++ +D+T VL+TV +SK + +DF PLT
Sbjct: 3 IFNKITKSFQWGDKTVIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF+++V V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A ATSAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L +AGK ++K E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREAGKPVWDWKAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAV 352
+ KV+ LAE + A + +K R A + V L+E E +S++V
Sbjct: 243 SLIAKVTALAEDKLRAAYQ--IRNKQARTHACREAYAVVMADLKEAGVEFDSVKVEGMLF 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
D + R++R +I+A R+DGR VRPI S LP HGSSLF+RG+TQ L TLG
Sbjct: 301 D-IEARIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQR+++L G RFMLHY+ PPF EVG+ RRE+GHG LA++AL AVLP
Sbjct: 360 TERDAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPT 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ +FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 420 KEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDN---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R
Sbjct: 476 ---RFAVLTDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEAR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
+ IL M+ + + + +P+L T+K + + +R +IG GA+ R + EETG +I++
Sbjct: 533 IHILGKMQDAMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIE 592
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+T+ A + + ++ +++ I E+E+G +Y+G VT + ++GA + G+ GLL
Sbjct: 593 EDGTITIAATDAAKADEAKRRIEQITA-EVEIGKVYEGPVTKILDFGALINLLPGKDGLL 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
H+S+++HE V +VSD ++ GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 652 HISQIAHERVEKVSDYLTEGQIVKVKVMETDEKGRVKLSMKALAERP 698
>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
Length = 716
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/725 (41%), Positives = 449/725 (61%), Gaps = 19/725 (2%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSV 106
P + +L +F+ G +T+ETG +AR A AV++ MD+T V TV K
Sbjct: 4 PLIKDIILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG 63
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+ F PLTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV
Sbjct: 64 QSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQV 123
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLS 226
+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL +S
Sbjct: 124 IATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKIS 183
Query: 227 DLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY 286
L+LV A T LM++ +A +SE + + H + +E L +AGK K ++
Sbjct: 184 SLDLVVAGTAGAVLMVESEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAEAGKPKWDW 243
Query: 287 KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEE 343
+ +++ +V+ LAEA + + K ER +D I V + L +E D
Sbjct: 244 QAPVVNAALHARVAELAEARLGDAYH--ITEKQERYAQVDAIKDSVVETLLVQDETLDAS 301
Query: 344 SLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDT 403
+Q + + +V K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+T
Sbjct: 302 EIQDI---LSSVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGET 358
Query: 404 QVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAE 463
Q L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA+
Sbjct: 359 QALVTATLGTARDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAK 418
Query: 464 KALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGL 523
+ +LA++P DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL
Sbjct: 419 RGVLAMMPKLEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 478
Query: 524 VSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICE 583
V E D ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+
Sbjct: 479 VKEAD-------NFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQV 531
Query: 584 CLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEE 643
L A RL IL ME+ IS PR + +PR+ T++ D ++ +IG G++ R + E
Sbjct: 532 ALNQAKGARLHILSVMEQAISVPRGDISQFAPRIHTIRISPDKIKDVIGKGGSVIRALTE 591
Query: 644 ETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVE 702
ET I + DGT+ + A + + +++ I EIEVG IY+G VT + ++GAFV
Sbjct: 592 ETDTTIEIDDDGTVKIAATGGEKAKFAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVA 650
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K + PEA+
Sbjct: 651 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAT-MPEAES 709
Query: 763 KGVVE 767
VE
Sbjct: 710 PPAVE 714
>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
halophila SL1]
gi|187610274|sp|A1WXU7.1|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
SL1]
Length = 702
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 450/705 (63%), Gaps = 19/705 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
L K F+ G +TLETG +AR A+GAV++ M +T VL TV K + RDFLPLTV
Sbjct: 8 LTPVKRSFQFGQHQVTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAARDFLPLTV 67
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ +A G IP + +REG P E+E L R+IDRPIRPLFP GF EVQV+A+VLS +
Sbjct: 68 NYQERTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLN 127
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ D DI A TSAAL LS IP+ GPIG R+G + G+F++NPT + + SDL+LV A
Sbjct: 128 DEVDADIPAMIGTSAALALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESDLDLVVAG 187
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T++ LM++ +A + E + + H + ++ LA +AGK + +++ +E
Sbjct: 188 TQDAVLMVESEANLLPESTMLDAVLYGHEQMQVAIDTINDLAAEAGKPRWDWQPPAKNES 247
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE----SLQVLPK 350
V+ L + +EA +Y ++ E +++G KA+E DEE + +
Sbjct: 248 LDSAVAELVRSDLEA-----AYQIADKQERSERVGALRDKAVEALADEEREGWGAGDVGE 302
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A T+ K+++R RI+A R+DGR VRP+ ++G LP HGS++F+RG+TQ + T
Sbjct: 303 AFKTLEKKIVRGRILAGHPRIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVST 362
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ +++L G + FMLHY+FPP+C+ E G RRE+GHG LA++ + AV+
Sbjct: 363 LGTGRDAQVIDALEGERREPFMLHYNFPPYCVGETGFIGTPKRREIGHGKLAKRGVEAVM 422
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + +FPY +RV SEV S+GS+SMATVCG S++LMDAG+PL+ VAG+++GL+ E D
Sbjct: 423 PSDEEFPYVIRVVSEVTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGD-- 480
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
++ +LTDILG EDHLGDMDFK+AG++ GVTA+Q+DIK GI +I+ + L+ A
Sbjct: 481 -----EFAVLTDILGDEDHLGDMDFKVAGSKDGVTALQMDIKIDGITREIMEQALDQARS 535
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL+ M + I PR Q +PRL T++ D + +R +IG GA R + EETG I
Sbjct: 536 GRLHILEQMNQVIDKPREQMSEYAPRLLTMRIDPERIRDVIGKGGATIRGLTEETGTNID 595
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+SD G +T+ + +++ E+ ++++ + ++EVG +Y G V + ++GAFV G+ G
Sbjct: 596 ISDEGVVTIASADKAAAEEAKKRIELLTA-DVEVGKVYDGKVAKLMDFGAFVNILPGRDG 654
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S++S+ V V+D +S G + ++ + D +G I+LS+KAV
Sbjct: 655 LVHISQISNNRVENVADELSEGDSVRVKVLEVDRQGRIRLSMKAV 699
>gi|415830688|ref|ZP_11516556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1357]
gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1357]
Length = 696
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/690 (42%), Positives = 441/690 (63%), Gaps = 22/690 (3%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPN 128
+TLETG +AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP
Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A S
Sbjct: 61 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIE 308
+SE + + H + ++ L ++AGK + +++ ++E +V+ LAEA +
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 240
Query: 309 AVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKR 363
+ TD K ER +D I + L +E DE L + A++ K V+R R
Sbjct: 241 DAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSR 293
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L
Sbjct: 294 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 353
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV
Sbjct: 354 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVV 413
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y +L+DI
Sbjct: 414 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDI 466
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
LG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I
Sbjct: 467 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 526
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKN 662
+APR +PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A +
Sbjct: 527 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 586
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
+ + +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ + V
Sbjct: 587 GEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 645
Query: 723 RVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 675
>gi|226702687|sp|B8CKH8.1|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans
WP3]
Length = 701
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/691 (42%), Positives = 441/691 (63%), Gaps = 12/691 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GP+G+ R+G G++++NP + +L S+L+LV A T LM
Sbjct: 128 ISMIGTSAALAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELDLVVAGTEGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + G+ H + + L +A K ++ + ++ + K+ +
Sbjct: 188 VESEAASLPEEVMLGGVVYGHEQQQVVINAISELKAEASKPAWDWTAPVQDQELVAKIKD 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + I K+AL E E L+ + + ++ K+V+R
Sbjct: 248 LAEAGLTEAYQ--IEVKQDRYTQVGVIKSAAKEALLAENPEADLREIDGLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ+++
Sbjct: 306 SRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVD 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI DI+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ TLK + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 539 AIGSHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG +Y G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 599 SNGEATKEAIRRIEEITA-EVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSL 751
V+ VSD + VGQ++ ++ + D +G ++LS+
Sbjct: 658 VANVSDYLEVGQEVKVKVMEVDRQGRVRLSM 688
>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
Length = 702
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/702 (43%), Positives = 439/702 (62%), Gaps = 17/702 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLT 113
+E FK E I R +ETGK+A+ ANGAV+ +T VL T T+SK + V DFLPLT
Sbjct: 1 MEVFKTE--IAGRPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGV-DFLPLT 57
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY+E+ +A G IP +++REG P E+ +L R+IDRP+RPLFP GF +++Q++A++LS
Sbjct: 58 VDYEERLYAVGKIPGGFIKREGKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSV 117
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D PD++A N S AL +SDIP+ GP+G + +G + G FI+NPT+++ S L LV A
Sbjct: 118 DQGNTPDVVAINGASIALCISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSRLRLVVA 177
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ A E++E+++ + H E K ++ Q + K GK K E + I
Sbjct: 178 GTKDAILMVEAGADEVTEEEMINAILFGHEEIKKIVKFQEEIIAKVGKPKMEVPVMEIDP 237
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ + V A I Y K ER L KI +D ++ E+ ++ + +
Sbjct: 238 ELEKAVREYARDEILKAIR--IYDKQEREAYLQKINEDTLLHFQDIYPEKEKEI-AEVLY 294
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K +R I EG+R DGR+ E+RPI CE G LP HGS LF+RG TQVL TLGA
Sbjct: 295 SILKEEVRNMITYEGIRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGA 354
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q L+ L +KRFM HY+FPP+ E G RRE+GHG LAE+AL ++PPE
Sbjct: 355 LGDVQILDGLELEESKRFMHHYNFPPYSTGETRMLRGPGRREIGHGALAERALEPMIPPE 414
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+R+ SEV++S+GSTSMA+VCG ++ALMDAG+P++ VAG+++GL+ + D T
Sbjct: 415 ETFPYTIRLVSEVLSSNGSTSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKVT-- 472
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
IL+DI G+ED LGDMDFK+AGT G+TAIQ+DIK GI +I+ + LE A +GRL
Sbjct: 473 -----ILSDIQGIEDFLGDMDFKVAGTSKGITAIQMDIKIKGIDAEILKKALEQAREGRL 527
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL+ M IS+PR + +PR+ T D D +R +IGP G + KI ETG +I +
Sbjct: 528 YILEKMLATISSPRPELSPYAPRIFTTVIDPDKIREVIGPGGKMINKIIAETGVKIDIED 587
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG + + A N + EK L+ + I +++EVG +Y G V + +GAFVE G++GL+H
Sbjct: 588 DGRIYIAAPNEAAGEKALDMIKNIT-QDVEVGKVYLGKVLRITNFGAFVEILPGKEGLVH 646
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+L+ V +V DVV +G ++ ++ D +G I LS K V
Sbjct: 647 ISKLAKGRVKKVEDVVKIGDEILVKVTDIDKQGRINLSHKDV 688
>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
Length = 709
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 439/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I Q ++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 712
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 442/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAAND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAEA + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKDETIATLVAEDETLDANELSEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|407692428|ref|YP_006817217.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus suis
H91-0380]
gi|407388485|gb|AFU18978.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus suis
H91-0380]
Length = 713
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/697 (41%), Positives = 439/697 (62%), Gaps = 12/697 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT+ E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++ GK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKETGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + V
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTAQDETISEGAIVDIITALESSV 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+A R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKIVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
E V RV+D +SVGQ+++++ + D + I+L++K ++
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMKDIN 692
>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
HI4320]
gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|425070182|ref|ZP_18473296.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW6]
gi|226702677|sp|B4F2C3.1|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
HI4320]
gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|404595698|gb|EKA96234.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW6]
Length = 709
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/697 (42%), Positives = 452/697 (64%), Gaps = 20/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD T V TV + K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLTVNYQERS 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +E+QV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS +P+ GPIG R+G I GQ+++NPT+DEL +S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L + GK+K ++ I++ ++++
Sbjct: 188 MVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQSLHDRIA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDE-ESLQVLPKAVDTVR 356
LA+ I + K ER E +D I +V L +E DE E +++ +
Sbjct: 248 QLAQTRIGDAYR--ITEKQERYEQIDAIRDEVISTLLAEDESLDEGEIIEIFSG----LE 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
K+++R R++A R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +
Sbjct: 302 KKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARD 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ ++G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P +F
Sbjct: 362 AQTIDDIMGEHTDTFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEEF 421
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++E VAG+++GLV E GE +
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKE-----GE--N 474
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AG+R GV+A+Q+DIK GI +I+ L A RL IL
Sbjct: 475 FVVLSDILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHIL 534
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME IS PR + +PR+ T+K + D ++ +IG G++ R + EETG I + DGT
Sbjct: 535 GVMESAISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + ++ + +++ I E+EVG IY G VT + ++GAFV GG++GL+H+S+
Sbjct: 595 VKIAATSGEQAKQAIARIEEITA-EVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQ 653
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
++ + V +VSD +++GQ++ ++ + D +G I+LS+K
Sbjct: 654 IADKRVEKVSDYLTMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|401676929|ref|ZP_10808910.1| polyribonucleotide nucleotidyltransferase [Enterobacter sp. SST3]
gi|400215838|gb|EJO46743.1| polyribonucleotide nucleotidyltransferase [Enterobacter sp. SST3]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEAAND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I +V L E + + +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSEVTATLVAEDETLDANEIGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRVYAGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum
JF-5]
gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
AIU301]
gi|187470957|sp|A5FVG2.1|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum
JF-5]
gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
AIU301]
Length = 717
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/711 (43%), Positives = 440/711 (61%), Gaps = 23/711 (3%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVD 115
F++E + G R + LETGK+AR A+GAVV +T VL+TV ++ SV+ DF PLTV+
Sbjct: 7 FRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGAR--SVKPGQDFFPLTVN 64
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
YQEK +A G IP + +REG P ERE L R+IDRPIRPLFP GF +EVQV+ +VLS D
Sbjct: 65 YQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSHDL 124
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
+ +PDI++ A SAAL LS IP+ GP+G RIG I G++I+NPT +++ S L+LV A T
Sbjct: 125 ENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVLAGT 184
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
E LM++ +A E+SE+ + + H ++ I LAE A K E+
Sbjct: 185 EEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDEEKA 244
Query: 296 LE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE--ECDEESLQVLPKAV 352
L +V LA + A +Y++ E+ +KIG VK A+ E +E S++
Sbjct: 245 LAARVDELAREGLRA-----AYAEREKTARHEKIGA-VKAAVLETLAAEERSVEKAKGMF 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 299 KELEADIVRNAILDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++++ G +RF+LHY+FPPF + E G+ RREVGHG LA +A+ +LP
Sbjct: 359 TAQDEQIVDAIEGEYRERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPG 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 419 KDKFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIK------- 471
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E K + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK I +I+ L+ A GR
Sbjct: 472 EDKGFAVLSDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M + ++ R N+PR+ + D +R +IG G + R+I E +G +I +
Sbjct: 532 LHILGEMSKALTGAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A + +K ++++ + E EVG IY G V + ++GAFV F G + GL+
Sbjct: 592 DDGTIKIAATSDEQAQKAIDRIRSLTS-EPEVGQIYTGKVVKIADFGAFVNFFGARDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
H+SEL+ V+R DVV VG + ++ IG D RG +KLS++ V AD+
Sbjct: 651 HISELAQGRVARTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVVDQATGADI 701
>gi|421729364|ref|ZP_16168501.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca
M5al]
gi|410369906|gb|EKP24650.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca
M5al]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDAIKSETIATLVAEDESLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|365847658|ref|ZP_09388142.1| polyribonucleotide nucleotidyltransferase [Yokenella regensburgei
ATCC 43003]
gi|364571909|gb|EHM49479.1| polyribonucleotide nucleotidyltransferase [Yokenella regensburgei
ATCC 43003]
Length = 730
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/711 (41%), Positives = 446/711 (62%), Gaps = 16/711 (2%)
Query: 46 PAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GD 104
P V +L +F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 11 PLNYVKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVNMDDTAVFVTVVGQKKAK 70
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 71 PGQDFFPLTVNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 130
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL
Sbjct: 131 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTKEELV 190
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 191 SSKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRW 250
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ ++ +V+ LAE+ + + TD K ER +D I +V L E +
Sbjct: 251 DWQPEVVDAALNARVAALAESRLSDAYRITD----KQERYAQVDSIKSEVIATLVAEDEA 306
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 307 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 366
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ ++ ++G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 367 TQALVTATLGTARDAQIIDEIMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 426
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P ++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 427 KRGVLAVMPTADEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMG 486
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D ++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 487 LVKEGD-------NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQ 539
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R +
Sbjct: 540 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 599
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 600 EETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 658
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 659 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 709
>gi|350561994|ref|ZP_08930831.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780312|gb|EGZ34647.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 694
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 444/702 (63%), Gaps = 17/702 (2%)
Query: 58 TFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDY 116
++K+ F+ G++ +T ETG IAR A GAV++ + +T VL TV + K D RDF PLTV+Y
Sbjct: 2 SYKKTFQYGNQTVTFETGGIARQATGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVNY 61
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QE+ +A G IP + +REG P E+E L R+IDRP+RPLFP GF HE Q++A+V+S + +
Sbjct: 62 QERTYAAGKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFTHETQIVATVMSINPE 121
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
DPDI+A SAAL +S +P+ GPIG R+G GQ+++NPT EL S L+LV A T
Sbjct: 122 VDPDIVAMLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGTE 181
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A E+SE + + H + ++ LA AGK ++ +
Sbjct: 182 NAVIMVESEASELSEDVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPQTDDSVD 241
Query: 297 EKVSNLA-EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVD 353
+V+ +A A +EA ++ ER L+ + DV + L DE S + + A
Sbjct: 242 AQVAEVARNALVEAYQIAEKQARTER---LNSLRADVVERLAT-GDEGAPSAEAVKNAFH 297
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ R++R RI+ R+DGR VRPI ++G LP HGS++F+RG+TQ L TLG
Sbjct: 298 ELEYRIVRDRILDGNPRIDGRDTRSVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGT 357
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++++ G +RFMLHY+FPP+C E G RRE+GHG LA++ + AV+P +
Sbjct: 358 DRDAQVIDAIEGERRERFMLHYNFPPYCTGETGMVGSPKRREIGHGRLAKRGVQAVVPRD 417
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+ FPY +RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GL+ E D
Sbjct: 418 DSFPYVIRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEAD----- 472
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ + L+ A +GRL
Sbjct: 473 --RFAVLTDILGDEDHLGDMDFKVAGTRAGVTALQMDIKIDGITREIMEKALQQAREGRL 530
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS- 652
IL+ M IS+ RT+ +PR TL+ + + +R +IG GA R + EETG I +S
Sbjct: 531 HILERMGESISSHRTEMSSYAPRFITLRINPEKIRDVIGKGGATIRALTEETGTSIDISD 590
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG + + + +++ E+ +++ + ++EVG +Y G V + ++GAFV G+ GL+H
Sbjct: 591 DGVVKIASTDQAAGEEAKRRIEELTA-DVEVGRVYSGRVVKIMDFGAFVSILPGRDGLVH 649
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S++S+E V V+D ++ G ++++ + D +G I+LS+KAV
Sbjct: 650 ISQISNERVENVTDFLNEGDSVTVKVLEVDKQGRIRLSMKAV 691
>gi|336247349|ref|YP_004591059.1| polynucleotide phosphorylase/polyadenylase [Enterobacter aerogenes
KCTC 2190]
gi|444354538|ref|YP_007390682.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[Enterobacter aerogenes EA1509E]
gi|334733405|gb|AEG95780.1| polynucleotide phosphorylase/polyadenylase [Enterobacter aerogenes
KCTC 2190]
gi|443905368|emb|CCG33142.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[Enterobacter aerogenes EA1509E]
Length = 711
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIDEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|222084321|ref|YP_002542850.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
radiobacter K84]
gi|398377126|ref|ZP_10535304.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. AP16]
gi|254782699|sp|B9JGS9.1|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
radiobacter K84]
gi|397727145|gb|EJK87573.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. AP16]
Length = 710
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/697 (42%), Positives = 436/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ ATSAAL LS +P+ GPIG R+G I G++++NP +DE+ S L+LV A T+E L
Sbjct: 128 ILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTQEAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E+SE + + H ++ I+LAE A K+ ++++ S E +S
Sbjct: 188 MVESEAKELSEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQPEDHSALEAEMLS 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
+AE + + + K ER A+D + VK E E S +V+ ++ +
Sbjct: 248 -IAEGELRTAYKNTQ--KAERYAAVDAVKAKVKAHFFPEGVEPKYSAEVIGAVFKHLQAK 304
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ R+DGR L VR I E G LP HGSSLF+RG+TQ + TLG + Q
Sbjct: 305 IVRWNILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQ 364
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP FPY
Sbjct: 365 YVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAEQFPY 424
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E + +
Sbjct: 425 TLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDE-------RFA 477
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A GRL IL
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTDGGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGE 537
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M + IS R Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT+
Sbjct: 538 MAKAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVK 597
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H+S+L+
Sbjct: 598 IASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLA 656
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 657 SERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|398820450|ref|ZP_10578972.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
YR681]
gi|398228878|gb|EJN14978.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
YR681]
Length = 718
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/710 (42%), Positives = 440/710 (61%), Gaps = 21/710 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+A+VLS D + D
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A+SAAL LS P+ GPIG R+G + ++++NPT+DE+ + L+LV A T +
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E + + H + I LAEKA K+ +E +++I LEK
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTVIDNAALEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTV 355
+ L E + A + P K +R A+ K+ + V E E L +
Sbjct: 244 EMLGLVEQELRAAYAIPV--KQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIGAVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQGLVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E K
Sbjct: 422 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLIL-------EDK 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKDGRIHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMAKALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+L+ V + SDVV G ++ ++ +G D RG +LS+K V D++G
Sbjct: 654 QLASARVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDLEG 703
>gi|399064990|ref|ZP_10747698.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp.
AP12]
gi|398030195|gb|EJL23623.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp.
AP12]
Length = 776
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 300/708 (42%), Positives = 444/708 (62%), Gaps = 22/708 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR ANGAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 MEWGGKTLTLETGRIARQANGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+ G IP + +RE E+E L R+IDRPIRPLFP GFY+E+ V+A VLS DG +
Sbjct: 67 FSSAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVIAQVLSYDGDTEA 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMD-ELSLSDLNLVYACTREK 238
D++A A SAAL +S +P+ GPI R+G + G++ +NP D L L+LV A T +
Sbjct: 127 DVLAMIAASAALTISGVPFMGPIAAARVGYVDGEYTLNPKQDVALKEGSLDLVVAATGDA 186
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E++E+ + + AH E K + I LAEKA K+ E LS + K
Sbjct: 187 VMMVESEAKELTEEVMLGAVVYAHDEIKKVVNLIIDLAEKAAKEPWEVDLSDSTADIKAK 246
Query: 299 VSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
+ + + A + TD S R AL+ K+A +E + + V K++ V
Sbjct: 247 LKKVVGKDVAAAYKLTDKS----ARSNALNAARARAKEAFSDETPQTQM-VAIKSMKKVE 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R I+ +G R+DGR+LD+VRPI G LP HGSSLF+RG+TQ +CT TLG
Sbjct: 302 ADIVRGAILKDGKRIDGRKLDQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKES 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++ L G FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + DF
Sbjct: 362 EQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDF 421
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL V+G+++GL+ E KD
Sbjct: 422 PYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEG-------KD 474
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT +G+T +Q+DIK AGI +I+ + LE A GR IL
Sbjct: 475 FAVLSDILGDEDHLGDMDFKVAGTEVGITTMQMDIKIAGITREIMGKALEQAKAGRAHIL 534
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GT 655
M + + + R++ ++PR+ T++ D +R +IG G + R+I ETG ++ + D G
Sbjct: 535 GEMTKALGSSRSELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGV 594
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + + +E + + I+ E EVG +Y+G V ++ ++GAFV F GG+ GL+HVSE
Sbjct: 595 IKISSSDIAQIEAAKKWILGIV-EEAEVGKVYQGKVVNIVDFGAFVNFMGGKDGLVHVSE 653
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+ +E V + +DVV GQ + ++ + D RG ++LS++ V A+++
Sbjct: 654 MKNERVEKPTDVVKEGQAVYVKVLEIDPRGKVRLSMRVVDQETGAELE 701
>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Diplosphaera
colitermitum TAV2]
gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Diplosphaera
colitermitum TAV2]
Length = 747
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 300/711 (42%), Positives = 434/711 (61%), Gaps = 23/711 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
K+ E+ I TG +A+FANGAV + + ET V T++ +DF PLTVDY+E
Sbjct: 4 KKTVEVPGTNIKFTTGDMAKFANGAVTVSIGETNVFVAATAATTIKPGQDFFPLTVDYRE 63
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K A G P Y +REG P E+E+L R+ DRP RPLFP GF +EVQV+ +LS+D +
Sbjct: 64 KYSAAGRFPGGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQVVGLLLSADQLHE 123
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
DI N SAAL +SDIPW GPIG +R+ +I GQF+ NPT++++ S L+L+Y T +
Sbjct: 124 ADIAMVNGASAALAISDIPWAGPIGAVRVAQIDGQFVANPTIEQMFSSSLDLIYVGTEKD 183
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQT-- 295
LMI+ A +I E L AH +A++ + I+ LA K GK K ++ L +
Sbjct: 184 MLMIEGSADQIPEDRFVEALEFAH-QAIQPIIAAIKELAAKVGKPKAQFALVTAKPEARA 242
Query: 296 -LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKAV 352
+E+V +A EA+F + K RG ++ + + + AL+ E E + +
Sbjct: 243 IIERVVPIARVS-EAIF---GFEKQVRGANVNALKVEAEAALKAELGEGNYAPHDISIVF 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++ + R ++ G+R D R +RP+ E G LP +HGS+LF RGDTQ L T TLG
Sbjct: 299 EDLQYKAYRATVLERGLRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLG 358
Query: 413 APAEAQRLESLVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
EAQ ++ L G T K F+LHY+FPP+ + E G+ RRE+GHG LAE++L+ VLP
Sbjct: 359 PTKEAQDMDGLTGGATSKSFILHYNFPPYSVGETGRFGNPGRREIGHGALAERSLVPVLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
PE+ FPYT+R+ S++MAS+GSTSMA++CGG +ALMDAG+P+ VAG+S GL++ +
Sbjct: 419 PEDVFPYTIRLVSDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTS-NKDD 477
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
G I + +TDILG EDH GDMDFK+AGT G+T QLD+K G+P++I + A
Sbjct: 478 GSIDKWVTITDILGEEDHFGDMDFKLAGTTSGITGFQLDLKIKGLPIEIARTAIFQARDA 537
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R++IL M I APR +PR+ T++ D + + LIGP G R+I E TG +I +
Sbjct: 538 RVEILKAMLGAIPAPRKALSTYAPRIQTIQIDPEKIGLLIGPGGKTIRRIVETTGAQIDI 597
Query: 652 SD---GTLTVVAKNRSVMEKVLEKVDFIIGR-----EIEVGGIYKGVVTSVKEYGAFVEF 703
+D G + + + N M + + ++D + G +IEVG IY G V+ VKE+GAFVE
Sbjct: 598 ADDDSGKVFIYSNNADAMNRAISEIDGLCGGSGGGAQIEVGKIYTGRVSGVKEFGAFVEC 657
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKA 753
G++GL H+SEL+ V R DVV VG ++++CIG D R N ++LS +A
Sbjct: 658 LPGKEGLCHISELADFRVRRTEDVVKVGDSITVKCIGIDERSNKVRLSRRA 708
>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
Length = 742
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/707 (41%), Positives = 442/707 (62%), Gaps = 12/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+++ ++F+ G +TLETG IAR A AV+ MD+T V V + K +DF PLT
Sbjct: 33 IVDPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLT 92
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S
Sbjct: 93 VNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSV 152
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PD++A SAAL LS +P+ GPIG R+G I QF++NPT++E S L+LV A
Sbjct: 153 NPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVA 212
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A ++E+ + A + H + +E L +AGK + ++ +
Sbjct: 213 GTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNT 272
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV LAEA + + K R E +D I DV + E +E S +
Sbjct: 273 DLINKVKALAEARLGDAYR--ITEKQARYEQIDAIKADVVAQITAEDEEVSEGKIIDIFT 330
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG
Sbjct: 331 ALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGT 390
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P
Sbjct: 391 ERDAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTL 450
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 451 AEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDK---- 506
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+
Sbjct: 507 ---FVVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARM 563
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I +
Sbjct: 564 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 623
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A +++ ++ V+ +++ I E+E G IYKG VT + ++GAFV G ++GL+H
Sbjct: 624 DGTVKIAAVDKNAVQDVMARIEDITA-EVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVH 682
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+S+++ E V +VSD + VGQ++ ++ + D +G I+L++K ++P+ +
Sbjct: 683 ISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKQD 729
>gi|401765357|ref|YP_006580364.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|400176891|gb|AFP71740.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 444/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAAND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I +V L E + + +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSEVTATLVAEDETLDANEIGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
UT26S]
gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
UT26S]
Length = 771
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 300/703 (42%), Positives = 442/703 (62%), Gaps = 23/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K E+G + +TLETG+IAR A+ AV+ ET VL VT++K SV+ DF PLTV Y
Sbjct: 6 KVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK A G IP + +RE E+E LV R+IDRP+RPLFP GFY+E+ V+A VLS DG+
Sbjct: 64 QEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGE 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G++ +NP++DE+ +L+LV A T
Sbjct: 124 SEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATG 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A+E+SE + + AH + K + I LAEKA K + +
Sbjct: 184 NAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLDDLK 243
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKAV 352
+K+ L I A + TD S R A++ +D KA EE D +S+ K
Sbjct: 244 KKLKKLIGKDIAAAYKLTDKS----ARSSAINA-ARDKAKAFFAEEGLDAQSVMAGIKLT 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R I+ EG R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 299 KKLEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP
Sbjct: 359 TKDAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ +FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 419 KEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG----- 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
K++ +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR
Sbjct: 474 --KEFAVISDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ +
Sbjct: 532 AHILGEMSKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDID 591
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + + + +E + + I+ E EVG IY G V ++ ++GAFV F GG+ GL+
Sbjct: 592 DEGIIKISSSDINQIEAAKKWILGIV-EEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 651 HVSEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|384159348|ref|YP_005541421.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|384164217|ref|YP_005545596.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
gi|384168395|ref|YP_005549773.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens XH7]
gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
gi|341827674|gb|AEK88925.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens XH7]
Length = 707
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/689 (42%), Positives = 443/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI GQFI+NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I + EKV +LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSEKVKSLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++K+ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
Length = 705
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/689 (42%), Positives = 443/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI GQFI+NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I + EKV +LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSEKVKSLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++K+ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|407801051|ref|ZP_11147895.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax sp. W11-5]
gi|407024488|gb|EKE36231.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax sp. W11-5]
Length = 697
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/702 (42%), Positives = 430/702 (61%), Gaps = 14/702 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ T ++EF+ G + LETG+IAR A GAV++ + ET VL T K D + F PLT
Sbjct: 1 MFNTVRKEFQYGRDTVVLETGRIARQATGAVMVTIGETAVLVTAVGKKEADPNKGFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQ++A+V+S+
Sbjct: 61 VNYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQIIATVMSA 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D DPDI A TSAAL +S IP+ GP+G R+G I +++NP EL S L+LV A
Sbjct: 121 DKDADPDIAALLGTSAALAISGIPFAGPLGAARVGFINDMYVLNPRYSELKDSALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E++E + + H E ++ A +AGK + +++ + +
Sbjct: 181 GTEAAVLMVESEAKELTEDQMLGAVLFGHMEMQAAIKAIGEFAAEAGKPQWDWQPAATNT 240
Query: 294 QTLEKV-SNLAEAHIEAVFTDPSYSKFER-GEALDKIGQDVKKALEEECDEESLQVLPKA 351
E+V + A A EA ++ R G+ ++ + E D+ + L
Sbjct: 241 ALYEQVKARFAGAVAEAYTITDKQQRYTRLGDLKNEAVEAFATGEEGAPDKGEVSAL--- 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ K +R+ +++ R+DGR L+ VRPI E+G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FGKLEKATVREAVVSGKPRIDGRALNTVRPINIEAGGLPKAHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ +++L G RFMLHY+FPP+C+ E G RRE+GHG LA + + AVLP
Sbjct: 358 GGMRDAQLIDALEGSRQDRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLARRGVQAVLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
E +FPY +RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 418 NEQEFPYAIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLVKEEDGR- 476
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +G
Sbjct: 477 -----FAVLSDILGDEDHLGDMDFKVAGTEKGVTALQMDIKIQGITEEIMETALNQAREG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + IS PR + N+P L TLK + D +R +IG GA R + EE I +
Sbjct: 532 RLHILGEMNKVISKPRAELSANAPTLITLKINPDKIRDVIGKGGATIRALCEEFSANIDI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DG++ V A+ R + K++ I E EVG IY+G VT ++GAFVE G +GL
Sbjct: 592 EDDGSVKVYAETRDLAAAAAAKIEGITA-EPEVGEIYQGKVTRTVDFGAFVEIFPGTEGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
LH+S+++ E V +V+D V G + ++ + D RG IKLS+K
Sbjct: 651 LHISQIAQERVEKVTDYVKEGDVIKVKVLDVDQRGRIKLSMK 692
>gi|386399287|ref|ZP_10084065.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM1253]
gi|385739913|gb|EIG60109.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM1253]
Length = 717
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/722 (42%), Positives = 441/722 (61%), Gaps = 21/722 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + D
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A+SAAL LS P+ GPIG R+G +FI+NPT+DE+ + L+LV A T +
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E+ + + H + I LAEKA K+ +E ++ I LEK
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTTIDNSALEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTV 355
+ + E + A + P K +R A+ K+ + V E E L +
Sbjct: 244 EMLGMVEQELRAAYAIPV--KQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIGGVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E K
Sbjct: 422 FPYTTRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLIL-------EDK 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKDGRIYI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMSKALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASNDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNK 774
+L+ V + SDVV G ++ ++ +G D RG +LS+K V D++G E P +
Sbjct: 654 QLASARVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDLEGKGESQQPARE 713
Query: 775 QA 776
A
Sbjct: 714 AA 715
>gi|393758488|ref|ZP_10347309.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|393164907|gb|EJC64959.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 447/704 (63%), Gaps = 27/704 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLTVDYQEKQF 121
F+ G + LETG+IAR A+GAV++ +++T VL+TV +SK + +DF PLTVDY EK +
Sbjct: 9 FQYGEHTVVLETGEIARQASGAVLVSIEDTVVLATVVGASKAKAGQDFFPLTVDYVEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP + +REG ERE+L+ R+IDRP+RPLFP GFY+EVQV+ +S + + DPDI
Sbjct: 69 SAGKIPGGFFKREGRQSEREILISRLIDRPLRPLFPEGFYNEVQVIIHTVSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL +S IP+ GP+G R+G I GQ+++NP+ +L SDL+LV A T + LM
Sbjct: 129 AAMIGASAALAISGIPFNGPVGAARVGYIDGQYVLNPSATQLKSSDLDLVVAGTEQAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + G+ AH + + L E+AGK + +++ + ++E L VS
Sbjct: 189 VESEAKQLSEEVMLGGVVFAHEQMQAAINCIHELVEEAGKPEWDWQPAAVNESLLASVSA 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT------V 355
AE ++ + + K R E L + K+ + + E + Q P V +
Sbjct: 249 AAEEGLKQAYQ--TREKQARTEQLRAVYAHAKETVLAQA-EANGQEQPDMVAVENMLFDL 305
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R RI++ R+DGR VRPI G LP HGS+LF+RG+TQ L TLG
Sbjct: 306 ESKIVRSRILSGESRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVTTLGTKQ 365
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++S++G RFM+HY+ PPF E G+ RRE+GHG LA++AL +LP D
Sbjct: 366 DEQIIDSIMGEYRDRFMMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRALTPLLPAAED 425
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
F Y++RV SE+ S+GS+SMA+VCGGS+++MDAG+P+Q+HVAGV++GL+ E +
Sbjct: 426 FQYSIRVVSEITESNGSSSMASVCGGSLSMMDAGVPVQDHVAGVAMGLIKEGN------- 478
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L AH+GR+ I
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAHEGRMHI 538
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
L M+ I RT+ +PR+ T+K + + +R +IG GA R + EETG +I +S DG
Sbjct: 539 LGKMKESIDGSRTEMSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598
Query: 655 TLTVVA----KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
T+T+ + K R ++ E + E+EVG Y+G V + ++GA V+ G+ GL
Sbjct: 599 TITIASADLDKAREAERRIKE-----LTAEVEVGQEYEGPVMRLLDFGAIVQVLPGRDGL 653
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
LH+SE+++ ++ ++DV+ VGQ + ++ I D +G ++LS+KA+
Sbjct: 654 LHISEIANYRIANINDVLKVGQIVKVKIIEADEKGRLRLSIKAI 697
>gi|374571715|ref|ZP_09644811.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM471]
gi|374420036|gb|EHQ99568.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM471]
Length = 717
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/722 (42%), Positives = 441/722 (61%), Gaps = 21/722 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + D
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A+SAAL LS P+ GPIG R+G +FI+NPT+DE+ + L+LV A T +
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E+ + + H + I LAEKA K+ +E ++ I LEK
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTTIDNSALEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTV 355
+ + E + A + P K +R A+ K+ + V E E L +
Sbjct: 244 EMLGMVEQELRAAYAIPV--KQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIGGVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E K
Sbjct: 422 FPYTTRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLIL-------EDK 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKDGRIYI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMSKALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNK 774
+L+ V + SDVV G ++ ++ +G D RG +LS+K V D++G E P +
Sbjct: 654 QLASARVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDLEGKGESQQPARE 713
Query: 775 QA 776
A
Sbjct: 714 AA 715
>gi|404476988|ref|YP_006708419.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
B2904]
gi|434381233|ref|YP_006703016.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
WesB]
gi|404429882|emb|CCG55928.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
WesB]
gi|404438477|gb|AFR71671.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
B2904]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/697 (42%), Positives = 451/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL+ S+L+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+ARE+SE+ + LAH E KY++ Q +A G QK E +L + ++ V+
Sbjct: 189 EAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELVKMVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
IEA +P +K R E++D +V++ ++ + ++E L K + ++ + ++R+
Sbjct: 249 EKIEAANYNPDKAK--RNESMDNAFNEVEEYIKTKIEDEKLISQVKGICHSIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ +G+R DGR LDE+RPI + +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKGMRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLPP++ FPYT+RV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y++LTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKVLTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD +E I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
S P D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 SNPNEISDF-APKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVINIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K + ++ + ++ EVG IY GVV +KE+GAF+E G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTISLINSYV-KDPEVGEIYDGVVKDIKEFGAFIEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ I DV+ G LS KA+ +P
Sbjct: 658 NVEEVLKIGDEVKVKII--DVKGGKYSLSRKALLEKP 692
>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
Length = 695
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/700 (42%), Positives = 447/700 (63%), Gaps = 15/700 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDY 116
K+ E G R + LETG IAR A+GAVV+ ET VL TV K ++V RDF PLTV+Y
Sbjct: 4 IKKVIEYGDRPLILETGCIARQASGAVVVRYGETVVLVTVVGMK-EAVEGRDFFPLTVNY 62
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QE+ +A G IP + +REG P E+E L R+IDRP+RPLFP F +EVQV+A+V+SSD +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSE 122
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
DPDI + SAAL LS IP+ PI R+G I GQ+++NPT+ ++ S L+LV A T
Sbjct: 123 NDPDIPSLIGASAALTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESALDLVVAGTE 182
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ LM++ +A+E+ E+ + + H E + ++ LAE+AGK +++ + E
Sbjct: 183 KAVLMVESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEAGKPAWDWQSPIEEEDLK 242
Query: 297 EKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTV 355
+ ++ EA ++ + SK ER L ++ + +L E+ + S + + +A+ +
Sbjct: 243 SAIRDIGEARVQEAYQ--VRSKQERQACLTELRNSIVGSLVPEDNSQWSREQVLEAMGAL 300
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
KR++R++I+A G R+DGR +RPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 301 EKRLVREQILAGGERIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTER 360
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+AQ ++++ G +RFMLHY+FPP+C+ E G RRE+GHG LA+++L AV+P E
Sbjct: 361 DAQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNAVVPDEES 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +RV SE+ S+GS+SMATVCG S++LMDAG+P++ VAG+++GL+ E D
Sbjct: 421 FPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEAD------- 473
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +GR I
Sbjct: 474 RFAVLSDILGDEDHLGDMDFKVAGTEKGVTALQMDIKIDGITEEIMRTALTQAREGRFHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDG 654
L M IS PR + +PR+ K + + +R +IG GA R + EETG I V DG
Sbjct: 534 LQKMNEIISTPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDG 593
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + +++ ++ +V+ I+ ++EVG IY+G V+ + ++GAFV G+ GLLH+S
Sbjct: 594 TVKIFSADKADGQEAKRRVEEIVS-DVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHIS 652
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
++S E V VSD +S G + ++ + D +G ++LS+KA+
Sbjct: 653 QISAERVKNVSDKLSEGDIIRVKVLEVDKQGRVRLSVKAI 692
>gi|357386460|ref|YP_004901184.1| polyribonucleotide nucleotidyltransferase [Pelagibacterium
halotolerans B2]
gi|351595097|gb|AEQ53434.1| polyribonucleotide nucleotidyltransferase [Pelagibacterium
halotolerans B2]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/721 (42%), Positives = 449/721 (62%), Gaps = 26/721 (3%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTV 114
+ K E + G + +TLETGK+AR A+GAV+ + ET VL+TV S+K DF PLTV
Sbjct: 5 FDHHKVELDWGGQPLTLETGKVARQADGAVLATLGETVVLATVVSAKTPKAGIDFFPLTV 64
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK FA G IP Y +REG P E E L R+IDRPIRPLFPAG+ +E QV+ +VL D
Sbjct: 65 NYQEKYFAAGKIPGGYFKREGRPTEAETLTSRLIDRPIRPLFPAGYKNETQVIITVLQHD 124
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ +PD++A A SAAL +S +P+ GPIG R+G I G++++N +D+ S L+LV A
Sbjct: 125 MENEPDVLAMVAASAALTISGVPFMGPIGAARVGYIDGEYVLNTPLDKKGDSKLDLVMAG 184
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + LM++ +A+E+SE + + H ++ K ++ I+LAE A K+ +E++ + +S
Sbjct: 185 TADAVLMVESEAKELSEDVMLGAVMFGHSQSQKVIDAIIKLAELAAKEPREFEPADMSAL 244
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
E ++ L E + + + K R +A+D + VK E E + P+ V
Sbjct: 245 EGEMLA-LIETELRDAYKNTD--KMARYDAVDAVKAKVKAHFIPEEGEAAYT--PEQVGA 299
Query: 355 VRK----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
V K +V+R I+ R+DGR L+ VRPI E G LP HGS++F+RG+TQ L T
Sbjct: 300 VFKSLQAKVVRWNILDTKTRIDGRDLETVRPIVSEVGVLPRTHGSAIFTRGETQALVVAT 359
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ V
Sbjct: 360 LGTADDEQFIDSLEGTYKQNFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAINPVR 419
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+P+++ VAG+++GL+ E
Sbjct: 420 PTAEEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPMKKAVAGIAMGLILE---- 475
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A
Sbjct: 476 -GE--KFAVLSDILGDEDHLGDMDFKVAGTHDGVTSLQMDIKIAGITEEIMKIALAQAKD 532
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR IL M + I R++ +PR+ TLK D +R +IG G + R+I E+TG +I+
Sbjct: 533 GRKHILGEMAKAIDTARSEVGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKIN 592
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + + ++ ++ + I E EVG IY+G V ++GAFV F G + G
Sbjct: 593 IEDDGTVKVSSSDGKQIDAAIKWIKSIT-DEPEVGEIYQGTVVKTADFGAFVNFFGAKDG 651
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS-------PRPEADV 762
L+H+S+L+ E V + +DVV G ++ ++ +G D RG ++LS+K V R EAD
Sbjct: 652 LVHISQLAEERVGKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQETGKEKTREEADA 711
Query: 763 K 763
+
Sbjct: 712 E 712
>gi|425074006|ref|ZP_18477111.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW4]
gi|404594417|gb|EKA94999.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW4]
Length = 709
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/697 (42%), Positives = 452/697 (64%), Gaps = 20/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD T V TV + K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLTVNYQERS 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +E+QV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS +P+ GPIG R+G I GQ+++NPT+DEL +S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L + GK+K ++ I++ ++++
Sbjct: 188 MVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQSLHDRIA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDE-ESLQVLPKAVDTVR 356
LA+ I + K ER E +D I +V L +E DE E +++ +
Sbjct: 248 QLAQTRIGDAYR--ITEKQERYEQIDAIRDEVISTLLAEDESLDEGEIIEIFSG----LE 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
K+++R R++A R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +
Sbjct: 302 KKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARD 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++ ++G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P +F
Sbjct: 362 AQTIDDIMGEHTDTFLLHYNFPPYSVGETGIMGSPKRREIGHGRLAKRGVLAVMPTIEEF 421
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++E VAG+++GLV E GE +
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKE-----GE--N 474
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AG+R GV+A+Q+DIK GI +I+ L A RL IL
Sbjct: 475 FVVLSDILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHIL 534
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
ME IS PR + +PR+ T+K + D ++ +IG G++ R + EETG I + DGT
Sbjct: 535 GVMESAISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + ++ + +++ I E+EVG IY G VT + ++GAFV GG++GL+H+S+
Sbjct: 595 VKIAATSGEQAKQAIARIEEITA-EVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQ 653
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
++ + V +VSD +++GQ++ ++ + D +G I+LS+K
Sbjct: 654 IADKRVEKVSDYLTMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus
flavithermus WK1]
gi|226702595|sp|B7GG69.1|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Anoxybacillus flavithermus WK1]
Length = 702
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/703 (42%), Positives = 451/703 (64%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K F I R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLT
Sbjct: 1 MEQEKHVFSIDWAGRPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKSVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D P++ A +S AL +SDIP+ GPI + +GR+ G+F++NP++ ++ SD++LV A
Sbjct: 121 DQDCSPEMAAMFGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDMHLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q +A K GK+K E L ++
Sbjct: 181 GTKDAINMVEAGANEVPEEVMLEAIMFGHEEIKRLIAFQEDIAAKVGKEKMEVVLYELNA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAV 352
+ ++ E ++ P K R A++++ +V A EE E DEE+L+ + + +
Sbjct: 241 ELEAEIRARVEGEVKRAVQVPE--KLAREAAIEQLKAEVVAAYEEQEADEETLKQVKEIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K +R+ I E VR DGR++DE+RP+ G LP HGS LF+RG TQ L TLG
Sbjct: 299 YKLVKEEVRRLITEEKVRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L TKRFM HY+FPPF + E G G RRE+GHG L E+AL V+P
Sbjct: 359 ALGDVQILDGLGIEETKRFMHHYNFPPFSVGETGAMRGPGRREIGHGALGERALEPVIPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +G
Sbjct: 419 EKEFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVK-----SG 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E Y ILTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR
Sbjct: 474 E--HYTILTDIQGMEDHLGDMDFKVAGTEKGVTALQMDIKIKGLSREILEEALQQARKGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L+IL HM + IS PR + +P++ T++ + D +R +IGP G KI EETG +I +
Sbjct: 532 LEILKHMMQTISEPRKELSPYAPKILTMQINPDKIRDVIGPSGKQINKIIEETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTIFISSVNEEMNKKAKKIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFSGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 651 HISELAEERVGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
95/1000]
gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
95/1000]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/697 (42%), Positives = 451/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL+ S+L+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+ARE+SE+ + LAH E KY++ Q +A G QK E +L + ++ V+
Sbjct: 189 EAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELVKMVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
IEA +P +K R E++D +V++ ++ + ++E L K + ++ + ++R+
Sbjct: 249 EKIEAANYNPDKAK--RNESMDNAFNEVEEYIKTKIEDEKLISQVKGICHSIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ +G+R DGR LDE+RPI + +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKGMRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLPP++ FPYT+RV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y++LTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKVLTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD +E I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
S P D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 SNPNEISDF-APKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVINIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K + ++ + ++ EVG +Y GVV +KE+GAF+E G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTISLINSYV-KDPEVGEVYDGVVKDIKEFGAFIEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ I DV+ G LS KA+ +P
Sbjct: 658 NVEEVLKIGDEVKVKII--DVKGGKYSLSRKALLEKP 692
>gi|383768327|ref|YP_005447390.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
S23321]
gi|381356448|dbj|BAL73278.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
S23321]
Length = 718
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/710 (42%), Positives = 437/710 (61%), Gaps = 21/710 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + D
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A+SAAL LS P+ GPIG R+G +FI+NPT+DE+ + L+LV A T +
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E + + H + I LAEKA K+ +E +++I LEK
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VTVIDNSALEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTV 355
+ L E + + + P K +R A+ K+ + V E E L +
Sbjct: 244 EMLGLVEQELRSAYAIPV--KQDRYAAVGKVKEKVMAHYFPEGQEPKYDKLRISGVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E K
Sbjct: 422 FPYTTRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLIL-------EDK 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMKVALGQAKDGRIHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMAKALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+L+ V + SDVV G ++ ++ +G D RG +LS+K V D++G
Sbjct: 654 QLASSRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDLEG 703
>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
BJ001]
gi|226702662|sp|B1ZGS7.1|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
BJ001]
Length = 745
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/711 (42%), Positives = 447/711 (62%), Gaps = 23/711 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK AR A+GAVV ET VL+TV ++K DF+PLTV+YQE
Sbjct: 6 REELIWGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ A SAAL LS +P+ GPIG R+G + G + +NP + E++ S L+LV A T++
Sbjct: 126 PDIVSMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H +E IRLAEKA K+ +++ S +EK
Sbjct: 186 VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDF--SPPENADVEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL-PKAVDTVR 356
V ++ E+ + + K +R +A+D + V AL C E Q P+ V
Sbjct: 244 AVLDICESELRDAYK--ITVKQDRYKAVDAVKAKVVAAL---CPAEGEQKFSPEKVKAAF 298
Query: 357 K----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
K +V+R I+ G R+DGR + VRPI E G LP HGSSLF+RG+TQ L TLG
Sbjct: 299 KEAQSKVVRWNILDTGSRIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP
Sbjct: 359 TGEDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPP 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
++FPYT+RV SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E G
Sbjct: 419 AHEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----G 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR
Sbjct: 474 E--RFAVLSDILGDEDHLGDMDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + ++A R + +PR+ T++ D +R +IG G + R+I E+TG +I++
Sbjct: 532 AHILGEMAQALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIE 591
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + + ++ + I+ E E G IY G + + E+GAFV F G + GL+
Sbjct: 592 DTGVVKIASSDGKAIKAAYNWIRSIVA-EPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
H+SEL+ + V++V DVV GQ++ ++ +G D RG I+LS+K V D+
Sbjct: 651 HISELAPQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 701
>gi|365972256|ref|YP_004953817.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
EcWSU1]
gi|365751169|gb|AEW75396.1| Polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
EcWSU1]
Length = 712
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/702 (41%), Positives = 445/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKDETIATLIAEDETLDANELSEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 417 DADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE----- 471
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE ++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 472 GE--NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase [Candidatus Koribacter versatilis
Ellin345]
gi|123381514|sp|Q1IQ54.1|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345]
Length = 815
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/696 (43%), Positives = 436/696 (62%), Gaps = 22/696 (3%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G + ++ ETGK+A+ A+G+ ++ ++ VL+T ++ DF PLTVDY+E +A G
Sbjct: 14 GGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDYREYTYAGG 73
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
P +++REG P E+E+L R IDRPIRPLFP GF E QV+A VLS+D + DPD+
Sbjct: 74 RFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVCGI 133
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
N SAAL +SDIP+ GPIG +R+G I GQ IVNPT DE+ S LN++ T E +MI+
Sbjct: 134 NGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVGTAEGIVMIES 193
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
A E +E+++ + + H E K +LA++ GK K+ + + L+ +
Sbjct: 194 GAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQPYLDGLRKKIG 253
Query: 305 AHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEEC---DEESLQVLPKAVDTVRKRVI 360
A + +A+ T+ K+ + E+ K+ +++K L+EE D+ +L+ L K + +R+ +
Sbjct: 254 ADLADALNTE----KYPKSESYAKV-KEIKSKLKEEIPADDDAALKKLGKYYELLREDIF 308
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+++ E R DGR D++R I+ E LP HGS++F+RG+TQ L T TLG + QR+
Sbjct: 309 RQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRM 368
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
E G KRFMLHY+FPPF + EV G RRE+GHG LAE+AL AVLP E+ +PY +
Sbjct: 369 EGFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSEDKWPYAM 428
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S+++ S+GS+SMA++CGGS++LMDAG+PL+ VAG+++GLV E D DY IL
Sbjct: 429 RVVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGD-------DYAIL 481
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI G EDH GDMDFK+AGT G+TA+Q+DIK GI I+ E LE A +GRL ILD M
Sbjct: 482 TDIAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMN 541
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
I +PRT+ +PR TL+ D +R LIGP G + R I E TG +I V D G + V
Sbjct: 542 EVIQSPRTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVA 601
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ ++ +K L+ + I EVG Y G VT + ++GAFVE G GLLH+SE++
Sbjct: 602 SSDQEAAKKALKMIGDITAT-AEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEH 660
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKAV 754
+ V D + G Q+ ++ + D GN IKLS KAV
Sbjct: 661 RIKDVKDELHEGDQVLVKVLAVD--GNRIKLSRKAV 694
>gi|359300105|ref|ZP_09185944.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
[parainfluenzae] CCUG 13788]
Length = 712
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 433/694 (62%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E LV R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT+ E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + + + H + +E +AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLSAVVFGHQQQQVVIENIKEFVREAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R +D+I +V L E + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYAQIDEIKAEVIATLTAEDETVSEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+A R+DGR D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRILAGEPRIDGRTKDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEND-------NFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IY G VT V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYTGKVTRVVDFGAFVSILGGKEGLVHISQITD 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RVSD ++VGQ++ ++ + D + I+L++K
Sbjct: 656 ARVERVSDYLTVGQEVQVKVVEIDRQNRIRLTMK 689
>gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium
autotrophicum HRM2]
gi|257096686|sp|C0QHM6.1|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2]
Length = 695
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/694 (42%), Positives = 432/694 (62%), Gaps = 14/694 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEKQF 121
E+ + +L GKIA+ A+G+V++ ET VL T ++K DSV FLPLTV+YQEK +
Sbjct: 8 ELNGKEFSLRAGKIAKQASGSVIVQYGETIVLVTAVAAKEARDSV-SFLPLTVEYQEKIY 66
Query: 122 AQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
A G IP Y RRE G P E+E L R+IDRPIRPLF G+ E+QV+A+V+S+D + DPD
Sbjct: 67 AAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKENDPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A SAAL +SDIP+ GPI +R+GRI G+FI NPT+ E+ SD+ LV A ++ +
Sbjct: 127 VLALVGASAALQMSDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSKTGVV 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A +SE D+ + H ++ Q L + GK+K+ Y ++ E+ + KV
Sbjct: 187 MVEGGADVVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKEKRAYTPPLVDEELMAKVV 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA+ I + KFER +ALD + +V + L E + ++ D V+K V
Sbjct: 247 ELAQDKIHTAVQ--TQGKFERVKALDDVRTEVIETLGEAFADRINEIKSMFGDLVKK-VS 303
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK ++ E R+DGR DEVR I CE G LP HGS+LF+RG+TQVL +TLG+ + QR+
Sbjct: 304 RKIVLTENQRIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQRI 363
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
E+L G T+ FMLHY+FPPF + E + G +RR+VGHG LA +AL VLP + DF YT+
Sbjct: 364 ETLNGNETRNFMLHYNFPPFSVGECRRAGGPSRRDVGHGNLAHRALARVLPDQADFEYTI 423
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ EVM S+GS+SM TVC G++ALMD G+P+ V+G+++GLVS+ D + +L
Sbjct: 424 RLVGEVMESNGSSSMGTVCAGTLALMDGGVPIAAPVSGIAMGLVSDADNTV-------VL 476
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDH GDMDFK+AGT G+TA+Q+DIK +P ++ + L+ A GRL IL M
Sbjct: 477 TDILGDEDHFGDMDFKVAGTEQGITALQMDIKIRELPKAVLVKALDQARIGRLHILKRML 536
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
+ R + +P++ T+K + D +R +IGP G + R I+ +T I V D L +A
Sbjct: 537 ATLEIHRDKMSPYAPKIITVKINPDKIREIIGPGGKMIRSIQADTNTNIEVDDSGLIKIA 596
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ K+ IG + E+GGIY+G V ++GAFV G GL+H+SEL++
Sbjct: 597 AENQEDGEAAAKIVSDIGMDPEIGGIYEGEVVKTTDFGAFVRIKTGTDGLVHISELANHR 656
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V+DVV G+ + ++ + G I+LS KA+
Sbjct: 657 VKKVTDVVKEGEVIRVKVLEITRDGKIRLSCKAL 690
>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cytotoxicus
NVH 391-98]
gi|187470935|sp|A7GRD7.1|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
391-98]
Length = 710
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/694 (42%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKDVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+FI+NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKMEVKLYEVDAELEKAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAVDTVRKRVIR 361
AE + + K R +A++++ Q V EE E + E L + + + + K +R
Sbjct: 250 AEKDMHTAIQ--VHEKHAREDAINEVKQRVIAHYEEQEVEAEVLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRKELSEYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
++ + EK + ++ I+ RE++VG IY G V ++++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 IDQQMNEKAKKIIEDIV-REVQVGEIYLGKVKRIEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
Length = 706
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/696 (41%), Positives = 440/696 (63%), Gaps = 18/696 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTEGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L + GK K +++ ++E +V+
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPKWDWQAPAVNETLHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LAE + + K +R +D I +DV AL +E D +Q + + +V K
Sbjct: 248 ELAEGRLGDAYH--ITEKQQRYAQVDAIKEDVIAALLAQDESLDAGEIQDI---LGSVEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFP
Sbjct: 363 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NF 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILG 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
ME+ IS PR + +PR+ T+K + D ++ +IG G++ R + EETG I + DGT+
Sbjct: 536 VMEQAISTPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H+S++
Sbjct: 596 KIAATDGEKAKFAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|423125945|ref|ZP_17113624.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5250]
gi|376398046|gb|EHT10674.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5250]
Length = 712
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDESLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
Length = 723
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/694 (42%), Positives = 444/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R + +ETG++A+ ANGAV++ +T VLST T+S+ DF PLTV+Y+E+ +A
Sbjct: 10 IDVAGRPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +LV R+IDRPIRPLF GF +EVQV++ V+S D P++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI + +GR+ GQF++NPT++++ SDL+LV A T++ M+
Sbjct: 130 ALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E + + Q +A + GK+K E L ++ L
Sbjct: 190 EAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQL 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AEA I+ P K R A++ + V E EE DEE L+ + + + + K +R
Sbjct: 250 AEADIKRAVQVP--EKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FPPF + E G G RRE+GHG L E+AL V+P E +FPYT+R
Sbjct: 368 GLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD-------HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ +I+ E L A KGRL+ILDHM +
Sbjct: 481 DIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+S PR + + +P++ + + D +R +IGP G KI +ETG +I + DGT+ + +
Sbjct: 541 TLSEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+
Sbjct: 601 VDEAANQKAKQIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGR 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 660 VGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 759
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/709 (40%), Positives = 441/709 (62%), Gaps = 12/709 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+ G + + +ETG+IAR ANGAV++ +D T +L+TV +SK +DF PLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF +EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A SAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAAMIGVSAALAISGIPFAGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE + G+ H +A + L +AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGGVVFGHEQANIAINAIHELVREAGKPVWDWQAPAEDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV +LAE + AV+ SK R +AL + V +AL+ + + +
Sbjct: 243 AFVAKVKDLAEEKLRAVYQ--IRSKQARTQALREANASVMEALKASGEPFDAGKVGDLLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R +I+A R+DGR VRPI S LP HGS+LF+RG+TQ L TLG
Sbjct: 301 AIESKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RFM HY+ PPF EVG+ RRE+GHG LA++AL+AVLP +
Sbjct: 361 ERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E +
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + RL
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARL 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + +T+ +P+L T+K + + +R +IG GA+ R + EETG +I++
Sbjct: 534 HILGKMQEAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ A + + ++++ I E+E+G IY+G V + ++GA + G+ GLLH
Sbjct: 594 DGTITIAATDAEKADVAKKRIEQITA-EVEIGKIYEGPVVKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+S+++HE V +V+D ++ GQ + ++ + D +G +KLS++A+ RP D
Sbjct: 653 ISQIAHERVEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGD 701
>gi|375257536|ref|YP_005016706.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca KCTC
1686]
gi|402840250|ref|ZP_10888719.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. OBRC7]
gi|365907014|gb|AEX02467.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca KCTC
1686]
gi|402287200|gb|EJU35660.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. OBRC7]
Length = 712
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDEALDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase [Rhodopseudomonas palustris CGA009]
gi|81564252|sp|Q6NCN8.1|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris CGA009]
Length = 722
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 440/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGK+AR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 AYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A A SAAL LS +P+ GPIG R+G I ++++NP +DE++ + L LV A T +
Sbjct: 127 DVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E+SE+ + + H ++ I LAEKA K+ +E L+++ + +EK
Sbjct: 187 LMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRE--LTVVDDSEIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ L E + A + P K +R A+ K+ + E E L A +
Sbjct: 245 MLGLVEQELRAAYAIPV--KQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I + G LP HGS+LF+RG+TQ + TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE--R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + + R + ++PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + ++ ++ + I + EVG IY+G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGESIKAAIKWIKS-IASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 655 LAAGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens DM4]
gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens DM4]
Length = 748
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/702 (43%), Positives = 438/702 (62%), Gaps = 21/702 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK AR A+G+VV ET VL+TV + K DFLPLTV+YQE
Sbjct: 6 REELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G + G + +NP + E++ S L+LV A T++
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H +E IRLAEKA K+ +++ E +
Sbjct: 186 VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDF---TPPENADVE 242
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL-PKAVDTVRK 357
+ LA A E K ER A+D + V AL C E Q P+ V K
Sbjct: 243 AAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAAL---CPAEGEQKFSPEKVKAAFK 299
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+V+R I+ G R+DGR + VR I E G LP HGSSLF+RG+TQ L TLG
Sbjct: 300 EAQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP
Sbjct: 360 GEDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPA 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E GE
Sbjct: 420 HEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ L A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRA 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + ++A R + +PR+ T++ D +R +IG G + R+I E+TG +I++ D
Sbjct: 533 HILGEMSKALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIED 592
Query: 654 -GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
G + + + + ++ + I+ E E G IY G + + E+GAFV F G + GL+H
Sbjct: 593 TGIVKIASSDGKAIKAAYNWIRSIVA-EPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+SEL+ + V++V DVV GQ++ ++ +G D RG I+LS+K V
Sbjct: 652 ISELAAQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVV 693
>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens CM4]
gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens AM1]
gi|418058277|ref|ZP_12696254.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens DSM 13060]
gi|254782727|sp|B7KN55.1|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096722|sp|A9W8P8.2|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens CM4]
gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens AM1]
gi|373568198|gb|EHP94150.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens DSM 13060]
Length = 745
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/702 (43%), Positives = 438/702 (62%), Gaps = 21/702 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK AR A+G+VV ET VL+TV + K DFLPLTV+YQE
Sbjct: 6 REELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G + G + +NP + E++ S L+LV A T++
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H +E IRLAEKA K+ +++ E +
Sbjct: 186 VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDF---TPPENADVE 242
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL-PKAVDTVRK 357
+ LA A E K ER A+D + V AL C E Q P+ V K
Sbjct: 243 AAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAAL---CPAEGEQKFSPEKVKAAFK 299
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+V+R I+ G R+DGR + VR I E G LP HGSSLF+RG+TQ L TLG
Sbjct: 300 EAQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP
Sbjct: 360 GEDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPA 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E GE
Sbjct: 420 HEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ L A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRA 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + ++A R + +PR+ T++ D +R +IG G + R+I E+TG +I++ D
Sbjct: 533 HILGEMSKALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIED 592
Query: 654 -GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
G + + + + ++ + I+ E E G IY G + + E+GAFV F G + GL+H
Sbjct: 593 TGIVKIASSDGKAIKAAYNWIRSIVA-EPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+SEL+ + V++V DVV GQ++ ++ +G D RG I+LS+K V
Sbjct: 652 ISELAAQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVV 693
>gi|398304210|ref|ZP_10507796.1| polynucleotide phosphorylase/polyadenylase [Bacillus vallismortis
DV1-F-3]
Length = 706
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/689 (42%), Positives = 439/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI +FI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDKFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E L I E+ EKV LAE +
Sbjct: 195 EVPEETMLEAIMFGHDEIKRLIAFQEEIVAAVGKEKSEIALYEIDEELSEKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNTVVAKFEDEEHDEDTIKQVKQILSKMVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++ILD M +S
Sbjct: 486 EDALGDMDFKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILDSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NHKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
ammonificans HB-1]
gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
ammonificans HB-1]
Length = 714
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/690 (41%), Positives = 436/690 (63%), Gaps = 14/690 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQF 121
E+G R + +TGK+A+ A+G+V++ +T VL T V S + DF PL V+Y+E+ +
Sbjct: 8 IEVGGRPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEYRERAY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P + E+L R+ DR IRP+FP GF ++VQV+A V+S+D + DP +
Sbjct: 68 AAGKIPGGFIKREGKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQENDPAV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A N SAAL +S IP+ P+G +R+ R+ G+ ++NP+ +E +D++L+ + T + +M
Sbjct: 128 LAINGASAALHISRIPFEKPVGAVRVARVDGKLVINPSYEERQRADIDLIVSGTEDAVVM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A+E+ E+++ + LAH E K ++ Q L AGK K ++ + T E++
Sbjct: 188 VEGGAKEVPEEEVLDAILLAHEEIKKIVKAQDELRNLAGKPKYQFVAPELDPATKERIKQ 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
IE V T K ER E L ++ + + +E EE + +A + K +R
Sbjct: 248 WVFERIEPVIT--IKDKHERREKLRELKELM--LIELNIPEEDHHLAKEAFNEAEKEFVR 303
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
K ++ GVR+DGR+ DE+RPI E G LP HGS+LF+RG TQ L T TLG P E Q +E
Sbjct: 304 KMVLERGVRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQLVE 363
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L+ KRFMLHY+FPPFC+ E+ G RRE+GHG LAE+AL V+PPE +FPY +R
Sbjct: 364 GLMPEEQKRFMLHYNFPPFCVGEISPMRGPGRREIGHGALAERALAPVIPPEEEFPYVIR 423
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V S+++ S+GS+SMATVCGGS++LMDAG+P++ VAG+++GL+ E D + +L+
Sbjct: 424 VVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLIMEGD-------KFVVLS 476
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTAIQ+D+K GI +++ + LE A +GR+ ILD M+
Sbjct: 477 DILGDEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISREVLSKALEQARRGRMFILDKMDA 536
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVA 660
IS PR + +PR+ T K D + R LIGP G + I ++ G +I++ DGT+ V A
Sbjct: 537 VISEPRKELSPYAPRIVTTKIDPEKTRDLIGPSGKTIKTIIDKAGVKITIKEDGTVLVSA 596
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ + L+ ++ + +++EVG Y G VT V+ YGAFVE G+ GL+H+S+L E
Sbjct: 597 PSEEAAAQALKMIEDVT-KDLEVGNTYLGKVTRVENYGAFVELAPGKVGLVHISKLPPEL 655
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLS 750
+ + + V + ++ + D G KLS
Sbjct: 656 RENIFEKIKVSDLIPVKIVEFDQFGRPKLS 685
>gi|336113862|ref|YP_004568629.1| polyribonucleotide nucleotidyltransferase [Bacillus coagulans 2-6]
gi|335367292|gb|AEH53243.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 2-6]
Length = 704
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/690 (43%), Positives = 445/690 (64%), Gaps = 14/690 (2%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGA ++ ET VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D P++ A +
Sbjct: 75 GGFIKREGRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCTPEMAAMLGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+F++NPT++++ SD++L A T++ M++ A+
Sbjct: 135 SLALSVSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDIHLTVAGTKDAINMVEAGAK 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA-EAH 306
E+ E+ + + H E + + Q ++ + GK+K +L + E+ +EKVS + +
Sbjct: 195 EVPEEVMLEAIMFGHEEIKRLIAFQEKIVAEIGKEKMAVELFELDEELVEKVSGMCRDEM 254
Query: 307 IEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRII 365
IEA+ + K R EA+ K+G +V E EE DEE+++ + + + + K +RK I
Sbjct: 255 IEAI---QVHEKKAREEAIRKVGDEVLTRFEAEEADEETVKQVKQILHDIEKEEVRKLIT 311
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
+ +R DGR++DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 312 VDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGI 371
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E +FPYT+R+ SE
Sbjct: 372 EESKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEFPYTIRLVSE 431
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
V+ S+GSTS A++C ++A+MDAGIP++ VAG+++GLV +GE Y ILTDI G
Sbjct: 432 VLESNGSTSQASICASTLAMMDAGIPIKAPVAGIAMGLV-----KSGE--HYTILTDIQG 484
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
+EDHLGDMDFK+AGT GVTA+Q+DIK AG+ +I+ E L+ A KGR+QILDHM IS
Sbjct: 485 MEDHLGDMDFKVAGTSKGVTALQMDIKIAGLSREILEEALQQARKGRMQILDHMMSTISK 544
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRS 664
R +P++ T+ D +R +IGP G KI +ETG +I + DGT+ + + +
Sbjct: 545 TRDHLSVYAPKILTMTIHPDKIRDVIGPSGKQINKIIDETGVKIDIEQDGTIFISSTDED 604
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 605 ANNKAKQLIEDIV-REVEVGKVYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVRKV 663
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D G I LS KAV
Sbjct: 664 EDVVKIGDEILVKVTDIDSHGRINLSRKAV 693
>gi|431808006|ref|YP_007234904.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
P43/6/78]
gi|430781365|gb|AGA66649.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
P43/6/78]
Length = 712
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/697 (42%), Positives = 451/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL+ S+L+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNRELASSELDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+ARE+SE+ + LAH E KY++ Q +A G QK E +L + ++ V+
Sbjct: 189 EAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELVKMVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
IEA +P +K R E++D +V++ ++ + ++E L K + ++ + ++R+
Sbjct: 249 EKIEAANYNPDKAK--RNESMDNAFNEVEEYIKTKIEDEKLISQVKGICHSIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ +G+R DGR LDE+RPI + +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKGMRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLPP++ FPYT+RV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y++LTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKVLTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD +E I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
S P D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 SNPNEISDF-APKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVINIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K + ++ + ++ EVG +Y GVV +KE+GAF+E G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTISLINSYV-KDPEVGEVYDGVVKDIKEFGAFIEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ I DV+ G LS KA+ +P
Sbjct: 658 NVEEVLKIGDEVKVKII--DVKGGKYSLSRKALLEKP 692
>gi|402826757|ref|ZP_10875917.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. LH128]
gi|402259713|gb|EJU09916.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. LH128]
Length = 767
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/712 (42%), Positives = 451/712 (63%), Gaps = 30/712 (4%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 MEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +RE E+E L R+IDRP+RPLFP GFY+E+ V+A VLS DG+ +
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETEA 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD--LNLVYACTRE 237
DI+A A SAAL +S +P+ GPIG R+G + G++ +NP +L+D L+LV A T +
Sbjct: 127 DIVAMIAASAALTISGVPFMGPIGAARVGFVDGEYTLNPKQTA-ALTDGRLDLVVAATGD 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E++E+++ + AH E K + I LAEKA K+ + LS +
Sbjct: 186 AVMMVESEAKELTEEEMLGAVVFAHDEIKKVVNLIIDLAEKAAKEPWDIDLSDNTADIKA 245
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
K+ + A + TD S R AL+ K+A E + LQ++ A+ T+
Sbjct: 246 KLKKAVGKDVTAAYKLTDKS----ARSNALNAARAKAKEAFSGETPQ--LQMV--AIKTM 297
Query: 356 RK---RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+K ++R I+ +G R+DGR L++VRPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 298 KKLEADIVRGAILKDGKRIDGRTLEQVRPIEAIVGFLPRTHGSALFTRGETQSICTTTLG 357
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
Q ++ L G FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP
Sbjct: 358 TKDAEQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPA 417
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ DFPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL V+G+++GL+ E
Sbjct: 418 KEDFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEG----- 472
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
KD+ +L+DILG EDHLGDMDFK+AGT +G+T +Q+DIK AGI +I+ + LE A GR
Sbjct: 473 --KDFAVLSDILGDEDHLGDMDFKVAGTEVGITTMQMDIKIAGITREIMAKALEQAKAGR 530
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + + + RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ +
Sbjct: 531 AHILGEMTKALGSSRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDID 590
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + + + +E + + I+ E EVG +Y+G V ++ ++GAFV F GG+ GL+
Sbjct: 591 DEGVIKISSSDIAQIEAAKKWILGIV-EEAEVGKVYQGKVVNIVDFGAFVNFMGGKDGLV 649
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
HVSE+ +E V + +DVV GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 650 HVSEMKNERVEKPTDVVKEGQEVYVKVLEIDQRGKVRLSMRVVDQETGAELE 701
>gi|423110531|ref|ZP_17098226.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5243]
gi|423116530|ref|ZP_17104221.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5245]
gi|376378096|gb|EHS90860.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5245]
gi|376379096|gb|EHS91851.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5243]
Length = 712
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|391233309|ref|ZP_10269515.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
gi|391222970|gb|EIQ01391.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
Length = 755
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/709 (42%), Positives = 435/709 (61%), Gaps = 22/709 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K+ E+ I TG +A+FANGAV + + ET V + T+++ ++R DF PLTVDY
Sbjct: 4 KQTVEVPGLGIKFTTGDMAKFANGAVTVTVGETNVFVSATAAQ--TMRPGQDFFPLTVDY 61
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
+EK A G P Y +REG P E+E+L R+ DRP RPLFP GF +EVQ++ +LS+D
Sbjct: 62 REKYSAAGRFPGGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGLLLSADQI 121
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+ DI N SAAL +SDIPW GPIG +R+ I QF+ NPT++++ S L+L+Y
Sbjct: 122 HEADIAMVNGASAALAISDIPWNGPIGAVRVALIDSQFVANPTIEQMFSSTLDLIYVGNE 181
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQT 295
+ LMI+ A ++ E+ L AH +A++ + IR LA +AGK K + L + +
Sbjct: 182 KDMLMIEGSADQLPEERFIEALEFAH-QAIQPIIATIRDLAARAGKPKAVFPLVVAKPEA 240
Query: 296 LEKVSNLAEAH--IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKA 351
+ + EA+F + K RG ++ + ++ + AL E E + +
Sbjct: 241 RAIIERVVPQQRVSEAIF---GFEKQVRGANINALKEEARAALLAELGEGNFADHDISIV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ ++ + R ++ GVR D R +RPI E G LP +HGS+LF RGDTQ L T TL
Sbjct: 298 FEDLQYKAYRATVLERGVRADKRDAKSLRPIASEVGVLPRVHGSALFQRGDTQGLVTATL 357
Query: 412 GAPAEAQRLESLVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
G EAQ ++ L G T K F+LHY+FPP+ + E G+ G RRE+GHG LAE++L+ VL
Sbjct: 358 GPTKEAQDMDGLTGGATSKSFILHYNFPPYSVGETGRFTGPGRREIGHGALAERSLVPVL 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
PPE+ FPYT+R+ S++MAS+GSTSMA++CGG +ALMDAG+P+ VAG+S GL++ P
Sbjct: 418 PPEDVFPYTIRLVSDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTSNKPD 477
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
G I ++ +TDILG EDH GDMDFK+AGT G+T QLD+K G+P++I + A
Sbjct: 478 -GSIDNWVTITDILGEEDHFGDMDFKLAGTTKGITGFQLDLKINGLPIEIARTAIFQARD 536
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R++IL M I APR +PR+ T++ + + + LIGP G R+I E TG +I
Sbjct: 537 ARIEILKLMLSAIPAPRKTLSAYAPRIQTIQINPEKIGLLIGPGGKTIRRIVETTGAQID 596
Query: 651 VSD---GTLTVVAKNRSVMEKVLEKVDFII--GREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+SD G + + + N M + + ++D + G +IEVG IY G V+ VKE+GAFVE
Sbjct: 597 ISDDDSGKVFIYSNNADSMNRAISEIDALCGGGSQIEVGKIYTGRVSGVKEFGAFVECLP 656
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKA 753
G++GL H+SEL+ V R DVV VG ++++CIG D R N ++LS +A
Sbjct: 657 GKEGLCHISELADFRVRRTEDVVKVGDSITVKCIGIDERTNKVRLSRRA 705
>gi|347750449|ref|YP_004858014.1| polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
gi|347582967|gb|AEO99233.1| polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
Length = 704
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/690 (43%), Positives = 445/690 (64%), Gaps = 14/690 (2%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGA ++ ET VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D P++ A +
Sbjct: 75 GGFIKREGRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCTPEMAAMLGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+F++NPT++++ SD++L A T++ M++ A+
Sbjct: 135 SLALSVSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDIHLTVAGTKDAINMVEAGAK 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA-EAH 306
E+ E+ + + H E + + Q ++ + GK+K +L + E+ +EKVS + +
Sbjct: 195 EVPEEVMLEAIMFGHEEIKRLIAFQEKIVAEIGKEKMAVELFELDEELVEKVSGMCRKKM 254
Query: 307 IEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRII 365
IEA+ + K R EA+ K+G +V E EE DEE+++ + + + + K +RK I
Sbjct: 255 IEAI---QVHEKKAREEAIRKVGDEVLAQFEAEEADEETVKQVKQILHDIEKEEVRKLIT 311
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
+ +R DGR++DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 312 VDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGI 371
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E +FPYT+R+ SE
Sbjct: 372 EESKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEFPYTIRLVSE 431
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
V+ S+GSTS A++C ++A+MDAGIP++ VAG+++GLV +GE Y ILTDI G
Sbjct: 432 VLESNGSTSQASICASTLAMMDAGIPIKAPVAGIAMGLV-----KSGE--HYTILTDIQG 484
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
+EDHLGDMDFK+AGT GVTA+Q+DIK AG+ +I+ E L+ A KGR+QILDHM IS
Sbjct: 485 MEDHLGDMDFKVAGTSKGVTALQMDIKIAGLSREILEEALQQARKGRMQILDHMMSTISK 544
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRS 664
R +P++ T+ D +R +IGP G KI +ETG +I + DGT+ + + +
Sbjct: 545 TRDHLSVYAPKILTMTIHPDKIRDVIGPSGKQINKIIDETGVKIDIEQDGTIFISSTDEE 604
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 605 ANNKAKKLIEDIV-REVEVGKVYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVRKV 663
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D G I LS KAV
Sbjct: 664 EDVVKIGDEILVKVTDIDSHGRINLSRKAV 693
>gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont]
Length = 710
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/711 (41%), Positives = 447/711 (62%), Gaps = 16/711 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K + +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+ +V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DE+ S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ L+++ +A ++E + + H + +E L +AGK + +++ ++
Sbjct: 181 GTQNAVLIVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +V+ LAEA I + TD K ER + I + AL E + +
Sbjct: 241 ALIARVAALAEARISDAYRITD----KQERYAQVGVIKDETIAALLAEDETLDDAEIGDI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V ++ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L TL
Sbjct: 297 VHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPPF + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNLDELMGERTDSFLFHYNFPPFSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
++ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 417 KQDAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEK-- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 475 -----FVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILSVMEQAISTPRQEISEFAPRIYTIKINTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K + + A+
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATEQKPAE 699
>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens PA1]
gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens PA1]
Length = 752
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/702 (43%), Positives = 438/702 (62%), Gaps = 21/702 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK AR A+G+VV ET VL+TV + K DFLPLTV+YQE
Sbjct: 13 REELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQE 72
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 73 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLEND 132
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G + G + +NP + E++ S L+LV A T++
Sbjct: 133 PDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVAGTQDA 192
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H +E IRLAEKA K+ +++ E +
Sbjct: 193 VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPP---ENADVE 249
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL-PKAVDTVRK 357
+ LA A E K ER A+D + V AL C E Q P+ V K
Sbjct: 250 AAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAAL---CPAEGEQKFSPEKVKAAFK 306
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+V+R I+ G R+DGR + VR I E G LP HGSSLF+RG+TQ L TLG
Sbjct: 307 EAQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGT 366
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP
Sbjct: 367 GEDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPA 426
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E GE
Sbjct: 427 HEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----GE 481
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ L A GR
Sbjct: 482 --RFAVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRA 539
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + ++A R + +PR+ T++ D +R +IG G + R+I E+TG +I++ D
Sbjct: 540 HILGEMSKALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIED 599
Query: 654 -GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
G + + + + ++ + I+ E E G IY G + + E+GAFV F G + GL+H
Sbjct: 600 TGIVKIASSDGKAIKAAYNWIRSIVA-EPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVH 658
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+SEL+ + V++V DVV GQ++ ++ +G D RG I+LS+K V
Sbjct: 659 ISELAAQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVV 700
>gi|390169556|ref|ZP_10221490.1| polynucleotide phosphorylase/polyadenylase [Sphingobium indicum
B90A]
gi|389587830|gb|EIM65891.1| polynucleotide phosphorylase/polyadenylase [Sphingobium indicum
B90A]
Length = 771
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/703 (42%), Positives = 442/703 (62%), Gaps = 23/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K E+G + +TLETG+IAR A+ AV+ ET VL VT++K SV+ DF PLTV Y
Sbjct: 6 KVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK A G IP + +RE E+E LV R+IDRP+RPLFP GFY+E+ V+A VLS DG+
Sbjct: 64 QEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGE 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G++ +NP++DE+ +L+LV A T
Sbjct: 124 SEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATG 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A+E+SE + + AH + K + I LAEKA K + +
Sbjct: 184 NAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLDDLK 243
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKAV 352
+K+ L I A + TD S R A++ +D KA EE D +++ K
Sbjct: 244 KKLKKLIGKDIAAAYKLTDKS----ARSSAINA-ARDKAKAFFAEEGLDAQTVMAGIKLT 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R I+ EG R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 299 KKLEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP
Sbjct: 359 TKDAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ +FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 419 KEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG----- 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
K++ +++DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR
Sbjct: 474 --KEFAVISDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ +
Sbjct: 532 AHILGEMSKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDID 591
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + + + +E + + I+ E EVG IY G V ++ ++GAFV F GG+ GL+
Sbjct: 592 DEGIIKISSSDINQIEAAKKWILGIV-EEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 651 HVSEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
129PT]
gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
2336]
gi|123031253|sp|Q0I2T0.1|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037307|sp|B0UTJ5.1|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
Length = 713
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/697 (41%), Positives = 441/697 (63%), Gaps = 12/697 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+Q++A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM+E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A +AGK + ++ + +EKV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQIVIEAIKEFAAEAGKPRWDWTAPEANTILIEKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
++AE + + K R E +D I DV + E + S + + ++
Sbjct: 246 KSIAENRLGDAYR--ITEKQARYEQIDLIKADVITQVTAEDETISEGKIIDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+ R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRILRGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G T F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P ++FPY
Sbjct: 364 IDELTGEKTDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEED-------NFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATVRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ +++V+ +++ I E+EVG +YKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDKNAVQEVMSRIEDITA-EVEVGVVYKGKVTRLADFGAFVALVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
E V +VSD +++GQ++ ++ + D +G I+L++K ++
Sbjct: 656 ERVEKVSDYLAIGQEVIVKVLEIDRQGRIRLTMKELA 692
>gi|365836772|ref|ZP_09378159.1| polyribonucleotide nucleotidyltransferase [Hafnia alvei ATCC 51873]
gi|364563454|gb|EHM41263.1| polyribonucleotide nucleotidyltransferase [Hafnia alvei ATCC 51873]
Length = 704
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/708 (41%), Positives = 449/708 (63%), Gaps = 12/708 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + +E LA +AGK + E+ ++E
Sbjct: 181 GTEGAVLMVESEAQLLSEDQMLGAVVFGHDQQQVVIENIKALAAEAGKPRWEWTAPAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+V+ LAEA I + K R +D+I DV AL+ E + + + +
Sbjct: 241 ALHARVAALAEARIGDAYH--ITEKQARYAQIDQIKADVIAALQAEDESLNAGEIADVLG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SLEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P +
Sbjct: 359 ERDAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQ 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 419 DEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I+APR +PR+ T+K + + ++ +IG G++ R + +ETG I +
Sbjct: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDNEKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K S +A
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEASAPEQA 698
>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
Length = 709
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/704 (41%), Positives = 439/704 (62%), Gaps = 12/704 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFTKEAGKPRWDWVAPQPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + + K R E +D I DV + E + S + + ++
Sbjct: 246 KAIAEARLGDAYR--ITEKQLRYEQIDAIKADVIAQITAEDEGISEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 364 IDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+E G IYKG VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDSNAAKNVMGRIEEIVA-EVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
E V +VSD + VGQ+++++ + D +G I+L++K ++P+ E ++
Sbjct: 656 ERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699
>gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Kyrpidia tusciae DSM
2912]
gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Kyrpidia tusciae DSM
2912]
Length = 727
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 295/691 (42%), Positives = 432/691 (62%), Gaps = 12/691 (1%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 124
+G R + LETGK+A+ A AV + +T VL+TVT SK DF PLTV+Y+E+ +A G
Sbjct: 9 LGGRRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKDLDFFPLTVNYEERLYAVG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP +++REG P E+ +L R+IDRPIRPLFP GF +EVQV+A VLS D P+I
Sbjct: 69 KIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDCPPEIAGM 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
TSAAL +S IP+ GPI + +GR+ GQF+VNPT+ + SD++LV A +R +M++
Sbjct: 129 IGTSAALTISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDMHLVVAGSRSAVVMVEA 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
A E+ E ++ + H + ++ Q R+ ++ G++K +L E+ ++ V A
Sbjct: 189 GANEVPESEMLDAIMFGHEQLQPLIDLQERMRQEIGQEKIVPELHRPQEEIVQAVREFAT 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRI 364
++ P K R +A+ + ++ ++ E+ E + + + + + K +R I
Sbjct: 249 EKLKTAIRTP--EKLAREDAIRAVEEETQEHFAEQFPEGAADI-AEVLHDILKEEVRSAI 305
Query: 365 IAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV 424
+ EG+R DGR LDE+RPI CE G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 306 LNEGMRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLD 365
Query: 425 GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNS 484
+KRFM HY+FPPF + E +RR++GHG L E+AL V+P E +FPYT+R+ S
Sbjct: 366 LEESKRFMHHYNFPPFSVGEARPIRAPSRRDIGHGALGERALEPVIPSEEEFPYTIRLVS 425
Query: 485 EVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDIL 544
EV+ S+GSTS A++CG ++ALMDAG+P++ VAGV++GLV E D ILTDI
Sbjct: 426 EVLESNGSTSQASICGSTLALMDAGVPIKAPVAGVAMGLVKEGD-------RVAILTDIQ 478
Query: 545 GLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREIS 604
G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ DI+ LE AH+GR+ IL M I
Sbjct: 479 GMEDHLGDMDFKVAGTAAGVTALQMDIKIKGLTRDILASALEQAHRGRMFILGKMLEVIQ 538
Query: 605 APRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNR 663
PR Q +PR+ T++ D +R +IGP G + KI ++TG +I + DG + + A ++
Sbjct: 539 QPRQQLSPYAPRIITMRIHPDKIREVIGPGGRVINKIIDDTGVKIDIEQDGRIFIAAVDQ 598
Query: 664 SVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSR 723
E+ + ++ I+ E+EVG Y G VT V++YGAFVE G++GL+H+S+L+ E V R
Sbjct: 599 EAGERARKMIEGIVA-EVEVGHTYHGRVTRVEKYGAFVEILPGKEGLVHISQLADERVGR 657
Query: 724 VSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV VG ++ ++ D +G I LS + V
Sbjct: 658 TEDVVRVGDEIDVKVTEIDSQGRINLSRREV 688
>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
ATCC 19718]
gi|81584849|sp|Q82XT0.1|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
[Nitrosomonas europaea ATCC 19718]
Length = 708
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/707 (42%), Positives = 454/707 (64%), Gaps = 21/707 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTV 114
++ K+ G +T+ETG+IA+ A+GAV++ MD+T VL T V K +DF PLTV
Sbjct: 1 MKPIKKSITYGRHTLTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DYQEK ++ G IP ++ +REG P E+E L R+IDRPIRPLFP GFY+EVQV+A VLSSD
Sbjct: 61 DYQEKFYSAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ D DI A TSAAL+LS IP+ GP+G R+G I ++I+NPT +L S LNLV A
Sbjct: 121 TEIDADIPAMIGTSAALILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQLNLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T++ LM++ +A E+SE + + H + + ++ LA++AG +++ +
Sbjct: 181 TQKAVLMVESEADELSEDVMLGAVTYGHDQMQQVIDMINELADEAGVTAWDWQPAEQDLS 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQ----DVKKALEEECDEESLQVLPK 350
+EKV+ LAEA + F K R EA+++I Q ++K EE E++++ +
Sbjct: 241 LVEKVTQLAEADLRNAFR--LKQKSARVEAINEIWQRVFTELKVGTEEGPSEQAVREIGF 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A++ R++R I+ R+DGR VRPI G LP HGS+LF+RG+TQ L T
Sbjct: 299 ALEA---RIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAV 469
LG + Q++++L G ++RFMLHY+ PPF E G RVG RRE+GHG LA++ALLAV
Sbjct: 356 LGTARDEQKIDALQGDYSERFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALLAV 414
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+PP +F Y++RV SEV S+GS+SMA+VCGG ++LMDAG+PL+ HVAG+++GL+ E +
Sbjct: 415 IPPVEEFGYSMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGN- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A
Sbjct: 474 ------RFAVLTDILGDEDHLGDMDFKVAGTEHGITALQMDIKIQGITKEIMQVALLQAK 527
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GRL IL+ M++ + R ++PR+ K + + +R +IG GA+ R + EETG I
Sbjct: 528 EGRLHILEIMKQSLPIARESISVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTI 587
Query: 650 SVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+S DG++T+ + E+ ++++ I ++EVG IY+G V + ++GA V G+
Sbjct: 588 DISDDGSVTIACVSSEGGEQARKRIEDITA-DVEVGRIYEGTVLKLLDFGAIVSVLPGKD 646
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
GLLH+S++++E V V+D + GQ + ++ + D +G ++LS+KA S
Sbjct: 647 GLLHISQIANERVENVADHLKEGQTVRVKVLEADEKGRLRLSMKAAS 693
>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
JE062]
gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
JE062]
Length = 712
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 445/705 (63%), Gaps = 18/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + + E + G R + LETGK+AR A+GAV+ ETKVL+TV S+K +DF PLT
Sbjct: 1 MFDIHRVEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP + +REG P E E L R+IDRPIRPLF G+ +E QV+ +VLS
Sbjct: 61 VNYQEKAYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + PD++A SAAL +S +P+ GPIG R+G I G++++NPT+D++ ++L+LV A
Sbjct: 121 DLENAPDVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE+ + + H ++ I+LAEKA K+ +E L S+
Sbjct: 181 GTNDAVLMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELNLPDHSD 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPK 350
KV LA + A ++ +K ER A+D + V +AL EE E + V+
Sbjct: 241 -LFGKVQELANEELGAAYS--ITAKTERKNAVDAVKAKVVEALVTGEEGAPEAN--VISD 295
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
++R RI+ G R+DGR L VR I E G LP HGSSLF+RG+TQ + T
Sbjct: 296 LFKKAEAAIVRGRILDTGSRIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++ L G FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 356 LGTGEDEQFIDLLEGTKKATFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPML 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +DFPYTVRV SE+ S+GS+SMA+VCG S++LMDAG+PL+ VAG+++GL+ E
Sbjct: 416 PAHHDFPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKE---- 471
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + +L+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ LE A
Sbjct: 472 -GE--RFAVLSDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKG 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M + I+ R++ ++PR+ +K D +R +IG G + R+I E+TG +++
Sbjct: 529 GRVHILGEMAKAITEARSELGEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAKVN 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + + ++ L ++ I E EVG IY+G V ++GAFV F G + G
Sbjct: 589 IEDDGTVKVASSDGKAIKAALNWINS-IAAEPEVGVIYEGTVVKTVDFGAFVNFFGARDG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ V++V+DV+ G ++ ++ +G D RG ++LS+K V
Sbjct: 648 LVHISQLAPRKVAKVTDVIKEGDKVFVKLMGFDERGKVRLSMKVV 692
>gi|392541172|ref|ZP_10288309.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
piscicida JCM 20779]
gi|409203899|ref|ZP_11232102.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
flavipulchra JG1]
Length = 708
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/704 (42%), Positives = 446/704 (63%), Gaps = 19/704 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTV 114
++ +EF++G +TLETG IAR A+GAV+ + +T VL TV + + +DF PLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGRREAAPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP +++REG P + E L R+IDRPIRPLFP GF +EVQV+A+V+S +
Sbjct: 61 NYQEKMYAAGRIPGGFLKREGRPSDGETLTARLIDRPIRPLFPDGFVNEVQVIATVVSVN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ PDI+A TSAAL +S IP+ GP+G R+G I GQ+++NPT+ EL S L+LV A
Sbjct: 121 PEIQPDIVALIGTSAALAISGIPFNGPLGAARVGFIDGQYVLNPTLKELETSKLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A ++E+++ + H ++ ++ +AGK ++
Sbjct: 181 TENAVLMVESEAEVLTEEEMLGAVVYGHEQSQAIIKAIEEFRAEAGKAAWDWTAPEKDLT 240
Query: 295 TLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE-ESL--QVLP 349
EKV+ +AE + + TD K R EAL + +V + L E E ESL QV+
Sbjct: 241 LAEKVAAIAEQKVGDAYRITD----KVARKEALSEAKAEVIEKLGAEVAEGESLDEQVVG 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
K ++ K+++R RIIA R+DGR+ D VR + +G LP HGS++F+RG+TQ L T
Sbjct: 297 KTFSSLEKKIVRSRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG +AQ L+ L G FMLHY+FPPFC+ E G RRE+GHG LA++ + AV
Sbjct: 357 TLGTERDAQMLDDLTGTHKHHFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAV 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P +FPY+VRV SE+ S+GS+SMA+VCG S+ALM+AG+P++ VAG+++GLV E
Sbjct: 417 MPTLAEFPYSVRVVSEITESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKE--- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A
Sbjct: 474 --GE--DFVVLSDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITKEIMQIALRQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL M++ ISAP + +PR+ T+K + +IG GA R++ EET I
Sbjct: 530 AARLHILGVMDQAISAPSEELSEFAPRIYTMKIPAKKIAEVIGKGGATIRQLTEETDTTI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A N + + + +++ + E+EVG +Y G V + ++GAFV G+
Sbjct: 590 EIEDDGTIKIAATNGNSAQAAISRIEALTA-ELEVGTLYTGKVIRIVDFGAFVNVLPGKD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GL+H+S++S E V+ VSD ++VGQ++ ++ + D +G ++LS+K
Sbjct: 649 GLVHISQISEERVNNVSDHLTVGQEVKVKVLEVDRQGRVRLSIK 692
>gi|374328865|ref|YP_005079049.1| polynucleotide phosphorylase/polyadenylase [Pseudovibrio sp.
FO-BEG1]
gi|359341652|gb|AEV35026.1| polynucleotide phosphorylase/polyadenylase [Pseudovibrio sp.
FO-BEG1]
Length = 716
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 445/705 (63%), Gaps = 18/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + + E + G R + LETGK+AR A+GAV+ ETKVL+TV S+K +DF PLT
Sbjct: 1 MFDIHRVEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP + +REG P E E L R+IDRPIRPLF G+ +E QV+ +VLS
Sbjct: 61 VNYQEKAYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + PD++A SAAL +S +P+ GPIG R+G I G++++NPT+D++ ++L+LV A
Sbjct: 121 DLENAPDVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE+ + + H ++ I+LAEKA K+ +E L S+
Sbjct: 181 GTNDAVLMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELNLPDHSD 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPK 350
KV LA + A ++ +K ER A+D + V +AL EE E + V+
Sbjct: 241 -LFGKVQELANEELGAAYS--ITAKTERKNAVDAVKAKVVEALVTGEEGAPEAN--VISD 295
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
++R RI+ G R+DGR L VR I E G LP HGSSLF+RG+TQ + T
Sbjct: 296 LFKKAEAAIVRGRILDTGSRIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++ L G FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 356 LGTGEDEQFIDLLEGTKKATFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPML 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +DFPYTVRV SE+ S+GS+SMA+VCG S++LMDAG+PL+ VAG+++GL+ E
Sbjct: 416 PAHHDFPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKE---- 471
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + +L+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ LE A
Sbjct: 472 -GE--RFAVLSDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKG 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M + I+ R++ ++PR+ +K D +R +IG G + R+I E+TG +++
Sbjct: 529 GRVHILGEMAKAITEARSELGEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAKVN 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + + ++ L ++ I E EVG IY+G V ++GAFV F G + G
Sbjct: 589 IEDDGTVKVASSDGKAIKAALNWINS-IAAEPEVGVIYEGTVVKTVDFGAFVNFFGARDG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ V++V+DV+ G ++ ++ +G D RG ++LS+K V
Sbjct: 648 LVHISQLAPRKVAKVTDVIKEGDKVFVKLMGFDERGKVRLSMKVV 692
>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
SCF1]
gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
SCF1]
Length = 711
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 442/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL +S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTPEELKVSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSEAYRITD----KQERYAQVDVIKSETIDTLVAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ ++G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQIIDEIMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TMEQFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILSVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + + Q++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMNQEVPVKVLEVDRQGRIRLSIK 690
>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris TIE-1]
gi|226702683|sp|B3QAB0.1|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris TIE-1]
Length = 722
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/700 (42%), Positives = 440/700 (62%), Gaps = 21/700 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGK+AR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + D
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PD++A A SAAL LS +P+ GPIG R+G I ++++NP +DE++ + L LV A T +
Sbjct: 126 PDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE+ + + H ++ I LAEKA K+ +E L+++ + +EK
Sbjct: 186 VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRE--LTVVDDSEIEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTV 355
+ L E + A + P K +R A+ K+ + E E L A +
Sbjct: 244 EMLGLVEQELRAAYAIPV--KQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR VR I + G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE
Sbjct: 422 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE-- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR+ I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + + R + ++PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + ++ ++ + I + E+G IY+G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGESIKAAIKWIKS-IASDPEIGEIYEGTVVKVMEFGAFVNFFGAKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+L+ V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 654 QLAAGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|397660147|ref|YP_006500849.1| Polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca E718]
gi|394348219|gb|AFN34340.1| Polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca E718]
Length = 712
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAVLAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDEALDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|423105041|ref|ZP_17092743.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5242]
gi|376381807|gb|EHS94543.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5242]
Length = 712
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 441/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIATLVAEDEALDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 TIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGDKAQHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|387769310|ref|ZP_10125574.1| polyribonucleotide nucleotidyltransferase [Pasteurella bettyae CCUG
2042]
gi|386906943|gb|EIJ71664.1| polyribonucleotide nucleotidyltransferase [Pasteurella bettyae CCUG
2042]
Length = 712
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 442/701 (63%), Gaps = 13/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF +E+Q++A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQITP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMTEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E A +AGK + ++ + +V
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAAEAGKARWDWVAPEPDTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AE+ + + K R E +D + +V + E +E S + ++ ++
Sbjct: 246 KAIAESRLGDAYR--ITEKQVRYEQIDALKAEVIAQITAENEEVSEGKIIDIFTSLESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L G F+ HY+FPP+ + E G+ RRE+GHG LA++ + AV+P ++FPY
Sbjct: 364 LDELTGERQDTFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVAAVMPSISEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEED-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ ISAPR + +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAISAPRAEISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + S +++V+ +++ I E+E G IY G VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDGSAVKQVMARIEEITA-EVETGAIYTGKVTRLADFGAFVAILGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD ++VGQ++ ++ + D +G I+L++K ++P+ E
Sbjct: 656 ERVEKVSDYLAVGQEVQVKVVEIDRQGRIRLTMK-LAPKAE 695
>gi|398310762|ref|ZP_10514236.1| polynucleotide phosphorylase/polyadenylase [Bacillus mojavensis
RO-H-1]
Length = 705
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/689 (42%), Positives = 439/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QF++NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDNQFVINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E KL I E+ EKV LAE +
Sbjct: 195 EVPEETMLEAIMFGHDEIKRLIAFQEEIVAAVGKEKSEIKLYEIDEELNEKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A+ ++ V EE E DEE+++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAITEVKNTVVAKFEEDEHDEETIKQVKQILSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + S
Sbjct: 546 RKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTVESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ + V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALDRVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 705
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 295/689 (42%), Positives = 440/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI QFI+NPT+D+L SD+NLV A T++ M++ A
Sbjct: 135 SLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E L I E+ +KV LAE +
Sbjct: 195 EVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIALYEIDEELSDKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V E EE DE++++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNTVVAKFEDEEHDEDTIKQVKQILSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +S
Sbjct: 486 EDALGDMDFKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAQKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|406942173|gb|EKD74471.1| hypothetical protein ACD_44C00432G0005 [uncultured bacterium]
Length = 698
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/696 (43%), Positives = 441/696 (63%), Gaps = 16/696 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
F+ G+ +T ETG+IA+ A AV + MD+T VL TV S +DF PLTV YQE+ +A
Sbjct: 8 FQYGAHTVTFETGEIAKQATAAVTVKMDDTVVLVTVVVSAKVGTQDFFPLTVVYQERSYA 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP Y +REG P E+E L R+IDRP+RPLFP GF +EVQ++A+VLS+D DPD+
Sbjct: 68 AGRIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPEGFNNEVQIIATVLSADKNVDPDVP 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A S AL LS IP+GGPIG RIG I G +++NP+ +L S L+LV A T + LM+
Sbjct: 128 AMLGASCALYLSGIPFGGPIGAARIGYIDGAYVLNPSSTQLQQSALDLVVAGTDKAVLMV 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ QA+E+SE+ + + L H + ++ +LAE AG+ ++ E KVS L
Sbjct: 188 ESQAKELSEEVMLGAVLLGHEKMQTAIDAIKKLAETAGRGTWLWEALAHDEALKTKVSEL 247
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE---ECDEESLQV--LPKAVDTVRK 357
E + F K RGE L ++ + KAL + + E++ QV + K V +
Sbjct: 248 IEKPLHDAFQ--IQEKASRGEKLGELKERAVKALVDTNLDMAEQAKQVETIKKIVSDLEY 305
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+V+R+R++ RVDGR VRPI + LP HGS+LF+RG+TQ L VTLG +A
Sbjct: 306 QVLRERVLQGLPRVDGRDTKTVRPITIRTNVLPRTHGSALFTRGETQALVVVTLGTGRDA 365
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q +++L G FM HY+FPP+ + E+G+ RRE+GHG LA++A+LA+LP + F
Sbjct: 366 QMIDALEGEMKDSFMFHYNFPPYSVGEIGQVGSPKRREIGHGRLAKRAILALLPSQEAFS 425
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
Y +RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE +
Sbjct: 426 YVMRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAAVAGIAMGLVKE-----GE--KF 478
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +GRL IL+
Sbjct: 479 VVLSDILGDEDHLGDMDFKVAGTSAGVTALQMDIKINGITAEIMKLALAQAKEGRLHILN 538
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTL 656
M + + APR +PR+ T+K + + +R +IG G++ R + EETG I V+ DG +
Sbjct: 539 IMNQALPAPRENMSDFAPRIITIKINPEKIRDVIGKGGSVIRALTEETGATIEVTDDGIV 598
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + +R E+ ++ I E+EVG IY+G VT + E+GAF+ G+ GLLH+S++
Sbjct: 599 KIASVDREAGEEACRRIKQITA-EVEVGKIYEGTVTKIVEFGAFINLLPGKDGLLHISQI 657
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ + V+ V+DV+S GQ + ++ + D +G +KLS+K
Sbjct: 658 TQQRVANVNDVLSEGQVVRVKVLDVDRQGKVKLSMK 693
>gi|402817503|ref|ZP_10867091.1| polyribonucleotide nucleotidyltransferase Pnp [Paenibacillus alvei
DSM 29]
gi|402505025|gb|EJW15552.1| polyribonucleotide nucleotidyltransferase Pnp [Paenibacillus alvei
DSM 29]
Length = 734
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/697 (42%), Positives = 434/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E E+G R + LETG++A+ AN AV + +T VL TVT+SK DF PLTV+Y+E+ +
Sbjct: 5 EMELGGRTLILETGRLAKQANAAVKVEYGDTVVLCTVTASKEPKDLDFFPLTVNYEERLY 64
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+IDRPIRPLFP GF ++VQ++ V+S D P+I
Sbjct: 65 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNDVQIVDLVMSVDQDCPPEI 124
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GRI GQFI+NPT+++ SD++LV A T++ +M
Sbjct: 125 AAMIGTSAALTVSDVPFNGPIGGVIVGRIDGQFIINPTVEQEEKSDIHLVVAGTKDAIMM 184
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E + + H E K + A AG K E KL + V
Sbjct: 185 VEAEANEVPESVMLEAIMFGHEEIKKIVAKIEEFAAIAGTSKMEVKLHAVDTDVNAAVRA 244
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE---ECDEESLQVLPKAVDTVRKR 358
A+ + P K R +A+D I Q+ E+ E E V D V++
Sbjct: 245 FAQERLVEAIRIP--EKHARQDAIDAINQEAVAHFEQLYVETPENMSDVNETLYDIVKEE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
V R+ I + VR DGRQL+E+RPI C++G LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 V-RRLITHDKVRPDGRQLEEIRPIDCDTGLLPRTHGSGLFTRGQTQALSICTLGALGDVQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ L +KRFM HY+FPPF + E RRE+GHG L E+AL V+PPE++FPY
Sbjct: 362 ILDGLGLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESEFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GL+ + GE +
Sbjct: 422 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKD-----GE--HFS 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ + L+ A GR+ IL
Sbjct: 475 ILSDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRSILTQALDQARAGRMHILGK 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR + +P++ T+ + D +R +IG G + KI EETG +I + DG +
Sbjct: 535 MNEVIQTPRESLSQYAPKILTMHINPDKIRDVIGAGGKVVNKIIEETGVKIDIEQDGRIF 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N E+ E ++ I+ +E+ VG +Y G V V+++GAFVE G++GL+H+S+LS
Sbjct: 595 IASTNAESNERAREIIEGIV-KEVVVGEVYTGTVKRVEKFGAFVEVLPGKEGLVHISQLS 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++ ++ + D +G I LS K +
Sbjct: 654 TERVAKVEDVVNIGDKIEVKVVEIDQQGRINLSRKVL 690
>gi|452752286|ref|ZP_21952029.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
JLT2015]
gi|451960362|gb|EMD82775.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
JLT2015]
Length = 793
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/708 (41%), Positives = 442/708 (62%), Gaps = 18/708 (2%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DF 109
T + K E + G +TLETG+IAR A+GAV+ + ET VL VT++K SV+ DF
Sbjct: 13 TDMFNIHKVETQWGGETLTLETGRIARQADGAVLATLGETVVLCAVTAAK--SVKEGQDF 70
Query: 110 LPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMAS 169
PLTV YQEK A G IP + +REG P E E L R+IDRPIRPLFP GFY+E+ V+
Sbjct: 71 FPLTVHYQEKFSAAGRIPGGFFKREGRPTEHETLTSRLIDRPIRPLFPEGFYNEINVICQ 130
Query: 170 VLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLN 229
V+S DG +PD++A A SAAL +S +P+ GPI R+G + G++++NP+ D L S L+
Sbjct: 131 VMSYDGVNEPDVLAMVAASAALTISGVPFMGPIACGRVGYVDGEYVLNPSRD-LEGSSLD 189
Query: 230 LVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLS 289
LV A T++ LM++ +A+E+ E + + AH ++ I LAEKA K E
Sbjct: 190 LVAAGTQDAVLMVESEAKELPEDIMLGAVMFAHEHGKGVIDAIIELAEKAAKDPWELDAV 249
Query: 290 MISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE--ECDEESLQV 347
LE + ++ + + + +K +R +A++ + + + E D
Sbjct: 250 EDKSAKLETLRSVIGDDLASAYK--ITNKSQRQDAVNAAREKARDHFADLKESDPAEYFG 307
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
K V + ++RK II + R+DGR LD+VRPI E LP HGS+LF+RG+TQ +C
Sbjct: 308 TLKLVKKLESDIVRKAIIKDKTRIDGRTLDQVRPIEAEVAVLPRTHGSALFTRGETQSIC 367
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
T TLG Q ++++ G + F+LHY+FPP+ + EVG+ RREVGHG LA +AL
Sbjct: 368 TTTLGTADSEQMIDAIYGVSHEHFLLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALH 427
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AVLP + +FPYT+RV S++ S+GS+SMATVCGGS+A+MDAG+PL+ V+G+++GL+ E
Sbjct: 428 AVLPSKEEFPYTIRVISDITESNGSSSMATVCGGSLAMMDAGVPLKRPVSGIAMGLILE- 486
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L+
Sbjct: 487 --DSGE---FAVLSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITEEIMRVALDQ 541
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR IL+ ME + R +++PR+ T+ D +R +IG G + R+I ETG
Sbjct: 542 AKGGRAHILERMEDALGGAREGVSKHAPRIETMTIPKDKIRDVIGTGGKVIREIVAETGA 601
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
++ + DGT+ + + N +E + + I+ E EVG IY G V S+ ++GAFV F G
Sbjct: 602 KVDIEDDGTIKISSSNGDEIEAAMNWIKGIV-EEPEVGHIYTGKVVSIVDFGAFVNFMGQ 660
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+SE+ +E V +V+DV+ GQ++ ++ + D RG ++LS++ V
Sbjct: 661 KDGLVHISEIKNERVGKVTDVLEEGQEVKVKVLAVDDRGKVRLSMRVV 708
>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
Length = 703
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/706 (42%), Positives = 455/706 (64%), Gaps = 21/706 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
K EIG R +TLETG++A+ A+G+V++ ++ VL T T+++ DFLPLT++YQE
Sbjct: 4 KLSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQE 63
Query: 119 KQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
+ +A G IP ++ RRE G P E E L RIIDRP+RPLF AG+ +E QV+A+VLS+D +
Sbjct: 64 RFYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEN 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DP++MA SAAL +S IP+ GP+ +R+G I G++++NP +D+ S L+L+ A T +
Sbjct: 124 DPELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSK 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ A + E ++ G+ AH ++ Q L ++ G+ K E + E
Sbjct: 184 AVVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKEVGRPKMEVAPPPVDEDLRT 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-------ECDEES-LQVLP 349
+V +LA A + V + + K RGEA + + V LE E D ES L+
Sbjct: 244 RVESLAAAEMTEVIS--TADKKARGEAAHNLQERVLATLEADLVANTPEADLESKLKEAK 301
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ ++K+++R+RI+ E R+D R+LDEVRPI E LP +HGS+LF+RG+TQVL +
Sbjct: 302 GLLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSA 361
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG+ + QR+ESL G K FMLHY+FPP+C+ EV G +RR++GHG LAE+A+ AV
Sbjct: 362 TLGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAIQAV 421
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + FPYT+RV SEV+ S+GS+SMATVCG S++LMDAG+P+++ V+G+++GL+ E
Sbjct: 422 LPDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKE--- 478
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK G+ +I+ + L A
Sbjct: 479 --GE--EVAILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAK 534
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL+ M++ + APR + ++P+L T+ + D +R +IGP G + R I + G +I
Sbjct: 535 DARLHILEKMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKI 594
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
V DG + + A N V ++V E V + E E+G IY G V + ++GAFV+ G
Sbjct: 595 DVEDDGKVKIFAPNGEVADQVRELV-LSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTD 653
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+SEL + V +V+DV+ G ++ ++ + D RG I+LS KAV
Sbjct: 654 GLVHISELENRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699
>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/693 (41%), Positives = 438/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + + + + + V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 RVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIK 690
>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
Length = 773
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/713 (41%), Positives = 440/713 (61%), Gaps = 17/713 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ T K E G + +TLETGK+AR A+GAV+ + ET VL VT++K +DF PLT
Sbjct: 1 MFNTKKVAIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V YQEK + G IP + +RE ERE L+ R+IDRPIRPLFP GFY+E+ +A VLS
Sbjct: 61 VHYQEKFSSAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNEINCIAQVLSY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DG+ +PDI+A A SAAL +S +P+ GPIG R+G G++ +NP+ E+ +L+LV A
Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + +M++ +A+E+SE+ + + AH + + +E I LAE+A K E + +
Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASGQVIEAIIDLAEQAAKDPWELNVGDDQK 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
++ L I A + TD K R AL + K A+ + +E L K
Sbjct: 241 AVKAELKKLVGKDITAAYKLTD----KQARQTALGEARAKAKAAMADRTPQEQLAA-AKL 295
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
V + ++R I+ +G R+DGR ++RPI E LP HGS+LF+RG+TQ + T TL
Sbjct: 296 VKKLEAEIVRTAILKDGRRIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTL 355
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G Q ++ L G + FMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP
Sbjct: 356 GTKDAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLP 415
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ +FPYT+RV S++ S+GS+SMATVCGGS++LMDAG+PL+ V+G+++GL+ E
Sbjct: 416 SKEEFPYTIRVTSDITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEG---- 471
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
KDY IL+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A G
Sbjct: 472 ---KDYAILSDILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKDG 528
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + + RT+ ++PR+ T+ D +R +IG G + R+I TG ++ +
Sbjct: 529 RAHILGEMNKALGETRTELSAHAPRIETMTIDKSKIRDVIGTGGKVIREIVATTGAKVDI 588
Query: 652 SD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
D G + + + + + +E + + I+ E EVG IY G V ++ ++GAFV F GG+ GL
Sbjct: 589 DDEGVIKISSSDSAQIEAAMNWIKGIV-EEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGL 647
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+HVSE+ +E V +VSDV+S GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 648 VHVSEIKNERVEKVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAELE 700
>gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
14365]
gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
14365]
Length = 711
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/707 (42%), Positives = 427/707 (60%), Gaps = 29/707 (4%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
+E +G + I +ETGK A+ A+G+VV+ +T VL T T+SK V DFLPLT +YQE
Sbjct: 5 RESVTVGDKEIIIETGKWAKQASGSVVVRCGDTMVLVTATASKSPRVGMDFLPLTCEYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K ++ G IP + RRE P E+LV R++DRP RPLFP + E Q++A+V+S D
Sbjct: 65 KTYSAGKIPGNFFRREARPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNA 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
D++A +S AL +SDIPW GP+ +R+GR+ G+F+ PT +E SD++++ + +R+
Sbjct: 125 ADVLAMTGSSCALHISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDIDMIVSASRDA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ RE+ E+ L L AH ++ Q +L GK+K+ ++ + L K
Sbjct: 185 IVMVEGGMREVPEQVLIDALLFAHEAVQPLIDLQEKLRAAVGKEKRPFEAPSFDQDLLAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL------EEECDEESLQV----- 347
V A + F K R AL DV++AL +E E++
Sbjct: 245 VQESAWERVREAFE--VREKHSRSAAL----SDVRRALVGELCGAQENATEAVYAGREDE 298
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ +A + V+KR R + R+DGR DE+R I CE G LP HGS+LF+RG+TQ L
Sbjct: 299 VSEAYEKVKKRFARLNTLDSKHRIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALV 358
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
+ T+G + Q+L++L+G K F LHY+FPPFC E +RRE+GHG LAE+++
Sbjct: 359 SATMGTRYDEQKLDTLLGGMQKPFFLHYNFPPFCTGEAKPIRSTSRRELGHGNLAERSIA 418
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
V+P DFPYTVRV SE++ S+GS+SMA+VCG S++LMDAG+P+ VAG+++GL+ E
Sbjct: 419 QVMPEREDFPYTVRVVSEILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMME- 477
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
GE Y IL+DILG EDH+GDMDFK+ GT GV A+Q+DIK G+ DI+ E LE
Sbjct: 478 ----GE--RYAILSDILGDEDHMGDMDFKVTGTARGVCALQMDIKLKGLTRDILVEALEQ 531
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GR+ ILD M + PR N+PR+ T D +R +IGP G R I E+TG
Sbjct: 532 ARRGRMHILDKMAEALQTPREDLSPNAPRIVTETVKPDKIRDIIGPGGKTIRAIAEQTGA 591
Query: 648 RISVSDGTLTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I VSD + +A + S + + +D I G E EVG Y GVV + E+GAFVE
Sbjct: 592 KIDVSDAGVVSIASSDS--RSLQQAIDIIRGLTMEPEVGQFYGGVVKRIVEFGAFVEILP 649
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
G GL+H+SELS E V RV DV+ G+++ ++CI D G I+LSLK
Sbjct: 650 GTDGLVHISELSSERVRRVEDVIQEGEEIVVKCISVDRDGKIRLSLK 696
>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81418115|sp|Q7MYZ0.1|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) (PNPase) (CAP87K) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 709
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 295/726 (40%), Positives = 457/726 (62%), Gaps = 19/726 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+L +F+ G + +ETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G +P ++ RREG P E E LV R+IDRP+RPLFP GF +EVQ++A+V+S
Sbjct: 61 VNYQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SA L LS IP+ GPIG R+G I Q+++NPT DEL S L+LV +
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A ++E+ + + H + ++ LA +AGK+K + +++
Sbjct: 181 GTAGAVLMVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V+ LAE + + K ER +D I ++V AL E+ + + + +
Sbjct: 241 ALHDRVAGLAEDRLGDAYR--ITEKQERYAQVDAIKEEVTAALLEQDEALEEAEIHEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K+V+R R++ R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SLEKKVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ + AV+P
Sbjct: 359 ERDAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+ G++A+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I++PR +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 532 HILSVMEQAINSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGEKAKHAISRIEEITA-EIEVARIYTGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPV 772
+S+++ + V +V+D + VGQ++S++ + D +G ++LS+K EA V GV+ PV
Sbjct: 651 ISQIADKRVEKVADYLQVGQEVSVKVLEIDRQGRVRLSIK------EATV-GVIVEDTPV 703
Query: 773 NKQATD 778
Q+ +
Sbjct: 704 APQSAE 709
>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/700 (41%), Positives = 444/700 (63%), Gaps = 19/700 (2%)
Query: 62 EFEIGSRL--ITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQE 118
E +GS I LETG A+ NG++ ET VL T V S K DF PLTV+Y E
Sbjct: 9 EIRLGSNAEPIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVNYIE 68
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K ++ G IP +++RE P ++E L+ R+IDRP+RP+FP GF +EVQ++A+V+SSD K
Sbjct: 69 KFYSVGKIPGGFLKRESKPSDKETLIARLIDRPLRPIFPDGFRNEVQIVATVVSSDQKNS 128
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PD+++ NA SAALM+SDIP+ GP+G +R+G++ G++I+NP + +N+V A T +
Sbjct: 129 PDVLSINAASAALMISDIPFNGPVGAVRVGKLNGEYIINPDAELFDQLVMNIVLAGTEDA 188
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +SE+++ H + + Q ++ E+ G K EYK + LEK
Sbjct: 189 IVMVEAGLKNVSEEEVVEAFEKGHQAIREIIAVQKKMREELGLPKAEYKDFSVPADILEK 248
Query: 299 V-SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV---LPKAVDT 354
V + ++ +AV T K E+ +A++++ + + L+ E E QV +A
Sbjct: 249 VYAECKQSLFDAVMTK---GKKEKYDAIERVKDEYFEKLKTELGEAFDQVESLYSEAYHE 305
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V K++ R+ + +RVDGR+ DE+RPI E G LP HGS+LF+RG+TQ L + TLG
Sbjct: 306 VEKKIFREITLENKIRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTK 365
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
++Q ++ + G +KRFMLHY+FPPF + EVG+ RREVGHG LAE+AL V+P E+
Sbjct: 366 MDSQLVDDIEGNSSKRFMLHYNFPPFSVGEVGRMGAPGRREVGHGALAERALSFVIPDES 425
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+RV SE++ S+GS+SMATVCGG ++LMDAG+P+++ VAG+++GL+ E G
Sbjct: 426 DFPYTIRVVSEILESNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYE----KGR- 480
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y IL+DI+G+EDHLGDMDFK+AGT+ G+TA+Q+DIK G+ +D++ E L A GRL
Sbjct: 481 --YAILSDIMGIEDHLGDMDFKVAGTKDGITALQMDIKIEGLSMDLVREALAAARVGRLH 538
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL M+ +++PR +PR T+ D + + +IGP G + I EETG I + D
Sbjct: 539 ILSKMQEVLASPRPDLSPYAPRFVTINVDPEKVGLIIGPAGKNIKAIIEETGVSIDILDG 598
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + + A ++ ++ + ++ I+G E+ + +YKG V + +YGAFVE G + LLHV
Sbjct: 599 GVVNIFASSKDSIDSAISMIEAILG-ELTIDKVYKGKVKKLMDYGAFVEIAPGIEALLHV 657
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
S+ S E V +S + +G + ++ +G+D RG K+S KA
Sbjct: 658 SQYSFEKVDDLSKYLKIGDVVEVKYLGKDERGRHKISRKA 697
>gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
128-5-R1-1]
gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
128-5-R1-1]
Length = 708
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/705 (43%), Positives = 448/705 (63%), Gaps = 18/705 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVL-STVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
I + I++ETG A+ ANGAV++ ET+V + V SS+ DFLPLTV+Y+EK +A
Sbjct: 15 IDGKEISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREKTYAY 74
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP +++REG P RE+LV R+IDRPIRPLFP GF+++V + A LS+D K DPD++A
Sbjct: 75 GKIPGGFVKREGKPSNREILVSRLIDRPIRPLFPKGFHNDVIITAMTLSADDKNDPDVLA 134
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
SAALM+S+ P+ GPI +R+ R+ G+FI NPT +E SD+++V A T++ +M++
Sbjct: 135 ITGVSAALMISEAPFEGPIAGVRVARVDGKFIANPTYEERDKSDMDIVVAGTKDAIVMVE 194
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
+ E+ E+++ + AH + ++ QI L +K GK+K + I E+ E +
Sbjct: 195 GGSEEVPEEEILEAIMFAHEHIKQLIDFQIELQKKVGKEKIVVEKDEIEEKLKEDLEKYR 254
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRK 362
+ EA K ER + +D I +KA+EE E + V K + +++R+
Sbjct: 255 DEIFEAFKIQ---DKKERNKTIDSI---FEKAVEEIEIPEDILVKAKIIYKEFVSQLMRE 308
Query: 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLES 422
++ + R+DGR+ DE+RPI+ + G LP +HGS+LF+RG TQ L VTLGAP E Q ES
Sbjct: 309 KVFKDKTRIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQIEES 368
Query: 423 LVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+ KRFMLHY+FPPF + E +RRE+GHG LAE+AL ++P E DFPY +R
Sbjct: 369 IEEGEEKKRFMLHYNFPPFSVGEARPPRAPSRREIGHGALAERALEPLIPSEEDFPYVIR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE++ S+GSTSMATVC GS++L DAG+P+Q+HVAG+++GL+ E D +Y ILT
Sbjct: 429 VVSEILESNGSTSMATVCAGSLSLFDAGVPMQKHVAGIAMGLLKEED-------EYIILT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTAIQ+DIK G+ +I+ + L+ A K R ILD M
Sbjct: 482 DILGDEDHLGDMDFKVAGTRDGVTAIQMDIKIKGLTKEILEKALQQARKARFHILDLMYE 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVA 660
I PR + + +P + ++ D + +IGP G +KI +ETG +I + DG + + A
Sbjct: 542 AIPQPRPEVSKYAPSVVKIRVLPDKIPLIIGPSGKNIKKIIDETGVKIDIEPDGLVKIYA 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ +K ++ +D ++ +IE G I+ G VT V++YGAFVE G+ LLHVS+++ E
Sbjct: 602 VNKEAADKAVKMIDELV-MDIEKGDIFLGKVTRVEDYGAFVELMPGRLSLLHVSQITGER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGV 765
+ D +SVG L ++ I D +G +K+SLK V EA K +
Sbjct: 661 LRSAKDKISVGDILKVKVIDIDEQGRVKVSLKDVKESDEAKNKDI 705
>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/693 (41%), Positives = 438/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + + + + + V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 RVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIK 690
>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
AAC00-1]
gi|187470931|sp|A1TLL2.1|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
Length = 758
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 444/702 (63%), Gaps = 14/702 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G + + +ETG+IAR A GAV++ +D+T VL+TV +SK +DF PLTVDY EK +
Sbjct: 11 FQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GFY+EV V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A A SAAL +S IP+ GPIG R+G I G++++NP S ++LV A T LM
Sbjct: 131 AAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE + + H + + L AGK +++ + E + KV+
Sbjct: 191 VESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAKDEPFIAKVTQ 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVDTVRKRVI 360
LAE + A + SK R +AL + V ++L+ E D ++++V D + +++
Sbjct: 251 LAEEKLRAAYQ--IRSKQARTQALREASASVLESLKAEGADFDAVKVEALLFD-IEAKIV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR+
Sbjct: 308 RSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G RFM HY+ PPF EVG+ RRE+GHG LA++AL+AVLP + +FPYT+
Sbjct: 368 DALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEEFPYTI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------RFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + RL IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ +T+ +P+L T+K + + +R +IG GA+ R + EETG +I++ DGT+T+
Sbjct: 541 EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + ++ +++ I E+E+G IY+G V + ++GA + G+ GLLH+S+++HE
Sbjct: 601 STDSAKADEAKRRIEQITA-EVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
V +V+D ++ GQ + ++ + D +G +KLS++A+ RP D
Sbjct: 660 RVEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGD 701
>gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus
DSM 2379]
gi|187610304|sp|A1AMM6.1|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus
DSM 2379]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/693 (41%), Positives = 428/693 (61%), Gaps = 13/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+ E G +++T+ TGK+A+ ANGAVV+ +T VL T + K +DF PLTV+Y EK
Sbjct: 6 DVEFGGKMVTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYTEKA 65
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RRE P + E L R+IDRPIRPLFP F ++ Q++A+V+S+D DP
Sbjct: 66 YAGGKIPGSFFRREARPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDHDPR 125
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ SAAL +SDIP+ GPI +++GR+ G+ I NPT DEL LSD+ +V A +R+ +
Sbjct: 126 ILSMLGASAALEVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDMEIVVAASRDAII 185
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +AR +SE D+ + H LE Q +L + AG K++ ++ + L +V
Sbjct: 186 MVEGEARFVSEDDMLDAIFFGHAAVQPVLEAQEKLKQLAGVAKRDVPPPVVDQALLARVR 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA + A SK ER +D I + +L E + Q+ D + +
Sbjct: 246 ELASERMSAAVK--IKSKQERHNQIDLITAETTASLAAEFEGNEKQIRAFLGD-LEYECV 302
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R ++ GVR+DGR +RPI E+G LP HGS+LF+RG+TQ L TLG ++ QR+
Sbjct: 303 RADVLNSGVRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSSDEQRM 362
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SL G KRF+LHY+FPPF + E R+G RRE+GHG LAE+AL A+LP +DFPYT+
Sbjct: 363 DSLYGEYRKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALSAILPKHDDFPYTI 422
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SE + S+GS+SMA VCGG M+LMDAG+P+ VAG+++GL+ E GE IL
Sbjct: 423 RIVSETLESNGSSSMAAVCGGCMSLMDAGVPISAPVAGIAMGLIKE-----GE--KVAIL 475
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK G+ +I+ + L A +GRL IL M
Sbjct: 476 SDILGDEDHLGDMDFKVAGSSDGITALQMDIKIGGVTREIMQKALAQAREGRLHILGKMA 535
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ APR + +PR+ T+ D +R +IG G R I E TG + + D G + +
Sbjct: 536 ETLGAPRPEMSSFAPRITTIWVKTDKIRDVIGTGGKNIRNITETTGVTVDIEDTGRINIA 595
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ ++ + ++ + + E E G +Y G+V + ++GAFVE G GL+H+SEL +
Sbjct: 596 STSKEACDLAIQMIRGLTD-EAEEGKLYMGIVKKIMDFGAFVEILPGTDGLVHISELDTK 654
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V V++V++ G ++ ++CIG D G +KLS K
Sbjct: 655 RVKTVTEVLNEGDRVLVKCIGVDKNGKVKLSRK 687
>gi|354725366|ref|ZP_09039581.1| polynucleotide phosphorylase/polyadenylase [Enterobacter mori LMG
25706]
Length = 710
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 442/702 (62%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT +EL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LA A + + TD K ER +D I + L E + L +
Sbjct: 241 ALNARVAALAGARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDESLDANELSEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K +R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFARGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 EADKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/728 (42%), Positives = 453/728 (62%), Gaps = 31/728 (4%)
Query: 57 ETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDY 116
+ + E ++ R + LE GK A+ A+G+V++ +T VL+T +S+ DFLPLTV++
Sbjct: 10 QAHRYETQVAGRPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIEADFLPLTVEF 69
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
+E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQV+ +VLS+D K
Sbjct: 70 EERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQK 129
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
PDI+ A SAALMLSDIPW GP+ +R+G I GQF++NPT+ ELS S L+LV A +R
Sbjct: 130 NPPDILGPTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSESALDLVVAGSR 189
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISEQT 295
+ LM++ A+E+ E+ L L AH E L+ Q +A GK K + +SE+
Sbjct: 190 DAILMVEAGAQEVDEEMLVQALEFAHREMQPILDLQEEIARALGKPKMAWTPPEALSEEE 249
Query: 296 LEKVSNLA-EAHIEAVFTDPSYSKFERGEALDK-----IGQDVKKALEEECDEESLQVLP 349
E LA E + AV + SK ER AL+ + + + K + DE +
Sbjct: 250 KEAFYRLAVERGLSAVLQ--TASKGERSRALEAFAEALVAEALPKGEDGTPDESKKPLYE 307
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A V ++ +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL TV
Sbjct: 308 SAFAEVVRKELRRLVLEEGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTV 367
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++ L T++F++HY+FPPF EV + G++RRE+GHG LA++AL AV
Sbjct: 368 TLGTGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLAKRALKAV 427
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LPPE FPYT+RV +V+ S+GS+SMATVC G +ALMDAG+PL+ VAGV++GLV E +
Sbjct: 428 LPPEEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGER 487
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L A
Sbjct: 488 AV-------ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALMQAR 540
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+ R++ILD ME + APR + +PR+ +LK + + +IGP G R + EE G +
Sbjct: 541 EARMKILDLMESVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEV 599
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + + + +K ++++ + E +VG IY+G VT + +GAFV G +
Sbjct: 600 DIEEDGTVRIYSSDMEAAQKAKKRIEELT-LEAKVGEIYEGTVTKITPFGAFVSLFPGTE 658
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEG 768
GLLH+S+++ V RV D + VG + ++ D RG I L RPE +EG
Sbjct: 659 GLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------LEG 706
Query: 769 SVPVNKQA 776
+P +++
Sbjct: 707 KIPPRRRS 714
>gi|395767092|ref|ZP_10447629.1| polyribonucleotide nucleotidyltransferase [Bartonella doshiae NCTC
12862]
gi|395414851|gb|EJF81288.1| polyribonucleotide nucleotidyltransferase [Bartonella doshiae NCTC
12862]
Length = 734
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/710 (42%), Positives = 439/710 (61%), Gaps = 24/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGKIPGGYFKRENRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI R+G GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFMGPIAGARVGYCNGQYILNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A E+ E + + H ++ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAHELPEDIMLGAVMFGHKGLQPVIDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQ 346
+ + LE +AE +I +T K ER A+D + ++ EE+C + Q
Sbjct: 241 LEKSMLE----MAEQNIRKAYT--ITDKQERYAAIDALKTEIINKFMPETEEDCKFTADQ 294
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ ++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 295 I-ATVFKKLQAKIVRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAI 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +AL
Sbjct: 354 VVATLGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAL 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 414 HPMLPTKEAFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
+ + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 SE-------RFAILSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALE 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR+ IL+ M + +++ RT+ SPR+ + D +R +IG G + R+I E+TG
Sbjct: 527 QAKGGRIHILNQMAKALTSARTELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTG 586
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ DGT+ + + + +E + I+ E EVG IY+G V E+GAFV F G
Sbjct: 587 AKINIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGVIYQGTVVKTAEFGAFVNFFG 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
+ GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V+
Sbjct: 646 SRDGLVHISQLASERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVN 695
>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
gi|187470932|sp|A1K7B5.1|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
Length = 699
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/699 (42%), Positives = 438/699 (62%), Gaps = 13/699 (1%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
K+ F G+ +TLETG++AR A GAV++ +D+T VL+TV ++K +DF PLTVDY
Sbjct: 5 IKKTFTYGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYV 64
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQV+ +VLS + +
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEV 124
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
D DI A A SAAL +S IP+ GPIG R+G GQ+++NPT+++L S LNLV A T
Sbjct: 125 DADIPAMIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVAGTAS 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A E+SE+ + + H + + L E AGK + ++ ++ +
Sbjct: 185 AVLMVESEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAANDALVA 244
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDTVR 356
+V LA A +E F SK R E L +I + AL + D S + T+
Sbjct: 245 RVKELALADVEEAFR--ITSKQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFTLE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+R RI+ R+DGR VRPI G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AGTVRSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRD 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++++ G +RFMLHY+FPPF E G+ RRE+GHG LA++AL+A+LP DF
Sbjct: 363 EQIIDAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGEDF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
YT+RV SE+ S+GS+SMA+VCGGS+ALMDAG+P+++HVAG+++GL+ + +
Sbjct: 423 SYTIRVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGN-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +GRL IL
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M+ + R + +PR+ +K + + +R +IG GA+ R ++EETG I + DG+
Sbjct: 536 KQMKDALGVARGEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGS 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+T+ + + +K +++ I E+EVG +Y+G V + ++GA V G+ GLLHVS+
Sbjct: 596 ITISSVSAEGAQKAKARIEDITA-EVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+++E V+ V D V GQ + ++ + D RG I+LS+KA+
Sbjct: 655 IANERVNNVGDYVKEGQAVRVKVLETDERGKIRLSMKAL 693
>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
succinogenes 130Z]
gi|187470960|sp|A6VR10.1|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
succinogenes 130Z]
Length = 707
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/701 (41%), Positives = 438/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V +V + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF +E+Q++A+V+S + + P
Sbjct: 66 SYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L ++AGK + ++ + +V
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKEAGKPRWDWVAPEPDTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AE+ + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KVIAESRLGDAYR--ITEKQVRYEQIDAIKADVIAQITAENEEVSEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L VTLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L G F+ HY+FPP+ + E G+ RRE+GHG LA++ + AV+P ++FPY
Sbjct: 364 LDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I+APR + +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIAAPRAEISEYAPRIYTMKIDPKKIKDVIGKGGATIRTLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + +++V+ +++ I E+E G +Y G VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAIDGNAVKEVMARIEEITA-EVEAGAVYTGKVTRLADFGAFVAILGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ + ++ + D +G I+L++K + + E
Sbjct: 656 ERVEKVSDYLQVGQDVQVKVVEIDRQGRIRLTMKDIVSKAE 696
>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
Length = 706
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/693 (41%), Positives = 439/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K +++ +++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAEVRLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+ + E G RRE+GHG LA++ ++AV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 RVEKVTDYLQMGQEVPVKVMEVDRQGRIRLSIK 690
>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
ATCC 19707]
gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
gi|123593842|sp|Q3J9C0.1|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
ATCC 19707]
gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
Length = 695
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/699 (42%), Positives = 442/699 (63%), Gaps = 13/699 (1%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
K+ E G R + LETG IAR A+GAVV+ ET VL TV K RDF PLTV+YQ
Sbjct: 4 IKKVIEYGDRSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQ 63
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
E+ +A G IP + +REG P E+E L R+IDRP+RPLFP F +EVQV+A+V+SSD +
Sbjct: 64 ERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSEN 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPDI + SAAL LS IP+ PI R+G I GQ+++NPT+ ++ S L+LV A T +
Sbjct: 124 DPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSALDLVVAGTEK 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E+ + + AH E ++ LAE+AGK ++K + E
Sbjct: 184 AVLMVESEAQELPEEIMLGSVMFAHQEMQVVIQAIRELAEEAGKPAWDWKPPIEEEDLKS 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVR 356
V + EA + + SK ER +L ++ + ++L EE S + + +A+ +
Sbjct: 244 AVQEVGEARAQEAYQ--IRSKQERQASLAELRNSIVESLVPEENSRWSREQVLEAIGALE 301
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
KR++R++I++ G R+DGR +RPI +G LP HGS+LF+RG+TQ L TLG +
Sbjct: 302 KRLVREQILSGGERIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERD 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
AQ ++++ G +RFMLHY+FPP+C+ E G RRE+GHG LA+++L V+P E F
Sbjct: 362 AQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNGVVPDEESF 421
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PY +RV SE+ S+GS+SMATVCG S++LMDAG+P++ VAG+++GL+ E D
Sbjct: 422 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKD-------R 474
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A +GR IL
Sbjct: 475 FAVLSDILGDEDHLGDMDFKVAGTEKGITALQMDIKIDGITEEIMRTALSQAREGRFYIL 534
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGT 655
M IS PR + +PR+ K + + +R +IG GA R + EETG I V DGT
Sbjct: 535 QKMNEIISTPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGT 594
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + +++ ++ +V+ I+ ++EVG IY+G V+ + ++GAFV G+ GLLH+S+
Sbjct: 595 VKIFSADKADGQEAKRRVEEIVS-DVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQ 653
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S E V VSD +S G + ++ + D +G ++LS+KA+
Sbjct: 654 ISAERVKNVSDKLSEGDVIRVKVLEVDKQGRVRLSVKAI 692
>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
Length = 710
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 446/702 (63%), Gaps = 27/702 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
++G+ + LETG++AR A+GAV++ ET VL TV ++ +DF PLTVDYQEK +
Sbjct: 13 MKLGAHELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLTVDYQEKTY 72
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E+LV R+IDRP+RPLFP GFY++VQ++A+VLSSD + D DI
Sbjct: 73 AAGKIPGGFFKREGRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSSDSEIDADI 132
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL +S IP+ GPIG ++G + G++++NPT +L S+L+LV A T++ LM
Sbjct: 133 PAIIGASAALSISGIPFYGPIGATKVGYVDGEYVINPTKTQLQESELDLVVAGTKDAVLM 192
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+E+SEK + + H A ++ A+ + K E+ +++ + K+S
Sbjct: 193 VESEAKELSEKVMLDAVLAGHKAAKDVIKLINDFAKDSAKDPWEWNAPEPNQELISKISK 252
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV--LPKAVDTVRKRV 359
LAE + F+ K ER + + +I V+ L E D +L+V + K + ++
Sbjct: 253 LAEKDLSKAFS--IKLKSERSQKISEIKDKVQAELITE-DMGTLEVNEVNKEFFNLEAKI 309
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R +I+ R+DGR VRPI + LP HGS+LF+RG+TQ L TLG P +AQ
Sbjct: 310 VRSKILDGEPRIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQI 369
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
+++L G T RFMLHY+FPPF E G+ RRE+GHG LA++ALLAVLP + DF YT
Sbjct: 370 IDALQGEYTDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALLAVLPEQEDFDYT 429
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR- 538
+R+ SE+M S+GS+SMA+VCGG MA++DAG+PL+ HVAG+++GL+ E D R
Sbjct: 430 IRLVSEIMESNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKE---------DNRV 480
Query: 539 -ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
ILTDILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ L+ A +GR ILD
Sbjct: 481 AILTDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITTEIMQVALKQAKEGREHILD 540
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLT 657
M++ + + RT+ + +PR+ TL D +R +IG GA+ + + EET I ++D L
Sbjct: 541 LMKKALKSSRTELSKYAPRIMTLNIHPDKIRDVIGKGGAVIKALTEETNTTIDITDDGLV 600
Query: 658 VVA-----KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
VA + + ++++ E I ++EV IY G V + ++GA V+ G+ GLLH
Sbjct: 601 KVACTSGEEGQLAIDRIKE-----ITADVEVDQIYDGKVVKILDFGAIVQLIPGKDGLLH 655
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+++HE V V D +S G ++ ++ I D +G +++S KA+
Sbjct: 656 ISQIAHERVKSVKDHLSEGDEVKVKVIEVDQKGKVRVSAKAL 697
>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase [Geobacillus kaustophilus HTA426]
gi|81347597|sp|Q5L0I2.1|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Geobacillus kaustophilus HTA426]
Length = 723
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/694 (42%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R + +ETG++A+ ANGA ++ +T VLST T+S+ DF PLTV+Y+E+ +A
Sbjct: 10 IDVAGRPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +LV R+IDRPIRPLF GF +EVQV++ V+S D P++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI + +GR+ GQF++NPT++++ SDL+LV A T++ M+
Sbjct: 130 ALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E + + Q +A + GK+K E L ++ L
Sbjct: 190 EAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQL 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AEA I+ P K R A++ + V E EE DEE L+ + + + + K +R
Sbjct: 250 AEADIKRAVQVP--EKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FPPF + E G G RRE+GHG L E+AL V+P E +FPYT+R
Sbjct: 368 GLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD-------HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ +I+ E L A KGRL+ILDHM +
Sbjct: 481 DIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+S PR + + +P++ + + D +R +IGP G KI +ETG +I + DGT+ + +
Sbjct: 541 TLSEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+
Sbjct: 601 VDEAANQKAKQIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGR 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 660 VGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|395787129|ref|ZP_10466730.1| polyribonucleotide nucleotidyltransferase [Bartonella birtlesii
LL-WM9]
gi|395411553|gb|EJF78074.1| polyribonucleotide nucleotidyltransferase [Bartonella birtlesii
LL-WM9]
Length = 733
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/718 (41%), Positives = 444/718 (61%), Gaps = 22/718 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKFYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+S S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMSESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC---DEESLQV 347
+ + LE +AE I +T K ER A+D + +V E E S +
Sbjct: 241 LEKAMLE----IAEQGIRKAYT--ITDKQERYAAIDALKTEVINKFTPETGGSSEFSAEQ 294
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++ +V+R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 295 IATVFKQLQAKVVRGNILDTGKRIDGRDLSTVRPIQSEVGLLPRTHGSALFTRGETQAMV 354
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +AL
Sbjct: 355 VATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALH 414
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL +AG+++GL+ E
Sbjct: 415 PMLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPIAGIAMGLIKE- 473
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 ----GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQ 527
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 528 AREGRIHILNEMAKALTSARAELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGA 587
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ + + + +E + I+ E E+G IY+G V E+GAFV F G
Sbjct: 588 KINIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEIGAIYQGTVVKTAEFGAFVNFFGS 646
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+ GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG ++LS+K ++ + ++ G
Sbjct: 647 RDGLVHISQLASERVTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKIINQQTGEEITG 704
>gi|167630367|ref|YP_001680866.1| polynucleotide phosphorylase [Heliobacterium modesticaldum Ice1]
gi|257096694|sp|B0THS2.1|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
modesticaldum Ice1]
Length = 709
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/694 (42%), Positives = 436/694 (62%), Gaps = 13/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQF 121
EI R +T+ETG++A+ A G+V+ +T VL T T SK DF PLTVDY+E+ +
Sbjct: 6 MEIAGRTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+IDRPIRPLFP GF ++VQV+A+V+S D PDI
Sbjct: 66 AVGKIPGGFIKREGRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPDI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+ S AL LSDIP+ GPIG + +GR+ G+ ++NPTM++ SD++LV A T++ +M
Sbjct: 126 VGMIGASCALSLSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSDMHLVVAGTKDAVMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A E+ E+D+ + H E + + Q + AGK K+E L I+ + + V
Sbjct: 186 VEAGANEVPEEDMIEAIMFGHQEIQRIVAFQEEMVAVAGKPKREVPLKQINPELEQAVRE 245
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
+ +P K R + + ++ +AL EE + +DT+ K ++R
Sbjct: 246 YVGDKLRNAIQNPD--KLSREADIQAVMKETVEALLPHFPEEEKDIR-TVLDTMEKEIVR 302
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
K I + R DGR++DE+RPI E G LP HGS LF+RG TQVL TLG A+ Q L+
Sbjct: 303 KLITVDKQRPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILD 362
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KR+M HY+FPP+ + E G RRE+GHG LAE+ALL V+P E++FPYT+R
Sbjct: 363 GLGVEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDEFPYTIR 422
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SE + S+GSTSMA+VCG +++LM+AG+P+++ VAG+++GL+ E GE + IL+
Sbjct: 423 LVSEAVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKE-----GE--HFSILS 475
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ + L+ A KGRL ILD M
Sbjct: 476 DIQGMEDHLGDMDFKVAGTADGVTALQMDIKIKGVNREILTQALQQARKGRLFILDKMLA 535
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I P + +PR+ T+ D D +R +IGP G + KI ETG +I + DG + + A
Sbjct: 536 VIDKPAAEMSPYAPRIITMSIDPDKIREVIGPGGKVINKIIAETGVKIDIEDDGRIFIAA 595
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ K + ++ I ++EVG +Y G VT + +GAFVE G++GL+H+S+L+ E
Sbjct: 596 TDTEAANKAVRIIESITA-DVEVGKVYTGKVTRIMNFGAFVEVLPGKEGLIHISQLAEER 654
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V++V DVV +G +++++ + D +G I LS K V
Sbjct: 655 VAKVEDVVKIGDEVTVKVVEIDKQGRINLSRKEV 688
>gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
Length = 701
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/697 (42%), Positives = 435/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + ETG++A+ AN AV++ ET VL TVT+S DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ G F+VNP + E SD+ LV A TR+ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTRDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E+ + + H E K + L GK+K KL ++E +V
Sbjct: 186 VEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNREVRE 245
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
AEA +EAV + ++ R +A+D I + EE+ E E L+ + + + + K
Sbjct: 246 FAEARLVEAVRIEEKHA---RQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR L E+RPI C++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E DFPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
ILTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ E L+ A +GR+ IL
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR + +P++ T++ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MAEAIQKPRETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N + +K L ++ I+ RE+ VG IY G V ++++GAFVE + GL+H+S+LS
Sbjct: 596 IASSNDEMNKKALSIIEGIV-REVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++++ D +G I LS KAV
Sbjct: 655 TERVAKVEDVVAIGDVITVKVTEIDQQGRINLSRKAV 691
>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
T-27]
gi|257096690|sp|C1A3Y1.1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
T-27]
Length = 732
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/701 (42%), Positives = 435/701 (62%), Gaps = 14/701 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E R + +ETG++A+ A G+ V+ ET VL+ VT S+ S F PLTV+Y+EK +
Sbjct: 5 ERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFPLTVEYKEKTY 64
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P + E+L RIIDR IRPLFP GF +EVQV V+S+D + D D+
Sbjct: 65 AAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADV 124
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A A S AL S IP+ GPI +R+GR+ G +++NPT +L SDL LV A +++ +M
Sbjct: 125 LALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSKDSIVM 184
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ + E+SE+D+ LRL+H + + Q L K K + + E +V
Sbjct: 185 VEGGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGITTRVKE 244
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA I K R EA+++ +++ + L E + + + + V +R
Sbjct: 245 LASGRIREALN--QKDKHTRIEAVERTKKELAEGLLVEFPDNAKDI-GNLLGDVEYHELR 301
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+++ +RVDGR+ DEVR I ++ LP HGS+LF+RG TQ L TLG +AQRL+
Sbjct: 302 SQVLDTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLD 361
Query: 422 SLVGPP--TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
S+ P T+ FMLHY+FPPF EV G +RRE+GHG LAE+AL VLP DFPYT
Sbjct: 362 SIKEPGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQGVLPDFADFPYT 421
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ S+V+ S+GS+SMA+VCGGS++L DAG+PL+ VAGV++GL+ E GE Y I
Sbjct: 422 IRIVSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKE-----GE--RYAI 474
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDHLGDMDFK+AGT+ G+T+IQ+DIK G+ + I+ E L A GRL IL M
Sbjct: 475 LTDILGTEDHLGDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEM 534
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
++ ++APR + +PR+ T++ D + LIGP G R I++ETG +SV DGT+T+
Sbjct: 535 DKALAAPREDLSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDGTVTI 594
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A ME+ + V I + VG Y+G V +V +GAFVE G + LLHVSE+
Sbjct: 595 AAVGGDSMERAKQMVMAITAEPV-VGETYEGTVKTVTAFGAFVEIMPGNEALLHVSEMRW 653
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V + DVV G +++++ + +D RG ++LS+KA+ P+PE
Sbjct: 654 ERVEKPEDVVKKGDRVTVKLVDRDERGRLRLSMKALLPKPE 694
>gi|451346958|ref|YP_007445589.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens IT-45]
gi|449850716|gb|AGF27708.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens IT-45]
Length = 707
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/689 (42%), Positives = 442/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI G+F++NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I E+ KV NLAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSAKVKNLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++++ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++ILD M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILDSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
ATCC 15444]
gi|123128295|sp|Q0BWM9.1|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
ATCC 15444]
Length = 713
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/698 (43%), Positives = 440/698 (63%), Gaps = 18/698 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQF 121
E R +T+ETG++AR A+GAV++ +T VL+T V + + +DF PLTV+YQEK F
Sbjct: 9 LEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLTVNYQEKYF 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLF GF HEVQV+ + LS D + D DI
Sbjct: 69 ASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLENDADI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A SAAL+LS P+ GPIG R+G GQ+I+NPT+ EL S+L+LV A T + +M
Sbjct: 129 IALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVAGTTDAVMM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ QA E+SE + + H ++ I LAEKA K+ Y+ S L+ V +
Sbjct: 189 VESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKEPFAYEPPDHS-AALKSVID 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR--- 358
A + + +K ER A+ K AL DE + P+ TV K
Sbjct: 248 TVGADLSKAYK--ITAKGERYAAIGAAKDKAKAALLG-TDEAPGVMTPEVFKTVFKEAEA 304
Query: 359 -VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R I+ G R+DGR+LD++RPI E+G LP HGSSLF+RG+TQ +C TLG +
Sbjct: 305 SVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDE 364
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L G ++FMLHY+FPP+ + E G+ G RRE+GHG LA +AL AVLP DFP
Sbjct: 365 QYIDGLDGTKKEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKHEDFP 424
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E ++
Sbjct: 425 YTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEG-------SEF 477
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI DI+ + LE A GR+ IL
Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHILG 537
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M + ++A R Q N+P++ +K D +R +IG G + R I +ETG ++++ DGT+
Sbjct: 538 EMGKALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAKVNIDDDGTV 597
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A +R ++ ++ + I E EVG IY+G V S+K++G FV F G + GL+HVS++
Sbjct: 598 QISAMDRKSIDAAIKMIKGITA-EAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVSQM 656
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+++ + ++V G ++ ++ +G D RG ++LS+K V
Sbjct: 657 ANKRIGHPKEMVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|383188462|ref|YP_005198590.1| polyribonucleotide nucleotidyltransferase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371586720|gb|AEX50450.1| polyribonucleotide nucleotidyltransferase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
Length = 707
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/698 (41%), Positives = 442/698 (63%), Gaps = 13/698 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T+ L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGTQGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + ++ L + GK K +++ ++ + +V+
Sbjct: 188 MVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNAELHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
L+E+ + + K ER ++ I DV +AL+ E + + + ++ K V+
Sbjct: 248 ALSESRLGDAYL--ITEKQERYNQINVIKADVVQALQAEDESLDAGEISDILGSIEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNL 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFPYTV
Sbjct: 366 DELMGEKTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE + +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--SFIVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QAISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGEKAKYAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
V +V+D + +GQ++ ++ + D +G ++LS+K A +P
Sbjct: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAP 695
>gi|418055354|ref|ZP_12693409.1| Polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans 1NES1]
gi|353210936|gb|EHB76337.1| Polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans 1NES1]
Length = 734
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/729 (41%), Positives = 448/729 (61%), Gaps = 33/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + + E + G R + LETG AR A+ AV+ +T VL+TV ++ SV+ DF P
Sbjct: 1 MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGAR--SVKPGIDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQE+ +A G IP Y +REG P E+E L R+IDRPIRPLF GF +E QV+ +V+
Sbjct: 59 LTVNYQERTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVM 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DPDI+ A SAAL LS +P+ GPIG R+G I G+ ++NP +DE+ S L+LV
Sbjct: 119 SHDLENDPDILGMVAASAALTLSGLPFLGPIGAARVGLIGGELVLNPMIDEMIESKLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T + +M++ +A+E+ E + + H ++ I+LAEKA K+ + ++
Sbjct: 179 VAGTADAVMMVESEAKELPESQMLEAVMFGHKHMQPVIQAIIKLAEKAAKEPWDIQIPDK 238
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-----DEESLQ 346
++ E V LAE ++ F S E+G+ D +G+ KKA+ E D
Sbjct: 239 AKYAGE-VKKLAEKTLKQAF-----STKEKGKRQDLVGE-AKKAVSEGIAIPADDPNEKV 291
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+L A ++ ++R ++ +R+DGR L VRPI E LP HGS+LF+RG+TQ L
Sbjct: 292 LLSDAFKSLEMDIMRGDVLKTKMRIDGRDLKTVRPILSEVRVLPRTHGSALFTRGETQAL 351
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G +RF+LHY+FPP+ + EVG+ RRE+GHG LA +A+
Sbjct: 352 VVATLGTGEDEQYVDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAI 411
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP + DFPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E
Sbjct: 412 HPMLPSQEDFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKAPVAGIAMGLIKE 471
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D D+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK GI +I+ L+
Sbjct: 472 GD-------DFVVLSDILGDEDHLGDMDFKVAGTANGVTSLQMDIKITGITEEIMRIALD 524
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
AH GR+ IL M + ++ R + +PR+ T+K D +R +IG G++ R+I E+G
Sbjct: 525 QAHDGRIHILGEMAKALTGAREELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESG 584
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I + DGT+ + + NR +EK L ++ I E EVG IYKG V V E+GAFV F G
Sbjct: 585 AKIDIEDDGTVKIASANRESIEKALARIRGITS-EPEVGQIYKGKVVKVMEFGAFVNFFG 643
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS-------PRP 758
+ GL+H+S+L+ V VV GQ++ ++ +G D RG +LS+K V PR
Sbjct: 644 AKDGLVHISQLAPGRPESVGAVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQTTGQEIPRA 703
Query: 759 EADVKGVVE 767
E + + V E
Sbjct: 704 EGEPEEVFE 712
>gi|448237425|ref|YP_007401483.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. GHH01]
gi|445206267|gb|AGE21732.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. GHH01]
Length = 723
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/694 (42%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R + +ETG++A+ ANGA ++ +T VLST T+S+ DF PLTV+Y+E+ +A
Sbjct: 10 IDVAGRPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +LV R+IDRPIRPLF GF +EVQV++ V+S D P++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI + +GR+ GQF++NPT++++ SDL+LV A T++ M+
Sbjct: 130 ALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E + + Q +A + GK+K E L ++ L
Sbjct: 190 EAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQL 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AEA I+ P K R A++ + V E EE DEE L+ + + + + K +R
Sbjct: 250 AEADIKRAVQVP--EKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FPPF + E G G RRE+GHG L E+AL V+P E +FPYT+R
Sbjct: 368 GLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD-------HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ +I+ E L A KGRL+ILDHM +
Sbjct: 481 DIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+S PR + + +P++ + + D +R +IGP G KI +ETG +I + DGT+ + +
Sbjct: 541 TLSEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+
Sbjct: 601 VDEAANQKAKQIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGR 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 660 VGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
Length = 703
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/706 (42%), Positives = 454/706 (64%), Gaps = 21/706 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
K EIG R +TLETG++A+ A+G+V++ ++ VL T T+++ DFLPLT++YQE
Sbjct: 4 KLSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQE 63
Query: 119 KQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
+ +A G IP ++ RRE G P E E L RIIDRP+RPLF AG+ +E QV+A+VLS+D +
Sbjct: 64 RFYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEN 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DP++MA SAAL +S IP+ GP+ +R+G I G++++NP +D+ S L+L+ A T +
Sbjct: 124 DPELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSK 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ A + E ++ G+ AH ++ Q L + G+ K E + E
Sbjct: 184 AVVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKDVGRPKMEVAPPPVDEDLRT 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-------ECDEES-LQVLP 349
+V +LA A + V + + K RGEA + + V LE E D ES L+
Sbjct: 244 RVESLAAAEMTEVIS--TADKKARGEAAHNLQERVLATLEADLVANTPEADLESKLKEAK 301
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ ++K+++R+RI+ E R+D R+LDEVRPI E LP +HGS+LF+RG+TQVL +
Sbjct: 302 GLLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSA 361
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG+ + QR+ESL G K FMLHY+FPP+C+ EV G +RR++GHG LAE+A+ AV
Sbjct: 362 TLGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAIQAV 421
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + FPYT+RV SEV+ S+GS+SMATVCG S++LMDAG+P+++ V+G+++GL+ E
Sbjct: 422 LPDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKE--- 478
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK G+ +I+ + L A
Sbjct: 479 --GE--EVAILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAK 534
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL+ M++ + APR + ++P+L T+ + D +R +IGP G + R I + G +I
Sbjct: 535 DARLHILEKMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKI 594
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
V DG + + A N V ++V E V + E E+G IY G V + ++GAFV+ G
Sbjct: 595 DVEDDGKVKIFAPNGEVADQVRELV-LSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTD 653
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+SEL + V +V+DV+ G ++ ++ + D RG I+LS KAV
Sbjct: 654 GLVHISELENRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699
>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
Y412MC61]
gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC52]
gi|375008241|ref|YP_004981874.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC61]
gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC52]
gi|359287090|gb|AEV18774.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 723
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/694 (42%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R + +ETG++A+ ANGA ++ +T VLST T+S+ DF PLTV+Y+E+ +A
Sbjct: 10 IDVAGRPLIVETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +LV R+IDRPIRPLF GF +EVQV++ V+S D P++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI + +GR+ GQF++NPT++++ SDL+LV A T++ M+
Sbjct: 130 ALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E + + Q +A + GK+K E L ++ L
Sbjct: 190 EAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQL 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AEA I+ P K R A++ + V E EE DEE L+ + + + + K +R
Sbjct: 250 AEADIKRAVQVP--EKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR++DE+RP+ G LP HGS LF+RG TQVL TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FPPF + E G G RRE+GHG L E+AL V+P E +FPYT+R
Sbjct: 368 GLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD-------HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGTR GVTA+Q+DIK G+ +I+ E L A KGRL+ILDHM +
Sbjct: 481 DIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+S PR + + +P++ + + D +R +IGP G KI +ETG +I + DGT+ + +
Sbjct: 541 TLSEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+
Sbjct: 601 VDEAANQKAKQIIEDIV-REVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGR 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 660 VGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
HTCC2594]
gi|123409685|sp|Q2NBZ2.1|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
HTCC2594]
Length = 769
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/709 (42%), Positives = 443/709 (62%), Gaps = 37/709 (5%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT+++ SV+ DF PLTV YQEK
Sbjct: 9 IEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAR--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +REG E+E L R+IDRP+RPLFP GFY+E+ V+A VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRIC-GQFIVNPTM-DELSLS-DLNLVYACTR 236
DI+A A SAAL +S +P+ GPIG R+G G++++NP++ D L +L+LV A T+
Sbjct: 127 DIVAMIAASAALTISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGEDGNLDLVVAATQ 186
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ +A+E++E+ + + AH E+ K + I LAE+A K E L
Sbjct: 187 DAVMMVESEAKELTEEQMLGAVMFAHEESRKVIGAIIDLAEQAAKDPWELDPVEDKSAAL 246
Query: 297 EKV-----SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-----EECDEESLQ 346
EK+ +LA+A Y + + D + KA E EE D
Sbjct: 247 EKLRGVIGDDLAKA----------YKITNKAQRQDAVNAARTKAREHYSDLEESDPAEYM 296
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
K V + ++RK I+ +G R+DGR+ DEVRPI G LP HGS+LF+RG+TQ +
Sbjct: 297 GRLKLVKKLESDIVRKAILKDGQRIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAI 356
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
CT TLG Q ++ L G FMLHY+FPP+ + EVG+ +RRE GHG LA +AL
Sbjct: 357 CTTTLGTKDSEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRAL 416
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
VLP +FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 417 RPVLPDNEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILE 476
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D D+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK AGI +I+ + LE
Sbjct: 477 GD-------DFTVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTKALE 529
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR IL M + + R + +++PR+ T++ D +R +IG G + R+I ETG
Sbjct: 530 QAKAGRAHILGKMTEALGSSRGEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETG 589
Query: 647 GRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
++ + D G + + + N +E + ++ I+ E EVG IY G V ++ ++GAFV F G
Sbjct: 590 AKVDIDDEGVIKISSSNADEIEAARKWIEGIV-EEAEVGKIYNGKVVNIVDFGAFVNFMG 648
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G+ GL+HVSE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 649 GKDGLVHVSEMKNERVEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVV 697
>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
Length = 699
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/699 (42%), Positives = 440/699 (62%), Gaps = 13/699 (1%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
K+ F G+ +TLETG++AR A GAV++ MDET VL+TV +K +DF PLTVDY
Sbjct: 5 IKKTFAYGAHTVTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYV 64
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK +A G IP + +REG P E+E+L R+IDRPIRPLFP GF +EVQV+ +VLS + +
Sbjct: 65 EKFYAAGRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEI 124
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
D DI A SAAL +S +P+ GP+G R+G + G++I+NPT EL S +NLV A T+
Sbjct: 125 DSDIPAMIGASAALAISGLPFNGPVGAARVGYLDGKYILNPTATELQSSAMNLVVAGTQT 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E + + H + ++ L E AGK + +++ + +
Sbjct: 185 AVLMVESEAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEVAGKPEWDWQAPPANAALIA 244
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDTVR 356
KV+ LA+A +E F SK ER L +I + V L E + S+ L +
Sbjct: 245 KVTELAKAEMEEAFR--ITSKQERSARLSEIRKRVIGQLTEGVENAPSVNELKDLFFNLE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R RI+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 SGIVRSRILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRD 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++++ G +RF+LHY+FPPFC E G+ RREVGHG LA+++L+A+LP +F
Sbjct: 363 EQIIDAIAGEYKERFLLHYNFPPFCTGETGRFGITKRREVGHGRLAKRSLVAMLPKPEEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
YTVRV SE+ S+GS+SMA+VCGGS+A+MDAG+PL+ HVAG+++GL+ + +
Sbjct: 423 SYTVRVVSEITESNGSSSMASVCGGSLAMMDAGVPLKNHVAGIAMGLIKDGN-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT G+T +Q+DIK GI +I+ LE A +GRL IL
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTENGITGLQMDIKIQGITKEIMHAALEQAKEGRLHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M++ + R Q +PR+ +K + + +R +IG GA+ R ++EETG I + DG+
Sbjct: 536 GLMQQALGTSRGQVSEYAPRMINMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGS 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + + +++ I E+EVG +Y+G V + ++GA V G+ GLLHVS+
Sbjct: 596 VKISSVSAEGAQAAKARIEAITA-EVEVGKVYEGPVVRLLDFGAIVNIMPGRDGLLHVSQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+++E V+ VSD V GQ + ++ + D RG I+LS+KA+
Sbjct: 655 IANERVNNVSDYVKEGQVVRVKVLETDERGKIRLSMKAL 693
>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
gi|384256386|ref|YP_005400320.1| polynucleotide phosphorylase/polyadenylase [Rahnella aquatilis HX2]
gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
gi|380752362|gb|AFE56753.1| polynucleotide phosphorylase/polyadenylase [Rahnella aquatilis HX2]
Length = 707
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/698 (41%), Positives = 442/698 (63%), Gaps = 13/698 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T+ L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGTQGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + ++ L + GK K +++ ++ + +V+
Sbjct: 188 MVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNAELHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
L+E+ + + K ER ++ I DV +AL+ E + + + ++ K V+
Sbjct: 248 ALSESRLGDAYL--ITEKQERYNQINVIKADVVQALQAEDESLDAGEISDILGSIEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNL 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA++P DFPYTV
Sbjct: 366 DELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE + +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--SFIVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QAISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGEKAKYAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
V +V+D + +GQ++ ++ + D +G ++LS+K A +P
Sbjct: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAP 695
>gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis
SB2B]
gi|187611289|sp|A1S467.1|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis
SB2B]
Length = 699
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/703 (41%), Positives = 448/703 (63%), Gaps = 18/703 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+GAV+ M +T VL TV K D RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP F +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G + G++++NP EL+ S+L+LV A T+ LM
Sbjct: 128 VSMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAGTQSAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + + A +AGK + + + +E + ++
Sbjct: 188 VESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKPRWNWTAPVKNEALVAQIKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE + A + +K ER EA+ ++ + L+E + +++ + ++ K V+R
Sbjct: 248 LAEEGLTAAYQ--IMAKQERYEAVGEVKKATIAKLQEANPDVNVREAADLLGSLEKNVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------NFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R +PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSARPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N + + +++ I E+EVG +Y G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 NNGDATREAIRRIEEITS-EVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
V+ VSD + + Q+++++ + D +G ++LS+K EA VK
Sbjct: 658 VANVSDHLQLNQEVTVKVMEVDRQGRVRLSIK------EAQVK 694
>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
acetiphilus DSM 12809]
gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
acetiphilus DSM 12809]
Length = 711
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/695 (40%), Positives = 430/695 (61%), Gaps = 15/695 (2%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQFAQGVIPN 128
+ ETG A+ ANG++ + T VL T K S + F PLTV+Y EK +A G IP
Sbjct: 19 MIFETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIPG 78
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
+ +RE P + E L R+IDRP+RP+FP GF +E QV+A V+S DG PD++A N S
Sbjct: 79 GFFKREAKPTDNETLTSRLIDRPLRPMFPDGFRNETQVIAHVVSYDGVNSPDMLAMNGAS 138
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AALM+SDIP+ GPI +R+GR+ G+ I+NP D L D+N++ A T + +M++
Sbjct: 139 AALMISDIPFNGPIAGVRVGRLDGKLIINPPADRLEELDMNIILAGTDDAIVMVEAGMSV 198
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL-EKVSNLAEAHI 307
+SE ++ L+ H K + Q + GK+K EY ++++ + E ++ L++
Sbjct: 199 VSEAEVIEALQFGHDNIKKLVAKQNEMVAALGKEKFEYTSFCVADELVDEAMAELSDKLK 258
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKAVDTVRKRVIRKRII 365
EA+ +K E+ EALDKIG++ +A++E+ E+ ++ V K+ R I
Sbjct: 259 EALVIP---AKLEKYEALDKIGEEYLEAMKEKLGEDDFDAELYKNIYHEVEKKAFRDFTI 315
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
R+DGR ++R I E+ LP+ HGS LF+RG+TQ L TLG + Q L+++ G
Sbjct: 316 DTKTRIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYG 375
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
KRFMLHY+FPPFC+ EVG G RRE+GHG LAE++L VLP +DFPYT+R+ SE
Sbjct: 376 DGKKRFMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDFPYTIRIVSE 435
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
V+ S+GS+SMATVCGG +ALMDAG+P++ VAGV++GL+ E + +L+DILG
Sbjct: 436 VLESNGSSSMATVCGGCLALMDAGVPIKSPVAGVAMGLIYE------GADRFAVLSDILG 489
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
EDHLGDMDFK+ GT+ G+TA+Q+DIK G+ +++ L A + R+ IL M +
Sbjct: 490 TEDHLGDMDFKVTGTKDGITALQMDIKIEGLSQELLETALGQAKEARMYILGKMTDHMPV 549
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKNRS 664
P + +PR T+K + + + +IGP G + + I EE+G I + D GT+ + A +++
Sbjct: 550 PNEELAPTAPRYVTMKINPEKIGMVIGPGGKMIKSIIEESGAAIDIDDTGTINIFAADKA 609
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
+E + +V+ I+ E+E G +Y V + EYGAFVE GQ+ LLHVS+ SHE ++ +
Sbjct: 610 SIEIAVRRVNEIVA-EVEDGAVYDATVKKMMEYGAFVELIPGQEALLHVSQYSHERINSI 668
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+D ++VG ++ ++ +G+D G KLS K + RP+
Sbjct: 669 ADYLNVGDKVQVKVVGKDPNGRFKLSRKVLLERPK 703
>gi|452990674|emb|CCQ98083.1| polynucleotide phosphorylase (PNPase) [Clostridium ultunense Esp]
Length = 708
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/706 (42%), Positives = 441/706 (62%), Gaps = 14/706 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E +I + +TLETGK+A+ A+GAV++ +T VLSTVT SK DF PLTV+Y+E+ +
Sbjct: 9 ELDIAGKKMTLETGKVAKQASGAVLVRFGDTVVLSTVTVSKEPKELDFFPLTVNYEERLY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+IDRPIRPLFP GF +EVQ++ VLS D +I
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQIVNLVLSVDQDYSSEI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TS AL +S+IP+ GPIG + +GR+ G++++NPT++E SDL+LV A T++ M
Sbjct: 129 AAMVGTSCALSISEIPFNGPIGGVIVGRVAGKYVINPTVEEAEKSDLHLVVAGTKDAVNM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A+ ++E+++ G+ H E K E + A + GK K E L ++E+ V +
Sbjct: 189 VEAGAKFLTEEEMLQGIIAGHTEIKKICEEIEKFAVRVGKPKMEVTLYQVNEEIDHAVRD 248
Query: 302 LA-EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAVDTVRKRV 359
A E I+A+ T K R EA+D + ++ +EE ++ + + + + K
Sbjct: 249 FAREKLIQAIQTP---DKQARQEAIDAVNEETLNHFSTLYTEEEEIRQVSEILHNILKEE 305
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ I E +R DGR L E+RPI E G LP HGS LF+RG TQ L TLGA + Q
Sbjct: 306 VRRLITHEKIRPDGRALTEIRPITTEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 365
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L KRFM HY+FPPF + E RRE+GHG L E+AL ++P E +FPYT
Sbjct: 366 LDGLDLEEEKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALEPIIPSEEEFPYT 425
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV+ S+GSTS A++C +MALMDAG+P++ VAGV++GL+ + D Y I
Sbjct: 426 IRLVSEVLESNGSTSQASICASTMALMDAGVPIKAPVAGVAMGLIKDGD-------HYSI 478
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDI G+EDHLGDMDFK+AGT G+TA+Q+DIK GI +II + L+ A +GRL IL+ M
Sbjct: 479 LTDIQGMEDHLGDMDFKVAGTDFGITALQMDIKIEGITYEIIDQALKQAKEGRLFILNKM 538
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
I+ PR +P++ TL+ D D +R +IGP G + KI +ETG +I + DG + +
Sbjct: 539 RETIAEPRKNLSPYAPKIITLRIDPDKIREVIGPGGRMINKIIDETGVKIDIEQDGRVYI 598
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ N K + ++ ++ RE+ VG Y G V ++++GAFVE G++GL+H+S+L+
Sbjct: 599 ASPNMEQNMKAKKIIEDLV-REVVVGETYLGTVKRIEKFGAFVEVIPGKEGLVHISQLAP 657
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
V++V DVV VG + ++ I D +G + LS KAV D KG
Sbjct: 658 NRVNKVEDVVKVGDTVLVKVIEIDDQGRVNLSRKAVLQAETGDDKG 703
>gi|383757408|ref|YP_005436393.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
gi|381378077|dbj|BAL94894.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
Length = 766
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/706 (42%), Positives = 449/706 (63%), Gaps = 20/706 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQF 121
F+ GS +T+ETG+IAR + GAVV+ +D+T VL+TV + ++ + +DF PLTVDY EK +
Sbjct: 11 FQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKTEAKTGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +REG P E E L R+IDRPIRPLFP GFY+EVQV+ VLS + + DI
Sbjct: 71 AAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSLNPEVQADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G + G++++NP+ +L+ S ++LV A T LM
Sbjct: 131 PAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+SE+ + + H + + L +AGK +++ E + KV+
Sbjct: 191 VESEATELSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAKDEPFIAKVNA 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT----VRK 357
LAE + A + SK R +A +G V+ AL+EE + P AVD +
Sbjct: 251 LAEEPLRAAYQ--IRSKQARTQATRAVGASVQAALKEE----GVAFDPVAVDNLLFEIEA 304
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
R++R +I+A R+DGR VRPI S LP HGS+LF+RG+TQ L TLG +A
Sbjct: 305 RIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDA 364
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR+++L G RFMLHY+ PPF E G+ RRE+GHG LA++AL+AVLPP+++FP
Sbjct: 365 QRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPPKDEFP 424
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE+ S+GS+SMA+VCGG ++L+DAG+PL+ HVAG+++GL+ E + +
Sbjct: 425 YTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGN-------RF 477
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + RL IL
Sbjct: 478 AVLTDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILG 537
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTL 656
M + + + + +PRL T+K + + +R +IG GA R + +ETG I + DGT+
Sbjct: 538 KMVEAVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTI 597
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
T+ + + ++++ I E E+G +Y+G +T + ++GA V G+ GLLH+S++
Sbjct: 598 TIASTDADKAAFAQKRIEEITA-EAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQI 656
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+H+ V +V+D ++ GQ + ++ + D +G IKLS+KA+ +PE V
Sbjct: 657 AHQRVEKVTDFLTEGQVIKVKVLETDEKGRIKLSMKALLDKPEGYV 702
>gi|398812123|ref|ZP_10570899.1| polyribonucleotide nucleotidyltransferase [Variovorax sp. CF313]
gi|398078889|gb|EJL69771.1| polyribonucleotide nucleotidyltransferase [Variovorax sp. CF313]
Length = 766
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/698 (40%), Positives = 438/698 (62%), Gaps = 12/698 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G + + +ETG++AR ANGAV++ +D T +L+TV +SK +DF PLTVDY EK +
Sbjct: 11 FQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GF +EV V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL +S IP+ GPIG R+G I GQ+++NP S ++LV A T+ LM
Sbjct: 131 AAMIGVSAALAISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVAGTQAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + G+ H +A + L AGK +++ E + KV
Sbjct: 191 VESEAQQLSEEVMLGGVVFGHEQANIAINAIHDLVRDAGKPVWDWQAPAEDEAFVAKVKG 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE + AV+ SK R +AL + V L+E + + + + +++R
Sbjct: 251 LAEEKLRAVYQ--IRSKQARTQALREANASVMNTLKESGEPFDTGKVNDLLFAIESKIVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+I++ R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR++
Sbjct: 309 SQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL+AVLP + +FPYTVR
Sbjct: 369 ALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEEFPYTVR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +LT
Sbjct: 429 VVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------RFAVLT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVA 660
+ + + +PRL TLK + + +R +IG G++ R ++EETG I++ DGT+T+ +
Sbjct: 542 AMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ E ++++ I E+E+G +Y+G VT + ++GA + G+ GLLH+S+++HE
Sbjct: 602 TDPEKAELAKKRIEQITA-EVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V +V+D +S GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERP 698
>gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
8797]
gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
8797]
Length = 711
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/701 (42%), Positives = 440/701 (62%), Gaps = 22/701 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E E+G + ++L TG++A+ A GAV++ ET V + G DF PLTVDY+E+
Sbjct: 6 ECEVGGQKLSLTTGQLAKQAAGAVLVQYGETVVFVAAATGPGRPGIDFFPLTVDYRERAA 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G P +++REG P +E+L R+ DRPIRPLFP GF+ E+Q+ ++V+S DG +PD+
Sbjct: 66 ASGKFPGGFLKREGRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGINEPDV 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ N SAAL LS +P+ GPIG +RIGRI G+ IV P ++++ DL+L+ A T E LM
Sbjct: 126 LSINGASAALCLSPVPFQGPIGAVRIGRIDGELIVFPNHEQIAEGDLDLIVAGTIESVLM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-------LSMISEQ 294
I+ +I E ++ + LAH E K + Q+ L EKAG + EY+ ++ + +
Sbjct: 186 IEGFGNQIPEDEMLEAIMLAHTELAKICKLQLELREKAGIEPFEYEAPPENPFVAKLDDA 245
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+K+S+ ++ ++A D + + E E ++K + E D ++ +A
Sbjct: 246 IFQKLSSAMQSTVKAERRDGAKAIQE--ELINKFFPEGADTTE---DGATIGDFKEAFHD 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ + +R+ I G R+DGR D +R + CE+G LP +HGS++F+RG+TQ L TVTLG
Sbjct: 301 LEAKAVREMAIT-GRRLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTS 359
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ QR++ L ++FMLHY FP F + E G RRE+GHG LAE+++L VLP E
Sbjct: 360 RDKQRVDGLFEEELQQFMLHYYFPSFSVGECRPIRGPGRREIGHGCLAERSVLPVLPNEE 419
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+RV S+++ S+GS+SMA+VC ++ALMDAG+PL++ VAG+S+GLV++
Sbjct: 420 DFPYTIRVISDILESNGSSSMASVCSATLALMDAGVPLRQPVAGISIGLVTKG------- 472
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
K+Y+ILTDI+G EDH DMDFK+AGT+ G+T IQLD+K GI +II LE A K RL+
Sbjct: 473 KEYKILTDIIGDEDHFCDMDFKVAGTQKGITGIQLDLKNDGINEEIIKATLEQAKKARLE 532
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
+L M I PR + +PRL K + + + LIGP G R I+EETG I + D
Sbjct: 533 LLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGATIDIQDD 592
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+TV N SV+EK + ++ + EI VG IY GVV+S+KE+GAF+E G+ GL H+
Sbjct: 593 GTVTVSGGNVSVVEKAMAHIEALT-EEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHI 651
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SELS V VSD+ +G +L ++ I D + +KLS KAV
Sbjct: 652 SELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAV 692
>gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase [Haemophilus ducreyi 35000HP]
gi|81423299|sp|Q7VL91.1|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi
35000HP]
Length = 712
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 286/694 (41%), Positives = 437/694 (62%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V +V + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+Q++A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT+ E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + A + H + +E ++AGK + +++ + + + +V
Sbjct: 186 LMVESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKEAGKPRWDWQPAEANTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAE I + K R E +D I DV L + + S + + + V
Sbjct: 246 KALAETRIGDAYR--ITEKQARYEQIDAIKADVIAQLTAQDETISEGAIIDIITALESSV 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+A R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRILAGEPRIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGIAMGLVKEDE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L A R+ IL+ M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRKGITALQMDIKIEGITPEIMHIALNQAKGARMHILNVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ + APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQALPAPRADLSDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IY G V+ V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKMVMSRIEEIVA-EVEVNAIYTGKVSRVVDFGAFVTILGGKEGLVHISQITD 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RVSD +SVGQ+++++ + D + I+L++K
Sbjct: 656 ARVERVSDYLSVGQEVNVKVVEIDRQNRIRLTMK 689
>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
EPS]
gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
EPS]
Length = 775
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/698 (40%), Positives = 440/698 (63%), Gaps = 12/698 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G + + +ETG++AR ANGAV++ +D T +L+TV +SK +DF PLTVDY EK +
Sbjct: 11 FQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GF +EV V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL +S IP+ GPIG R+G I GQ+++NP S ++LV A T+ LM
Sbjct: 131 AAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVAGTQAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + G+ H +A + L AGK +++ E + KV
Sbjct: 191 VESEAQQLSEEIMLGGVVFGHEQAGIAINAIHDLVRDAGKPVWDWQAPAEDEAFVAKVKG 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE + AV+ SK R +AL + V +L+E + + + ++ +++R
Sbjct: 251 LAEEKLRAVYQ--IRSKQARTQALREANATVMASLKESGEPFDAGKVNDLLFSIESKIVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+I++ R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR++
Sbjct: 309 SQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL+AVLP + +FPYTVR
Sbjct: 369 ALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEEFPYTVR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +LT
Sbjct: 429 VVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------RFAVLT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVA 660
+ + + +PRL TLK + + +R +IG G++ R ++EETG I++ DGT+T+ +
Sbjct: 542 AMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ E ++++ I E+E+G +Y+G VT + ++GA + G+ GLLH+S+++HE
Sbjct: 602 TDPEKAELAKKRIEQITA-EVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V +V+D +S GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERP 698
>gi|365966470|ref|YP_004948032.1| LOW QUALITY PROTEIN: polynucleotide phosphorylase/polyadenylase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745383|gb|AEW76288.1| LOW QUALITY PROTEIN: polynucleotide phosphorylase/polyadenylase
[Aggregatibacter actinomycetemcomitans ANH9381]
Length = 743
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 438/701 (62%), Gaps = 12/701 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD-FLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K R FLP+ +YQE+
Sbjct: 40 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKRCERRSGFLPIDRNYQER 99
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 100 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 159
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I GQF++NPTM+E S L+LV A T +
Sbjct: 160 DLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAV 219
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E L +AGK + ++ + + KV
Sbjct: 220 LMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTALINKV 279
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV + E +E S + + ++
Sbjct: 280 KALAEARLGDAYR--ITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALESQI 337
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 338 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 397
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + F+ HY+FPP+ + E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 398 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 457
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 458 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEED-------KFVV 510
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVM 570
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 571 EQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 630
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ ++ V+ +++ I E+EVG YKG V + ++GAFV G ++GL+H+S+++
Sbjct: 631 AAVDKNAVQDVMARIEDITA-EVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAE 689
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
E V +VSD + VGQ++ ++ + D +G I+L++K + P+ +
Sbjct: 690 ERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQD 730
>gi|367471499|ref|ZP_09471106.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 285]
gi|365276190|emb|CCD83574.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 285]
Length = 718
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/699 (42%), Positives = 434/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K D V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF + +E QV+ +VLS D + DP
Sbjct: 67 AYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A SAAL LS +P+ GPIG R+G ++I+NPT+DE++ + L+LV A T +
Sbjct: 127 DIVALVGASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E + + H + I LAEKA K ++ +++I +EK
Sbjct: 187 LMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPRD--VAIIDNSAIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV--DTVR 356
+ +AE + + P K +R A+ + + V E E L A +
Sbjct: 245 MLGIAEQDLRTAYAIPI--KQQRYAAVGAVKEKVMAYFFPEGQEPKYDKLRVAAVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I CE G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT RV SEV S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 423 PYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG-------SR 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A +GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ + V + +DVV G ++ ++ +G D RG +LS+KAV
Sbjct: 655 LADKRVQKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
Length = 706
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 295/704 (41%), Positives = 447/704 (63%), Gaps = 16/704 (2%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E +EF I R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLT
Sbjct: 1 MEQETKEFSIDWAGRKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKPLDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P ER +L R+IDRPIRPLF GF +EVQV++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D ++ A +S AL +SDIP+ GPI +++G I G+FI+NP +D+L S++NL+ A
Sbjct: 121 DQDCSSEMAAMFGSSLALTVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEINLIVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q +A + GK+K E +L I +
Sbjct: 181 GTKDAINMVEAGADEVPEETMLEAIMFGHEEIKRLISFQEEIAAQVGKEKMEVELYQIDQ 240
Query: 294 QTLEKVSNLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKA 351
+V + E I+A+ ++ R A+ ++ DV EE E DE L+ + +
Sbjct: 241 DIEAEVRGICEEDMIKAIQVQEKHA---REAAIKEVKDDVIAKFEEKEADEAQLKQVKQV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+D + K +R+ I E +R DGR LDE+RP+ + G LP HGS LF+RG TQ L TL
Sbjct: 298 LDKLVKGEVRRLITEEKLRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
GA + Q ++ L +KRFM HY+FP F + E G G RRE+GHG L E+AL ++P
Sbjct: 358 GAMGDVQVIDGLGLEESKRFMHHYNFPLFSVGETGPIRGPGRREIGHGALGERALEPIIP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
E DFPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GL+ +
Sbjct: 418 NEKDFPYTIRIVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLI-----QS 472
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE Y ILTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A G
Sbjct: 473 GE--HYSILTDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLSREILEEALQQAKSG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ ILD M IS R++ + +P++ T+ + D +R +IGP G KI EETG +I +
Sbjct: 531 RMHILDSMLSTISESRSKLSQYAPKILTMHINPDKIRDVIGPSGKQINKIIEETGVKIDI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DG++ + + + + +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL
Sbjct: 591 EQDGSVFISSTDEEMNKKAKKIIEDIV-REVEVGQLYLGKVKRIEKFGAFVEIFNGKDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+SEL+ E + +V DVVS+G +L ++ D +G + LS KAV
Sbjct: 650 VHISELAEERIGKVEDVVSIGDELLVKVTEIDRQGRVNLSRKAV 693
>gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
506]
gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
506]
Length = 718
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/724 (41%), Positives = 451/724 (62%), Gaps = 19/724 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + G R + LETG++AR A+GAV+ +T VL+T S+K +DF PLT
Sbjct: 1 MFDIHREELDWGGRTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ A SAAL LS +P+ GPIG R+G I ++++NPT+DE+ S L+LV A
Sbjct: 121 DLENDPDVVSMVAASAALTLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E+ + + H ++ IRLAEKA K+ +E+ +
Sbjct: 181 GTADAVLMVESEAKELAEEVMLGAVMFGHRHFQPVIDAIIRLAEKAAKEPREF--AAPDH 238
Query: 294 QTLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE----ESLQVL 348
LE ++ L EA + A + K +R A+D K E Q L
Sbjct: 239 SALETELRGLIEADLRAAYK--IARKQDRYAAVDAAKAKAKAHYAALAAEGQAVPEAQTL 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ + + +++R I+ +GVR+DGR VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 297 SEVLKELEAKIVRWTILDDGVRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVV 356
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q ++SL G +RF+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 357 ATLGTGEDEQFIDSLEGTYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRP 416
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LPP ++FPYT+R SE++ S+GS+SMATVCG S+ALMDAG+P++ VAG+++GL+ E
Sbjct: 417 ILPPAHEFPYTLRAVSEILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILE-- 474
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK AGI +I+ L A
Sbjct: 475 ---GE--KFAVLSDILGDEDHLGDMDFKVAGTDKGVTALQMDIKIAGITEEIMKVALAQA 529
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR IL M + ++ R + ++PR+ ++ D +R +IG G + R+I E+TG +
Sbjct: 530 KDGRAHILGEMAKALTGARAELGEHAPRIEVIQIPVDKIREVIGSGGKVIREIVEKTGAK 589
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I++ DGT+ V + + ++ L + I E EVG IY+G V V ++GAFV F G +
Sbjct: 590 INIEDDGTVKVASASGESIKAALNWIKS-IASEPEVGQIYEGTVVKVVDFGAFVNFFGAK 648
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVE 767
GL+HVS+L+ E V++ SDVV G ++ ++ +G D RG +LS+K V D++ +
Sbjct: 649 DGLVHVSQLAKERVAKPSDVVKEGDKVKVKLLGFDERGKTRLSMKVVDQATGEDLEAKGK 708
Query: 768 GSVP 771
G P
Sbjct: 709 GDEP 712
>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase [Bartonella henselae str. Houston-1]
gi|81648398|sp|Q6G5F8.1|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
Houston-1]
Length = 733
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/718 (41%), Positives = 442/718 (61%), Gaps = 22/718 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+I+NP +DE+S S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTENAVLMVESEAQELPEDIMLGAVMFGHKGLQPILDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQV 347
+ LE +AE I +T K ER ALD + ++ E +E+ S+
Sbjct: 241 LETAMLE----MAEKDIRKAYT--ITDKQERYAALDALKTEIINKFMPETEEDCKFSVDQ 294
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 295 IATVFKQLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIV 354
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 355 VATLGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIH 414
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 415 PMLPSKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE- 473
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 ----GE--RFAVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIDGITEEIMKIALEQ 527
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 528 AKGGRIHILNEMAKALTSARAELSEFSPRIEVMNIAVDKIRDVIGTGGKVIREIVEQTGA 587
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ + + + +E + I+ E EVG IY+G V E+GAFV F G
Sbjct: 588 KINIEDDGTIRIASADAKTIEAAKRWIHSIVD-EPEVGVIYQGTVVKTAEFGAFVNFFGS 646
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+ GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V + ++ G
Sbjct: 647 RDGLVHISQLTTERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQKTGKEIIG 704
>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 704
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 446/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + +E LA +AGK + E+ ++E
Sbjct: 181 GTEGAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+V+ LAEA I + K R +D+I DV AL+ E + + + +
Sbjct: 241 ALHARVAALAEARIGDAYH--ITEKQARYAQIDQIKADVIAALQAEDESLNAGEIADVLG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 SLEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P +
Sbjct: 359 ERDAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQ 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 419 DEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ I+APR +PR+ T+K + + ++ +IG G++ R + +ETG I +
Sbjct: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDNEKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
Length = 701
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/693 (42%), Positives = 432/693 (62%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQEKQ 120
+ E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTVDY+E+
Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D PD
Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A +S AL +SDIP+ GP G + +G + G+ ++NPT E +S L+LV + T+++ +
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MI+ A+E+ E + + +A E K +E + ++ GK K EY+ ++ E+ +KV
Sbjct: 187 MIEAGAKEVPEDIMIEAILIAQEEIKKIVEFIEEIVKEVGKPKMEYQKRVVPEEIKQKVR 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+A + P K ER + LD++ ++V KA E E EE+L ++ A+ + K ++
Sbjct: 247 EIAYDKVYQYVQIPD--KVERDKKLDELKEEVFKAFEGET-EETLLLVDDALYNLEKEIV 303
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG E Q L
Sbjct: 304 RKMIADEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFL 363
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E++FPYT+
Sbjct: 364 DGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSEDEFPYTI 423
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S + +L
Sbjct: 424 RLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDS------FILL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+ILD M+
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQ 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
I PR++ +P++ D + +R +IGP G + KI ET +I + DG + V
Sbjct: 538 TVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+S+L
Sbjct: 598 APDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +VV VG + ++ IG D G + LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|429505223|ref|YP_007186407.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|429486813|gb|AFZ90737.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 707
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/689 (42%), Positives = 443/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI G+F++NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I E+ EKV +LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIQLYEIDEELSEKVKSLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++++ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|389690696|ref|ZP_10179589.1| polyribonucleotide nucleotidyltransferase [Microvirga sp. WSM3557]
gi|388588939|gb|EIM29228.1| polyribonucleotide nucleotidyltransferase [Microvirga sp. WSM3557]
Length = 725
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/710 (42%), Positives = 447/710 (62%), Gaps = 21/710 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE R + LETGK+AR A+GAVV ET VL+TV S+K DF PLTV+YQE
Sbjct: 6 REELIWAGRKLVLETGKMARQADGAVVATYGETTVLATVVSAKEPKAGVDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 66 RTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVEGYKNDTQVVVTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PD++A A SAAL LS +P+ GP+G R+G I GQ+ +NP + E+ S L+LV A T E
Sbjct: 126 PDVVAMVAASAALTLSGVPFMGPVGAARVGYIGGQYKLNPPIQEMEQSALDLVVAGTSEA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+ E + + H +E IRLAEKA K+ ++Y+ + +SE +
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDYQPADVSE-VEQA 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-----EEECDEESLQVLPKAVD 353
V +AEA + + K +R A+D + V AL E + D E ++ + K
Sbjct: 245 VLAIAEADLREAYK--LTKKQDRYAAVDAVKAKVMDALVPADGEAKFDPEKVKAVFK--- 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +V+R I+ G R+DGR L VRPI E G LP HGS++F+RG+TQ L TLG
Sbjct: 300 EAQAKVVRWNILDTGTRIDGRDLKTVRPILSEVGVLPRTHGSAVFTRGETQALVVTTLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++ L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LPP
Sbjct: 360 GEDEQFIDELEGTRKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPPS 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCGGS++LMDAG+PL+ VAG+++GL+ E GE
Sbjct: 420 HEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L+ A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGTDQGITSLQMDIKIAGITEEIMRVALDQAKDGRG 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS- 652
IL M + ++APR + ++PR+ T++ D +R +IG G + R+I E+TG +I ++
Sbjct: 533 HILAEMNKALTAPRAELGEHAPRIETMQIPVDKIREVIGSGGKVIREIVEKTGAKIDIND 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG + + + + ++ + I+ E EV IY G V V E+GAFV F G + GL+H
Sbjct: 593 DGLIKIASADGKSIKAAYNWIRSIVA-EPEVNVIYDGTVVKVMEFGAFVNFFGSRDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+SEL+ V +V+DVV G ++ ++ +G D RG ++LS+K V+ D+
Sbjct: 652 ISELAKNRVGKVTDVVKEGDKVKVKFLGMDERGKVRLSMKVVNQETGEDI 701
>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase [Bacillus amyloliquefaciens FZB42]
gi|384265253|ref|YP_005420960.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385264795|ref|ZP_10042882.1| polynucleotide phosphorylase [Bacillus sp. 5B6]
gi|387898250|ref|YP_006328546.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens Y2]
gi|452855616|ref|YP_007497299.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|187470933|sp|A7Z4U0.1|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
gi|380498606|emb|CCG49644.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385149291|gb|EIF13228.1| polynucleotide phosphorylase [Bacillus sp. 5B6]
gi|387172360|gb|AFJ61821.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens Y2]
gi|452079876|emb|CCP21634.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 707
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/689 (42%), Positives = 443/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI G+F++NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I E+ EKV +LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSEKVKSLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++++ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|375106904|ref|ZP_09753165.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium JOSHI_001]
gi|374667635|gb|EHR72420.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium JOSHI_001]
Length = 768
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/699 (41%), Positives = 442/699 (63%), Gaps = 12/699 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG+IAR ++GAVV+ M++T VL+TV + S+ + +DF PLTVDY EK +
Sbjct: 11 FQWGQHSVTLETGEIARQSSGAVVVHMEDTVVLATVVAKSEAKAGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EVQV+ VLS + + DI
Sbjct: 71 AAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSLNPEVQADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +S IP+ GPIG R+G + G++++NP +L+ S ++LV A T LM
Sbjct: 131 AALIGTSAALAISGIPFNGPIGAARVGYVNGEYVLNPGKTQLADSKMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ +SE+ + + H + + L AGK + +++ +E + KV+
Sbjct: 191 VESEAQMLSEEIMLGAVVYGHDQGKIAINAINELVRDAGKPEWQWQAPAKNEPFIAKVNA 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA+ + A + SK R +A + +V AL+ E E + + + R++R
Sbjct: 251 LADGPLRAAYQ--IRSKQARTQACRDVTSNVLAALKAEGIEFDKVEVEGLLFEIESRIVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+I+A R+DGR VRPI +G LP HGS+LF+RG+TQ + TLG +AQR++
Sbjct: 309 GQILAGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAVVVATLGTDRDAQRID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G +RFMLHY+ PPF E G+ RRE+GHG LA++AL+A LP + DFPY++R
Sbjct: 369 ALAGEFEERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAALPSKEDFPYSIR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ + + + +LT
Sbjct: 429 VVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGN-------RFAVLT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + RL IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQD 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVA 660
+ +T+ + +PRL T+K + + +R +IG GA R + EETG I + DGT+T+ +
Sbjct: 542 AVGGAKTEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGCTIDIGEDGTITIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ E +++ I E E+G +Y+G VT + ++GA + G+ GLLH+S+++H+
Sbjct: 602 TDADKAEFAKKRITEITA-EAEIGKVYEGPVTKILDFGALINILPGKDGLLHISQIAHQR 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
V +V D + GQ + ++ + D +G IKLS+KA+ RPE
Sbjct: 661 VEKVEDFLKEGQVVKVKVLETDEKGRIKLSMKALLERPE 699
>gi|422027504|ref|ZP_16373845.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|414014723|gb|EKS98563.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
Length = 702
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/709 (41%), Positives = 444/709 (62%), Gaps = 25/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + + L E + L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDETLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I N+PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAI---------NAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 580
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 581 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 639
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K + + +
Sbjct: 640 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQ 688
>gi|334344890|ref|YP_004553442.1| Polyribonucleotide nucleotidyltransferase [Sphingobium
chlorophenolicum L-1]
gi|334101512|gb|AEG48936.1| Polyribonucleotide nucleotidyltransferase [Sphingobium
chlorophenolicum L-1]
Length = 781
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/701 (42%), Positives = 439/701 (62%), Gaps = 19/701 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDY 116
K E+G + +TLETG+IAR A+ AV+ ET VL VT++K SV+ DF PLTV Y
Sbjct: 6 KVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHY 63
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ V+A VLS DG+
Sbjct: 64 QEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSFDGE 123
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
+PDI+A A SAAL LS +P+ GPIG R+G G++ +NP++DE+ +L+LV A T
Sbjct: 124 SEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATG 183
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+M++ +A+E+SE + + AH + K + I LAEKA K + E
Sbjct: 184 SAVMMVESEAKELSEDVMLGAVLFAHEASKKIVNAIIDLAEKAAKDPWDVAKGDDLEDLK 243
Query: 297 EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVK-KALEEECDEESLQVLPKAVD 353
+K+ L I A + TD S R AL++ K + + + D +++ K
Sbjct: 244 KKLKKLIGKDITAAYKLTDKS----ARSNALNEARAKAKAQFVADGLDAQTVMAGIKLTK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R I+ +G R+DGR ++RPI G LP HGS+LF+RG+TQ +CT TLG
Sbjct: 300 KLEAEIVRGAILKDGKRIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +
Sbjct: 360 KDAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSK 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E
Sbjct: 420 DEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG------ 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
K++ +L+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR
Sbjct: 474 -KNFAVLSDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRA 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + +S+ RT+ ++PR+ T++ D +R +IG G + R+I ETG ++ + D
Sbjct: 533 HILGEMSKALSSTRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDD 592
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
+ ++ + + + +K I E EVG IY G V ++ ++GAFV F GG+ GL+HV
Sbjct: 593 EGIIKISSSDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHV 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SE+ +E V + +DVVS GQ++ ++ + D RG ++LS++ V
Sbjct: 653 SEMKNERVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVV 693
>gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
Y412MC10]
gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
Y412MC10]
Length = 701
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/697 (42%), Positives = 435/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + ETG++A+ AN AV++ ET VL TVT+S DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ G F+VNP + E SD+ LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E+ + + H E K + L GK+K KL ++E +V
Sbjct: 186 VEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNREVRE 245
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
AEA +EAV + ++ R +A+D I + EE+ E E L+ + + + + K
Sbjct: 246 FAEARLVEAVRIEEKHA---RQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR L E+RPI C++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E DFPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
ILTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ E L+ A +GR+ IL
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR + +P++ T++ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MAEAIQKPRETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N + +K L ++ I+ RE+ VG IY G V ++++GAFVE + GL+H+S+LS
Sbjct: 596 IASSNDEMNKKALSIIEGIV-REVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++++ D +G I LS KAV
Sbjct: 655 TERVAKVEDVVAIGDVITVKVTEIDQQGRINLSRKAV 691
>gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase [Maricaulis maris MCS10]
gi|122314882|sp|Q0AK62.1|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10]
Length = 710
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/711 (42%), Positives = 443/711 (62%), Gaps = 20/711 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
KE E R +T+ETG++AR A+GAV++ ET VL+T K DF PLTV+YQE
Sbjct: 6 KETIEWAGRPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P ++E L R+IDRPIRPLF GF +EVQVM +VLS D + D
Sbjct: 66 KYFAAGKIPGGFFKREGRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ SAAL+LS +P+ GPIG R+G G++++NP DE+ S+L+LV A T++
Sbjct: 126 PDIVGMIGASAALVLSGLPFMGPIGAARVGYKDGEYVINPPCDEMDDSELDLVVAGTQDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A+E+SE+ + + H ++ I+LAE+A K+ +Y + S + K
Sbjct: 186 VMMVESEAKELSEEVMLGAVMAGHKAFQPVIDMIIKLAERAAKEPWDYAPADHSAEE-AK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTV 355
V +L + A +T K ER +A+ +AL EE D + L + V
Sbjct: 245 VRDLIGDDLAAAYT--IVDKTERYKAVGAAKDKAVEALLQTEERPDGIDMTTLKDVMKAV 302
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R II G R+DGR LD+VR I E+G LP HGS+LF+RG+TQ L TLG
Sbjct: 303 ESSIVRGGIIKTGKRIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGTGE 362
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G +RFMLHY+FPP+ + E R+ RRE+GHG LA +A+ AVLP + D
Sbjct: 363 DEQFIDALTGTYKERFMLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRAVKAVLPTKED 422
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+R+ SE+ S+GS+SMATVCG S+++MDAG+P+ V+G+++GL+ DP +
Sbjct: 423 FPYTIRLVSEITESNGSSSMATVCGASLSMMDAGVPITRPVSGIAMGLIK--DP-----E 475
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A GRL I
Sbjct: 476 GIAVLSDILGDEDHLGDMDFKVAGTTEGVTSLQMDIKIAGIDEEIMKTALAQASGGRLHI 535
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
L+ M + + RT+ +PR+ T+ D +R +IG G + R+I E TG ++ V+ DG
Sbjct: 536 LEEMGKALGEARTELGEFAPRIETITIPTDKIRDVIGSGGKVIREIVETTGAKVDVNDDG 595
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
+ V + + + ++ L D+I G E E G IYKG V V ++GAFV F G + GL+H
Sbjct: 596 VIKVSSSDGASIKAAL---DWIHGLTAEPEEGQIYKGKVVKVMDFGAFVNFFGPKDGLVH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
VS+L E V+ SDVV GQ++ ++ +G D RG ++LS+K + ++K
Sbjct: 653 VSQLKAERVNHPSDVVKEGQEVYVKLLGFDDRGKVRLSMKIIDQETGEEIK 703
>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
gi|257096692|sp|B3EAF2.1|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
Length = 703
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 438/703 (62%), Gaps = 18/703 (2%)
Query: 58 TFKE---EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
TF E E ++G+ + + TGK+A+ A+GAVV+ +T VL TV +K +DF PLT
Sbjct: 2 TFNEKCVEAQVGNMNVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKPGQDFFPLT 61
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y EK +A G IP ++ +REG P E E L+ R+IDRPIRPLFP + + QVMA+V+S+
Sbjct: 62 VNYTEKTYAGGKIPGSFFKREGRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISA 121
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ DP I++ SAALM+SDIP+ GPI +++GR+ G+ I NP+ ++L LSDL +V A
Sbjct: 122 EEDHDPAILSMIGASAALMISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDLEIVVA 181
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
++ M++ +A +SE+DL + A L Q LA + G K+E ++ E
Sbjct: 182 AGKDAIFMVEGEADFVSEEDLLEAVFFAKDAVQGILAAQEELARQVGVAKREVAPLVVDE 241
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
KV LA I F +K ER A+ +I ++V AL EE + ++ D
Sbjct: 242 ALKAKVKALAFDRIAQAFK--IKAKQERYAAVAQIKEEVVAALAEEFEGRDKEIKGFIGD 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
R +R ++ G+R+DGR VRPI E+G LP HGS+LF+RG+TQVL TLG
Sbjct: 300 IEYDR-MRHDVLETGIRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ QR++SL G K+FMLHY+FPPF + E R+ RRE+GHG LAE+A+ A+LP
Sbjct: 359 SQDEQRMDSLYGEYRKKFMLHYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPNH 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+DFPYT+R+ +E + S+GS+SMATVCGG ++LMDAG+P++ VAG+++GL+ E GE
Sbjct: 419 DDFPYTIRIVAETLESNGSSSMATVCGGCLSLMDAGVPVKAPVAGIAMGLIKE-----GE 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
ILTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK G+ +I+ + L+ A +GRL
Sbjct: 474 --KVAILTDILGDEDHLGDMDFKVAGSADGVTALQMDIKIGGVSKEIMQQALKQAKEGRL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-- 651
IL M + ++APR + +PR+ T+ D +R +IG G R I E TG I +
Sbjct: 532 HILGKMAQCLAAPREEMSAFAPRITTIWIKPDRIRDVIGTGGKTIRSITEATGVMIDIDS 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
+ G + + + +++ + ++ + + E+E G +Y G V + E+GAFVE G GL
Sbjct: 592 DNSGKINIASSDKAACDAAIQMIRGLT-DEVEEGKLYMGTVKKIMEFGAFVEVLPGTDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
+H+SEL V V+D+++ G ++ ++CIG D +G IKLS KA
Sbjct: 651 VHISELDETRVKNVTDILNEGDKVLVKCIGVDKQGKIKLSRKA 693
>gi|399074264|ref|ZP_10750906.1| polyribonucleotide nucleotidyltransferase [Caulobacter sp. AP07]
gi|398040577|gb|EJL33677.1| polyribonucleotide nucleotidyltransferase [Caulobacter sp. AP07]
Length = 716
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/714 (41%), Positives = 451/714 (63%), Gaps = 34/714 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+ E ++ E G + + LETG+IAR A+GAV+ M ET VL+T V + K +DF PLT
Sbjct: 1 MFEIMRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y EK +A G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL
Sbjct: 61 VNYIEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL++S P+ GPIG R+G + G++++NPT+DEL S ++LV A
Sbjct: 121 DLENDPDIVAMVAASAALVISGAPFMGPIGGARVGYVNGEYVLNPTLDELKESKMDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKL----S 289
T + +M++ + +E+SE+ + G+ AH ++ I LAE A K+ +++ +
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVTFAHKAMQAVIDGIIELAEHAAKEPFDFQPEDTDA 240
Query: 290 MISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE--ECDEESLQV 347
+ +E +LAEA Y+ +G+ + + KA+E+ + D +
Sbjct: 241 LKAEVKKAVGKDLAEA----------YTIRAKGDRVAALSDAKAKAVEKFAKSDTNPAGI 290
Query: 348 LPKAVDTVRKR----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDT 403
P + +V K ++R+ I+ G+R+DGR +D+VRPI E G LP HGS+LF+RG+T
Sbjct: 291 DPLKLISVFKELEADIVRRSILDTGIRIDGRTVDKVRPILGEVGILPRTHGSALFTRGET 350
Query: 404 QVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAE 463
Q + TLG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA
Sbjct: 351 QAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAW 410
Query: 464 KALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGL 523
+AL +LP + DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL
Sbjct: 411 RALRPMLPAKEDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLIRPVSGIAMGL 470
Query: 524 VSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICE 583
+ E D + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ +
Sbjct: 471 ILEKD-------GFAVLSDILGDEDHLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQ 523
Query: 584 CLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEE 643
L A GR IL+ M + + APR + +P++ T+ D +R +IG G + R+I
Sbjct: 524 ALAQAKGGREHILEEMNKAMDAPREEVGDYAPKIETITIPTDKIREVIGTGGKVIREIVA 583
Query: 644 ETGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAF 700
TG ++ ++D GT+ V A + + K+ +D+I I +E EVG IY G V V ++GAF
Sbjct: 584 TTGAKVDINDEGTVKVSASDGA---KIKAAIDWIKSITQEAEVGAIYDGKVVKVVDFGAF 640
Query: 701 VEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V F G + GL+HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 641 VNFFGAKDGLVHVSQISNERVAKPSDVLKEGQIVKVKLLGFDDRGKTKLSMKVV 694
>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
Length = 706
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/693 (41%), Positives = 437/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+ +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEAQILSEDQMLGAVVFGHEQQQIVIENINALVAQAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV L + + + + + V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTAVLLAQDETLNAGEIHDILGDVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYDGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 658 RVEKVTDYLQMGQEVKVKVMEVDRQGRIRLSIK 690
>gi|402305152|ref|ZP_10824211.1| polyribonucleotide nucleotidyltransferase [Haemophilus sputorum HK
2154]
gi|400376265|gb|EJP29152.1| polyribonucleotide nucleotidyltransferase [Haemophilus sputorum HK
2154]
Length = 712
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/694 (41%), Positives = 432/694 (62%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E LV R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT+ E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + + + H + +E +AGK + ++ + + KV
Sbjct: 186 LMVESEADVLTEEQMLSAVVFGHQQQQVVIENIKEFVREAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAE I + K R +D+I +V L E + S + + + +
Sbjct: 246 KALAEVRIGDAYR--ITEKQARYAQIDEIKAEVIATLTAEDETVSEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+A R+DGR D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRILAGEPRIDGRTKDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEND-------NFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV +Y G VT V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAVYTGKVTRVVDFGAFVSILGGKEGLVHISQITD 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RVSD ++VGQ++ ++ + D + I+L++K
Sbjct: 656 ARVERVSDYLTVGQEVQVKVVEIDRQNRIRLTMK 689
>gi|451940181|ref|YP_007460819.1| polynucleotide phosphorylase/polyadenylase [Bartonella australis
Aust/NH1]
gi|451899568|gb|AGF74031.1| polynucleotide phosphorylase/polyadenylase [Bartonella australis
Aust/NH1]
Length = 733
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/712 (42%), Positives = 440/712 (61%), Gaps = 24/712 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKVEIEWAGRPLTIETGKIARQADGAVIATYGETVVLATVVSAKSAKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E L+ R+IDRPIRPLF G+ ++ Q++ SV+
Sbjct: 61 VNYQEKAYAVGKIPGGYFKREGRPNENETLISRLIDRPIRPLFVDGYKNDTQIIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + L+ I+LAE A K+ +++ +S+
Sbjct: 181 GTESAVLMVESEAQELPEDVMLGAVIFGQKGFQPVLDAIIKLAEVAAKEPRDFTPEDLSD 240
Query: 294 QTLEKVS-NLAEAHIEAVF--TDPSYSKFERGEALDKIGQDV----KKALEEECDEESLQ 346
LEK +AE + + TD K ER A+D I ++ + +EE CD S+
Sbjct: 241 --LEKTMLKMAEQDLRKAYAITD----KQERYAAIDAIKTEIINEFRPKMEENCDF-SVD 293
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ ++ ++R+ I+ G R+DGR L VRPI E G P HGS+LF+RG+TQ L
Sbjct: 294 QIATVFKNLQAMIVRQNILDTGKRIDGRNLSTVRPIKSEVGIFPRTHGSALFTRGETQAL 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 354 VVTTLGTSEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAI 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL +AG+++GL+ E
Sbjct: 414 HPMLPTRESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPIAGIAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 -----GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALE 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR+ IL M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 527 QAKDGRIHILGEMAKALTSARGELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTG 586
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ DGT+ + + + ++E + I+ E EVG +Y+G V E+GAFV F G
Sbjct: 587 AKINIEDDGTIKIASTDAKIIEAAKRWIHSIVD-EPEVGAVYQGTVVKTAEFGAFVNFFG 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
+ GL+H+S+L+ E V++ DVV G ++ ++ IG D RG I+LS+K V +
Sbjct: 646 SRDGLVHISQLTSERVAKTIDVVKEGDKVWVKLIGFDERGKIRLSMKVVDQK 697
>gi|456351638|dbj|BAM86083.1| polyribonucleotide nucleotidyltransferase [Agromonas oligotrophica
S58]
Length = 719
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/700 (42%), Positives = 434/700 (62%), Gaps = 21/700 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + G R + LETGKIAR A+GAVV ET VL+TV ++K S R DFLPLTVDYQE
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAK--SPREGVDFLPLTVDYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF + +E QV+ +VLS D + D
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTVLSHDMEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A SAAL LS +P+ GPIG R+G ++I+NPT+DE++ + L+LV A T +
Sbjct: 126 PDIVALVGASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E + + H + I LAEKA K+ ++ +++I +EK
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRD--VAIIDNAAIEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVL--PKAVDTV 355
+ +AE + + P K +R A+ + + V E E L +
Sbjct: 244 EMLGIAEQDLRTAYAIPI--KQQRYAAVGAVKEKVMAYFFPEGQEPKYDKLRVSAVFKEL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R I+ G R+DGR VR I CE G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 EAKIVRWNILDTGKRIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGE 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++
Sbjct: 362 DEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT RV SEV S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 422 FPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG-------S 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQARDGRIHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++A R + +PR+ T K D +R +IG G + R+I E+TG ++++ DG
Sbjct: 535 LGEMSKALTAARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ V + + M+ ++ + I + E+G IY G V V E+GAFV F G + GL+H+S
Sbjct: 595 TVKVASSDGEAMKAAIKWIKS-IASDPEIGQIYDGTVVKVMEFGAFVNFFGTRDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+L+ + V + +DVV G ++ ++ +G D RG +LS+KAV
Sbjct: 654 QLADKRVQKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|410697463|gb|AFV76531.1| polyribonucleotide nucleotidyltransferase [Thermus oshimai JL-2]
Length = 714
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/721 (43%), Positives = 453/721 (62%), Gaps = 31/721 (4%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
E+G RL+ LETGK A+ A+G+V++ +T VL+T +S+ DFLPLTV+++E+ +A
Sbjct: 17 EVGGRLLVLETGKYAKQASGSVLVRYADTVVLATAQASEEPIQADFLPLTVEFEERHYAV 76
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQ++ +VLS+D K PDI+
Sbjct: 77 GKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKNPPDILG 136
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
A SAAL+LSDIPW GPI +R+G I G F++NPT+ EL S L+LV A +RE LM++
Sbjct: 137 PIAASAALLLSDIPWQGPIAAVRVGLIGGSFVLNPTLQELEESALDLVVAGSREAILMVE 196
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISEQTLEKVSNL 302
A E+ E+ + L AH L+ Q +A+ GK K + + E+ E + L
Sbjct: 197 AGAGEVDEETMVQALEFAHRAMGPILDLQEAMAKALGKPKMAWTPPETLGEEEKEVLYRL 256
Query: 303 A-EAHIEAVFTDPSYSKFERGEALDKIGQD-VKKALEEECD----EESLQVLPKAVDTVR 356
A E + AV + SK ER AL+ + + +AL + D EE + A + +
Sbjct: 257 ALERGLSAVLQ--TASKGERSRALEAFKEALILEALPKGEDGAPLEEKKPLYESAFEEIV 314
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL TVTLG +
Sbjct: 315 RRELRRLVLEEGRRADGRGPKDLRPIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTGRD 374
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++ L T F++HY+FPPF EV + G++RREVGHG LA++AL AVLP E DF
Sbjct: 375 EQIIDDLGIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPKEEDF 434
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV +V+ S+GS+SMATVC G +ALMDAG+P++ VAGV++GLV E D +
Sbjct: 435 PYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRRPVAGVAMGLVWEGDRAV----- 489
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
ILTDILGLED LGDMDFK+AGTR G+TA+Q+D K G+P +++ E L A + RL+IL
Sbjct: 490 --ILTDILGLEDALGDMDFKVAGTREGITALQMDNKVGGLPREVLKEALLQAREARLKIL 547
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
D ME+ + APR + +PR+ +LK D + +IGP G R + EE G + + DGT
Sbjct: 548 DLMEQVLPAPRPELKPFAPRILSLKVPVDKIGLVIGPGGKNVRAL-EELGVEVDIEEDGT 606
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + + EK +++ + RE +VG IY+G VT + +GAF+ G +GLLH+S+
Sbjct: 607 VRIYSSDMAAAEKAKAQIEALT-REAKVGEIYEGTVTKITPFGAFISLFPGTEGLLHISQ 665
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQ 775
++ V RV D + VG + ++ D +G I L RPE +EG +P ++
Sbjct: 666 VAPGRVERVEDHLKVGDVIKVKVHRIDEKGKIDLI------RPE------LEGKIPPRRR 713
Query: 776 A 776
+
Sbjct: 714 S 714
>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris DX-1]
gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris DX-1]
Length = 722
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/699 (42%), Positives = 436/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGK+AR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 AYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A A SAAL LS P+ GPIG R+G I ++++NP +DE++ + L LV A T +
Sbjct: 127 DVLAMVAASAALTLSGAPFRGPIGAARVGFINDEYVLNPVLDEMAETQLELVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E+SE+ + + H ++ I LAEKA K+ +E L I +EK
Sbjct: 187 LMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRE--LIEIDNAAIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ L E + A + P K ER A+ K+ + E E L A +
Sbjct: 245 MLGLIEQELRAAYAIPV--KQERYAAVGKVKEKALAHFFPEGQEPKYDKLRIAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I ++G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE--R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIGGITEEIMKVALGQAKDGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + + R + ++PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + ++ ++ + I + EVG IY+G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGESIKAAIKWIKS-IASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 655 LAAGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|336310484|ref|ZP_08565456.1| polyribonucleotide nucleotidyltransferase [Shewanella sp. HN-41]
gi|335866214|gb|EGM71205.1| polyribonucleotide nucleotidyltransferase [Shewanella sp. HN-41]
Length = 699
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/700 (41%), Positives = 443/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K ++ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+ ++ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAGTESAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK + + E + ++
Sbjct: 188 VESEAQALPEEVMLGSVVYGHEQQQVVIKAIAEFKAEAGKPMWNWTAPVQDETLVAQIKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K ER + + VK+AL + L+ + + ++ K+V+R
Sbjct: 248 LAEAGLGDAYK--IQVKQERYAQVSVVKAAVKEALLASNPDVDLREVDNLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRNGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEAA 697
>gi|394994014|ref|ZP_10386750.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 916]
gi|393805093|gb|EJD66476.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 916]
Length = 707
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/689 (42%), Positives = 443/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI G+F++NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I E+ EKV +LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSEKVKSLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++++ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
D+V +G ++ ++ D +G + LS KAV
Sbjct: 665 DIVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|384439796|ref|YP_005654520.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
gi|359290929|gb|AEV16446.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
Length = 714
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/727 (43%), Positives = 456/727 (62%), Gaps = 31/727 (4%)
Query: 57 ETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDY 116
+ F+ E ++ R + LETGK A+ A+GAV++ ET VL+T +S+ DFLPLTV++
Sbjct: 10 QAFRYETQVAGRPLVLETGKYAKQASGAVLVRYGETVVLATAQASETPIEADFLPLTVEF 69
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
+E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQV+ +VLS+D K
Sbjct: 70 EERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQK 129
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
PDI+ A SAAL+LSDIPW GP+ +R+G I GQ ++NPT+ EL S L+LV A +R
Sbjct: 130 NPPDILGPTAASAALLLSDIPWEGPVAAVRVGLIGGQLVLNPTLQELEESALDLVVAGSR 189
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISEQT 295
E LM++ A+E+ E+ L L AH E L+ Q +A GK K + +SE+
Sbjct: 190 EAILMVEAGAQEVDEETLVQALEFAHREMQPILDLQEAMARALGKPKMAWTPPETLSEEE 249
Query: 296 LEKVSNLAEAH-IEAVFTDPSYSKFERGEALDKIGQD-VKKAL---EEECDEESLQVLPK 350
E LA A + V + SK ER AL+ + + +AL E+ EE+ + L +
Sbjct: 250 KEAFYRLAVARGLSQVLQ--TASKGERSRALEAFAEALILEALPKGEDGTPEEAKKPLYQ 307
Query: 351 -AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A V +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL TV
Sbjct: 308 SAFGEVVRRELRRLVLEEGKRADGRGPRDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV 367
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++ L T++F++HY+FPPF EV + G++RREVGHG LA++AL AV
Sbjct: 368 TLGTGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALKAV 427
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P E DFPYTVRV +V+ S+GS+SMATVC G +ALMDAG+PL+ VAGV++GLV E +
Sbjct: 428 MPKEADFPYTVRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGER 487
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ ILTDILGLED LGDMDFK+AG+R GVTA+Q+D K G+P +++ E L A
Sbjct: 488 AV-------ILTDILGLEDALGDMDFKVAGSRKGVTALQMDNKVGGLPREVLKEALLQAK 540
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+ RL+ILD ME + PR + ++PR+ +LK + + +IGP G R + EE G +
Sbjct: 541 EARLRILDLMESVLPGPRPELKPHAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEV 599
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + + + +K ++V+ + E +VG +Y+G VT + +GAF+ G +
Sbjct: 600 DIEEDGTVRIYSSDMEAAQKAKKRVEELT-MEAKVGEVYEGTVTKITPFGAFISLFPGTE 658
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEG 768
GLLH+S+++ V RV D + VG + ++ D RG I L RPE +EG
Sbjct: 659 GLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------LEG 706
Query: 769 SVPVNKQ 775
+P ++
Sbjct: 707 KIPPRRR 713
>gi|392380807|ref|YP_005030003.1| polynucleotide phosphorylase [Azospirillum brasilense Sp245]
gi|356875771|emb|CCC96519.1| polynucleotide phosphorylase [Azospirillum brasilense Sp245]
Length = 706
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/704 (43%), Positives = 431/704 (61%), Gaps = 18/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ + F++E E G R +T ETGKIAR A+GAV++ ET VL TV +K DF PLT
Sbjct: 1 MFKVFRKEIEWGGRKLTFETGKIARQADGAVLVTYGETTVLCTVVGAKSPKPGVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E+E LV R+IDRPIRPLF GF +E QV+ +VLS
Sbjct: 61 VNYQEKSFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A TSAAL +S IP+ GPIG R+G + GQ+++NPTMD + S L+LV A
Sbjct: 121 DLENDPDIVAMVGTSAALTISGIPFLGPIGAARVGYVDGQYVLNPTMDAVDGSALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+E LM++ +A+E+SE+ + + H + I LAE+ K+ +
Sbjct: 181 GTQEGVLMVESEAKELSEEVMLGAVMFGHSGFQPVINAIIDLAEECAKEPWDLPEPAYDR 240
Query: 294 QTLE-KVSNLAEAHIEAVFTDP-SYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
L+ K+ A +EA +T+ ++E KIG KALE + Q +
Sbjct: 241 AALKAKLRATVGADVEAAYTETVKQVRYE------KIGAAKAKALEALAEAHETQAIVTE 294
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ ++R ++ G R+DGR VRPI E G LP HGS+LF+RG+TQ L TL
Sbjct: 295 FKELEADILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTL 354
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 355 GTSQDEQIIDALQGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLP 414
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ DFPYT+RV SEV S+GS+SMATVCG S++LMDAG PL VAG+++GL+ E D
Sbjct: 415 KKEDFPYTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDD--- 471
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+ L A G
Sbjct: 472 ----GFAVLSDILGDEDHLGDMDFKVAGTDAGITALQMDIKITSITEEIMKIALGQAKDG 527
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + ++ R + N+PR+ + + +R +IG G + R+I E+TG +I +
Sbjct: 528 RLHILGEMSKALTGAREAVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDI 587
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V A + + ++ + I+ E E+ +Y G V V ++GAFV F G + GL
Sbjct: 588 EDDGTVKVAAVDTKAAQAAIDWIKGIVA-EPEMNVVYTGKVVKVVDFGAFVNFLGSRDGL 646
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+SEL+ + V +VSDVVS G + ++ IG D RG +KLS+K V
Sbjct: 647 VHISELAQQRVGKVSDVVSQGDSVKVKVIGFDDRGKVKLSMKQV 690
>gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
indicum S5]
gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
indicum S5]
Length = 722
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 286/702 (40%), Positives = 438/702 (62%), Gaps = 17/702 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQFA 122
E G ++I ++TG++AR A+ AVV+ + +L T V++++ DF PLTV+Y EK+++
Sbjct: 7 EFGGKIIEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNYIEKRYS 66
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP + +REG P + E L+ R+IDRP+RPLFP G+++E QV+A+V+SSDG+ D++
Sbjct: 67 SGRIPGGFKKREGMPSDDETLISRLIDRPLRPLFPDGYFNETQVIATVMSSDGETPADVL 126
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A + AL +SD+P+ GP+G RIGRI GQF++NPT ++ SD+++ A TR+ LMI
Sbjct: 127 AMYGAATALHISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSDMDISLAATRDAILMI 186
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A+E+S++D+ + E + L+ Q +L +AG K+ + ++ ++ V
Sbjct: 187 EAGAKEVSDQDILDAVAFGQREMGRLLDAQEQLRTQAGTPKRAFTPQLVRDEVRGAVREQ 246
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK----AVDTVRKR 358
+ + K E A+D+ +D+++ EE K A + +
Sbjct: 247 FAGRLRDALA--AGGKMEVYSAIDQTKKDLQEHFAAVLGEEEFAAQKKEYMRAFGDLERD 304
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R RI+ EG RVDGR L+EVRPI LP HGS LF+RG+TQ + TLG ++ Q
Sbjct: 305 IMRGRILDEGKRVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTVSDEQ 364
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
+E+L G +M HY+FPP+C+ E G RRE+GHG LA++A+ AVLP DFPY
Sbjct: 365 FVENLEGERRSNYMFHYNFPPYCVGEAGFLRSPGRREIGHGALAKRAIEAVLPQGEDFPY 424
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ V+G+++GL+ E D +
Sbjct: 425 TIRIVSEITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGD-------RFA 477
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDILG+EDHLGDMDFK+AGT G+T++Q+DIK GI L+I+ +E A+ GR+ ILD
Sbjct: 478 VLTDILGIEDHLGDMDFKVAGTSRGITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDR 537
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M + R + + ++PR+ T+ D +R +IG G + R I E+TG +I + DG
Sbjct: 538 MNEALDTHRPELNPHAPRIVTIYVKPDKIRDIIGTGGKVIRGIVEQTGAKIDIDDDGRCL 597
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
V + N+ ++ + + I+ E E+G YKG V V E+GAFVEF Q GLLH+S++
Sbjct: 598 VASANKESLDMAVAIIQGIL-EEPEIGKTYKGKVKKVAEFGAFVEFLPNQDGLLHISQID 656
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
H+ V RVSDV+ G +L ++ I D + G KLS KA+ RP
Sbjct: 657 HKRVERVSDVLQEGDELEVQLIEVDSKTGKYKLSRKALLVRP 698
>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
Length = 700
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/694 (43%), Positives = 434/694 (62%), Gaps = 15/694 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
E EI R + LETG++A+ A+GAV+ +T VL+T SSK DFLPLTV+Y EK
Sbjct: 6 EVEIAGRTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNYLEKA 65
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
++ G IP Y +REGAP E+E L R+IDRPIRPL P GF +E QV+ASVLS D +
Sbjct: 66 YSAGKIPGGYFKREGAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQSMTSE 125
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++ A SAAL +SDIP+GGP+ ++IGR+ GQF+VNP M EL S+L LV A T +
Sbjct: 126 VVGITAASAALAISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSELELVVAGTEDAIQ 185
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A +SE L LAH E K + + L G+ K+ + + E+ +V
Sbjct: 186 MVESGANGLSESVFLDALALAHSEIKKIVAKIVELQAMVGRTKRVVPVEPVGEELERQVR 245
Query: 301 NLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
L I EAV +K +R E D+I D L EE S QV + V
Sbjct: 246 ELVAGPIREAVLI---ANKNDRQERFDQIMADAVDKLGEEDPARSRQV-KEVYHDVEYHE 301
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ I+ + VR DGR ++RPI CE+ LP HGS+LF+RG+TQ L VTLG + QR
Sbjct: 302 VREMILEKKVRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQR 361
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
+++L G + FMLHY+FPPF + E RREVGHG LAE+AL +VLP + FPYT
Sbjct: 362 IDALEGEYFRNFMLHYNFPPFSVGEARPLRSPGRREVGHGKLAERALKSVLPDKEAFPYT 421
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ S+++ S+GS+SMATVCGG++A+MDAG+P+++ VAG+++GL+ + D I
Sbjct: 422 IRIVSDILESNGSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGD-------RVLI 474
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILGLEDHLGDMDFK+ GT+ G+TA+Q+DIK GI +D++ + LE A GR+ IL+ M
Sbjct: 475 LSDILGLEDHLGDMDFKVTGTQEGITALQMDIKIEGITIDLMRQALEQARAGRIHILEKM 534
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
+ +S+PR ++PR+ TL+ D +R +IGP G + R I E G +++V D G +T+
Sbjct: 535 QESLSSPRDSLAPHAPRIYTLQIKTDKIRDVIGPGGKVIRGIIAECGVKVNVDDSGLVTI 594
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ + + ++ ++ V+ + I VG IY G V + ++GAFVE GL+H+S+L+
Sbjct: 595 ASVDEASAQQAIDMVNRLTEEAI-VGKIYMGTVRKIVDFGAFVEILPNVDGLVHISQLAE 653
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V V+D ++ G+Q+ ++ + D +G I+LS K
Sbjct: 654 HRVQSVADELAEGEQVLVKVLEIDRQGKIRLSRK 687
>gi|242278471|ref|YP_002990600.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
salexigens DSM 2638]
gi|242121365|gb|ACS79061.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio salexigens
DSM 2638]
Length = 750
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 426/694 (61%), Gaps = 15/694 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 124
+G+ ITLETG++A NG V++ T VL T D RDF PLT +Y E+ +A G
Sbjct: 14 VGNLDITLETGRMANQTNGTVLIKSGGTVVLVTAVGMPADGPRDFFPLTCNYLERTYAAG 73
Query: 125 VIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
IP Y RRE G P +RE LV R++DRPIRP+FP + EVQV+A+VLS+D +PD++A
Sbjct: 74 RIPGGYFRREVGRPSDRETLVSRLMDRPIRPMFPKAYRDEVQVIATVLSADTDTNPDVLA 133
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS-LSDLNLVYACTREKTLMI 242
SAAL +SD+P+ GP+ R+G + +F++ PT ++ SDLNLV+A TR+ +M+
Sbjct: 134 MTGASAALHISDLPFNGPVAAARVGLVDNEFVLYPTYKGVAEQSDLNLVFAATRDAVIMV 193
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ ++ +SE + L H + + Q L EK G+ K E E+ + V+
Sbjct: 194 EGSSQFLSENTIAEALEWGHEQMAPMFDLQDALREKVGRPKLEVSEPEKDEEVITLVTEN 253
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE--SLQVLPKAVDTVRKRVI 360
A ++ T P K +R A ++ K +EE+ EE + + A+ + K+++
Sbjct: 254 FSADLDKALTIPG--KLDRKAAKSEVKASAKAMIEEKFPEEPERAKAVGDAMADLEKKIV 311
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RKRI+ +GVR+DGR L VR + E NLP+ HGS+LF RG+T L TLG+ + QR
Sbjct: 312 RKRIVEQGVRIDGRDLTTVRNLSMEVSNLPMTHGSALFRRGETSALAVCTLGSTRDEQRF 371
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
E+L+G TKRFMLHY+FPP+C+ E +RRE+GHGTLAE+AL VLP DFP+T+
Sbjct: 372 ETLIGEDTKRFMLHYNFPPYCVGEAKFLRAPSRREIGHGTLAERALRPVLPKAEDFPFTM 431
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SEVM S+GS+SMATVCG +++LMDAG+P+ VAG+++GL E D +Y +L
Sbjct: 432 RVVSEVMDSNGSSSMATVCGTTLSLMDAGVPISAPVAGIAMGLCQEGD-------EYFVL 484
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG ED LGDMDFK+AGT G+TAIQ+DIK +GIP D++ L A R ILD M+
Sbjct: 485 TDILGDEDALGDMDFKVAGTEEGITAIQMDIKISGIPADVLRRALAQAKDARQIILDDMK 544
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ PR + N+P++ L+ + + +R LIGP G + I ET I + D G +++
Sbjct: 545 ETMPEPRAELSVNAPQMEVLQINPEKIRDLIGPGGKNIKAITAETSADIDIEDSGKVSIF 604
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A ++K +E V + + E+G Y G V + E GA VE G +GLLH+S++ E
Sbjct: 605 APTLESLKKTVEMVQY-YDQTAELGKNYVGTVKKILEIGAIVEILPGLEGLLHISQIDVE 663
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
++ V+DVV +GQ+++++ + G I+LS KA
Sbjct: 664 RIAEVTDVVQLGQEITVKVVEVQPNGRIRLSRKA 697
>gi|365093679|ref|ZP_09330740.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. NO-1]
gi|363414163|gb|EHL21317.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. NO-1]
Length = 751
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/707 (41%), Positives = 444/707 (62%), Gaps = 14/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + F+ G + + +ETG+IAR A+GAV++ +D+T VL+TV +SKG +DF PLT
Sbjct: 3 IFNKVTKSFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKGAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF++EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTISL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A ATSAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNVAINAIHELVRDAGKPVWQWEAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAV 352
+ KV+ LA+ + A + +K R +A + V L+ + E +S++V
Sbjct: 243 SLIAKVTTLADDKLRAAYQ--IRNKQARTQACRESYAAVMADLKADGVEFDSVKVEGMLF 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
D + ++R +I+A R+DGR VRPI S LP HGSSLF+RG+TQ L TLG
Sbjct: 301 D-IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQR+++L G RFM+HY+ PPF EVG+ RRE+GHG LA++AL+AVLP
Sbjct: 360 TERDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPT 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ +FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ + +
Sbjct: 420 KEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDAN---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R
Sbjct: 476 ---RFAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEAR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
+ IL M+ +S T+ +P+L T+K + + +R +IG GA+ R + EETG +I++
Sbjct: 533 MHILGKMQEAMSTANTEVSSFAPKLFTMKINPEKIRDVIGKGGAVIRALTEETGCQINIE 592
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+T+ A + E ++++ I E+E+G IY+G VT + ++GA + G+ GLL
Sbjct: 593 EDGTITIAATDADKAEIAKKRIEQITA-EVEIGKIYEGPVTKILDFGALINLLPGKDGLL 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
H+S+++HE V RV D ++ GQ + ++ + D +G +KLS+K ++ RP
Sbjct: 652 HISQIAHERVERVGDYLTEGQIVKVKVMETDEKGRVKLSMKVLADRP 698
>gi|339018216|ref|ZP_08644356.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter tropicalis NBRC 101654]
gi|338752685|dbj|GAA07660.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter tropicalis NBRC 101654]
Length = 730
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/716 (42%), Positives = 440/716 (61%), Gaps = 27/716 (3%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
+ +++E E R + LETGKIAR A+GAVV+ ET VL T +K + +DF PLTV
Sbjct: 16 FKYYRKEIEWAGRPLVLETGKIARQADGAVVVTYGETVVLCTAVGAKNVKAGQDFFPLTV 75
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +REG P E E LV R+IDRPIRPLFP GF +EVQV+A+VL+ D
Sbjct: 76 NYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPIRPLFPEGFRNEVQVIATVLTHD 135
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DP I A SAAL LS IP+ GP+ R+G G FI+NPT++++ + L+LV A
Sbjct: 136 MENDPSIPALIGCSAALTLSGIPFFGPVAAARVGYKDGAFILNPTLEQMKDAALDLVVAG 195
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T E LM++ +A E+SE + + H +E I LAE A K + + EQ
Sbjct: 196 TEEGVLMVESEASELSEDVMLEAVTFGHTAFQPVIEAIISLAEHAAKAPWDLPEASKEEQ 255
Query: 295 TL----EKVSN--LAEAHIEAVFTDPSYSKFER-GEALDKIGQDVKKALEEECDEESLQV 347
L +KV +A+A+ E V +++E+ G A + I ++K EE D ++ +
Sbjct: 256 KLRTRVDKVGRKLIADAYKEKV----KQARYEKIGAAKEAI---LEKLAAEELDVDAAKP 308
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ K ++ V+R ++ G+R+DGR L VRPI E G LP HGSSLF+RG+TQ L
Sbjct: 309 MLKDLEA---DVVRTAVLKTGLRIDGRDLVTVRPIVSEVGILPRAHGSSLFTRGETQALV 365
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q +++L G F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 366 VTTLGTAQDEQVIDALEGEYRTNFLLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIH 425
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP DFPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E
Sbjct: 426 PLLPSRKDFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEG 485
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
K++ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+ L
Sbjct: 486 -------KNFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQ 538
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GRL IL M + ++ RT +P++ TL + +R +IG G + R+I E +G
Sbjct: 539 ARDGRLHILGEMSKALTEGRTDVSSTAPKITTLTVPREKIRDVIGSGGKVIREIVEYSGA 598
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
++ + DGT+T+ A + K +E+++ I+ E E+G IY G V ++GAFV F G
Sbjct: 599 KVDIGDDGTITIAAMSDDQANKAIERINGIVA-EPELGRIYDGKVVKTADFGAFVNFLGA 657
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+ GL+H+SELS V + +DVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 658 RDGLVHISELSQGRVGKTTDVVKQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADI 713
>gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 690
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/700 (41%), Positives = 440/700 (62%), Gaps = 16/700 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ + +K+E E+ + I+LETGK+AR A+GA++ ET +L+TV +K + D+ PL+
Sbjct: 1 MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLFP+ F +EVQ++ +V+S
Sbjct: 61 VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D PDI+A A+SAAL +S +P+ GP+G R+G + G++I+NP+ EL S L+LV A
Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ + ++E+ + ++ H V +E LA++ K + + +SE
Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ N E +A T K ER + +I K+ E+ + V +
Sbjct: 241 VKKKLEENFTEDLTKAFAT---IDKQERSNQISEISDKAKQLFAEDENYSDFNV-NDELK 296
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K+++R I+ R+DGR L +VR I CE G LP HGS+LF+RG+TQ + TLG
Sbjct: 297 NLEKKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGT 356
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ QRLESL G +RFMLHY+FPPF + E G R+G RREVGHG LA +A+ + LPP+
Sbjct: 357 SDDEQRLESLDGQHRERFMLHYNFPPFSVGETG-RIGTGRREVGHGKLAWRAINSSLPPK 415
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT R+ SE+ S+GS+SMA+VCG S+ALMDAG+P++E VAG+++GL+ E D
Sbjct: 416 EEFPYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGD----- 470
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +L+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ + L+ A +GR+
Sbjct: 471 --DFSVLSDILGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRI 528
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M + +S R ++P++ + D + +IG GA R+I E++G ++ V+D
Sbjct: 529 HILGEMNKALSESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVND 588
Query: 654 -GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
G +TV A + ++ + I + E+ IY G V + E+GAFV F G Q GL+H
Sbjct: 589 EGVVTVAAPDEESRNIAMQMIKDITAK-AELNKIYSGKVMKIMEFGAFVNFLGKQDGLVH 647
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+SEL+ + V +V+D+V G ++ ++ IG D RG +KLS+K
Sbjct: 648 ISELATKRVEKVTDIVKEGDEVKVKVIGFD-RGKVKLSMK 686
>gi|423612024|ref|ZP_17587885.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
gi|401247031|gb|EJR53375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
Length = 717
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/694 (42%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q ++ + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEKIVQAVGKEKIAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAEEADADTLGQINEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVK-----SGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|347735476|ref|ZP_08868338.1| polynucleotide phosphorylase/polyadenylase [Azospirillum amazonense
Y2]
gi|346921296|gb|EGY02070.1| polynucleotide phosphorylase/polyadenylase [Azospirillum amazonense
Y2]
Length = 709
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/705 (42%), Positives = 439/705 (62%), Gaps = 18/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + F++E E G R + LETGK+AR A+GAV+ +T VL T +K SV+ DF P
Sbjct: 1 MFKVFRKEMEWGGRKLVLETGKVARQADGAVIATYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK FA G IP + +REG P E+E+L R+IDRPIRPLF GF +EVQV+ +VL
Sbjct: 59 LTVNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFVDGFRNEVQVVCTVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DPDI+A SAAL LS +P+ GPIG R+G G+FI+NPT++++ +DL+LV
Sbjct: 119 SHDLENDPDIVAMIGASAALTLSGLPFLGPIGGARVGYKDGEFILNPTLEQVETTDLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T+E LM++ +A+E+SE+ + + H + I LAE+A K +
Sbjct: 179 VAGTQEGVLMVESEAKELSEEIMLKAVMFGHTAFQSVINLIIDLAEQAAKDPWDLPPPAY 238
Query: 292 SEQTLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
+ L+ K++ L A I A +T K ER EA+ + +AL + + + +
Sbjct: 239 DKAALKAKLNELVGADIRAAYT--LTVKQERYEAISTAKKKAVEALTADG-AHTAEAVGS 295
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ V+R ++ G R+DGR ++RPI E G LP HGSSLF+RG+TQ L T
Sbjct: 296 TFKDLEADVLRGTVLETGKRIDGRTTVDIRPIVAEVGVLPRAHGSSLFTRGETQALVVAT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 356 LGTAQDEQIVDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPLL 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + FPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 416 PSKEAFPYTLRLVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKE---D 472
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
TG +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I DI+ L A
Sbjct: 473 TG----VAVLSDILGDEDHLGDMDFKVAGTEAGVTALQMDIKITSITEDIMKVALAQAKD 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + I R ++N+PR+ + + +R +IG G + R+I E+TG +I
Sbjct: 529 GRLHILGEMAKAIGGARDAVNQNAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKID 588
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V A + + ++ + I+ E E+G IY G V V ++GAFV F G + G
Sbjct: 589 IEDDGTVKVAAVDSKASDAAIKWIKGIVA-EPELGEIYVGKVVKVMDFGAFVNFLGARDG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+SELS + V++V+DVV+ G ++ ++ +G D RG +KLS+K V
Sbjct: 648 LVHISELSPQRVAKVTDVVNQGDEVKVKVLGFDDRGKVKLSMKVV 692
>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase [Candidatus Blochmannia floridanus]
gi|81666682|sp|Q7VQM0.1|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
[Candidatus Blochmannia floridanus]
Length = 697
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/706 (41%), Positives = 442/706 (62%), Gaps = 16/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L + +F+ G + L TG IAR AN AV++ + +T VL TV SS + + + F PL
Sbjct: 1 MLNSIVHKFQYGQHTVVLNTGAIARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLV 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V YQE+ +A G P + RREG P E E+L R+IDRPIRPLFP GF +++Q++A+V+S
Sbjct: 61 VHYQERTYAAGKFPGGFFRREGRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LSDIP+ GPIG R+G I Q+I+NPT ELS S L+LV A
Sbjct: 121 NPQIHPDIVAMIGVSAALSLSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ A +SE+++ + H + ++ +L +KAGK K ++KL +
Sbjct: 181 GTDSNILMVESAACVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKAGKVKYDWKLKDMDI 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAV 352
E +SNL + + V +K +R E L+ I D+ E +E + + +
Sbjct: 241 LLSEYLSNLYRSRVN-VSCLVGVNKKDRQEQLNNIKHDIIDITLREYNENIDVNEVMSFL 299
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ + +++R I+ + VR DGR D +R I +G LP HGS+LF+RGDTQ L T TLG
Sbjct: 300 NNLEIKLLRSSILRDNVRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQ L+ L G RF+LHY+FPP+C E+G RRE+GHG LA++ +LAV+P
Sbjct: 360 TERDAQNLDELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPN 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
N+FPYTVRV SEV S+GS+SMA++CG S+ALMDAG+P++E VAGV++GL+ E
Sbjct: 420 SNEFPYTVRVVSEVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEN----- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
++ IL+DI+ EDH+GDMDFK++GTR G+TA+Q+DIK GI DII + A
Sbjct: 475 --SNFIILSDIISDEDHIGDMDFKVSGTRTGITALQMDIKIKGITYDIIEVSFKKARCAL 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L+ILD M++ I PR +PR+ ++K + D ++ +IG G++ R + E+T I +
Sbjct: 533 LRILDIMDQVIKIPRKDISEFAPRIYSIKINPDKIKDVIGKGGSVIRALTEKTSTIIDIE 592
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
DG + V++ N EK + VD I I I +G IY G VT + ++GAFV G++G
Sbjct: 593 DDGVIKVISLN---AEKAKQAVDRIQEITANIAIGSIYTGRVTHIVDFGAFVTLFAGKEG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
L+H+S+++ + V+RVSD + +GQ++ ++ + D +G ++LS++ ++
Sbjct: 650 LVHISQITEKRVNRVSDYLKLGQEVLVKVLEIDRQGRMRLSMRGIN 695
>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
Length = 714
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/706 (42%), Positives = 436/706 (61%), Gaps = 17/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ T E + G R + LETGK+AR A+GAV+ ET V++TV S+K DFLPLT
Sbjct: 1 MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E+E LV R+IDRPIRPLF G+ + QV+ + LS
Sbjct: 61 VNYQEKTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL LS +P+ GPIG R+ + +FI+NPT+DE++ + L+LV A
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E+ + + H ++ I LAEKA K+ +E + I
Sbjct: 181 GTADAVLMVESEAKELPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKEPRE--IETIDN 238
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA- 351
+EK + + EA + + P K +R A+ + + V E E L A
Sbjct: 239 SEIEKDMRAVGEAELRKAYAIPV--KQDRYAAVGAVKKKVMDHFFPEGQEPKFDKLRIAG 296
Query: 352 -VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ V+R I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 297 VFKELEADVVRNNILDTGLRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA +A+ VL
Sbjct: 357 LGTGEDEQYIDALSGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVL 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 417 PAHHEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG--- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A
Sbjct: 474 ----SRFAVLSDILGDEDHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKD 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M + ++A R + ++PR+ L+ D +R +IG G + R+I E+TG +I+
Sbjct: 530 GRIHILGEMAKALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKIN 589
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + N + ++ + I E EVG IY G V V E+GAFV F G + G
Sbjct: 590 IEDDGTVKVASANGESIRAAIKWIKSITS-EPEVGQIYDGTVVKVMEFGAFVNFFGPKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
L+H+S+L+ V + SDVV G ++ ++ +G D RG ++LS+KAV+
Sbjct: 649 LVHISQLAANRVQKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVN 694
>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
Length = 711
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 440/702 (62%), Gaps = 12/702 (1%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLP 111
T +L +F+ G +T+ETG +AR A AV++ MD+T V TV K + F P
Sbjct: 4 TILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFP 63
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+
Sbjct: 64 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVV 123
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV
Sbjct: 124 SVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLV 183
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T LM++ +A +SE + + H + +E L +AGK K ++ +
Sbjct: 184 VAGTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPV 243
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+E +V+ LA A + + K ER +D I DV +AL + D +
Sbjct: 244 NEALHARVAELAAARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDI 301
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ +V K V+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 302 LGSVEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 361
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 362 GTARDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 421
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 422 SPSEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE--- 478
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A
Sbjct: 479 ----NFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGA 534
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I +
Sbjct: 535 RLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDI 594
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
+DGT+ + A + + + +++ I EIEV IY G VT + ++GAFV GG++GL
Sbjct: 595 EADGTIKIAATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGL 653
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ I D +G I+LS+K
Sbjct: 654 VHISQIADKRVDKVTDYLQMGQEVPVKVIEVDRQGRIRLSMK 695
>gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
ATCC 19624]
gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
ATCC 19624]
Length = 717
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/700 (41%), Positives = 439/700 (62%), Gaps = 14/700 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR ++GAV++ +D+T VL+TV +SK +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLTVDYLEKSY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EVQV+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREGRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G I G++++NP + S ++LV A T LM
Sbjct: 131 PAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVAGTETAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++SE+ + + H + + L AGK ++K E + KV
Sbjct: 191 VESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDAGKPAWDWKAPAKDEALIAKVVA 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
L E + A + +K R +A + VK L E+ E + + + R +R
Sbjct: 251 LGEEKLRAAYQ--IRNKQSRTQACREAYAAVKAGLAEQGVEFDDVKVEGLLFDIEARTVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+I+A R+DGR VRPI LP HGS+LF+RG+TQ L TLG +AQR++
Sbjct: 309 GQILAGEPRIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGTERDAQRID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPENDFPYTV 480
+L G RFMLHY+ PPF E G RVG RRE+GHG LA++AL+AVLP + +FPYT+
Sbjct: 369 ALAGEFEDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALVAVLPTKEEFPYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++LM+AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLMNAGVPLKAHVAGIAMGLIKEDN-------KFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ + + + +PRL T+K + + +R +IG GA R + EETG +I ++ DGT+T+
Sbjct: 541 AAVGEAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTQIDIAEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + E+ +++ I E+E+G +Y+G +T + ++GA V G+ GLLH+S+++HE
Sbjct: 601 STESAKAEEAKRRIEQITA-EVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
V +V+D +S GQ + ++ + D +G +KLS+KA+ RPE
Sbjct: 660 RVEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLERPE 699
>gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase [Shewanella sediminis HAW-EB3]
gi|257096709|sp|A8FYR5.1|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis
HAW-EB3]
Length = 704
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/691 (41%), Positives = 440/691 (63%), Gaps = 12/691 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQEK +
Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PD+
Sbjct: 71 AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GP+G+ R+G G++++NP + +L SDL+L+ A T+ LM
Sbjct: 131 ISMIGTSAALAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLDLIVAGTQGAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + G+ H + + L +A K ++ + + K+ +
Sbjct: 191 VESEAAALPEEVMLGGVVYGHDQQQVVISAINELKAEASKPAWDWTAPVQDADLVAKIKD 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + A + K +R + + K+AL E E L+ + + ++ K+V+R
Sbjct: 251 LAEAEMAAAYQ--IEVKQDRYTQVGVVKSAAKEALLAENPEADLREIDGLLGSLEKQVVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 309 SRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKVD 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 369 SIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 429 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 482 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQ 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I R ++PR+ TLK + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 542 AIGEHRDDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 602 ANGDATKEAIRRIEEITA-EVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSL 751
V+ VSD + VGQ++ ++ + D +G ++LS+
Sbjct: 661 VANVSDYLQVGQEVKVKVMEVDRQGRVRLSM 691
>gi|403383290|ref|ZP_10925347.1| polynucleotide phosphorylase/polyadenylase [Kurthia sp. JC30]
Length = 706
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/698 (41%), Positives = 438/698 (62%), Gaps = 16/698 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
+E R + +E G++A+ ANGAV++ ET VL T+SK DF PLTV+Y+EK +A
Sbjct: 9 YEWAGRPLQVEVGQLAKQANGAVMVRYGETAVLCNATASKKPKQTDFFPLTVNYEEKMYA 68
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG E+ +L R+IDRPIRPLFP GF +EVQV++ V+S+D ++
Sbjct: 69 AGKIPGGFVKREGRASEKAILTSRLIDRPIRPLFPDGFRNEVQVISMVMSADPDCSSEMA 128
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S ALM+SDIP+ GPI +++G I G+FIVNPT+++ S +NLV A T++ M+
Sbjct: 129 AMLGSSLALMVSDIPFDGPIAGVQVGLIDGEFIVNPTVEQEKQSLINLVVAGTKDAINMV 188
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E K + Q ++A + GK+K +L + + +++
Sbjct: 189 EAGALEVPEETMLEAILFGHEEIKKVIAFQEKIAAECGKEKMVVELHELDADLVAEINAA 248
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD-----EESLQVLPKAVDTVRK 357
E + A +Y K R EA++ + +V A E+ E+ L+ + + +D + K
Sbjct: 249 YETKMVAAIQ--TYEKHARDEAIEAVKAEVLAAYTEKIGDAADAEDQLKQVSQVLDKMVK 306
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+R+ I E +R DGR+LDE+RP+ E+G LP HGS LF+RG TQVL TLG+ +E
Sbjct: 307 DEVRRLITDEKIRPDGRKLDEIRPLSSETGLLPRAHGSGLFTRGQTQVLSVCTLGSLSEV 366
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L KRFM HY+FP F + EVG G RRE+GHG L E+ALLAV+P E DFP
Sbjct: 367 QIIDGLGVEENKRFMHHYNFPQFSVGEVGPMRGPGRREIGHGALGERALLAVIPDEKDFP 426
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R SEV+ S+GSTS A++CG +A+MDAG+PL+ VAG+++GLV + D +Y
Sbjct: 427 YTIRCVSEVLESNGSTSQASICGSCLAMMDAGVPLKAPVAGIAMGLVKKGD-------NY 479
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ E LE A +GR+ ILD
Sbjct: 480 AVLTDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGINREILEEALEQAKRGRMIILD 539
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M ++ PR Q +P++ ++ + +R +IGP G KI E TG +I DGT+
Sbjct: 540 SMLATLNGPREQVSTYAPKIEKMQIKPEKIRDVIGPGGKQINKIIEATGVKIDTEQDGTI 599
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + ++++ E ++ I+ RE VG Y G V ++++GAF+E G+ GLLH+SE+
Sbjct: 600 FISSVDSDMIQQAKEMIEAIV-REAHVGEYYLGKVKRIEKFGAFLEIFPGKDGLLHISEI 658
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E + V DV+ +G +L ++CI D + + LS K V
Sbjct: 659 QEERTNNVEDVLKMGDELLVKCIEIDAKHRVNLSRKIV 696
>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase [Bacillus cereus ATCC 10987]
gi|402556072|ref|YP_006597343.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
gi|81409473|sp|Q732R5.1|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10987]
gi|401797282|gb|AFQ11141.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
Length = 712
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQSVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|393722522|ref|ZP_10342449.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. PAMC
26605]
Length = 793
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/704 (41%), Positives = 440/704 (62%), Gaps = 17/704 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFA 122
+ G + +TLETG++AR A+GAV+ + ET VL VT++KG +DF PLTV YQEK A
Sbjct: 10 QWGGKTLTLETGRVARQADGAVMATLGETVVLCAVTAAKGVKEGQDFFPLTVHYQEKYSA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP + +RE E+E L R+IDRPIRPLFP GFY+E+ V+ VLS DG+ +PD++
Sbjct: 70 AGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENEPDVL 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A A SAAL +S +P+ GPIG R+G I G++I+NPT+++ +L+LV A T + +M+
Sbjct: 130 AMVAASAALTISGVPFMGPIGAARVGYIDGEYILNPTVEQTKSGELDLVVAATGQAVMMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ +A+E+SE+ + ++ AH + I LAE+A K E +K+ L
Sbjct: 190 ESEAKELSEEVMLGAVQFAHKACREAANLIIDLAEQAAKDPWEMAEQADLTAAKDKLRKL 249
Query: 303 AEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
I A + TD K +R L ++ ++A + ++ L K V + ++
Sbjct: 250 VGKDIAAAYKVTD----KGQRSHLLYEVRAKAREAFADAAPQDQLAA-GKLVKKLEGEIV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R I+ +G R+DGR ++RPI LP HGS+LF+RG+TQ +CT TLG Q +
Sbjct: 305 RGAILKDGTRIDGRTTTQIRPIEAMVHFLPRAHGSALFTRGETQSICTTTLGTKDAEQMI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP +++FPYT+
Sbjct: 365 DGLTGLSYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTI 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S++ S+GS+SMATVCGGS+++MDAG+PL+ V+G+++GL+ E KD+ +L
Sbjct: 425 RVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG-------KDFAVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I+ L A +GR IL M
Sbjct: 478 SDILGDEDHLGDMDFKVAGTEAGITTMQMDIKIAGITEEIMRVALAQAKEGRAHILGEMA 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
R + R + ++PR+ T D +R +IG G + R+I TG ++ + D G + V
Sbjct: 538 RALDHTREELSAHAPRIETFTIDKTKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKVS 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + ++ ++ + I+ E EVG +Y G V ++ ++GAFV F GG+ GL+HVSE+ +E
Sbjct: 598 SSDTAQIDAAIKWIKGIV-EEAEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
V +VSDV+S GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 657 RVEKVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAELE 700
>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
PRwf-1]
gi|187611275|sp|A5WBT2.1|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
PRwf-1]
Length = 704
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/707 (41%), Positives = 439/707 (62%), Gaps = 19/707 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
+ T EF+ G+ + +ETG+IAR AN +V + +++ V S ++F PLTV
Sbjct: 3 MFNTISREFQYGNEQVVIETGRIARQANSVLVHMGGVSVLVAVVVKSDAKEGQNFFPLTV 62
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP Y +REG P E E L R+IDRPIRPLFP G+ +E+Q+ A+V+SSD
Sbjct: 63 NYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVISSD 122
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K DI A SAAL +SD P+ GPIG R+G I G++++NP+++EL SDL+LV A
Sbjct: 123 KKHYADIAAMIGASAALSISDAPFNGPIGGARVGFINGEYVLNPSIEELKSSDLDLVVAG 182
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+ LM++ +A E+SE + + H + ++ LA+ G QK+++ ++ +
Sbjct: 183 TKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELAKAVGTQKQDFVAPELNAE 242
Query: 295 TLEKV-SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-----EEECDEESLQVL 348
EKV + E EA +++E+ LD+I AL EE E+ Q+
Sbjct: 243 LKEKVTTQFGEQVAEAYAISDKQARYEK---LDEIKAAAIDALAGDPESEEFAEKEAQI- 298
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ + ++ R +R I++ R+DGR LD VR + + G LP HGS+LF+RG+TQ L T
Sbjct: 299 KEIYNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVT 358
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + ++SL G FMLHY+FP + + E G+ RRE+GHG LA + + A
Sbjct: 359 TTLGNSRDVNLIDSLAGTIQDHFMLHYNFPHYSVGETGREGVPKRREIGHGRLARRGVQA 418
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP + FPY +RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E D
Sbjct: 419 MLPDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGD 478
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+ +L+DILG EDHLGDMDFK+AGT+ G+TA+Q+DIK GI DI+ + LE A
Sbjct: 479 R-------FAVLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITSDIMEKALEQA 531
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
H GR+ IL+ M + A RT+ + ++P A ++ ++D +R +IG GA R++ E+TG
Sbjct: 532 HAGRIHILNAMNEVLPASRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAV 591
Query: 649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + D GT+ + +N++ ++ + +++ I E+EVG +YKG V V ++GAFV G
Sbjct: 592 IDIDDNGTIRIFGENKAATKEAIRQIEAITA-EVEVGKVYKGTVARVVDFGAFVTVLPGT 650
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+++ E V VSD +S GQQ+++ D RG IKL++K V
Sbjct: 651 DGLVHISQIADERVESVSDYLSEGQQINVLVQDVDNRGRIKLTMKGV 697
>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase [Chlorobium tepidum TLS]
gi|81790880|sp|Q8KBY3.1|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
Length = 733
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/724 (41%), Positives = 450/724 (62%), Gaps = 39/724 (5%)
Query: 59 FKEEFEIGS-RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVD 115
K++ ++G ++IT+ETGK+A+ A+G+ V+ M++T VL+TV SSK +DF PL V+
Sbjct: 3 IKKKIDLGHGKVITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVE 62
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK A G P + +REG P E+E+L R+IDR +RPLFP G+Y E Q++ SV+SSD
Sbjct: 63 YREKYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDT 122
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
D D++ A SAA+M+SDIP+ P+ +R+GRI G FIVNP ++EL+ SD+++ T
Sbjct: 123 INDADVLGGIAASAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDICIGGT 182
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
+ M++ + +EISE ++ ++ H K Q LA + K K+ + ++ ++
Sbjct: 183 EDTICMLEGEMKEISEAEMLDAIKFGHDAIKKICALQRELAAEVAKPKRPFSPTVAPDEL 242
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKI-GQDVKKALEE----------ECDEES 344
+ V A ++A+ P +K ER E I Q ++K L E D S
Sbjct: 243 VNFVEEHCSAELKALAYTP-LAKEERAEKTKAIYTQTIRKTLTHFTDRVGPDQIEADPTS 301
Query: 345 L-----QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFS 399
++ + + V K+V+R I+ +G R+DGR L++VRPI E G +P HGS+LF+
Sbjct: 302 AFCLNEHMIEECIHAVEKKVMRHMILDDGKRLDGRTLEQVRPISIELGLIPRAHGSALFT 361
Query: 400 RGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHG 459
RG+TQ L T+TLG +AQ +++L KRFMLHY+FPPF + E+G+ G RRE+GHG
Sbjct: 362 RGETQALVTLTLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGEIGRVGGAGRREIGHG 421
Query: 460 TLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGV 519
LAE+A+ V+P E +FPYTVR+ S+++ S+GS+SMA+VCGG++A MD GIPL++ V+G+
Sbjct: 422 NLAERAIKMVMPSEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGI 481
Query: 520 SVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLD 579
++GL+ E D Y +L+DILG EDHLGDMDFK+AGTR G+TA Q+DIK G+
Sbjct: 482 AMGLIKEGD-------RYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYH 534
Query: 580 IICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKR 639
I+ LE A KGRL ILD M I R + +PRL T++ D + +IG G R
Sbjct: 535 ILETALEQARKGRLHILDVMAEAIPESRADIGKYAPRLTTIQIPVDAIGMVIGKGGETIR 594
Query: 640 KIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVK-EY 697
I EETG I++ DGT+T+ + + +E + ++ + EVG IY G V ++ E
Sbjct: 595 SITEETGAEINIDDDGTVTIACSSPEATKAAVETIKTLVSKP-EVGTIYMGKVRDIRDEL 653
Query: 698 GAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-------IKLS 750
GAFVEF GL+H+SE++ E +++VSDV+ VG ++ ++ I DVR + LS
Sbjct: 654 GAFVEFLPKTDGLVHISEIARERIAKVSDVLKVGDRIKVKLI--DVRKDPRTGKTKFALS 711
Query: 751 LKAV 754
+KA+
Sbjct: 712 IKAL 715
>gi|399041724|ref|ZP_10736700.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF122]
gi|398059942|gb|EJL51780.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF122]
Length = 713
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 440/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHSVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESILDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E+ + + H L+ I+LAE A K+ ++++ SE
Sbjct: 181 GTHDAVLMVESEAKELNEEIMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + + EA + + + K ER A+D + VK EE + + + +
Sbjct: 241 LEGEMLKHF-EAELRTAYKNTQ--KAERYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RAHILGEMAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGQKVWVKLLGFDERGKVRLSMKVV 693
>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25090941|sp|Q8K9H5.1|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 707
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/721 (39%), Positives = 449/721 (62%), Gaps = 24/721 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
+F+ G ITLETG +AR A AV+ MD+T V TV K +S + F PLTV+YQE+
Sbjct: 8 KFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + RREG P E E+L R+IDRPIRPLFP GF +E+Q++A+V+S + + +PD
Sbjct: 68 YAVGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ SAAL LS IP+ GPIG R+G + Q+++NPT+D++ S L+LV + T+ L
Sbjct: 128 IISIIGASAALSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLDLVVSGTQNAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +++ +SE + + H + + L+ +A K I+ + K++
Sbjct: 188 MVEAESKVLSEDKILGAIMFGHQQQQVVINNIRSLSNEASKLPWIISYPEINTELELKIT 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE I + ++K ER E L+ + +++ K E + + + + K ++
Sbjct: 248 KLAEKDISNAYL--IFNKQERYEKLNFLKEEIIKLFFSENSNIDISEIEDIFEKIEKNIV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RKRI+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L +VTLG +AQ L
Sbjct: 306 RKRILNNENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNL 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+ HY+FPP+ + E+G RRE+GHG LA+++LLAV+P +DFPYT+
Sbjct: 366 DELLGDKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMPKLDDFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+S+GLV E D Y +L
Sbjct: 426 RIVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDK-------YVLL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK++GT G+TA+Q+DIK GI +I+ L A RL IL+ M+
Sbjct: 479 SDILGDEDHLGDMDFKVSGTEEGITALQMDIKIEGITNEIMRIALNKAKSARLHILNVMK 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ +S PR + +PR+ +K + + ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 539 QALSKPRNEISEFAPRIHKIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTIKIS 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + +++ I EIEVG IY G VT + ++GAF+ G++GL+H+S++S++
Sbjct: 599 ATIGEKAKNAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISNK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDV 779
V +VSD ++V Q +S++ + D +G ++LS+K VE S+ NK ++
Sbjct: 658 RVEKVSDHLTVDQIISVKVLEIDRQGRLRLSIKE------------VENSIISNKSINNI 705
Query: 780 W 780
+
Sbjct: 706 Y 706
>gi|415886620|ref|ZP_11548400.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
MGA3]
gi|387587307|gb|EIJ79630.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
MGA3]
Length = 704
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/689 (42%), Positives = 445/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+FI+NP + ++ SD++LV A T+E M++ A
Sbjct: 135 SLALSISDIPFEGPIAGVTVGRVGGEFIINPGVQQMEQSDMHLVVAGTKEAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + +E Q ++ + GK+K E L + ++ +V + EA +
Sbjct: 195 EVPEEVMLEAIMFGHEEIKRLIEFQEKIVAEIGKEKMEVVLFELDKELEAEVREMCEADM 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
P K R +A++++ +V K E+E DE++L+ + + +D + K +R+ I
Sbjct: 255 IKAIQVPE--KLAREDAINEVKNEVLAKYEEQEADEDTLKQVKQILDNIVKDEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E +R DGR++DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKIRPDGRKVDEIRPLSSEIGILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E +FPYTVR+ SEV
Sbjct: 373 EEKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKEFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D +Y ILTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGD-------NYTILTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
EDHLGDMDFK+AGT GVTA+Q+DIK AG+ +I+ E L+ A KGR+QILD M + IS P
Sbjct: 486 EDHLGDMDFKVAGTPKGVTALQMDIKIAGLSREILEEALQQAKKGRMQILDSMLKTISKP 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + +P++ T+ + + +R +IGP G KI EETG +I + DGT+ + + + +
Sbjct: 546 REHLSKYAPKILTMTINPEKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSIDEEM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ + V +V
Sbjct: 606 NQKAKAIIEDIV-REVEVGQLYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEDRVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVVS+G ++ ++ D +G + LS KAV
Sbjct: 665 DVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|187471095|sp|Q0A7A1.2|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 541 bits (1393), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/704 (41%), Positives = 444/704 (63%), Gaps = 15/704 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
+++ K+ F+ G+ +TLETG +AR A+GAV++ M +T VL T K D + F PLTV
Sbjct: 1 MKSVKKSFQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQV+A+VLS +
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ D DI A SAAL +S IP+ GPIG R+G G++++NPT +E + SDL+LV A
Sbjct: 121 PEVDADIPALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A ++ E+ + + H + ++ L +AGK + ++
Sbjct: 181 TENAVLMVESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAA 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES---LQVLPKA 351
+ +L + A + P K ER + ++ Q +AL E +EE + + A
Sbjct: 241 LETAIKDLVGDDLAAAYQIPE--KQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDA 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ K ++R RI+A R+DGR VRPI E G+LP HGS++F+RG+TQ + TL
Sbjct: 299 FKGLEKDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++++ G ++FMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P
Sbjct: 359 GTGRDAQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+D PY +RV SE+ S+GS+SMATVCG S++LMDAG+P++ VAG+++GL+ E +
Sbjct: 419 AADDCPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDE--- 475
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + LE A +G
Sbjct: 476 ----QFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M IS PR++ +PRL T++ D D +R +IG GA R + EETG I +
Sbjct: 532 RLHILGEMNNAISGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDI 591
Query: 652 S-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
S DG +T+ + +++ ++ +++ + ++EVG +Y+G V+ + ++GAFV G+ GL
Sbjct: 592 SDDGKVTIASADKAAADEARRRIELLTA-DVEVGTVYEGKVSKLMDFGAFVNILPGRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S++S+E V RV D + G + ++ + D +G I+LS+KAV
Sbjct: 651 VHISQISNERVERVGDYLKEGDTVRVKVLEVDRQGRIRLSMKAV 694
>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
ehrlichii MLHE-1]
Length = 720
Score = 541 bits (1393), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/705 (40%), Positives = 445/705 (63%), Gaps = 15/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
++++ K+ F+ G+ +TLETG +AR A+GAV++ M +T VL T K D + F PLT
Sbjct: 22 IVKSVKKSFQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLT 81
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQV+A+VLS
Sbjct: 82 VNYQERTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSM 141
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A SAAL +S IP+ GPIG R+G G++++NPT +E + SDL+LV A
Sbjct: 142 NPEVDADIPALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVA 201
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A ++ E+ + + H + ++ L +AGK + ++
Sbjct: 202 GTENAVLMVESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDA 261
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES---LQVLPK 350
+ +L + A + P K ER + ++ Q +AL E +EE + +
Sbjct: 262 ALETAIKDLVGDDLAAAYQIPE--KQERQNRIGELRQRAVEALGENREEEGGWPEKDVGD 319
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A + K ++R RI+A R+DGR VRPI E G+LP HGS++F+RG+TQ + T
Sbjct: 320 AFKGLEKDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTT 379
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++++ G ++FMLHY+FPP+C+ E G RRE+GHG LA++ + AV+
Sbjct: 380 LGTGRDAQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVM 439
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +D PY +RV SE+ S+GS+SMATVCG S++LMDAG+P++ VAG+++GL+ E +
Sbjct: 440 PAADDCPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDE-- 497
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + LE A +
Sbjct: 498 -----QFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQARE 552
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M IS PR++ +PRL T++ D D +R +IG GA R + EETG I
Sbjct: 553 GRLHILGEMNNAISGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTID 612
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+S DG +T+ + +++ ++ +++ + ++EVG +Y+G V+ + ++GAFV G+ G
Sbjct: 613 ISDDGKVTIASADKAAADEARRRIELLTA-DVEVGTVYEGKVSKLMDFGAFVNILPGRDG 671
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S++S+E V RV D + G + ++ + D +G I+LS+KAV
Sbjct: 672 LVHISQISNERVERVGDYLKEGDTVRVKVLEVDRQGRIRLSMKAV 716
>gi|8928245|sp|O34275.2|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 706
Score = 541 bits (1393), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/693 (41%), Positives = 437/693 (63%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA A + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAAARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + +DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ I D +G I+LS+K
Sbjct: 658 RVDKVTDYLQMGQEVPVKVIEVDRQGRIRLSMK 690
>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|375285729|ref|YP_005106168.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|384181617|ref|YP_005567379.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|423353509|ref|ZP_17331136.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|423374396|ref|ZP_17351734.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|423567298|ref|ZP_17543545.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|423574587|ref|ZP_17550706.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|423604566|ref|ZP_17580459.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
gi|226702618|sp|B7HLE0.1|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782706|sp|B9IV96.1|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|358354256|dbj|BAL19428.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|401089322|gb|EJP97493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|401094308|gb|EJQ02390.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|401212112|gb|EJR18858.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|401214386|gb|EJR21116.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|401245186|gb|EJR51544.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
Length = 712
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|398355878|ref|YP_006401342.1| polyribonucleotide nucleotidyltransferase Pnp [Sinorhizobium fredii
USDA 257]
gi|390131204|gb|AFL54585.1| polyribonucleotide nucleotidyltransferase Pnp [Sinorhizobium fredii
USDA 257]
Length = 717
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/706 (42%), Positives = 435/706 (61%), Gaps = 18/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ ET K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PD+++ A SAAL LS IP+ GPIG R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+E LM++ +A+E+ E + + ++ I+LAE A K+ +E+
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFDPE--DH 238
Query: 294 QTLEKVS-NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLP 349
LE ++AE + + K R A+D + VK+ E E S + +
Sbjct: 239 SALENAMLSIAEDELRNAYK--ITEKAARYAAVDAVKAKVKEHFLPEGIENPAHSAEEIA 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 297 SVFKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G +RFMLHY+FPPF + E G+ RRE+GHG LA +A+ +
Sbjct: 357 TLGTGEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 417 LPEAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEED- 475
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A
Sbjct: 476 ------RFAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GRL IL M + IS R Q +PR+ + D +R +IG G + R+I E+TG +I
Sbjct: 530 GGRLHILGEMAKAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G +
Sbjct: 590 NIEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 649 GLVHISQLASERVAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|375362314|ref|YP_005130353.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731659|ref|ZP_16170782.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|371568308|emb|CCF05158.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073872|gb|EKE46862.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 707
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/689 (42%), Positives = 442/689 (64%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GRI G+F++NPT+D+L SD+NL+ A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E +L I E+ KV +LAE +
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSAKVKSLAEPDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ + K R +A++++ V K EEE DE++++ + + + + K +R+ I
Sbjct: 255 LSAIQ--VHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++ILD M +
Sbjct: 486 EDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILDSMLSTLGES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESS 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G ++ ++ D +G + LS KAV
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|337280295|ref|YP_004619767.1| polyribonucleotide nucleotidyltransferase [Ramlibacter
tataouinensis TTB310]
gi|334731372|gb|AEG93748.1| Candidate polyribonucleotide nucleotidyltransferase protein
[Ramlibacter tataouinensis TTB310]
Length = 743
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/706 (40%), Positives = 438/706 (62%), Gaps = 12/706 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F G +TLETG+IAR + GAVV+ +D+T VL+TV +SK +DF PLT
Sbjct: 3 IFNKVSKTFTWGQHTVTLETGEIARQSGGAVVVNIDDTVVLATVVASKTAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF++EV V+ LS
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFFNEVHVVIHTLSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A TSAAL +S IP+ GPIG R+G + G++++NP + S L+LV A
Sbjct: 123 NPEVDADIAAMIGTSAALAISGIPFAGPIGAARVGYVNGEYVLNPGQTQRKESQLDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++ E+ + + H + + L +AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAINAIHELVREAGKPVWDWQPPAQDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV LAE + A + SK R +AL + V +L+ E E + +
Sbjct: 243 PFIAKVKALAEEKLRAAYQ--IRSKQARTQALREASASVLDSLKAEGSEFDAAKVADLLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R +I+A R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 301 GIESSIVRSQILAGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVTTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RFM HY+ PPF EVG+ RRE+GHG LA++AL A LP +
Sbjct: 361 ERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ + +
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKQGN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + +T+ +P+L T+K + + +R +IG GA+ R + +ETG +I++
Sbjct: 534 HILGKMQEAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTDETGCQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ A + + E+ ++++ I E+E+G +Y+G +T + ++GA + G+ GLLH
Sbjct: 594 DGTITIAATDAAKAEEAKKRIEQITA-EVEIGKVYEGPITKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+S+++HE V +V D +S GQ + ++ + D +G +KLS+KA+ RP
Sbjct: 653 ISQIAHERVEKVGDYLSEGQVVRVKVLETDEKGRVKLSMKALLERP 698
>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0010_16J05]
Length = 718
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/723 (42%), Positives = 435/723 (60%), Gaps = 17/723 (2%)
Query: 43 PPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK 102
PP A G L ++F+ G + +T+ET KIA+ A G+VV+ + +T VL+TV +K
Sbjct: 5 PPEIAAVRLGVYNLNAITKQFQFGDQQVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAK 64
Query: 103 GDSVR---DFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAG 159
S R DF PLTV+YQEK +A G IP + RREG P E+E L R+IDRPIRPLFP G
Sbjct: 65 --SARPGQDFFPLTVNYQEKTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKG 122
Query: 160 FYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219
F +EVQ++ +V+S+D QDPDI A TSAAL +S IP+ GPIG R+G + GQ+++NP
Sbjct: 123 FMNEVQIVCTVVSTDKNQDPDIAAMIGTSAALAISGIPFDGPIGAARVGYVDGQYLLNPG 182
Query: 220 MDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA 279
D L S+LN+ A T LM++ +A+E+SE + + AH E + LA +
Sbjct: 183 YDVLETSELNMTVAGTASAVLMVESEAKELSEDQMLGAVLFAHQEMQAIITAVAELAGEI 242
Query: 280 GKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQD-VKKALEE 338
GK + +++ E +V ++ + + K ER E + ++ V +
Sbjct: 243 GKPRWDWQPEAKDESLFAQVEGAVKSDLGDAYR--ISDKMERQERVRELRDSAVAQLTGA 300
Query: 339 ECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLF 398
E S + V K ++R+R++ R+DGR L VRPI E G LP HGS+LF
Sbjct: 301 ENASHSADDVAGVFSKVEKDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALF 360
Query: 399 SRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGH 458
+RG+TQ L TLG +A +++L G FMLHY+FPP+ + E G G RRE+GH
Sbjct: 361 TRGETQALVVATLGTLRDAALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGH 420
Query: 459 GTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAG 518
G LA + + A LP DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG
Sbjct: 421 GKLARRGVSATLPNSEDFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPVKAPVAG 480
Query: 519 VSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPL 578
V++GLV E + Y +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI
Sbjct: 481 VAMGLVKEGN-------RYAVLTDILGDEDHLGDMDFKVAGTATGVTALQMDIKIDGITE 533
Query: 579 DIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALK 638
+I+ L A + R+ IL M + ISA R + N+P + TL D +R +IG GA
Sbjct: 534 EIMEAALAQAFEARVHILGEMNKVISASREELSANAPAMVTLNVHPDKIRDIIGKGGATI 593
Query: 639 RKIEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEY 697
R I EETG + ++ DG++ + A++ + + + ++ I E EVG IYKG V + ++
Sbjct: 594 RSIVEETGAEVDINDDGSVRIYAEDGAAKDAAVNRIQEITA-EAEVGRIYKGKVERIVDF 652
Query: 698 GAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
GAFV G+ GLLH+S+++ E V V+D +S GQ++ + + D RG IKLS+K +
Sbjct: 653 GAFVNILPGKDGLLHISQIAEERVENVTDYLSEGQEVEVVVLDVDQRGRIKLSIKELENY 712
Query: 758 PEA 760
EA
Sbjct: 713 QEA 715
>gi|187611313|sp|Q12QG9.2|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 443/702 (63%), Gaps = 14/702 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+D+L+ S LNLV A T+ LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGTKAAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+ + + H + ++ +AGK ++ + + + K+
Sbjct: 188 VESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQALVAKIKE 247
Query: 302 LAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + +A + ++ + + + A + D + L + ++ K V+
Sbjct: 248 LAEAGMTDAYQIEVKQDRYVQVGVVKAAAKAALVAENPDVDTREVDNL---LGSLEKNVV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RIIA R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TLG +AQ++
Sbjct: 305 RSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY++
Sbjct: 365 DSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYSI 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M+
Sbjct: 478 SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMD 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ +
Sbjct: 538 QAIGTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ N ++ + +++ I E+EVG +Y G V + ++GAF+ G+ GL+H+S++S E
Sbjct: 598 SSNGEATKEAIRRIEEITA-EVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
V+ VSD + + Q + ++ + D +G ++LS+K + A+
Sbjct: 657 RVANVSDHLEMNQDVKVKVMEVDRQGRVRLSIKEAQEKVAAE 698
>gi|378828391|ref|YP_005191123.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
HH103]
gi|365181443|emb|CCE98298.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
HH103]
Length = 717
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/706 (42%), Positives = 435/706 (61%), Gaps = 18/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ ET K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PD+++ A SAAL LS IP+ GPIG R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+E LM++ +A+E+ E + + ++ I+LAE A K+ +E+
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFDPE--DH 238
Query: 294 QTLEKVS-NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLP 349
LE ++AE + + K R A+D + VK+ E E S + +
Sbjct: 239 SALENAMLSIAEDELRNAYK--ITEKAARYAAVDAVKAKVKEHFLPEGIENPAHSAEEIA 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 297 SVFKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G +RFMLHY+FPPF + E G+ RRE+GHG LA +A+ +
Sbjct: 357 TLGTGEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 417 LPEAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEED- 475
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A
Sbjct: 476 ------RFAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GRL IL M + IS R Q +PR+ + D +R +IG G + R+I E+TG +I
Sbjct: 530 GGRLHILGEMAKAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G +
Sbjct: 590 NIEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 649 GLVHISQLASERVAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|395764551|ref|ZP_10445177.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. DB5-6]
gi|395414378|gb|EJF80821.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. DB5-6]
Length = 733
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/719 (41%), Positives = 442/719 (61%), Gaps = 24/719 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKLYAVGKIPGGYLKRENRPTESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQ 346
+ + LE +AE +I +T K ER A+D + +V EE C + Q
Sbjct: 241 LEKTMLE----MAEQNIRKAYT--ITDKQERYAAIDALKAEVINKFIPETEENCKFSTDQ 294
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ ++ +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 295 I-ATVFKQLQAKIVRGNILDTQKRIDGRDLSTVRPIQSEVSILPRTHGSALFTRGETQAI 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +AL
Sbjct: 354 VVATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAL 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 414 HPMLPSKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 -----GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALE 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 527 QARGGRIHILNEMSKALTSARAELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTG 586
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ DGT+ + + + +E + I+ E EVG IY+G V E+GAFV F G
Sbjct: 587 AKINIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTAEFGAFVNFFG 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+ GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V + A++ G
Sbjct: 646 SRDGLVHISQLASERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGAEITG 704
>gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella
denitrificans OS217]
gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans
OS217]
Length = 701
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 443/702 (63%), Gaps = 14/702 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D RDF PLTV+YQEK +
Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 71 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+D+L+ S LNLV A T+ LM
Sbjct: 131 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGTKAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+ + + H + ++ +AGK ++ + + + K+
Sbjct: 191 VESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQALVAKIKE 250
Query: 302 LAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + +A + ++ + + + A + D + L + ++ K V+
Sbjct: 251 LAEAGMTDAYQIEVKQDRYVQVGVVKAAAKAALVAENPDVDTREVDNL---LGSLEKNVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RIIA R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TLG +AQ++
Sbjct: 308 RSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY++
Sbjct: 368 DSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYSI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L
Sbjct: 428 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMD 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ +
Sbjct: 541 QAIGTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ N ++ + +++ I E+EVG +Y G V + ++GAF+ G+ GL+H+S++S E
Sbjct: 601 SSNGEATKEAIRRIEEITA-EVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
V+ VSD + + Q + ++ + D +G ++LS+K + A+
Sbjct: 660 RVANVSDHLEMNQDVKVKVMEVDRQGRVRLSIKEAQEKVAAE 701
>gi|209883656|ref|YP_002287513.1| polynucleotide phosphorylase/polyadenylase [Oligotropha
carboxidovorans OM5]
gi|337739278|ref|YP_004631006.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM5]
gi|386028297|ref|YP_005949072.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM4]
gi|226702670|sp|B6JCR8.1|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha
carboxidovorans OM5]
gi|336093365|gb|AEI01191.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM4]
gi|336096942|gb|AEI04765.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM5]
Length = 714
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/708 (42%), Positives = 439/708 (62%), Gaps = 23/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ T E + G R + LETGK+AR A+GAV+ ET V++TV S+K DFLPLT
Sbjct: 1 MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ + QV+ + LS
Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL LS +P+ GP+G R+ + +FI+NPT+DE+ + L+LV A
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E+ + + H L+ I LAE+A K+ ++ ++ ++
Sbjct: 181 GTATAVLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPRDV-VATVNA 239
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE------ECDEESLQV 347
+++ + E + ++ P K +R A +G K LE E E L+V
Sbjct: 240 DLEKEILGIVEQDLRKAYSIPV--KQDRYAA---VGAAKDKVLEHFFPEGIEPRYEKLRV 294
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
L D + +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 295 LDVFKD-LEAKIVRWNILDTGRRIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALV 353
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 354 VTTLGTGEDEQYIDSLAGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIH 413
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
VLP ++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 414 PVLPAHHEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG 473
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L
Sbjct: 474 D-------RFAVLSDILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQ 526
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL M + ++A R + ++PR+ L+ D +R +IG G + R+I E+TG
Sbjct: 527 AKDGRMHILGEMAKALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGA 586
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ V + N + ++ + I E EVG IY G V V E+GAFV F G
Sbjct: 587 KINIEDDGTVKVASANGESIRAAIKWIKSITS-EPEVGQIYDGTVVKVMEFGAFVNFFGP 645
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+L+ V + SDVV G ++ ++ +G D RG ++LS+KAV
Sbjct: 646 KDGLVHISQLAASRVQKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAV 693
>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
gi|187470958|sp|A1W4L8.1|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
Length = 727
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/709 (40%), Positives = 440/709 (62%), Gaps = 12/709 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+ G + + +ETG+IAR A+GAV++ +D+T VL+TV SK +DF PLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GFY+EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A A SAAL +S IP+ GPIG R+G + G++++NP S L+LV A
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV+ LAE + A + SK R +AL + V ++L+ E E + +
Sbjct: 243 TFIAKVTALAEGKLRAAYQ--IRSKQARTQALREASASVLESLKGEGVEFDAVKVEALLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG
Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL+A LP +
Sbjct: 361 ERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 421 DEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + +T+ +P+L T+K + + +R +IG GA R + +ETG +I++
Sbjct: 534 HILGKMQEAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ A + ++ +++ I E+EVG IY+G VT + ++GA + G+ GLLH
Sbjct: 594 DGTITIAATEAAKADEAKRRIEEITA-EVEVGKIYEGPVTKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+S+++HE V +V D + GQ + ++ + D +G +KLS+KA++ RP D
Sbjct: 653 ISQIAHERVEKVGDYLQEGQIVKVKVLETDDKGRVKLSMKALADRPAGD 701
>gi|337749997|ref|YP_004644159.1| hypothetical protein KNP414_05765 [Paenibacillus mucilaginosus
KNP414]
gi|379722848|ref|YP_005314979.1| hypothetical protein PM3016_5106 [Paenibacillus mucilaginosus 3016]
gi|386725625|ref|YP_006191951.1| hypothetical protein B2K_26440 [Paenibacillus mucilaginosus K02]
gi|336301186|gb|AEI44289.1| Pnp [Paenibacillus mucilaginosus KNP414]
gi|378571520|gb|AFC31830.1| Pnp [Paenibacillus mucilaginosus 3016]
gi|384092750|gb|AFH64186.1| hypothetical protein B2K_26440 [Paenibacillus mucilaginosus K02]
Length = 700
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/698 (42%), Positives = 437/698 (62%), Gaps = 17/698 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
+ ++G R + LETG++A+ AN AVV +T +L TVT+S DF PLTV+Y+E+ +
Sbjct: 6 QMDLGGRTLILETGRLAKQANAAVVAKYGDTVILCTVTASSEPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP +++REG P E+ +L R+ DRPIRPLFP GF ++VQ+ V+S D P+I
Sbjct: 66 SVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIANIVMSVDQDCSPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GP+G + +GR+ GQF++NPT+++ SD++LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPVGGVIVGRVDGQFVINPTLEQADKSDIHLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A E+ E+ + + H E K + Q +L +AGK K E KL + + V
Sbjct: 186 VEAGADEVPEEVMLEAIMFGHDEIRKIVAVQEQLVAEAGKPKMEVKLHAVDAEVSAAVRE 245
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALE---EECDEESLQVLPKAVDTVRK 357
A+A IEA+ K R EA+D + + K+ E E+ V D V++
Sbjct: 246 FAQARLIEAIKVQ---EKHARQEAIDAVNAEAKEHFALVYAETPEKMADVKETLYDIVKE 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V R+ I + VR DGR LDE+RPI C+ LP HGS LF+RG TQ L TLGA +
Sbjct: 303 EV-RRLITHDKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDV 361
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ + +KRFM HY+FPPF + E RRE+GHG L E+AL ++P E DFP
Sbjct: 362 QILDGIDLEESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALEPIIPNETDFP 421
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SEV+ S+GSTS A++C ++ALMDAG+P++ VAGV++GL+ + GE +
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLALMDAGVPIKAPVAGVAMGLIKD-----GE--HF 474
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DI G+EDHLGDMDFK+AGT GVTA+Q+DIK GI I+ + LE A GR+ IL+
Sbjct: 475 SILSDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGIDRSILTQSLEQAKVGRMHILN 534
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M I P+T + +P++ T++ + D +R +IG G + KI EETG +I + DG +
Sbjct: 535 KMLERIQEPKTSLSKYAPKILTMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRV 594
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + N+ + EK + ++ I+ RE+ VG IY G V ++++GAFVE G+ GL+H+S+L
Sbjct: 595 FIASSNQEMNEKARQIIEGIV-REVIVGEIYLGTVKRIEKFGAFVEILPGKDGLVHISQL 653
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
S E V++V D V +G Q++++ D +G + LS KAV
Sbjct: 654 STERVAKVEDAVKIGDQITVKVTEIDGQGRVNLSRKAV 691
>gi|420260773|ref|ZP_14763443.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|404511794|gb|EKA25659.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
Length = 706
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/698 (41%), Positives = 439/698 (62%), Gaps = 13/698 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA A + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAAARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
V +V+D + +GQ++ ++ I D +G I+LS+K A +P
Sbjct: 658 RVDKVTDYLQMGQEVPVKVIEVDRQGRIRLSMKEATTP 695
>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
Length = 731
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/716 (41%), Positives = 441/716 (61%), Gaps = 18/716 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E LV R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H L+ I+LAE A K +++ +SE
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSE 240
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLP 349
LEK + +AE I +T K ER A+D + ++ E +E+ S +
Sbjct: 241 --LEKAMQKMAEQDIRKAYT--ITDKQERYAAIDALKTEILNKFMPETEEDCKFSADQIA 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 297 TVFKQLQAKIVRGNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+ +
Sbjct: 357 TLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRFGSPGRREIGHGKLAWRAIHPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 417 LPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE--- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A
Sbjct: 474 --GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG +I
Sbjct: 530 GGRIHILNEMAKALTSARAELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + I+ E EVG IY+G V E+GAF+ F G +
Sbjct: 590 NIEDDGTIKIASADAKAIEAAKRWIHSIVD-EPEVGAIYQGTVVKTAEFGAFINFFGSRD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG ++LS+K V + ++ G
Sbjct: 649 GLVHISQLASERVTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQKTGKEITG 704
>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|386311118|ref|YP_006007174.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|418239855|ref|ZP_12866399.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|433551947|ref|ZP_20507987.1| Polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
IP 10393]
gi|187611341|sp|A1JIX3.1|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
W22703]
gi|351780681|gb|EHB22746.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|431787245|emb|CCO71027.1| Polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
IP 10393]
Length = 706
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/693 (41%), Positives = 436/693 (62%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E L +AGK K ++ ++E +V+
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA A + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAAARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P ++FPYTV
Sbjct: 366 DELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTV 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDE-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEV IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + +GQ++ ++ I D +G I+LS+K
Sbjct: 658 RVDKVTDYLQMGQEVPVKVIEVDRQGRIRLSMK 690
>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
succiniciproducens MBEL55E]
gi|81387489|sp|Q65VB0.1|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
Length = 704
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/702 (41%), Positives = 436/702 (62%), Gaps = 12/702 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V +V + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF +E+Q++A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPTM E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E +AGK + ++ + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAEAGKPRWDWVAPEPDSALISKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AE + + K R E +D I DV + E +E S + + ++
Sbjct: 246 KAIAENRLGDAYR--ITEKQVRYEQIDAIKADVIAQITAEDEEVSEGKIVDIFTALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L VTLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L G F+ HY+FPP+ + E G+ RRE+GHG LA++ + AV+P ++FPY
Sbjct: 364 LDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ ISAPR + +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAISAPRAEISEFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + ++ V+ +++ I E+E G +Y G VT + ++GAFV G ++GL+H+S+++
Sbjct: 597 AAVDGNAVKTVMARIEDITA-EVEAGAVYTGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
E V +VSD + VGQ++ ++ + D +G I+L+++ + + E+
Sbjct: 656 ERVEKVSDYLQVGQEVQVKVVEIDRQGRIRLTMRDLGSKEES 697
>gi|437873025|ref|ZP_20848502.1| polynucleotide phosphorylase/polyadenylase, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|435334718|gb|ELP05184.1| polynucleotide phosphorylase/polyadenylase, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
Length = 687
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/698 (41%), Positives = 438/698 (62%), Gaps = 18/698 (2%)
Query: 48 PSVAGTKV--LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GD 104
PS G + L +F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 2 PSKIGKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 105 SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEV 164
+DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EV
Sbjct: 62 PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEV 121
Query: 165 QVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
QV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 181
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
S L+LV A T LM++ +A +SE + + H + ++ L ++AGK +
Sbjct: 182 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRW 241
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE 342
+++ +++ +V+ LAE+ + + TD K ER +D I + + L E +
Sbjct: 242 DWQPEAVNDALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIEQLIAEDET 297
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
L + + + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+
Sbjct: 298 LDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE 357
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA
Sbjct: 358 TQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLA 417
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++G
Sbjct: 418 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 477
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
LV E D +Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+
Sbjct: 478 LVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 530
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
L A RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R +
Sbjct: 531 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALT 590
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
EETG I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 591 EETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFV 649
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739
GG++GL+H+S+++ + V +V+D + +GQ++ ++ +
Sbjct: 650 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 687
>gi|451941493|ref|YP_007462130.1| polynucleotide phosphorylase/polyadenylase [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
gi|451900880|gb|AGF75342.1| polynucleotide phosphorylase/polyadenylase [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
Length = 711
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/709 (42%), Positives = 436/709 (61%), Gaps = 18/709 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A E+ E + + H L+ I+LAE A K +++ +S+
Sbjct: 181 GTESAVLMVESEAHELPEDIMLGAVMFGHKSLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLP 349
LEK + +AE I +T K ER A+D I ++ E DEE S L
Sbjct: 241 --LEKAMRKMAEQDIRKAYT--ITDKQERYAAIDAIKTEITNKFMPETDEECKFSTDQLA 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 297 TVFKQLQAKIVRWNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +AL +
Sbjct: 357 TLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 417 LPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE--- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A
Sbjct: 474 --GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMEIALEQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG +I
Sbjct: 530 EGRIHILNEMAKALTSARAELSEFSPRIEVMNIPVDKIRDVIGSGGKVIREIVEQTGAKI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + I+ E EVG IY+G V E+GAFV F G +
Sbjct: 590 NIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTAEFGAFVNFFGSRD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
GL+H+S+L+ E V + +D+V G ++ + +G D RG ++LS+K + +
Sbjct: 649 GLVHISQLASERVIKTTDIVKEGDKVWGKLMGFDERGKVRLSMKIIDQK 697
>gi|349574284|ref|ZP_08886238.1| polyribonucleotide nucleotidyltransferase [Neisseria shayeganii
871]
gi|348014067|gb|EGY52957.1| polyribonucleotide nucleotidyltransferase [Neisseria shayeganii
871]
Length = 702
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 442/704 (62%), Gaps = 16/704 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +++ETG+IAR A GAV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVSIETGEIARQAAGAVKVSMGDTVVLVAVTANKDVKPGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFPAGFYH++Q++A+V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPAGFYHDIQIVATVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G++++NP+ +L S L+LV A T++ LM
Sbjct: 129 PAMIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPSKTQLQQSQLDLVVAGTQKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+E+ E + + H + + LA++ + +++ + +EK+
Sbjct: 189 VESEAQELPESVMLGAVVYGHEQMQAVIRAINELADEVNPEVWDWQPAETDNALVEKIRE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A A I F K R LD+ VK+AL EE D + + V+
Sbjct: 249 IAGATIGEAFN--IRQKQARSAKLDEAWAAVKEALITEETDTLVANQIKGIFKQLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRPI ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++AL+AVLP +F YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPSPEEFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE A + RL IL M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 EAVDGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITSETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + E ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATSTEAGEAARQRIEQITA-EVEVGKVYEGTVLKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
HE V V+D + VGQ ++++ + D RG ++LS+KA+ P PEA+
Sbjct: 658 HERVKDVNDYLKVGQTVNVKALEVDDRGRVRLSIKALLPMPEAE 701
>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
Length = 735
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/697 (42%), Positives = 436/697 (62%), Gaps = 14/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
+ EFE+ R LETGK+AR A AV + ET VL+TVT+SK DF PLTV+Y+E+
Sbjct: 4 RHEFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEER 63
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E +L R+IDRPIRPLFP GF ++VQ++ VLS D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAP 123
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
+I A TSA+L +SDIP+ GPIG + +G + GQF++NPT+++ SDL+LV A T++
Sbjct: 124 EIAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAI 183
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A ++ E+ + + H + ++ + +I A+K G +K+E +L + +
Sbjct: 184 VMVEAGANQVPEEIVLEAILYGH-QVIQTICDEINAFAQKVGVKKREVELHKVDPELEAA 242
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V A + A +P K R EAL + +V + +E E+ + + + T+ K
Sbjct: 243 VREYATDKVSAAVRNP--DKLAREEALANLNAEVLEHFKETFPEKEADI-AEVMHTILKE 299
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I+ EG+R DGR+LDE+RPI CE G LP HGS+LF+RG TQ L TLG+ + Q
Sbjct: 300 RVREAILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQ 359
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ L + R+M HY+FPPF + E +RR++GHG L E+AL V+P +FPY
Sbjct: 360 LLDGLELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPY 419
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
+RV SE++ S+GSTS A++CG +MALMDAG+P++ VAG+++GLV E D
Sbjct: 420 AIRVVSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGD-------QVA 472
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI G+EDHLGDMDFK+AGT GVTA+Q+DIK +GI I+ L+ A +GR+ IL
Sbjct: 473 ILSDIQGIEDHLGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSK 532
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M IS PR + +PR+ T+K D +R +IGP G + KI EETG +I + DG +
Sbjct: 533 MMEAISEPRADLSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVY 592
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + E V+ I+ R++EVG Y G VT V++YGAFVE G++GL+H+S+L
Sbjct: 593 IHSTDAEQANRAREMVENIV-RDVEVGATYTGKVTRVEKYGAFVEILPGKEGLVHISQLD 651
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V++V DV VG L+++ D +G I LS K V
Sbjct: 652 LNRVAKVEDVCQVGDTLTVKVTEIDNQGRINLSRKEV 688
>gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299]
gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299]
Length = 791
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/714 (41%), Positives = 435/714 (60%), Gaps = 29/714 (4%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQFAQGVIPN 128
+ ETG++AR +GA+V M +++V+ S+ ++ F PL VDY+E+ A G IP
Sbjct: 51 VGFETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPP 110
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
T+ RREGAPK+RE+L R++DR IRPLFP F + V A VL++D QDP ++A N S
Sbjct: 111 TFTRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAVNGAS 170
Query: 189 AALMLSDIPWGGPIGMIRIGRIC--GQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQA 246
AAL +S IPW GP+G +R+ + + I+NP+ ++ S L L YA +TLMI+ QA
Sbjct: 171 AALSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLFYAGNENRTLMIEAQA 230
Query: 247 RE-----ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL-EKVS 300
+ E + + LR AH A +EPQ RL GK+K + + L V
Sbjct: 231 GTADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDPVQQTPEQAKLRHDVF 290
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+ + + A++ + K RG+ + ++ ++ ++ EE + + +A V RV+
Sbjct: 291 DRSSEKLRALYKEEIQCKHTRGKRMAELKDEIVNSMTEEGMSFTNNDVEQAFFWVSSRVM 350
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R I + RVDGR + E+R + ES LP++HGSS+F RG+TQ L TVT+G +AQ+L
Sbjct: 351 RDMIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKL 410
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++ VGP +R MLHYSFP F INE +R GL+RRE+GHG LAEK+L ++P ++P+ V
Sbjct: 411 DAPVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAV 470
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+N+E M S+GS+SMA VC GS+ALMDAG+P++EHV +SVGLV + D TG++ Y +L
Sbjct: 471 RINAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDEQTGKVTRYELL 530
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DI+GLED LGDMDFKIAGTR G+T IQLD KPAGIPLDI+ E ++ A R ++D M+
Sbjct: 531 SDIMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDEMD 590
Query: 601 REISAPRTQDD-RNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD------ 653
R IS PR++DD + + T++ D + RLIGP G R++E TG ++S+ +
Sbjct: 591 RAISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERTTGAKVSIHEEDDAGV 650
Query: 654 ---GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
TL + A R ++ LEK+ I E G + K V + YG F+ Q GL
Sbjct: 651 DDQCTLGIFAGTRPGLDAALEKIQLIAWVPKE-GDVVKAKVVNQLAYGWFLRLPNEQDGL 709
Query: 711 LHVSELSH----EPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRPE 759
LH SE H +P+ ++ +G+++ ++ +DV G + LS+KA+SP PE
Sbjct: 710 LHASEYLHTRKVDPMK--DNIFQIGEEVLVKI--KDVSDGRVGLSVKALSPAPE 759
>gi|403667569|ref|ZP_10932874.1| polynucleotide phosphorylase/polyadenylase [Kurthia sp. JC8E]
Length = 709
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/698 (41%), Positives = 436/698 (62%), Gaps = 16/698 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
+E R + +E G++A+ ANGAV++ ET VLS T+SK DF PLTV+Y+EK +A
Sbjct: 9 YEWAGRPLQIEVGQLAKQANGAVMVRYGETAVLSNATASKKAKQTDFFPLTVNYEEKMYA 68
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG E+ +L R+IDRPIRPLFP GF +EVQV++ V+S+D ++
Sbjct: 69 AGKIPGGFIKREGRSSEKAILTSRLIDRPIRPLFPDGFRNEVQVISMVMSADPDCSSEMA 128
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S ALM+SDIP+GGPI +++G I G+F+VNPT+++ S + L A T++ M+
Sbjct: 129 AMLGSSLALMVSDIPFGGPIAGVQVGMINGEFVVNPTVEQEKYSTIQLTVAGTKDAINMV 188
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+ E+ + + H E K + Q +A + GK+K + L + E +++
Sbjct: 189 EAGALEVPEETMLEAILFGHEEIKKVIAFQEMIAAECGKEKMDVTLHELDETVACEITQQ 248
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-----ECDEESLQVLPKAVDTVRK 357
EA + A +Y K R EA++ + +V EE E EE L+ + +D + K
Sbjct: 249 YEAQMVAAIQ--TYEKHARDEAIEAVKAEVLAVYEEKIGDAEDAEEQLKQVHGILDHMVK 306
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+R+ I E +R DGRQLDE+RP+ E G LP HGS LF+RG TQVL TLG+ +E
Sbjct: 307 TEVRRLITDEKIRPDGRQLDEIRPLSSEVGLLPRAHGSGLFTRGQTQVLSVCTLGSLSEV 366
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L +KRFM HY+FP F + +VG G RRE+GHG L E+ALLAVLP + DFP
Sbjct: 367 QIIDGLGVEESKRFMHHYNFPQFSVGDVGPLRGPGRREIGHGALGERALLAVLPDKEDFP 426
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R SEV+ S+GSTS A++CG +A+MDAG+PL+ VAG+++GLV + D +Y
Sbjct: 427 YTIRCVSEVLESNGSTSQASICGSCLAMMDAGVPLKAPVAGIAMGLVKKGD-------NY 479
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK GI I+ E L A +GR+ IL+
Sbjct: 480 SVLTDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGINRAILEEALAQAKRGRMIILE 539
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M +SAPR Q +P++ ++ + +R +IGP G KI + TG +I DGT+
Sbjct: 540 SMLNTLSAPREQVGTYAPKIEKMQIKPEKVRDVIGPGGKQINKIIDATGVKIDTHQDGTI 599
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + ++E+ + ++ I+ RE +VG + G V ++++GAF+E G+ GLLH+SE+
Sbjct: 600 FISSIEQPMIEEARKMIEAIV-REAQVGEYFIGKVKRIEKFGAFLEVFPGKDGLLHISEI 658
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V DV+ VG +L ++CI D + + LS + V
Sbjct: 659 QEERTDNVEDVLKVGDELKVKCIEVDAKHRVNLSRRVV 696
>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
Length = 713
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/702 (42%), Positives = 438/702 (62%), Gaps = 16/702 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
++F+ G +TLETG +AR A AV+ MD+T VL +V + K +DF PLTV+YQEK
Sbjct: 6 KQFQYGQHTVTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTVNYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVNPQVSP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A TSAAL +S +P+ GPIG R+G I ++++NPT DEL+ S L+LV A T++
Sbjct: 126 DLVAMIGTSAALAISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLDLVVAGTQQAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE + + H ++ A++AGK+K +++ +EKV
Sbjct: 186 LMVESEANLLSEDTMLGAVMFGHESMQVVIDAINEFAQEAGKEKWDWQAPQKDATLVEKV 245
Query: 300 SNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
+LAEA I + TD K ER + ++ Q + + L E +E K V K
Sbjct: 246 KSLAEAGIGEAYRITD----KAERYGKIAEVKQAMIEQLVAENEEADTDEAGKIFHDVEK 301
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R RI+A R+DGR D VR I +G LP HGS+LF+RG+TQ L T TLG +A
Sbjct: 302 DIVRSRILAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDA 361
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L G T RF+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FP
Sbjct: 362 QMIDELTGTSTSRFLLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEEFP 421
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +
Sbjct: 422 YTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDK-------H 474
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AG G+TA+Q+DIK GI DI+ L A RL IL
Sbjct: 475 VVLSDILGDEDHLGDMDFKVAGNNEGITALQMDIKIDGITRDIMESALGQAKAARLHILS 534
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M+ I R + +PR T+K D D ++ +IG GA+ R++ E T I + DGT+
Sbjct: 535 VMDEAIGEHRDELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTI 594
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A +++ + ++++ + EIEVG IY+G V + ++GAFV G+ GL+H+S++
Sbjct: 595 KIAASDQNDADAAIKRIKELTA-EIEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQI 653
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ E V+ V+D + VG + ++ + D +G ++LS+K + +P
Sbjct: 654 AEERVNDVNDYLKVGDTVPVKVLEIDRQGRVRLSMKEAAEKP 695
>gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis
Et1/99]
gi|226702651|sp|B2VGN7.1|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis
Et1/99]
Length = 710
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/700 (41%), Positives = 439/700 (62%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L ++F+ G +TLETG +AR A AV++ MD+T V TV K + F PLT
Sbjct: 1 MLNPIVQKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQGFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE + + H + ++ L +AGK + +++ ++E
Sbjct: 181 GTKGAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+++ LAE+ + + K ER +D I + AL E + + +
Sbjct: 241 ALRSRITALAESRLSDAYR--ITEKQERYAQVDVIKSETSAALLAEDEALDAAEISDLLH 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 ALEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ARDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKG 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + +
Sbjct: 419 DAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEN----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGDKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Chelativorans sp. BNC1]
gi|123161513|sp|Q11BC3.1|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1]
Length = 715
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/705 (42%), Positives = 440/705 (62%), Gaps = 26/705 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ET VL+TV S+K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL D + D
Sbjct: 66 KTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ A SAAL LS +P+ GP+G R+G + G++I+NP +DE++ + L+LV A T +
Sbjct: 126 PDILSMVAASAALTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETKLDLVVAGTSDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSMISEQT 295
LM++ +A E+ E + + H ++ I+LAE A K+ +E+ LS + +
Sbjct: 186 VLMVESEAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKEPREFLPEDLSALEAEM 245
Query: 296 LEKV-SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
L+ V ++L +A+ +K R +A++ VK+A E E+ + P+ V T
Sbjct: 246 LKVVEADLRDAY-------KITNKQARYDAVNAAKAKVKEAFLPEG-AEAYKWTPEQVAT 297
Query: 355 VRK----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
V K +++R I+ G R+DGR L VRPI E G LP HGS++F+RG+TQ L T
Sbjct: 298 VFKALQAKIVRWNILDTGSRIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVAT 357
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 358 LGTGEDEQYVDSLTGTVKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLL 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 PAPEQFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDD-- 475
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK GI +I+ LE A
Sbjct: 476 -----RFAVLSDILGDEDHLGDMDFKVAGTAEGVTSLQMDIKITGITEEIMKVALEQAKD 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M +S R + +PR+ + D +R +IG G + R+I E+TG +I+
Sbjct: 531 GRLHILGEMANALSESRGELGEFAPRIEVMHIPTDKIRDVIGTGGKVIREIVEKTGAKIN 590
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F G + G
Sbjct: 591 IEDDGTVKIASSNGKEIEAARKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ E V + +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 LVHISQLAPERVQKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVV 694
>gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC3088]
gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC3088]
Length = 746
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/693 (42%), Positives = 434/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G + +TLETG+IAR A GAV++ ++ T VL TV ++K +DF PL+V YQEK +
Sbjct: 8 FQYGGQTVTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSVHYQEKSY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLF GF +EVQVM +V+++D DPDI
Sbjct: 68 AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVMCTVMAADDHIDPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREKTL 240
A TSAAL +S +P+ GPIG R+G + +++NP + L SDL++V A T++ L
Sbjct: 128 PAMIGTSAALAISGVPFNGPIGAARVGFNAQEGYLLNPDYNALKGSDLDMVVAGTKDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E + + AH E + L +AGK K +++ ++E +E V
Sbjct: 188 MVESEAKELTEDQMLGAVLFAHQEMQTVIAAINELVAEAGKPKWDWQAPAVNEALVEAVR 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
A A + A + K ER +D+I +AL E D S + +V K ++
Sbjct: 248 AQAGADLGAAYR--ITEKAERYARVDEIRTACVEALAVE-DGPSADDVKDVFKSVEKALV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+RI+A R+DGR VR I C LP +HGS+LF+RG+TQ + VTLG+P +AQ +
Sbjct: 305 RQRILAGEPRIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSPRDAQII 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G FMLHY+FPP+ + E G+ RRE+GHG LA + L AVLP +++FPYT+
Sbjct: 365 DALEGERKDAFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGLAAVLPNQDEFPYTI 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VC GS+A+M AG+PL+ VAG+++GLV E + + +L
Sbjct: 425 RVVSEITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGN-------QFAVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI I+ LE A RL IL M
Sbjct: 478 TDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIEGINEQIMEIALEQALHARLHILGQMN 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
IS R ++P + TLK D+D +R +IG G R I EE+G + + DGT+ +
Sbjct: 538 SVISTAREVTSADAPSMVTLKVDSDKIRDIIGKGGVTIRAITEESGATVDIDDDGTVKIF 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+N++ ++ +E V I E EVG +Y+G V + ++GAFV G+ GL+H+S+++++
Sbjct: 598 GQNQAARDRAVEMV-MEITAEAEVGQVYEGTVARIVDFGAFVTILPGKDGLVHISQIANQ 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +V+D + GQ + ++ + D RG IKLS+K
Sbjct: 657 RVEKVTDFLEEGQTVRVKVLDVDQRGRIKLSIK 689
>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
Length = 701
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/693 (42%), Positives = 432/693 (62%), Gaps = 12/693 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQEKQ 120
+ E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTVDY+E+
Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D PD
Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A +S AL +SDIP+ GP G + +G + G+ ++NPT E +S L+LV + T+++ +
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSKLHLVVSGTKDRVM 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MI+ A+E+ E + + A E K +E + ++ GK K EY+ ++ E+ +KV
Sbjct: 187 MIEAGAKEVPEDIMIEAIMTAQEEIKKIVEFIEGIVKEVGKPKMEYQKRIVPEEIKQKVR 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+A + P K ER + LD++ ++V KA E E EE+L ++ A+ + K ++
Sbjct: 247 EIAYDKVYQYVQIPD--KIERDKKLDELKEEVFKAFEGET-EETLLLVDDALYNLEKEIV 303
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG E Q L
Sbjct: 304 RKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFL 363
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E++FPYT+
Sbjct: 364 DGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSEDEFPYTI 423
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S + +L
Sbjct: 424 RLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGS------FILL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+ILD M+
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQ 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
I PR++ +P++ D + +R +IGP G + KI ET +I + DG + V
Sbjct: 538 TIIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+S+L +
Sbjct: 598 APDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDEK 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +VV VG + ++ IG D G + LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|415924064|ref|ZP_11554830.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
gi|407760420|gb|EKF69718.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
Length = 711
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/700 (42%), Positives = 440/700 (62%), Gaps = 21/700 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG+IAR A+GAVV+ +++T +L+TV + K +DF PLTVDY EK +
Sbjct: 9 FQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLFP G+ +EVQV+ VLS + + DPDI
Sbjct: 69 AAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL L+ IP+ GP+G R+ I GQ+++NPT +L S L+LV A T LM
Sbjct: 129 PAMIGASAALSLAGIPFNGPVGAARVAYIDGQYVLNPTQTQLKSSQLDLVVAGTETAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++SE+ + + H ++ +E L GK + ++ +E + +VS
Sbjct: 189 VESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNEALIARVSQ 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT------V 355
LAE + + + K R E L + V +AL E + V A + +
Sbjct: 249 LAEGPLREAYQ--TKDKQARTEKLKAVSAQVNEALVAEAAANN-GVAADAAEVGSILFDL 305
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 306 EAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTAR 365
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPEN 474
+ Q+++ L+G T RFMLHY+ PPF E G RVG RRE+GHG LA++AL+A LP +
Sbjct: 366 DEQKIDGLLGEYTDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALIAALPAAD 424
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+F Y+VR+ SE+ S+GS+SMA+VCGG +ALMDAG+P++ HVAG+++GL+ E +
Sbjct: 425 EFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGN------ 478
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A +GR
Sbjct: 479 -KFAVLTDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALEQAKEGRHH 537
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
ILD M+ + A R + +PRL T+K + + +R +IG GA+ R + EETG +I +SD
Sbjct: 538 ILDKMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDE 597
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G +T+ + + S ++ +++ + +EVG IY+G V + ++GA V+ G+ GLLH+
Sbjct: 598 GVVTIASVDASAGQEAKRRIEELTA-SVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHI 656
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
S++++E V+ V+D + GQQ+ ++ + D RG +KLS+KA
Sbjct: 657 SQIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKA 696
>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
Length = 714
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 288/705 (40%), Positives = 445/705 (63%), Gaps = 18/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+L +F+ G +T+ETG +AR A AV++ MD+T V TV K + +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E LV R+IDRP+RPLFP GF +EVQ++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPLVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A ++E+ + + H + ++ L + GK+K ++ I++
Sbjct: 181 GTAGAVLMVESEAELLTEEQMLGAVVFGHEQQQIVIDHINALVAETGKEKWDWAPESINQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVK-----KALEEECDEESLQVL 348
++V+ LAE+ + + K ER ++ I ++V +A+E+ + E +VL
Sbjct: 241 PLHDRVAELAESRLGDAYR--ITEKQERYAQVNTIKEEVSAIIVAEAVEKGVELEKSEVL 298
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ + K V+R R++ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L
Sbjct: 299 -DVLSVLEKNVVRGRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVA 357
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ ++ L+G RF+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 358 ATLGTERDAQVIDELMGERADRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 417
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P N+FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 418 VMPTANEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 477
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 478 -------NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQA 530
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I +PR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 531 KGARLHILGVMEQAIQSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 590
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + +++ I E+EVG IY G VT + ++GAFV GG+
Sbjct: 591 IEIEDDGTVKIAATDSDKAHHAIRRIEEITA-EVEVGRIYNGKVTRIVDFGAFVAIGGGK 649
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + + Q++ ++ + D +G I+LS+K
Sbjct: 650 EGLVHISQIADKRVEKVTDYLQLAQEVPVKVLEIDRQGRIRLSMK 694
>gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
12614]
gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
12614]
Length = 709
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 444/705 (62%), Gaps = 16/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + + E E G R + LETGK+AR A+GAV+ ETKVL+TV S+K +DF PLT
Sbjct: 1 MFDIHRVEVEWGGRPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E E L R+IDRPIRPLF G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + PDI+A A+SAAL LS +P+ GPIG R+G I G++++NP +D++ S L+LV A
Sbjct: 121 DLENAPDILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESTLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E + + H ++ I+LAE A K+ +E L SE
Sbjct: 181 GTNDAVLMVESEAKELDEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQ--VLPK 350
KV +AE+ + A + SK +R A+D V +AL E E+++ +L +
Sbjct: 241 -LFGKVKAMAESDLVAAYK--ITSKTDRKNAIDAAKAKVVEALITNAAEGEAVESTILGE 297
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ ++R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L T
Sbjct: 298 QFKKLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVAT 357
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++ L G FMLHY+FPP+ + E G+ RRE+GHG LA +A+ ++
Sbjct: 358 LGTGEDEQYIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMM 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
PP ++FPYTVRV SE+ S+GS+SMATVCG S++LMDAG+PL+ VAG+++GL+ + D
Sbjct: 418 PPHHEFPYTVRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGD-- 475
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ L A
Sbjct: 476 -----RFAVLSDILGDEDHLGDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKD 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M + I+ R + ++PR+ +K D +R +IG G + R+I E+TG +++
Sbjct: 531 GRIHILGEMSKAITEARAELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVN 590
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + ++ + ++ I E EVG IY+G V ++GAFV F G + G
Sbjct: 591 IEDDGTVKIASADGKAIKAAVNWINS-IAAEPEVGMIYEGTVVKCVDFGAFVNFFGAKDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ + V++V+DV+ G ++ ++ +G D RG ++LS+K V
Sbjct: 650 LVHISQLAPKKVAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|424889220|ref|ZP_18312823.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393174769|gb|EJC74813.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 712
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 439/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E+ + + H L+ I+LAE A K+ ++++ SE
Sbjct: 181 GTYDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDHSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKA 351
E + + EA + + K +R A+D + VK E E S +V+
Sbjct: 241 LEAEMLKHF-EAELREGYK--ITQKADRYAAVDAVKAKVKAHFFPEGVEPKYSAEVIGAV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TVEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RVHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
Length = 717
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SD+P+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDADLEQAVRKM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAVDTVRKRVIR 361
AE + A + K R EA++++ Q V EE E + E L + + + + K +R
Sbjct: 250 AEKDMHAAIQ--VHEKHAREEAINEVKQRVIAHYEEQEVEAEVLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DEVRP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTANGVTALQMDIKIDGLSREILEEALQQAKIGRMHILDHMLT 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 AIAEPRKELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
++ + EK + ++ I+ RE++VG IY G V ++++GAFV G+ GL+H+SEL+ E
Sbjct: 601 VDQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRIEKFGAFVGLFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|429089307|ref|ZP_19152039.1| Polyribonucleotide nucleotidyltransferase [Cronobacter universalis
NCTC 9529]
gi|426509110|emb|CCK17151.1| Polyribonucleotide nucleotidyltransferase [Cronobacter universalis
NCTC 9529]
Length = 689
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/686 (42%), Positives = 437/686 (63%), Gaps = 25/686 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV +K +DF PLT++YQE+ +A G IP + RREG
Sbjct: 1 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 60
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 61 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 120
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 121 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 180
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ +E +V LAE+ + + TD
Sbjct: 181 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 240
Query: 314 PSYSKFERGEALDKIGQDVKKALEEE------CDEESLQVLPKAVDTVRKRVIRKRIIAE 367
K ER +D I DV AL+ E DE L + A++ K V+R R++A
Sbjct: 241 ----KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIE---KNVVRSRVLAG 293
Query: 368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G
Sbjct: 294 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGER 353
Query: 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVM 487
T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+
Sbjct: 354 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 413
Query: 488 ASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLE 547
S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE ++ +L+DILG E
Sbjct: 414 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--NFVVLSDILGDE 466
Query: 548 DHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPR 607
DHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 467 DHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 526
Query: 608 TQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVM 666
+ +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ + A +
Sbjct: 527 GDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 586
Query: 667 EKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSD 726
+ + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D
Sbjct: 587 KHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 645
Query: 727 VVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ +GQ++ ++ + D +G ++LS+K
Sbjct: 646 YLQMGQEVPVKVLEVDRQGRVRLSIK 671
>gi|426403537|ref|YP_007022508.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860205|gb|AFY01241.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 697
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/697 (42%), Positives = 431/697 (61%), Gaps = 17/697 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 124
+G + IT+ETG++A+ A+GA ++ VL T TSSK S DF PLTV+Y EK +A G
Sbjct: 9 VGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEYIEKFYATG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP Y +RE P +L+ R+IDRPIRP FP G+ HE Q++A+VLS+DG +I+A+
Sbjct: 69 KIPGGYFKREAKPTNDAVLIARLIDRPIRPSFPEGYRHETQIVATVLSADGAFPLEILAS 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
SAAL SDIP+ GP ++I R+ GQF+ NPT ++ SD++++ A TR LM++
Sbjct: 129 VGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTRNGLLMVEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK-QKKEYKLSMISEQTLEKVSNLA 303
+ + ISE D A L+ H + L Q L EKAG K+ + I K L
Sbjct: 189 ETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSIDADFKGKAEGLL 248
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA-----VDTVRKR 358
+ I A + K +R A ++ + +KAL + ++ L L K V+ ++ +
Sbjct: 249 RSKIAAALS--IKEKQDRYAAANEAAAEAEKALLSDIVDKDLLKLRKKELNAIVEDLKYQ 306
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
R I+ VR+DGR + VRPI E G LP HGS LF+RG+TQVL TVTLG + Q
Sbjct: 307 EARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQ 366
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL+G ++FMLHY+FPP+ + EVG+ G +RRE+GHG LAE+A+ AVLP FPY
Sbjct: 367 MVDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPDFEKFPY 426
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GS+SM TVC G MAL+DAG+PL+ +VAGV++GL+ E D
Sbjct: 427 TIRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGD-------RIA 479
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDILG EDHLGDMDFK+AG+ G+TA+Q+DIK + +++ + L A +GR IL+
Sbjct: 480 VLTDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNE 539
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLT 657
ME+ + PR Q +PR+ T+K D +R +IG G + R I E TG +I + DGT+
Sbjct: 540 MEKVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTIN 599
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + +K + ++ II E EVG YKG + + E+GAFVE QGLLH+SE+S
Sbjct: 600 IASADPEATKKAIAMINDIIA-EAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEIS 658
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+E V VSDV+ G+ + ++ + D G +KLS KA+
Sbjct: 659 NERVRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKAL 695
>gi|328953964|ref|YP_004371298.1| polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
Length = 711
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/709 (42%), Positives = 439/709 (61%), Gaps = 21/709 (2%)
Query: 51 AGTKVL-ETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-- 107
A TK++ +TF E E+G R++ E K+A A+GAV +T VL T +S D +R
Sbjct: 7 AFTKIMAKTF--EVEVGGRILAFEIDKMAAQASGAVFARYGDTGVLVTAVAS--DRLREG 62
Query: 108 -DFLPLTVDYQEKQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQ 165
DFLPLTVDY E +A G IP + RRE G P E+E L R+IDRPIRPLFP GF+HE+Q
Sbjct: 63 IDFLPLTVDYLEMSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKGFFHELQ 122
Query: 166 VMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL 225
++A+VLS D + DPDI+A N SAAL +SDIP+ GPI +R+G++ G+ +VNPT+ +L
Sbjct: 123 IIATVLSVDMENDPDIIALNGASAALAISDIPFQGPIAAVRMGKVGGELMVNPTISQLKE 182
Query: 226 SDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE 285
S LNL+ A + + +M++ A SE+++ L AH E L Q ++ +AGK K+
Sbjct: 183 STLNLIVAGSNDALVMVEGGAELASEEEILEALFTAHAEMQPILRLQEQMRVEAGKTKRP 242
Query: 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+I E +V L+ A I K R +A++ Q V LE E +
Sbjct: 243 VSEIIIDETLKTRVEELSRALILQAIAQAE--KKVRHQAMEDGLQTVLTTLESEYEGREK 300
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
++ D + K ++R ++ + R+DGR ++RPI CE G L HGS+LFSRG+TQ
Sbjct: 301 EITGFYHD-LEKTLVRDLVLNQKRRIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQA 359
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG ++ QR+E+L G K FMLHY+FPP+ + E G +RRE+GHG LAE+A
Sbjct: 360 LAVATLGTVSDEQRIETLTGDTFKAFMLHYNFPPYSVGETRMLRGPSRREIGHGALAERA 419
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
L VLP +FPYT+RV SE+++S+GS+SMATVCGGS+A+MDAGIP++ VAGV++GL+
Sbjct: 420 LSRVLPQPEEFPYTIRVVSEILSSNGSSSMATVCGGSLAMMDAGIPIKAPVAGVAMGLIK 479
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E + + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ + L
Sbjct: 480 EEN-------NIAILSDILGDEDHLGDMDFKVAGTAAGITALQMDIKIGGINREIMSQAL 532
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A + RL IL M I PRTQ N+P++ + + D +R +IGP G + I T
Sbjct: 533 HQAREARLHILSRMNEAIDQPRTQLKENAPKIVVMTINPDKIREVIGPGGKTVKNIVAVT 592
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I + DG + + + + + + + + +E E+G +Y+G V + ++GAFVE
Sbjct: 593 GAKIDIEDDGRIHIASPDALAANQAIRMIQELT-QEPEIGQLYRGKVKKIVDFGAFVEIL 651
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
G GL+H+SEL + V +V+D++ G ++ ++ + D +G I+LS KA
Sbjct: 652 PGTDGLVHISELDKQRVKKVTDILKEGDEVLVKVLDVDRQGKIRLSRKA 700
>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
Length = 717
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/694 (42%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SD+P+ GPI +GRI G+FI+NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEEIMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDATINQDVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + A + K R +A++++ + V + E E D E+L + + + + K +R
Sbjct: 250 AEKDMHAAIQ--VHEKHAREDAINEVKKRVIEHYEANEADGETLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK AG+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIAGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 AIAEPRKELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
++ + EK + ++ I+ RE++VG IY G V V+++GAFV G+ GL+H+SEL+ E
Sbjct: 601 IDQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVGLFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus HD100]
gi|81617621|sp|Q6MMS2.1|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
bacteriovorus HD100]
Length = 697
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/696 (42%), Positives = 427/696 (61%), Gaps = 15/696 (2%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQG 124
+G + IT+ETG++A+ A+GA ++ VL T TSSK S DF PLTV+Y EK +A G
Sbjct: 9 VGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEYIEKFYATG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP Y +RE P +L+ R+IDRPIRP+FP G+ HE Q++A+VLS+DG +I+A+
Sbjct: 69 KIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGAFPLEILAS 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
SAAL SDIP+ GP ++I R+ GQF+ NPT ++ SD++++ A TR LM++
Sbjct: 129 LGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTRNGLLMVEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK-QKKEYKLSMISEQTLEKVSNLA 303
+ + ISE D A L+ H + L Q L EKAG K+ + I K +L
Sbjct: 189 ETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSIDADFKAKAESLL 248
Query: 304 EAHIEAVFT----DPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
I A + Y+ A + A ++E ++ + L V+ ++ +
Sbjct: 249 RPKIAAALSIKEKQDRYAAANEAAAEAEKALLADIA-DKELLKQRKKELNSIVEDLKYQE 307
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
R I+ VR+DGR + VRPI E G LP HGS LF+RG+TQVL TVTLG + Q
Sbjct: 308 ARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQM 367
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++SL+G ++FMLHY+FPP+ + EVG+ G +RRE+GHG LAE+A+ AVLP FPYT
Sbjct: 368 VDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPDFEKFPYT 427
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV+ S+GS+SM TVC G MAL+DAG+PL+ +VAGV++GL+ E D +
Sbjct: 428 IRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVA-------V 480
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDHLGDMDFK+AG+ G+TA+Q+DIK + +++ + L A +GR IL+ M
Sbjct: 481 LTDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEM 540
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTV 658
E+ + PR Q +PR+ T+K D +R +IG G + R I E TG +I + DGT+ +
Sbjct: 541 EKVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTINI 600
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ + +K + ++ II E EVG YKG + + E+GAFVE QGLLH+SE+S+
Sbjct: 601 ASADPEATKKAIAMINDIIA-EAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEISN 659
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V VSDV+ G+ + ++ + D G +KLS KA+
Sbjct: 660 ERVRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKAL 695
>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ATCC BAA-894]
gi|389842510|ref|YP_006344594.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ES15]
gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
gi|387852986|gb|AFK01084.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ES15]
Length = 690
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/686 (42%), Positives = 437/686 (63%), Gaps = 25/686 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV +K +DF PLT++YQE+ +A G IP + RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ +E +V LAE+ + + TD
Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKALEEE------CDEESLQVLPKAVDTVRKRVIRKRIIAE 367
K ER +D I DV AL+ E DE L + A++ K V+R R++A
Sbjct: 242 ----KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIE---KNVVRSRVLAG 294
Query: 368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G
Sbjct: 295 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGER 354
Query: 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVM 487
T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+
Sbjct: 355 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 414
Query: 488 ASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLE 547
S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE ++ +L+DILG E
Sbjct: 415 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--NFVVLSDILGDE 467
Query: 548 DHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPR 607
DHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 468 DHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 527
Query: 608 TQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVM 666
+ +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ + A +
Sbjct: 528 GDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 587
Query: 667 EKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSD 726
+ + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D
Sbjct: 588 KHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 646
Query: 727 VVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ +GQ++ ++ + D +G ++LS+K
Sbjct: 647 YLQMGQEVPVKVLEVDRQGRVRLSIK 672
>gi|351731264|ref|ZP_08948955.1| polynucleotide phosphorylase/polyadenylase [Acidovorax radicis N35]
Length = 746
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/706 (40%), Positives = 441/706 (62%), Gaps = 12/706 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + F+ G + + +ETG+IAR A+GAV++ +D+T VL+TV +SKG +DF PLT
Sbjct: 3 IFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKGAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF++EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTVSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A ATSAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNVAINAIHELVRDAGKPVWQWEAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV LA+ + A + +K R +A + V AL+ + E + +
Sbjct: 243 ALIAKVVALADDKLRAAYQ--IRNKQARTQACREAYAAVMAALKADGVEFDAVKVEGMLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R +I+A R+DGR VRPI LP HGSSLF+RG+TQ L TLG
Sbjct: 301 DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRGSVLPRAHGSSLFTRGETQALVVTTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RFM+HY+ PPF EVG+ RRE+GHG LA++AL+AVLP +
Sbjct: 361 ERDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALIAVLPTK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ + +
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDAN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + +T+ +P+L T+K + + +R +IG GA+ R + EETG +I++
Sbjct: 534 HILGKMQEAMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ A + + ++ ++++ I E+E+G IY+G VT + ++GA + G+ GLLH
Sbjct: 594 DGTITIAATDAAKADEAKKRIEQITA-EVEIGKIYEGPVTKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+S+++HE V RV D ++ GQ + ++ + D +G +KLS+K ++ RP
Sbjct: 653 ISQIAHERVERVGDYLTEGQIVKVKVMETDEKGRVKLSMKVLAERP 698
>gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
fermentans DSM 20731]
gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
fermentans DSM 20731]
Length = 690
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/702 (42%), Positives = 441/702 (62%), Gaps = 19/702 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPL 112
+ +F +F G R +T+ETGKIA+ ANGAV++ ET V+ T + D+ R DF PL
Sbjct: 1 MHSFSTDF--GGRTLTIETGKIAKQANGAVLVRYGETAVVVAATGT--DTPREGVDFFPL 56
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TVD++EK +A G IP ++RREG P E +L R+IDRPIRP+FP G++++VQ++ + +S
Sbjct: 57 TVDFEEKMYAVGKIPGGFLRREGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVS 116
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
D PDI A S AL +SDIP+ GPI +R+G I GQFIV PT+++ +S+LNL
Sbjct: 117 VDPDNAPDIPAMIGASCALSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSELNLAV 176
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T++ LM++ A+E+SE+ + + AH E K +E Q ++ + GK K ++++
Sbjct: 177 AGTKDAILMVEAGAKEVSEEVMLDAIWFAHGEIKKLVEFQEKIQAEVGKPKMDFEVYTPP 236
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
E+ +++ E I DP K R + + + +++ E + + + V
Sbjct: 237 EELAKEIEAYGEPKIHDALMDPD--KLHRDKMVSEAKEEILAHFTELYPDNEIDI-AHVV 293
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ KRV R I + +R DGR LDEVRPI CE G L HG SLF+RG TQVL + L
Sbjct: 294 AKLVKRVFRHIITVDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALA 353
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
EAQ LE+L G KR++ HY+FPP+ + E RRE+GHG LAE+ALL V+P
Sbjct: 354 PLREAQNLETLAGDIQKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPS 413
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GS+SMA+ C +++LMDAG+P++ V+GV++GLV E G
Sbjct: 414 EEEFPYTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKE-----G 468
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E ++ ILTDI GLED GDMDFK+AGT G+TAIQ+DIK G+ DI+ L A KGR
Sbjct: 469 E--NFTILTDIQGLEDANGDMDFKVAGTSKGITAIQMDIKVDGLTKDILQAALAQAKKGR 526
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M I+ PR Q + +P++ T+K + + ++ +IGP G + +KI E+TG +I ++
Sbjct: 527 AFILGKMLECIAEPRKQLKKYAPKITTIKVNPEKIKDIIGPGGKIIKKIVEDTGAQIDIN 586
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A + + ++ + I E EVG IY G VT + +GAFVEF G++GL+
Sbjct: 587 DDGTVYIAAADSESADAAIKTIQDITA-EPEVGKIYTGKVTRIMNFGAFVEFMPGREGLV 645
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
H+S+L+ E V +V DVV+VG ++ ++ + D +G + LS KA
Sbjct: 646 HISQLAKERVEKVEDVVNVGDEIVVKLVEIDSKGRLNLSRKA 687
>gi|397676595|ref|YP_006518133.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397284|gb|AFN56611.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 748
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/697 (43%), Positives = 443/697 (63%), Gaps = 14/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
++E + G + +TLETG++AR A+GAV+ + ET VL VT++K +DF PLTV YQE
Sbjct: 6 RQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K A G IP + +RE ERE L+ R+IDRPIRPLFP GFY+E V+A V+S DG+ +
Sbjct: 66 KYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENE 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G G+FI+NPT+++L SDL+LV TR+
Sbjct: 126 PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVGATRDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A E+ E+ + + AH ++ I LAE+A K+ E +S K
Sbjct: 186 VMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWEL-VSYDDSALAAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V L + + + K ER EAL K + +A E E L++ K + +
Sbjct: 245 VEELCYDNFDKAYR--LTRKAERVEALSKAKAVLDEAFPEADPTEKLRI-QKLAKKLEAK 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ EG R+DGR L VRPI + G LP HGS+LF+RG+TQ L + TLG Q
Sbjct: 302 IVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++ L G +RFMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP + DFPY
Sbjct: 362 MIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV S++ S+GS+SMATVCGG +ALMDAG+PL V+G+++GL+ E D +
Sbjct: 422 TIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKD-------GFA 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI+G EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR IL
Sbjct: 475 ILSDIMGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M + + R++ +PR+ T+ D +R +IG G + R+I TG ++ + DGT+
Sbjct: 535 MSKALGEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVR 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + +E E ++ I+ E EVG IY G V ++ ++GAFV F GG+ GL+HVSE+
Sbjct: 595 LSSSDPANIEAAREWINGIV-EEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIK 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+E V++VSDV+S GQ++ ++ + D RG ++LS++ V
Sbjct: 654 NERVNKVSDVLSEGQEVKVKVLEIDNRGKVRLSMRVV 690
>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisB18]
gi|122477503|sp|Q21C27.1|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisB18]
Length = 715
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/707 (42%), Positives = 438/707 (61%), Gaps = 17/707 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
E + G R + LETGKIAR A+GAVV ET VL+TV ++K DFLPLTVDY EK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLTVDYIEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DPD
Sbjct: 68 YAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A A+SAAL LS P+ GPIG R+G I ++++NPT+DE+ + L+LV A T + L
Sbjct: 128 ILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEMVDTQLDLVVAGTADAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK-V 299
M++ +A+E++E + + H ++ I LAEKA K+ +E ++++ E LEK +
Sbjct: 188 MVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPRE--VAVVDESVLEKEI 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVRK 357
L E + A + P K +R A+ K + V E E L A +
Sbjct: 246 LGLIEPELRAAYAIPV--KQDRYAAVGKAKEKVMAHYFPEGQEPQYDKLRIAGVFKELEA 303
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+++R I+ G R+DGR VR I + G LP HGS+LF+RG+TQ L TLG +
Sbjct: 304 KIVRWNILDTGKRIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDE 363
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++SL G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++FP
Sbjct: 364 QYIDSLSGTYKETFLLHYNFPPYSVGETGRMGGTKRREIGHGKLAWRAIHPVLPPHHEFP 423
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE +
Sbjct: 424 YTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE--RF 476
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR+ IL
Sbjct: 477 AVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILG 536
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT+
Sbjct: 537 EMSKALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTV 596
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
V + + ++ ++ + I + E+ IY G V V E+GAFV F G + GL+H+S+L
Sbjct: 597 KVASSDGESIKAAIKWIKS-IASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQL 655
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+ V + SDVV G ++ ++ +G D RG +LS+K V D++
Sbjct: 656 AAGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDLE 702
>gi|424873085|ref|ZP_18296747.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393168786|gb|EJC68833.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 712
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/706 (41%), Positives = 439/706 (62%), Gaps = 19/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H L+ I+LAE A K+ ++++ + S
Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
E + LAE + + K +R A+D + VK E E + P+ V
Sbjct: 241 LETEML-GLAEGELREAYK--ITQKADRYAAVDAVKAKVKAHFLPE--EGEARYTPEEVG 295
Query: 354 TVRK----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ K +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 296 AIFKHLQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVA 355
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +
Sbjct: 356 TLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPM 415
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 416 LPTPEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD- 474
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A
Sbjct: 475 ------RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQ 528
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR+ IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I
Sbjct: 529 GGRVHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKI 588
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + + I+ E E+G +Y+G V ++GAFV F G +
Sbjct: 589 NIEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQVYEGTVVKTADFGAFVNFFGARD 647
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 648 GLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
273]
gi|123582727|sp|Q3B2E2.1|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
273]
Length = 732
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/732 (40%), Positives = 450/732 (61%), Gaps = 39/732 (5%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSV-RDFLPLTVDYQEKQFAQGV 125
+ I++ETG++A+ A+GA V+ M +T V++TV SS K SV +DF PL V+Y+EK +A G
Sbjct: 13 KTISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQVEYREKYYAAGK 72
Query: 126 IPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAAN 185
P + +RE P E+E+L R+IDR +RPLFP G+YHE QV+ +V+SSD + D D++
Sbjct: 73 FPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYHETQVIINVISSDQQNDADVLGGL 132
Query: 186 ATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQ 245
A SAA+M+SDIP+ + +R+GR+ G FI+NPT+DEL SD+++ T + M++ +
Sbjct: 133 AASAAIMVSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDIDISIGGTADTICMLEGE 192
Query: 246 AREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEA 305
+EISE ++ ++ H K + Q LA + K K+ + + + E V N E+
Sbjct: 193 MKEISEAEMLDAIKFGHEAIKKLCQLQNELAGEVAKAKRPFTPLQVPAELSEYVKNACES 252
Query: 306 HIEAVFTDPSYSKFERGEALDKIGQDVKKALEE---ECDEESL------------QVLPK 350
++ + P + E + VKKA+E E+L ++ +
Sbjct: 253 SLKELAYKPLAKEVRADETKAIYSETVKKAIEHFSAAFGPEALAADPSKALCLNEHIIEE 312
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ + K V+R+ I+ +G R+DGR L++VRPI E G +P HGS+LF+RG+TQ L VT
Sbjct: 313 EIHSFEKNVMRRMILDDGKRLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAVT 372
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ +++L KRFMLHY+FPPF + EVG+ RRE+GHG LAE+++ V
Sbjct: 373 LGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGSTGRREIGHGNLAERSIKMVA 432
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E +FPYTVR+ SE++ S+GS+SMA+VCGG++ALMD G+PL++ V+G+++GL+ +
Sbjct: 433 PGEQEFPYTVRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLIKD---- 488
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE +Y +L+DILG EDHLGDMDFK+AGTR G+TA Q+DIK G+ I+ L A +
Sbjct: 489 -GE--EYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILENALAQARR 545
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR ILD ME I A R + + +PRL ++ +++ +IG G R I EETG I+
Sbjct: 546 GRFHILDKMEEAIPASREELAQYAPRLTAIQVPVESIGLIIGKGGETIRSITEETGAEIN 605
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVK-EYGAFVEFNGGQQ 708
+ DGT+T+ + + +E + +I + EVG IY G V V+ E GAFVEF
Sbjct: 606 IEDDGTVTIACSSNEGTKAAVEIIKALIAKP-EVGTIYVGKVRDVRDELGAFVEFIPKTD 664
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-------IKLSLKAVSPRPEAD 761
GL+H+SE+S E V++VSD + VG ++ ++ + D+R + LS+KAV P
Sbjct: 665 GLVHISEISRERVTKVSDHLKVGDRIKVKLV--DIRKDPRTGKTRFALSMKAVDEEP--- 719
Query: 762 VKGVVEGSVPVN 773
V G G+ P N
Sbjct: 720 VNGTEAGAAPEN 731
>gi|333979916|ref|YP_004517861.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333823397|gb|AEG16060.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 731
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 313/717 (43%), Positives = 448/717 (62%), Gaps = 30/717 (4%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQ 117
+E EIG R + LETG++A A GAV++ +T VL T T SK +VR DF PLTVDY+
Sbjct: 9 KEIEIGGRCLKLETGRVAGQAGGAVLVRYGDTVVLVTATMSK--TVREGIDFFPLTVDYE 66
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
E+ +A G IP +++REG P E+ +L GR+IDRPIRPLFP G +EVQV+A++LS D
Sbjct: 67 ERLYAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKGCRNEVQVVATILSVDQDN 126
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
P+I A SAAL +S+IP+ GPIG + +G + G++++NPT+ + S ++LV A TR+
Sbjct: 127 APEIAAMIGASAALHISEIPFQGPIGGVIVGLVDGEYVINPTLAQAEKSLMHLVVAGTRD 186
Query: 238 KTLMIDVQAREISEKDLEAGLRLAH---PEAVKYLEP--QIRLAEKAGKQKKEYKLSMIS 292
+M++ A+E+ E + G+ H E V+++E + LA K+K L+ +
Sbjct: 187 AVMMVEAGAKEVPEDQILGGITFGHEKVKEIVEFIENFREEALALGLAKEKITPVLAQVD 246
Query: 293 EQTLEKVSNLAEAHIEAVF---TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP 349
Q E VS A + A + K R LD++ + ++ E E+ +L
Sbjct: 247 PQVEEAVSGPAAEELTAAVRQCIERRLDKQAREAFLDEVKAKLVESFRETFPEQEQSIL- 305
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ V K+++R+ I+ EGVR+DGR LDE+RPI E+G LP HGS LF+RG TQVL V
Sbjct: 306 AVIEAVEKKIVRRFILEEGVRIDGRALDEIRPISVEAGILPRTHGSGLFTRGQTQVLSVV 365
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLGA ++ Q L+ L KRFM HY+FPP+ E RRE+GHG LAE+AL V
Sbjct: 366 TLGAISDEQILDDLGIEEAKRFMHHYNFPPYSTGETRPMRSPGRREIGHGALAERALEPV 425
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P E+ FPYT+R+ SEV++S+GSTSM +VCG +ALMDAGIP++ VAGV++GLV E D
Sbjct: 426 IPGEDTFPYTIRLVSEVLSSNGSTSMGSVCGSCVALMDAGIPIKAPVAGVAMGLVKEED- 484
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
ILTDI G+EDHLGDMDFK+AGT G+TA+Q+DIK GI DI+ + L A
Sbjct: 485 ------RVAILTDIQGIEDHLGDMDFKVAGTARGITALQMDIKIPGISADILEKALAQAR 538
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GRL IL+ + I APR + +PR+ D D +R +IGP G + +KI +ETG I
Sbjct: 539 EGRLYILNKILEVIPAPRPELSPYAPRIIHTVIDPDKIREVIGPGGKVIKKIIDETGVEI 598
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF----- 703
+ DG + + A + + ++ LE ++ I +++ VG IY G VT V ++GAFVE
Sbjct: 599 DIEDDGRVYIAAVDPAAAKRALEIIENIT-KDVVVGEIYTGKVTRVTDFGAFVEVVPGVF 657
Query: 704 -NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRP 758
G++GL+H+S L+H V+RV DVV G + ++ IG D +G +KLS K A+ P P
Sbjct: 658 GMPGKEGLVHISHLAHHRVNRVEDVVKEGDTIVVKAIGFDNQGRLKLSRKEALPPEP 714
>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase [Bartonella tribocorum CIP 105476]
gi|189037300|sp|A9IMR9.1|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
CIP 105476]
Length = 731
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/710 (42%), Positives = 439/710 (61%), Gaps = 20/710 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E LV R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP MDE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H L+ I+LAE A K +++ +S+
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
LEK + +AE I +T K ER A+D + ++ E EE Q +
Sbjct: 241 --LEKAMQEMAEQDIRKAYT--ITDKQERYAAIDALKTEIINKFMPET-EEDCQFSTDQI 295
Query: 353 DTVRK----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
TV K +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 296 ATVFKQLQAKIVRGNILDTKKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVV 355
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 356 ATLGTGEDEQYIDALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHP 415
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 416 MLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE-- 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A
Sbjct: 474 ---GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQA 528
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG +
Sbjct: 529 KDGRIHILNEMAKALTSARAELSEFSPRIEVINIAVDKIRDVIGSGGKVIREIVEQTGAK 588
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I++ DGT+ + + + +E + I+ E EVG IY+G V ++GAF+ F G +
Sbjct: 589 INIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTADFGAFINFFGSR 647
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG ++LS+KAV +
Sbjct: 648 DGLVHISQLASERVTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKAVDQK 697
>gi|384411996|ref|YP_005621361.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|335932370|gb|AEH62910.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 748
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/697 (43%), Positives = 443/697 (63%), Gaps = 14/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
++E + G + +TLETG++AR A+GAV+ + ET VL VT++K +DF PLTV YQE
Sbjct: 6 RQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K A G IP + +RE ERE L+ R+IDRPIRPLFP GFY+E V+A V+S DG+ +
Sbjct: 66 KYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENE 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G G+FI+NPT+++L SDL+LV TR+
Sbjct: 126 PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVGATRDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A E+ E+ + + AH ++ I LAE+A K+ E +S K
Sbjct: 186 VMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWEL-VSYDDSALAAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V L + + + K ER EAL K + +A E E L++ K + +
Sbjct: 245 VEELCYDNFDKAYR--LTRKAERVEALSKAKAVLDEAFPEADPTEKLRI-QKLAKKLEAK 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ EG R+DGR L VRPI + G LP HGS+LF+RG+TQ L + TLG Q
Sbjct: 302 IVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++ L G +RFMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP + DFPY
Sbjct: 362 MIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV S++ S+GS+SMATVCGG +ALMDAG+PL V+G+++GL+ E D +
Sbjct: 422 TIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKD-------GFA 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI+G EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR IL
Sbjct: 475 ILSDIMGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M + + R++ +PR+ T+ D +R +IG G + R+I TG ++ + DGT+
Sbjct: 535 MSKALGEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVR 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + +E E ++ I+ E EVG IY G V ++ ++GAFV F GG+ GL+HVSE+
Sbjct: 595 LSSSDPANIEAAREWINGIV-EEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIK 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+E V++VSDV+S GQ++ ++ + D RG ++LS++ V
Sbjct: 654 NERVNKVSDVLSEGQEVKVKVLEIDNRGKVRLSMRVV 690
>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisA53]
gi|122298071|sp|Q07V82.1|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisA53]
Length = 721
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/699 (43%), Positives = 436/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K + V DFLPLTVDY EK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGV-DFLPLTVDYIEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A ATSAAL LS P+ GPIG R+G I ++++NP +DE+ + L+LV A T +
Sbjct: 127 DILALVATSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMIETQLDLVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E + + H ++ I LAEKA K+ ++ K+ I E LEK
Sbjct: 187 LMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPRDVKV--IDESVLEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA--VDTVR 356
+ L E + A + P K +R A+ K V E E L A +
Sbjct: 245 ILGLIEQDLRAAYAIPV--KQDRYAAVGKAKDKVMAHYFPEGQEPQYDKLRIAGVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G ++F+LHY+FPPF + E G+ G RRE+GHG LA +AL VLPP ++F
Sbjct: 363 EQYIDSLSGTYKEQFLLHYNFPPFSVGETGRMGGTKRREIGHGKLAWRALHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ AG+++GL+ E GE
Sbjct: 423 PYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILE-----GE--R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A +GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTDHGITSLQMDIKIAGITEEIMKVALGQAKEGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++ R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIDDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + ++ ++ + I + E+ IY G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGESIKAAIKWIKS-IASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ V + SDVV G ++ ++ +G D RG +LS+K V
Sbjct: 655 LAAGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|392547861|ref|ZP_10294998.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas rubra
ATCC 29570]
Length = 704
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/704 (41%), Positives = 452/704 (64%), Gaps = 19/704 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTV 114
++ +EF++G +TLETG IAR A+GAV+ + +T VL TV + + +DF PLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAAPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP +++REG P + E L+ R+IDRPIRPLFP GF +EVQV+A+V+SS+
Sbjct: 61 NYQEKMYAAGRIPGGFLKREGRPSDNETLIARLIDRPIRPLFPDGFVNEVQVIATVVSSN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ PD++A TSAAL +S +P+ GPIG +R+G GQ+++NP++ EL S L+LV A
Sbjct: 121 PEIQPDMVAMIGTSAALAISGVPFNGPIGAVRVGFTDGQYVLNPSVTELEQSKLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A ++E+++ + H ++ ++ A +AGK ++ + +
Sbjct: 181 TEGAVLMVESEAEILTEEEMLGAVVYGHEQSQAIIQAVNEFAAEAGKPAWDWAAPEKNVE 240
Query: 295 TLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE-CDEESL--QVLP 349
+K++ +AE + + TD K R +AL + +V + L E ++E+L Q +
Sbjct: 241 LSDKIAAIAEQKVGDAYRITD----KVARKDALSEAKAEVVEKLTAELAEDEALDEQEVS 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
K ++ K+++R RIIA R+DGR+ D VR + +G LP HGS++F+RG+TQ L T
Sbjct: 297 KLFSSLEKKIVRGRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG ++Q +++L+G FMLHY+FPPFC+ E G RRE+GHG LA++ + AV
Sbjct: 357 TLGTERDSQMMDNLIGTQKHHFMLHYNFPPFCVGETGFIGSPKRREIGHGNLAKRGVQAV 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P +FPY+VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 417 MPTLEEFPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKE--- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE D+ +L+DILG EDHLGDMDFK+AG GVTA+Q+DIK GI +I+ L A
Sbjct: 474 --GE--DFVVLSDILGDEDHLGDMDFKVAGNSAGVTALQMDIKIEGITKEIMQIALRQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL M++ I++P +PR+ T+ + +IG GA+ R++ EET I
Sbjct: 530 AARLHILSVMDQAIASPSQDLSEFAPRIYTMNIPPKKIADVIGKGGAVIRQLTEETDTTI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A N + ++ + +++ + E+EVG IY G V + ++GAFV G+
Sbjct: 590 EIEDDGTIKIAATNGNSAKEAIARIEALTA-ELEVGTIYTGKVNRIVDFGAFVNVLPGKD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GL+H+S++S E V+ V+D +SVGQ++ ++ + D +G ++LS+K
Sbjct: 649 GLVHISQISKERVNNVADHLSVGQEVKVKVLEVDRQGRVRLSIK 692
>gi|388569739|ref|ZP_10156126.1| polynucleotide phosphorylase/polyadenylase [Hydrogenophaga sp. PBC]
gi|388263029|gb|EIK88632.1| polynucleotide phosphorylase/polyadenylase [Hydrogenophaga sp. PBC]
Length = 743
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/698 (41%), Positives = 441/698 (63%), Gaps = 14/698 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR ++GAV+L MD T VL+TV + S+ + +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQSSGAVLLDMDGTVVLATVVAKSEAKAGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EVQV+ LS + + D DI
Sbjct: 71 AAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVIHTLSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G + GQ+++NP E S ++LV A T+ LM
Sbjct: 131 AAMIATSAALSISGIPFNGPIGAARVGYVNGQYVLNPGQTERKGSQMDLVVAGTQAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++SE+ + G+ H +A + L AGK + +++ E + KV
Sbjct: 191 VESEALQLSEEVMLGGVVFGHEQANIAINAINELVRDAGKPEWQWQAPARDEALIAKVEE 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAVDTVRKRVI 360
L + A + +K R +A + V L+ E +S++V D + ++
Sbjct: 251 LGGDKLRAAYQ--IRNKQARTQACREAYAAVMSGLKAAGIEFDSVKVEGLLFD-IEAGIV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+A R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG +AQR+
Sbjct: 308 RGQILAGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTDRDAQRI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G RFMLHY+ PPF E G+ RRE+GHG LA++AL+A LP + DFPYT+
Sbjct: 368 DALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPTKEDFPYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG +ALMDAG+P++ HVAG+++GL+ + + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKDAN-------RFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ +T+ +P+L T+K + + +R +IG GA+ R + EETG +I++ DGT+T+
Sbjct: 541 EAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + ++ ++ I E+EVG +Y+G +T + ++GA V G+ GLLH+S+++HE
Sbjct: 601 ATDGAKADEAKRRIGEITA-EVEVGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
V +V+D + GQ + ++ + D +G +KLS+KA+ R
Sbjct: 660 RVEKVTDYLQEGQIVKVKVLETDEKGRVKLSMKALLER 697
>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
Length = 701
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/699 (42%), Positives = 433/699 (61%), Gaps = 12/699 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
+E+ + E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTV
Sbjct: 1 MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D
Sbjct: 61 DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PD++A +S AL +SDIP+ GP G + +G + G+ ++NPT E +S L+LV +
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+++ +MI+ A+E+ E + + A E K +E + + GK K EY+ ++ E+
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPEE 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+KV +A + P K ER + LD++ ++V KA E E EE+L ++ A+
Sbjct: 241 IKQKVREIAYDKVYQYVQIPD--KIERDKKLDELKEEVFKAFEGET-EETLLLVDDALYN 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++RK + EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG
Sbjct: 298 LEKEIVRKMVAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
E Q L+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E+
Sbjct: 358 GEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSED 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S
Sbjct: 418 EFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGS---- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+
Sbjct: 474 --FILLTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAREARLK 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M+ I PR++ +P++ D + +R +IGP G + KI ET +I + D
Sbjct: 532 ILDFMQTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+
Sbjct: 592 GRIFVAAPDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+L + V +VV VG + ++ IG D G + LS K
Sbjct: 651 SQLDERRLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
thermophilus DSM 20745]
gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
thermophilus DSM 20745]
Length = 790
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/699 (43%), Positives = 443/699 (63%), Gaps = 16/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
E+ R +T+ETG++A A+GAV + +T VL+TV + DF PLTVDY+EK +
Sbjct: 16 IEVAGRRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDYEEKMY 75
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E +L R+ DRPIRPLFP G+ EVQV+ +VLS+D + PD+
Sbjct: 76 AAGKIPGGFIKREGRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAPDV 135
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ SAALMLS IPW GP+G +RIG I G+ +VNPT +L S L++V A T + +M
Sbjct: 136 LSIIGASAALMLSPIPWAGPVGAVRIGDIDGELVVNPTEHQLIDSKLDMVVAGTADAVMM 195
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A EISE + LAH E + + Q L E AGK+K E+ + + +++
Sbjct: 196 VEGEADEISEDRFLEAVLLAHDEIKRIVAMQHELRELAGKEKWEFTPPEENTELKQQIEE 255
Query: 302 -LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE----SLQVLPKAVDTVR 356
+ + + AVF + K +R A D++ QDV E + E +++ + + D +
Sbjct: 256 YIGDRLVSAVF---NPDKEQRLAATDELKQDVIAHFTEAPEGEEPVATVREVSEIFDGLV 312
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
K ++R+ I+ R DGR+ DE+R I+ E+G LP HGS++F+RG TQ L VTLG +E
Sbjct: 313 KGLVRRTILERSERPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLGTTSE 372
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q L+ L +KR++ HY+FPPF + EV + G +RR++GHG LAE++LLAVLP E+ F
Sbjct: 373 EQLLDGLGIEESKRYLHHYNFPPFSVGEVRRLRGPSRRDIGHGALAERSLLAVLPDEDVF 432
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+++S+GSTSMA+VCG S+ALMDAG+P++ VAGV++GL++ DP TG
Sbjct: 433 PYTMRVVSEIVSSNGSTSMASVCGSSLALMDAGVPIRAPVAGVAMGLIT--DPETGR--- 487
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
Y+ILTDI G+ED LGDMDFK+AGT G+T IQ+DIK GI +I+ E LE A +GRL IL
Sbjct: 488 YQILTDIQGIEDALGDMDFKVAGTAEGITGIQMDIKVMGITPEIMREALEQARRGRLYIL 547
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
D M ++ PR + +PR+ ++ D + +IGP G + R I+E TG +I + DGT
Sbjct: 548 DKMNAVLAQPRPEMSPYAPRIYRIQIRPDQIGEVIGPGGKVIRGIQEATGAKIDIEDDGT 607
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A N K ++ ++ + + EVG I+ G V ++ G FVE G+ G LH+SE
Sbjct: 608 VFISAVNEESARKAVDTIERMT-KVPEVGDIFFGRVKTIIPSGCFVEILPGKDGFLHISE 666
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L V+ V DVV VGQ+L++ G G I LS KA+
Sbjct: 667 LEPYRVNSVEDVVQVGQELNVVVTGIRPDGKINLSRKAL 705
>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
Length = 692
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 433/702 (61%), Gaps = 13/702 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
+ ++E + G + + LETG++AR A+GAV++ + ET VL T + +DF PLTV
Sbjct: 1 MSIVRKEVDFGGQRLYLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +REG P E+E L R+IDRP+RPLFP GF +EVQV+A+VLS D
Sbjct: 61 NYQEKAYAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI A SAAL +S IP+ GPIG R+G + G F++NP+ L+ S L+LV A
Sbjct: 121 QENDPDIPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
TR+ LM++ +A+E+ E + + + H + LA +AGK ++ +
Sbjct: 181 TRQAVLMVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPA 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
E ++ A A + + K R + LD+I + + E++ V+ V
Sbjct: 241 LQEAITQAALAPLREAYG--LVEKQARSKRLDEIRSSLLEQFGGSAGEQA-DVVRGVVKK 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ +++R R++ R+DGR VRPI E G +P HGS+LF+RG+TQ L TLG
Sbjct: 298 LETQIVRGRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G RFMLHY+FPPF E G RRE+GHG LA++A+ AVLP E+
Sbjct: 358 GDEQIVDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSES 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPY++R+ SE++ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ + GE
Sbjct: 418 EFPYSLRIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKD-----GE- 471
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE AH GRL
Sbjct: 472 -RYAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLH 530
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M ++ R+Q +PR+ +++ D +R +IGP G + R + EETG I + D
Sbjct: 531 ILSKMNAVLAQGRSQLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDD 590
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+T+ + N E +++ + ++EVG IY G V + ++GAFV G+ GLLH+
Sbjct: 591 GTVTIASVNGEAGEAARRRIELLTA-DVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHI 649
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
S++S E V+ V D V GQ + ++ + D +G IKLS+K ++
Sbjct: 650 SQISTERVNDVHDYVKEGQSVRVKVLEVDRQGKIKLSMKDIA 691
>gi|407972913|ref|ZP_11153826.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor indicus
C115]
gi|407431684|gb|EKF44355.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor indicus
C115]
Length = 718
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/704 (42%), Positives = 442/704 (62%), Gaps = 24/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ET VL+TV S+K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLVLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGFDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL D + D
Sbjct: 66 KTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVDGYKNDTQVIITVLQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ A SAAL LS +P+ GPIG R+G I G++I+NP +DE+ + L+LV A T E
Sbjct: 126 PDIVSMVAASAALTLSGVPFMGPIGAARVGYIGGEYILNPHVDEMEETKLDLVVAGTGEA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE---QT 295
LM++ +A+++ E + + H ++ I+LAE A K+ +++ + +SE +
Sbjct: 186 VLMVESEAQQLPEDVMLGAVMFGHKNFQPVIDAIIKLAEVAAKEPRDFSAADLSELEGEM 245
Query: 296 LEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKA 351
L+ V N L +A+ TD K +R +A+D VK E +EE S + +
Sbjct: 246 LKVVENDLRDAY---KITD----KQQRYDAVDAAKAKVKATFLPEGEEETKWSTEQVNTV 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ L TL
Sbjct: 299 FKSLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGVLPRTHGSALFTRGETQALVVATL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 359 GTGEDEQFIDSLTGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E +
Sbjct: 419 ASDQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEE--- 475
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ LE A G
Sbjct: 476 ----RFAVLSDILGDEDHLGDMDFKVAGTDEGITSLQMDIKIDGITEEIMKIALEQAKGG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + ++ R + +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 532 RLHILGEMSKALAESRGELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + N +E + + I E EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKIASSNAKEIEAARKWIHSITA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLASERVAKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVV 694
>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
Length = 690
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/695 (41%), Positives = 435/695 (62%), Gaps = 15/695 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEKQ 120
++G R +T+E GKIA+ ANGAV++ +T V+ VT +K + V DF PLTVD++EK
Sbjct: 1 MDLGGRTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGV-DFFPLTVDFEEKM 59
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP +++REG P E+ +L R+IDRPIRP+FP G++++VQ++A+ +S D PD
Sbjct: 60 YAVGKIPGGFIKREGRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPD 119
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+ A S AL +SDIP+ GPI +R+G I G+FI+NPT+++ +S LNL A T++ L
Sbjct: 120 MPAMIGASCALSISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQLNLAVAGTKDAIL 179
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A E+SE+ + + H + +E Q ++ + GK+K E E+ + ++
Sbjct: 180 MVEAGANEVSEETMLDAIWFGHGVIKQLVEFQEKIVAEIGKEKMEVPFYAPPEEMVAEIE 239
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
++ D + K ER E + K+ ++ + E+ + + V + K+++
Sbjct: 240 EYGAQKLKDALMDAN--KLEREENVAKVKAEIAEVFLEKYPDNAKDV-AYITQKLVKKIV 296
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ I + +R DGRQLDEVRP+ CE G L HGSSLF+RG TQ+L + L EAQ L
Sbjct: 297 RRTISVDKIRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQIL 356
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L TKR++ HY+FPP+ + E RRE+GHG LAE+AL V+P E DFPY +
Sbjct: 357 DGLGAEETKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALRPVIPSEEDFPYAI 416
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SEV+ S+GS+SM +VC +++LMDAG+P++ VAGV++GLV + GE + IL
Sbjct: 417 RLVSEVLESNGSSSMGSVCASTLSLMDAGVPIKAPVAGVAMGLVKD-----GEY--FTIL 469
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI GLED LGDMDFK+AGT G+TAIQ+DIK GI DI + L A +GR I+ M
Sbjct: 470 TDIQGLEDALGDMDFKVAGTEKGITAIQMDIKIDGINKDIFTQALAQAKRGREFIMGKMM 529
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
IS PR + + +P++ T+ D D + ++IGP G + +KI +ETG +I + D G + +
Sbjct: 530 ECISEPRKELSQYAPKITTIHVDPDKIAKVIGPGGKMIKKIVDETGAKIDIDDTGRVFIA 589
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A N K +E ++ I E EVG +Y G VT + +GAFVE G++GL+H+S+LS E
Sbjct: 590 AVNTEAANKAIEMIEGITA-EAEVGNVYTGKVTRLMNFGAFVEILPGKEGLVHISQLSTE 648
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVVSVG ++ ++ D +G I LS KAV
Sbjct: 649 HVDKVEDVVSVGDEIVVKVTEIDNKGRINLSRKAV 683
>gi|414164446|ref|ZP_11420693.1| polyribonucleotide nucleotidyltransferase [Afipia felis ATCC 53690]
gi|410882226|gb|EKS30066.1| polyribonucleotide nucleotidyltransferase [Afipia felis ATCC 53690]
Length = 714
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 435/705 (61%), Gaps = 17/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ T E + G R + LETGK+AR A+GAV+ ET V++TV S+K DFLPLT
Sbjct: 1 MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E+E LV R+IDRPIRPLF G+ + QV+ + LS
Sbjct: 61 VNYQEKTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL LS +P+ GP+G R+ + +FI+NPT+DE++ + L+LV A
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMADTQLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E+ + + H ++ I LAEKA K+ +E + I
Sbjct: 181 GTADAVLMVESEAKELPEEVMLGAVMFGHKHFQPVIKAIIDLAEKAAKEPRE--IETIDN 238
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA- 351
+++ + + EA + + P K +R A+ + + V E E L A
Sbjct: 239 SEIDRDMRAVGEAELRKAYAIPV--KQDRYAAVGAVKKKVMDHFFPEGQEPKFDKLRVAG 296
Query: 352 -VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ V+R I+ GVR+DGR + VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 297 VFKELEADVVRNNILDTGVRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA +A+ VL
Sbjct: 357 LGTGEDEQFIDALSGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVL 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 417 PAHHEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG--- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A
Sbjct: 474 ----SRFAVLSDILGDEDHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKD 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M + ++A R + ++PR+ L+ D +R +IG G + R+I E+TG +I+
Sbjct: 530 GRMHILGEMAKALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKIIREIVEKTGAKIN 589
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + N + ++ + I E EVG IY G + V E+GAFV F G + G
Sbjct: 590 IEDDGTVKVASANGESIRAAIKWIKSITS-EPEVGQIYDGTIVKVMEFGAFVNFFGPKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ V + SDVV G ++ ++ +G D RG ++LS+KAV
Sbjct: 649 LVHISQLAPNRVQKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAV 693
>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 733
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/729 (41%), Positives = 445/729 (61%), Gaps = 33/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + + E + G R + LETG AR A+ AV+ +T VL+TV ++ SV+ DF P
Sbjct: 1 MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGAR--SVKPGIDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQE+ +A G IP Y +REG P E+E L R+IDRPIRPLF GF +E QV+ +VL
Sbjct: 59 LTVNYQERTYAAGKIPGGYFKREGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DPDI+ A SAAL LS +P+ GPIG R+G + G+ ++NP +DE+ S L+LV
Sbjct: 119 SHDLENDPDILGMVAASAALTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSALDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T + +M++ +A+E+ E + + H ++ I LAEKA K+ + K+
Sbjct: 179 VAGTADAVMMVESEAKELPEAQMLEAVVFGHKHMQPVIQAIITLAEKAAKEPWDIKIPDK 238
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-----DEESLQ 346
++ E V LAE ++ F S E+G+ D + + KKA+ E D
Sbjct: 239 AKYAGE-VKKLAEKTLKQAF-----STKEKGKRQDLVAE-AKKAISEGISIPADDPNEKV 291
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+L A + ++R ++ +R+DGR L VRPI E LP HGS+LF+RG+TQ L
Sbjct: 292 LLSDAFKALEMDIMRGDVLKTKMRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQAL 351
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G +RF+LHY+FPP+ + EVG+ RRE+GHG LA +A+
Sbjct: 352 VVATLGTGEDEQFIDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAI 411
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP + DFPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E
Sbjct: 412 HPMLPSQEDFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKE 471
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D ++ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK GI +I+ L+
Sbjct: 472 GD-------EFVVLSDILGDEDHLGDMDFKVAGTANGVTSLQMDIKITGITEEIMRIALD 524
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
AH GR+ IL M + ++ R + +PR+ T+K D +R +IG G++ R+I E+G
Sbjct: 525 QAHDGRIHILGEMAKSLTGAREELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESG 584
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I + DGT+ + + NR +EK L ++ I E EVG IYKG V V E+GAFV F G
Sbjct: 585 AKIDIEDDGTVKIASANRESIEKALARIRGITS-EPEVGQIYKGKVVKVMEFGAFVNFFG 643
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS-------PRP 758
+ GL+H+S+L+ V VV GQ++ ++ +G D RG +LS+K V PR
Sbjct: 644 AKDGLVHISQLAPGRPESVGAVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEIPRA 703
Query: 759 EADVKGVVE 767
E + + V E
Sbjct: 704 EGEPEEVFE 712
>gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
hamburgensis X14]
gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis
X14]
Length = 748
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 446/743 (60%), Gaps = 25/743 (3%)
Query: 30 CSGRLGFAPCEPAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGM 89
SG L C P P K+ E + G R + LETGKIAR A+GAVV
Sbjct: 4 ASGNLAHGFCVWRPCFCEPQKDNNKMFNKHSVEIDWGGRPLKLETGKIARQADGAVVATY 63
Query: 90 DETKVLSTVTSSKG--DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRI 147
ET VL+TV ++K + V DFLPLTVDYQEK +A G IP Y +REG P E+E LV R+
Sbjct: 64 GETVVLATVVAAKTPREGV-DFLPLTVDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRL 122
Query: 148 IDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRI 207
IDRP+RPLF G+ +E QV+ +VLS D + DPD++A A SAAL LS P+ GPIG R+
Sbjct: 123 IDRPVRPLFADGWRNETQVIVTVLSHDMENDPDVLAMVAASAALTLSGAPFRGPIGAARV 182
Query: 208 GRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVK 267
G + ++++NPT+DE+ + L LV A T + LM++ +A+E+SE + + H
Sbjct: 183 GFMNDEYVLNPTLDEMVDTQLELVVAGTADAVLMVESEAKELSEDIMLGAVMFGHRHFQP 242
Query: 268 YLEPQIRLAEKAGKQKKEYKLSMISEQTLEK-VSNLAEAHIEAVFTDPSYS---KFERGE 323
+ I LAEKA K+ +E +S + LEK + L E + P+Y+ K +R
Sbjct: 243 VINAIIELAEKAAKEPRE--VSQADDSALEKEMLGLIEGELR-----PAYAIADKQQRQN 295
Query: 324 ALDKIGQDVKKALEEECDEESLQVLPKAV--DTVRKRVIRKRIIAEGVRVDGRQLDEVRP 381
A+ V E E L A + +++R I+ G R+DGR VR
Sbjct: 296 AVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKHLEAKIVRWNILDTGKRIDGRDAKTVRN 355
Query: 382 IYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFC 441
I E G LP HGS+LF+RG+TQ + TLG + Q +++L G + F+LHY+FPP+
Sbjct: 356 ILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKETFLLHYNFPPYS 415
Query: 442 INEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGG 501
+ E G+ RRE+GHG LA +A+ VLPP ++FPYT+RV SE+ S+GS+SMA+VCG
Sbjct: 416 VGETGRLGSTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITESNGSSSMASVCGA 475
Query: 502 SMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTR 561
S++LMDAG+PL+ AG+++GL+ E Y +L+DILG EDHLGDMDFK+AGT
Sbjct: 476 SLSLMDAGVPLKRPTAGIAMGLILEG-------SRYAVLSDILGDEDHLGDMDFKVAGTE 528
Query: 562 IGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLK 621
+G++++Q+DIK AGI +I+ L A +GR+ IL M + ++ R + +PR+ T K
Sbjct: 529 VGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKALTNARAELGEYAPRIETFK 588
Query: 622 YDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGRE 680
D +R +IG G + R+I E+TG +I++ DGT+ V + + M+ ++ + I +
Sbjct: 589 IPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVASNDGEAMKAAIKWIKS-IASD 647
Query: 681 IEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740
EVG IY+G V V E+GAFV F G + GL+H+S+L+ V + SD+V G ++ ++ +G
Sbjct: 648 PEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRVQKSSDIVKEGDKVKVKLLG 707
Query: 741 QDVRGNIKLSLKAVSPRPEADVK 763
D RG +LS+KAV + D++
Sbjct: 708 FDDRGKTRLSMKAVDQQTGEDLE 730
>gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
V453]
gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
V453]
Length = 701
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/697 (42%), Positives = 436/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + ETG++A+ AN AV++ ET VL TVT+S DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ G F+VNP + + SD+ LV + T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDIYLVVSGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E+ + + H E K + L GK+K KL ++E +V +
Sbjct: 186 VEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNEAVNREVRD 245
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
A A +EAV + K R +A+D I ++ EE+ E E L+ + + + + K
Sbjct: 246 FAAARLVEAVRIE---EKHARQDAIDAINEEAYTVFEEKYIETPELLKDVKEVLHDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR L E+RPI C++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
ILTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ E L+ A +GR+ IL
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPEGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PRT + +P++ T++ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MAEAIQQPRTSLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N + +K L ++ I+ RE+ VG IY G V ++++GAFVE + GL+H+S+LS
Sbjct: 596 IASANDEMNKKALSIIEGIV-REVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++++ D +G I LS KAV
Sbjct: 655 TERVAKVEDVVAIGDVITVKVTEIDQQGRINLSRKAV 691
>gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter
desulfuricans SSM1]
gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter
desulfuricans SSM1]
Length = 700
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/692 (43%), Positives = 438/692 (63%), Gaps = 16/692 (2%)
Query: 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQGV 125
S I ETG A+ ANG++ + + VL T +SK S DF PLTV+Y EK +A G
Sbjct: 16 SEPIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLTVNYIEKFYAVGK 75
Query: 126 IPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAAN 185
IP +++REG P ++E L+ R+IDRPIRPLFP GF +E Q++A+V+SSD DI+A N
Sbjct: 76 IPGGFIKREGKPSDKETLISRLIDRPIRPLFPEGFRNETQIIATVVSSDQVNSTDILALN 135
Query: 186 ATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQ 245
A SAALM+SDIP+ GPIG +R+G+I G++++NP+ ++N+V A T + +M++
Sbjct: 136 AASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFDDLEMNIVVAGTEDSIVMVEAG 195
Query: 246 AREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN-LAE 304
+ SE+D+ L H K +E Q R+ ++ GK+K EY +SE L K+ + + +
Sbjct: 196 MKNCSEEDVVNALEFGHEAIKKLVEVQKRMRDEIGKEKFEYMDFSVSEDDLNKLYDEIGD 255
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD---EESLQVLPKAVDTVRKRVIR 361
EAV K E+ EA+DK+ ++ + L+EE EE+ + V K+V R
Sbjct: 256 KLKEAVLIP---GKLEKYEAIDKVKEEYFEKLKEELGDEFEENKGYYNELYQEVEKKVFR 312
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ G RVDGR E+RPI E LP HGS+LF+RG+TQ L T TLG ++Q L+
Sbjct: 313 DITLNSGKRVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTKFDSQLLD 372
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L G KRFMLHY+FPPF + E+G RRE+GHG LAE+AL ++LP E++FPYT+R
Sbjct: 373 DLEGETYKRFMLHYNFPPFSVGEIGFLRAPGRREIGHGFLAERALASMLPGEDEFPYTIR 432
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE++ S+GS+SMATVCGGS+ALMDAG+P+++ VAG+++GL+ E D +Y IL+
Sbjct: 433 VVSEILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGD------DNYVILS 486
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI+G+EDHLGDMDFK+ GT G+TA+Q+DIK G+ +I+ + L A +GRL IL M+
Sbjct: 487 DIMGIEDHLGDMDFKVTGTETGITALQMDIKIKGLKREILEKALAQAKEGRLFILQKMKA 546
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
++ PR + +PR +K + + + LIGP G + I ++TG +I + +G L +
Sbjct: 547 VLAKPREEVSPKAPRFVKVKINPEKVGLLIGPAGKTIKSIIDKTGVKIDILEEGELHIFG 606
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ ++ +E ++ + +E+ VG IY V V +YGAFVE G +GLLHVS+ S E
Sbjct: 607 NNKEAIDSAIEMIE-AVTQELTVGKIYNAKVKRVVDYGAFVELFPGVEGLLHVSQFSKER 665
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ + D V VG L + +G+D +G IKLS K
Sbjct: 666 IENIRDHVKVGDSLDVEYLGKDDQGRIKLSRK 697
>gi|398803098|ref|ZP_10562208.1| polyribonucleotide nucleotidyltransferase [Polaromonas sp. CF318]
gi|398097306|gb|EJL87616.1| polyribonucleotide nucleotidyltransferase [Polaromonas sp. CF318]
Length = 705
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 288/709 (40%), Positives = 444/709 (62%), Gaps = 12/709 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLT 113
+ + F+ G +T+ETG+IAR ++GAVV+ MD T VL+TV + S +DF PLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEIARQSSGAVVVDMDGTVVLATVVAKSDAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EVQV+ VLS
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + + DI A A+SAAL +S IP+ GPIG R+ I GQ+++NP +L S ++LV A
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYIDGQYVLNPGKTQLKDSKMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK +++ +E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPVWDWQAPAKNE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV+ LA A ++A + +K R +A + DV AL+ + E + +
Sbjct: 243 PLIAKVNELAGAKLQAAYQ--IRAKQARTQACRVVTSDVMAALKADGVEFDSVAVEGMLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R +I+A R+DGR VR I + LP HGS+LF+RG+TQ L TLG
Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RFMLHY+ PPF E G+ RRE+GHG LA++AL+AVLP +
Sbjct: 361 ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPTK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + + + +PRL +K + + +R +IG GA+ R + EETG +I++
Sbjct: 534 HILGKMQEAMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ + + + ++ ++ I E+E+G +Y+G VT + ++GA + G+ GLLH
Sbjct: 594 DGTITIASNDSAKADEAKRRIAEITA-EVEIGKVYEGPVTKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+S+++HE V +V+D +S GQ + ++ + D +G +KLS+KA+ RP D
Sbjct: 653 ISQIAHERVEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLDRPAQD 701
>gi|408788370|ref|ZP_11200091.1| polynucleotide phosphorylase/polyadenylase [Rhizobium lupini
HPC(L)]
gi|408485959|gb|EKJ94292.1| polynucleotide phosphorylase/polyadenylase [Rhizobium lupini
HPC(L)]
Length = 715
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/699 (42%), Positives = 436/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + +PD
Sbjct: 68 YAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 ILSMIATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S E ++
Sbjct: 188 MVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEMLA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK--- 357
LAEA + + K R A+D + VK E E + P+ + V K
Sbjct: 248 -LAEAELRDAYK--ITEKAARYAAVDAVKAKVKAHFLPE--EGEAKYTPEEIGAVFKHLQ 302
Query: 358 -RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 303 AKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP F
Sbjct: 363 EQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 423 PYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT
Sbjct: 536 GEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H+S+
Sbjct: 596 VKIASSSGKEIEAARKWIHSIVA-EPEVGAIYEGTVVKTADFGAFVNFFGARDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 655 LASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|440224993|ref|YP_007332084.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici CIAT
899]
gi|440036504|gb|AGB69538.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici CIAT
899]
Length = 732
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/708 (41%), Positives = 440/708 (62%), Gaps = 17/708 (2%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFL 110
G + + E E R + LETGKIAR A+GAVV ET VL+TV S+K +DF
Sbjct: 18 GQDMFDIHTVEIEWAGRPLKLETGKIARQADGAVVATYGETVVLATVVSAKAPKPGQDFF 77
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V
Sbjct: 78 PLTVNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTV 137
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+ D + +PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+L
Sbjct: 138 IQHDLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDL 197
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T++ LM++ +A+E+ E + + H ++ I+LAE A K+ ++++
Sbjct: 198 VVAGTQDAVLMVESEAKELPEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQPED 257
Query: 291 ISEQTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQV 347
SE LEK + LAEA + + K +R A+D + VK EE + + +
Sbjct: 258 YSE--LEKEMLGLAEAELRNAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEE 313
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 314 VGAIFKHLQAKIVRWNILDTSSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIV 373
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+
Sbjct: 374 VATLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIR 433
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 434 PMLPSAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEG 493
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L
Sbjct: 494 D-------RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQ 546
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG
Sbjct: 547 AQGGRAHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGA 606
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G
Sbjct: 607 KINIEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGA 665
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 666 RDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 713
>gi|424897717|ref|ZP_18321291.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2297]
gi|393181944|gb|EJC81983.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2297]
Length = 712
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 439/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E+ + + H L+ I+LAE A K+ ++++ SE
Sbjct: 181 GTYDAVLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKA 351
E + + EA + + K +R A+D + VK E E + +V+
Sbjct: 241 LEAEMLKHF-EAELREGYK--ITQKADRYAAVDAVKAKVKAHFFPEGVEPKYTAEVIGAV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TVEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RAHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
Length = 697
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/694 (42%), Positives = 446/694 (64%), Gaps = 24/694 (3%)
Query: 65 IGSRLITLETGKIARFANGAVVLGMDETKVLSTVT--SSKGDSVRDFLPLTVDYQEKQFA 122
IG R + LETG++A+ ANGAV + + VL+TV SS +S+ DF+PL V+Y EK +A
Sbjct: 9 IGGRDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESL-DFVPLQVEYNEKYYA 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG PK++E+LV R+IDRP+RPLF F E+Q++ + +S+D PDI+
Sbjct: 68 AGKIPGGFLKREGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQINPPDIV 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A NA SAA+ +SDIP+ GP+G +RI + + I+NP+ D++S L +V + T++ M+
Sbjct: 128 AMNAASAAVCVSDIPFAGPVGAVRIANVDDELIINPSFDQISRCTLEIVVSGTKDGITMV 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A+E+ E+ L + + LA P K E Q +L AGK+K ++ E+ LE+ +
Sbjct: 188 EGGAKEVPEELLLSAIALAEPAIKKLCEAQEQLMALAGKEKLPL---VVEEKKLERRQEM 244
Query: 303 AEAHI----EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+ EA F K RG A+ + + +A ++ +E++ ++ ++ + +
Sbjct: 245 WDFAYPKMEEACFVK---GKMNRGAAVKAVKTETAEAFADDLNEDNERLFNALMEEMETK 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
V+R I+ +GVR DGR L+ VRPI CE G L HGS+LF+RG+TQ L TLG + Q
Sbjct: 302 VVRSSILDKGVRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQ 361
Query: 419 RLESLVGPPT-KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
++++ G T + FMLHY+FPPF + E G R+ RRE+GHG LA +AL AVLP + DFP
Sbjct: 362 MMDNIDGDKTYENFMLHYNFPPFSVGETG-RLTTGRREIGHGHLAHRALEAVLPQKKDFP 420
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE++ S+GS+SMATVCGG+++L+ AG+P+++ VAG+++GLVSE D +
Sbjct: 421 YTIRVVSEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAA------ 474
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDILG EDHLGDMDFK+AGT G+TA Q+DIK AGI D++ LE A KGR+ IL
Sbjct: 475 -VLTDILGEEDHLGDMDFKVAGTEDGITAFQMDIKIAGISSDLMKRALEQAKKGRMHILG 533
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M + P + +P++ +LK D D + +IGP G + I E++G +++ D GT+
Sbjct: 534 IMNATLKEPVSDVSDFAPKILSLKVDVDKIGAIIGPGGKTIKAIAEQSGSEVNIDDNGTV 593
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
T+ K + EK E + I+ E EVG IY+G V + ++GAFVE G++GL H+S+L
Sbjct: 594 TIFGKTKEKAEKAREFIKAIV-EEPEVGKIYEGTVKRIMDFGAFVEILPGKEGLCHISKL 652
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLS 750
S + V+ VSDV++V Q++ ++ I D +G + LS
Sbjct: 653 SRKRVNSVSDVLAVDQKIPVKLIEIDRQGRLNLS 686
>gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella
frigidimarina NCIMB 400]
gi|122300513|sp|Q086G7.1|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina
NCIMB 400]
Length = 698
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 288/702 (41%), Positives = 444/702 (63%), Gaps = 14/702 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I ++++NPT+D+L+ S LNLV A T+ LM
Sbjct: 128 VSMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAGTKAAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+ + + H + ++ +AGK ++ + + + K+
Sbjct: 188 VESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQALVAKIKE 247
Query: 302 LAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + EA + ++ + + + A + D + L + ++ K V+
Sbjct: 248 LAEAGMTEAYQIEVKQDRYVQVGIVKAAAKAALVAENPDVDTREVDNL---LGSLEKSVV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RII+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TLG +AQ++
Sbjct: 305 RGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY++
Sbjct: 365 DSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEFPYSI 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M+
Sbjct: 478 SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMD 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ I R ++PR+ T+K + + +R +IG GA+ R + EETG I + D GT+ +
Sbjct: 538 QAIGTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 598 SSNGEATKEAIRRIEEITA-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
V+ VSD + + Q+++++ + D +G ++LS+K + A+
Sbjct: 657 RVANVSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQAKETAE 698
>gi|340783203|ref|YP_004749810.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
SM-1]
gi|340557354|gb|AEK59108.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
SM-1]
Length = 692
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 433/702 (61%), Gaps = 13/702 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
+ ++E + G + + LETG++AR A+GAV++ + ET VL T + +DF PLTV
Sbjct: 1 MSIVRKEVDFGGQRLCLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +REG P E+E L R+IDRP+RPLFP GF +EVQV+A+VLS D
Sbjct: 61 NYQEKAYAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI A SAAL +S IP+ GPIG R+G + G F++NP+ L+ S L+LV A
Sbjct: 121 QENDPDIPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
TR+ LM++ +A+E+ E + + + H + LA +AGK ++ +
Sbjct: 181 TRQAVLMVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPA 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
E ++ A A + + K R + LD+I + + E++ V+ V
Sbjct: 241 LQEAITQAALAPLREAYG--LVEKQARSKRLDEIRSSLLEQFGGSAGEQA-DVVRGVVKK 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ +++R R++ R+DGR VRPI E G +P HGS+LF+RG+TQ L TLG
Sbjct: 298 LETQIVRGRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G RFMLHY+FPPF E G RRE+GHG LA++A+ AVLP E+
Sbjct: 358 GDEQIVDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSES 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPY++R+ SE++ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ + GE
Sbjct: 418 EFPYSLRIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKD-----GE- 471
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE AH GRL
Sbjct: 472 -RYAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLH 530
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M ++ R+Q +PR+ +++ D +R +IGP G + R + EETG I + D
Sbjct: 531 ILSKMNAVLAQGRSQLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDD 590
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+T+ + N E +++ + ++EVG IY G V + ++GAFV G+ GLLH+
Sbjct: 591 GTVTIASVNGEAGEAARRRIELLTA-DVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHI 649
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
S++S E V+ V D V GQ + ++ + D +G IKLS+K ++
Sbjct: 650 SQISTERVNDVHDYVKEGQSVRVKVLEVDRQGKIKLSMKDIA 691
>gi|387127175|ref|YP_006295780.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM1]
gi|386274237|gb|AFI84135.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM1]
Length = 697
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 431/702 (61%), Gaps = 12/702 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
+ + K+ + G +++LETGKIAR A G+++ + ET VL TV K + +DF PLTV
Sbjct: 1 MNSVKKTVQFGEHILSLETGKIARQAGGSIIASLGETSVLVTVVGKKNVNPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ +A G IP + +REG P E+E L R+IDRP+RPLFP GF +EVQV+A+V++ D
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFINEVQVIATVMALD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI A SAAL +S IP+ GP+G R+G + G +I+NP+ +L+ S L+LV A
Sbjct: 121 PEIDPDIPAMIGASAALAISGIPFNGPLGAARVGYVDGNYILNPSKKQLAASSLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A E+ E+ + + H + ++ L + K E+ ++
Sbjct: 181 TESAVLMVESEASELPEEVMLGSVMYGHQQIQTAIKLIDELKAETAKTAWEWTAPEKDDR 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
V + A I+ + K +R + L +I Q AL E E S +
Sbjct: 241 LYNAVKDQAFEGIKNAYA--ISDKMQRQDQLAEIRQAAIAALVSEDGEWSEDDVKGVFGK 298
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++R RIIA R+DGR VRP++ E+ LP +HGS+LF+RG+TQ + TLGA
Sbjct: 299 LEKELVRGRIIAGEPRIDGRDTKTVRPVFVETTVLPRVHGSALFTRGETQAIVVATLGAE 358
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ ++++ G RFMLHY+FPPFC+ E G RRE+GHG LA++ + AV+P
Sbjct: 359 RDAQMIDAVEGEYRDRFMLHYNFPPFCVGETGFVGTPKRREIGHGKLAKRGIQAVMPSAE 418
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL+ E D
Sbjct: 419 EFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEPDA----- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A GRL
Sbjct: 474 --YAVLTDILGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRLH 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL+ M IS R + +PR+ T+K D +R +IG GA R I EETG I + D
Sbjct: 532 ILEKMNAVISTHRQEMSEFAPRIITVKIHADKIRDVIGKGGATIRAITEETGATIDIQDD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ + + + + + L +++ I E+EVG IY+G V + ++GAFV G+ GL+H+
Sbjct: 592 GTVMIFSSDFNAGQDALHRIEQITA-EVEVGKIYQGRVAKLMDFGAFVTILPGKDGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
S++S E V VSD +S G + ++ + D +G I+LS+KAV+
Sbjct: 651 SQISDERVENVSDKLSEGDMIDVKVLEVDRQGRIRLSMKAVN 692
>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
gi|254782718|sp|B9MEL0.1|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
[Acidovorax ebreus TPSY]
Length = 727
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/709 (40%), Positives = 440/709 (62%), Gaps = 12/709 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+ G + + +ETG+IAR A+GAV++ +D+T VL+TV SK +DF PLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GFY+EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A A SAAL +S IP+ GPIG R+G + G++++NP S L+LV A
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV+ LAE + A + SK R +AL + V ++L+ E E + +
Sbjct: 243 TFIAKVTALAEDKLRAAYQ--IRSKQARTQALREASASVLESLKGEGVEFDAVKVEALLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG
Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL+A LP +
Sbjct: 361 ERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 421 DEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + +T+ +P+L T+K + + +R +IG GA R + +ETG +I++
Sbjct: 534 HILGKMQEAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ A + ++ +++ I E+EVG +Y+G VT + ++GA + G+ GLLH
Sbjct: 594 DGTITIAATEAAKADEAKRRIEEITA-EVEVGKVYEGPVTKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+S+++HE V +V D + GQ + ++ + D +G +KLS+KA++ RP D
Sbjct: 653 ISQIAHERVEKVGDYLQEGQVVKVKVLETDDKGRVKLSMKALADRPAGD 701
>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
C-125]
gi|81786500|sp|Q9KA83.1|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
Length = 704
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 446/705 (63%), Gaps = 20/705 (2%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E + EF I R +T+ETG++A+ ANGAV++ +T VLST T+SK F PLT
Sbjct: 1 MEQERHEFSIDWAGRKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLFP GF +EVQV++ V+S
Sbjct: 61 VNYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D ++ A +S AL +SDIP+ GPI + +GRI GQF++NPT D+L SD++LV A
Sbjct: 121 DQDCSSEMAAMVGSSLALSISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDIHLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E + + H E + +E Q ++A + GK K + L +
Sbjct: 181 GTKDAINMVEAGAEEVPEDVMLEAIMFGHNEIKRLIEFQEKIAAEVGKSKTDVVLKQVDP 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD---EESLQVLPK 350
++V AE ++ P K R +A++ + V + E+ D E ++L K
Sbjct: 241 MLEQEVRVKAEEDLKQAVQVP--EKHARQDAIEAVMDKVLETYEDNEDVPLSEVNEILHK 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
V K +R+ I E +R DGR++DE+RP+ + G LP HGS LF+RG TQ L T
Sbjct: 299 IV----KEEVRRLITVEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICT 354
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LGA + Q L+ L +KRFM HY+FP F + E G G RRE+GHG L E+AL V+
Sbjct: 355 LGALGDVQILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVI 414
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E DFPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV + +
Sbjct: 415 PSEQDFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHV 474
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDI G+ED LGDMDFK+AGTR GVTA+Q+DIK +GI I+ + LE A K
Sbjct: 475 S-------VLTDIQGMEDALGDMDFKVAGTRKGVTALQMDIKISGIDRAILEQALEQARK 527
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ ILD+M IS R++ +P++ T+ + D +R +IGP G + KI E+TG +I
Sbjct: 528 GRMIILDNMLEAISESRSELSPYAPKILTMTINPDKIRDVIGPSGKMINKIIEDTGVKID 587
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + ++ K E ++ I+ RE+EVG +Y G V ++++GAFVE G+ G
Sbjct: 588 IEQDGTIYISSADTNMNNKAREIIEDIV-REVEVGQMYLGTVKRIEKFGAFVELFKGKDG 646
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ E V++V DVV +G ++ ++ + D +G + LS KAV
Sbjct: 647 LVHISQLAEERVNKVEDVVKIGDEILVKVMEIDNQGRVNLSRKAV 691
>gi|422015365|ref|ZP_16361964.1| polynucleotide phosphorylase/polyadenylase [Providencia
burhodogranariea DSM 19968]
gi|414099530|gb|EKT61171.1| polynucleotide phosphorylase/polyadenylase [Providencia
burhodogranariea DSM 19968]
Length = 707
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 450/702 (64%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+L +F+ G +++ETG +AR A AV++ MD+T V T V K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMMARQATAAVMVNMDDTAVFVTAVAKKKVKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E LV R+IDRP+RPLFP F +E+Q++A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLVARLIDRPLRPLFPESFLNEIQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFIDDQYVLNPTADELKSSRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE+ + + H + ++ L ++AGK+K +++ +++
Sbjct: 181 GTESAVLMVESEAELLSEEQMLGAVVFGHDQQQVVIKEINELVKEAGKEKWDWQPEPVNQ 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+KV+ LA++ + + TD K ER +D I +V A+ E + +
Sbjct: 241 ALSDKVAELAQSRMGDAYRITD----KQERYAQVDLIKDEVTAAIVAEDENVDTSEISDL 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ ++ K+V+R R+I R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LASLEKQVVRTRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 417 NHADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGN--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
D+ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----DFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITSEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+ PR + +PR+ T++ + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGTMEQAINGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + ++ + +++ I E+EVG +Y G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGLKAKEAIRRIEEITA-EVEVGRVYPGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 735
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/697 (42%), Positives = 436/697 (62%), Gaps = 14/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
+ EFE+ R LETGK+AR A AV + ET VL+TVT+SK DF PLTV+Y+E+
Sbjct: 4 RHEFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEER 63
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E +L R+IDRPIRPLFP GF ++VQ++ VLS D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAP 123
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
+I A TSA+L +SDIP+ GPIG + +G + GQF++NPT+++ SDL+LV A T++
Sbjct: 124 EIAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAI 183
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A ++ E+ + + H + ++ + +I A+K G +K+E +L + +
Sbjct: 184 VMVEAGANQVPEEIVLEAILYGH-QVIQTICDEINAFAQKVGVKKREVELHKVDPELEAA 242
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V A + A +P K R EAL + +V + +E E+ + + + T+ K
Sbjct: 243 VRAYATDKVSAAVRNP--DKLAREEALANLNAEVLEHFKETFPEKEADI-AEVMHTILKE 299
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I+ EG+R DGR+LDE+RPI CE G LP HGS+LF+RG TQ L TLG+ + Q
Sbjct: 300 RVREAILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQ 359
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ L + R+M HY+FPPF + E +RR++GHG L E+AL V+P +FPY
Sbjct: 360 LLDGLELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPY 419
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
+RV SE++ S+GSTS A++CG +MALMDAG+P++ VAG+++GLV E D
Sbjct: 420 AIRVVSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGD-------QVA 472
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI G+EDHLGDMDFK+AGT GVTA+Q+DIK +GI I+ L+ A +GR+ IL
Sbjct: 473 ILSDIQGIEDHLGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSK 532
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M IS PR + +PR+ T+K D +R +IGP G + KI EETG +I + DG +
Sbjct: 533 MMEAISEPRADLSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVY 592
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + E V+ I+ R++EVG Y G VT V+++GAFVE G++GL+H+S+L
Sbjct: 593 IHSTDAEQANRAREMVENIV-RDVEVGATYTGKVTRVEKFGAFVEILPGKEGLVHISQLD 651
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V++V DV VG L+++ D +G I LS K V
Sbjct: 652 LNRVAKVEDVCQVGDTLTVKVTEIDNQGRINLSRKEV 688
>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
gi|254782705|sp|C1EP29.1|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
Length = 712
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|123734390|sp|Q4FNM6.1|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
ubique HTCC1062]
Length = 690
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/707 (40%), Positives = 451/707 (63%), Gaps = 30/707 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ + +K+E E+ + I+LETGK+AR A+GA++ ET +L+TV +K + D+ PL+
Sbjct: 1 MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLFP+ F +EVQ++ +V+S
Sbjct: 61 VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D PDI+A A+SAAL +S +P+ GP+G R+G + G++I+NP+ EL S L+LV A
Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ + ++E+ + ++ H V P I + E+ K+ ++ E
Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFV----PVIEMIEELAKECRK------PE 230
Query: 294 QTLEKVSNLAEAH--IEAVFTD---PSYSKFERGEALDKIGQDVKKALEEECDEESLQ-- 346
T+EK +L+E +E FT+ +++ ++ + ++I + KA + D+E+
Sbjct: 231 WTVEK-KDLSEVKKKLEENFTEDLTKAFATIDKQDRSNQISEISDKAKQLFADDENYSDF 289
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ + + K+++R I+ R+DGR L +VR I CE G LP HGS+LF+RG+TQ +
Sbjct: 290 NVNDELKNLEKKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAI 349
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + QRLESL G +RFMLHY+FPPF + E G R+G RREVGHG LA +A+
Sbjct: 350 VVTTLGTSDDEQRLESLDGQHRERFMLHYNFPPFSVGETG-RIGTGRREVGHGKLAWRAI 408
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+ LPP+ +FPYT R+ SE+ S+GS+SMA+VCG S+ALMDAG+P++E VAG+++GL+ E
Sbjct: 409 NSSLPPKEEFPYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKE 468
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D D+ +L+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ + L+
Sbjct: 469 GD-------DFSVLSDILGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALK 521
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A +GR+ IL M + +S R ++P++ + D + +IG GA R+I E++G
Sbjct: 522 QAKEGRIHILGEMNKALSESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSG 581
Query: 647 GRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
++ V+D G +TV A + ++ + I + E+ IY G V + E+GAFV F G
Sbjct: 582 AKLDVNDEGVVTVAAPDEESRNIAMQMIKDITAK-AELNKIYSGKVMKIMEFGAFVNFLG 640
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
Q GL+H+SEL+ + V +V+D+V G ++ ++ IG D RG +KLS+K
Sbjct: 641 KQDGLVHISELATKRVEKVTDIVKEGDEVKVKVIGFD-RGKVKLSMK 686
>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
Length = 712
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 444/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL ++ + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVNADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E EE D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A1055]
Length = 712
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 701
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 433/699 (61%), Gaps = 12/699 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
+E+ + E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTV
Sbjct: 1 MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D
Sbjct: 61 DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PD++A +S AL +SDIP+ GP G + +G + + ++NPT E +S L+LV +
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+++ +MI+ A+E+SE + + A E K +E + + GK K EY+ ++ E
Sbjct: 181 TKDRVMMIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPED 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+KV +A + P K ER + LD++ ++V KA E E EE+L ++ A+ +
Sbjct: 241 IKQKVREIAYDKVYQYVQIPD--KIERDKKLDELKEEVFKAFEGET-EETLLLVDDALYS 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG
Sbjct: 298 LEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
E Q L+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E+
Sbjct: 358 GEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSED 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S
Sbjct: 418 EFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGS---- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+
Sbjct: 474 --FILLTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLK 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M+ I PR++ +P++ D + +R +IGP G + KI ET +I + D
Sbjct: 532 ILDFMQTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+
Sbjct: 592 GRIFVAAPDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+L + V +VV VG + ++ IG D G + LS K
Sbjct: 651 SQLDERRLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|384187864|ref|YP_005573760.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|410676180|ref|YP_006928551.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|423385310|ref|ZP_17362566.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|423528332|ref|ZP_17504777.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|452200244|ref|YP_007480325.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|401635366|gb|EJS53121.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|402451995|gb|EJV83814.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|409175309|gb|AFV19614.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|452105637|gb|AGG02577.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 712
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|424909032|ref|ZP_18332409.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392845063|gb|EJA97585.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 715
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/699 (42%), Positives = 436/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + +PD
Sbjct: 68 YAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 ILSMIATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S E ++
Sbjct: 188 MVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEMLA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK--- 357
LAEA + + K R A+D + VK E E + P+ + V K
Sbjct: 248 -LAEAELRDAYK--ITEKAARYAAVDAVKAKVKAHFLPE--EGEAKYTPEEIGAVFKHLQ 302
Query: 358 -RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 303 AKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP F
Sbjct: 363 EQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 423 PYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT
Sbjct: 536 GEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H+S+
Sbjct: 596 VKIASSSGKEIEAARKWIHSIVA-EPEVGAIYEGTVVKTADFGAFVNFFGARDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 655 LASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/701 (43%), Positives = 437/701 (62%), Gaps = 17/701 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQ 120
+ E+ R +TLETG+IA+ A+GA+ +T VL+T V S DFLPLTVDYQEK
Sbjct: 6 DIELAGRRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQEKT 65
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P ERE+L R+IDRP+RPLFP G+Y E QV+ASVLS+D D
Sbjct: 66 YAAGKIPGGYFKREGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASVLSADKTGVSD 125
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++ A SAAL +S IP+ GPI ++IGR+ GQF+VNP ++ L SDL+LV A T + +
Sbjct: 126 VIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSDLHLVVAGTADAVM 185
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A E+ E + + LAH E K + L + GK K+ I E+V
Sbjct: 186 MVEAGANELPEATMLEAIELAHSEIKKIVAKIEELRKLVGKVKRVVVQEAIDAALTEQVR 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKI-GQDVKKALEEECDEE-SLQVLPKAVDTVRKR 358
L I P+ S R E LD++ + V K +E + + ++++ ++
Sbjct: 246 ALVAGPIREAILIPNKSA--RQERLDQVLAETVAKLKSDEPNRDRHVKIIFHGLEYTE-- 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R I+ + VR DGR ++RPI CE G LP HGS++F+RG+TQ L VTLG + Q
Sbjct: 302 -VRNMILEKRVRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQ 360
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
R+++L G + FMLHY+FPPF + E RREVGHG LAE+AL +++P ++ FPY
Sbjct: 361 RIDALEGEYMRTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPY 420
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
TVR+ SE++ S+GS+SMATVCGG++AL+DAG+P++E VAG+++GL+ E D
Sbjct: 421 TVRIVSEILESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGD-------QVL 473
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILGLEDHLGDMDFK+ GT+ GVTA+Q+DIK GI ++ E L A GRL IL
Sbjct: 474 VLSDILGLEDHLGDMDFKVTGTKNGVTALQMDIKIGGITAGLMREALAQAKAGRLHILGC 533
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M + ++ PRT+ +PR+ +K D +R +IGP G + R I ETG +I+V D G +T
Sbjct: 534 MAQALTEPRTKLSAFAPRIFPMKIKQDKIRDVIGPGGKMIRSIIAETGVKINVEDTGDVT 593
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + +K ++ + + E+EVG IY G V + ++GAFVE G GL+H+S+L+
Sbjct: 594 IASSDEASAQKAIDMIKRLT-EEVEVGKIYLGTVRKIMDFGAFVEVLPGTDGLVHISQLA 652
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
H V V+D VS G Q+ ++ + D +G I+LS K P P
Sbjct: 653 HHRVKAVTDEVSEGDQVMVKVLEIDKQGKIRLSRKEAMPAP 693
>gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
ATCC 49957]
gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
ATCC 49957]
Length = 735
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/708 (41%), Positives = 433/708 (61%), Gaps = 19/708 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVD 115
F+++ G + +TLETGK+AR A+GAV+ + +T VL TV ++ SV+ DF PLTV+
Sbjct: 6 FRKDIAWGGKTLTLETGKVARQADGAVMARLGDTIVLCTVVGAR--SVKPGQDFFPLTVN 63
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
YQEK FA G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+VLS D
Sbjct: 64 YQEKAFAAGKIPGGFFKREGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLSHDM 123
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
+ PDI+A SAAL LS IP+ GP+G R+ I GQ+++NPT++++ + L+LV A T
Sbjct: 124 ENSPDIVALVGCSAALTLSGIPFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLDLVVAGT 183
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
E LM++ +A E++E+ + + H +E I LAEKA K+ + E
Sbjct: 184 AEGVLMVESEASELTEEVMLGAVTFGHQSFQPVIEGIIELAEKAAKEP----WDLPEEDP 239
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
A + +Y + ++ K+G+ KKA+ + E+ + + +
Sbjct: 240 AVAALKAKLAELGRAPIAEAYKETQKLLRQTKVGE-AKKAILAQLSEDEAAMAKGLLKEL 298
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
V+R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 299 EADVVRNAILDTGLRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGTGQ 358
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++ L G + FMLHY+FPP+ +NE G+ RRE+GHG LA +A+ +LP +
Sbjct: 359 DEQIIDQLAGEYRENFMLHYNFPPYSVNETGRMGSPGRREIGHGKLAWRAIHPLLPEKEK 418
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMATVCG S++LMDAG+PL+ AG+++GL+ E K
Sbjct: 419 FPYTMRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPCAGIAMGLIKEE-------K 471
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+ LE A GRL I
Sbjct: 472 GFAVLSDILGDEDHLGDMDFKVAGTEQGITALQMDIKITSITPEIMKIALEQAKGGRLHI 531
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M + ++ RT N+P++ + D +R +IG G + R I E TG +I + DG
Sbjct: 532 LGEMAKGLTGARTDVAANAPKITVINVPKDKIREVIGTGGKVIRDIVETTGTKIDIEDDG 591
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + + + ++++ I E E+G IY G V E+GAFV F G + GL+H+S
Sbjct: 592 TIKIASTSPEATQAAIDRIRGITA-EPEIGVIYNGTVVKTAEFGAFVNFLGAKDGLVHIS 650
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
EL++E V++ +D+V G ++ ++ +G D RG +KLS++ V AD+
Sbjct: 651 ELANERVAKTTDIVKQGDKVKVKVLGFDDRGKVKLSMRVVDQATGADI 698
>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 712
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|423711015|ref|ZP_17685335.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
Sb944nv]
gi|395414929|gb|EJF81364.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
Sb944nv]
Length = 733
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/721 (41%), Positives = 444/721 (61%), Gaps = 28/721 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKA----LEEECDEES 344
+ E L+ +AE I + TD K ER A+D + +V +EE+C +
Sbjct: 241 LEEAMLK----MAEEDIRKAYQITD----KQERYAAIDALKTEVINKFMPEMEEDCKFSA 292
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
Q+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 293 DQI-ATVFKQLQAKIVRWNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQ 351
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
+ TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 352 AIVVATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWR 411
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 412 AIHPMLPNKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLI 471
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E GE + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+
Sbjct: 472 KE-----GE--RFAILSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIA 524
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
LE A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+
Sbjct: 525 LEQAKGGRIHILNEMAKALTSARDELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQ 584
Query: 645 TGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
TG +I++ D GT+ + + + +E + I+ E EVG IY+G V E+GAFV F
Sbjct: 585 TGAKINIEDNGTIKIASTDAKTIEAAKRWIHSIVD-EPEVGVIYQGTVVKTAEFGAFVNF 643
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
G + GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V + ++
Sbjct: 644 FGSRDGLVHISQLTSERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEIT 703
Query: 764 G 764
G
Sbjct: 704 G 704
>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase [Bacillus cereus E33L]
gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
str. Al Hakam]
gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|227813285|ref|YP_002813294.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CDC 684]
gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CNEVA-9066]
gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Western North America USA6153]
gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Kruger B]
gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Vollum]
gi|386737630|ref|YP_006210811.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|421507348|ref|ZP_15954268.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|421639561|ref|ZP_16080152.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
gi|423550444|ref|ZP_17526771.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|81395117|sp|Q6HF08.1|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81686592|sp|Q636L9.1|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470934|sp|A0RHH8.1|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782704|sp|C3L7C0.1|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
str. Al Hakam]
gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
CDC 684]
gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|384387482|gb|AFH85143.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|401190060|gb|EJQ97110.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|401822482|gb|EJT21632.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|403393226|gb|EJY90471.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
Length = 712
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|424879467|ref|ZP_18303099.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392515830|gb|EIW40562.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 712
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 438/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ ATSAAL LS IP+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDVLSMVATSAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H L+ I+LAE A K+ ++++ + S
Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + LAE + + K +R A+D + VK EE + + +
Sbjct: 241 LETEML-GLAEGELREAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEARYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TPEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RVHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G +Y+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQVYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
bescii DSM 6725]
gi|257096680|sp|B9MR54.1|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
bescii DSM 6725]
Length = 701
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 433/699 (61%), Gaps = 12/699 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
+E+ + E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTV
Sbjct: 1 MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D
Sbjct: 61 DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PD++A +S AL +SDIP+ GP G + +G + + ++NPT E +S L+LV +
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+++ +MI+ A+E+SE + + A E K +E + + GK K EY+ ++ E
Sbjct: 181 TKDRVMMIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPED 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+KV +A + P K ER + LD++ ++V KA E E EE+L ++ A+ +
Sbjct: 241 IKQKVREIAYDKVYQYVQIPD--KIERDKKLDELKEEVFKAFEGET-EETLLLVDDALYS 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG
Sbjct: 298 LEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
E Q L+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E+
Sbjct: 358 GEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSED 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S
Sbjct: 418 EFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGS---- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+
Sbjct: 474 --FILLTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLK 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M+ I PR++ +P++ D + +R +IGP G + KI ET +I + D
Sbjct: 532 ILDFMQTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+
Sbjct: 592 GRIFVAAPDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+L + V +VV VG + ++ IG D G + LS K
Sbjct: 651 SQLDERRLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|386360362|ref|YP_006058607.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
gi|383509389|gb|AFH38821.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
Length = 713
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/729 (42%), Positives = 452/729 (62%), Gaps = 31/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
V + + E + R + LETGK A+ A+G+V++ +T VL+T +S+ DFLPLTV
Sbjct: 7 VPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTV 66
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+++E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQ++ +VLS+D
Sbjct: 67 EFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSAD 126
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K PDI+ A SAALMLSDIPW GPI +R+G I G F++NPT+ EL S L+LV A
Sbjct: 127 QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAG 186
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISE 293
++E LM++ +A E+ E+ L L AH E LE Q +A + K K + + E
Sbjct: 187 SKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPE 246
Query: 294 QTLEKVSNLA-EAHIEAVFTDPSYSKFERGEALDK-----IGQDVKKALEEECDEESLQV 347
+ E + LA E + V + SK ER AL + I + + K + DE +
Sbjct: 247 EEKEALYRLALERGLSQVLQ--TASKGERSRALSEFAERLIAEVLPKGEDGTPDEGKKPL 304
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
A D V +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL
Sbjct: 305 YESAFDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TVTLG + Q L+ L T++F++HY+FPPF EV + G++RREVGHG LA++AL
Sbjct: 365 TVTLGTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALK 424
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AV+P E DFPYT+RV +V+ S+GS+SMATVC G +ALMDAG+P++ VAGV++GLV E
Sbjct: 425 AVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEE 484
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L
Sbjct: 485 NRAV-------ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A + RL+ILD ME + APR + +PR+ +LK + + +IGP G R + EE G
Sbjct: 538 AREARLKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGV 596
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+ + DGT+ + + + + + ++++ + RE +VG IY+G VT + +GAF+ G
Sbjct: 597 EVDIEEDGTVRIYSSDLNAALEAKKRIEDLT-REAKVGEIYEGTVTRITPFGAFISLFPG 655
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVV 766
+GLLH+S+++ V RV D + VG + ++ D RG I L RPE +
Sbjct: 656 TEGLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------L 703
Query: 767 EGSVPVNKQ 775
EG +P ++
Sbjct: 704 EGKIPPRRR 712
>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB8]
gi|81364132|sp|Q5SJ75.1|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
Length = 713
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/729 (42%), Positives = 452/729 (62%), Gaps = 31/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
V + + E + R + LETGK A+ A+G+V++ +T VL+T +S+ DFLPLTV
Sbjct: 7 VPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTV 66
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+++E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQ++ +VLS+D
Sbjct: 67 EFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSAD 126
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K PDI+ A SAALMLSDIPW GPI +R+G I G F++NPT+ EL S L+LV A
Sbjct: 127 QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAG 186
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISE 293
++E LM++ +A E+ E+ L L AH E LE Q +A + K K + + E
Sbjct: 187 SKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPE 246
Query: 294 QTLEKVSNLA-EAHIEAVFTDPSYSKFERGEALDK-----IGQDVKKALEEECDEESLQV 347
+ E + LA E + V + SK ER AL + I + + K + DE +
Sbjct: 247 EEKEALYRLALERGLSQVLQ--TASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPL 304
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
A D V +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL
Sbjct: 305 YESAFDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TVTLG + Q L+ L T++F++HY+FPPF EV + G++RREVGHG LA++AL
Sbjct: 365 TVTLGTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALK 424
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AV+P E DFPYT+RV +V+ S+GS+SMATVC G +ALMDAG+P++ VAGV++GLV E
Sbjct: 425 AVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEE 484
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L
Sbjct: 485 NRAV-------ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A + RL+ILD ME + APR + +PR+ +LK + + +IGP G R + EE G
Sbjct: 538 AREARLKILDLMEAVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGV 596
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+ + DGT+ + + + + ++++ + RE +VG IY+G VT + +GAF+ G
Sbjct: 597 EVDIEEDGTVRIYSSDLQAALEAKKRIEDLT-REAKVGEIYEGTVTRITPFGAFISLFPG 655
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVV 766
+GLLH+S+++ V+RV D + VG + ++ D RG I L RPE +
Sbjct: 656 TEGLLHISQIAPGRVARVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------L 703
Query: 767 EGSVPVNKQ 775
EG +P ++
Sbjct: 704 EGKIPPRRR 712
>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
Length = 712
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGQGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|384431325|ref|YP_005640685.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
gi|333966793|gb|AEG33558.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
Length = 713
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/729 (42%), Positives = 451/729 (61%), Gaps = 31/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
V + + E + R + LETGK A+ A+G+V++ +T VL+T +S+ DFLPLTV
Sbjct: 7 VPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTV 66
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+++E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQ++ +VLS+D
Sbjct: 67 EFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSAD 126
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K PDI+ A SAALMLSDIPW GPI +R+G I G F++NPT+ EL S L+LV A
Sbjct: 127 QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAG 186
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISE 293
++E LM++ +A E+ E+ L L AH E LE Q +A + K K + + E
Sbjct: 187 SKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPE 246
Query: 294 QTLEKVSNLA-EAHIEAVFTDPSYSKFERGEALDK-----IGQDVKKALEEECDEESLQV 347
+ E + LA E + V + SK ER AL + I + + K + DE +
Sbjct: 247 EEKEALYRLALERGLSQVLQ--TASKGERSRALSEFAERLIAEALPKGEDGTPDEGKKPL 304
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
A D V +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL
Sbjct: 305 YESAFDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TVTLG + Q L+ L T++F++HY+FPPF EV + G++RREVGHG LA++AL
Sbjct: 365 TVTLGTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALK 424
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AV+P E DFPYT+RV +V+ S+GS+SMATVC G +ALMDAG+P++ VAGV++GLV E
Sbjct: 425 AVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEE 484
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L
Sbjct: 485 NRAV-------ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A + RL+ILD ME + APR + +PR+ +LK + + +IGP G R + EE G
Sbjct: 538 AREARLKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGV 596
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+ + DGT+ + + + + ++++ + RE +VG IY+G VT + +GAF+ G
Sbjct: 597 EVDIEEDGTVRIYSSDLQAALEAKKRIEDLT-REAKVGEIYEGTVTRITPFGAFISLFPG 655
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVV 766
+GLLH+S+++ V RV D + VG + ++ D RG I L RPE +
Sbjct: 656 TEGLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------L 703
Query: 767 EGSVPVNKQ 775
EG +P ++
Sbjct: 704 EGKIPPRRR 712
>gi|417858448|ref|ZP_12503505.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens F2]
gi|338824452|gb|EGP58419.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens F2]
Length = 709
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 435/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 2 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 61
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + +PD
Sbjct: 62 YAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 121
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ ATSAAL LS IP+ GPIG R+G I G++++NP +DE+ S L+LV A T + L
Sbjct: 122 VLSMVATSAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESTLDLVVAGTSDAVL 181
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S E ++
Sbjct: 182 MVESEAKELNEDIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEMLA 241
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK--- 357
LAEA + + K R A+D + VK E E P+ + V K
Sbjct: 242 -LAEAELRDAYK--ITEKAARYTAVDAVKAKVKAHFLPEEGEAKYS--PEEIGAVFKHLQ 296
Query: 358 -RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 297 AKIVRWNVLDTKSRIDGRDLSTVRPIISEVGLLPRTHGSALFTRGETQAIVVATLGTGED 356
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP F
Sbjct: 357 EQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQF 416
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE
Sbjct: 417 PYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE--R 469
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR IL
Sbjct: 470 FAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHIL 529
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT
Sbjct: 530 GEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGT 589
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H+S+
Sbjct: 590 VKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQ 648
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 649 LASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 687
>gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase [Granulibacter bethesdensis CGDNIH1]
gi|122326039|sp|Q0BPK3.1|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter
bethesdensis CGDNIH1]
Length = 720
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/716 (41%), Positives = 438/716 (61%), Gaps = 24/716 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ F++E ++G R + LETGKIAR A+GAV+ + +T VL T +K + +DF PLT
Sbjct: 1 MFNYFRKELDLGGRTLVLETGKIARQADGAVLARLGDTIVLCTAVGAKSAKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E E LV R+IDRPIRPLFP GFY+EVQV+A+VLS
Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A SAAL LS IP+ GP+ R+G + G F++NPT+++ + S L+LV A
Sbjct: 121 DMENDPDIVALIGCSAALTLSGIPFFGPVAASRVGLVNGAFVLNPTLEQRAESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A E+SE + A + H ++ I LAE A + + E
Sbjct: 181 GTAEGVLMVESEAEELSEDQMLAAVEFGHKGFQPVIDAIIALAEHAARDP-----WTLPE 235
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEAL--DKIGQDVKKALEE----ECDEESLQV 347
Q E V+ L + EA T + E+ + L +KI K+ +E EES +
Sbjct: 236 QNPEHVA-LKQRLNEAGRTLLGNAYQEKVKQLRQEKISAAKKQIIETLGIGGTPEES--I 292
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ + ++R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ LC
Sbjct: 293 AKSMLKDLEADIVRNAILDTGIRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALC 352
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q +++L G FMLHY+FPP+ + E G+ RRE+GHG LA +A+
Sbjct: 353 VATLGTGQDEQVVDALTGEYRSHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVH 412
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
VLP ++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+
Sbjct: 413 PVLPAKDAFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIK-- 470
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
E + + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK I +I+ L+
Sbjct: 471 -----EDRAFAVLSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKITSITTEIMRIALQQ 525
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL M + I+ R +PR+ + + +R +IG G + R+I E +G
Sbjct: 526 ARDGRMHILGEMAKAITGARGSVAATAPRITVINVPKEKIREVIGTGGKVIREIVEFSGA 585
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I + DGT+ + + + +K ++++ I+ E EVG IY G V ++GAFV F G
Sbjct: 586 KIDIEDDGTIKIASTSEESTQKAIDRIQGIVA-EPEVGKIYNGKVVKTADFGAFVNFLGS 644
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+ GL+H+SEL V++ SDV++VG + ++ +G D RG +KLS++ V D+
Sbjct: 645 RDGLVHISELQQGRVNKTSDVINVGDVVKVKVLGFDDRGKVKLSMRLVDQTTGEDI 700
>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae]
Length = 712
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 288/699 (41%), Positives = 438/699 (62%), Gaps = 19/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG+IAR A+GAVV+ +++T +L+TV + K +DF PLTVDY EK +
Sbjct: 9 FQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLFP G+ +EVQV+ VLS + + DPDI
Sbjct: 69 AAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL L+ IP+ GP+G R+G I GQ+++NPT +L S L+LV A T LM
Sbjct: 129 PAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVAGTETAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++SE+ + + H ++ +E L GK + ++ +E + +VS
Sbjct: 189 VESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNEALIARVSQ 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT------V 355
LAE + + + K R E L + V +AL E + V A + +
Sbjct: 249 LAEGPLREAYQ--TKDKQARTEKLKAVTAQVNEALVAEAAANN-GVAADAAEVGSILFDL 305
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 306 EAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTAR 365
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++++ G + F+ HY+FPPF + E G+ +G RRE+GHG LA++ +LAV+P
Sbjct: 366 DGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLEA 425
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+R+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ HVAG+++GL+ E +
Sbjct: 426 FPYTIRLVSEITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGN------- 478
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A +GR I
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHI 538
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M+ + A R + +PRL T+K + + +R +IG GA+ R + EETG +I +SD G
Sbjct: 539 LGKMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEG 598
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+T+ + + S ++ +++ + +EVG IY+G V + ++GA V+ G+ GLLH+S
Sbjct: 599 VVTIASVDASAGQEAKRRIEELTA-SVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHIS 657
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
++++E V+ V+D + GQQ+ ++ + D RG +KLS+KA
Sbjct: 658 QIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKA 696
>gi|395791475|ref|ZP_10470933.1| polyribonucleotide nucleotidyltransferase [Bartonella alsatica IBS
382]
gi|395408838|gb|EJF75448.1| polyribonucleotide nucleotidyltransferase [Bartonella alsatica IBS
382]
Length = 733
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/718 (41%), Positives = 438/718 (61%), Gaps = 22/718 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ T VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGGTIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIASARVGYCNGQYILNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ L+
Sbjct: 181 GTENAVLMVESEAQELPENIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLTD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQV 347
+ + LE +AE I +T K ER A+D + +V EE E S
Sbjct: 241 LEKAMLE----MAEQDIRKAYT--IADKQERYAAIDALKTEVINKFIPETEESSEFSADQ 294
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 295 IATVFKQLQAKIVRWNILDTKKRIDGRDLSTVRPIESEVGILPRTHGSALFTRGETQAIV 354
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 355 VATLGTGEDEQYIDSLTGTYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIH 414
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 415 PMLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE- 473
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
GE + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 ----GE--RFAILSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQ 527
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 528 AKSGRIHILNEMSKALTSARAELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGA 587
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ + + + +E + I+ E E+G IY+G V E+GAFV F G
Sbjct: 588 KINIEDDGTIKIASADAKTIEAAKHWIHSIVD-EPEIGAIYQGTVVKTAEFGAFVNFFGS 646
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+ GL+H+S+L+ E V + +D+V G ++ ++ +G D RG I+LS+K V + ++ G
Sbjct: 647 RDGLVHISQLASERVIKTTDIVKEGDKVWVKLMGFDERGKIRLSMKIVDQQTGEEITG 704
>gi|395780941|ref|ZP_10461385.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
085-0475]
gi|395416816|gb|EJF83178.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
085-0475]
Length = 733
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/721 (41%), Positives = 444/721 (61%), Gaps = 28/721 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIPDDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKA----LEEECDEES 344
+ E L+ +AE I + TD K ER A+D + +V +EE+C +
Sbjct: 241 LEEAMLK----MAEEDIRKAYQITD----KQERYAAIDALKTEVINKFMPEMEEDCKFSA 292
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
Q+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 293 DQI-ATVFKQLQAKIVRWNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQ 351
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
+ TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 352 AIVVATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWR 411
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 412 AIHPMLPNKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLI 471
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E GE + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+
Sbjct: 472 KE-----GE--RFAILSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIA 524
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
LE A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+
Sbjct: 525 LEQAKGGRIHILNEMAKALTSARDELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQ 584
Query: 645 TGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
TG +I++ D GT+ + + + +E + I+ E EVG IY+G V E+GAFV F
Sbjct: 585 TGAKINIEDNGTIKIASTDAKTIEAAKRWIHSIVD-EPEVGVIYQGTVVKTAEFGAFVNF 643
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
G + GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V + ++
Sbjct: 644 FGSRDGLVHISQLTSERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEIT 703
Query: 764 G 764
G
Sbjct: 704 G 704
>gi|218898959|ref|YP_002447370.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus G9842]
gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558867|ref|YP_006601591.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
gi|423561787|ref|ZP_17538063.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|226702616|sp|B7IUG5.1|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401202044|gb|EJR08909.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|401787519|gb|AFQ13558.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
Length = 712
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|347761168|ref|YP_004868729.1| polyribonucleotide nucleotidyltransferase [Gluconacetobacter
xylinus NBRC 3288]
gi|347580138|dbj|BAK84359.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Gluconacetobacter xylinus NBRC 3288]
Length = 712
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/719 (42%), Positives = 440/719 (61%), Gaps = 33/719 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ F++E E G R + LETGK+AR A+GAVV+ +T VL T +K SV+ DF P
Sbjct: 1 MFNYFRKEIEWGGRPLVLETGKVARQADGAVVVTYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK +A G IP + +REG P E E+L R+IDRPIRPLFP F +EVQV+A+VL
Sbjct: 59 LTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP ++A SAAL LS IP+ GP+G R+G GQ+++NPT+ +L S+L+LV
Sbjct: 119 SHDMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGQYVLNPTISQLKESELDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T E LM++ +A E+SE + + H ++ I LAE A K +
Sbjct: 179 VAGTSEGVLMVESEAVELSEDVMLGAVTFGHEAFQPVIDLIIDLAESAAKAPWDLAEPTA 238
Query: 292 SEQTL-EKVSNLAEAHIEAVFTDPS----YSKFE--RGEALDKIGQDVKKALEEECDEES 344
E L +KV A I + + + Y K R L KIG E D ++
Sbjct: 239 EEIKLRKKVDKAGRALIAEAYKERAKQVRYKKVAAAREAILAKIG---------EADADA 289
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
+ + K ++ V+R ++ G R+DGR L+ +RPI E G LP HGS+LF+RG+TQ
Sbjct: 290 AKPMIKDLEA---DVVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQ 346
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TLG + Q +++L G FMLHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 347 ALVVATLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWR 406
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP ++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+
Sbjct: 407 AIHPLLPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLI 466
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E D D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+
Sbjct: 467 KEED-------DFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIA 519
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L A +GRL IL M + ++ RT ++P++ T+ + +R +IG G + R+I E
Sbjct: 520 LGQARQGRLHILGEMAKALTEGRTDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEY 579
Query: 645 TGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
+G +I ++ DGT+ + A + EK +E++ I+ E EVG IY G V ++GAFV F
Sbjct: 580 SGAKIDINDDGTIMIAASSDEQAEKAIERIRGIVA-EPEVGHIYNGKVVKTADFGAFVNF 638
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ VS+ +DVV G ++ ++ +G D RG +KLS++ V + AD+
Sbjct: 639 LGPRDGLVHISELADGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQKTGADI 697
>gi|395782581|ref|ZP_10462967.1| polyribonucleotide nucleotidyltransferase [Bartonella
rattimassiliensis 15908]
gi|395417318|gb|EJF83657.1| polyribonucleotide nucleotidyltransferase [Bartonella
rattimassiliensis 15908]
Length = 731
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/706 (41%), Positives = 438/706 (62%), Gaps = 18/706 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E LV R+IDRPIRPLF G+ ++ Q++ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQIIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H L+ I+LAE A K +++ +S
Sbjct: 181 GTESAVLMVESEAQELPEDVMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFIPEDLS- 239
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLP 349
LEK + +AE I +T K ER A+D + ++ E +E+ S+ +
Sbjct: 240 -NLEKAMQEMAEEDIRRAYT--ITDKQERYAAIDALKTEIINKFMPETEEDCKFSVDQIA 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 297 TVFKQLQAKIVRGSILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA +A+ +
Sbjct: 357 TLGTSEDEQYIDALTGLYKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPM 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 417 LPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE--- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A
Sbjct: 474 --GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR+ IL+ M + +++ R++ SPR+ + D +R +IG G + R+I E+TG +I
Sbjct: 530 SGRIHILNEMAKALTSARSELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + I+ E EVG IY+G V E+GAF+ F G +
Sbjct: 590 NIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTAEFGAFINFFGSRD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG ++LS+K V
Sbjct: 649 GLVHISQLATERVTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 712
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 290/704 (41%), Positives = 439/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H L+ I+LAE A K+ ++++ + S
Sbjct: 181 GTYDAVLMVESEAKELNEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + LAE + + K +R A+D + VK EE + + + +
Sbjct: 241 LETEML-GLAEGELREAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TPEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RVHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G +Y+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQVYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|423470021|ref|ZP_17446765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
gi|402437273|gb|EJV69297.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
Length = 717
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/694 (42%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
gi|75424073|sp|Q9ZAE1.1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81405907|sp|Q72JJ8.1|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
Length = 713
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/729 (42%), Positives = 452/729 (62%), Gaps = 31/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
V + + E + R + LETGK A+ A+G+V++ +T VL+T +S+ DFLPLTV
Sbjct: 7 VPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTV 66
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+++E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQ++ +VLS+D
Sbjct: 67 EFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSAD 126
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K PDI+ A SAALMLSDIPW GPI +R+G I G F++NPT+ EL S L+LV A
Sbjct: 127 QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAG 186
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISE 293
++E LM++ +A E+ E+ L L AH E LE Q +A + K K + + E
Sbjct: 187 SKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPE 246
Query: 294 QTLEKVSNLA-EAHIEAVFTDPSYSKFERGEALDK-----IGQDVKKALEEECDEESLQV 347
+ E + LA E + V + SK ER AL + I + + K + DE +
Sbjct: 247 EEKEALYRLALERGLSQVLQ--TASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPL 304
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
A D V +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL
Sbjct: 305 YESAFDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TVTLG + Q L+ L T++F++HY+FPPF EV + G++RREVGHG LA++AL
Sbjct: 365 TVTLGTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALK 424
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AV+P E DFPYT+RV +V+ S+GS+SMATVC G +ALMDAG+P++ VAGV++GLV E
Sbjct: 425 AVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEE 484
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L
Sbjct: 485 NRAV-------ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A + RL+ILD ME + APR + +PR+ +LK + + +IGP G R + EE G
Sbjct: 538 AREARLKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGV 596
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+ + DGT+ + + + + + ++++ + RE +VG IY+G VT + +GAF+ G
Sbjct: 597 EVDIEEDGTVRIYSSDLNAALEAKKRIEDLT-REAKVGEIYEGTVTRITPFGAFISLFPG 655
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVV 766
+GLLH+S+++ V RV D + VG + ++ D RG I L RPE +
Sbjct: 656 TEGLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------L 703
Query: 767 EGSVPVNKQ 775
EG +P ++
Sbjct: 704 EGKIPPRRR 712
>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
fumaroxidans MPOB]
gi|187611325|sp|A0LHM4.1|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
fumaroxidans MPOB]
Length = 699
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/710 (42%), Positives = 442/710 (62%), Gaps = 32/710 (4%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
+ E+G R + E G+IAR A G+V++ +T VL + ++K D +R DF+PL VDYQE
Sbjct: 6 QVEVGGRPMVFEAGEIARQAGGSVLMRYGDTVVL--IAATKEDRIREGIDFVPLMVDYQE 63
Query: 119 KQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
+A G IP + RRE G P E+E L R+IDRPIRPLFP + +E QV+A+VLS D +
Sbjct: 64 MSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDMEN 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
+PD++A S AL +S +P+ GP+ +R+GRI G F +NP+ EL SDLN+V A +R+
Sbjct: 124 EPDVVALTGASTALHISPVPFQGPVAAVRVGRINGSFAINPSAKELLESDLNVVVAGSRD 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ A +SE DL + H + L+ Q L + K+ + +E ++
Sbjct: 184 AVVMVEGGADFVSEDDLVDAIDFGHKAILPILDAQDELQRRIAPVKEAPPEVVRNESLVQ 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV---LPKAVDT 354
V + A A + AV T P K R +D KKAL+E E + PK +D
Sbjct: 244 AVRDAAAAEMRAVMTTPE--KHPR--------RDRKKALKERIQAELVSDDPDRPKQIDN 293
Query: 355 V----RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ K V+R+ ++ EG R+DGR+ DE+RPI ++G LP HGS++F+RG+TQVL VT
Sbjct: 294 ILEDLEKEVVRRMMVEEGRRIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVT 353
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG+ ++ Q++E+L G K FMLHY+FP F + EV G RRE+GHG LAE+++ AVL
Sbjct: 354 LGSSSDEQKIEALAGETFKSFMLHYNFPAFSVGEVRPLRGPGRREIGHGALAERSVKAVL 413
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + +FPYT+RV SEV+ S+GS+SMATVCG S+ALMDAG+P+ E V G+++GLV E D
Sbjct: 414 PRDGEFPYTIRVVSEVLESNGSSSMATVCGSSLALMDAGVPITEPVGGIAMGLVKEGDKI 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+L+DILG EDHLGDMDFK+ G+ G+TAIQ+D+K AGI I+ LE A
Sbjct: 474 I-------VLSDILGDEDHLGDMDFKVTGSERGITAIQMDVKIAGIDRGIMQRALEQARA 526
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M+ +SAPR + +PR+ T+ + + +R +IGP G + R I ETG +I
Sbjct: 527 GRIFILGKMKEVLSAPRPELSPYAPRVITIMINPEKIRDVIGPGGKVIRSIVAETGAKID 586
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D G + +++ + + +K +E++ + +E EVG +Y + V ++GAF E +G
Sbjct: 587 IEDSGKVVIMSPDGAACDKAVERIRGLT-QEPEVGQLYMSRIVRVTDFGAFAEILPNIEG 645
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
L+H+S+L H V +V+DVV G ++ ++ I D G I+LS KA +PE
Sbjct: 646 LIHISQLEHRRVRKVTDVVQEGDEVLVKVIEIDKDGRIRLSRKAALEKPE 695
>gi|423558630|ref|ZP_17534932.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
gi|401191898|gb|EJQ98920.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
Length = 717
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/694 (42%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLA 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 701
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/699 (42%), Positives = 432/699 (61%), Gaps = 12/699 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
+E+ + E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTV
Sbjct: 1 MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D
Sbjct: 61 DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PD++A +S AL +SDIP+ GP G + +G + G+ ++NPT E +S L+LV +
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+++ +MI+ A+E+ E + + A E K +E + + GK K EY+ ++ ++
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPDE 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+KV +A + P K ER + LD++ ++V KA E E EE+L ++ A+
Sbjct: 241 IKQKVREIAYDKVYQYVQIPD--KIERDKKLDELKEEVFKAFEGET-EETLLLVDDALYN 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG
Sbjct: 298 LEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
E Q L+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E+
Sbjct: 358 GEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSED 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S
Sbjct: 418 EFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGS---- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+
Sbjct: 474 --FILLTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLK 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M+ I PR + +P++ D + +R +IGP G + KI ET +I + D
Sbjct: 532 ILDFMQTVIDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+
Sbjct: 592 GRIFVAAPDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+L + V +VV VG + ++ IG D G + LS K
Sbjct: 651 SQLDERRLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|423359157|ref|ZP_17336660.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD022]
gi|401085029|gb|EJP93275.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD022]
Length = 712
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEIGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase [Alcanivorax borkumensis SK2]
gi|123050749|sp|Q0VSR7.1|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis
SK2]
Length = 697
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/696 (42%), Positives = 434/696 (62%), Gaps = 14/696 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
++ + G +TLETG+IAR A AV++ + +T+VL TV K + ++F PLTV+YQEK
Sbjct: 7 KQIQFGRDTVTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLTVNYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E+E L R+IDRPIRPLFP GF +EVQV+A+V+SSD +DP
Sbjct: 67 TYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSSDKNRDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI A TSAAL +S IP+ GPIG R+G G +I+NP+ EL+ S L+LV A T
Sbjct: 127 DIAALIGTSAALSISGIPFSGPIGAARVGYKDGMYILNPSYSELAESALDLVVAGTEPAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+SE + + H E ++ A + G + ++K + +E +
Sbjct: 187 LMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNETLKAAI 246
Query: 300 SN-LAEAHIEAVFTDPSYSKFER-GEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
+ A A EA +++ + GE D + + + + ++ L + K
Sbjct: 247 KDKFAAALGEAYTITEKMARYAKVGELRDACVAEFATGEDGAPEADEVKDL---FGKIEK 303
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R+ +++ R+DGR LD VR I C+ G L HGS+LF+RG+TQ + T TLG +A
Sbjct: 304 SVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDA 363
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q +++L G FML Y+FPP+C+ E G RRE+GHG LA + + AV+P DFP
Sbjct: 364 QFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVVPSVQDFP 423
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE+ S+GS+SMA+VCG SMALMDAG+PL VAG+++GLV E D Y
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGR------Y 477
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + L A+ GRL IL
Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHILG 537
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M + I+ R++ N+P L TLK + D +R +IG GA R + EETG I + DG++
Sbjct: 538 EMNKAIAESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDGSV 597
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + R ++ + +V+ I E EVG IY+G VT V ++GAFV G +GLLH+S++
Sbjct: 598 KIYGETREKADEAVRRVEEITA-EAEVGAIYEGKVTRVVDFGAFVAIMPGTEGLLHISQI 656
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ E V +V+D V+ G+ + ++ + D RG IKLS+K
Sbjct: 657 AEERVEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMK 692
>gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
Length = 697
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/703 (42%), Positives = 436/703 (62%), Gaps = 28/703 (3%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
++ + G +TLETG+IAR A AV++ + +T+VL TV K D ++F PLTV+YQEK
Sbjct: 7 KQIQFGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADPSKNFFPLTVNYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E+E L R+IDRPIRPLFP GF +EVQV+A+V+SSD +DP
Sbjct: 67 TYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSSDKNRDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI A TSAAL +S IP+ GPIG R+G G +I+NP+ EL+ S L+LV A T
Sbjct: 127 DIAALIGTSAALSISGIPFNGPIGAARVGYKDGMYILNPSYSELAESALDLVVAGTEPAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+SE + + H E ++ A + G + ++K + +E +
Sbjct: 187 LMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNETLKAAI 246
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKAVDT-- 354
+ A + +Y+ E+ K+G+ L E C E + P+A +
Sbjct: 247 KDKFGAAL-----GEAYTITEKMARYAKVGE-----LREACVAEFATGEEGAPEAGEVKE 296
Query: 355 ----VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ K V+R+ +++ R+DGR LD VR I C+ G L HGS+LF+RG+TQ + T T
Sbjct: 297 LFGKIEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTAT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ +++L G FML Y+FPP+C+ E G RRE+GHG LA + + AV+
Sbjct: 357 LGGMRDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVV 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P DFPYTVRV SE+ S+GS+SMA+VCG SMALMDAG+PL VAG+++GLV E D
Sbjct: 417 PSVQDFPYTVRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGR 476
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + L A+
Sbjct: 477 ------FAVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANA 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + IS R++ N+P L TLK + D +R +IG GA R + +ETG I
Sbjct: 531 GRLHILGEMNKAISESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTDETGCTID 590
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DG++ + + R ++ + +V+ I E EVG IY+G VT V ++GAFV G +G
Sbjct: 591 IEDDGSVKIYGETREKADEAVRRVEEITA-EAEVGVIYEGKVTRVVDFGAFVAIMPGTEG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
LLH+S+++ E V +V+D V+ G+ + ++ + D RG IKLS+K
Sbjct: 650 LLHISQIAEERVEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMK 692
>gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|81355362|sp|Q5NQ32.1|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 748
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/697 (43%), Positives = 443/697 (63%), Gaps = 14/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
++E + G + +TLETG++AR A+GAV+ + ET VL VT++K +DF PLTV YQE
Sbjct: 6 RQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K A G IP + +RE ERE L+ R+IDRPIRPLFP GFY+E V+A V+S DG+ +
Sbjct: 66 KYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENE 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G G+FI+NPT+++L SDL+LV TR+
Sbjct: 126 PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVGATRDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ +A E+ E+ + + AH ++ I LAE+A K+ E +S K
Sbjct: 186 VMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWEL-VSYDDSALAAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V L + + + K ER +AL K + +A E E L++ K + +
Sbjct: 245 VEELCYDNFDKAYR--LTRKAERVDALSKAKAVLDEAFPEADPTEKLRI-QKLAKKLEAK 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ EG R+DGR L VRPI + G LP HGS+LF+RG+TQ L + TLG Q
Sbjct: 302 IVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++ L G +RFMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP + DFPY
Sbjct: 362 MIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV S++ S+GS+SMATVCGG +ALMDAG+PL V+G+++GL+ E D +
Sbjct: 422 TIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKD-------GFA 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI+G EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR IL
Sbjct: 475 ILSDIMGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M + + R++ +PR+ T+ D +R +IG G + R+I TG ++ + DGT+
Sbjct: 535 MSKALGEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVR 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + +E E ++ I+ E EVG IY G V ++ ++GAFV F GG+ GL+HVSE+
Sbjct: 595 LSSSDPANIEAAREWINGIV-EEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIK 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+E V++VSDV+S GQ++ ++ + D RG ++LS++ V
Sbjct: 654 NERVNKVSDVLSEGQEVKVKVLEIDNRGKVRLSMRVV 690
>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
naphthalenivorans CJ2]
gi|187610307|sp|A1VM56.1|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
Length = 703
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/706 (40%), Positives = 437/706 (61%), Gaps = 12/706 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLT 113
+ + F+ G +T+ETG++AR A GAV+L MD T VL+TV + S +DF PLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EVQV+ VLS
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + + DI A A+SAAL +S IP+ GPIG R+ I G++++NP +L S ++LV A
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK ++K E
Sbjct: 183 GTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV LAE + A + +K R A ++ K L+ E E + +
Sbjct: 243 VLIAKVVALAEEKLVAAYQ--IRNKQARTHATRQVTTWTKMGLKAEGVEFDGVAVEGMLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG
Sbjct: 301 DIEAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RFMLHY+ PPF E G+ RRE+GHG LA++AL+AVLP +
Sbjct: 361 ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARM 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + + +PRL +K + + +R +IG GA+ R + EETG +I++
Sbjct: 534 HILGKMQEAMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ + + + ++ ++ I E+E+G +Y+G +T + ++GA V G+ GLLH
Sbjct: 594 DGTITIASNDSAKADEAKRRIAEITA-EVEIGKVYEGAITKILDFGALVNLMPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+S+++HE V +V+D +S GQ + ++ + D +G +KLS+KA+ RP
Sbjct: 653 ISQIAHERVEKVTDYLSEGQIIKVKVLETDEKGRVKLSMKALLDRP 698
>gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. viciae 3841]
gi|123385010|sp|Q1MN44.1|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium leguminosarum bv.
viciae 3841]
Length = 712
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 290/704 (41%), Positives = 439/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H L+ I+LAE A K+ ++++ + S
Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + LAE + + K +R A+D + VK EE + + + +
Sbjct: 241 LESEML-GLAEGELRNAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TPEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RVHILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G +Y+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQVYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|384086170|ref|ZP_09997345.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 692
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 432/702 (61%), Gaps = 13/702 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTV 114
+ ++E + G + + LETG++AR A+GAV++ +T VL T V + +DF PLTV
Sbjct: 1 MAIIRKELDFGGQRLHLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+A+VLS D
Sbjct: 61 NYQEKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
DPDI+A SAAL +S IP+ GPIG R+G + GQ+++NP+ +L+ S L+LV A
Sbjct: 121 RDHDPDILAMLGASAALAISGIPFRGPIGGARVGYVNGQYVLNPSAAQLAESQLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
TR LM++ +A+++SE+ + + H +E LA + GK + + E
Sbjct: 181 TRNAVLMVESEAQQLSEEVMLEAVMFGHAGFQPVIEAIEALAHEVGKTSWNWVAPVADEA 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
++V A ++ ++ K R + L++I Q + L E D + ++ V
Sbjct: 241 LGQQVQAKASGLLQEAYS--LVEKQARSKKLEEIQQHMVAELAAE-DAQRADMVRGFVKK 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ ++R RI+ R+DGR VRPI E+G LP HGS+LF+RG+TQ L TLG
Sbjct: 298 IETGIVRGRILDGAPRIDGRDTKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G RFMLHY+FPPF E G RRE+GHG LA++A+ AVLP +
Sbjct: 358 GDEQIIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPEAS 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPY++RV SEV+ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ E GE
Sbjct: 418 EFPYSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKE-----GE- 471
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L+ AH GRL
Sbjct: 472 -RFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAAALKQAHAGRLH 530
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL M + R + N+PR+ T+ + D +R +IGP G + R + EETG I + D
Sbjct: 531 ILGLMNAVLEKGRVELSDNAPRIITIHINPDKIRDVIGPGGKVIRALTEETGAAIDIQDN 590
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+T+ + +++ + E++V IY G V + ++GAFV G+ GLLH+
Sbjct: 591 GTVTIATVDSEAGAAARRRIELLTA-EVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHI 649
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
S++S E VS V D + GQ + ++ + D +G IKLS+K ++
Sbjct: 650 SQISSERVSDVHDYLKEGQAVRVKVLEVDRQGKIKLSMKDIT 691
>gi|358637268|dbj|BAL24565.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. KH32C]
Length = 700
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/706 (42%), Positives = 449/706 (63%), Gaps = 13/706 (1%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
K+ F G+ +TLETG+IAR A GAV++ MD+T VL+TV ++K + +DF PLTVDY
Sbjct: 5 IKKTFAYGAHTVTLETGEIARQAGGAVIVNMDDTVVLATVVAAKEAKAGQDFFPLTVDYV 64
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQ++ +VLS + +
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPDGFYNEVQIIVTVLSLNPEI 124
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPD+ A A SAAL +S +P+ GPIG R+G + G++++NPT+++L S LNLV A T
Sbjct: 125 DPDMPAMIAASAALAISGVPFMGPIGACRVGYVNGEYVLNPTVEQLKSSQLNLVVAGTEV 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A E+SE+ + + H + + L E AGK + ++ +E +
Sbjct: 185 AVLMVESEANELSEEVMLGSVVFGHQQMQAAIRAINELVEVAGKPEWNWQPPAKNEPLIA 244
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-DEESLQVLPKAVDTVR 356
++ LA A +E F SK R E L++I + A+ E D S L +
Sbjct: 245 RIKELAGAQVEEAFR--ITSKQARTERLNEIRKQAIAAISEGVEDVPSANELKDIFHELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
V+R RI+A R+DGR VRPI G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AGVVRSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRD 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++++ G + F+LHY+FPPF E G+ RREVGHG LA++AL+A LP +F
Sbjct: 363 EQIIDAIAGEYRENFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALVAALPAPEEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
YT+RV SE+ S+GS+SMA+VCGGS+A+MDAG+P++ HVAG+++GL+ E +
Sbjct: 423 SYTIRVVSEITESNGSSSMASVCGGSLAMMDAGVPMRAHVAGIAMGLIKEGN-------R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +GR+ IL
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALGQAREGRMHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M++ +++ R + +PR+ T+K + + +R +IG GA+ R ++EETG I + DG+
Sbjct: 536 GIMKQSLASHRGEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRALQEETGTIIELEDDGS 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+T+ + + E ++++ I E+EVG +Y+G V + ++GA V G+ GLLHVS+
Sbjct: 596 VTISSVSAEGAEAAKKRIEAITA-EVEVGKVYEGTVMRLLDFGAIVNILPGRDGLLHVSQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
+++E V+ V+D V GQ + ++ + D RG I+LS+KA+ +P A+
Sbjct: 655 IANERVNNVADYVKEGQVVRVKVLETDERGKIRLSMKALLEKPAAE 700
>gi|344995762|ref|YP_004798105.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343963981|gb|AEM73128.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 701
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/699 (42%), Positives = 432/699 (61%), Gaps = 12/699 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
+E+ + E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTV
Sbjct: 1 MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D
Sbjct: 61 DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PD++A +S AL +SDIP+ GP G + +G + G+ ++NPT E +S L+LV +
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+++ +MI+ A+E+ E + + A E K +E + + GK K EY+ ++ ++
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPDE 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+KV +A + P K ER + LD++ ++V KA E E EE+L ++ A+
Sbjct: 241 IKQKVREIAYDKVYQYVQIPD--KIERDKKLDELKEEVFKAFEGET-EETLLLVDDALYN 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG
Sbjct: 298 LEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
E Q L+ L KR+M HY+FPPF E G RRE+GHG LAE+AL V+P E+
Sbjct: 358 GEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSED 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S
Sbjct: 418 EFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGS---- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+
Sbjct: 474 --FILLTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLK 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M+ I PR + +P++ D + +R +IGP G + KI ET +I + D
Sbjct: 532 ILDFMKTVIDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+
Sbjct: 592 GRIFVAAPDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+L + V +VV VG + ++ IG D G + LS K
Sbjct: 651 SQLDERRLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689
>gi|383643511|ref|ZP_09955917.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas elodea
ATCC 31461]
Length = 780
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/708 (41%), Positives = 442/708 (62%), Gaps = 21/708 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETGK+AR A+GAV+ + ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 IEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +RE E+E LV R+IDRPIRPLFP GFY+E+ +A VLS DG+ +P
Sbjct: 67 FSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSYDGENEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI++ A SAAL LS +P+ GPIG R+G I G++I+NPT +++ +L+LV A T +
Sbjct: 127 DILSMIAASAALTLSGVPFMGPIGAARVGYINGEYILNPTDAQVAEGELDLVVAATYDAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
+M++ +A+E+SE+ + + AH + ++ ++LAE+A K E + + +K+
Sbjct: 187 MMVESEAKELSEEVMLGAVLFAHDACREVVKAIVKLAEQAAKDPWEIASQDDNAKLKDKI 246
Query: 300 SNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVDTVR 356
L I A + TD S R AL++ K E+ + + K +
Sbjct: 247 KKLIGKDIAAAYKLTDKS----ARSNALNEARAKAKAQFTEDGLSPQEVMAGIKLTKKLE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R I+ +G R+DGR ++RPI E+ LP HGS+LF+RG+TQ + T TLG
Sbjct: 303 AEIVRTAILKDGKRIDGRTTTQIRPIEAETHFLPRAHGSALFTRGETQTIATCTLGTKDA 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + DF
Sbjct: 363 EQMIDGLNGLSYQSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKEDF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+R+ S++ S+GS+SMA+VCGGS+A+MDAG+P++ V+G+++GL+ E KD
Sbjct: 423 PYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEG-------KD 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
Y IL+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A GR IL
Sbjct: 476 YAILSDILGDEDHLGDMDFKVAGTAQGITTMQMDIKIAGITKEIFEAALNQAKAGRAHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GT 655
M + + R++ ++PR+ T D +R +IG G + R+I TG ++ + D G
Sbjct: 536 GEMNKALGEVRSELSAHAPRIETFTIDKSKIREVIGTGGKVIREIVATTGAKVDIDDEGV 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + + +E ++ + ++ E EVG IY G V ++ ++GAFV F GG+ GL+HVSE
Sbjct: 596 IKVSSSDPAQIEAAIKWIKGLV-EEAEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSE 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+ +E V +VSDV+S GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 655 IKNERVEKVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAELE 702
>gi|334130028|ref|ZP_08503831.1| Polyribonucleotide nucleotidyltransferase [Methyloversatilis
universalis FAM5]
gi|333445064|gb|EGK73007.1| Polyribonucleotide nucleotidyltransferase [Methyloversatilis
universalis FAM5]
Length = 705
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/710 (40%), Positives = 440/710 (61%), Gaps = 13/710 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L ++EF G++ + LETG+IAR ++GAV++ ++ET VL+TV + K + +DF PLT
Sbjct: 1 MLNATRKEFMFGAQKVVLETGEIARQSSGAVIVNVEETVVLATVVAQKSAKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQV+ VLS
Sbjct: 61 VDYAEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVQVLSL 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A SAAL +S IP+ GPIG R+G I GQ+++NPT +L S LNLV A
Sbjct: 121 NPEVDADIPAMIGASAALAISGIPFSGPIGAARVGYIDGQYVINPTASQLKDSKLNLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A E+SE+ + + H + + L E AGK + +++ +
Sbjct: 181 GTEAAVLMVESEAMELSEEVMLGAVVYGHEQMQAAINAINELVEVAGKPEWDWQAPARDQ 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAV 352
++S LAEA ++ + K R ++++ + +V + + +
Sbjct: 241 ALWSRISELAEAKLQDAYR--ITQKQVRSQSVNALRDEVIAALTADAATAPDVNTIKNYF 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R RI+ R+DGR VRPI + +P HGS+LF+RG+TQ L TLG
Sbjct: 299 FDLEAGIVRGRILNGEPRIDGRDTRTVRPIAIRNSVMPRTHGSALFTRGETQALVIATLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G RFMLHY+ PPF E G+ RRE+GHG LA++ALLAVLP
Sbjct: 359 TGRDEQIIDALGGEYRDRFMLHYNMPPFATGETGRFGAPKRREIGHGRLAKRALLAVLPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+F Y++RV SE+ S+GS+SMA+VCGGS+ALMDAG+PL+ HVAG+++GL+ + +
Sbjct: 419 PEEFSYSMRVVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGIAMGLIKDGN---- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L AH+ R
Sbjct: 475 ---RFAVLTDILGDEDHLGDMDFKVAGTDSGITALQMDIKIQGITKEIMQVALAQAHEAR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M++ +S R +PRL T+K + + +R +IG GA+ R + EETG I +
Sbjct: 532 KHILGIMQQSMSGAREGVSNYAPRLLTMKINPEKIRDVIGKGGAVIRALTEETGATIDIG 591
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+T+ + N E +++ I E+EVG +Y+G V + ++GA V G+ GLL
Sbjct: 592 DDGTITIASVNSEAAENAKRRIEAITA-EVEVGKVYEGTVLRLLDFGAIVSVLPGKDGLL 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
H+S++++E ++ V+D + GQQ+ ++ + D +G I+LS+KA+ P+++
Sbjct: 651 HISQIANERIANVADHLKEGQQVKVKVLETDEKGRIRLSMKALLAAPDSN 700
>gi|389573204|ref|ZP_10163279.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. M 2-6]
gi|388426901|gb|EIL84711.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. M 2-6]
Length = 705
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/689 (42%), Positives = 439/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLS+ T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+ I+NP +++L SD+NLV A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRVDGKLIINPNVEQLEQSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + +E Q + + GK+K + L + + E+V LAEA +
Sbjct: 195 EVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKEKIDIPLYEVDQALAEEVKQLAEADL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A+ + + V+K EEE DE +++ ++ + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAISAVKKAVVQKFEEEERDEATIKQAKDVLNKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ DI+ E L+ A KGR++ILD M I A
Sbjct: 486 EDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTIPAS 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + +
Sbjct: 546 RGELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTEEDM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAF+E G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G +L ++ D +G + LS KAV
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693
>gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii
OhILAs]
gi|187470976|sp|A8MFB4.1|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii
OhILAs]
Length = 706
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/709 (42%), Positives = 444/709 (62%), Gaps = 21/709 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + FK+E I R++ +E GK+A+ +NG+ +L +T VL +SK S R DF P
Sbjct: 1 MFKVFKKE--IAGRVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASK--SPREGIDFFP 56
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
L+VDY+EK +A G IP +++REG P E +L R+IDRPIRPLFP G+ ++VQ++A+VL
Sbjct: 57 LSVDYEEKMYAAGKIPGGFIKREGRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVL 116
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D PDI+A +S AL +SDIP+ GP + +G + G+ ++NPT DE S L+LV
Sbjct: 117 SVDIDCTPDIVAMLGSSIALSISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSSLDLV 176
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
+ T++ +MI+ A E++E + + AH E + +A + GK+K+E I
Sbjct: 177 VSGTKDAVMMIEAGANEVTEAQMLEAILFAHEEIKNIISFIEEIAAEVGKEKQEVVTLEI 236
Query: 292 SEQTLEKVSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLP 349
+E +V A+ I EA+ T K ER ++ ++ E+ EE +L+ +
Sbjct: 237 NEDFETEVRAYAKTRISEAIRT---VEKLERNAKIELANEETINYFYEKYQEELNLKQIH 293
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+D++ K R I+ + R D RQ DE+RPI CE LP HGS LF+RG TQVL V
Sbjct: 294 TILDSILKEETRNLILYDKKRPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIV 353
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLGA + Q L+ L +KR+M HY+FPP+ + E RRE+GHG LAE+AL +
Sbjct: 354 TLGAIGDVQILDGLGKEESKRYMHHYNFPPYSVGETKMLRSPGRREIGHGALAERALEPM 413
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P ++DFPY +RV SEV+AS+GS+S A+VCG +++L+DAG+PL++ VAG+++GLV E D
Sbjct: 414 IPSQDDFPYAIRVVSEVLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDA 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
IL+DI G+EDHLGDMDFK+AGT G+TAIQ+DIK GI I+ + LE A
Sbjct: 474 VA-------ILSDIQGMEDHLGDMDFKVAGTAKGITAIQMDIKIKGIDEPILKDALEQAR 526
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GRL ILD M+ IS+PR + +PR+ +K D +R +IG G KI E+TG +I
Sbjct: 527 VGRLYILDKMKEAISSPRPELSPYAPRMLKMKIHPDKIREVIGSGGKTINKIIEDTGVKI 586
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ +DGT+ + A+ + E L ++ I+ RE E+G I+KG V + +GAFVE G++
Sbjct: 587 DIENDGTIFIAAQTQEAGELALSIINNIV-REPEIGDIFKGKVIKLMNFGAFVEILPGKE 645
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
GL+H+S L+HE V++V DV++VG ++ ++ I D +G + LS KA+ P+
Sbjct: 646 GLVHISNLAHERVNKVEDVLAVGDEIDVKVIEIDQQGKVSLSRKALLPK 694
>gi|409405576|ref|ZP_11254038.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
GW103]
gi|386434125|gb|EIJ46950.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
GW103]
Length = 711
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/700 (41%), Positives = 440/700 (62%), Gaps = 21/700 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG+IAR A+GAVV+ +++T +L+TV + K +DF PLTVDY EK +
Sbjct: 9 FQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLFP G+ +EVQV+ VLS + + DPDI
Sbjct: 69 AAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL L+ IP+ GP+G R+G I GQ+++NPT +L S L+LV A T LM
Sbjct: 129 PAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVAGTETAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++SE+ + + H ++ +E L GK + ++ +E + +V+
Sbjct: 189 VESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWSAPAKNEALIARVAQ 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT------V 355
LAE + + + K R E L + V +AL E + V A + +
Sbjct: 249 LAEGPLREAYQ--TKDKQARTEKLKAVSAQVNEALVAEAAANN-GVAADAAEVGSILFDL 305
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 306 EAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTAR 365
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPEN 474
+ Q+++ L+G + RFMLHY+ PPF E G RVG RRE+GHG LA++AL+A LP +
Sbjct: 366 DEQKIDGLLGEYSDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALIAALPAAD 424
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+F Y+VR+ SE+ S+GS+SMA+VCGG +ALMDAG+P++ HVAG+++GL+ E +
Sbjct: 425 EFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGN------ 478
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A +GR
Sbjct: 479 -KFAVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHH 537
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL M+ + A R + +PRL T+K + + +R +IG GA+ R + EETG +I +SD
Sbjct: 538 ILGKMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDE 597
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G +T+ + + S ++ +++ + +EVG IY+G V + ++GA V+ G+ GLLH+
Sbjct: 598 GVVTIASVDASAGQEAKRRIEELTA-SVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHI 656
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
S++++E V+ V+D + GQQ+ ++ + D RG +KLS+KA
Sbjct: 657 SQIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKA 696
>gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium
sibiricum 255-15]
gi|226702652|sp|B1YI57.1|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium
sibiricum 255-15]
Length = 739
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 297/718 (41%), Positives = 437/718 (60%), Gaps = 23/718 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
E+G R +T+E G++A+ ANGA ++ ET VL+TV +SK DF PLTV+Y+EK +A
Sbjct: 11 ELGGRPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKDLDFFPLTVNYEEKLYAA 70
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP +++REG P E +L R+IDRPIRPLFP GF H++QV +VLSSD P++ A
Sbjct: 71 GKIPGGFLKREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDNSPEVAA 130
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
S AL +SDIP+ GPI + IGR+ G+FI+NPTM + S SD++L A T+ M++
Sbjct: 131 MIGASIALSISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDIDLQVAGTKHAVNMVE 190
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
A+E+SE+ + + L H + + Q + G++K Y ++ E + ++ A
Sbjct: 191 AGAKEVSEQAMLEAILLGHDVIKELIAFQEEIVAAVGQEKFAYTVASFDETLVNRLK--A 248
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDV--KKALEEECDEESLQVLPKAVDTVRKRVIR 361
EA E K R A++++ + A ++ E L + ++ K +R
Sbjct: 249 EALAEVTTAVQVEEKQARDLAINEVISKYIDQYAADDSITEAQLAEVSGVLNKFVKTEVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I + VR DGR L E+RP+ E G LP HGS LF+RG TQVL TLG +AQ ++
Sbjct: 309 RLITEDKVRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDAQIID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L KRFM HY+FPPF + E RRE+GHG L E+ALL VLP E DFPYT+R
Sbjct: 369 GLGLKAEKRFMHHYNFPPFSVGEARPMRAPGRREIGHGALGERALLPVLPSETDFPYTIR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GS+S A++CG +A+MDAG+PL+ VAG+++GL+ E GE +Y ILT
Sbjct: 429 LVSEVLESNGSSSQASICGSILAMMDAGVPLKAPVAGIAMGLIKE-----GE--NYSILT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT+ GVTA+Q+D+K GI I+ E LE A GRL IL+HM
Sbjct: 482 DIQGMEDHLGDMDFKVAGTKDGVTALQMDMKIGGITRQILEEALEQARLGRLHILEHMNS 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + + +P++ TLK + D +R +IGP G + I +ETG +I + DGT+ + +
Sbjct: 542 VIAEPRVELSKYAPKIVTLKINPDKIRDVIGPGGKVINGIIDETGVKIDIDQDGTVFIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
++ + + ++ I+ RE+ +G + G V V+++GAFVE G+ L+H+SEL+ E
Sbjct: 602 TDQDGINHARQLIEDIV-REVVIGEEFDGTVRRVEKFGAFVELFKGKDALVHISELALER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATD 778
V + DVV +G +L +R D +G + S K + +VEG P ++ A D
Sbjct: 661 VGQTEDVVKLGDKLKVRVTEVDDKGRVNASHKVL----------LVEGMSPEDRAAYD 708
>gi|415776329|ref|ZP_11487913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
gi|425121465|ref|ZP_18523151.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0569]
gi|425290304|ref|ZP_18681130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3006]
gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
gi|408210930|gb|EKI35486.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3006]
gi|408566608|gb|EKK42675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0569]
Length = 690
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/683 (42%), Positives = 436/683 (63%), Gaps = 22/683 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP ++ RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A+ +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ ++E +V+ LAEA + + TD
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVR 370
K ER +D I + L +E DE L + A++ K V+R R++A R
Sbjct: 242 ----KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSRVLAGEPR 294
Query: 371 VDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKR 430
+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L+G T
Sbjct: 295 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 354
Query: 431 FMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASD 490
F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+ S+
Sbjct: 355 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 414
Query: 491 GSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHL 550
GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y +L+DILG EDHL
Sbjct: 415 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDILGDEDHL 467
Query: 551 GDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQD 610
GDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 468 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 527
Query: 611 DRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKV 669
+PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A + +
Sbjct: 528 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 587
Query: 670 LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVS 729
+ +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ + V +V+D +
Sbjct: 588 IRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 646
Query: 730 VGQQLSLRCIGQDVRGNIKLSLK 752
+GQ++ ++ + D +G I+LS+K
Sbjct: 647 MGQEVPVKVLEVDRQGRIRLSIK 669
>gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea
psychrophila LSv54]
gi|81641366|sp|Q6AJY9.1|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea
psychrophila LSv54]
Length = 692
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/701 (42%), Positives = 445/701 (63%), Gaps = 20/701 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
K E +I +LI++ETGK+A+ A+G++V+ T VL TV +K + DFLPLT++YQE
Sbjct: 4 KVEADIDGKLISIETGKLAKQASGSIVISCGGTVVLVTVVGAKTSNPNVDFLPLTIEYQE 63
Query: 119 KQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
K A G +P Y RRE G P ++E+L RIIDRP+RPLFP G+ E QV+A+VLS+D
Sbjct: 64 KFSAVGRVPGNYFRREIGRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIATVLSADQVN 123
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
PD++A SAAL +S IP+ GP+ RI I G++++NPT EL S ++L+ ACTR
Sbjct: 124 SPDVLALTGASAALSISHIPFAGPVAGGRIAYIDGKYVLNPTFAELESSSMDLMVACTRN 183
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A E+SE ++ + A + Q L G +K + +I +
Sbjct: 184 AIVMVEGKADELSEDEILGAIFFAFENLQPLINLQDELQRANGLEKIVVESPVIDAELKA 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD-EESLQV--LPKAVDT 354
KV +A A ++ V+T + K ERG+ D D+KK + + D EE L+ + +
Sbjct: 244 KVVEIAAAGMQKVYT--TVDKLERGKVYD----DLKKEVVAQLDTEEGLRASEISSLLSD 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+K +R++ + GVR+ GR DE+R I E+ LP HGS+LF+RG+TQ L T TLG+
Sbjct: 298 FKKTYLREKTVNTGVRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSE 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ QR+E+L G ++RFMLHY+FPP+C+ E G +RR++GHGTLA + L AVLP E
Sbjct: 358 RDKQRVETLNGETSRRFMLHYNFPPYCVGEARFLRGPSRRDIGHGTLATRGLEAVLPSEE 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPY +RV SE++ S+GS+SMA+VCGGSMA+MDAG+PL+ V+G+++GL+ E GE
Sbjct: 418 DFPYAIRVVSEILESNGSSSMASVCGGSMAMMDAGVPLKRPVSGIAMGLIKE-----GE- 471
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
IL+DILG EDHLGDMDFK+ GT G+TA+Q+DIK G+ DI+ L+ A +GR+
Sbjct: 472 -GVAILSDILGDEDHLGDMDFKVVGTCDGITALQMDIKIDGVSRDIMSNALDQAKRGRMH 530
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL+ M + I+ R + ++P+ K D +R +IGP G + +++ + +I V D
Sbjct: 531 ILEEMSKGIAEARAEVVEHAPKYFIHKISQDKIRDIIGPGGKIIKELSAQYDAKIEVDDS 590
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + + N ++ E ++E+V I E+EVG +Y G V ++K++GAFVE G GL+H+
Sbjct: 591 GLVKMFVANGALAEALVERVKSITA-EVEVGAVYTGKVKTIKDFGAFVEILPGTDGLVHI 649
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
SEL+ E V V+DVV+ G + ++ + D RG I+LS KA+
Sbjct: 650 SELALERVKDVTDVVNEGDTIEVKVLDVDNRGRIRLSRKAL 690
>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae SmR1]
gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
seropedicae SmR1]
Length = 712
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/700 (41%), Positives = 440/700 (62%), Gaps = 21/700 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG+IAR A+GAVV+ +++T +L+TV + K +DF PLTVDY EK +
Sbjct: 9 FQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLFP G+ +EVQV+ VLS + + DPDI
Sbjct: 69 AAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL L+ IP+ GP+G R+G I GQ+++NPT +L S L+LV A T LM
Sbjct: 129 PAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVAGTETAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++SE+ + + H ++ +E L GK + ++ +E + +VS
Sbjct: 189 VESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNEALIARVSQ 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT------V 355
LAE + + + K R E L + V +AL E + V A + +
Sbjct: 249 LAEGPLREAYQ--TKDKQARTEKLKAVTAQVNEALVAEAAANN-GVAADAAEVGSILFDL 305
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 306 EAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTAR 365
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPEN 474
+ Q+++ L+G + RFMLHY+ PPF E G RVG RRE+GHG LA++AL+A LP +
Sbjct: 366 DEQKIDGLLGEYSDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALIAALPAAD 424
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+F Y+VR+ SE+ S+GS+SMA+VCGG +ALMDAG+P++ HVAG+++GL+ E +
Sbjct: 425 EFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGN------ 478
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A +GR
Sbjct: 479 -KFAVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHH 537
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL M+ + A R + +PRL T+K + + +R +IG GA+ R + EETG +I +SD
Sbjct: 538 ILGKMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDE 597
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G +T+ + + S ++ +++ + +EVG IY+G V + ++GA V+ G+ GLLH+
Sbjct: 598 GVVTIASVDASAGQEAKRRIEELTA-SVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHI 656
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
S++++E V+ V+D + GQQ+ ++ + D RG +KLS+KA
Sbjct: 657 SQIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKA 696
>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
ferrireducens T118]
gi|122479529|sp|Q21YD1.1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
Length = 706
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/709 (41%), Positives = 443/709 (62%), Gaps = 18/709 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLT 113
+ + F+ G +T+ETG+IAR A+GAV+L MD T VL+TV + ++G + +DF PLT
Sbjct: 3 IFNKVTKTFQWGQNTVTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EV V+ LS
Sbjct: 63 VDYLEKTYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A A SAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAALIAVSAALSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK ++K E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERG--EALDKIGQDVKKALEEECDEESLQVLPKA 351
+ KV LA +EA + + R EA + D+K + +S+ V
Sbjct: 243 PLIAKVGALAAHKLEAAYQIRNKQARTRACREAYAVVMADLKL---DGVAFDSVAVEGML 299
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
D + +++R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TL
Sbjct: 300 FD-IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVL 470
G +AQR+++L G RFMLHY+ PPF E G RVG RRE+GHG LA++AL+AVL
Sbjct: 359 GTERDAQRIDALSGDYEDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALMAVL 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + +FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 418 PSKEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEEN-- 475
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A +
Sbjct: 476 -----RFAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKE 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R+ IL M+ ++ +T+ +PRL T+K + D +R +IG G++ R + EETG +I+
Sbjct: 531 ARMHILGKMQEAMAEAKTEVSTFAPRLFTMKINPDKIRDVIGKGGSVIRALTEETGTQIN 590
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+T+ + + + E+ ++ I E+E+G IY+G +T + ++GA V G+ G
Sbjct: 591 IDEDGTITIASADPAKAEEAKRRIQQITA-EVEIGKIYEGPITKILDFGALVNLLPGKDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
LLH+S+++HE V +V+D +S GQ + ++ + D +G IKLS+K + RP
Sbjct: 650 LLHISQIAHERVEKVTDYLSEGQIVKVKVMETDEKGRIKLSMKVLLDRP 698
>gi|15887437|ref|NP_353118.1| polyribonucleotide nucleotidyltransferase [Agrobacterium fabrum
str. C58]
gi|187470963|sp|A9CKQ7.1|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium fabrum
str. C58]
Length = 713
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 436/702 (62%), Gaps = 25/702 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ A SAAL LS IP+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSMISEQTLE 297
M++ +A+E++E+ + + H ++ I+LAE A K+ +E++ S + + L
Sbjct: 188 MVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEML- 246
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
LAE + + K R A+D + VK E E P+ + V K
Sbjct: 247 ---GLAETELRTAYK--ITEKAARYAAVDAVKTKVKAHFLPEEGEAKYS--PEEIGAVFK 299
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 HLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 360 GEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTA 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE
Sbjct: 420 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRK 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 533 HILGEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIED 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H
Sbjct: 593 DGTVKIASASGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 652 ISQLASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|335043383|ref|ZP_08536410.1| polyribonucleotide nucleotidyltransferase [Methylophaga
aminisulfidivorans MP]
gi|333789997|gb|EGL55879.1| polyribonucleotide nucleotidyltransferase [Methylophaga
aminisulfidivorans MP]
Length = 699
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/702 (42%), Positives = 431/702 (61%), Gaps = 12/702 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
+ + K+ + G ++LETGKIAR A GAV+ + ET VL TV K +DF PLTV
Sbjct: 1 MNSVKKTVQYGQHTLSLETGKIARQAGGAVIASLGETAVLVTVVGKKEVKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ ++ G IP + +REG P E+E L R+IDRP+RPLFP GF +EVQV+A+V+ D
Sbjct: 61 NYQERAYSAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPNGFINEVQVVATVIGLD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI A SAAL +S IP+ GP+G R+G I G +++NP +L S L+LV A
Sbjct: 121 PEIDPDIPAMIGASAALAISGIPFNGPLGAARVGYIDGAYVLNPNKSQLDNSALDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A E+ E+ + + H + ++ L +AGK ++ E
Sbjct: 181 TESAVLMVESEASELPEEVMLGSVMFGHQQMQTAMDLIKALQAEAGKPAWDWTAPEKDET 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
V A A I+A + K R + L K+ +AL + E + +
Sbjct: 241 LYNMVKEQAYAGIQAAYA--ISDKLARLDELSKVRNAAVEALVSDESEYDEEEVKGVFSK 298
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++R RIIA R+DGR VRPI+ E+G +P +HGS+LF+RG+TQ + TLGA
Sbjct: 299 LEKELVRGRIIAGEPRIDGRDTASVRPIFVETGLVPRVHGSALFTRGETQAIVIATLGAE 358
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ ++++ G RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P
Sbjct: 359 RDAQTIDAVEGEYRDRFMLHYNFPPYCVGETGMVGSPKRREIGHGKLAKRGVQAVMPTAA 418
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL+ E +
Sbjct: 419 EFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEEN------ 472
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
Y +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A GR+
Sbjct: 473 -GYAVLTDILGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRMH 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M IS+ RT+ +PR+ T+K + D +R +IG GA R I EETG I + D
Sbjct: 532 ILTKMNAVISSHRTEMSEFAPRIITIKINADKIRDVIGKGGATIRAITEETGATIDIQDD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ + + + + ++ L +V+ I E+EVG IY+G V + ++GAFV G+ GL+H+
Sbjct: 592 GTVMIFSSDYNAGQQALRRVEDITA-EVEVGKIYEGRVAKLMDFGAFVTILPGKDGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
S++S E V VSD +S G + ++ + D +G I+LS+KAV+
Sbjct: 651 SQISEERVENVSDKLSEGDLIQVKVLEVDRQGRIRLSMKAVN 692
>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
Length = 713
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 312/724 (43%), Positives = 448/724 (61%), Gaps = 31/724 (4%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
+ E EI R + LETGK A+ A+G+V++ +T VL+T +S DFLPLTV+++E+
Sbjct: 13 RYETEIAGRTLILETGKYAKQASGSVLVRYGDTVVLATAQASDEPVEADFLPLTVEFEER 72
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQV+ +VLS+D K P
Sbjct: 73 HYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKNPP 132
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+ A SAALMLSDIPW GP+ +R+G + GQ ++NPT+ EL S L+LV A +R+
Sbjct: 133 DILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESALDLVVAGSRDAI 192
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISEQTLEK 298
LM++ A+E+ E+ L L AH E L+ Q R+A + GK K + + E+ E
Sbjct: 193 LMVEAGAQEVDEETLVQALEFAHREMQPILDLQERMARELGKPKMAWTPPETLPEEEKEA 252
Query: 299 VSNLA-EAHIEAVFTDPSYSKFERGEALDKIGQD-VKKAL----EEECDEESLQVLPKAV 352
+ LA E + V + SK ER AL + + +AL + DE + A
Sbjct: 253 LYRLALEKGLSQVLQ--TASKGERSRALSAFAESLILEALPRLEDGAPDEGKRPLYESAF 310
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
D + +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL TVTLG
Sbjct: 311 DEIVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 370
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++ L T F++HY+FPPF EV + G++RREVGHG LA++AL AVLP
Sbjct: 371 TGRDEQIIDDLGIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPS 430
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ FPYT+RV +V+ S+GS+SMATVC GS+ALMDAG+P++ VAGV++GLV E + +
Sbjct: 431 QEAFPYTIRVVGDVLESNGSSSMATVCAGSLALMDAGVPVKAPVAGVAMGLVWENEKAV- 489
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L A + R
Sbjct: 490 ------ILTDILGLEDALGDMDFKVAGTRQGVTALQMDNKVGGLPREVLKEALLQAREAR 543
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L+ILD ME + APR +PR+ +LK D + +IGP G R + EE G + +
Sbjct: 544 LKILDLMEMVLPAPRPSLKPFAPRILSLKVPVDKIGIVIGPGGKNVRAL-EELGVEVDIE 602
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + + EK +++ + RE +VG IY+G VT + +GAF+ G +GLL
Sbjct: 603 EDGTIRIYSSDMEKAEKAKARIEELT-REAKVGEIYEGTVTRITPFGAFISLFPGTEGLL 661
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVP 771
H+S+++ V RV D + VG + ++ D +G I L RPE +EG +P
Sbjct: 662 HISQIAPGRVKRVEDHLKVGDVIKVKVHRIDEKGKIDLI------RPE------LEGKIP 709
Query: 772 VNKQ 775
++
Sbjct: 710 PRRR 713
>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Ames]
gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase [Bacillus anthracis str. Sterne]
gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Bacillus anthracis str. A2012]
gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229603609|ref|YP_002868046.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A0248]
gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Australia 94]
gi|81583685|sp|Q81WM8.1|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782703|sp|C3P5L0.1|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Ames]
gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
'Ames Ancestor']
gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Sterne]
gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0248]
Length = 712
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV+ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
Length = 717
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|365159416|ref|ZP_09355597.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423425943|ref|ZP_17402974.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|423437262|ref|ZP_17414243.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|423503516|ref|ZP_17480108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|423582017|ref|ZP_17558128.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|423585784|ref|ZP_17561871.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|423635422|ref|ZP_17611075.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|423641112|ref|ZP_17616730.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|423649670|ref|ZP_17625240.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|423656666|ref|ZP_17631965.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|449090749|ref|YP_007423190.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|363625414|gb|EHL76455.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401110690|gb|EJQ18589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|401120417|gb|EJQ28213.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|401212896|gb|EJR19637.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|401233130|gb|EJR39626.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|401278173|gb|EJR84109.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|401280173|gb|EJR86095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|401282950|gb|EJR88847.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|401290407|gb|EJR96101.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|402458870|gb|EJV90610.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|449024506|gb|AGE79669.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 712
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|429098486|ref|ZP_19160592.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
582]
gi|426284826|emb|CCJ86705.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
582]
Length = 690
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/686 (42%), Positives = 437/686 (63%), Gaps = 25/686 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV +K +DF PLT++YQE+ +A G IP + RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT +EL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGSARVGYINDQYVLNPTQEELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ +E +V LAE+ + + TD
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANETLNARVKALAESRLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKALEEE------CDEESLQVLPKAVDTVRKRVIRKRIIAE 367
K ER +D I DV AL+ E DE L + A++ K V+R R++A
Sbjct: 242 ----KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIE---KNVVRSRVLAG 294
Query: 368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G
Sbjct: 295 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGER 354
Query: 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVM 487
T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+
Sbjct: 355 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 414
Query: 488 ASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLE 547
S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE ++ +L+DILG E
Sbjct: 415 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--NFVVLSDILGDE 467
Query: 548 DHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPR 607
DHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 468 DHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 527
Query: 608 TQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVM 666
+ +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ + A +
Sbjct: 528 GDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 587
Query: 667 EKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSD 726
+ + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D
Sbjct: 588 KHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 646
Query: 727 VVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ +GQ++ ++ + D +G ++LS+K
Sbjct: 647 YLQMGQEVPVKVLEVDRQGRVRLSIK 672
>gi|386706431|ref|YP_006170278.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli P12b]
gi|383104599|gb|AFG42108.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli P12b]
Length = 689
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/683 (42%), Positives = 435/683 (63%), Gaps = 22/683 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP ++ RREG
Sbjct: 1 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 60
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 61 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 120
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 121 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 180
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ ++E +V+ LAEA + + TD
Sbjct: 181 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 240
Query: 314 PSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVR 370
K ER +D I + L +E DE L + A++ K V+R R++A R
Sbjct: 241 ----KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSRVLAGEPR 293
Query: 371 VDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKR 430
+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L+G T
Sbjct: 294 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 353
Query: 431 FMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASD 490
F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+ S+
Sbjct: 354 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 413
Query: 491 GSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHL 550
GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y +L+DILG EDHL
Sbjct: 414 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDILGDEDHL 466
Query: 551 GDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQD 610
GDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 467 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 526
Query: 611 DRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKV 669
+PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A + +
Sbjct: 527 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 586
Query: 670 LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVS 729
+ +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ + V +V+D +
Sbjct: 587 IRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 645
Query: 730 VGQQLSLRCIGQDVRGNIKLSLK 752
+GQ++ ++ + D +G I+LS+K
Sbjct: 646 MGQEVPVKVLEVDRQGRIRLSIK 668
>gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0010_01E20]
Length = 701
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/694 (42%), Positives = 423/694 (60%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEK 119
+EF+ G + +ET K+A+ A+G+V++ + T VL+TV +K +DF PLTV+YQEK
Sbjct: 6 KEFQYGDETVVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTVNYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + RREG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D QDP
Sbjct: 66 TYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSADKDQDP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI A TSAAL +S IP+ GP+G R+G I G +I+NP + L S LN+ A T
Sbjct: 126 DIAAMIGTSAALAISGIPFKGPLGAARVGYIDGNYILNPGYESLKESMLNMTVAGTESAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E++E ++ + H E ++ LA AGK+ +++ + E E V
Sbjct: 186 LMVESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGKEAWDWRAAAKDESLQETV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+ + + + + K ER A+ + Q + + E S + V K +
Sbjct: 246 ATTIKTDLGEAYRISN--KMERQTAVSALRQKAIEQIAGGDAEYSSDEISDTFAKVEKDL 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+R++ R+DGR L VRPI E G LP HGS+LF+RG+TQ L TLG +A
Sbjct: 304 VRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAAL 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
+++L G FMLHY+FPP+ + E G G RRE+GHG LA + + A LP DFPYT
Sbjct: 364 IDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSASLPNAEDFPYT 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+RV SE+ S+GS+SMA+VCG S+ALMDAG+P+ VAGV++GLV E + Y +
Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGVPITAPVAGVAMGLVKEGN-------RYAV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L AH+ R+ IL M
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTDKGVTALQMDIKIEGITEEIMESALAQAHEARIHILGEM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTV 658
+ IS R++ N+P + T+ D +R +IG GA R I EETG + ++ DG++ +
Sbjct: 537 NKVISESRSELSANAPAMVTMNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A++ S + + ++ I E EVG IY+G V + ++GAFV G+ GLLH+S+++
Sbjct: 597 YAEDASAKDAAVARIQEITA-EAEVGQIYEGTVARIVDFGAFVTILPGKDGLLHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V VSD +S GQ + + + D RG IKLS+K
Sbjct: 656 NRVENVSDYLSEGQDVEVVVLDVDQRGRIKLSIK 689
>gi|433771430|ref|YP_007301897.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
australicum WSM2073]
gi|433663445|gb|AGB42521.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
australicum WSM2073]
Length = 715
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/704 (42%), Positives = 442/704 (62%), Gaps = 24/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ETKVL+TV S K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF AG+ ++ Q++ +V+ D + D
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAAGYKNDTQIVVTVVQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ ATSAAL LS +P+ GPIG R+G I G++++NP +DE+ S L+L+ A T +
Sbjct: 126 PDILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHVDEMQESKLDLIVAGTTDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSMISEQT 295
LM++ +A+E+ E+ + + H ++ I+LAE A K+ +++ S + +
Sbjct: 186 VLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSALEAEM 245
Query: 296 LEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKA 351
L+ V + L+ A+ + K +R A+D + VK A E E + + + +
Sbjct: 246 LKIVGDELSNAY-------KNVDKQKRYAAVDAVKAKVKAAFAPAEGEDAKYTSEQIGSV 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L TL
Sbjct: 299 FKELQAKVVRWNILDTGARIDGRDLSTVRKIVSEVGVLPRTHGSALFTRGETQALVVATL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G ++F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 359 GTGEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 419 SADQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE----- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A G
Sbjct: 474 GE--RFAVLSDILGDEDHLGDMDFKVAGTEGGITSLQMDIKIDGITEEIMKIALGQAKDG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M ++ R + +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 532 RLHILGEMSHALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKIASSNAKEIEAAKKWIHTIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+++ V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLANDRVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans BC]
gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans K601]
gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans BC]
gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans K601]
Length = 731
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/698 (40%), Positives = 434/698 (62%), Gaps = 12/698 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR A+GAV++ +D+T VL+TV +SK +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GFY+EV V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G I G++++NP S ++LV A T LM
Sbjct: 131 AAMIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVAGTETAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++ E + + H + ++ L AGK +++ E + KV+
Sbjct: 191 VESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDAGKPVWDWQPEAKDEALIAKVAE 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
L E + A + + +K R +A + VK L E+ E + + + R++R
Sbjct: 251 LGEGTLRAAYQN--RNKQLRTQACREAYAAVKAGLTEQGVEFDAVKVDNMLFDIEARIVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR++
Sbjct: 309 SQILAGEPRIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGTERDAQRID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G RF+ HY+ PPF EVG+ RREVGHG LA++AL+A LP + +FPYT+R
Sbjct: 369 ALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSKEEFPYTIR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +LT
Sbjct: 429 VVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------KFAVLT 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
+ +T+ +P+L T+K + + +R +IG GA R + +ETG +I++ DGT+T+ A
Sbjct: 542 AMGEAKTEISSFAPKLFTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAA 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ ++ +++ I E+E+G +Y+G VT V ++GA + G+ GLLH+S+++HE
Sbjct: 602 TEAAKADEAKRRIEEITA-EVEIGKVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V RV D + GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 661 VERVGDYLQEGQIVKVKVLETDDKGRVKLSMKALAERP 698
>gi|407781011|ref|ZP_11128231.1| polynucleotide phosphorylase/polyadenylase [Oceanibaculum indicum
P24]
gi|407208437|gb|EKE78355.1| polynucleotide phosphorylase/polyadenylase [Oceanibaculum indicum
P24]
Length = 708
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 299/707 (42%), Positives = 434/707 (61%), Gaps = 22/707 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ +++E E G R + LETGKIAR A+GAV+ ET VL T +K +DF PLT
Sbjct: 1 MFTVYRKEIEWGGRTLVLETGKIARQAHGAVMATYGETTVLCTAVGAKAPKEGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E+E+L R+IDRPIRPLF + +E QV+ +VLS
Sbjct: 61 VNYQEKTFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFHPSYRNETQVVCTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A SAAL LS +P+ GPIG R+G G++I+NP +E+S S L+LV A
Sbjct: 121 DLENDPDIVAMVGASAALTLSGMPFMGPIGAARVGYKDGEYILNPLQEEVSTSQLDLVLA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+E LM++ +A E+SE+ + + H ++ I LAE+A K+ + L+ +E
Sbjct: 181 GTQEGVLMVESEAHELSEEIMLGAVTFGHDAMQAVIDAIIELAEQAAKEP--WDLTPPAE 238
Query: 294 ---QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV--L 348
+ +V+ L A + + + K ER + + +VK L EE L + L
Sbjct: 239 GLDKLQARVAELGRAKLVEAYKETQ--KAERYAKVGAVKDEVKAVL---AGEEGLPLDKL 293
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ + V+R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 294 GSVLKELEADVVRGAILDTGLRIDGRDTKTVRPIVSEVGVLPRTHGSALFTRGETQAIVV 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +AL
Sbjct: 354 TTLGTGQDEQIIDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRALRP 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP + DFPYT+R+ SE+ S+GS+SMATVCG S+++MDAG+PL+ VAG+++GL+ E D
Sbjct: 414 LLPAKEDFPYTIRIVSEITESNGSSSMATVCGSSLSMMDAGVPLKRPVAGIAMGLIKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK I +I+ L+ A
Sbjct: 474 -------RFAVLSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKITSITKEIMKIALDQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GRL IL M + ++ R N+PR+ T+ D +R +IGP G + R+I E TG +
Sbjct: 527 KGGRLHILGEMAKALTGAREGVSENAPRITTINIPKDKIRDIIGPGGKVIREICEVTGAK 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DG + V A + +K + + I+ E EVG IY G V V ++GAFV F G +
Sbjct: 587 IDIDDDGVVKVAAVSDESSQKAINWIREIVA-EPEVGVIYTGKVVKVMDFGAFVNFLGPK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+SEL+ V +V+DVV VG + ++ +G D RG +KLS+K +
Sbjct: 646 DGLVHISELAEGRVGKVTDVVDVGATVKVKVLGFDDRGKVKLSMKKI 692
>gi|381190722|ref|ZP_09898239.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
gi|380451431|gb|EIA39038.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
Length = 713
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 311/729 (42%), Positives = 450/729 (61%), Gaps = 31/729 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
V + + E + R + LETGK A+ A+G+V++ +T VL+T +S+ DFLPLTV
Sbjct: 7 VPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEADFLPLTV 66
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+++E+ +A G IP ++MRREG P E+ +L R+ DRPIRPLFP GF HEVQ++ +VLS+D
Sbjct: 67 EFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSAD 126
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K PDI+ A SAALMLSDIPW GPI +R+G I G F++NPT+ EL S L+LV A
Sbjct: 127 QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAG 186
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISE 293
++E LM++ +A E+ E+ L L AH E LE Q +A + K K + + E
Sbjct: 187 SKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPE 246
Query: 294 QTLEKVSNLA-EAHIEAVFTDPSYSKFERGEALDK-----IGQDVKKALEEECDEESLQV 347
+ E + LA E + V + SK ER AL + I + + K + DE +
Sbjct: 247 EEKEALYRLALERGLSQVLQ--TASKGERSRALSEFAERLIAEALPKGEDGTPDEGKKPL 304
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
A D V +R +R+ ++ EG R DGR ++RPI+ E LP HGS++F+RG+TQVL
Sbjct: 305 YESAFDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TVTLG + Q L+ L T++F++HY+FPPF EV + G++RREVGHG LA++AL
Sbjct: 365 TVTLGTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALK 424
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AV+P E DFPYT+RV +V+ S+GS+SMATVC G +ALMDAG+P++ VAGV++GLV E
Sbjct: 425 AVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEE 484
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + ILTDILGLED LGDMDFK+AGTR GVTA+Q+D K G+P +++ E L
Sbjct: 485 NRAV-------ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A + RL+ILD ME + APR + +PR+ +LK + + +IGP G R + EE G
Sbjct: 538 AREARLKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGV 596
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+ + DGT+ + + + + ++++ + RE +VG IY+G VT + +GAF G
Sbjct: 597 EVDIEEDGTVRIYSSDLQAALEAKKRIEDLT-REAKVGEIYEGTVTRITPFGAFXSLFPG 655
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVV 766
+GLLH+S+++ V RV D + VG + ++ D RG I L RPE +
Sbjct: 656 TEGLLHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLI------RPE------L 703
Query: 767 EGSVPVNKQ 775
EG +P ++
Sbjct: 704 EGKIPPRRR 712
>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
Length = 712
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 443/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+S+ DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|451966448|ref|ZP_21919701.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda NBRC
105688]
gi|451314749|dbj|GAC65063.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda NBRC
105688]
Length = 707
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 442/694 (63%), Gaps = 14/694 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + PD
Sbjct: 68 YAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E LA + GK + E+ ++ ++VS
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQQRVS 247
Query: 301 NLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + EA +++ + +D+I + V L E + + + K V
Sbjct: 248 EMAEARLGEAYHITEKQARYAK---VDEIKESVIADLLAEDASLDAGEISDILGALEKSV 304
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ
Sbjct: 305 VRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQN 364
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P + +FPYT
Sbjct: 365 IDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPYT 424
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQD-------NFVV 477
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL M
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVM 537
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I+APR +PR+ T+K + + ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 538 EQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++
Sbjct: 598 AATDGDKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +V+D + +GQ+++++ + D +G ++LS+K
Sbjct: 657 KRVEKVTDYLQMGQEVAVKVLEVDRQGRVRLSIK 690
>gi|420322133|ref|ZP_14823957.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2850-71]
gi|391246542|gb|EIQ05803.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2850-71]
Length = 690
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/683 (42%), Positives = 435/683 (63%), Gaps = 22/683 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP ++ RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ ++E +V+ LAEA + + TD
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVR 370
K ER +D I + L +E DE L + A++ K V+R R++A R
Sbjct: 242 ----KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSRVLAGEPR 294
Query: 371 VDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKR 430
+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L+G T
Sbjct: 295 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 354
Query: 431 FMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASD 490
F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+ S+
Sbjct: 355 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 414
Query: 491 GSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHL 550
GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y +L+DILG EDHL
Sbjct: 415 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDILGDEDHL 467
Query: 551 GDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQD 610
GDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 468 GDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 527
Query: 611 DRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKV 669
+PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A + +
Sbjct: 528 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 587
Query: 670 LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVS 729
+ +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ + V +V+D +
Sbjct: 588 IRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 646
Query: 730 VGQQLSLRCIGQDVRGNIKLSLK 752
+GQ++ ++ + D +G I+LS+K
Sbjct: 647 MGQEVPVKVLEVDRQGRIRLSIK 669
>gi|403530115|ref|YP_006664644.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
RM-11]
gi|403232187|gb|AFR25930.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
RM-11]
Length = 733
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/720 (41%), Positives = 442/720 (61%), Gaps = 26/720 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKFYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G Q+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H L+ I+LAE A K +++
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDF------- 233
Query: 294 QTLEKVSNLAEAHIEAVFTD--PSYS---KFERGEALDKIGQDVKKALEEECDEE---SL 345
E +S+L A +E V D +Y+ K ER A+D + ++ E +E S
Sbjct: 234 -IPEDLSDLETAMLEMVEQDIRKAYTITDKQERSTAIDVLKTEIINKFMSETEENCKFSA 292
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 293 DQIATVFKQLQAKIVRSNILDTKRRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL +AG+++GL+
Sbjct: 413 IHPMLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + IL+DILG EDHLGDMDFK+AGT+ G+TA+Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAILSDILGDEDHLGDMDFKVAGTKNGITALQMDIKIDGITEEIMKIAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQAKDGRIHILNEMAKALTSARDELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQT 585
Query: 646 GGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ D GT+ + + + +E + I+ E EVGGIY+G V E+GAFV F
Sbjct: 586 GAKINIEDNGTIKIASADARTIEAAKRWIHSIVD-EPEVGGIYQGTVVKTAEFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
G + GL+H+S+L+ E V++ ++VV G ++ ++ +G D RG ++LS+K V + ++ G
Sbjct: 645 GSRDGLVHISQLTTERVTKTTNVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEITG 704
>gi|407938227|ref|YP_006853868.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. KKS102]
gi|407896021|gb|AFU45230.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. KKS102]
Length = 747
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/707 (40%), Positives = 444/707 (62%), Gaps = 14/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+ G + + +ETG+IAR A+GAV++ +D+T VL+TV +SK +DF PLT
Sbjct: 3 IFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF++EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVVHTISL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A ATSAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK +++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNVAINAIHELVRDAGKPVWQWEAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAV 352
+ KV LA+ + A + +K R +A + V L+ + E +S++V
Sbjct: 243 ALIAKVVALADDKLRAAYQ--IRNKQARTQACREAYAAVMAGLKADGVEFDSVKVEGMLF 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
D + ++R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG
Sbjct: 301 D-IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRAHGSALFTRGETQALVVTTLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQR+++L G RFM+HY+ PPF EVG+ RRE+GHG LA++AL+AVLP
Sbjct: 360 TERDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPT 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ +FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ + +
Sbjct: 420 KEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDAN---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R
Sbjct: 476 ---RFAVLTDILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEAR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
+ IL M+ + +T+ +P+L T+K + + +R +IG GA+ R + EETG +I++
Sbjct: 533 MHILGKMQEAMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIE 592
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+T+ A + + ++ +++ I E+E+G IY+G VT + ++GA + G+ GLL
Sbjct: 593 EDGTITIAATDAAKADEAKRRIEQITA-EVEIGKIYEGPVTKILDFGALINLLPGKDGLL 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
H+S+++HE V +VSD ++ GQ + ++ + D +G IKLS+K ++ RP
Sbjct: 652 HISQIAHERVEKVSDYLTEGQIVKVKVMETDEKGRIKLSMKVLADRP 698
>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|423412388|ref|ZP_17389508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|423431827|ref|ZP_17408831.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|401104456|gb|EJQ12433.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|401116583|gb|EJQ24421.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
Length = 712
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|453329188|dbj|GAC88665.1| polynucleotide phosphorylase [Gluconobacter thailandicus NBRC 3255]
Length = 716
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 311/718 (43%), Positives = 445/718 (61%), Gaps = 29/718 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + F++E E R + LETGKIAR A+GAV++ +T VL T +K SV+ DF P
Sbjct: 1 MFDYFRKEIEWAGRPLILETGKIARQADGAVMVTYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
+TV+YQEK +A G IP + +REG P E E+L R+IDRP+RPLFP F +EVQV A+VL
Sbjct: 59 MTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPLRPLFPENFRNEVQVTATVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP I++ SAAL LS IP+ GP+G RIGRI G+F+VNPT+ E+ S L+LV
Sbjct: 119 SHDMENDPAIVSLIGCSAALTLSGIPFFGPVGAARIGRIDGKFVVNPTLSEVKDSTLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY----K 287
A T E LM++ +A E+SE+ + + L H +E I LAE A K + K
Sbjct: 179 VAGTSEGVLMVESEASELSEETMLEAVTLGHTSFQPVIEAIIALAEHAAKAPWDLPSLTK 238
Query: 288 LSMISEQTLEKVSN--LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + +EK+ N +AEA+ E V Y K GEA D+I + + EE D E
Sbjct: 239 EEIALRKRVEKIGNKLMAEAYKERV-KQARYKKV--GEAKDRINEILA---EEGFDVELA 292
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ + K ++ +V+R I+ G+R+DGR L VRPI E G LP HGSSLF+RG+TQ
Sbjct: 293 KPMLKELEA---QVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQA 349
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG + Q +++L G F+LHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 350 LVVATLGTGQDEQIIDALEGEYRSNFLLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRA 409
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
L +LP + FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 410 LHPLLPSKEQFPYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIK 469
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E + + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+ L
Sbjct: 470 -------EDRGFAVLSDILGDEDHLGDMDFKVAGTDQGITALQMDIKITSITPEIMQIAL 522
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + ++ R N+P++ T+ + +R +IG G + R+I E +
Sbjct: 523 EQARDGRIHILGEMAKALTEGRDDVSGNAPKITTMSVPKEKIRDVIGSGGKVIREIVEYS 582
Query: 646 GGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G ++ + DGT+T+ A N +K + +++ I+ E E+G IY G V ++GAFV F
Sbjct: 583 GAKVDIGDDGTITIAASNDEQAQKAIARIEGIVA-EPEIGRIYDGKVVKTADFGAFVNFL 641
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ V++ SDVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 642 GPRDGLVHISELTQGRVAKTSDVVQQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADI 699
>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|187470950|sp|A4XL64.1|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 701
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 434/699 (62%), Gaps = 12/699 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTV 114
+E+ + E+ R ++ E GK A ANGAV+ +T VL T +S K +F PLTV
Sbjct: 1 MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DY+E+ ++ G IP +++REG P E+ +L R+IDRPIRPLFP FYH+V V+A+VLS D
Sbjct: 61 DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
PD++A +S AL +SDIP+ GP G + +G + G+ ++NPT E +S L+LV +
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T++K +MI+ A+EI E + + A E K +E + ++ GK K +Y+ ++ E+
Sbjct: 181 TKDKVMMIEAGAQEIPEDIMLEAIMTAQEEIKKIVEFIEGIVKEVGKPKMQYEKRVVPEE 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
+KV LA P K ER + LD++ ++V KA E E E++L ++ A+
Sbjct: 241 IKQKVRELAYEKAYQYVQIPD--KIERDKKLDELKEEVLKAFEGET-EDTLLLVDDALYN 297
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K ++RK I EG R DGR+ DE+RP+Y E G LP HGS+LF RG TQVL TLG
Sbjct: 298 LEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTK 357
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
E Q L+ L KR+M HY+FPP+ E G RRE+GHG LAE+AL V+P E+
Sbjct: 358 GEMQFLDGLEEEEAKRYMHHYNFPPYSTGESKPVRGPGRREIGHGALAERALEPVIPSED 417
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+R+ SEV+ S+GSTS A+VCG ++ALMDAG+P++ VAG+S+GL+++ D S
Sbjct: 418 EFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGS---- 473
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ LTDI G+ED GDMDFK+AGTR G+TAIQLDIK G+ +II + L A + RL+
Sbjct: 474 --FITLTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLK 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
ILD M+ I PR++ +P++ D + +R +IGP G + KI +T +I + D
Sbjct: 532 ILDFMQTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAKTNVKIDIEPD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V A + + + ++ IGREIEVG + G VT YGAFVE G++GL+H+
Sbjct: 592 GRIFVAAPDDISGNRAISMIEG-IGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+L ++ + V +VV VG + ++ IG D G I LS K
Sbjct: 651 SQLDNKKLKSVDEVVKVGDLVLVKVIGIDRLGRIALSRK 689
>gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
SL003B-26A1]
gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
SL003B-26A1]
Length = 708
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 440/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + + E E G R + LETGK+AR A+GAV+ ETKVL+TV S+K +DF PLT
Sbjct: 1 MFDIHRVEVEWGGRPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E E L R+IDRPIRPLF G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + PDI+A A+SAAL LS +P+ GP+G R+G I G++++NP +D++ S L+L+ A
Sbjct: 121 DMENAPDILALVASSAALTLSGVPFMGPVGGARVGYINGEYVLNPLIDDMPESSLDLIVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E + + H ++ I+LAE A K+ + L S
Sbjct: 181 GTGDAVLMVESEAKELPEDVMLGAVMFGHSGFQTVIDAIIKLAETAAKEPRGLNLPDHS- 239
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES--LQVLPKA 351
++ ++A ++A +T K ER A+D V +A+ + + V+
Sbjct: 240 ALFARIKDIAAEDLKAAYT--ITGKTERRNAVDAAKTKVVEAVITNAGDAAPAATVVGDL 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ ++R II G R+DGR L VRPI E G LP HGS+LF+RG+TQ L TL
Sbjct: 298 FKKLEAEIVRGAIIETGHRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q +++L G FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQFVDALEGTYKAHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E D
Sbjct: 418 AKHEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ LE A +G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTAEGITSLQMDIKIQGITEEIMKVALEQAREG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M + I+ R + ++PR+ +K D +R +IG G + R+I E+TG ++++
Sbjct: 531 RVHILGEMSKAITEARPELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + ++ + ++ I E EVG IY+G V E+GAFV F G + GL
Sbjct: 591 EDDGTVKIASADGKAIKAAINWINS-IAAEPEVGMIYEGTVVKCVEFGAFVNFFGAKDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ V++V+DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLAPRKVAKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
ATCC 11170]
gi|386351881|ref|YP_006050129.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
F11]
gi|123766875|sp|Q2RMR6.1|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
gi|346720317|gb|AEO50332.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
F11]
Length = 708
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/710 (41%), Positives = 438/710 (61%), Gaps = 14/710 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
+ F++E E G R + LETG+IAR A+GAV+ + +T VL T +K S DF PLTV
Sbjct: 3 LFNVFRKEIEWGGRKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKTKSKFDFFPLTV 62
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK FA G IP + +REG P E+E LV R+IDRPIRPLF G+ +E Q++ +VL D
Sbjct: 63 NYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCHD 122
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ +PDI+A SAAL LS +P+ GPIG R+G I G F++NPT D+++ S L+LV A
Sbjct: 123 LENNPDIVAIVGASAALTLSGLPFLGPIGAARVGLIDGAFVLNPTRDQMADSVLDLVVAG 182
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ-KKEYKLSMISE 293
TRE LM++ +A E+SE+ + + H ++ I LAE+ ++ + + +E
Sbjct: 183 TREGVLMVESEAHELSEQQMLDAVMFGHEGYQPVIDAIIALAEQCAREPRAIEPPAPEAE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
KV + EA + + + K R + +D + V A + + +L + A
Sbjct: 243 AVAAKVREVGEAGLRDAYKEA--DKMVRHDKVDAVRDAVTAAFAGD--DAALALAGAAFK 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K ++R I+ G+R+DGR VRPI G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 DLEKDIVRGSILDTGLRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ ++P +
Sbjct: 359 GQDEQIIDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMMPAK 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+ FPYTVRV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E +
Sbjct: 419 DAFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKNAVAGIAMGLIKEDER---- 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK I +I+ L A GR+
Sbjct: 475 ---FAVLSDILGDEDHLGDMDFKVAGTANGITSLQMDIKITSITKEIMNVALNQAKDGRI 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + + R+ +PR+ T+K +R +IG G + R+I E TG +I +
Sbjct: 532 HILGEMTKALGNARSDVSDFAPRITTIKVPPQKVREVIGSGGKVIREITEVTGTKIDIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + ++ ++ + I+ E E+G +Y G V + ++GAFV F G + GL+H
Sbjct: 592 DGTIKIASADAEATQRAVDWIKGIVA-EPEIGVVYTGKVVKIMDFGAFVNFLGTRDGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+SELS + V +V DVV+VG Q+ ++C+G D RG IKLS+K V AD+
Sbjct: 651 ISELSQDRVKKVGDVVNVGDQVKVKCVGFDDRGKIKLSMKQVDQVTGADL 700
>gi|395789261|ref|ZP_10468784.1| polyribonucleotide nucleotidyltransferase [Bartonella taylorii
8TBB]
gi|395430308|gb|EJF96352.1| polyribonucleotide nucleotidyltransferase [Bartonella taylorii
8TBB]
Length = 733
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/718 (41%), Positives = 439/718 (61%), Gaps = 22/718 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKLYAVGKIPGGYLKRESRPTESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQV 347
+ + LE +AE +I +T K ER +D + +V E +E+ S
Sbjct: 241 LEKAMLE----MAEQNIRKAYT--ITDKQERYAVIDALKTEVINKFMPETEEDCKFSADQ 294
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++ +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 295 IATVFKKLQAKIVRGNILDTQKRIDGRDLSTVRPIQSEVSILPRTHGSALFTRGETQAIV 354
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +AL
Sbjct: 355 VATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALH 414
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 415 PMLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE- 473
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE
Sbjct: 474 ----GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQ 527
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL+ M + ++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 528 AKGGRIHILNEMAKALTNARAELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGA 587
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ + + + +E + I+ E EVG IY+G V E+GAFV F G
Sbjct: 588 KINIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTAEFGAFVNFFGS 646
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
+ GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V + ++ G
Sbjct: 647 RDGLVHISQLASERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGEEIAG 704
>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
NGR234]
gi|254782732|sp|C3MC71.1|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
NGR234]
Length = 717
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 434/705 (61%), Gaps = 16/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ ET K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PD+++ A SAAL LS IP+ GPIG R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+E LM++ +A+E+ E + + ++ I+LAE A K+ +E+
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQQGFQPVIDAIIKLAEVAAKEPREFDPE--DH 238
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLPK 350
LE + LA A E K R A+D + VK+ E E + + +
Sbjct: 239 SALEN-AMLAIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHTAEEIGS 297
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + T
Sbjct: 298 VFKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVAT 357
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G +RFMLHY+FPPF + E G+ RRE+GHG LA +A+ +L
Sbjct: 358 LGTGEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPML 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E +
Sbjct: 418 PEAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDE-- 475
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A
Sbjct: 476 -----RFAVLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGIALNQAKG 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + IS R Q +PR+ + D +R +IG G + R+I E+TG +I+
Sbjct: 531 GRLHILGEMAKAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKIN 590
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + G
Sbjct: 591 IEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 LVHISQLASERVAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|420591446|ref|ZP_15084878.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-09]
gi|391457028|gb|EIR16005.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-09]
Length = 684
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/683 (42%), Positives = 433/683 (63%), Gaps = 13/683 (1%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K + F PLTV+YQE+ +A G IP ++ RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE+ +
Sbjct: 122 IPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPS 315
+ H + +E L +AGK K +++ ++E +V+ LAEA + +
Sbjct: 182 GAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYR--I 239
Query: 316 YSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQ 375
K ER +D I DV +AL + D + + +V K V+R R++ R+DGR+
Sbjct: 240 TEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRSRVLRGEPRIDGRE 299
Query: 376 LDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHY 435
D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G T F+LHY
Sbjct: 300 KDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHY 359
Query: 436 SFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSM 495
+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+RV SE+ S+GS+SM
Sbjct: 360 NFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSM 419
Query: 496 ATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDF 555
A+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+DILG EDHLGDMDF
Sbjct: 420 ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVLSDILGDEDHLGDMDF 472
Query: 556 KIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSP 615
K+AG+R GVTA+Q+DIK GI +I+ L A RL IL ME+ IS PR +P
Sbjct: 473 KVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISEFAP 532
Query: 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVD 674
R+ T+K + + ++ +IG G++ R + +ETG I + DGT+ + A + + + +++
Sbjct: 533 RIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKHAIRRIE 592
Query: 675 FIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQL 734
I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +GQ +
Sbjct: 593 EITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQDV 651
Query: 735 SLRCIGQDVRGNIKLSLK-AVSP 756
++ + D +G I+LS+K A +P
Sbjct: 652 PVKVMEVDRQGRIRLSIKEATTP 674
>gi|405377158|ref|ZP_11031104.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF142]
gi|397326357|gb|EJJ30676.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF142]
Length = 716
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 436/704 (61%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E + + H L+ I+LAE A K+ ++++ S
Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + LAE + + K +R A+D + VK EE + + +
Sbjct: 241 LESEML-GLAEGELREAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEARYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 SAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RAHILGEMAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628900|ref|ZP_17604649.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268445|gb|EJR74493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
Length = 712
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADVDTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|384135122|ref|YP_005517836.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289207|gb|AEJ43317.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 735
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/697 (42%), Positives = 434/697 (62%), Gaps = 14/697 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
+ EFE+ R LETGK+AR A AV + ET VL+TVT+SK DF PLTV+Y+E+
Sbjct: 4 RHEFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEER 63
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E +L R+IDRPIRPLFP GF ++VQ++ VLS D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAP 123
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
+I A TSA+L +SDIP+ GPIG + +G + GQF++NPT+++ SDL+LV A T++
Sbjct: 124 EIAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAI 183
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIR-LAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A ++ E+ + + H + ++ + +I A K G +K+E +L + +
Sbjct: 184 VMVEAGANQVPEEIVLEAILYGH-QVIQTICDEINAFAAKVGVKKREVELHKVDPELEAA 242
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V A + +P K R EAL + +V + +E E+ + + + T+ K
Sbjct: 243 VRAYATEKVSVAVRNP--DKLAREEALANLNAEVLEHFKETFPEKEADI-AEVMHTILKE 299
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I+ EG+R DGR+LDE+RPI CE G LP HGS+LF+RG TQ L TLG+ + Q
Sbjct: 300 RVREAILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQ 359
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ L + R+M HY+FPPF + E +RR++GHG L E+AL V+P +FPY
Sbjct: 360 LLDGLEIEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPY 419
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
+RV SE++ S+GSTS A++CG +MALMDAG+P++ VAG+++GLV E D
Sbjct: 420 AIRVVSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGD-------QVA 472
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DI G+EDHLGDMDFK+AGT GVTA+Q+DIK +GI I+ L+ A +GR+ IL
Sbjct: 473 ILSDIQGIEDHLGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSK 532
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M IS PR + +PR+ T+K D +R +IGP G + KI EETG +I + DG +
Sbjct: 533 MMEAISEPRADLSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVY 592
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + + E V+ I+ R++E+G Y G VT V++YGAFVE G++GL+H+S+L
Sbjct: 593 IHSTDAEQANRAREMVENIV-RDVEIGATYTGKVTRVEKYGAFVEILPGKEGLVHISQLD 651
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V++V DV VG L+++ D +G I LS K V
Sbjct: 652 LNRVAKVEDVCQVGDTLTVKVTEIDNQGRINLSRKEV 688
>gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase [Bartonella quintana str. Toulouse]
gi|81647260|sp|Q6G0P7.1|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str.
Toulouse]
Length = 733
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/720 (41%), Positives = 441/720 (61%), Gaps = 26/720 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKFYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQY 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G Q+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H L+ I+LAE A K +++
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDF------- 233
Query: 294 QTLEKVSNLAEAHIEAVFTD--PSYS---KFERGEALDKIGQDVKKALEEECDEE---SL 345
E +S+L A +E V D +Y+ K ER A+D + ++ E +E S
Sbjct: 234 -IPEDLSDLETAMLEMVEQDIRKAYTITDKQERSTAIDVLKTEIINKFMSETEENCKFSA 292
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 293 DQIATVFKQLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL +AG+++GL+
Sbjct: 413 IHPMLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + IL+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAILSDILGDEDHLGDMDFKVAGTNNGITALQMDIKIDGITEEIMKIAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQARDGRIHILNEMAKALTSARDELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQT 585
Query: 646 GGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ D GT+ + + + +E + I+ E EVGGIY+G V E+GAFV F
Sbjct: 586 GAKINIEDNGTIKIASADAKTIEAAKRWIHSIVD-EPEVGGIYQGTVVKTAEFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
G + GL+H+S+L+ E V++ ++VV G ++ ++ +G D RG ++LS+K V + ++ G
Sbjct: 645 GSRDGLVHISQLTTERVTKTTNVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEITG 704
>gi|257096719|sp|B3PXD7.2|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 712
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/704 (41%), Positives = 437/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+ E + + H L+ I+LAE A K+ ++++ S
Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + LAEA + + K +R A+D + VK EE + + + +
Sbjct: 241 LESEML-GLAEAELREAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 SAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RTHILGEMAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|399055584|ref|ZP_10743279.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. CF112]
gi|398046793|gb|EJL39377.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. CF112]
Length = 715
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 288/698 (41%), Positives = 443/698 (63%), Gaps = 14/698 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
+FE+ R +TLE GK+A+ ANG+V++ +T +LS VT SK DF PLTV+Y+E+ +
Sbjct: 9 DFELAGRKLTLEFGKMAKQANGSVLVRYGDTAILSAVTVSKEPKALDFFPLTVNYEERLY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+IDRPIRPLF GF ++VQ++ +VLS D P+I
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNDVQIVNTVLSVDQDCSPEI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +S+IP+ GPI + +GRI G+FI+NPT+++ SD++LV A T + M
Sbjct: 129 AAMIGTSAALCVSEIPFEGPIAGVIVGRIDGEFIINPTVEQAEKSDIHLVVAGTHKAINM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A ++ E + + H + +E Q ++ + GK+K E L + + + V
Sbjct: 189 VEAAANQVPESVMLEAIMAGHEVIKQLVEFQNQIVAEIGKEKMEVILHEVDPEIDQAVRE 248
Query: 302 LAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKK---ALEEECDEESLQVLPKAVDTVRK 357
AEA + EAV + +++ +A+D I ++ K+ A + E E +++ + + + K
Sbjct: 249 FAEARLKEAVRIEEKQARY---DAIDNIKEETKEHFAAKDPEAYPEQEKMISEVLGNIVK 305
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+R+ I E VR DGR L+E+RP+ E+G L HGS++F+RG TQ L TLGA +
Sbjct: 306 DEVRRLITEEKVRPDGRALNEIRPLSSETGILSRTHGSAMFTRGQTQALSVCTLGALGDV 365
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q L+ L +KRFM HY+FPP+ + E RRE+GHG L E+A+ ++P E++FP
Sbjct: 366 QILDGLGLEESKRFMHHYNFPPYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEHEFP 425
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SEV+ S+GSTS A++C +ALMDAG+P++ VAG+++GL+ D + +
Sbjct: 426 YTIRLVSEVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEQS-----F 480
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
ILTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK +GI +I+ + LE A +GRL IL
Sbjct: 481 SILTDIQGMEDHLGDMDFKVAGTEAGVTAIQMDIKISGINREILQQALEQAREGRLHILK 540
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
HM IS PR + +P++ T+ + D +R +IGP G + KI EETG +I + DG +
Sbjct: 541 HMMSTISEPRKELSPYAPKILTMTINPDKIRDVIGPQGRVINKIIEETGVKIDIEQDGRV 600
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + N + + ++ ++ RE+ VG IY G V V++YGAF+E G++GL H+S+L
Sbjct: 601 FIASINHEANMRAKQIIEDLV-REVAVGQIYLGTVKRVEKYGAFIELFAGKEGLCHISQL 659
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ E V++ DVV++G ++ ++ D +G I LS KAV
Sbjct: 660 AEERVAKTEDVVAIGDKVQVKVTEIDDQGRINLSRKAV 697
>gi|335032810|ref|ZP_08526182.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium sp. ATCC
31749]
gi|333795486|gb|EGL66811.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium sp. ATCC
31749]
Length = 713
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 435/702 (61%), Gaps = 25/702 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ A SAAL LS IP+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSMISEQTLE 297
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S + + L
Sbjct: 188 MVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEML- 246
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
LAE + + K R A+D + VK E E P+ + V K
Sbjct: 247 ---GLAETELRTAYK--ITEKAARYAAVDAVKAKVKAHFLPEEGEAKYS--PEEIGAVFK 299
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 HLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 360 GEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTA 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE
Sbjct: 420 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRK 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 533 HILGEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIED 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H
Sbjct: 593 DGTVKIASASGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 652 ISQLASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|417674073|ref|ZP_12323510.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
155-74]
gi|419366932|ref|ZP_13908084.1| pnp [Escherichia coli DEC13E]
gi|419382574|ref|ZP_13923518.1| pnp [Escherichia coli DEC14C]
gi|424092186|ref|ZP_17828116.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1996]
gi|424136317|ref|ZP_17868765.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA10]
gi|425099842|ref|ZP_18502571.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4870]
gi|425176049|ref|ZP_18574165.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA504]
gi|425182091|ref|ZP_18579782.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1999]
gi|425201599|ref|ZP_18597803.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE037]
gi|425207984|ref|ZP_18603777.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK2001]
gi|425344129|ref|ZP_18731016.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1848]
gi|425374735|ref|ZP_18759373.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1864]
gi|425424040|ref|ZP_18805198.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1288]
gi|429069095|ref|ZP_19132547.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0672]
gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
155-74]
gi|378210466|gb|EHX70820.1| pnp [Escherichia coli DEC13E]
gi|378226136|gb|EHX86329.1| pnp [Escherichia coli DEC14C]
gi|390638952|gb|EIN18440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1996]
gi|390693916|gb|EIN68529.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA10]
gi|408089599|gb|EKH22903.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA504]
gi|408095806|gb|EKH28770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1999]
gi|408113501|gb|EKH45091.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE037]
gi|408119571|gb|EKH50631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK2001]
gi|408257235|gb|EKI78558.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1848]
gi|408289641|gb|EKJ08397.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1864]
gi|408341772|gb|EKJ56210.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1288]
gi|408547204|gb|EKK24602.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4870]
gi|427317269|gb|EKW79175.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0672]
Length = 690
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/683 (42%), Positives = 435/683 (63%), Gaps = 22/683 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP ++ RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ ++E +V+ LAEA + + TD
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVR 370
K ER +D I + L +E DE L + A++ K V+R R++A R
Sbjct: 242 ----KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSRVLAGEPR 294
Query: 371 VDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKR 430
+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L+G T
Sbjct: 295 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 354
Query: 431 FMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASD 490
F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+ S+
Sbjct: 355 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 414
Query: 491 GSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHL 550
GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D +Y +L+DILG EDHL
Sbjct: 415 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDILGDEDHL 467
Query: 551 GDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQD 610
GDMDFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 468 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 527
Query: 611 DRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKV 669
+PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A + +
Sbjct: 528 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 587
Query: 670 LEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVS 729
+ +++ I EIEVG +Y G VT + ++GAFV GG++GL+H+S+++ + V +V+D +
Sbjct: 588 IRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 646
Query: 730 VGQQLSLRCIGQDVRGNIKLSLK 752
+GQ++ ++ + D +G I+LS+K
Sbjct: 647 MGQEVPVKVLEVDRQGRIRLSIK 669
>gi|398828034|ref|ZP_10586236.1| polyribonucleotide nucleotidyltransferase [Phyllobacterium sp.
YR531]
gi|398218752|gb|EJN05254.1| polyribonucleotide nucleotidyltransferase [Phyllobacterium sp.
YR531]
Length = 713
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 299/702 (42%), Positives = 438/702 (62%), Gaps = 20/702 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +V+ D + +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFADGYKNDTQVVLTVIQHDLENN 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ SAAL LS +P+ GPIG R+G I G++ +NPT+DE+ S L+LV A T +
Sbjct: 126 PDIISLIGASAALTLSGVPFMGPIGGARVGYINGEYRLNPTVDEMPESSLDLVVAGTGDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E++E + + H ++ I+LAE A K+ ++++ +S
Sbjct: 186 VLMVESEAKELAEDVMLGAVMFGHRSFQPVIDAIIKLAEVAAKEPRDFQADDVSAAE-AA 244
Query: 299 VSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKAVD 353
V +AE + A + TD K +R A+D VK E EE S + +
Sbjct: 245 VLKVAETDLRAAYKITD----KQDRYNAVDAAKAKVKAHFFPEGVEEPEFSAEEIATVFK 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+V+ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 301 SVQAKIVRWNILDTGSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++SL G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ VLP +
Sbjct: 361 GEDEQYVDSLTGMYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPVLPAK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E GE
Sbjct: 421 EQFPYTLRTVSEITESNGSSSMATVCGTSLALMDAGVPLLRPVAGIAMGLILE-----GE 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ L A GRL
Sbjct: 476 --KFAVLSDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALAQAKDGRL 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + I+ R++ +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 534 HILGEMAKAITEGRSELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIED 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H
Sbjct: 594 DGTVKIASSSAKEIEAARKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+L+ + V++ SDVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 653 ISQLASDRVAKTSDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
gi|123355467|sp|Q127W8.1|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
Length = 707
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 288/707 (40%), Positives = 443/707 (62%), Gaps = 14/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPL 112
+ + F+ G +T+ETG++AR A+GAVV+ MD T VL+TV + K D+ +DF PL
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVA-KTDAKPGQDFFPL 61
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TVDY EK +A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EVQV+ VLS
Sbjct: 62 TVDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLS 121
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
+ + + DI A A+SAAL +S IP+ GPIG R+ + GQ+++NP +L S ++LV
Sbjct: 122 LNPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDLVV 181
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T LM++ +A+++SE+ + + H +A + L AGK +++
Sbjct: 182 AGTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAKD 241
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
E + KV+ LA A ++A + SK R +A DV AL+ + + +
Sbjct: 242 EPLIAKVNELAGAKLQAAYQ--IRSKQARTQACRVAYADVMAALKADGVAFDGVTVEGML 299
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ +++R +I+A R+DGR VR I + LP HGS+LF+RG+TQ L TLG
Sbjct: 300 FDIEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQR+++L G RFMLHY+ PPF E G+ RRE+GHG LA++AL+AVLP
Sbjct: 360 TERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPT 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ +FPYT+RV SE+ S+GS+SMA+VCGG ++LMDAG+P++ HVAG+++GL+ E +
Sbjct: 420 KEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEEN---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R
Sbjct: 476 ---RFAVLTDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEAR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
+ IL M+ + + + +PRL +K + + +R +IG GA+ R + EETG +I++
Sbjct: 533 MHILGKMQEAMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIE 592
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+T+ + + + ++ ++ I E+E+G +Y+G +T + ++GA V G+ GLL
Sbjct: 593 EDGTITIASNDSAKADEAKRRIAEITA-EVEIGKVYEGAITKILDFGALVNLLPGKDGLL 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
H+S+++HE V +V+D +S GQ + ++ + D +G +KLS+KA+ RP
Sbjct: 652 HISQIAHERVEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLDRP 698
>gi|349701063|ref|ZP_08902692.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
europaeus LMG 18494]
Length = 711
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 304/719 (42%), Positives = 441/719 (61%), Gaps = 33/719 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ F++E E G R + LETGKIAR A+GAVV+ +T VL T +K SV+ DF P
Sbjct: 1 MFNYFRKEIEWGGRPLVLETGKIARQADGAVVITYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK +A G IP + +REG P E E+L R+IDRPIRPLFP F +EVQV+A+VL
Sbjct: 59 LTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP ++A SAAL LS IP+ GP+G R+G G++++NPT+ +L S+L+LV
Sbjct: 119 SHDMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T E LM++ +A E+SE+ + + H ++ I LAE A K E
Sbjct: 179 VAGTSEGVLMVESEAVELSEEVMLGAVTFGHEAFQPVIDAIIDLAESAAKAPWELAEPTA 238
Query: 292 SEQTL-EKVSNLAEAHIEAVFTDPS----YSKFE--RGEALDKIGQDVKKALEEECDEES 344
E L +KV + A I + + + Y K R L KIG E D ++
Sbjct: 239 EEIKLRKKVDKVGRALIADAYKERAKQVRYKKVAAARDAILAKIG---------EADADA 289
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
+ + K ++ V+R ++ G R+DGR L+ +RPI E G LP HGS+LF+RG+TQ
Sbjct: 290 AKPMIKDLEA---DVVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQ 346
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TLG + Q +++L G FMLHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 347 ALVVATLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWR 406
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP ++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+
Sbjct: 407 AIHPLLPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLI 466
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E + D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+
Sbjct: 467 KEDE-------DFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIA 519
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L A +GRL IL M + ++ R+ ++P++ T+ + +R +IG G + R+I E
Sbjct: 520 LGQARQGRLHILGEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEY 579
Query: 645 TGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
+G +I ++ DGT+ + A + EK +E++ I+ E EVG IY G V ++GAFV F
Sbjct: 580 SGAKIDINDDGTIMIAASSDDQAEKAIERIRGIVA-EPEVGHIYNGKVVKTADFGAFVNF 638
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ VS+ +DVV G ++ ++ +G D RG +KLS++ V AD+
Sbjct: 639 LGPRDGLVHISELAQGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQDTGADI 697
>gi|338707657|ref|YP_004661858.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294461|gb|AEI37568.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 754
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 302/707 (42%), Positives = 451/707 (63%), Gaps = 16/707 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
++E + G + +TLETG++AR A+GAV+ + ET VL VT++K +DF PLTV YQE
Sbjct: 6 RQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K A G IP + +RE ERE LV R+IDRPIRPLFP GFY+E ++A V+S DG+ +
Sbjct: 66 KYSAAGRIPGGFFKRERGASERETLVSRLIDRPIRPLFPDGFYNETLLIAQVMSYDGENE 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL LS +P+ GPIG R+G G++I+NPT+ +L SDL+LV TR+
Sbjct: 126 PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEYILNPTLAQLENSDLDLVVGATRDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE- 297
+M++ +A+E+SE+ + + AH ++ I LAE+A K+ ++LS + L
Sbjct: 186 VMMVESEAKELSEEIMLDAVSFAHKSLQPVIKAIINLAEQAAKEP--WELSSYDDTALAA 243
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
KV L + ++ + K ER EA+ K + +A + E L++ K +
Sbjct: 244 KVEELCKDSLDKAYR--LTKKSERVEAISKAKAVLDEAFPDADASEKLRI-QKLAKKLEA 300
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+++R I+ EG R+DGR L VRPI + G LP HGS+LF+RG+TQ L + TLG
Sbjct: 301 KIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAE 360
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L G +RFMLHY+FPP+ + EVG+ RRE+GHG LA +AL VLP + DFP
Sbjct: 361 QMIDGLNGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFP 420
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV S++ S+GS+SMATVCGG +ALMDAG+PL+ V+G+++GL+ E D +
Sbjct: 421 YTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLKRPVSGIAMGLILEKD-------GF 473
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DI+G EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR IL
Sbjct: 474 AILSDIMGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITEEIMGKALEQAKAGRAHILG 533
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M + + R++ +PR+ T+ D +R +IG G + R+I TG ++ + DGT+
Sbjct: 534 EMSKALGEVRSELSNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTV 593
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + + + +E + II E EVG IY G V ++ ++GAFV F GG+ GL+HVSE+
Sbjct: 594 RLSSSDPAQIEAARNWITGII-EEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEI 652
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+E V++VSDV++ GQ++ ++ + D RG ++LS++ V A+++
Sbjct: 653 KNERVNKVSDVLAEGQEVKVKVLEIDNRGKVRLSMRVVDQETGAELE 699
>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
Length = 715
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 435/702 (61%), Gaps = 25/702 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ A SAAL LS IP+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSMISEQTLE 297
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S + + L
Sbjct: 188 MVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEML- 246
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
LAE + + K R A+D + VK E E P+ + V K
Sbjct: 247 ---GLAETELRTAYK--ITEKAARYAAVDAVKAKVKAHFLPEEGEAKYS--PEEIGAVFK 299
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 HLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 360 GEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTA 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE
Sbjct: 420 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRK 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 533 HILGEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIED 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H
Sbjct: 593 DGTVKIASASGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 652 ISQLASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
9799]
gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
9799]
Length = 698
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/690 (42%), Positives = 422/690 (61%), Gaps = 10/690 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F G +TLETG IAR A+ AV+ M +T VL TV K +DF PLTV+YQEK +
Sbjct: 8 FPYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PD+
Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVEPAVSPDV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A TSAAL LS IP+ GPIG R+G G++++NP+++EL S L+LV A T LM
Sbjct: 128 VAMIGTSAALALSGIPFNGPIGCARVGFRDGEYLLNPSVEELKTSKLDLVVAGTESAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H ++ L +AGK ++ + +E KV+
Sbjct: 188 VESEAEVLSEEIMLGAVMFGHQAQQTVIQAINELKAEAGKPAWDWSAPVKNEALAAKVAE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA+A + + K R EA++ + K A+ E E+ Q L + ++ K V+R
Sbjct: 248 LAQAGLGDAYR--ITEKVARLEAVNAVKAQAKAAILAENPEQDEQELSNLLGSLEKSVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR +R + G LP HGS+LF+RG+TQ L TLG + Q ++
Sbjct: 306 SRIIAGEPRIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERDGQIID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L+G T RFMLHY+FPPFC+ E G RRE+GHG LA++ + AV+P +FPYTVR
Sbjct: 366 ELIGERTDRFMLHYNFPPFCVGETGFIGSPKRREIGHGKLAKRGVQAVMPTAEEFPYTVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGD-------NFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A + R+ IL M+
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITQEIMQIALKQAFEARVHILGVMDE 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAK 661
+ APR + ++PR+ T+K D +R +IG GA R + EETG I + D VA
Sbjct: 539 ALPAPRAELSMHAPRITTIKIHPDKIREVIGKGGATIRALTEETGTTIEIEDDGTVKVAS 598
Query: 662 NRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV 721
+ I ++E G IYKG V + ++GAFV G+ GL+H+S++ E V
Sbjct: 599 TDGAAAAEAIRRIEEITSDVEEGRIYKGKVVRIVDFGAFVNILPGKDGLVHISQICEERV 658
Query: 722 SRVSDVVSVGQQLSLRCIGQDVRGNIKLSL 751
+ VSD +++GQ++ ++ I D +G I+LS+
Sbjct: 659 NNVSDHLTMGQEVDVKVIEVDRQGRIRLSM 688
>gi|418407620|ref|ZP_12980937.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens 5A]
gi|358005606|gb|EHJ97931.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens 5A]
Length = 715
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/702 (42%), Positives = 435/702 (61%), Gaps = 25/702 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ A SAAL LS IP+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSMISEQTLE 297
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S + + L
Sbjct: 188 MVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEML- 246
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
LAE + + K R A+D + VK E E P+ + V K
Sbjct: 247 ---GLAETELRTAYK--ITEKAARYAAVDAVKAKVKAHFLPEEGEAKYS--PEEIGAVFK 299
Query: 358 ----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 HLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 360 GEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTA 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE
Sbjct: 420 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE 474
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR
Sbjct: 475 --RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRK 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 533 HILGEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIED 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H
Sbjct: 593 DGTVKIASASGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 652 ISQLASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|423488982|ref|ZP_17465664.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
gi|423494707|ref|ZP_17471351.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|423498501|ref|ZP_17475118.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|423661354|ref|ZP_17636523.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|401150800|gb|EJQ58252.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|401160550|gb|EJQ67928.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|401301395|gb|EJS06984.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|402432230|gb|EJV64289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
Length = 717
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
Length = 713
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 442/694 (63%), Gaps = 14/694 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLTV+YQE+
Sbjct: 14 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 73
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + + PD
Sbjct: 74 YAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 133
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 134 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 193
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E LA + GK + E+ ++ ++VS
Sbjct: 194 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQQRVS 253
Query: 301 NLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + EA +++ + +D+I + V L E + + + K V
Sbjct: 254 EMAEARLGEAYHITEKQARYAK---VDEIKESVIADLLAEDASLDAGEISDILGALEKSV 310
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ
Sbjct: 311 VRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQN 370
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P + +FPYT
Sbjct: 371 IDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPYT 430
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 431 VRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQD-------NFVV 483
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL M
Sbjct: 484 LSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVM 543
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I+APR +PR+ T+K + + ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 544 EQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 603
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++
Sbjct: 604 AATDGDKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 662
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +V+D + +GQ+++++ + D +G ++LS+K
Sbjct: 663 KRVEKVTDYLQMGQEVAVKVLEVDRQGRVRLSIK 696
>gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
DFL-43]
gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
DFL-43]
Length = 706
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 299/715 (41%), Positives = 445/715 (62%), Gaps = 16/715 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E G R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHKVEIEWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E L R+IDRP+RPLFP G+ ++ Q++ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIITVMQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A SAAL +S IP+ GPI R+G I G++++NP +DE+ SDL+LV A
Sbjct: 121 DLENNPDILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPESDLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H ++ I+LAE A K+ +++ S+
Sbjct: 181 GTNDAVLMVESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAAAKEPRDFSAPDHSD 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPK 350
E +S + EA + + + K R A+D++ VK+ EE + +V+
Sbjct: 241 LEAEMLS-MCEADLRKAYENTD--KAARYAAIDEVKAKVKEHFAPAEGEEPRFTSEVIGA 297
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+++ +V+R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ + T
Sbjct: 298 VFKSLQAKVVRGAILETKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVAT 357
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G FMLHY+FPP+ + E G+ RRE+GHG LA +A+ ++
Sbjct: 358 LGTGEDEQYVDSLTGTKKATFMLHYNFPPYSVGETGRTGSPGRREIGHGKLAWRAINPMM 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 418 PSAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE---- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE D+ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A
Sbjct: 474 -GE--DFAVLSDILGDEDHLGDMDFKVAGTADGITALQMDIKIDGITEEIMKIALSQAEG 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M ++ R Q +PR+ + D +R +IG G + R+I E+TG +I+
Sbjct: 531 GRLHILKEMGNALTESRGQLGEFAPRIEVMNIPVDKIRDVIGTGGKIIREIVEKTGAKIN 590
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + +E + + I+ E EVG IY+G V V ++GAFV F G + G
Sbjct: 591 IDDDGTIKIASSSGKEIEAAKKWIHSIVA-EPEVGVIYEGTVVKVADFGAFVNFFGPKDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
L+H+S+L+ E V++ SDVV GQ++ ++ +G D RG ++LS+K V +V G
Sbjct: 650 LVHISQLAAERVAKTSDVVKEGQKVWVKLLGFDERGKVRLSMKVVDQETGKEVTG 704
>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
4Rx13]
gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
4Rx13]
Length = 686
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/698 (41%), Positives = 438/698 (62%), Gaps = 26/698 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K + F PLTV+YQE+ +A G IP ++ RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPS 315
+ H + +E L +AGK K +++ I+E +V+ LAE+ + +
Sbjct: 182 GAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYH--I 239
Query: 316 YSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVD 372
K ER +D I V +AL +E D +Q + + +V K V+R R++ R+D
Sbjct: 240 TEKQERYAQVDAIKSSVVEALLAQDESLDASEIQDI---LGSVEKNVVRSRVLRGEPRID 296
Query: 373 GRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFM 432
GR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ L+ L+G T F+
Sbjct: 297 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFL 356
Query: 433 LHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGS 492
HY+FPP+ + E G RRE+GHG LA++ +LA++P DFPYTVRV SE+ S+GS
Sbjct: 357 FHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGS 416
Query: 493 TSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGD 552
+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+DILG EDHLGD
Sbjct: 417 SSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NFVVLSDILGDEDHLGD 469
Query: 553 MDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDR 612
MDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME+ IS PR +
Sbjct: 470 MDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQ 529
Query: 613 NSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLE 671
+PR+ T++ + D ++ +IG G++ R + EETG I + DGT+ + A + + +
Sbjct: 530 FAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIR 589
Query: 672 KVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVG 731
+++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +G
Sbjct: 590 RIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 648
Query: 732 QQLSLRCIGQDVRGNIKLSLK--------AVSPRPEAD 761
Q++ ++ + D +G ++LS+K + +P PEA+
Sbjct: 649 QEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAPAPEAE 686
>gi|395791955|ref|ZP_10471394.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis Pm136co]
gi|423714006|ref|ZP_17688265.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395421153|gb|EJF87409.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395432874|gb|EJF98848.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis Pm136co]
Length = 711
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 297/708 (41%), Positives = 436/708 (61%), Gaps = 22/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKTPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E LV R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPTENETLVSRLIDRPIRPLFADGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A E+ E + + H L+ I+LAE A K +++ LS
Sbjct: 181 GTESAVLMVESEAHELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQV 347
+ + LE +AE I +T K ER A+D + +V E DE+ S
Sbjct: 241 LEKAMLE----MAEQDIRKAYT--ITDKQERYAAIDALKTEVINKFMPEEDEDCKFSTDQ 294
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++ +++R I+ R+DGR L VRPI E LP HGS+LF+RG+TQ +
Sbjct: 295 IATVFKQLQAKIVRWNILDTEKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIV 354
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +AL
Sbjct: 355 VATLGTGEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALH 414
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 415 PMLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE- 473
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L+
Sbjct: 474 ----GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALDQ 527
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 528 AKEGRIHILNEMAKALTSARAELSEFSPRIEVMNIPVDKIRDVIGSGGKVIREIVEQTGA 587
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I++ DGT+ + + + +E + I+ E EVG IY+G V E+GAFV F G
Sbjct: 588 KINIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTAEFGAFVNFFGS 646
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K +
Sbjct: 647 RDGLVHISQLASERVTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKII 694
>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
Length = 735
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/703 (41%), Positives = 442/703 (62%), Gaps = 21/703 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQEKQF 121
F IG R + +ETG++A+ A GAV +T VL T T S + DF PLTVDY+E+ +
Sbjct: 30 FPIGGREMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDYEERLY 89
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+IDRPIRPLFP G+ ++V ++A+VLS D PD+
Sbjct: 90 AVGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPDV 149
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A N SAALM+S IP+ GPIG + +GR+ G+FI+NPT+ + +SD++L A T++ +M
Sbjct: 150 TAINGASAALMISGIPFLGPIGAVVVGRVDGKFIINPTIAQAEVSDMHLTVAGTKDAVIM 209
Query: 242 IDVQAREISEKDLEAGLRLAHPEA---VKYLEPQIRLAEKAG--KQKKEYKLSMISEQTL 296
++ A+E+ E+ + + H E V +LE R AG K ++E L ++ E+
Sbjct: 210 VEAGAKEVPEEVILEAISYGHEEIKKIVSFLEDFTRECLDAGVAKPRQEPVLFLLDEEIE 269
Query: 297 EKVSNLAEAHIEAVF---TDPSYSKFERGEALDKIGQDVKKALEEEC---DEESLQVLPK 350
++V A + + + K +R + ++ +++K E+ DE +L+ +
Sbjct: 270 KQVREYAYDKMFDTLKECIEKRFPKKQREDFIENAKEEIKTYFAEKVFPEDEAALKHVAD 329
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
AV+ + K ++RK II + +R+DGR+LDEVRPI C G LP HGS LF+RG TQVL T
Sbjct: 330 AVNKLEKEIMRKFIIQDRIRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQVLTVTT 389
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LGA + Q L+ L +KR+M HY+FPP+ + E G RRE+GHG LAE+AL ++
Sbjct: 390 LGAVGDEQILDGLGVEESKRYMHHYNFPPYSVGEARFMRGPGRREIGHGALAERALEPMI 449
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E++FPYT+R+ SEV+ S+GS+SM +VCG +++LMDAG+P++ V+GV++GL+ E D
Sbjct: 450 PSEDEFPYTIRLVSEVLESNGSSSMGSVCGSTLSLMDAGVPIKRPVSGVAMGLIKEEDA- 508
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK AGI +I+ L A +
Sbjct: 509 ------FAVLTDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGISKEILQVALTQARE 562
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M I PR + +PR+ T D + +R +IGP G +KI +ETG +I
Sbjct: 563 GRMHILSKMLEVIDKPRPEISPYAPRIITFTIDPEKIRNVIGPGGKTIKKIIDETGVKID 622
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DG + + A + + E +D + ++EVG +Y G V + ++GAFVE G++G
Sbjct: 623 IEDDGRVFIAAVDVEAGRRAREIIDKLTA-DVEVGKMYLGRVVKIMDFGAFVEVLPGKEG 681
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
L+H+S+L+ + V +V DVVSVG ++ ++ D +G I LS K
Sbjct: 682 LVHISQLAEQRVGKVEDVVSVGDEIMVKVTKIDEQGRINLSRK 724
>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|387866511|ref|YP_005697980.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
Length = 707
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/694 (42%), Positives = 441/694 (63%), Gaps = 14/694 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + + PD
Sbjct: 68 YAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPTMDEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVAGTDNAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E LA + GK + E+ ++ +V+
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWHAPEVNVALQHRVA 247
Query: 301 NLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + EA +++ + +D+I + V L E D + + + K V
Sbjct: 248 EMAEARLGEAYHITEKQARYAK---VDEIKESVIVDLLAEDDALDAGEISDILGALEKAV 304
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ
Sbjct: 305 VRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQN 364
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P ++ FPYT
Sbjct: 365 IDELTGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYT 424
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NFVV 477
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL M
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVM 537
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I+APR +PR+ T+K + + ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 538 EQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++
Sbjct: 598 AATDGDKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +V+D + +GQ+++++ + D +G ++LS+K
Sbjct: 657 KRVEKVTDYLQMGQEVAVKVLEVDRQGRVRLSIK 690
>gi|423511841|ref|ZP_17488372.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
gi|402450102|gb|EJV81936.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
Length = 722
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
weihenstephanensis KBAB4]
gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|423452892|ref|ZP_17429745.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|423518497|ref|ZP_17494978.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|423598882|ref|ZP_17574882.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|423669381|ref|ZP_17644410.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|423674440|ref|ZP_17649379.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
gi|226702619|sp|A9VT44.1|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
weihenstephanensis KBAB4]
gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|401139451|gb|EJQ47013.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|401160705|gb|EJQ68080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|401237152|gb|EJR43609.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|401298508|gb|EJS04108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|401309991|gb|EJS15324.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
Length = 717
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1]
gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens
CN-32]
gi|386314675|ref|YP_006010840.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
200]
gi|187611297|sp|A4Y9B5.1|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611299|sp|A1RGY0.1|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1]
gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
CN-32]
gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
200]
Length = 699
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 287/700 (41%), Positives = 441/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K ++ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+ ++ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAGTASAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + + +AGK ++ + E + ++
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVINAIAEFKAEAGKPMWDWTAPVQDETLVAQIKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL L+ + + ++ K+V+R
Sbjct: 248 LAEAGLGDAYK--IQVKQDRYAQVAVVKAATKEALLASNPNIDLREVDNLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKEAA 697
>gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens]
Length = 783
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/708 (41%), Positives = 432/708 (61%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
++ E R DGR L +R + CE LHGS+LF RG TQVLCTVT +
Sbjct: 350 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A SVM E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSVMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
Length = 769
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 301/709 (42%), Positives = 446/709 (62%), Gaps = 26/709 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQF 121
F+ GS +T+ETG+IAR + GAVV+ +D+T VL+TV + S + +DF PLTVDY EK +
Sbjct: 11 FQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +REG P E E L R+IDRPIRPLFP GFY+EVQV+ VLS + + DI
Sbjct: 71 AAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSLNPEVQADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G + G++++NP+ +L+ S ++LV A T LM
Sbjct: 131 PAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + L +AGK +++ E + KV+
Sbjct: 191 VESEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAKDEAFIAKVTA 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT----VRK 357
LAE + A + SK R +A +G V+ AL+EE + P AVD +
Sbjct: 251 LAEEPLRAAYQ--IRSKQARTQATRAVGASVQAALKEE----GVAFDPVAVDNLLFEIEA 304
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
R++R +I+A R+DGR VRPI S LP HGS+LF+RG+TQ L TLG +A
Sbjct: 305 RIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDA 364
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR+++L G RFMLHY+ PPF E G+ RRE+GHG LA++AL+AVLP +++FP
Sbjct: 365 QRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPNKDEFP 424
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+RV SE+ S+GS+SMA+VCGG ++L+DAG+PL+ HVAG+++GL+ E + +
Sbjct: 425 YTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGN-------RF 477
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + RL IL
Sbjct: 478 AVLTDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILG 537
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTL 656
M + + + + +PRL T+K + + +R +IG GA R + +ETG I + DGT+
Sbjct: 538 KMVEAVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTI 597
Query: 657 TVV---AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
T+ A + +K +E+ I E E+G +Y+G +T + ++GA V G+ GLLH+
Sbjct: 598 TIASTDADKAAFAQKRIEE----ITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHI 653
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
S+++H+ V +V+D + GQ + ++ + D +G IKLS+KA+ +PE V
Sbjct: 654 SQIAHQRVEKVTDFLEEGQVIKVKVLETDEKGRIKLSMKALLDKPEGYV 702
>gi|372489341|ref|YP_005028906.1| polyribonucleotide nucleotidyltransferase [Dechlorosoma suillum PS]
gi|359355894|gb|AEV27065.1| polyribonucleotide nucleotidyltransferase [Dechlorosoma suillum PS]
Length = 707
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 301/698 (43%), Positives = 448/698 (64%), Gaps = 18/698 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ F G+ +TLETG+IAR A+GAV++ +D+T VL TV +K +DF PLTVDY E
Sbjct: 6 KKTFTYGAHQVTLETGEIARQASGAVLVTVDDTVVLVTVVGAKQAKPGQDFFPLTVDYVE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GFY+EVQV+A+V+S + + D
Sbjct: 66 KTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQVVATVMSLNPEVD 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
DI A SAAL +S IP+ GPIG R+G I GQ+++NP+ +L S L+LV A T+
Sbjct: 126 SDIPALIGASAALAISGIPFSGPIGAARVGYIDGQYVLNPSATQLKDSKLDLVVAGTQSA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE+ + + H + + L E+AGK + E++ + + K
Sbjct: 186 VLMVESEAKELSEEVMLGAVVYGHEQMQAVINAINELVEEAGKPEWEWQAPAQDQVLVGK 245
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTV 355
+ L +A +E ++ SK R + + +I + AL E+ DE ++ L A++
Sbjct: 246 LEALVKAKLEEAYS--ITSKQTRSQRVKEIRSEAVAALCQGEDAPDENTVADLFFAMEAA 303
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R RI+A R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 304 ---IVRGRILAGEPRIDGRDTRTVRPITVRTGVLPRTHGSALFTRGETQGLVVATLGTSR 360
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G RFMLHY+ PP+ E G+ RRE+GHG LA++ALLAVLPP ++
Sbjct: 361 DEQIIDALAGEYKDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPPADE 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
F Y++RV SE+ S+GS+SMA+VCGGS+ALMDAG+PL+ HVAG+++GL+ E +
Sbjct: 421 FSYSMRVVSEITESNGSSSMASVCGGSLALMDAGVPLKSHVAGIAMGLIKEGN------- 473
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L+ A GRL I
Sbjct: 474 RFAVLTDILGDEDHLGDMDFKVAGTDSGITALQMDIKIQGITKEIMAVALDQAKAGRLHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
L+ M+ APRT+ +PRL T+K + + +R +IG GA+ R + EETG I + DG
Sbjct: 534 LNIMQDAQDAPRTEMSAYAPRLYTMKINPEKIRDVIGKGGAVIRALTEETGTSIDIQDDG 593
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+T+ + + E ++++ I E+EVG +Y+G V + ++GA V G+ GLLH+S
Sbjct: 594 TITIASTDGEAAEMARKRIEAITA-EVEVGKVYEGPVLKILDFGAIVSVLPGKDGLLHIS 652
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
++++E V+ V+D + GQ + ++ + D +G I+LS+K
Sbjct: 653 QIANERVNAVADYLKEGQVVRVKVLETDEKGRIRLSMK 690
>gi|414561873|ref|NP_716833.2| polyribonucleotide nucleotidyltransferase PnpA [Shewanella
oneidensis MR-1]
gi|187611309|sp|Q8EHL1.2|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|410519620|gb|AAN54278.2| polyribonucleotide nucleotidyltransferase PnpA [Shewanella
oneidensis MR-1]
Length = 699
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/703 (41%), Positives = 446/703 (63%), Gaps = 15/703 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K ++ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+ ++ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTESAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK ++ + E + ++
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEALVAQIKE 247
Query: 302 LAEA-HIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA IEA ++ + + ++ A + D L+ + + ++ K+V+
Sbjct: 248 LAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVD---LREVDNLLGSLEKKVV 304
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RI+ R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ++
Sbjct: 305 RGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKI 364
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+V
Sbjct: 365 DSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSV 424
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVL 477
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A+ R+ IL+ M+
Sbjct: 478 SDILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMD 537
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I + R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ +
Sbjct: 538 QAIGSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIA 597
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 598 SSNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDE 656
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEAD 761
V+ VSD + + Q+++++ + D +G ++LS+K A + P A+
Sbjct: 657 RVANVSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEPAAE 699
>gi|190889779|ref|YP_001976321.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CIAT
652]
gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
CIAT 652]
Length = 706
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/697 (41%), Positives = 434/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 2 EIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKT 61
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + +PD
Sbjct: 62 YAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 121
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T + L
Sbjct: 122 ILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDAVL 181
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E+ E + + H L+ I+LAE A K+ ++++ S E +
Sbjct: 182 MVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSALESEML- 240
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKAVDTVRKR 358
LAEA + + K +R A+D + VK EE + + + + ++ +
Sbjct: 241 GLAEAELREAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKHLQAK 298
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TLG + Q
Sbjct: 299 IVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQ 358
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP FPY
Sbjct: 359 YVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPY 418
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D +
Sbjct: 419 TLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD-------RFA 471
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR IL
Sbjct: 472 VLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGE 531
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT+
Sbjct: 532 MAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVK 591
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + +E + + I+ E E+G IY+G V ++GAFV F G + GL+H+S+L+
Sbjct: 592 IASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLA 650
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 SERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 687
>gi|402890926|ref|XP_003908719.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Papio anubis]
Length = 783
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/708 (41%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPLPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|380817552|gb|AFE80650.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
precursor [Macaca mulatta]
Length = 783
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/708 (41%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPLPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|408373077|ref|ZP_11170775.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax
hongdengensis A-11-3]
gi|407766915|gb|EKF75354.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax
hongdengensis A-11-3]
Length = 697
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 433/699 (61%), Gaps = 20/699 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
++ + G +TLETG+IAR A AV++ + +T+VL TV K D ++F PLTV+YQEK
Sbjct: 7 KQIQYGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGKKEADPSKNFFPLTVNYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP +++REG P E+E L R+IDRPIRPLFP GF +EVQV+A+V+S+D +DP
Sbjct: 67 TYAAGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSTDKNRDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI A TSAAL +S IP+ GPIG R+G G +I+NP+ EL+ S L+LV A T
Sbjct: 127 DIAAMIGTSAALAISGIPFNGPIGAARVGFKDGMYILNPSYTELAESALDLVVAGTEPAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+SE + + H E ++ A + G + +++ + +E +
Sbjct: 187 LMVESEAKELSEDQMLGAVLFGHQEMQPLIQGIKEFAVEVGTETWDWQPAAQNETLKAAI 246
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-----EECDEESLQVLPKAVDT 354
E + +Y+ E+ K+G+ +E EE E+ +V +
Sbjct: 247 KEKFEGALA-----EAYTITEKMARYAKVGELRDACVEAFATGEEGAPEAGEV-KELFGK 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K V+R+ +++ R+DGR LD VRPI + G L HGS+LF+RG+TQ + T TLG
Sbjct: 301 IEKAVVREAVVSGKPRIDGRALDAVRPIEAQVGVLAKTHGSALFTRGETQAIVTATLGGM 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G FML Y+FPP+C+ E G RRE+GHG LA + + AV+P E
Sbjct: 361 RDGQFIDALEGSRQDHFMLQYNFPPYCVGETGMIGSPKRREIGHGRLARRGVEAVVPNEK 420
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+RV SE+ S+GS+SMA+VCG SMALMDAG+PL VAG+++GLV E D
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGR---- 476
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + L+ A+ GR+
Sbjct: 477 --FAVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALDQANAGRIH 534
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SD 653
IL M + I+ R+Q N+P L TLK + D +R +IG GA R + EETG I + D
Sbjct: 535 ILGEMAKAITESRSQVSDNAPTLMTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDD 594
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G++ + + R + +V+ I E EVG IY+G VT V ++GAFV G +GLLH+
Sbjct: 595 GSVKIYGETREKAMDAVRRVEEITA-EAEVGTIYEGKVTRVVDFGAFVAILPGTEGLLHI 653
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S+++ E V +VSD V+ G + ++ + D RG IKLS+K
Sbjct: 654 SQIAEERVEKVSDYVNEGDIIKVKVLDVDQRGRIKLSMK 692
>gi|384950076|gb|AFI38643.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
precursor [Macaca mulatta]
Length = 783
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/708 (41%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPLPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|423522363|ref|ZP_17498836.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
gi|401175057|gb|EJQ82260.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
Length = 717
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRP+RPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPLRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEKSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ ILDHM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTVKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|376267701|ref|YP_005120413.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
gi|364513501|gb|AEW56900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
Length = 712
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EET +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETDVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|218904934|ref|YP_002452768.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH820]
gi|226702597|sp|B7JJ84.1|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
Length = 712
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE + GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSDKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|387869759|ref|YP_005801129.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
12163]
gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
12163]
Length = 738
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/707 (41%), Positives = 443/707 (62%), Gaps = 12/707 (1%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV- 106
P V +L ++F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 22 PDVKELTLLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPG 81
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+DF PLTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV
Sbjct: 82 QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQV 141
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLS 226
+A+V+S + + +PDI+A SAAL LS +P+ GPIG R+G + Q+++NPT DEL S
Sbjct: 142 IATVVSVNPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKES 201
Query: 227 DLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY 286
L+LV A T+ LM++ +A +SE+ + + H + ++ L +AGK + ++
Sbjct: 202 KLDLVVAGTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDW 261
Query: 287 KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ 346
+ ++E +++ LAE+ + + K ER +D I + AL E +
Sbjct: 262 QPEAVNEALRSRIAALAESRLSDAYR--ITEKQERYAQVDVIKSETTAALLAEDEALDAG 319
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ + + K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L
Sbjct: 320 EISDLLHALEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 379
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +
Sbjct: 380 VTATLGTARDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 439
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV +
Sbjct: 440 LAVMPKGDAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKD 499
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
+ ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 500 DN-------NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALN 552
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A RL IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG
Sbjct: 553 QAKGARLHILSVMEQAISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETG 612
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV G
Sbjct: 613 TTIEIEDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGG 671
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
G++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 672 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 718
>gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC1989]
gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC1989]
Length = 742
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/696 (41%), Positives = 431/696 (61%), Gaps = 19/696 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG++AR A GAV++ + +T+VL TV +K + R F PL+V Y EK +
Sbjct: 8 FQFGNDTVTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSVHYVEKAY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +RE P E+E L R+IDRPIRPLFP GF +EVQV+ V+S++ DPDI
Sbjct: 68 AAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAENDVDPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRIC-GQFIVNPTMDELSLSDLNLVYACTREKTL 240
A TSAAL +S IP+ GPIG R+G +++NP+ L+ S+L++V A T++ L
Sbjct: 128 AAMIGTSAALSISGIPFNGPIGGARVGYTQEAGYVLNPSYSALAESELDMVVAGTKDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A E+ E + + AH E ++ LA+ AGK + E+ ++E+ E +
Sbjct: 188 MVESEASELPEDIMLGAVLFAHQECQAVVQAITELAKDAGKPRWEWS---VAEENAELKA 244
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKAVDTVRK 357
+AE A D +Y ++ E K+ +A+ +EE + + A + K
Sbjct: 245 AVAE-QFGAAIAD-AYRTTDKMERYGKLTASRDEAVAALVNEEAGVTADAVKSAFSKLEK 302
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+ +RK ++A R+DGR VR I E G L HGSSLF+RG+TQ + TLG ++
Sbjct: 303 QTVRKSVVAGEPRIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNARDS 362
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q +++L G FMLHY+FP + + E G+ +RRE+GHG LA + + AVLP + DFP
Sbjct: 363 QIIDALEGERRDPFMLHYNFPSYSVGECGRMGSTSRREIGHGRLARRGVAAVLPTQEDFP 422
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SE+ S+GS+SMA+VCG S+A+MDAG+PL+ VAG+++GLV E +G +
Sbjct: 423 YTIRIVSEITESNGSSSMASVCGASLAMMDAGVPLKAPVAGIAMGLVKE---ESG----F 475
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + RL IL
Sbjct: 476 AVLTDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALGQALQARLHILA 535
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M + IS RT+ N+PR T+K D D +R +IG GA R I EETG + + D G +
Sbjct: 536 EMNKVISTSRTEVSENAPRFETIKVDPDKIRDIIGKGGATIRSITEETGASVDIDDTGLV 595
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
V A + ++ + K+ I E E+G IY+GVV + ++GAFV F G+ GL+H+S++
Sbjct: 596 KVYAADNEALQAAMNKIGEITA-EAEIGAIYEGVVARIVDFGAFVTFLPGKDGLVHISQI 654
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ E V+ VSD + GQ + ++C+ D RG IKLS+K
Sbjct: 655 AEERVNAVSDYLKEGQTVKVKCLDVDQRGRIKLSIK 690
>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|434376910|ref|YP_006611554.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|401875467|gb|AFQ27634.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
Length = 712
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ + + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|374323518|ref|YP_005076647.1| polyribonucleotide nucleotidyltransferase [Paenibacillus terrae
HPL-003]
gi|357202527|gb|AET60424.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Paenibacillus terrae HPL-003]
Length = 700
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/697 (42%), Positives = 437/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV + ET VL TVT+S DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASNAPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P ++ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ GQF++NP + + + SDL LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV-S 300
++ + EI E+ + + H E + +L + AGK+K + KL + E+ +V S
Sbjct: 186 VEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEVRS 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
AE +EAV K R EA+D + ++ E + E E L+ + + + + K
Sbjct: 246 YAAERLVEAV---KIVEKHARQEAIDAVNEETVAHFEVQYIETPELLKDVSEVLYDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR+LDE+RPI ++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + GE
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKD-----GE--HVS 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ + L A +GRL IL
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKINGIDRQILQDALNQAREGRLFILSK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR Q +P++ T+ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MMEAIQTPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ + EK ++ I+ +E+ +G IY G V ++++GAFVE G+ GL+H+S+LS
Sbjct: 596 IASTNQEMNEKARSIIEGIV-KEVVIGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++++ D +G + LS KAV
Sbjct: 655 TERVAKVEDVVAIGDTITVKVTEIDQQGRVNLSRKAV 691
>gi|372285529|dbj|BAL45921.1| polynucleotide phosphorylase/polyadenylase Pnp [Shewanella
livingstonensis]
Length = 701
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 444/702 (63%), Gaps = 14/702 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D RDF PLTV+YQEK +
Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 71 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I ++++NPT+D+L+ S LNLV A T+ LM
Sbjct: 131 VSMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAGTKAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+ + + H + ++ +AGK ++ + + + K+
Sbjct: 191 VESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQVLVAKIKE 250
Query: 302 LAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + EA + ++ + + + A + D + L + ++ K V+
Sbjct: 251 LAEAGMTEAYQIEVKQDRYVQVGIVKAAAKAALVAENPDVDTREVDNL---LGSLEKSVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RII+ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TLG +AQ++
Sbjct: 308 RGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY++
Sbjct: 368 DSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEFPYSI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 428 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------EFVVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMD 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ I R ++PR+ T+K + + +R +IG GA+ R + EETG I + D GT+ +
Sbjct: 541 QAIGTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 601 SSNGEATKEAIRRIEEITA-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
V+ VSD + + Q+++++ + D +G ++LS+K + A+
Sbjct: 660 RVANVSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQAKETAE 701
>gi|429125297|ref|ZP_19185829.1| polyribonucleotide nucleotidyltransferase [Brachyspira hampsonii
30446]
gi|426278851|gb|EKV55881.1| polyribonucleotide nucleotidyltransferase [Brachyspira hampsonii
30446]
Length = 713
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/697 (41%), Positives = 447/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPDGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL SDL+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELHTSDLDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+A+E+SE+ + LAH E KY++ Q +A G QK E +L ++ V+
Sbjct: 189 EAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLVKTVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
A IEA +P +K R E++D ++++ ++ ++E L K + ++ + ++R+
Sbjct: 249 AKIEAANYNPDKTK--RNESMDNAFDEIEEYIKTTTEDEKLISQVKGICHSIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ + +R DGR LDE+RPI +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKSMRPDGRALDEIRPISTMVNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLPP++ FPYTVRV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTVRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y+ILTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKILTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD ++ I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIDATI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
+ D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 TGAGEISDF-APKYKTMNVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K ++ ++ + ++ EVG +Y G+V +K++GAF+E G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTIKLINAYV-KDPEVGEVYDGIVKDIKDFGAFIEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ + DV+ G LS KA+ +P
Sbjct: 658 NVEEVLKIGDEVKVKIL--DVKGGKYSLSRKALLEKP 692
>gi|423395894|ref|ZP_17373095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|423406770|ref|ZP_17383919.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
gi|401653636|gb|EJS71180.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|401660060|gb|EJS77543.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
Length = 712
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINAVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++V IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVDEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
Length = 696
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/691 (41%), Positives = 420/691 (60%), Gaps = 13/691 (1%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
E + IT+ETGKIA+ A+GAV++ +T VL T + K + F PLTV+YQEK +A
Sbjct: 8 ECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYA 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP ++ +REG P + E L R+IDRPIRPLFP GF ++ QVMA+V+S+D DP I+
Sbjct: 68 GGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDHDPGIL 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A SAALM+SD+P+ GPI +++GR+ G FI NP+ ++ SD+ +V A +++ LM+
Sbjct: 128 AMIGASAALMVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDMEIVIAASKDAILMV 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+SE DL + L Q L K K+ +++ +V L
Sbjct: 188 EGSASEVSENDLLEAIFFGKQAVQGILAAQEELVAKVAPVKRNIPAPVVNTDLKARVDAL 247
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRK 362
A+ + +K ER +A+D I AL EE E S + + ++ + ++R+
Sbjct: 248 AKEEMRGAVR--IKTKVERHDAIDAITVKTVAALAEEF-EGSEKDVKAFIEELEYDLVRE 304
Query: 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLES 422
II +G R+DGR +R I E G LP HGS+LF+RG+TQ + TLG + QR++S
Sbjct: 305 HIIKDGERIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDS 364
Query: 423 LVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRV 482
L G K+F+LHY+FPP+ + E R+ RRE+GHG LAE+AL VLP +DFPYT+R+
Sbjct: 365 LYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIRI 424
Query: 483 NSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTD 542
S++ S+GS+SMATVCGGS+++MDAGIP++ VAG+++GL+ E D D+ IL+D
Sbjct: 425 VSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGD-------DFAILSD 477
Query: 543 ILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMERE 602
ILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L A GR+ IL M +
Sbjct: 478 ILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKT 537
Query: 603 ISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAK 661
I+ R +PR+ T+ D +R +IG G R + E TG I + D G + + +
Sbjct: 538 IATSRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIDDTGKINIAST 597
Query: 662 NRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV 721
N+ + ++ + + E E G +Y G V + E+GAFVE G GL+HVSEL E V
Sbjct: 598 NKEACDLAIKMIRNLTA-EAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERV 656
Query: 722 SRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
VSD++ G ++ ++CIG D +G IKLS K
Sbjct: 657 KNVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687
>gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
gi|257096699|sp|B1ZS98.1|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
Length = 730
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/710 (41%), Positives = 422/710 (59%), Gaps = 23/710 (3%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQFAQGVIPN 128
IT TG IA+ ANGAV + + ET V T ++ +D+ PLTVDY+EK A G P
Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFPG 73
Query: 129 TYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATS 188
Y +REG P E+E+L R+ DRP RPLFP GF +EVQ++ + S+D + DI N S
Sbjct: 74 GYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDISMVNGAS 133
Query: 189 AALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQARE 248
AAL +SDIPW GPI +R+ I G+F+ NPT+D++ S L+L+Y + LMI+ A +
Sbjct: 134 AALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVGNEKDMLMIEGSADQ 193
Query: 249 ISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL--AEAH 306
I E+ L H L+ L + GK K + L + + + + E
Sbjct: 194 IPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGATPEARTIIERVVPTERL 253
Query: 307 IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ--VLPKAVDTVRKRVIRKRI 364
IEA+F K R A+ + ++ K AL E E L + ++ + RK +
Sbjct: 254 IEAIF---GKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVVFEDLQYKAYRKTV 310
Query: 365 IAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLV 424
+ GVR DGR ++RP+ + G LP +HGS++F RGDTQ + TLG +AQ L++L
Sbjct: 311 LERGVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALT 370
Query: 425 GP-PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G +K F+LHY+FPPF + E G+ G RRE+GHG LAE++L+ VLPPE+ FPY++RV
Sbjct: 371 GGVKSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYSIRVV 430
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
SE+MAS+GSTSMA++CGG ++LMDAG+P+ VAG+S GL+++ + S G I+ + +TDI
Sbjct: 431 SEIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQ-NASDGSIEKWVTITDI 489
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
LG EDH GDMDFK+AGT G+T QLD+K G+P +I + A R++IL M +
Sbjct: 490 LGEEDHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDARMEILKVMLGSL 549
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD---GTLTVVA 660
APR + +PR+ T++ D + + LIGP G R+I E TG +I +++ G + V +
Sbjct: 550 PAPRADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDIAEDDSGKVFVYS 609
Query: 661 KNRSVMEKVLEKVDFIIGRE---------IEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
N M + ++++D + G IEVG IY G VT VKE+G FVE G +GL
Sbjct: 610 NNAEAMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGCFVECTPGNEGLC 669
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRPEA 760
HVSEL+ V R DVV +G ++++CIG D R G ++LS KA EA
Sbjct: 670 HVSELADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRKAAMKELEA 719
>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase [Bacillus cereus B4264]
gi|226702617|sp|B7HDT0.1|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
Length = 712
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D + L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEVDADILGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7]
gi|123131654|sp|Q0HXR0.1|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7]
Length = 699
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/700 (41%), Positives = 444/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K ++ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+ +L+ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAGTEGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK + + +E + +V
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEALVAQVKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K ER + + K+AL E L+ + + ++ K+V+R
Sbjct: 248 LAEAGLAQAYQ--IQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------NFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEAA 697
>gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
16795]
gi|164602924|gb|EDQ96389.1| polyribonucleotide nucleotidyltransferase [Clostridium bartlettii
DSM 16795]
Length = 701
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/704 (40%), Positives = 444/704 (63%), Gaps = 14/704 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLTVDYQEKQF 121
E+ R +++E GKIA+ A+G+ +L ET V+ V+ S++ DF PL+VDY+EK +
Sbjct: 9 MELAGRELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLSVDYEEKLY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP +++REG E+ L R+IDRPIRPLFP GF ++VQV+A+VLS D PD+
Sbjct: 69 SVGKIPGGFLKREGKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDHDCTPDV 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A +S AL +S+IP+ GP G + +G + G ++NPT ++ S L+L + T++ +M
Sbjct: 129 VAMIGSSVALSISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSSLHLTVSGTKDAVMM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A E+ E + + AH E K + + + GK+K E+ E KV
Sbjct: 189 VEAGADEVPESLMLEAILTAHEEIKKIVAFIEEIVAEVGKEKMEFIEPKADEDIEAKVRE 248
Query: 302 LAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LA + EAV K ER EA+D + +V + +EE EE + +D + K +
Sbjct: 249 LATDKMKEAVRV---IEKLERQEAMDAVKNEVLDSFDEEALEEFGGDIVAVLDKIIKEEV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK I+ EG R D R+ DE+RPI+C+ G +P HGS LF+RG TQV+ TLGA + Q L
Sbjct: 306 RKMIVHEGRRPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALGDVQIL 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L +KR+M HY+FP + + EV G RRE+GHG LAE+ALL V+P + +FPY +
Sbjct: 366 DGLDEEESKRYMHHYNFPAYSVGEVRPSRGPGRREIGHGALAERALLPVIPSKEEFPYAI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SEV++S+GSTS +VCG +++L+DAG+P+++ VAG+++GL+ + G+I IL
Sbjct: 426 RLVSEVLSSNGSTSQGSVCGSTLSLLDAGVPIKDMVAGIAMGLIEQ----DGKIA---IL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DI G+EDHLGDMDFK+AGT G+TAIQ+DIK AGI +I+ L A GRL IL+ M
Sbjct: 479 SDIQGMEDHLGDMDFKVAGTEHGITAIQMDIKIAGIDEEILRTALAQARVGRLHILNEMR 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
+ I APR + +P++ T+ + D +R +IGP G + KI +ETG +I + G + +
Sbjct: 539 KTIDAPRPHLSKYAPKIITMNINPDKIRDVIGPGGKVITKIIDETGVKIDIEQTGEVFIS 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
++ +++ +K+ I+ E+EVG +YKG VT + +GAFVE G++GLLH+S ++HE
Sbjct: 599 GIDQEMIDLAQKKISDIVA-EVEVGQVYKGKVTRILNFGAFVELLPGKEGLLHISHIAHE 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
V++V DV+++G ++ ++ D +G + +S KA+ P+P+ D K
Sbjct: 658 RVNKVEDVLNIGDEVEVKVTEIDEKGRVNVSRKALLPKPKKDHK 701
>gi|407706267|ref|YP_006829852.1| cell division protein FtsL [Bacillus thuringiensis MC28]
gi|407383952|gb|AFU14453.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
MC28]
Length = 712
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|423483397|ref|ZP_17460087.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
gi|401140948|gb|EJQ48503.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
Length = 717
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEVDADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|395783580|ref|ZP_10463429.1| polyribonucleotide nucleotidyltransferase [Bartonella melophagi
K-2C]
gi|395425702|gb|EJF91862.1| polyribonucleotide nucleotidyltransferase [Bartonella melophagi
K-2C]
Length = 733
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 297/709 (41%), Positives = 437/709 (61%), Gaps = 24/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T+K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTYKVEIEWAGRPLILETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E+L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKTYAVGKIPGGYFKRESRPSENEILISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A+E+ E + + ++ I+LAE A K+ +++ LS
Sbjct: 181 GTENAVLMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPRDFIPEDLSD 240
Query: 291 ISEQTLEKV-SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD---EESLQ 346
+ LE V +L +A+ TD K ER A+D I +V E + E +
Sbjct: 241 LETTMLEMVEKDLQKAY---TITD----KQERHAAIDAIKAEVVDKFMSETEGNCEFNAD 293
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ +R +++R+ I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L
Sbjct: 294 KIATVFKHLRAKIVRQNILDTGKRIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQAL 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 354 VIATLGTSEDEQYIDSLTGTYKETFLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAI 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP ++ FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 414 HPILPTKDSFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
GE + IL+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ LE
Sbjct: 474 -----GE--RFAILSDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALE 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG
Sbjct: 527 QAKDGRIHILNEMSKALTSARDELSVFSPRIEMINIPVDKIRDVIGSGGKVIREIVEQTG 586
Query: 647 GRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ D G + + + + +E + I+ E E G IY+G V E+GAFV F G
Sbjct: 587 AKINIEDNGAIKIASTDAKAIEAAKRWIHSIVD-EPETGAIYQGTVVKTAEFGAFVNFFG 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+L+ E V + +D+V G ++ ++ +G D RG I+LS+K V
Sbjct: 646 SRDGLVHISQLASERVQKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
azorense Az-Fu1]
gi|257096710|sp|C1DTW6.1|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 707
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/706 (41%), Positives = 446/706 (63%), Gaps = 23/706 (3%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVL-STVTSSKGDSVRDFLPLTV 114
+E K + E+ +ETG A+ ANGAV++ +T VL + V S + + DFLPLTV
Sbjct: 3 IEEIKVQTEVNGAPFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTV 62
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+Y+EK +A G IP +++REG P +RE+LV R IDRPIRPLFP GFY+++ + A LS+D
Sbjct: 63 EYREKYYAYGKIPGGFVKREGKPTDREILVARNIDRPIRPLFPKGFYNDIVITAYTLSAD 122
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K DPD++ SAAL +SDIP+ GPI +R+ R+ G+FIVNPT + + +D+ +V A
Sbjct: 123 DKYDPDVLGIVGASAALHISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQADIEIVVAG 182
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
+++ +M++ A+E+ E+D+ + H E K +E Q L K GK+K ++++ E+
Sbjct: 183 SKDAIVMVEGGAKEVPEEDILEAMMFGHQEIKKLIELQEELRLKCGKEK--IQVAIDEEE 240
Query: 295 TL--EKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
+ +K+ + I+ F TD K +R + ++ I ++ K L E EE ++
Sbjct: 241 IILKDKLKEFSYEKIKEAFKITD----KKQRNKTINAIFEEAFKTL--EIPEEKIKKASF 294
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ V+R I+ EG+R+DGR+ +E+RPI+ + G P HGS++F+RG TQ TVT
Sbjct: 295 IYKDIVSNVMRDNILNEGIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVT 354
Query: 411 LGAPAEAQRLESL-VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
LG+ +E Q ES+ G KRFMLHY+FPPF E +RRE+GHG LAE+AL +
Sbjct: 355 LGSLSEGQIEESIEAGEVMKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNLAERALEPL 414
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+PPE +FPY +RV S+++ S+GSTSMATVCGGS+AL DAG+P+++HVAG+++GL+ D
Sbjct: 415 IPPEEEFPYAIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAED- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ IL+DILG EDHLGDMDFK+AGTR GVT+IQ+DIK G+ +I+ + L+ A
Sbjct: 474 ------KFVILSDILGDEDHLGDMDFKVAGTRDGVTSIQMDIKVKGLTKEILEKALQQAR 527
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR ILD M + I PR + +P + TL+ D + +IGP G +KI EET +I
Sbjct: 528 DGRNYILDLMYQAIPEPRKEVSPYAPTVTTLRVLPDKIPIIIGPAGKNIKKIIEETKVKI 587
Query: 650 SVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ +G + + A ++ EK + ++ +I ++EVG +Y G VT V++YGAFVE G+
Sbjct: 588 DLDPEGLVKIYATSKEAAEKAVSMINELI-LDVEVGEVYMGKVTRVEDYGAFVELLPGRL 646
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
LLHVS+++ E + + + VG L ++ D +G IK+SLK V
Sbjct: 647 SLLHVSQITGERLKSAKEKIKVGDVLKVKVSEIDDQGRIKVSLKDV 692
>gi|406939725|gb|EKD72689.1| hypothetical protein ACD_45C00613G0015 [uncultured bacterium]
Length = 697
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/706 (41%), Positives = 440/706 (62%), Gaps = 19/706 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTV 114
+ K+ F G +TLETG IAR A AV++GMD+T VL TV S RDF PLTV
Sbjct: 1 MTAVKKTFRYGDHTVTLETGVIARQATAAVLVGMDDTMVLVTVVGQASTSEDRDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ +A G IP Y +RE P E+E L R+IDRP+RPLFP GF EVQV+A+V+S +
Sbjct: 61 NYQERTYAAGRIPGGYFKREAKPSEKETLTSRLIDRPVRPLFPKGFNFEVQVIATVVSMN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ D DI A SAAL LS +P+ GP+G R+G +I+NPT+ +L S+L++V A
Sbjct: 121 PEIDSDIPAMLGASAALALSGMPFMGPLGAARVGYTDNAYILNPTLSQLETSELDMVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + LM++ +A+E+ E + + AH + L ++AGK +++ +++
Sbjct: 181 TEKAVLMVESEAKELPEPAMLGAVMFAHQHMQTAISAIKELVKEAGKPAWDWEAPLVNPV 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVD 353
++V+ L EA + + K ER +A+ +I + ++K L E D+E +L +
Sbjct: 241 VEKRVAELVEAELVKAYQ--IRDKQERQDAIAEIRERLLEKMLAENTDKEDEALLMEDTK 298
Query: 354 TVRK----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
V K R++R +I+ R+DGR VRPI + G LP HGS+LF+RG+TQ L
Sbjct: 299 YVFKNLESRIVRGQILEGKPRIDGRDTKTVRPISVQVGVLPRTHGSALFTRGETQALVVA 358
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG +AQ +++L G + FMLHY+FPPF + EVG RRE+GHG LA++ + AV
Sbjct: 359 TLGTERDAQTIDALEGEHKETFMLHYNFPPFSVGEVGFVGSPKRREIGHGNLAKRGVKAV 418
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP E FPY +RV SE+ S+GS+SMATVCG S+ALMDAG+P++ HVAG+++GLV E +
Sbjct: 419 LPKE--FPYVLRVVSEITESNGSSSMATVCGSSLALMDAGVPIRAHVAGIAMGLVKEGN- 475
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + LE AH
Sbjct: 476 ------RFAVLSDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIDGITEEIMRQALEQAH 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GR+ IL+ M R I R + +PR+ ++ D +R +IG G R + EETG +
Sbjct: 530 EGRIHILEIMNRAIQQARAEMSVYAPRILNMRIPTDKIRDVIGKGGVTIRSLTEETGTIV 589
Query: 650 SVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+S DG + V A + + E+ + +++ + ++ VG +Y+G V + ++GAFV G+Q
Sbjct: 590 DISDDGEIRVAAADLAACEEAIRRIERLTA-DVAVGEVYEGTVVKLADFGAFVSILPGKQ 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+++ E V +V+D ++ GQ + ++ + D +G I+LS+K V
Sbjct: 649 GLVHISQIAKERVEKVTDKLAEGQVVRVKVLEIDKQGRIRLSMKEV 694
>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|423401351|ref|ZP_17378524.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-2]
gi|423458010|ref|ZP_17434807.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X2-1]
gi|423477945|ref|ZP_17454660.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-1]
gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|401148394|gb|EJQ55887.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X2-1]
gi|401654341|gb|EJS71884.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-2]
gi|402428107|gb|EJV60204.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-1]
Length = 712
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
+E + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 SEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 715
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 443/704 (62%), Gaps = 24/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ETKVL+TV S K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF +G+ ++ Q++ +V+ D + D
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVTVVQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T +
Sbjct: 126 PDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQESKLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSMISEQT 295
LM++ +A+E+ E+ + + H ++ I+LAE A K+ +++ S + +
Sbjct: 186 VLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSALEAEM 245
Query: 296 LEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKA 351
L+ V + L+ A+ + K +R A+D + VK A E E + + + +
Sbjct: 246 LKIVGDELSNAY-------KNVDKQKRYAAVDAVKAKVKAAFAPAEGEDAKYTSEQIGSV 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L TL
Sbjct: 299 FKELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G ++F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 359 GTGEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 419 SADQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE----- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L+ A G
Sbjct: 474 GE--RFAVLSDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M ++ R++ +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 532 RQHILGEMAHALTGARSELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKIASSNAKEIEAAKKWIHTIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+++ V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLANDRVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
Length = 705
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/689 (42%), Positives = 438/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLS+ T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+FI+NP +++L SD+NLV A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + +E Q + + GK K + L + + ++V LAE +
Sbjct: 195 EVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLADEVKALAETDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-DEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A+ + + V + EEE DE +++ ++ + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAISAVKKAVVEKFEEEDRDEATIKQAKDVLNKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ DI+ E L+ A KGR++ILD M I A
Sbjct: 486 EDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTIPAS 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+K + D +R +IGP G KI E+TG +I + DGT+ + + +
Sbjct: 546 RGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTEEDM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAF+E G+ GL+H+SEL+ + V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G +L ++ D +G + LS KAV
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693
>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
Ep1/96]
gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
Ep1/96]
Length = 732
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/707 (41%), Positives = 443/707 (62%), Gaps = 12/707 (1%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV- 106
P V +L ++F+ G +TLETG +AR A AV++ MD+T V TV K
Sbjct: 16 PDVKELTLLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPG 75
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+DF PLTV+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV
Sbjct: 76 QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQV 135
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLS 226
+A+V+S + + +PDI+A SAAL LS +P+ GPIG R+G + Q+++NPT DEL S
Sbjct: 136 IATVVSVNPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKES 195
Query: 227 DLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY 286
L+LV A T+ LM++ +A +SE+ + + H + ++ L +AGK + ++
Sbjct: 196 KLDLVVAGTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDW 255
Query: 287 KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ 346
+ ++E +++ LAE+ + + K ER +D I + AL E +
Sbjct: 256 QPEAVNEALRSRIAALAESRLSDAYR--ITEKQERYAQVDVIKSETTAALLAEDEALDAG 313
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ + + K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L
Sbjct: 314 EISDLLHALEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 373
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
T TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +
Sbjct: 374 VTATLGTARDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 433
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV +
Sbjct: 434 LAVMPKGDAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKD 493
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
+ ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 494 DN-------NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALN 546
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A RL IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG
Sbjct: 547 QAKGARLHILSVMEQAISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETG 606
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV G
Sbjct: 607 TTIEIEDDGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGG 665
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
G++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 666 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 712
>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase [Bacillus cereus ATCC 14579]
gi|81433861|sp|Q819Z1.1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
14579]
Length = 712
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEEDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG + E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGAIGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIPEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+ V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEAKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|423367850|ref|ZP_17345282.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
gi|401082711|gb|EJP90976.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
Length = 717
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 438/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRP+RPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPLRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTTVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A+ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y ILT
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILT 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|373857338|ref|ZP_09600080.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. 1NLA3E]
gi|372452988|gb|EHP26457.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. 1NLA3E]
Length = 706
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/689 (41%), Positives = 435/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ A+GA ++ ET VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVEIGQLAKQASGAALVRYGETVVLSTATASKEPKALDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF ++VQV++ ++S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSIIMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI +GRI G+F++NPT+D+ SD+NL A T+ M++ +A
Sbjct: 135 SLALCVSDIPFEGPIAGAVVGRIDGKFVINPTVDQAEKSDINLTVAGTKYAINMVEARAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
++ E+ + + H E + + Q + + GK K+E L + ++ ++ E +
Sbjct: 195 QVPEEVMLEAIMFGHEEIKRLIAFQEEIVAQIGKPKREIALFELDKELEAEIREFCEEEM 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIRKRIIA 366
A K ER +A+ + + V E EE D L+ + + +D + K +R+ I
Sbjct: 255 VAAIQ--VQEKHEREDAIKAVKEKVMAKYEAEEADANDLKQVKQILDKIVKGEVRRLITV 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E +R DGR++DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGAMGDVQILDGLGIE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
KRFM HY+FP F + E G G RRE+GHG L E+AL VLP E DFPYT+R+ SEV
Sbjct: 373 EEKRFMHHYNFPNFSVGETGPSRGPGRREIGHGALGERALEPVLPSEKDFPYTIRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C +MA+MDAG+P++ VAG+++GLV +GE Y ILTDI G+
Sbjct: 433 LESNGSTSQASICASTMAMMDAGVPIKAPVAGIAMGLV-----KSGE--HYTILTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR+ IL+ M ++ P
Sbjct: 486 EDHLGDMDFKVAGTSQGVTALQMDIKIDGLSREILQEALQQAKKGRMHILESMLNTLAQP 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
+T+ + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + N +
Sbjct: 546 KTELSKYAPKILTMNINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINDEM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ I+ RE+E+G +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDIV-REVEIGQMYLGKVKRIEKFGAFVEIFAGKDGLVHISELAEERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
D++++G ++ ++ D +G + LS KAV
Sbjct: 665 DILALGDEILVKVTEVDKQGRVNLSRKAV 693
>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|423378354|ref|ZP_17355638.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|423441462|ref|ZP_17418368.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|423448312|ref|ZP_17425191.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|423464536|ref|ZP_17441304.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|423533878|ref|ZP_17510296.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
gi|423540853|ref|ZP_17517244.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|423547091|ref|ZP_17523449.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|423615932|ref|ZP_17591766.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|423623117|ref|ZP_17598895.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|401128906|gb|EJQ36589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|401172041|gb|EJQ79262.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|401178812|gb|EJQ85985.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|401259890|gb|EJR66064.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|401260469|gb|EJR66642.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|401636620|gb|EJS54374.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|402418123|gb|EJV50423.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|402420803|gb|EJV53074.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|402464097|gb|EJV95797.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
Length = 712
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|257096715|sp|B5YHN2.1|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 710
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/704 (41%), Positives = 441/704 (62%), Gaps = 24/704 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 120
E EI + + L+TG A+ NG+V+ +T VL TV + K DF+PLT+DYQEK
Sbjct: 4 ELEIKGKKLVLQTGIFAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEKA 63
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
++ G IP + +REG P +RE+LV R+IDRP+RPLFP GF +E Q +ASVLS + D
Sbjct: 64 YSAGKIPGGFFKREGKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIAD 123
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I++ S+AL +SDIP+ GP+ +R+G + +FI+NP DE S LNLV A T E
Sbjct: 124 ILSIIGISSALTISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTEEAVT 183
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK-V 299
M++ A E SE+ L L+ AH K + Q +L + +GK K+E +S+ ++ ++K +
Sbjct: 184 MVEGGAAECSEETLVEALKFAHTHIKKIIALQKKLQQLSGKPKREI-ISLNGDEEIQKAI 242
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKI---------GQDVKKALEEECDEESLQVLPK 350
N+ IE P K ER +ALD++ ++ ++ L D++ +
Sbjct: 243 LNIIGGKIENALFLPK--KVERQQALDELLNECLQNLNTEEFRQKLYGNFDKDISLEITN 300
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A D V K+ +R+ I+ +G+R DGR+ DE+RPI C G LP +HGS+LF+RG+TQ L T
Sbjct: 301 AFDKVIKKFMRESIVKKGIRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATT 360
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q+++SL G K FMLHY+F PF + EV RRE+GHG LAE+AL V+
Sbjct: 361 LGTSEDEQKVDSLEGEIFKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAERALSYVI 420
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +++FPYT+RV S+++ S+GS+SMATVCG +++LMDAG+P++ VAGV++GL+ E D +
Sbjct: 421 PSKDEFPYTIRVVSDILESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKT 480
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+LTDILG+EDH GDMDFK+AGT G+TA Q+D+K +GI +I + L+ A +
Sbjct: 481 V-------VLTDILGMEDHYGDMDFKVAGTEKGITAFQMDVKISGISYEIFKKALKQAKQ 533
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL M IS P+ + +PR+ ++ + +R +IG G + + I EETG +I
Sbjct: 534 ARLFILKKMAETISEPKKELSLYAPRIYKIQVKPEKIRDIIGTGGKVIKGIIEETGVKID 593
Query: 651 VSD--GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ D G + + + N S +K +E + I +E E+G IY G VT + ++GAFVE G +
Sbjct: 594 IEDKEGIVKIASSNESAAQKAIEIIKGIT-QEAELGRIYMGKVTRIVDFGAFVEIMPGVE 652
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GLLH+S+++ + + +VS+V+ G+Q+ ++ I D G ++LS K
Sbjct: 653 GLLHISQIADKRIQKVSEVLKTGEQIPVKVIEIDELGRVRLSRK 696
>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
HOxBLS]
gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
HOxBLS]
Length = 707
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 441/702 (62%), Gaps = 23/702 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
F+ G +TLETG+IAR A+GAVV+ MD+T VL+TV + D V+ DF PLTVDY EK
Sbjct: 9 FQYGQHTVTLETGEIARQASGAVVVSMDDTVVLATVVAK--DDVKPGQDFFPLTVDYIEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP ++ +REG P E+E L R+IDRPIRPLFP G+++EVQV+ VLS + + DP
Sbjct: 67 SYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSVNPEIDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI + A SAAL +S IP+ GP+G R+G I GQ+++NPT +L LS L+LV A T +
Sbjct: 127 DIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSQLDLVVAGTEQAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+ E + + H + ++ L + GK + E+ +E+ + V
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSEGGKPEVEWAPPARNEELIAAV 246
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT----- 354
+ +AE + + K R L I + V + L E + + P +V+
Sbjct: 247 TRIAEPELRKAYQ--IRQKQARSSELRHIYEKVNQTLASEAEAKGAAA-PDSVEVGNILF 303
Query: 355 -VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ ++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 304 DLEAGIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGT 363
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q++++L+G + FM+HY+ PPF E G+ RRE+GHG LA++AL+A LP +
Sbjct: 364 SRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVACLPSQ 423
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++F Y++R+ SE+M S+GS+SMA+VCGGS+ALMDAG+P++ HVAG+++GL+ E +
Sbjct: 424 DEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKTHVAGIAMGLIKEGN----- 478
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A +GR+
Sbjct: 479 --KFAVLTDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIQGITKEIMQVALAQAREGRM 536
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS- 652
IL M+ + +T+ +PRL T++ + + +R +IG GA+ R + EETG +I ++
Sbjct: 537 HILGKMQEAMPQFKTELSDFAPRLITMRINPEKIRDVIGKGGAVIRALTEETGAQIDIND 596
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG +T+ + + + ++ +++ + +E G Y G V + ++GA V+ G+ GLLH
Sbjct: 597 DGIVTIASVDAAAGQEAKRRIEELTA-SVETGKTYDGTVLKLLDFGAIVQILPGKDGLLH 655
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S+++ E V+ VSD + GQ + ++ + D RG IKLS+KAV
Sbjct: 656 ISQIASERVNAVSDYLEEGQSVRVKVLETDERGRIKLSMKAV 697
>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
SW]
gi|226702682|sp|B6IVG3.1|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
centenum SW]
Length = 707
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 301/707 (42%), Positives = 437/707 (61%), Gaps = 23/707 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ + F++E G R + LETGK+AR A+GAV +T VL+T ++K DF PLT
Sbjct: 1 MFKVFRKEMMWGGRKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E+E+L R+IDRPIRPLF G+ +E QV+ +VLS
Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A ATSAAL +S IP+ GPIG R+G GQF++NPT++++ SDL+LV A
Sbjct: 121 DLENDPDIVAMVATSAALTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASDLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A+E+ E + + H E ++ I LAE A K +
Sbjct: 181 GTTEGVLMVESEAKELPEDVMLGAVMFGHREFQPVIDLIIDLAEMAAKDPMAIPAPAYDK 240
Query: 294 QTLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
++ +++ L + +T K ER A IG KALE E + P+AV
Sbjct: 241 DAVKTRMAALIGQDVRQAYT--LTVKQERYAA---IGAAKLKALETMVAEGTA---PEAV 292
Query: 353 DTVRKR----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+V K ++R +I G R+DGR ++RPI + G LP HGS+LF+RG+TQ L
Sbjct: 293 ASVFKELESDILRGSVIETGKRIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVV 352
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+
Sbjct: 353 ATLGTNQDEQIVDALEGEYRESFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRP 412
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP + FPYT+RV SE+ S+GS+SMATVCG S+++MDAG+PL VAG+++GL+ E
Sbjct: 413 LLPTKETFPYTIRVVSEITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKE-- 470
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+ L A
Sbjct: 471 ---GE--KFAVLSDILGDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMKIALAQA 525
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR+ IL M + ++ R ++N+PR+ + D +R +IG G + R+I E+TG +
Sbjct: 526 KDGRVHILSEMNKALNTAREAVNQNAPRITVINIPKDKIRDVIGSGGKVIREIVEQTGAK 585
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ V A + E ++ + I+ E EVG IY+G V + ++GAFV F G +
Sbjct: 586 IDIEDDGTVKVAAVDGKASEAAIKWIKGIVA-EPEVGEIYEGKVVKIMDFGAFVNFLGSR 644
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+SEL +E V++V+DVV G + ++ +G D RG +KLS+K V
Sbjct: 645 DGLVHISELKNERVAKVTDVVKQGDAVKVKVLGFDDRGKVKLSMKVV 691
>gi|392953990|ref|ZP_10319542.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
gi|391857889|gb|EIT68419.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
Length = 703
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/722 (41%), Positives = 445/722 (61%), Gaps = 40/722 (5%)
Query: 45 TPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-G 103
TPAP + K+ F+ G + +T ETG + R A AV++ +D+T V+ TV + K
Sbjct: 6 TPAPVI---------KKSFQYGDKTVTFETGHMVRQATAAVIVSVDQTVVMVTVVAKKEA 56
Query: 104 DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHE 163
+ +DF PLTVDY E+ +A G IP + +REG P E+E L R+IDRP+RPLFP GFY+E
Sbjct: 57 KAGQDFFPLTVDYMERTYAGGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEGFYNE 116
Query: 164 VQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDEL 223
+Q++A+V+S + + D DI A SAAL LS +P+ GPIG ++G GQ+I+NP+ +L
Sbjct: 117 IQLVATVVSLNPEVDGDIPAMLGASAALALSGVPFQGPIGAAKVGYANGQYILNPSKTQL 176
Query: 224 SLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQK 283
+ S L+LV A T + +M++ +A+E+SE + + H + + L +AG+ +
Sbjct: 177 TTSQLDLVVAGTADAVMMVESEAKELSEDVMLGAVLYGHTQMQAAIRAINELVAEAGRPR 236
Query: 284 KEYKLSMISEQTLEKVSNLAEA--HIEAVFTDPSYSKFERGE---ALDKIGQDVKKAL-- 336
+ Q + ++L A EA D +Y+ ++GE ALD I +D AL
Sbjct: 237 WNW-------QPTAEAADLTTAIGAYEARVVD-AYAVTDKGERYGALDAIRKDAVAALIA 288
Query: 337 --EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHG 394
+ DE S++ A + RV+R RII R+DGR VRPI + G LP HG
Sbjct: 289 GEDARYDEGSVK---DAFFNLESRVVRNRIIDGQPRIDGRDTRTVRPISIDVGVLPRTHG 345
Query: 395 SSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRR 454
S+LF+RG+TQVL TLG +AQ ++++ G FMLHY+FPP+ + E G+ RR
Sbjct: 346 SALFTRGETQVLAVATLGTGKDAQLIDAVGGEYRDTFMLHYNFPPYSVGETGRLNAPKRR 405
Query: 455 EVGHGTLAEKALLAVLPP-ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQ 513
E+GHG LA++ + VLP E DFPY VRV SEV S+GS+SMA+VCG +ALMDAG+P++
Sbjct: 406 EIGHGRLAKRGVAGVLPDLEKDFPYVVRVVSEVTESNGSSSMASVCGSCLALMDAGVPVK 465
Query: 514 EHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKP 573
VAGV++GL+ E + Y +LTDILG EDHLGDMDFK+AG+R G+TA+Q+DIK
Sbjct: 466 TPVAGVAMGLILEGN-------RYAVLTDILGDEDHLGDMDFKVAGSRNGITALQMDIKI 518
Query: 574 AGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGP 633
G+ +I+ + L A + RL ILD M++ + APR + +PR+ T+K D +R +IG
Sbjct: 519 TGVNGEIMKQALAQALEARLHILDQMDQVLPAPRKEMSNWAPRITTIKIHPDKIREVIGK 578
Query: 634 LGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVT 692
G R I EETG I + DGT+ V A ++S + + ++ + R++EVG IY+G V
Sbjct: 579 GGVTIRSITEETGTTIDIDDDGTVKVAAVDKSAADAAIARI-LSLTRDVEVGTIYEGKVA 637
Query: 693 SVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ ++GAFV G+ GL+H+S+L+ + V +V DVV GQ + ++ + D +G I+LS+K
Sbjct: 638 KLMDFGAFVTILPGKDGLVHISQLADKRVEKVEDVVKEGQAVRVKVLEVDKQGRIRLSMK 697
Query: 753 AV 754
AV
Sbjct: 698 AV 699
>gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
Length = 700
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/702 (41%), Positives = 433/702 (61%), Gaps = 12/702 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G +TLETG +AR A AV+ MD+T V +V + D RDF PLTV+YQEK +
Sbjct: 8 FQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRP+RPLFPAGF +EVQV+A+V+S + + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEINPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A ATSAAL +S +P+ GPIG R+G I GQ+++NPT EL SDLNLV + T LM
Sbjct: 128 VAMIATSAALSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLNLVVSGTENAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE + + H + + A + + K ++ + ++ ++
Sbjct: 188 VESEAGILSEDVMLGAVVYGHEQQQVVVSAINEFAAEVARPKWDWSAPVRNDALDALIAT 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
A++ IE + K +R +AL I +VK+ L + + + + + + K V+R
Sbjct: 248 EAQSRIEEAYQ--ISDKGDRYDALKIITSEVKEKLLAADETLEAKQIGEYLHDLEKTVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR + VR + +G LP HGS+LF+RG+TQ L T TLG +AQ ++
Sbjct: 306 TRIIKGEPRIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
SL+G F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P +FPYTVR
Sbjct: 366 SLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPDLEEFPYTVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E D ++ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGD-------EFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 479 DILGDEDHLGDMDFKVAGTSEGITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDE 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS R +PR+ T+K D +R +IG GA R + EETG I + DGT+ + A
Sbjct: 539 AISEGRADISEFAPRIHTIKIPTDKIRDVIGKGGATIRALCEETGTTIEIEDDGTVKIAA 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
+ E + ++ + E+EVG IY G V + ++GAFV G+ GL+H+S++ E
Sbjct: 599 TSAEQAEDAINRIKTLTA-EVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
V +VSD + GQ++ ++ + D +G ++LS+K + + +A V
Sbjct: 658 VQKVSDYLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKKDAPV 699
>gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase [Novosphingobium aromaticivorans DSM
12444]
gi|123736106|sp|Q2G5F5.1|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium
aromaticivorans DSM 12444]
Length = 772
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 302/710 (42%), Positives = 444/710 (62%), Gaps = 26/710 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
E G + +TLETG+IAR A+GAV+ ET VL VT++K SV+ DF PLTV YQEK
Sbjct: 9 LEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAK--SVKEGQDFFPLTVHYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
A G IP + +RE E+E LV R+IDRP+RPLFP GFY+E+ V+A VLS DG+ +P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETEP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSD--LNLVYACTRE 237
DI+A A SAAL +S +P+ GPI R+G I G++++NP D ++L+D L+LV A T
Sbjct: 127 DIVAMIAASAALTISGVPFMGPIAAARVGFIEGEYVLNPKQD-VALADGRLDLVVAATDT 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
+M++ +A+E+SE ++ + AH E K + I+LAEKA K + LS + +
Sbjct: 186 AVMMVESEAKELSEDEMLGAVLFAHDEIKKVIGAIIQLAEKAAKDPWDIDLSDNTADIKK 245
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
K+ +L + A + TD S R AL++ K A EE + + V K + V
Sbjct: 246 KLKDLVGKDVAAAYKLTDKS----ARSNALNEARAKAKAAFAEEGAQTQM-VAMKTMKKV 300
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
++R I+ +G R+DGR +VRPI G LP HGSSLF+RG+TQ +CT TLG
Sbjct: 301 EADIVRGAILKDGQRIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKD 360
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
Q ++ L G + FMLHY+FPP+ + EVG+ RREVGHG LA +AL VLP + +
Sbjct: 361 AEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKEE 420
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+R+ S++ S+GS+SMATVCGG +++MDAG+P++ V+G+++GL+ E D
Sbjct: 421 FPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDK------ 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT G+T +Q+DIK AGI +I L A +GR I
Sbjct: 475 -FAVLSDILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALRQASEGRAHI 533
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGT 655
L M + + RT+ ++PR+ TL+ D +R +IG G + R+I TG ++ + D
Sbjct: 534 LGEMTKALGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEG 593
Query: 656 LTVVAKNRSVMEKVLEKVDFIIG--REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
L ++ S + ++ ++I+G E EVG IYKG V ++ ++GAFV F GG+ GL+HV
Sbjct: 594 LIKISS--SDLTQIEAAKNWILGIVEEAEVGKIYKGKVVNIVDFGAFVNFMGGKDGLVHV 651
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
SE+ +E V + +DVV GQ + ++ + D RG ++LS++ V A+++
Sbjct: 652 SEMKNERVEKPTDVVKEGQDVYVKVLEIDQRGKVRLSMRVVDQETGAELE 701
>gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial
precursor [Homo sapiens]
gi|115502437|sp|Q8TCS8.2|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
mitochondrial; AltName: Full=3'-5' RNA exonuclease
OLD35; AltName: Full=PNPase old-35; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Polynucleotide phosphorylase-like protein;
Flags: Precursor
gi|62988884|gb|AAY24271.1| unknown [Homo sapiens]
gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo
sapiens]
Length = 783
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
++ E R DGR L +R + CE LHGS+LF RG TQVLCTVT +
Sbjct: 350 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens]
gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens]
Length = 783
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
++ E R DGR L +R + CE LHGS+LF RG TQVLCTVT +
Sbjct: 350 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|418299092|ref|ZP_12910927.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens CCNWGS0286]
gi|355535386|gb|EHH04674.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens CCNWGS0286]
Length = 715
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/699 (42%), Positives = 436/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + +PD
Sbjct: 68 YAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ A SAAL LS IP+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E+ + + H ++ I+LAE A K+ +E++ S E ++
Sbjct: 188 MVESEAKELNEEIMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSALENEMLA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK--- 357
LAEA + + K R A+D + VK E E P+ + V K
Sbjct: 248 -LAEAELRDAYK--ITEKAARYAAVDAVKAKVKAHFLPEEGEAKYS--PEEIGAVFKHLQ 302
Query: 358 -RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R ++ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TLG +
Sbjct: 303 AKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP F
Sbjct: 363 EQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE
Sbjct: 423 PYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE--R 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A GR IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT
Sbjct: 536 GEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H+S+
Sbjct: 596 VKIASSSGKEIEAARKWIHSIVA-EPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 655 LASERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HTCC5015]
gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HTCC5015]
Length = 698
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/705 (40%), Positives = 441/705 (62%), Gaps = 18/705 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
+ K++F+ G +T+ETG++AR A G+V++ M++T VL T T K + F PLTV
Sbjct: 1 MTAIKKQFDFGGVPVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP ++ +REG P E+E L R+IDRPIRPLFP GF +EVQ++A+V+S +
Sbjct: 61 NYQEKTYAAGKIPGSFFKREGRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DP++ A TSAAL +S IP+ GPIG ++G G++++NP+ +L SDL L A
Sbjct: 121 PEVDPEVPAMIGTSAALSISGIPFDGPIGAAQVGYRDGEYLLNPSKTDLETSDLALTVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + LM++ +A +SE + + H + ++ LAE+ G ++ ++ + + +
Sbjct: 181 TEDAVLMVESEANCLSEDIMLGAVMFGHEKMQAVVQAVKELAEEVGTERWVFEEAEANVE 240
Query: 295 TLEKVSNLAEAHI-EAVFTDPSYSKFER-GEALDKIGQDVKKALEEECDE--ESLQVLPK 350
+ V++ A+ + EA +++R GE D + + + A EE E E V K
Sbjct: 241 LEQAVASAAQQDLGEAYTIADKMDRYQRIGEIRDAVVEQLAAAEGEEGPEADEVKSVFAK 300
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ K ++R RI+A R+DGR VRPI ++G LP HGS+LF+RG+TQ L T
Sbjct: 301 ----LEKNIVRSRILAGEKRIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG +AQ ++ L G F+ HY+FPP+C+ E G RRE+GHG LA++ + AV+
Sbjct: 357 LGTERDAQLIDDLAGEYKDNFLFHYNFPPYCVGETGFIGSPKRREIGHGKLAKRGVQAVM 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ++DFPYT+R SE+ S+GS+SMA+VCG S+A+MDAG+PL+ VAG+++GL+ E D
Sbjct: 417 PAQDDFPYTIRAVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGD-- 474
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + LE A
Sbjct: 475 -----QFAVLTDILGDEDHLGDMDFKVAGTDGGVTALQMDIKIQGITREIMAQALEEAKA 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M +E+ PR + +++PR T+K D + +IG GA R I EETG +
Sbjct: 530 GRLHILGEMAKELDKPREELSQHAPRYITVKIHPDKIGDVIGKGGATIRGITEETGASVD 589
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + E+ + V+ + EIEVG IY+G V +KE+GAFV G+ G
Sbjct: 590 IEDDGTIKIASVKAEDGERAKKMVEELTA-EIEVGKIYEGKVVGIKEFGAFVNILPGKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+++ E V V+D +S GQ++ ++ + D +G ++LS+K V
Sbjct: 649 LVHISQIAQERVENVTDHLSEGQEVRVKVLEVDRQGRVRLSMKEV 693
>gi|395785548|ref|ZP_10465280.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th239]
gi|423717553|ref|ZP_17691743.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th307]
gi|395425095|gb|EJF91266.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th239]
gi|395426953|gb|EJF93069.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th307]
Length = 734
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 297/718 (41%), Positives = 445/718 (61%), Gaps = 23/718 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E + G R + LETGK+AR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIDWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKEPKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E L+ R+IDRPIRPLF G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVTVMQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL LS +P+ GPIG R+G I GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSIVAASAALTLSGVPFMGPIGGARVGYINGQYVLNPNIDEMPESTLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A+E+ E + + ++ I+LAE A K+ +++ +S+
Sbjct: 181 GTSEAVLMVESEAQELPEDIMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFSPEDLSD 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKI-GQDVKKALEE--ECDEESLQVLPK 350
+K+ LAE + + K ER A+D + + ++K L E E + S + +
Sbjct: 241 LE-KKMLKLAEKDLRKAYQ--MTDKQERYSAVDAVKAKVIEKFLPEGVEDGDYSAEQIAT 297
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ + T
Sbjct: 298 VFKHLQAKIVRWNILDTGSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVAT 357
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+ +L
Sbjct: 358 LGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPML 417
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PLQ VAG+++GL+ E
Sbjct: 418 PAKESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLQRPVAGIAMGLIKE---- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L+ A
Sbjct: 474 -GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALDQAKG 530
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M + ++ R + +PR+ + + +R +IG G + R+I E+TG +I+
Sbjct: 531 GRIHILGEMAKALTGARAELGEFAPRIEMMNIPVEKIRDVIGSGGKVIREIVEQTGAKIN 590
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + ++ + II E EVG IY+G V ++GAFV F G + G
Sbjct: 591 IEDDGTVKIASSDAKTIDAAKRWIHSII-DEPEVGEIYEGTVVKTADFGAFVNFFGPRDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS-------PRPEA 760
L+H+S+LS E V++ +DVV GQ++ ++ +G D RG ++LS+K V PR EA
Sbjct: 650 LVHISQLSPERVAKTTDVVQDGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIPRDEA 707
>gi|395778736|ref|ZP_10459248.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
Re6043vi]
gi|423714950|ref|ZP_17689174.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
F9251]
gi|395417944|gb|EJF84281.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
Re6043vi]
gi|395430434|gb|EJF96476.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
F9251]
Length = 731
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/707 (41%), Positives = 438/707 (61%), Gaps = 20/707 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E LV R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A SAAL LS +P+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIAASAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H ++ I+LAE A K +++ +S+
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVIDAIIKLAEVAAKDPRDFVPEDLSD 240
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQVL 348
LEK + +AE I +T K ER A+D + +V E++C + Q+
Sbjct: 241 --LEKAMQEMAEQGIRKAYT--ITDKQERYAAIDALKTEVVHKFIPETEDDCQFSADQI- 295
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 296 ATVFKQLQAKIVRGNILDTERRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVV 355
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 356 ATLGTGEDEQYVDALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHP 415
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 416 MLPTKESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE-- 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A
Sbjct: 474 ---GE--RFAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQA 528
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR+ IL M + +++ RT+ SPR+ + D +R +IG G + R+I E+TG +
Sbjct: 529 KDGRIHILHEMGKALTSARTELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK 588
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I++ DGT+ + + + +E + I+ E EVG IY+G V ++GAF+ F G +
Sbjct: 589 INIEDDGTIKIASADAKTIEAAKRWIHSIVD-EPEVGAIYQGTVVKTADFGAFINFFGSR 647
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG ++LS+K V
Sbjct: 648 DGLVHISQLASERVTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|349687343|ref|ZP_08898485.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
oboediens 174Bp2]
Length = 711
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 303/719 (42%), Positives = 441/719 (61%), Gaps = 33/719 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ F++E E G R + LETGKIAR A+GAVV+ +T VL T +K SV+ DF P
Sbjct: 1 MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK +A G IP + +REG P E E+L R+IDRPIRPLFP F +EVQV+A+VL
Sbjct: 59 LTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP ++A SAAL LS IP+ GP+G R+G G++++NPT+ +L S+L+LV
Sbjct: 119 SHDMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T E LM++ +A E+SE+ + + H ++ I LAE A K +
Sbjct: 179 VAGTSEGVLMVESEAVELSEEVMLGAVTFGHEAFQPVIDAIIDLAESAAKAPWDLAEPTA 238
Query: 292 SEQTL-EKVSNLAEAHIEAVFTDPS----YSKFE--RGEALDKIGQDVKKALEEECDEES 344
E L +KV + A I + + + Y K R L KIG+D D ++
Sbjct: 239 EEIKLRKKVDKVGRALIADAYKERTKQVRYKKVAAARDAILAKIGED---------DADA 289
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
+ + K ++ V+R ++ G R+DGR L+ +RPI E G LP HGS+LF+RG+TQ
Sbjct: 290 AKPMIKDLEA---DVVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQ 346
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TLG + Q +++L G FMLHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 347 ALVVATLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWR 406
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP ++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+
Sbjct: 407 AIHPLLPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLI 466
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E + D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+
Sbjct: 467 KEDE-------DFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIA 519
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L A +GRL IL M + ++ R+ ++P++ T+ + +R +IG G + R+I E
Sbjct: 520 LGQARQGRLHILGEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEY 579
Query: 645 TGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
+G +I ++ DGT+ + A + EK +E++ I E EVG IY G V ++GAFV F
Sbjct: 580 SGAKIDINDDGTIMIAASSDDQAEKAIERIRGITA-EPEVGHIYNGKVVKTADFGAFVNF 638
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ VS+ +DVV G ++ ++ +G D RG +KLS++ V AD+
Sbjct: 639 LGPRDGLVHISELAQGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQETGADI 697
>gi|414341474|ref|YP_006982995.1| polynucleotide phosphorylase [Gluconobacter oxydans H24]
gi|411026809|gb|AFW00064.1| polynucleotide phosphorylase [Gluconobacter oxydans H24]
Length = 716
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 311/718 (43%), Positives = 444/718 (61%), Gaps = 29/718 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + F++E E R + LETGKIAR A+GAV++ +T VL T +K SV+ DF P
Sbjct: 1 MFDYFRKEIEWAGRPLILETGKIARQADGAVMVTYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK +A G IP + +REG P E E+L R+IDRP+RPLFP F +EVQV A+VL
Sbjct: 59 LTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPLRPLFPENFRNEVQVTATVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP I++ SAAL LS IP+ GP+G RIGRI G+F+VNPT+ E+ S L+LV
Sbjct: 119 SHDMENDPAIVSLIGCSAALTLSGIPFFGPVGAARIGRIDGKFVVNPTLSEVKDSTLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY----K 287
A T E LM++ +A E+SE+ + + L H +E I LAE A K + K
Sbjct: 179 VAGTSEGVLMVESEASELSEETMLEAVTLGHTSFQPVIEAIIALAEHAAKAPWDLPSLTK 238
Query: 288 LSMISEQTLEKVSN--LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + +EKV N +A+A+ E V Y K EA D+I + + EE D E
Sbjct: 239 EEIALRKRVEKVGNKLMADAYKERV-KQARYKKV--AEAKDRINEILA---EEGFDVELA 292
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ + K ++ +V+R I+ G+R+DGR L VRPI E G LP HGSSLF+RG+TQ
Sbjct: 293 KPMLKELEA---QVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQA 349
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG + Q +++L G F+LHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 350 LVVATLGTGQDEQIIDALEGEYRSNFLLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRA 409
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
L +LP + FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 410 LHPLLPSKEQFPYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIK 469
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E + + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+ L
Sbjct: 470 -------EDRGFAVLSDILGDEDHLGDMDFKVAGTDQGITALQMDIKITSITPEIMQIAL 522
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + ++ R N+P++ T+ + +R +IG G + R+I E +
Sbjct: 523 EQARGGRIHILGEMAKALTEGRDDVSGNAPKITTMSVPKEKIRDVIGSGGKVIREIVEYS 582
Query: 646 GGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G ++ + DGT+T+ A N +K + +++ I+ E E+G IY G V ++GAFV F
Sbjct: 583 GAKVDIGDDGTITIAASNDEQAQKAIARIEGIVA-EPEIGRIYDGKVVKTADFGAFVNFL 641
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ V++ SDVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 642 GPRDGLVHISELTQGRVAKTSDVVQQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADI 699
>gi|357026478|ref|ZP_09088578.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium amorphae
CCNWGS0123]
gi|355541593|gb|EHH10769.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium amorphae
CCNWGS0123]
Length = 715
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/704 (42%), Positives = 440/704 (62%), Gaps = 24/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ETKVL+TV S K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLVLETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ Q++ +V+ D + D
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ ATSAAL LS +P+ GPIG R+G I G++++NP +DE+ S L+LV A T +
Sbjct: 126 PDILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHVDEMQESKLDLVVAGTTDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSMISEQT 295
LM++ +A+E+ E + + H ++ I+LAE A K +++ S + +
Sbjct: 186 VLMVESEAKELGEDLMLGAVMFGHKGFQPVIDAIIKLAEVAAKDPRDFTAPDYSALEGEM 245
Query: 296 LEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKA 351
L+ V N L +A+ TD K +R A+D + VK A E E + + + +
Sbjct: 246 LKIVENELRDAY---KITD----KQKRYAAVDAVKAKVKAAFTPAEGEDAKYTSEQIGSV 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L TL
Sbjct: 299 FKELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G ++F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 359 GTGEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 419 TADQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE----- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A G
Sbjct: 474 GE--RFAVLSDILGDEDHLGDMDFKVAGTANGITSLQMDIKIDGITEEIMQIALGQAKDG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M +S R + +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 532 RLHILGEMAHALSGARAELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKIASSNAKEIEAAKKWIHTIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+++ V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLANDRVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|423389886|ref|ZP_17367112.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
gi|423418286|ref|ZP_17395375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|401106559|gb|EJQ14520.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|401641977|gb|EJS59694.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
Length = 712
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/694 (41%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMFGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKLAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++++ + V + E +E D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|420242139|ref|ZP_14746214.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF080]
gi|398068460|gb|EJL59884.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF080]
Length = 710
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/715 (41%), Positives = 440/715 (61%), Gaps = 19/715 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHSVEIEWAGRPLRLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ +A+E++E + + H ++ I+LAE A K+ +E++ SE
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPS--YSKFERGEALDKIGQDVKKALEEECDE--ESLQVLP 349
E + H EA + K +R A+D + VK E E + +V+
Sbjct: 241 LEAEMLQ-----HFEAELREGYKITQKADRYAAVDAVKAKVKAHFFPEGVEPKYNAEVIG 295
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 296 AVFKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVA 355
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +
Sbjct: 356 TLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPM 415
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 416 LPTVEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE--- 472
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A
Sbjct: 473 --GE--RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQ 528
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR IL M I+ R Q +PR+ + D +R +IG G + R+I E+TG +I
Sbjct: 529 GGRKHILGEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKI 588
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DGT+ + + + +E + + I+ E EVG IY+G V ++GAFV F G +
Sbjct: 589 NIEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGAIYEGTVVKTADFGAFVNFFGARD 647
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
GL+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V +VK
Sbjct: 648 GLVHISQLASERVAKTQDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGQEVK 702
>gi|384209594|ref|YP_005595314.1| polynucleotide phosphorylase/polyadenylase [Brachyspira intermedia
PWS/A]
gi|343387244|gb|AEM22734.1| polynucleotide phosphorylase/polyadenylase [Brachyspira intermedia
PWS/A]
Length = 706
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/697 (41%), Positives = 451/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 4 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 62
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 63 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALAL 122
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL+ S+L+++ A +++ LMI+
Sbjct: 123 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELATSELDIIVAGSKDAILMIEG 182
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+A+E+SE+ + LAH E KY++ Q +A G QK + +L + ++ V+
Sbjct: 183 EAKEVSEEVFIGAIELAHKEMQKYIDMQNEMATLCGTQKIQQELFEFDAELVKMVTEYGR 242
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
IEA +P +K R E++D ++++ ++ + ++E L K + ++ + ++R+
Sbjct: 243 NKIEAANYNPDKTK--RNESMDNAFDEIEEYIKTQVEDEKLISQVKGICHSIEEEIVREA 300
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ +G+R DGR LDE+RPI + +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 301 IVEKGMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 360
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLPP++ FPYT+RV
Sbjct: 361 YGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVV 420
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y+ILTDI
Sbjct: 421 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKILTDI 473
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD ++ I
Sbjct: 474 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATI 533
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
+ D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 534 ANAGEISDF-APKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPD 592
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K ++ ++ + ++ EVG +Y G+V +K++GAFVE G +GL H+SEL+++ V
Sbjct: 593 TPTLDKTIKLINSYV-KDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVM 651
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ + D++ G LS KA+ +P
Sbjct: 652 NVEEVLKIGDEVKVKIL--DIKGGKYSLSRKALLEKP 686
>gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Pan troglodytes]
gi|410225708|gb|JAA10073.1| polyribonucleotide nucleotidyltransferase 1 [Pan troglodytes]
gi|410254094|gb|JAA15014.1| polyribonucleotide nucleotidyltransferase 1 [Pan troglodytes]
gi|410289028|gb|JAA23114.1| polyribonucleotide nucleotidyltransferase 1 [Pan troglodytes]
gi|410338071|gb|JAA37982.1| polyribonucleotide nucleotidyltransferase 1 [Pan troglodytes]
Length = 783
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
++ E R DGR L +R + CE LHGS+LF RG TQVLCTVT +
Sbjct: 350 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|430005880|emb|CCF21683.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium sp.]
Length = 717
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/707 (41%), Positives = 439/707 (62%), Gaps = 21/707 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHSVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ ATSAAL LS +P+ GPIG R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ S
Sbjct: 181 GTQDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFQPEDHSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSY---SKFERGEALDKIGQDVKKALEEECDEESL--QVL 348
E + H EA D +Y K +R A+D + VK E E +V+
Sbjct: 241 LEAEMLQ-----HFEAELRD-AYKITQKADRYAAVDAVKAKVKAHFFPEGMEPKYTPEVI 294
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 295 GAVFKHLQAKIVRWNILDTKNRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVV 354
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+
Sbjct: 355 ATLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRP 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+P+ + VAG+++GL+ E
Sbjct: 415 MLPTAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLILE-- 472
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A
Sbjct: 473 ---GE--RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR IL+ M I+ R Q +PR+ + D +R +IG G + R+I E+TG +
Sbjct: 528 QGGRKHILNEMANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK 587
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I++ DGT+ + + + +E + + I+ E EVG +Y+G V ++GAFV F G +
Sbjct: 588 INIEDDGTVKIASSSGKEIEAARKWIHSIVA-EPEVGAVYEGTVVKTADFGAFVNFFGAR 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ + V++ +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 647 DGLVHISQLAADRVAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|384228360|ref|YP_005620095.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
gi|345539293|gb|AEO08160.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
Length = 696
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 281/702 (40%), Positives = 443/702 (63%), Gaps = 12/702 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+L +F+ G ITLETG +AR A AV+ MD+T V TV K S + F PLT
Sbjct: 1 MLNPIIRKFQYGQHTITLETGVMARQATAAVMASMDDTAVFVTVVGQKKIYSGQKFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP + RREG P E E+L+ R+IDRPIRPLFP F +EVQ++ +V+S
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSENEILIARLIDRPIRPLFPKNFLNEVQIIVTVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI++ SAAL LS IP+ GPIG R+G I Q+I+NP D++ S L+LV +
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPIGAARVGLINNQYILNPISDDIKNSSLDLVIS 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +++ +SE+ + + H + + + +A K I++
Sbjct: 181 GTQNAILMVEAESKILSEEQMLGAIIFGHQQQQVVINNIRSFSNEASKLPWVMSYPEINK 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
K+++L++ +I + ++K ER E L+ I ++V K E+ + V+ +
Sbjct: 241 ILESKITSLSQQNISNAYL--IFNKQERFEKLNNIKEEVIKVCLEDDLNVDILVIEDILQ 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K+++RKRI+ +R+DGR+ D +R + +G LP HGS+LF+RG+TQ L VTLG
Sbjct: 299 NIEKKIVRKRILNHQIRIDGREKDMIRALDIRTGILPRTHGSALFTRGETQSLVAVTLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ L+G + F+ HY+FPP+ + E+G RRE+GHG LA+++LLAV+P
Sbjct: 359 SRDAQNLDELLGDRIENFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMPTL 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
NDFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL+ E
Sbjct: 419 NDFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLIKEG------ 472
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
K Y +L+DILG EDHLGDMDFK+AGT+ G+T++Q+D+K GI +II L A RL
Sbjct: 473 -KKYVLLSDILGDEDHLGDMDFKVAGTKEGITSLQMDMKIEGITHEIIHTALNEARSARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL+ M + +S R++ +PR+ T+K + + ++ +IG G++ R + EETG I +
Sbjct: 532 HILNVMNQALSKSRSEISEFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + R + +++ I EIEVG IY G VT + ++GAFV G++GL+H
Sbjct: 592 DGTVKISSSVRERANNAIRRIEEITA-EIEVGRIYSGKVTRIVDFGAFVSIGVGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S++S + V +VS+ + + Q +S++ + D +G ++LS+K +
Sbjct: 651 ISQISKKRVDKVSNHLRLDQVISVKVLEIDRQGRLRLSIKEI 692
>gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
Length = 710
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 439/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + + E + G R + LETGKIAR A+GAV+ ETKV++TV S+K +DF PLT
Sbjct: 1 MFDIHRVEVDWGGRPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E E L R+IDRPIRPLF G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + PDI+A A SAAL LS +P+ GPIG R+G I G++++NP +D++ S L+LV A
Sbjct: 121 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A+E+ E + + ++ I+LAE A K+ +E L SE
Sbjct: 181 GTSEAVLMVESEAKELDEDTMLGAVVFGQKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ--VLPKA 351
+ +AE ++A + SK ER A+D V +A+ E + + + V+ +
Sbjct: 241 -LFGTIKGIAEDDLKAAYK--ITSKTERKNAIDAAKAKVVEAVIENGGDAAPEATVVGEL 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ ++R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L TL
Sbjct: 298 FKKLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++ L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQFVDLLQGTMKEHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E D
Sbjct: 418 AHHEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK GI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGSENGITSLQMDIKIDGITEEIMKVALAQAKDG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M I+ R++ ++PR+ LK D +R +IG G + R+I E+TG ++++
Sbjct: 531 RIHILGEMANAITEARSELGEHAPRIEMLKIPVDKIREVIGSGGKVIREIVEKTGAKVNI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V + + ++ + ++ I E EVG IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKVASSDGKAIKAAVNWINS-IAAEPEVGVIYEGTVVKCVDFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ + V++V+DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLAPKKVAKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
21756]
gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
21756]
Length = 712
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 438/705 (62%), Gaps = 26/705 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + + LETG+IAR A+GAV+ M ET VL+T +K +DF PLTV+YQE
Sbjct: 6 RKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL D + D
Sbjct: 66 KTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ A SAAL LS P+ GPIG R+G + G +++NPT+DE+ S ++LV A T +
Sbjct: 126 PDILGMVAASAALTLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E+SE+ + G+ AH + ++ I LAE A K+ ++ ++ +
Sbjct: 186 VMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPED-TDAIKAE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE--ECDEESLQVLPKAVDTVR 356
+ + A I A Y ++ + + IG KKA+E + D P+ + +
Sbjct: 245 MKGIVGADIAA-----GYKITKKQDRYEAIGNAKKKAIEALGKSDTNPAGYDPQKLAAIF 299
Query: 357 KR----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
K V+R+ I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 KELEADVVRRGILDTGLRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +AL +LP
Sbjct: 360 TGDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPS 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E D
Sbjct: 420 KEDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEKD---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A +GR
Sbjct: 476 ---GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPQIMEQALAQAKEGR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + + APR +P++ T+ D +R +IG G + R+I TG ++ ++
Sbjct: 533 AHILGEMNKAMDAPREDVGDFAPKIETITIPTDKIREVIGSGGKVIREIVATTGAKVDIN 592
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
DG + V A + + K+ +D+I I E EVG IY G V V ++GAFV F G + G
Sbjct: 593 DDGIVKVSASDGA---KIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDG 649
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 650 LVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVV 694
>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
Length = 689
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/698 (42%), Positives = 442/698 (63%), Gaps = 14/698 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+E F + ++ R +T+ETG++A+ A GAV++G +T+VL T T SK DF PLTVD
Sbjct: 1 MEQF--QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVD 58
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK +A G +P +++RE P E +L R+IDRPIRPLF G +EV V+A+V+S D
Sbjct: 59 YEEKMYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQ 118
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
DP I SAAL +SDIPW GPI +R+GRI G+FIVNPT ++L +DLN+V A T
Sbjct: 119 DCDPAICGMIGASAALSISDIPWNGPIAGVRMGRINGEFIVNPTKEQLEATDLNIVVAGT 178
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
++ LM++ A+E+ E+ + + AH E K + Q + K GK+K+ ++ + +
Sbjct: 179 KDAILMVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEI 238
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
E V ++A K +R ++ DV EE ++L + KA D +
Sbjct: 239 AEAVRAYGHDKLDAAVR--CADKQQRDAQESEVRADVLAHF-EEIYPDNLADVNKAFDAM 295
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K ++R I E +R DGR+LDEVRPI C +G LP HGS LF+RG TQVL T+ +
Sbjct: 296 TKEIVRHMITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLS 355
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
E Q ++ + KR++ HY+FP F + E G RRE+GHG LAE+AL+ V+P E +
Sbjct: 356 ETQTIDGIGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEE 415
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+SMA+VCG +++LMDAG+P++ VAG+++GLV++ GE
Sbjct: 416 FPYALRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQ-----GE-- 468
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +G+ +I+ E LE AHKGR+ I
Sbjct: 469 HYTILTDIQGMEDALGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHI 528
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
+ M I+ PR Q + +PR+ T+K D D +R +IG G + R I +ETG +I + DG
Sbjct: 529 MGIMLDTIAEPRQQMSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIDETGAKIDIEDDG 588
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + + ++ K + ++ + +E+EVG +Y G VT + +GAFVE G++GL+H+S
Sbjct: 589 TVFIASVDQEGAAKAQQIIENLT-KEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHIS 647
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+L+ E V V DVV+VG ++ ++ I D +G I LS K
Sbjct: 648 KLAKERVENVEDVVNVGDEIMVKVIEIDKQGRINLSRK 685
>gi|359787085|ref|ZP_09290154.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. GFAJ-1]
gi|359295622|gb|EHK59886.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. GFAJ-1]
Length = 720
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 299/706 (42%), Positives = 436/706 (61%), Gaps = 22/706 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MDET VL TV + K + + F PL+V YQE
Sbjct: 11 KKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVAKKEANPNQPFFPLSVHYQE 70
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 71 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHD 130
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PD+ A TSAAL +S +P+ GPIG R+G Q + +NPT++EL+ S+L++V A T +
Sbjct: 131 PDVAAMLGTSAALSISGVPFNGPIGCARVGFNEEQGYFLNPTVEELAASELDMVVAGTDK 190
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E ++ + H E + L +AGK + +++ + + +
Sbjct: 191 AVLMVESEAQELLEDEMLGAVLFGHQEMQVAVTAIKELVAEAGKPRWDWQPA---PENVA 247
Query: 298 KVSNLAEAHIEAVFTDPS--YSKFERGEALDKIGQDVKKALEEECDEESLQVLPK----- 350
+ +AEA EA D K R +AL + + L EE+ K
Sbjct: 248 LKTAMAEA-FEAKVGDAYRITDKMARQDALSALKDAAVEQLAAVEGEEAEGKFSKDDVKG 306
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A + KRV+R R++ R+DGR VRP+ E G LP HGS++F+RG+TQ + T
Sbjct: 307 AFAGLEKRVVRSRVVKGEPRIDGRDNSTVRPLAIEVGVLPKTHGSAVFTRGETQAIAIAT 366
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG ++Q +ESL G RFMLHY+FPP+C+ E G G RRE+GHG LA + + A+L
Sbjct: 367 LGTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGIQAML 426
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E+ FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 427 PSEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDED-- 484
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
Y +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ + L+ AH
Sbjct: 485 -----GYAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMEKALQQAHD 539
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R+ IL M IS RT N+P +AT+K D +R +IG GA RKI E+TG I
Sbjct: 540 ARISILAQMNDVISQSRTDVSENAPSMATIKIAPDKIRDVIGKGGATIRKICEDTGASID 599
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A++++ ++ ++ V I E E+G +Y G V + ++GAFV G G
Sbjct: 600 LDDDGTVRIYAEDKAAAKRAIDTV-LAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTDG 658
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
L+H+S++ E V+ V D ++ G + ++ + D R +KLS+K ++
Sbjct: 659 LVHISQIVAERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSIKEIT 704
>gi|343494423|ref|ZP_08732685.1| polynucleotide phosphorylase/polyadenylase [Vibrio nigripulchritudo
ATCC 27043]
gi|342825328|gb|EGU59827.1| polynucleotide phosphorylase/polyadenylase [Vibrio nigripulchritudo
ATCC 27043]
Length = 707
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/703 (41%), Positives = 437/703 (62%), Gaps = 20/703 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +T+ETG IAR A AV++ MD+T V +V K ++V +DF PLTV+YQE+
Sbjct: 8 FQYGNHTVTIETGAIARQATAAVMVNMDDTAVFVSVVGKK-EAVEGQDFFPLTVNYQERT 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + PD
Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPD 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I TSAAL +S IP+ GPIG R+G I GQ ++NP+ EL S L+LV A T L
Sbjct: 127 IPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVVAGTDNAVL 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+++ + + H + + A + E++ + + +V+
Sbjct: 187 MVESEADNLTEEEMLSAVVYGHDQQQAVITAIKEFAAEVATPAWEWEAPAENTELKARVA 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRK 357
LA + E + K R E + I +V +AL +EE DE ++ + + ++ K
Sbjct: 247 ELAVSRFEEAYQ--ITEKMARYEQVGTIKNEVVEALLAQDEELDEREIRGM---LGSLEK 301
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
V+R RIIA R+DGR+ D VR + ++G LP HGSSLF+RG+TQ L T TLG +A
Sbjct: 302 NVVRSRIIAGNPRIDGREKDMVRALDVQTGVLPRTHGSSLFTRGETQALVTATLGTQRDA 361
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FP
Sbjct: 362 QIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFP 421
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+
Sbjct: 422 YTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGD-------DF 474
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
+L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL
Sbjct: 475 VVLSDILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILS 534
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
M++ IS R +PR+ T+K + D ++ +IG GA+ R + EETG I + DGT+
Sbjct: 535 VMDQAISGAREDISEFAPRIHTMKINADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTI 594
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ A + ++ + +++ I E+EVG IY G VT + ++GAFV GG++GL+H+S++
Sbjct: 595 KIAATEGTAAKEAIRRIEEITA-EVEVGTIYTGKVTRIVDFGAFVAVLGGKEGLVHISQI 653
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+ + + +V+D +S GQ++ ++ + D + I+LS+K + E
Sbjct: 654 ADKRIEKVADHLSEGQEVKVKVLEIDRQNRIRLSMKEAVEKTE 696
>gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS185]
gi|187611290|sp|A6WRG3.1|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS185]
Length = 700
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/700 (40%), Positives = 440/700 (62%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D+ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NP++ +L+ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK ++ + ++
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDADLVAQIKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL L+ + + ++ K+V+R
Sbjct: 248 LAEAGLGDAYK--IQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ +K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKEAA 697
>gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
SXCC-1]
gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
SXCC-1]
Length = 761
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 305/723 (42%), Positives = 440/723 (60%), Gaps = 33/723 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ F++E E G R + LETGKIAR A+GAVV+ +T VL T +K SV+ DF P
Sbjct: 50 MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAK--SVKPGQDFFP 107
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV+YQEK +A G IP + +REG P E E+L R+IDRPIRPLFP F +EVQV+A+VL
Sbjct: 108 LTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVL 167
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP ++A SAAL LS IP+ GP+G R+G G++++NPT+ +L S+L+LV
Sbjct: 168 SHDMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLV 227
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T E LM++ +A E+SE + + H ++ I LAE A K +
Sbjct: 228 VAGTSEGVLMVESEAVELSEDVMLGAVTFGHEAFQPVIDLIIDLAESAAKAPWDLAEPTA 287
Query: 292 SEQTL-EKVSNLAEAHIEAVFTDPS----YSKFE--RGEALDKIGQDVKKALEEECDEES 344
E L +KV A I + + + Y K R L KIG E D ++
Sbjct: 288 EEIKLRKKVDKAGRALIAEAYKERAKQVRYKKVAAAREAILAKIG---------EADADA 338
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
+ + K ++ V+R ++ G R+DGR L+ +RPI E G LP HGS+LF+RG+TQ
Sbjct: 339 AKPMIKDLEA---DVVRTEVLDTGYRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQ 395
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TLG + Q +++L G FMLHY+FPPF + E G+ RRE+GHG LA +
Sbjct: 396 ALVVATLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWR 455
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP ++ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+
Sbjct: 456 AIHPLLPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLI 515
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E D D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+
Sbjct: 516 KEED-------DFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIA 568
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L A +GRL IL M + ++ R+ ++P++ T+ + +R +IG G + R+I E
Sbjct: 569 LGQARQGRLHILGEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEY 628
Query: 645 TGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
+G +I ++ DGT+ + A + EK +E++ I E EVG IY G V ++GAFV F
Sbjct: 629 SGAKIDINDDGTIMIAASSDDQAEKAIERIRGITA-EPEVGHIYNGKVVKTADFGAFVNF 687
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
G + GL+H+SEL+ VS+ +DVV G ++ ++ +G D RG +KLS++ V + AD+
Sbjct: 688 LGPRDGLVHISELAEGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQKTGADIT 747
Query: 764 GVV 766
V
Sbjct: 748 DTV 750
>gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase [Paenibacillus polymyxa
E681]
gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Paenibacillus polymyxa E681]
Length = 700
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/697 (41%), Positives = 438/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV + ET VL TVT+S+ DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P ++ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ GQF++NP + + + SDL LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV-S 300
++ + EI E+ + + H E + +L + AGK+K + KL + E+ +V +
Sbjct: 186 VEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEVRA 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
AE +EAV K R EA+D + ++ E + E E L + + + + K
Sbjct: 246 YAAERLMEAV---KIAEKHARQEAIDAVNEETVAHFESQYIETPELLSDVSEVLYDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR+LDE+RPI ++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ + L+ A +GRL IL
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKINGIDRQILQDALKQAKEGRLFILSK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR Q +P++ T+ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MMEAIQKPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ + EK ++ I+ +E+ VG IY G V ++++GAFVE G+ GL+H+S+LS
Sbjct: 596 IASTNQEMNEKARSIIEGIV-KEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DV+++G ++++ D +G + LS KAV
Sbjct: 655 TERVAKVEDVIAIGDTITVKVTEIDQQGRVNLSRKAV 691
>gi|440509689|ref|YP_007347125.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
chromaiodes str. 640]
gi|440453902|gb|AGC03394.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
chromaiodes str. 640]
Length = 699
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/709 (40%), Positives = 448/709 (63%), Gaps = 24/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+L+ +F+ G + L+ G IAR AN AV++ M +T VL TV SS + VR DF P
Sbjct: 1 MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSS--NQVRLEQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
L V+YQE+ +A G P + RREG P E E+L R+IDRPIRPLFP GF ++VQV+A+V+
Sbjct: 59 LVVNYQERTYAAGKFPGGFFRREGRPSENEILTSRLIDRPIRPLFPKGFINDVQVVATVV 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S + + +PDI+A SAAL LSDIP+ GPIG R+G I Q+++NPT ELS S L+LV
Sbjct: 119 SVNPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTATELSNSKLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
+ T LM++ ++ +SEK++ + H + + +L +K GK K + +
Sbjct: 179 ISGTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEV 238
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-----EEECDEESLQ 346
+ +S L E+ + ++ + K ER +D I +D+ K + DE+ +
Sbjct: 239 NISLKTYLSELYESRAQDIYC--FFDKKERHAQVDSIKKDIVKTVLNSYQHAAVDEKEIM 296
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
L ++ + + IR RI+ +R+DGR D +R I ++G LP HGS+LF+RGDTQ L
Sbjct: 297 YL---LNYLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQAL 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
VTLG +AQ ++ L G RF+LHY+FPP+C+ E+G RRE+GHG LA++ +
Sbjct: 354 VAVTLGTERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGM 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
LAV+P N+FPYT+RV SE+ S+GS+SMA++CG S+ALMDAG+P++ VAGV++GL+ E
Sbjct: 414 LAVMPNANEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKASVAGVAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
+ D+ +L+DI+ EDH+GDMDFK++G+R G+TA+Q+DIK GI DII L+
Sbjct: 474 GN-------DFVVLSDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALK 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A RLQILD ME+ I P + + +PR+ ++K + D ++ +IG G++ R + EET
Sbjct: 527 KAKNARLQILDVMEQIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETN 586
Query: 647 GRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
I + D G + +VA + ++ + +++ I +E+G +Y G V+ + E+GAFV
Sbjct: 587 TIIDIEDNGIIKIVALDYDKAKQAIRRINDITA-NVEIGAVYTGKVSHIVEFGAFVTILS 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G++GL+H+S++S +++V+D + +GQ++ ++ + D +G I+LS+K V
Sbjct: 646 GKEGLVHISQISERRINKVTDYLKLGQKVLVKVLEIDRQGRIRLSMKGV 694
>gi|392389743|ref|YP_006426346.1| polyribonucleotide nucleotidyltransferase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390520821|gb|AFL96552.1| polyribonucleotide nucleotidyltransferase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 710
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/713 (41%), Positives = 454/713 (63%), Gaps = 20/713 (2%)
Query: 57 ETFKEEFEI-GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK--GDSVRDFLPLT 113
+ F EE + R ITL TGK+A+ A+GAVV+ M T +L+TV +K D V DF+PLT
Sbjct: 5 QEFTEEIRLKDGRSITLSTGKLAKQADGAVVVKMGGTMLLATVVGAKEAKDGV-DFMPLT 63
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+EK A G IP +++REG P + E+L R++DR +RPLFP ++ EVQV+ SV+S
Sbjct: 64 VEYREKFSAAGKIPGGFIKREGRPTDDEILTMRLVDRVMRPLFPKDYHAEVQVIISVMSY 123
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DG PD +A A S A+ L+DIP+ I +R+ R+ G+ ++NP ++ L +DL+++
Sbjct: 124 DGTVIPDSLAGLAASTAMALTDIPFKSLISEVRVVRVDGELLINPDLETLKKADLDIMVG 183
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ--KKEYKLSMI 291
+++ +M++ + EISEK++ ++ AH + +E Q RLAEK GK K+EY +
Sbjct: 184 ASKDSVVMVEGEMNEISEKEMVEAIKFAHEAIKEQIEAQERLAEKVGKSFPKREYCHEVN 243
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
E +++ + + V +PS K ER E D + + K EE EE ++ K
Sbjct: 244 DEALEQRIHDELYQKLYDVAKEPS-DKHERSEKFDAVLAEFKAQFSEEELEEKEALIDKY 302
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+K +R+ I+ E VR+DGR E+RPI+CE LP HGSS+F+RG+TQ L TVTL
Sbjct: 303 FGDTKKEAVRQMILNENVRLDGRNPKEIRPIWCEVDYLPATHGSSIFTRGETQSLSTVTL 362
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G+ + R++S+V K+F LHY+FPPF E G +RREVGHG LAE+AL ++P
Sbjct: 363 GSSLDVDRIDSIVEEYDKKFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAERALKKMIP 422
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+N PYT+R+ SE++ S+GS+SMATVC G++ALMDAGI +++ V+G+++GL++ D +
Sbjct: 423 ADN--PYTIRLVSEILESNGSSSMATVCAGTLALMDAGIKIKKPVSGIAMGLIT--DTES 478
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
G+ + +L+DILG EDHLGDMDFK+ GTR G+TA Q+DIK AG+ +I+ + L AH+G
Sbjct: 479 GK---WTVLSDILGDEDHLGDMDFKVTGTRDGITACQMDIKIAGLSYEILEKALMQAHEG 535
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ ILD + I P +P++ TL+ D + +IGP G + ++++ ETG IS+
Sbjct: 536 RMHILDKILETIPEPNENYKPTAPKIVTLRIKGDFIGAVIGPGGKVIQELQAETGTTISI 595
Query: 652 SD----GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
+ G + + +++ M+ ++++ I E E+GG+YKG V S+K +GAFV+ G
Sbjct: 596 EEDGDFGVVEISGVDQNGMDAAVQRIKDIT-FEPEIGGVYKGTVVSIKPFGAFVQIKKGV 654
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRPE 759
+GL+H+SEL V+ V DVV VG ++ ++ + D + G ++LS K + P+PE
Sbjct: 655 EGLVHISELEWSRVNDVEDVVKVGDEIEVKYLENDKKTGKMRLSRKVLLPKPE 707
>gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
ATCC 25976]
gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
ATCC 25976]
Length = 707
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/697 (41%), Positives = 437/697 (62%), Gaps = 13/697 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTV+YQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRPIRPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAVGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG RIG I QF++NPT+ E S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + V
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDVIKADVIAQLTAQDETISEGAIVDIITALESSV 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+A R+DGR +D VR + +G L HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRILAGEPRIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
+ I AP D +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 GQAIPAPADISD-FAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 595
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG V V ++GAFV GG++GL+H+S++++
Sbjct: 596 AATDNNAAKTVMARIEDIVA-EVEVNAIYKGKVIRVVDFGAFVSILGGKEGLVHISQITN 654
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
E V RV+D ++VGQ+++++ + D + I+L++K ++
Sbjct: 655 ERVERVADYLNVGQEVAVKVVEIDRQNRIRLTMKDIN 691
>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
alkaliphilus HTCC2654]
gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
alkaliphilus HTCC2654]
Length = 716
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/706 (41%), Positives = 442/706 (62%), Gaps = 26/706 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ + G +TLETGK+AR A+G V+ + ET V++ VT +K +DF PLTV YQE
Sbjct: 6 KKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G +P + +RE P E+E L R+IDRPIRPLF GF +EV VM +VLS D D
Sbjct: 66 KYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVEGFKNEVLVMCTVLSHDLVND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDEL-SLSD-----LNLVY 232
PDI+A A SAAL +S P+ GPI R+G G++++NPT D++ L + L+LV
Sbjct: 126 PDIVAMIAASAALTISGAPFMGPIAGARVGYEDGEYVLNPTCDDMHDLRNNPDQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T++ +M++ +A E++E ++ + AH + ++ I LAE + K+ ++ S
Sbjct: 186 AGTKDAVMMVESEAYELTEAEMLGAVTFAHEQIQPVIDLIIDLAEDSAKEPFDFAAPDYS 245
Query: 293 EQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLP 349
E V E + A + TD K ER A+ +++K +L EE+ + SL
Sbjct: 246 -AIFEAVKAAGEDKVRAAYAITD----KQERVAAVAAAKEEIKASLTEEQLADPSLGT-- 298
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A+ + V+R ++ EG R+DGR LD+VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 299 -ALKKLESSVLRGSVVKEGKRIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVT 357
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q +++L G F+LHY+FPP+ + EVG+ RRE+GHG LA +AL AV
Sbjct: 358 TLGTGDDEQMIDALTGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP DFPYT+RV SE+ S+GS+SMA+VCGGS+++MDA +PL+ VAGV++GLV E D
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAAVPLKAPVAGVAMGLVLEDDG 477
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
S Y +LTDILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A
Sbjct: 478 S------YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAK 531
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
GR+ IL M + +SA RT+ ++PR+ T+ D +R +IG G + R+I E +G ++
Sbjct: 532 DGRMHILGEMNKALSAGRTEFSAHAPRIETMTVPTDKIREVIGSGGKVIREIVEVSGAKV 591
Query: 650 SVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
++ DG + + + N ++K + + I+ E E G +YKG V + ++GAFV F G +
Sbjct: 592 DINDDGVIKIASPNNDSIQKAYDMIHAIVA-EPEEGQVYKGKVVKIVDFGAFVNFFGKRD 650
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+HVS++ + ++ SDV+ GQ++ ++ +G D RG ++L++K V
Sbjct: 651 GLVHVSQIENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMV 696
>gi|238918428|ref|YP_002931942.1| polyribonucleotide nucleotidyltransferase, putative [Edwardsiella
ictaluri 93-146]
gi|259534121|sp|C5BFC1.1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase, putative [Edwardsiella
ictaluri 93-146]
Length = 707
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 441/694 (63%), Gaps = 14/694 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLTV+YQE+
Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + + PD
Sbjct: 68 YAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE + + H + +E LA + GK + E+ ++ +V+
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHEQQQIVIENIKALAAEVGKPRWEWHAPEVNVALQRRVA 247
Query: 301 NLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+AEA + EA +++ + +D+I + V L E D + + + K V
Sbjct: 248 EMAEARLGEAYHITEKQARYAK---VDEIKESVIADLLAEDDALDAGEISDILGALEKAV 304
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ
Sbjct: 305 VRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQN 364
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L+G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P ++ FPYT
Sbjct: 365 IDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYT 424
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +
Sbjct: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQD-------NFVV 477
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL M
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVM 537
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I+APR +PR+ T+K + + ++ +IG G++ R + EETG I + DGT+ +
Sbjct: 538 EQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL+H+S+++
Sbjct: 598 AATDGDKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ V +V+D + +GQ+++++ + D +G ++LS+K
Sbjct: 657 KRVEKVTDYLQMGQEVAVKVLEVDRQGRVRLSIK 690
>gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
manganoxydans SI85-9A1]
gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
manganoxydans SI85-9A1]
Length = 710
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/716 (41%), Positives = 442/716 (61%), Gaps = 20/716 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E + R +TLETGKIAR A+GAV+ ET VL+TV S+K DF PLT
Sbjct: 1 MFDTHKVEIDWAGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E+E LV R+IDRPIRPLF G+ +E QV+ +VL
Sbjct: 61 VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVTVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD++A A SAAL LS +P+ GPIG R+G I G++ +NP +DE+S S L+LV A
Sbjct: 121 DLENDPDVLAMVAASAALTLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSESQLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A E++E + + H ++ I+LAE A K+ +E+ ++ S
Sbjct: 181 GTEGAVLMVESEAHELAEDIMLGAVMFGHRGFQPVIDAIIKLAEHAAKEPREHVVADYSA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVL 348
E + L E + + TD K +R A+D + V E E+ S + +
Sbjct: 241 LEAEML-QLVEGELRDAYKITD----KTQRYTAVDAVKAKVTGHFLPEGVEDTKYSKEQV 295
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+++ +++R I+ G R+DGR L VR I E+G LP HGS+LF+RG+TQ L
Sbjct: 296 GTVFKSLQAKIVRWNILDTGGRIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVV 355
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q +++L G +RF+LHY+FPP+ + E G+ RRE+GHG LA +AL
Sbjct: 356 ATLGTGEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRP 415
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP FPYT+R SEV S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E +
Sbjct: 416 MLPAPEQFPYTIRAVSEVTESNGSSSMATVCGTSLALMDAGVPLKRSVAGIAMGLIKEDE 475
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L+ A
Sbjct: 476 -------RFAVLSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIQGITEEIMQIALDQA 528
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GRL IL M + +S R + +PR+ ++ D +R +IG G + R+I E+TG +
Sbjct: 529 KGGRLHILQEMGQALSESRAELGEFAPRIEVMQIPTDKIRDVIGAGGKIIREIVEKTGAK 588
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I++ DGT+ + + + +E + + I+ E EVG +Y+G V E+GAFV F G +
Sbjct: 589 INIEDDGTVKIASSSGKEIEAAKKWIHSIVA-EPEVGEVYEGTVVKTVEFGAFVNFFGSR 647
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
GL+H+S+L+ + V++ +D+V G ++ ++ +G D RG ++LS+K V ++K
Sbjct: 648 DGLVHISQLAADRVAKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEIK 703
>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
Length = 712
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/694 (41%), Positives = 442/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
+E + + + K R +A++++ + V + E +E D +++ + + + + K +R
Sbjct: 250 SEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTIGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV TGE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KTGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|359409354|ref|ZP_09201822.1| polyribonucleotide nucleotidyltransferase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676107|gb|EHI48460.1| polyribonucleotide nucleotidyltransferase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 707
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/711 (41%), Positives = 434/711 (61%), Gaps = 15/711 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+ F+++ + G + I+LETGKIAR A+G V+ M ET VL T V + K +DF PLT
Sbjct: 1 MFNIFRKDIDWGGKTISLETGKIARQADGCVLATMGETTVLCTAVAAKKARPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E E LV R+IDRPIRPLFP F E QV+ +VLS
Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPSENETLVSRLIDRPIRPLFPKEFKCETQVICTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A SAAL LS +P+ GPI R+G + G +++NPT+ E+ S L+LV A
Sbjct: 121 DMENNPDIVAMVGASAALTLSGVPFFGPIAAARVGFVDGGYVLNPTLSEMDDSALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+E LM++ +A E+SE + + H + ++ + LAE A K+ ++
Sbjct: 181 GTKEGVLMVESEASELSEDVMLGAVTFGHEQMQTVIDAIVDLAEVAAKEPRDLPEEAPEA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
L IEA + K R A+ ++ + + E DE + L K ++
Sbjct: 241 ADLRDRLAALRDKIEAAYG--HADKTARQAAVAEVKAEALEVAGAEADEVLVGGLMKDLE 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V+R I+ G+R+DGR VRPI E G LP HGSSLF+RG+TQ L TLG
Sbjct: 299 A---DVVRSSILKTGMRIDGRDTKTVRPIVAEVGLLPRTHGSSLFTRGETQALVVSTLGT 355
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G RFMLHY+FPP+ + E G+ RRE+GHG LA ++L +LP +
Sbjct: 356 GQDEQIIDALTGESRARFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRSLNPLLPSK 415
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ + D
Sbjct: 416 EEFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKDGD----- 470
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+ L A GR+
Sbjct: 471 --EFAVLSDILGDEDHLGDMDFKVAGTDAGITALQMDIKITSITPEIMQIALAQARDGRI 528
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + ++ R ++P++ TLK D +R +IGP G + R+I EETG +I +
Sbjct: 529 HILGEMAKALTTARDGLAESAPKITTLKIPVDKIREVIGPGGKMIREIVEETGAKIDIED 588
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG+++V A +++ + L ++ I+ E E+G IY G V ++GAFV F G + GL+H
Sbjct: 589 DGSVSVAAVSQTSSDAALARIREIVA-EPELGEIYTGKVVKTVDFGAFVNFLGARDGLVH 647
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+SE+ +E V++ +DV G + ++ IG D RG +KLS+K V AD++
Sbjct: 648 ISEMKNERVAQTTDVCKEGDMVKVKVIGFDDRGKVKLSMKRVDQETGADLE 698
>gi|421594156|ref|ZP_16038617.1| polynucleotide phosphorylase/polyadenylase [Rhizobium sp. Pop5]
gi|403699753|gb|EJZ17106.1| polynucleotide phosphorylase/polyadenylase [Rhizobium sp. Pop5]
Length = 712
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 438/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PD+++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E + + H L+ I+LAE A K+ ++++ S
Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKA 351
E + LAE + + K +R A+D + VK EE + + + +
Sbjct: 241 LESEML-GLAEGELREAYK--ITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAI 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L+ VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 418 SAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE----- 472
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 473 GE--RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RAHILGEMAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|403234753|ref|ZP_10913339.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 10403023]
Length = 705
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/707 (41%), Positives = 448/707 (63%), Gaps = 22/707 (3%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K+ F + R +T+E G++A+ ANGAV++ ET VLST T+SK DF PLT
Sbjct: 1 MEQGKQVFSMDWAGRQLTVEIGQLAKQANGAVLVRYGETAVLSTATASKEPKPLDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D ++ A +S AL +SDIP+ GPI + +GR+ QFI+NP++ E SD+NLV A
Sbjct: 121 DQDCSSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRVDNQFIINPSVKEQEKSDINLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q ++ + GK+K E L +
Sbjct: 181 GTKDAINMVEAGADEVPEEVMLEAIMFGHEEIKRLIAFQEKIVAEMGKEKMEIALYELDS 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-----EEECDEESLQVL 348
+ ++ AE I K R +A++ +VK AL E+E + +++ +
Sbjct: 241 ELEAQIRGKAEESINKAVQ--VAEKHAREDAIN----EVKAALVAEFEEQEAEATTIKQV 294
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ ++ + K +R+ I E VR DGR++DE+RP+ E G LP HGS LF+RG TQ L
Sbjct: 295 KEILNKLVKEEVRRLITVEKVRPDGRKIDEIRPLSSEVGILPRTHGSGLFTRGQTQALSI 354
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLGA + Q L+ L TKRFM HY+FP F + E G G RRE+GHG L E+AL
Sbjct: 355 CTLGALGDVQILDGLGIEETKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEP 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P E DFPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV
Sbjct: 415 VVPSEKDFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVK--- 471
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+GE Y +LTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A
Sbjct: 472 --SGE--HYTVLTDIQGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
KGR+QILD M ++ PR+Q + +P++ T+ + D +R +IGP G KI +ETG +
Sbjct: 528 KKGRMQILDSMLATLTTPRSQLSKYAPKILTMTINPDKIRDVIGPSGKQINKIIDETGVK 587
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + + + ++ +K + ++ I+ RE+EVG +Y G V ++++GAFVE G+
Sbjct: 588 IDIEQDGTVFISSVDEAMNQKAKKIIEDIV-REVEVGQMYLGKVKRIEKFGAFVEIFSGK 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+SEL+ E + +V DVVS+G ++ ++ D +G + LS KAV
Sbjct: 647 DGLVHISELAEERIGKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAV 693
>gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS155]
gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS155]
Length = 703
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/700 (40%), Positives = 440/700 (62%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D+ RDF PLTV+YQEK +
Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 71 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NP++ +L+ S LNLV A T LM
Sbjct: 131 ISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK ++ + ++
Sbjct: 191 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDADLVAQIKE 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL L+ + + ++ K+V+R
Sbjct: 251 LAEAGLGDAYK--IQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 309 GRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 369 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 429 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 482 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQ 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ +K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 542 AIGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 602 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 661 VANVSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKETA 700
>gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS223]
gi|254782734|sp|B8E6N7.1|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS223]
Length = 699
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/700 (40%), Positives = 440/700 (62%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D+ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NP++ +L+ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK ++ + ++
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDADLVAQIKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL L+ + + ++ K+V+R
Sbjct: 248 LAEAGLGDAYK--IQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ +K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKETA 697
>gi|385786986|ref|YP_005818095.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
Length = 710
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/700 (41%), Positives = 441/700 (63%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L ++F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + ++ L +AGK + +++ ++E
Sbjct: 181 GTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+++ LAE+ + + K ER +D I + AL E + + +
Sbjct: 241 ALRSRIAALAESRLSDAYR--ITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLH 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 ALEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ARDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKG 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + +
Sbjct: 419 DAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDN----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILSVMEQAISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGEKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|338714012|ref|XP_001496138.3| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Equus caballus]
Length = 875
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/708 (41%), Positives = 433/708 (61%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++GSR + + +GK+ARFA+G+ V+ +T V+ T S S FLPL VDY++K A
Sbjct: 50 DLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFLPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L R+IDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL + S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFIPSPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVSKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
I+ E R DGR L +R I CE ILHGS+LF RG TQVLCTVT + + + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 422 SLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
++ G K FMLHY FPP+ NE+GK G+NRRE+GHG LAEKAL V+P DFP
Sbjct: 410 RIITAINGVNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+ VAGV++GLV++ +P GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNPDKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPLVETIQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDAGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|451823216|ref|YP_007459490.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776016|gb|AGF47057.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 699
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/708 (41%), Positives = 446/708 (62%), Gaps = 22/708 (3%)
Query: 54 KVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPL 112
KV+++FK G + LETG+IAR A+GAV+ M +T VL+TV +K S + F PL
Sbjct: 4 KVIKSFK----YGLHDVVLETGEIARQASGAVLASMGDTVVLATVVGNKETKSGQGFFPL 59
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TVDY EK ++ G IP + +REG E+E+L R+IDRP+RPLFP GFY+EVQ++ VLS
Sbjct: 60 TVDYIEKTYSAGRIPGGFFKREGKSSEKEILTSRLIDRPLRPLFPEGFYNEVQIVVHVLS 119
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
D + DPDI++ +SAAL +S IP+ GPIG IR+G + +FIVNPT ++LS SDL+LV
Sbjct: 120 VDPEIDPDIISMIGSSAALAISGIPFKGPIGAIRVGYLEEEFIVNPTKNQLSHSDLDLVL 179
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T + LM++ A+E+SE + + H + ++ L ++AGK + +++ +
Sbjct: 180 AGTSDAVLMVESTAKELSESLMLEAIAFGHDQMQVVVDNICELVKEAGKPEWDWEPNCHD 239
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE----SLQVL 348
+ +S+ + I + + K R L +I +K+ + + E S VL
Sbjct: 240 SNLVNLISDNYYSEISSAYNIKEKQK--RSTKLKEIKIRIKEFVCSKVIENNEIISDCVL 297
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ + +V+R +I++ R+DGR VRPI G LP HGS+LF+RG+TQ L
Sbjct: 298 DDIIFNIESKVVRGKILSGEPRIDGRNTRTVRPISIRLGVLPRAHGSALFTRGETQALVV 357
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALL 467
VTLG + Q ++SL G +F+ HY+ PPF EVG R+G+ RRE+GHG LA ++L
Sbjct: 358 VTLGTKHDEQIIDSLSGEYRDKFIFHYNMPPFATGEVG-RIGVPKRREIGHGYLARRSLT 416
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP DF YT+R+ SE+ S+GS+SMA+VCGGS+A+MDAG+P+ +HVAGV++GL+ E
Sbjct: 417 PMLPDSKDFQYTMRLVSEITESNGSSSMASVCGGSLAMMDAGVPIGKHVAGVAMGLILED 476
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D + ILTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI DI+ L
Sbjct: 477 DK-------FSILTDILGDEDHLGDMDFKVAGTVDGITALQMDIKIQGITKDIMDVALSQ 529
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GRL ILD M+ I + R + SP++ TLK + D +R +IG GA R I EET
Sbjct: 530 AKEGRLYILDKMQNSIDSSRLEMSSYSPKMLTLKINPDKIRDVIGKGGATIRSITEETAT 589
Query: 648 RISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I +S DGT+ + ++ +++ KV + ++EVGG+Y+G + + ++GA V+ G
Sbjct: 590 QIDISEDGTVVISGVDKDNVQEAQRKV-VELTTDVEVGGVYEGKILRILDFGAIVQLFPG 648
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GLLH+SE+S + ++DV+S+GQ++ ++ I D +G ++LS K +
Sbjct: 649 RDGLLHISEISSTRIQNINDVLSIGQKIKVKVIESDDKGRLRLSAKVL 696
>gi|336323726|ref|YP_004603693.1| polyribonucleotide nucleotidyltransferase [Flexistipes sinusarabici
DSM 4947]
gi|336107307|gb|AEI15125.1| Polyribonucleotide nucleotidyltransferase [Flexistipes sinusarabici
DSM 4947]
Length = 699
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/693 (41%), Positives = 435/693 (62%), Gaps = 19/693 (2%)
Query: 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR--DFLPLTVDYQEKQFAQG 124
S I L+TG A+ AN ++ +T VL T SK D+ DF PLTV+Y EK +A G
Sbjct: 16 SEPIYLKTGWKAKQANASIWAQHGDTIVLVAATCSK-DAPEGIDFFPLTVNYFEKFYAVG 74
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P +RE L+ R+IDRP+RPLFP GF +E Q++A V+SSD DI+A
Sbjct: 75 KIPGGFFKREAKPSDRETLISRLIDRPLRPLFPDGFRNETQIVAMVVSSDQVCSSDILAL 134
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
NA SA+LM+SDIP+ GP+G +R+GRI G+ I+NP +L ++N+ A T + +M++
Sbjct: 135 NAASASLMISDIPFNGPVGAVRVGRINGELILNPDAGKLDELEMNITVAGTEDAIVMVEA 194
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+SE ++ L H K + Q ++ + GK+K + E + KV++
Sbjct: 195 GMDIVSEDEVIDALEFGHEGIKKIIAVQKQMRDDLGKEKISFSDFSTPEDLVVKVNSEIG 254
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL----QVLPKAVDTVRKRVI 360
++ P K E+ +A+D+I ++ + ++EE EE ++ A V K V
Sbjct: 255 DKLKKAVMIPG--KQEKYDAIDEIKEEYLEKVKEELGEEDFADKSKLYKDAFSAVEKNVF 312
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R + G RVDGR+ DE+RPI E+G LP HGS+LF+RG+TQ L T TLG ++Q +
Sbjct: 313 RDVTLNSGQRVDGRKYDEIRPIDIETGLLPKAHGSALFTRGETQALVTTTLGTKMDSQMV 372
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ + G +KRFMLHY+FPP+C+ EVG RRE+GHG LAE+AL +LP E FPYT+
Sbjct: 373 DDIEGETSKRFMLHYNFPPYCVGEVGFMKPPGRREIGHGALAERALQYILPDEESFPYTM 432
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV S+++ S+GS+SMA+VCGGS+ALMDAG+P+++ VAG+++GL+ E G+ + +L
Sbjct: 433 RVVSDILESNGSSSMASVCGGSLALMDAGVPVKDAVAGIAMGLIYE----DGK---FAVL 485
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI+GLEDHLGDMDFK+ GT+ G+TA+Q+DIK G+ DI+ E L+ A +GRL ILD M
Sbjct: 486 TDIMGLEDHLGDMDFKVTGTKEGITALQMDIKIEGLSRDILKEALQQAKEGRLYILDKMN 545
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
++ +P+ D N+PR + + + + +IGP G + I +ETG I + D G L +
Sbjct: 546 EQLPSPKELPD-NAPRFERINVNPEKVGLIIGPSGKTIKGIIDETGVAIDILDGGILNIF 604
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A ++ +E EK++ ++ +E+EV +Y G V V EYGAFVE G + LLHVS+ S E
Sbjct: 605 ATDKESIENAREKIEALV-QELEVNKVYTGKVKKVMEYGAFVELLPGVEALLHVSQYSKE 663
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ ++D + VG ++ ++ G+D RG K++ K
Sbjct: 664 RIKSIADYLKVGDEVKVKYQGKDERGRHKITRK 696
>gi|187610327|sp|Q1QS60.2|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 720
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/711 (41%), Positives = 438/711 (61%), Gaps = 25/711 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K + V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRP+RPLF G+ +E QV+ +VLS D + DP
Sbjct: 67 TYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A A SAAL LS P+ GPIG R+G + ++++NPT+DE+ + L LV A T +
Sbjct: 127 DVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVAGTADAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E+SE + + H + I LAEKA K+ +E +S + LEK
Sbjct: 187 LMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRE--VSQADDSALEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYS---KFERGEALDKIGQDVKKALEEECDEESLQVLPKAV--D 353
+ L E + P+Y+ K +R A+ V E E L A
Sbjct: 245 MLGLIEGELR-----PAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R I+ G R+DGR VR I E G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 HLEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ VLPP
Sbjct: 360 GEDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPH 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYT+RV SE+ S+GS+SMA+VCG S++LMDAG+PL+ AG+++GL+ E
Sbjct: 420 HEFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEG------ 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
Y +L+DILG EDHLGDMDFK+AGT +G++++Q+DIK AGI +I+ L A +GR+
Sbjct: 474 -SRYAVLSDILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRI 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + ++ R + +PR+ T K D +R +IG G + R+I E+TG +I++
Sbjct: 533 HILGEMAKALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIED 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ V + + M+ ++ + I + EVG IY+G V V E+GAFV F G + GL+H
Sbjct: 593 DGTVKVASNDGEAMKAAIKWIKS-IASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
+S+L+ V + SD+V G ++ ++ +G D RG +LS+KAV + D++
Sbjct: 652 ISQLAANRVQKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGEDLE 702
>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
Length = 733
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/710 (41%), Positives = 442/710 (62%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R + LETGKIAR A+GA++ ET VL+TV S+K ++F PLT
Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKNYAVGKIPGGYFKRENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI RIG GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A E+ E + + + I+LAE A K+ +++ LS+
Sbjct: 181 GTENAVLMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKEPRDFIPENLSV 240
Query: 291 ISEQTLEKV-SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV----KKALEEECDEESL 345
+ + L+ V +L +A+ TD K +R A+D + ++V + EE C+ +
Sbjct: 241 LEKNMLKMVEQDLKDAY---TITD----KQKRHTAIDVLKEEVINKFMQKTEENCEFNTD 293
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
Q+ ++ +++R+ I+ G R+DGR +VR I E G LP HGS+LF+RG+TQ
Sbjct: 294 QI-ATVFKHLQAKIVRQNILDTGKRIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG + Q ++SL G + F+LHY+FPPF + E+G+ RRE+GHG LA +A
Sbjct: 353 LVVTTLGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 413 IHPMLPTKESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 473 E-----GE--KFAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A GR+ IL+ M + +++ R++ SPR+ + D +R +IG G + R+I E+T
Sbjct: 526 AQAKDGRIHILNEMAKALTSARSELSEFSPRIEMMNITVDKIRDVIGSGGKVIREIVEKT 585
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ DGT+ + + + +E + I+ E E+G IY+G V + E+GAFV F
Sbjct: 586 GAKINIEDDGTIKIASSDLKTIEAAKHWILSIVD-EPEIGAIYQGTVVKIAEFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG I+LS+K V
Sbjct: 645 GSRDGLVHISQLASERVAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
C91]
gi|122313196|sp|Q0AE53.1|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
Length = 705
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/711 (42%), Positives = 449/711 (63%), Gaps = 19/711 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTV 114
++ K+ G +T+ETG+IA+ A+GAV++ MD+T VL TV K +DF PLTV
Sbjct: 1 MKPIKKSITYGHHTLTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DYQEK ++ G IP ++ +REG P E+E+L R+IDRPIRPLFP GFY+EVQV+A VLSSD
Sbjct: 61 DYQEKFYSAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ D DI A SAAL+LS IP+ GPIG R+G I ++++NPT +L+ S LNLV A
Sbjct: 121 AEIDADIPATIGASAALILSGIPFDGPIGAARVGYIDNEYVLNPTTTQLNKSQLNLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T++ LM++ +A E+SE + + H + + + LA++ G +++ +
Sbjct: 181 TQKAVLMVESEANELSEDVMLGAVTYGHDQMQQVINMINELADETGVTAWDWQPAEKDHS 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQ----DVKKALEEECDEESLQVLPK 350
+EK++ LAEA + F K R EA+ +I Q ++K EE E++++ +
Sbjct: 241 LIEKITQLAEADLRDAFR--LKQKSVRTEAISEIWQRVFTELKAGTEEGPSEQTIKEIGF 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A++ +++R I+ R+DGR VRPI G LP HGS+LF+RG+TQ L T
Sbjct: 299 ALEA---KIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q++++L G ++RFMLHY+ PPF E G+ RRE+GHG LA++ALLAVL
Sbjct: 356 LGTARDEQKIDALQGDYSERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVL 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
PP +F Y +RV SEV S+GS+SMA+VCGG +ALMDAG PL+ HVAG+++GL+ E +
Sbjct: 416 PPVEEFGYAMRVVSEVTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGN-- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A +
Sbjct: 474 -----RFAVLTDILGDEDHLGDMDFKVAGTEEGITALQMDIKIQGITKEIMQVALLQAKE 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL ILD M++ + R ++PR+ K + + +R +IG GA+ R + EETG I
Sbjct: 529 GRLHILDIMKQSLPIARDSVSVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTID 588
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+S DG++T+ + + E+ +++ I ++EVG IY+G V + ++GA V G+ G
Sbjct: 589 ISDDGSVTIASISNEGGEQAKRRIENITA-DVEVGKIYEGTVLKLLDFGAIVSILPGKDG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
LLH+S++++E V V+D + GQ + ++ + D +G ++LS+KA S A
Sbjct: 648 LLHISQIANERVESVADHLKEGQIIRVKVLEADDKGRLRLSMKAASTEAAA 698
>gi|410942901|ref|ZP_11374642.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter frateurii
NBRC 101659]
Length = 716
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 311/720 (43%), Positives = 446/720 (61%), Gaps = 33/720 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+ + F++E E R + LETGKIAR A+GAV++ +T VL T +K SV+ DF P
Sbjct: 1 MFDYFRKEIEWAGRPLILETGKIARQADGAVMVTYGDTVVLCTAVGAK--SVKPGQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
+TV+YQEK +A G IP + +REG P E E+L R+IDRP+RPLFP F +EVQV A+VL
Sbjct: 59 MTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPLRPLFPENFRNEVQVTATVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DP I++ SAAL LS IP+ GP+G RIGRI G+ +VNPT+ E+ S L+LV
Sbjct: 119 SHDMENDPAIVSLIGCSAALTLSGIPFFGPVGAARIGRIDGKLVVNPTLSEVKDSTLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A T E LM++ +A E+SE+ + + L H +E I LAE A K + L +
Sbjct: 179 VAGTSEGVLMVESEASELSEETMLEAVTLGHTSFQPVIEAIIALAEHAAKAP--WDLPTL 236
Query: 292 SEQTL------EKVSN--LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE 343
S++ + EKV N +AEA+ E V Y K GEA ++I + + EE D E
Sbjct: 237 SKEEIALRKRVEKVGNKLMAEAYKERV-KQARYKKV--GEAKERINEILA---EEGFDVE 290
Query: 344 SLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDT 403
+ + K ++ +V+R I+ G+R+DGR L VRPI E G LP HGSSLF+RG+T
Sbjct: 291 LAKPMLKELEA---QVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGET 347
Query: 404 QVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAE 463
Q L TLG + Q +++L G F+LHY+FPP+ + E G+ RRE+GHG LA
Sbjct: 348 QALVVATLGTGQDEQVIDALEGEYRSNFLLHYNFPPYSVGECGRMGSPGRREIGHGKLAW 407
Query: 464 KALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGL 523
+AL +LP + FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL
Sbjct: 408 RALHPLLPSKEQFPYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGL 467
Query: 524 VSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICE 583
+ E + + +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+
Sbjct: 468 IK-------EDRGFAVLSDILGDEDHLGDMDFKVAGTEQGITALQMDIKITSITPEIMQI 520
Query: 584 CLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEE 643
LE A GR+ IL M + ++ R N+P++ T+ + +R +IG G + R+I E
Sbjct: 521 ALEQARGGRIHILGEMSKALTEGREGVSGNAPKITTMSVPKEKIRDVIGSGGKVIREIVE 580
Query: 644 ETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVE 702
+G ++ + DGT+T+ A N +K + +++ I+ E E+G IY G V ++GAFV
Sbjct: 581 YSGAKVDIGDDGTITIAASNDEQAQKAIARIEGIVA-EPEIGRIYDGKVVKTADFGAFVN 639
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
F G + GL+H+SEL+ V++ SDVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 640 FLGPRDGLVHISELTQGRVAKTSDVVQQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADI 699
>gi|375308275|ref|ZP_09773561.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus sp.
Aloe-11]
gi|375079699|gb|EHS57921.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus sp.
Aloe-11]
Length = 700
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/697 (41%), Positives = 439/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV + ET VL TVT+S+ DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P ++ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ GQF++NP + + SDL LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQKTSDLYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV-S 300
++ + EI E+ + + H E + +L + AGK+K + KL + ++ +V +
Sbjct: 186 VEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDDKVNSEVRA 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
A+ +EAV K R EA+D I ++ E + E E L+ + + + + K
Sbjct: 246 YAADRLVEAV---KVAEKHARQEAIDAINEETVAHFEAQYIETPELLKDVSEVLYDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR+LDE+RPI ++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI +I+ + L+ A +GRL IL
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDREILQDALKQAREGRLFILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR Q +P++ T+ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MMEAIQKPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ + EK ++ I+ +E+ VG IY G V ++++GAFVE G+ GL+H+S+LS
Sbjct: 596 IASTNQEMNEKARSIIEGIV-KEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DVV++G ++++ D +G + LS KAV
Sbjct: 655 TERVAKVEDVVAIGDTITVKVTEIDQQGRVNLSRKAV 691
>gi|333368619|ref|ZP_08460793.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
1501(2011)]
gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
1501(2011)]
Length = 702
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 283/705 (40%), Positives = 439/705 (62%), Gaps = 15/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTV 114
+ T EF+ G++ + +ETG+IAR AN +V + +++ V S+ ++F PLTV
Sbjct: 3 MFNTISREFQYGNQQVIIETGRIARQANSVLVHMGGVSVLVAVVVKSEAKEGQNFFPLTV 62
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP Y +REG P E E L R+IDRPIRPLFP G+ +E+Q+ A+V+SSD
Sbjct: 63 NYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSD 122
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
K DI A SAAL +SD P+ GP+G R+G I G++++NP+++EL SDL+LV A
Sbjct: 123 KKHYADIAAMIGASAALAISDAPFNGPVGGARVGFINGEYVLNPSIEELKNSDLDLVVAG 182
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T+ LM++ +A E+SE + + H + ++ + LA+ G +K+++ ++ +
Sbjct: 183 TKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKAVGTEKQQFVAPELNAE 242
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE----CDEESLQVLPK 350
EKV+ + + ++ K R E LD+I +AL + E + +
Sbjct: 243 LKEKVTTQFGSQVADAYSIS--DKQARYEKLDEIKAAAIEALAGDPESEEFSEKESQIKE 300
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ ++ R +R I++ R+DGR LD VR + + G LP HGS+LF+RG+TQ L T T
Sbjct: 301 IYNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTT 360
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + ++SL G FMLHY+FP F + E G+ RRE+GHG LA + + A+L
Sbjct: 361 LGNSRDVNLIDSLAGTIQDHFMLHYNFPHFSVGETGREGVPKRREIGHGRLARRGVQAML 420
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + FPY +RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 421 PDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDR- 479
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +L+DILG EDHLGDMDFK+AGT+ G+TA+Q+DIK GI DI+ + LE AH
Sbjct: 480 ------FAVLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITADIMEKALEKAHA 533
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL+ M + + RT+ + ++P A ++ ++D +R +IG GA R++ E+TG I
Sbjct: 534 GRIHILNAMNEVLPSSRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVID 593
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D GT+ + +N++ ++ + +++ + E+EVG +YKG V V ++GAFV G G
Sbjct: 594 IDDNGTIRIFGENKAATKEAIRQIEALTA-EVEVGKVYKGTVARVVDFGAFVTVLPGTDG 652
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S++S E V VSD +S GQ++++ D RG IKL++K V
Sbjct: 653 LVHISQISDERVENVSDYLSEGQEINVLVQDVDNRGRIKLTMKGV 697
>gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4]
gi|123130662|sp|Q0HLF6.1|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4]
Length = 699
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/700 (41%), Positives = 443/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K ++ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+ +L+ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAGTEGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK + + +E + +V
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEALVAQVKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE + + K ER + + K+AL E L+ + + ++ K+V+R
Sbjct: 248 LAEVGLAQAYQ--IQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------NFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEAA 697
>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
S44]
gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
S44]
Length = 747
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/699 (40%), Positives = 436/699 (62%), Gaps = 14/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR A+GAV++ +D+T VL+TV SK + +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GFY++V V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G I G++++NP + S ++LV A T LM
Sbjct: 131 AAMIATSAALAVSGIPFSGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVAGTESAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A ++ E+ + + H + ++ L + GK ++ E + KV+
Sbjct: 191 VESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDEALIAKVAE 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVDTVRKRVI 360
L EA + A + + +K R A DVK AL E+ + ++V D + ++
Sbjct: 251 LGEAKLRAAYQE--RNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFD-IEAGIV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+A R+DGR VRPI S LP HGS+LF+RG+TQ L TLG +AQ++
Sbjct: 308 RSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL A LP + +FPYT+
Sbjct: 368 DALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKEEFPYTI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------KFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ +T+ +P+L T+K + + +R +IG GA R + EETG +I++ DGT+T+
Sbjct: 541 EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + E +++ I E+E+G IY+G + + E+GA V G+ GLLH+S+++HE
Sbjct: 601 ATDGAKAEAAKLRIEQITA-EVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V +V+D + GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 660 RVEKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERP 698
>gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase [Paenibacillus polymyxa SC2]
gi|386040628|ref|YP_005959582.1| polynucleotide phosphorylase [Paenibacillus polymyxa M1]
gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
SC2]
gi|343096666|emb|CCC84875.1| polynucleotide phosphorylase [Paenibacillus polymyxa M1]
Length = 700
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/697 (41%), Positives = 439/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV + ET VL TVT+S+ DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P ++ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ GQF++NP + + + SDL LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSDLYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV-S 300
++ + EI E+ + + H E + +L + AGK+K + KL + E+ +V +
Sbjct: 186 VEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEVRA 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
A+ +EAV K R EA+D + ++ E + E E L + + + + K
Sbjct: 246 YAADRLVEAV---KIAEKHARQEAIDAVNEETVAHFEAQYIETPELLSDVSEVLYDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR+LDE+RPI ++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI +I+ + L+ A +GRL IL
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRNILQDALKQAREGRLFILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR Q +P++ T+ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MMEAIQKPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ + EK ++ I+ +E+ VG IY G V ++++GAFVE G+ GL+H+S+LS
Sbjct: 596 IASTNQEMNEKARSIIEGIV-KEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DV+++G ++++ D +G + LS KAV
Sbjct: 655 TERVAKVEDVIAIGDTITVKVTEIDQQGRVNLSRKAV 691
>gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS195]
gi|373950565|ref|ZP_09610526.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS183]
gi|378709723|ref|YP_005274617.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS678]
gi|386323598|ref|YP_006019715.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
BA175]
gi|386342177|ref|YP_006038543.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS117]
gi|418025540|ref|ZP_12664518.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS625]
gi|187611316|sp|A3D7K1.2|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037315|sp|A9KZW6.1|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS195]
gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS678]
gi|333817743|gb|AEG10409.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
BA175]
gi|334864578|gb|AEH15049.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS117]
gi|353535152|gb|EHC04716.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS625]
gi|373887165|gb|EHQ16057.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS183]
Length = 700
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/700 (40%), Positives = 440/700 (62%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K D+ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NP++ +L+ S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK ++ + ++
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDADLVAQIKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL L+ + + ++ K+V+R
Sbjct: 248 LAEAGLGDAYK--IQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ +K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGEATKEAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKETA 697
>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|423592197|ref|ZP_17568228.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|401232330|gb|EJR38832.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
Length = 717
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK+K KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++ + + V + E +E D ++L + + + + K +R
Sbjct: 250 AETDMHSAIQ--VHEKHAREDAINVVKKRVIEHYEAQEVDADTLGQVSEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL VLP E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + EK + ++ I+ RE++VG IY G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNEKAKKIIEDIV-REVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++S++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693
>gi|389872939|ref|YP_006380358.1| polynucleotide phosphorylase/polyadenylase [Advenella kashmirensis
WT001]
gi|388538188|gb|AFK63376.1| polynucleotide phosphorylase/polyadenylase [Advenella kashmirensis
WT001]
Length = 720
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/725 (40%), Positives = 450/725 (62%), Gaps = 25/725 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G + + LETG+IAR ++GAVV+ M ++ VL+TV ++K +DF PLTVDY EK +
Sbjct: 9 FQYGDQTVVLETGEIARQSSGAVVVSMGDSVVLATVVAAKNAKPGQDFFPLTVDYVEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP + +REG P E+E L R+IDRP+RPLFP GFY+EVQV+ VLS D + DPDI
Sbjct: 69 SAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSVDPQIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A +SAAL +S IP+ GPIG R+G I GQ+++NPT D+L S++NLV A T LM
Sbjct: 129 AALIGSSAALAVSGIPFDGPIGAARVGYINGQYLLNPTQDQLVDSEMNLVVAGTENAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + G+ H + + L +AGK + +++ +E + V+
Sbjct: 189 VESEAKQLSEEVMLGGVVFGHEQMQAAINAIHDLVAEAGKPEWDWQPEAKNEALIAAVTA 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT------V 355
AE+ +++ + K ER L ++ VK+ L E+ + Q P AV +
Sbjct: 249 AAESGLKSAYE--IRQKQERTTKLREVTAAVKQTLAEQAAQAG-QDAPDAVAIENIIFDL 305
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+++R +I+A R+DGR VRPI G LP HGS+LF+RG+TQ L TLG
Sbjct: 306 ESKIVRGQILAGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVIATLGTKQ 365
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q ++S++G RFMLHY+ PPF E G+ RRE+GHG LA++AL++ LP D
Sbjct: 366 DEQIIDSVMGEHRDRFMLHYNMPPFATGETGRFGAPKRREIGHGRLAKRALISTLPAHED 425
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
F YT+RV SE+ S+GS+SMA+VCGGS+A+MDAG+P+++HVAGV++GL IK
Sbjct: 426 FQYTIRVVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGL----------IK 475
Query: 536 D---YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
D + +LTDILG EDHLGDMDFK+AGT+ G+TA+Q+DIK GI +I+ L A GR
Sbjct: 476 DGGKFAVLTDILGDEDHLGDMDFKVAGTKNGITALQMDIKIQGITKEIMQVALAQARDGR 535
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
+ IL M ++ R + +PR+ ++K + + +R +IG GA R + EETG I +S
Sbjct: 536 MHILGKMTEALTGSREELSTFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGCHIDIS 595
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G +T+ + + ++ ++ + +EVG +Y+G V + ++G V+ G+ GLL
Sbjct: 596 DEGVVTISSADLDKAKEAERRIAELTAV-VEVGQVYEGTVQRLLDFGGIVQILPGRDGLL 654
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVP 771
H+SE+++ ++ ++DV++VGQ++ ++ I D RG ++LS KA+ A EG+
Sbjct: 655 HISEIANYRIANINDVLTVGQKVKVKVIEADDRGRLRLSAKALGGLEGAQENAPAEGTES 714
Query: 772 VNKQA 776
K A
Sbjct: 715 AEKPA 719
>gi|337264552|ref|YP_004608607.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
opportunistum WSM2075]
gi|336024862|gb|AEH84513.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
opportunistum WSM2075]
Length = 715
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/704 (42%), Positives = 441/704 (62%), Gaps = 24/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ETKVL+TV S K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ Q++ +V+ D + D
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T +
Sbjct: 126 PDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSMISEQT 295
LM++ +A+E+ E+ + + H ++ I+LAE A K+ +++ S++ +
Sbjct: 186 VLMVESEAKELGEELMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFTAPDYSVLEAEM 245
Query: 296 LEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESL--QVLPKA 351
L+ V + L+ A+ + K +R A+D + VK A E DE + +
Sbjct: 246 LKIVGDELSNAY-------KNVDKQKRYAAVDAVKAKVKAAFAPAEGDEAKYTSEQIGSV 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L TL
Sbjct: 299 FKELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G ++F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 359 GTGEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 419 SADQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE----- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L+ A G
Sbjct: 474 GE--RFAVLSDILGDEDHLGDMDFKVAGTTSGITSLQMDIKIEGITEEIMKIALDQAKDG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M ++ R + +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 532 RQHILGEMAHALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKIASSNAKEIEAAKKWIHTIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L++E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLANERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
Length = 712
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/699 (41%), Positives = 444/699 (63%), Gaps = 14/699 (2%)
Query: 60 KEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQ 117
K+ F I R +T+ET ++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+
Sbjct: 5 KQVFSIDWAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYE 64
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D
Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDC 124
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
++ A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++
Sbjct: 125 SSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKD 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
M++ A ++ E+ + + H E + + Q + + GK+K E KL + +
Sbjct: 185 AINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQ 244
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVR 356
V ++E + + + K R +A++++ + V + E +E D ++L + + + +
Sbjct: 245 AVREMSEKDMHSAIQ--VHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
K +R+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA +
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q L+ L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DF
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYTVR+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--H 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
Y IL+DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL
Sbjct: 476 YTILSDIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
+HM I+ PRT+ +P++ T+ + D +R +IGP G KI EETG +I + DGT
Sbjct: 536 NHMLSVIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SE
Sbjct: 596 VFISSINQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISE 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ E V +V DVV +G ++++ I D +G + LS K +
Sbjct: 655 LALERVGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
30120]
gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
30120]
Length = 685
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/689 (41%), Positives = 445/689 (64%), Gaps = 12/689 (1%)
Query: 77 IARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
IAR A AV++ MD+T V T V K +DF PLTV+YQE+ +A G IP ++ RREG
Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E LV R+IDRP+RPLFP GF +E+Q++A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
+P+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE+ +
Sbjct: 122 VPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPS 315
+ H + ++ L ++AGK+K +++ +++ ++V+ LAE+ + +
Sbjct: 182 GAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVAALAESRMGDAYR--I 239
Query: 316 YSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQ 375
K ER +D I ++V AL E + + + + + K+V+R R+I R+DGR+
Sbjct: 240 TEKQERYAQVDLIKEEVIGALVAEDENVDVSEVSDILAHLEKQVVRSRVIRGEPRIDGRE 299
Query: 376 LDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHY 435
D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G T RF+ HY
Sbjct: 300 KDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHY 359
Query: 436 SFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSM 495
+FPP+ + E G RRE+GHG LA++ +LAV+P + +FPYTVRV SE+ S+GS+SM
Sbjct: 360 NFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQAEFPYTVRVVSEITESNGSSSM 419
Query: 496 ATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDF 555
A+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+DILG EDHLGDMDF
Sbjct: 420 ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------DFVVLSDILGDEDHLGDMDF 472
Query: 556 KIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSP 615
K+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I++PR + +P
Sbjct: 473 KVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQAINSPREEISEFAP 532
Query: 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVD 674
R+ T++ + D ++ +IG G++ R + EETG I + DGT+ + A + ++ + +++
Sbjct: 533 RIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIE 592
Query: 675 FIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQL 734
I E+EVG IY+G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +GQ++
Sbjct: 593 DITA-EVEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 651
Query: 735 SLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
++ + D +G I+LS+K EA V+
Sbjct: 652 PVKVLEIDRQGRIRLSMKEAVAGEEAPVQ 680
>gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase [Mesorhizobium loti MAFF303099]
gi|81778152|sp|Q98BI3.1|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti
MAFF303099]
Length = 715
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/704 (42%), Positives = 441/704 (62%), Gaps = 24/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K E E G R + LETGKIAR A+GAV+ ETKVL+TV S K DF PLTV+YQE
Sbjct: 6 KVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ Q++ +V+ D + D
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ ATSAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T +
Sbjct: 126 PDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSMISEQT 295
LM++ +A+E+ E+ + + H ++ I+LAE A K+ +++ S + +
Sbjct: 186 VLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSALEGEM 245
Query: 296 LEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKA 351
L+ V + L+ A+ TD K +R A+D + VK A EE + + +
Sbjct: 246 LKIVGDELSNAY---KITD----KQQRYAAVDAVKAKVKAAFAPAEGEEPKYTSEQIGSV 298
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +V+R I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L TL
Sbjct: 299 FKELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATL 358
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G ++F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 359 GTGEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 419 SADQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE----- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L+ A G
Sbjct: 474 GE--RFAVLSDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M ++ R + +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 532 RQHILGEMAHALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKIASSNAKEIEAAKKWIHTIVA-EPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L++E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLANERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
SAFR-032]
gi|187470936|sp|A8FDD7.1|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
SAFR-032]
Length = 705
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/689 (41%), Positives = 437/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLS+ T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ G+FI+NP +++L SD+NLV A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + +E Q + + GK K + L + + ++V LAE +
Sbjct: 195 EVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLADEVKALAETDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-DEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A+ + + V + EEE DE +++ ++ + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAISAVKKAVVEKFEEEDRDEATIKQAKDVLNKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ DI+ E L+ A KGR++ILD M I
Sbjct: 486 EDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTIPTS 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + R +P++ T+K + D +R +IGP G KI E+TG +I + DGT+ + + +
Sbjct: 546 RGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTEEDM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAF+E G+ GL+H+SEL+ + V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G +L ++ D +G + LS KAV
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693
>gi|355751328|gb|EHH55583.1| hypothetical protein EGM_04819 [Macaca fascicularis]
Length = 783
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPLPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPMKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS +T N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKSQTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|239907801|ref|YP_002954542.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
magneticus RS-1]
gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
Length = 751
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/707 (42%), Positives = 436/707 (61%), Gaps = 15/707 (2%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPL 112
T + E IG + +T+ETG++A A+GA+ + T VL T + + F PL
Sbjct: 2 TMTFSPIRLEAAIGDKTVTIETGRLANQADGAIWIQSGGTVVLVTACTQALAEEKGFFPL 61
Query: 113 TVDYQEKQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
VDYQE +A G IP +Y RRE G P ERE+LV R+IDRP RPLFP GF EVQ++A+VL
Sbjct: 62 VVDYQEMAYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVL 121
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNL 230
S+DG+ +PD++A SAAL LS IP+ GPI R+G I GQF++NPT+ +++ +DLNL
Sbjct: 122 SADGEVEPDVLALTGASAALHLSKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGADLNL 181
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V+A +R+ +M++ R +SE+ L L H + L+ Q +L EKAGK K +
Sbjct: 182 VFAASRDAVVMVEGAGRFVSEELLADALEFGHKAILPLLDLQEQLREKAGKPKIAFTPPA 241
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
+ V+ AEA ++ FT K R EA + Q V +A+ E L +
Sbjct: 242 PIVELEALVAATAEAGLKQAFT--IQEKMARREARKAVKQAVIEAVVAAYPETPLYKMKA 299
Query: 351 A--VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
++++ K+++RK I G+R+DGR VRPI E G LP HGS+LF+RG+T+ LC
Sbjct: 300 GEILESMEKKLLRKLIKDTGIRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCV 359
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG+ + Q++E+L G KRFMLHY+FPP+C+ EV G +RRE+GHG LAE+++L
Sbjct: 360 ATLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRREIGHGALAERSILP 419
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLP +FP+T+R+ S+VM S+GS+SMA+V G S+ALMDAG+P++ VAG+++GL+ E D
Sbjct: 420 VLPGPEEFPFTMRIVSQVMESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDD 479
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
D+ +LTDILG ED +GDMDFK+AGT GVT IQ+DIK GIP ++ + L A
Sbjct: 480 -------DFLVLTDILGDEDAMGDMDFKVAGTADGVTGIQMDIKITGIPQAVMRQALNQA 532
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL M + PR + +P+LA + + + +R +IGP G + + ETG
Sbjct: 533 KDARLHILGRMAAVLPEPRPELSALAPQLAVVHINPEKIREVIGPGGKNIKAMTAETGAS 592
Query: 649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + D G +++ A +EK +V + + +VG YKG V + + GA VE G
Sbjct: 593 IDIEDTGKISIFAPTLESLEKAKARVLY-YDQHADVGANYKGRVIKIIDCGAIVEILPGL 651
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+GL+HVS+L E V+ +DVV +GQ++ ++ + + G ++LS KAV
Sbjct: 652 EGLVHVSQLDVERVASPADVVKMGQEIEVKVLDVEPTGRVRLSRKAV 698
>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
Length = 705
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/707 (41%), Positives = 436/707 (61%), Gaps = 15/707 (2%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGD-SVRDFLP 111
+ + + K + E+ R I+ ETG++AR A G+++ + + V T +K DF+P
Sbjct: 7 SNMFDVKKTQAEVAGRTISFETGRVARQAGGSILAQVGDVVVHVAATCAKQPLQGVDFMP 66
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTV YQEK +A G + +REG P E+E L R+IDRPIRPLFP G++HE QV+A+V+
Sbjct: 67 LTVHYQEKTYAAGRFLGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVM 126
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D +PDI+A N SAAL +SDIP+ PI R+G I G+FI+NP+ ++++ S L+L+
Sbjct: 127 SVDEGTNPDIVAINGVSAALAISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESSLDLI 186
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A TR+ LMI+ +A+E+SE+ + + L+ L + AGK+K +L+
Sbjct: 187 VAGTRDAVLMIESEAKELSEEQMIDAISFGQAGYQPVLDAIEELVKLAGKEKLVIELAGG 246
Query: 292 SEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP 349
+ + V+ EA + A + TD S ++ + EA Q E+ S +
Sbjct: 247 NSDVQDAVNAAFEADVRAAYAITDKS-ARAAKIEAFRAAAQAKFAGTEDAPGAYSSNDVS 305
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A+ ++ K+V+R+ IIA R+DGR ++VR I C+ G LP HGS+LF+RG+TQ L T+
Sbjct: 306 SAMKSLEKKVVRRSIIAGNPRIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTI 365
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVG-LNRREVGHGTLAEKALLA 468
TLG ++ Q ESL G +RFMLHY+FPP+ + E +R G RRE+GHG LA + + A
Sbjct: 366 TLGTESDMQMTESLEGVAKQRFMLHYNFPPYSVGE-ARRFGPPGRREIGHGRLARRGVEA 424
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLP F Y +R SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAGV++GL+ E D
Sbjct: 425 VLPSMEKFGYAIRSVSEITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQD 484
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
Y +LTDILG EDHLGDMDFK+AGTR GVT +QLDIK G+ +I+ E L A
Sbjct: 485 -------GYAVLTDILGDEDHLGDMDFKVAGTREGVTTLQLDIKIGGLTREIMQEALAQA 537
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
H GR+ ILD M + + PR ++PR+ T+K D +R +IG G + R I E TG +
Sbjct: 538 HAGRMHILDEMAKCMETPRGAIADHAPRMFTMKVKVDKIREVIGAGGKVIRGIVEATGAK 597
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
+ + DGT+ + A E + ++ I+ E+EVG IY G V + ++GAFV GG
Sbjct: 598 VDIEDDGTIKIFAVTGDAGEAAKKMIEDIVA-EVEVGAIYTGKVVKLMDFGAFVRVVGGT 656
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S++++ V +V+D + GQ++ ++ + D +G I+LS+K V
Sbjct: 657 DGLVHISQIANHRVEKVADELKEGQEVRVKVLEVDRQGKIRLSMKDV 703
>gi|452851475|ref|YP_007493159.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
piezophilus]
gi|451895129|emb|CCH48008.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
piezophilus]
Length = 740
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/694 (43%), Positives = 424/694 (61%), Gaps = 14/694 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G IT+ETGK AR A+GAV + +T VL T + R F PLT +YQE +A
Sbjct: 14 KVGDIDITIETGKYARQASGAVTITSGKTTVLVTAVTQPLAIDRGFFPLTCNYQEMAYAA 73
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G +P Y RREG P E E LV R+IDRPIRPLF GF EVQ++A+VLS+D +PD++A
Sbjct: 74 GRVPGNYFRREGRPSEHETLVSRLIDRPIRPLFADGFADEVQIIATVLSADKSVNPDVLA 133
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNLVYACTREKTLMI 242
SAA +S +P+ GPI R+G + +F++ PT + S LNLV+A TR+ +M+
Sbjct: 134 LTGASAACHISKMPFLGPIVGARVGYVNNEFVLYPTYKGIEEESTLNLVFAATRDAMVMV 193
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A+ +SE + L H + + Q L EK G K E + + +E + +
Sbjct: 194 EGGAKFVSEDIIADALAWGHEQVAPLFDIQDELREKVGVPKIEVETPAQDAELVEFLGDF 253
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC--DEESLQVLPKAVDTVRKRVI 360
A +E T P K R A D Q K A+ ++ DE L+ + + ++ K+++
Sbjct: 254 ITADLEKALTTPE--KMIRYAAKDAAKQKAKDAVADKFPEDEAKLKAVGDVIGSMTKKIV 311
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RI+ EG+R+DGR VRP+ ++G L HGS LF RG+T L TLG+ + QR
Sbjct: 312 RNRIVKEGLRIDGRDTTTVRPLSIQTGVLSQTHGSVLFRRGETSALAVATLGSTRDEQRY 371
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SL+G TKRFMLHY+FPP+C+ E G +RREVGHG LAE+A+ VLP DFP+T+
Sbjct: 372 DSLLGDATKRFMLHYNFPPYCVGEARMLRGTSRREVGHGALAERAISPVLPNAEDFPFTI 431
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+M S+GS+SMA+VCG +++LMDAG+P+ E VAG+++GL E D Y +L
Sbjct: 432 RVVSEIMESNGSSSMASVCGATLSLMDAGVPISEPVAGIAMGLCKEDD-------QYFVL 484
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG ED LGDMDFK+AGTR G+TAIQ+DIK AGIP +++ + L A + R ILDHM
Sbjct: 485 TDILGDEDALGDMDFKVAGTRDGITAIQMDIKIAGIPSEVLKKALYQAKEARTHILDHMG 544
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVV 659
E++ PR + +P++A + D + +R +IGP G + I ET I + D G +++
Sbjct: 545 EELATPRKELSELAPQMAVVHIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISIF 604
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + MEK E V + ++ E G Y G V V E GA VE GQ+G+LH+S+L E
Sbjct: 605 APTLASMEKAKEMVLY-YDQKPEPGKNYLGTVRKVLEVGALVEILPGQEGMLHISQLDFE 663
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
V RV DVV +GQ++ ++CI + G I+LS KA
Sbjct: 664 RVERVEDVVQLGQEVWVKCIALEPGGRIRLSRKA 697
>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
Length = 712
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 440/694 (63%), Gaps = 12/694 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFA 122
++ R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYA 69
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++
Sbjct: 70 VGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMA 129
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A +S AL +SDIP+ GPI +GRI G+F++NPT+++ SD++LV A T++ M+
Sbjct: 130 AMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINMV 189
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A ++ E+ + + H E + + Q + + GK K E KL + + V +
Sbjct: 190 EAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVREM 249
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVRKRVIR 361
AE + + + K R +A++ + + V + E EE D ++L + + + + K +R
Sbjct: 250 AEKDMHSAIQ--VHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 307
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ I E +R DGR+ DE+RP+ E G L HGS LF+RG TQ L TLGA + Q L+
Sbjct: 308 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD 367
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KRFM HY+FP F + E G RRE+GHG L E+AL V+P E DFPYTVR
Sbjct: 368 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV+ S+GSTS A++CG ++A+MDAG+PL+ VAG+++GLV +GE Y IL+
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLV-----KSGE--HYTILS 480
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+ IL+HM
Sbjct: 481 DIQGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS 540
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I+ PR + +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + +
Sbjct: 541 VIAEPRIELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIKQDGTVFISS 600
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + +K + ++ I+ RE++VG IY+G V V+++GAFVE G+ GL+H+SEL+ E
Sbjct: 601 INQEMNDKAKKIIEDIV-REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALER 659
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
V +V DVV +G ++++ I D +G + LS K +
Sbjct: 660 VGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693
>gi|407477523|ref|YP_006791400.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium
antarcticum B7]
gi|407061602|gb|AFS70792.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium
antarcticum B7]
Length = 739
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/698 (41%), Positives = 429/698 (61%), Gaps = 21/698 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
E+G R +T+E G++A+ ANGA ++ ET VL+TV +SK DF PLTV+Y+EK +A
Sbjct: 11 ELGGRPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKDLDFFPLTVNYEEKLYAA 70
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP +++REG P E +L R+IDRPIRPLFP GF H++QV +VLSSD P++ A
Sbjct: 71 GKIPGGFLKREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDNSPEVAA 130
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMID 243
S AL +SDIP+ GPI + IGR+ G FI+NP++ + + SD++L A T+ M++
Sbjct: 131 MIGASIALSISDIPFDGPIAGVTIGRVDGAFIINPSLSQAAASDIDLQVAGTKHAVNMVE 190
Query: 244 VQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLA 303
A+E+SE+ + + L H + Q + GK+K Y +S E + ++ A
Sbjct: 191 AGAKEVSEEAMLEAILLGHDVIKTLIAFQEEIVAAVGKEKFAYTVSSFDETLVSRLKTEA 250
Query: 304 EAHIEAVFTDPSYSKFERGEALD-KIGQDVKKALEEECDEES-----LQVLPKAVDTVRK 357
A + A + E +A D I + + K +++ ++S L + ++ K
Sbjct: 251 LAEVTAAV------QVEEKQARDLAINEVISKYIDQYAADDSITEAQLAEVSGVLNKFVK 304
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+R+ I + VR DGR L E+RP+ E G LP HGS LF+RG TQVL TLG +A
Sbjct: 305 TEVRRLITEDKVRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDA 364
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q ++ L KRFM HY+FPPF + E RRE+GHG L E+ALL VLP E DFP
Sbjct: 365 QIIDGLGLKAEKRFMHHYNFPPFSVGEARPMRAPGRREIGHGALGERALLPVLPSETDFP 424
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ SEV+ S+GS+S A++CG +A+MDAG+PL+ VAG+++GL+ E GE +Y
Sbjct: 425 YTIRLVSEVLESNGSSSQASICGSILAMMDAGVPLKAPVAGIAMGLIKE-----GE--NY 477
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
ILTDI G+EDHLGDMDFK+AGT+ GVTA+Q+D+K GI I+ E LE A GRL IL+
Sbjct: 478 SILTDIQGMEDHLGDMDFKVAGTKDGVTALQMDMKIGGITRQILEEALEQARLGRLHILE 537
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTL 656
HM I+ PR + + +P++ TLK + D +R +IGP G + I +ETG +I + DGT+
Sbjct: 538 HMNSVIAEPRVELSKYAPKIVTLKINPDKIRDVIGPGGKVINSIIDETGVKIDIDQDGTV 597
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + ++ + + + ++ I+ RE+ +G + G V V++ GAFVE G+ L+H+SEL
Sbjct: 598 FIASTDQDGINRARQLIEDIV-REVVIGEEFDGTVRRVEKLGAFVELFKGKDALVHISEL 656
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ E V + DVV +G +L +R D +G + S K +
Sbjct: 657 ALERVGQTEDVVKLGDKLKVRVTEVDDKGRVNASHKVL 694
>gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
2581]
gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
2581]
Length = 710
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 444/703 (63%), Gaps = 18/703 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
K+ FE G +TLETG+IAR A+GAV++ MD+T VL TV + K + + F PL+V YQE
Sbjct: 5 KKTFEYGRSTVTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSVHYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 65 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHD 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL +S +P+ GPIG R+G + +NP+++EL+ S+LN+V A T +
Sbjct: 125 PDIAAMIGTSAALAISGVPFNGPIGAARVGFTEEHGYFLNPSVEELASSELNMVVAGTEK 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A E+ E ++ + H E + LA +AGK + +++ + +
Sbjct: 185 AVLMVESEANELLEDEMLGAVLYGHQEMQVAINAIQELAAEAGKPRWDWQAPAENTALKD 244
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDT 354
+++ EA + + TD K +R +AL + + + L E D + + A +
Sbjct: 245 AMASGFEAKVGEAYRITD----KMQRQDALAALKDEAVEQLAGEEDGKFDADEVKGAFAS 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ KRV+R R++ R+DGR L VRP+ E G+LP HGS++F+RG+TQ + TLG
Sbjct: 301 LEKRVVRSRVVKGEPRIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTL 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ +ESL G RF+LHY+FPP+C+ E G G RRE+GHG LA + + A+LP E+
Sbjct: 361 RDAQLIESLEGERKDRFLLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGVEAMLPSED 420
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + D
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDED------ 474
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ + L+ AH+ RL
Sbjct: 475 -GFAVLTDILGDEDHLGDMDFKVAGSAEGVTALQMDIKIEGINEEIMEQALQQAHEARLH 533
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SD 653
IL+ M I R + N+P +AT+K D + +R +IG GA+ RKI E+TG I + D
Sbjct: 534 ILEQMNTVIGQSREEVSENAPSMATIKIDPEKIRDVIGKGGAMIRKICEDTGASIDLDDD 593
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ + A+ +S + ++ V I E+G +Y+G V + ++GAFV G GL+H+
Sbjct: 594 GTVRIYAEEKSAAKAAIDTV-LAITAVPEIGKLYRGKVVRIADFGAFVNIIPGTDGLVHI 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSP 756
S++ E V+ V D ++ G + ++ + D R +KL++K ++P
Sbjct: 653 SQIVPERVNDVRDYLNEGDEPIVKVLDIDNRNRVKLTIKEITP 695
>gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis
HAW-EB4]
gi|257096707|sp|B0TQ97.1|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis
HAW-EB4]
Length = 704
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 285/692 (41%), Positives = 436/692 (63%), Gaps = 12/692 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQEK +
Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+ +V+S D + P++
Sbjct: 71 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEV 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G + G++I+NPT+ +L S L L A T LM
Sbjct: 131 ISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGTDSAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + + H + ++ L + K ++ + E + K+ +
Sbjct: 191 VESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWAAPVQDETLVAKIKD 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL E + + + + + ++ K+V+R
Sbjct: 251 LAEAGLTEAYQ--IEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLGSLEKKVVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RIIA R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ+++
Sbjct: 309 GRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 369 SIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 429 IVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 482 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQ 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ T+K + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 542 AIGSHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG +Y G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 602 SNGEATKEAIRRIEEITA-EVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ VSD + VGQ++ ++ + D +G ++LS+K
Sbjct: 661 VANVSDYLEVGQEVKVKVMEVDRQGRVRLSMK 692
>gi|445063946|ref|ZP_21376074.1| polyribonucleotide nucleotidyltransferase [Brachyspira hampsonii
30599]
gi|444504672|gb|ELV05306.1| polyribonucleotide nucleotidyltransferase [Brachyspira hampsonii
30599]
Length = 715
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/697 (41%), Positives = 447/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPDGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL SDL+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELHTSDLDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+A+E+SE+ + LAH E KY++ Q +A G QK E +L ++ V+
Sbjct: 189 EAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLVKTVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
A IEA +P +K R E++D ++++ ++ ++E L K + ++ + ++R+
Sbjct: 249 AKIEAANYNPDKTK--RNESMDNAFDEIEEYIKTTTEDEKLISQVKGICHSIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ + +R DGR LDE+RPI +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKSMRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLP ++ FPYTVRV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKDKFPYTVRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y+ILTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKILTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD ++ I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIDATI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
++ D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 TSAGEISDF-APKYKTMNVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K ++ ++ + ++ EVG +Y G+V +K++GAF+E G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTIKLINAYV-KDPEVGEVYDGIVKDIKDFGAFIEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ + DV+ G LS KA+ +P
Sbjct: 658 NVEEVLKIGDEVKVKIL--DVKGGKYSLSRKALLEKP 692
>gi|357404301|ref|YP_004916225.1| polyribonucleotide nucleotidyltransferase [Methylomicrobium
alcaliphilum 20Z]
gi|351716966|emb|CCE22631.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylomicrobium alcaliphilum
20Z]
Length = 694
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/703 (41%), Positives = 436/703 (62%), Gaps = 17/703 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
+ ++EF+ G +L+TLETG+IAR A+GAV++ M+ T +L TV K +S DF PLTV
Sbjct: 1 MNPIRKEFQYGDQLVTLETGEIARQADGAVMIDMEGTTLLVTVVGKKEANSGGDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK FA G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQ++A+VLS +
Sbjct: 61 NYQEKSFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFTNEVQIIATVLSLN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DP+I A SAAL +S +P+ GP+G R+G GQ+++NPT L+ S L LV A
Sbjct: 121 PEVDPEIPALIGASAALSISGLPFNGPVGAARVGYKAGQYLLNPTPSSLAESQLELVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A+ +SE+ + + H + + LA K ++ + +
Sbjct: 181 TEHAVLMVESEAQCLSEEVMLGAVLFGHEQMQTAIVAIKELAAMVNKAPMAWQPVAANTE 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV--KKALEEECDEESLQVLPKAV 352
V EA I+A + P K R E L +I K +E+ E ++ + +
Sbjct: 241 LESLVVAEVEAGIKAAYQVPE--KLVRQEQLKEIRNAAVDKLTADEQYSESDIRGI---I 295
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ + K+++R I+ EG R+DGR L VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 296 ENLEKKIVRGSILEEGKRIDGRDLKTVRPISIRTGVLPRTHGSALFTRGETQALVVATLG 355
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
++Q +++L G + FMLHY+FPP+C+ E G RRE+GHG LA++ + AVLP
Sbjct: 356 TERDSQVIDALEGEYRESFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVQAVLPN 415
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
++FPY VRV SEV S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GL+ E D
Sbjct: 416 MDEFPYVVRVVSEVTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGD---- 471
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +L+DI+G EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ LE A +GR
Sbjct: 472 ---QFAVLSDIMGDEDHLGDMDFKVAGSEEGVTALQMDIKIDGITAEIMKTALEQAKQGR 528
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M + +S R Q +PR+ + K D +R +IG GA R I E+TG I ++
Sbjct: 529 LHILGEMNKSLSETRGQMSDYAPRIISFKIDPSKIREVIGKGGATIRSITEQTGASIDLT 588
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DG + V + ++ E+ ++ I E+EVG Y+G V + ++GAFV G+ GL+
Sbjct: 589 DDGIVKVASVDKQAGEEARRLIEEITA-EVEVGKTYEGKVARLMDFGAFVTILPGKDGLV 647
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+S++S E V +VSD +S G + ++ + D +G ++LS+KAV
Sbjct: 648 HISQISDEHVDKVSDKLSEGDVVKVKVLEIDRQGRVRLSMKAV 690
>gi|407716832|ref|YP_006838112.1| polyribonucleotide nucleotidyltransferase [Cycloclasticus sp. P1]
gi|407257168|gb|AFT67609.1| Polyribonucleotide nucleotidyltransferase [Cycloclasticus sp. P1]
Length = 688
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/701 (41%), Positives = 442/701 (63%), Gaps = 16/701 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTV 114
+ + K+EF+ G + ++ ETG+IAR A+GAV++ +D T VL T V +G F PLTV
Sbjct: 1 MNSVKKEFQFGHQTVSFETGEIARQADGAVLVEIDGTIVLVTAVGKREGGENNSFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +REG P E+E L R+IDRPIRPLFP G+ +E QV+A+V+S +
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYKNETQVIATVISLN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ DPDI A SAAL +S +P+ GPIG R+G I G++ +NP+ + L+ S L+LV A
Sbjct: 121 PEVDPDIPALLGASAALAISGLPFEGPIGAARVGYINGEYALNPSKNALAESKLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T + LM++ +A + E + + H + ++ LAE+ GK + E+ +
Sbjct: 181 TEDAVLMVESEADCLPEDIMLGAVTFGHEQMQAAIQAINELAEQVGKPRMEWVAPEKDQT 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT 354
LEKV++LA A I +T K +R L ++ V LE+E EE ++ +
Sbjct: 241 LLEKVADLATAGIADAYT--ILVKLDRQVKLQELRTSVLAQLEDEDPEEVKEIF----SS 294
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ K+ +R+ +++ R+DGR L VRPI+ +G LP HGS+LF+RG+TQ L TLG
Sbjct: 295 LEKKHVRELVLSTKKRIDGRDLSTVRPIHVRTGVLPRAHGSALFTRGETQALVVATLGTD 354
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ ++++ G FMLHY+FPP+C+ E G RRE+GHG LA++ + AVLP +
Sbjct: 355 RDAQMIDAVEGEYRDHFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVLPSQE 414
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DF Y +RV +EV S+GS+SMA+ CG S+ALMDAG+P++ VAG+++GL+ E D
Sbjct: 415 DFSYVLRVVAEVTESNGSSSMASTCGTSLALMDAGVPIKSPVAGIAMGLIKEGD------ 468
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
++ +L+DILG EDHLGDMDFK++GT GVTA+Q+DIK GI +I+ LE A GRL
Sbjct: 469 -EFAVLSDILGDEDHLGDMDFKVSGTDSGVTALQMDIKIQGITHEIMSNALEQAKAGRLH 527
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD- 653
IL+ M ++S R + +PR+ TLK D +R +IG G R I EETG I ++D
Sbjct: 528 ILEKMNSDLSQAREEMSDFAPRILTLKIDPAKIRDVIGKGGVTIRAITEETGASIDITDE 587
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + V + +R EK L++++ I E+EVG IY+G V + ++GAFV G+ GL+H+
Sbjct: 588 GIVKVASVDREAGEKALKRIEDITA-EVEVGKIYEGKVVRLMDFGAFVSILPGKDGLVHI 646
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
S++S E V +VSD +S G ++++ + D +G ++LS+K +
Sbjct: 647 SQISEERVEKVSDKLSEGDVVNVKVLEVDRQGRVRLSMKEI 687
>gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae
ATCC BAA-1498]
Length = 733
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/711 (41%), Positives = 437/711 (61%), Gaps = 28/711 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R + LETGKIAR A+GA++ ET VL+TV S+K ++F PLT
Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y++RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKNYAVGKIPGGYLKRESRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI RIG GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A E+ E + + + I+LAE A K+ +++ LS+
Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSK------FERGEALDKIGQDVKKALEEECDEES 344
+ + LE V E + ++T K F + E ++K Q+ +K E D+
Sbjct: 241 LEKDMLEMV----EQDLRDIYTITDKQKRHAALDFLKEEVINKFTQETEKNCEFNTDQ-- 294
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
+ ++ +++R+ I+ G R+DGR L +VR I E G LP HGS+LF+RG+TQ
Sbjct: 295 ---IATVFKQLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQ 351
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
L TLG + Q ++SL G + F+LHY+FPPF + E+G+ RRE+GHG LA +
Sbjct: 352 ALVIATLGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWR 411
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
A+ +LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+
Sbjct: 412 AIHPMLPTKESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLI 471
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
E K + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+
Sbjct: 472 KEG-------KQFAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIA 524
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
L A GR+ IL+ M + ++ R++ SPR+ + D +R +IG G + R+I E+
Sbjct: 525 LAQAKDGRIHILNEMAKALARARSELSEFSPRIEMMNIPVDKIRDVIGAGGKVIREIVEK 584
Query: 645 TGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEF 703
TG +I++ DGT+ + + + +E + I+ E EVG IY+G V + E+GAFV F
Sbjct: 585 TGAKINIEDDGTIKIASSDLKTIEAAKNWILSIVD-EPEVGAIYQGTVVKIAEFGAFVNF 643
Query: 704 NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG I+LS+K V
Sbjct: 644 FGSRDGLVHISQLAVERVAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
Length = 713
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 434/703 (61%), Gaps = 21/703 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ + G +TLETGKIAR A+G V+ + ET V++ VT +K +DF PLTV YQE
Sbjct: 6 KKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G +P + +RE P E+E L R+IDRPIRPLF GF HE VM +VLS D D
Sbjct: 66 KYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSHDLVND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS------LSDLNLVY 232
PDI+A ATSAAL +S P+ GPI R+G + G++I+NP +D++ L+LV
Sbjct: 126 PDIVALIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T++ +M++ +A E++E+++ + AH + + I LAE K+ + S
Sbjct: 186 AGTKDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVCDLIISLAEDCAKEPFNFTPPDYS 245
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+ V E + A F K ER A+ + +K L +E E+ Q L A
Sbjct: 246 D-LYAAVKAAGEEQMRAAFA--IRDKQERTHAISAAREAIKAKLSDEQLED--QNLGSAF 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ V+R ++ G R+DGR+LDE+RPI CE+G LP HGSSLF+RG+TQ L TLG
Sbjct: 301 KKLESTVLRGDVVKNGNRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTTLG 360
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G F+LHY+FPP+ + E G+ RRE+GHG LA +AL AVLPP
Sbjct: 361 TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGAPGRREIGHGKLAWRALQAVLPP 420
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
DFPYTVR+ SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GLV E D S
Sbjct: 421 ATDFPYTVRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS-- 478
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR
Sbjct: 479 ----FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGR 534
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M + +S + ++PR+ T++ D +R +IG G + R+I E +G ++ ++
Sbjct: 535 LHILGEMNKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + N ++K + + I+ E E G +Y G V + ++GAFV F G + GL+
Sbjct: 594 DEGIIKIASPNGESIKKAYDMIWSIVA-EPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLV 652
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++ + ++ SDV+ GQ + ++ +G D RG ++LS+K V
Sbjct: 653 HVSQIENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVV 695
>gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|123747829|sp|Q493T3.1|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 699
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/709 (40%), Positives = 447/709 (63%), Gaps = 24/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLP 111
+L+ +F+ G + L+ G IAR AN AV++ M +T VL TV SS + VR DF P
Sbjct: 1 MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSS--NQVRLEQDFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
L V+YQE+ +A G P + RREG P E E L R+IDRPIRPLFP GF ++VQV+A+V+
Sbjct: 59 LVVNYQERTYAAGKFPGGFFRREGRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVV 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S + + +PDI+A SAAL LSDIP+ GPIG R+G I Q+++NPT ELS S L+LV
Sbjct: 119 SVNPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
+ T LM++ ++ +SEK++ + H + + +L +K GK K + +
Sbjct: 179 ISGTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEV 238
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-----EEECDEESLQ 346
+ +S L E+ + ++ + K ER +D I +D+ K + DE+ +
Sbjct: 239 NISLKTYLSELYESRAQDIYC--FFDKKERHAQVDSIKKDIVKTVLNSYQHAAVDEKEIM 296
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
L ++ + + IR RI+ +R+DGR D +R I ++G LP HGS+LF+RGDTQ L
Sbjct: 297 YL---LNYLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQAL 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
VTLG +AQ ++ L G RF+LHY+FPP+C+ E+G RRE+GHG LA++ +
Sbjct: 354 VAVTLGTERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGM 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
LAV+P N+FPYT+RV SE+ S+GS+SMA++CG S+ALMDAG+P++ VAGV++GL+ E
Sbjct: 414 LAVMPNANEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKAAVAGVAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
+ D+ +L+DI+ EDH+GDMDFK++G+R G+TA+Q+DIK GI DII L+
Sbjct: 474 GN-------DFVVLSDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALK 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A RLQILD ME+ I P + + +PR+ ++K + D ++ +IG G++ R + EET
Sbjct: 527 KAKNARLQILDVMEQIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETN 586
Query: 647 GRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
I + D G + +VA + ++ + +++ I +E+G +Y G V+ + E+GAFV
Sbjct: 587 TIIDIEDNGIIKIVALDYDKAKQAIRRINDITA-NVEIGAVYTGKVSHIVEFGAFVTILS 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G++GL+H+S++S +++V+D + +GQ++ ++ + D +G I+LS+K V
Sbjct: 646 GKEGLVHISQISERRINKVTDYLKLGQKVLVKVLEIDRQGRIRLSMKGV 694
>gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase, partial [Klebsiella sp.
MS 92-3]
gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
Length = 684
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 283/680 (41%), Positives = 431/680 (63%), Gaps = 16/680 (2%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP + RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT +EL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ ++E +V+ LAE+ + + TD
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDG 373
K ER +D I + L E + L + + + K V+R R++A R+DG
Sbjct: 242 ----KQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDG 297
Query: 374 RQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFML 433
R+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G T F+
Sbjct: 298 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLF 357
Query: 434 HYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGST 493
HY+FPP+ + E G RRE+GHG LA++ +LAV+P +FPYTVRV SE+ S+GS+
Sbjct: 358 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSS 417
Query: 494 SMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDM 553
SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+DILG EDHLGDM
Sbjct: 418 SMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD-------NFVVLSDILGDEDHLGDM 470
Query: 554 DFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRN 613
DFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 471 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF 530
Query: 614 SPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEK 672
+PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A + + + +
Sbjct: 531 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRR 590
Query: 673 VDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQ 732
++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +GQ
Sbjct: 591 IEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 649
Query: 733 QLSLRCIGQDVRGNIKLSLK 752
++ ++ + D +G ++LS+K
Sbjct: 650 EVPVKVLEVDRQGRVRLSIK 669
>gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana
ATCC 700345]
gi|257096708|sp|A8H735.1|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC
700345]
Length = 704
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 285/691 (41%), Positives = 434/691 (62%), Gaps = 12/691 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G +TLETG IAR A+ AV+ M +T VL TV K + RDF PLTV+YQEK +
Sbjct: 11 FQYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+ +V+S D + P++
Sbjct: 71 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEV 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G + G++I+NPT+ +L S L L A T LM
Sbjct: 131 ISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGTESAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + + H + ++ L + K ++ E + K+ +
Sbjct: 191 VESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWSAPAQDETLVAKIKD 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K +R + + K+AL E + + + + + ++ K+V+R
Sbjct: 251 LAEAGLTEAYQ--IEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLGSLEKKVVR 308
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII+ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ+++
Sbjct: 309 GRIISGQPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKID 368
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 369 SIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVR 428
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 429 IVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 481
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ ILD M+R
Sbjct: 482 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVMDR 541
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS R ++PR+ T+K + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 542 AISGHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIAS 601
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG +Y G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 602 SNGEATKEAIRRIEEITA-EVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 660
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSL 751
V+ VSD + VGQ++ ++ + D +G ++LS+
Sbjct: 661 VANVSDYLEVGQEVKVKVMEVDRQGRVRLSM 691
>gi|407697671|ref|YP_006822459.1| polyribonucleotide nucleotidyltransferase [Alcanivorax dieselolei
B5]
gi|407255009|gb|AFT72116.1| Polyribonucleotide nucleotidyltransferase [Alcanivorax dieselolei
B5]
Length = 697
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/704 (42%), Positives = 432/704 (61%), Gaps = 28/704 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
++E + G+ + LETG+IAR A AV++ + +T+VL TV K D + F PLTV+YQE
Sbjct: 6 RKEIQYGADTVVLETGQIARQATAAVMVTIGDTQVLVTVVGKKEADPGKGFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K ++ G IP +++REG P E+E L R+IDRPIRPLFP GF +EVQ++A+V+SS+ QD
Sbjct: 66 KTYSTGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQIVATVMSSNKNQD 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI A TSAAL +S IP+ GPIG R+G G +++NP+ EL S LNLV A T
Sbjct: 126 PDIAAMIGTSAALAISGIPFNGPIGAARVGFKDGMYLLNPSYSELEDSLLNLVVAGTEPA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H E ++ A++ G E++ + +
Sbjct: 186 VLMVESEAQELSEDQMLGAVLYGHQEMQTVIQGIKAFAQEVGAPAWEWQAPAENAELKAA 245
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-------DEESLQV--LP 349
+ +A E + +Y+ E+ K+G+ L + C DE S + +
Sbjct: 246 I----KAKYEGALAE-AYTITEKQARYTKVGE-----LRDACVAEFVTDDENSPEAGEVK 295
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ K V+R+ +++ R+DGR LD+VR I C+ G L HGS+LF+RG+TQ + T
Sbjct: 296 SLFGKIEKNVVREGVLSGKSRIDGRALDQVRAIDCKVGFLNKTHGSALFTRGETQAIVTA 355
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG +AQ +++L G FML Y+FPP+C+ E G RRE+GHG LA + + AV
Sbjct: 356 TLGGMRDAQFIDALEGSRQDHFMLQYNFPPYCVGETGMIGSPKRREIGHGRLARRGVEAV 415
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P E DFPYT+RV SE+ S+GS+SMA+VCG SMALMDAG+PL VAG+++GLV E D
Sbjct: 416 VPNEKDFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLSAPVAGIAMGLVKEEDG 475
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ + LE A
Sbjct: 476 R------FAVLSDILGDEDHLGDMDFKVAGTERGVTALQMDIKIEGITEEIMEKALEQAQ 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GRL IL M + IS R + N+P L T+K +++ +R +IG GA+ R + EET I
Sbjct: 530 RGRLHILGEMAKAISVSRDEVSDNAPTLLTMKINSEKIRDVIGKGGAVIRALTEETSCTI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DG++ + + R + +++ I E EV IY+G VT V ++GAFV G +
Sbjct: 590 DIEDDGSIKIYGETREAALEAQRRIEEITA-EAEVDKIYEGEVTRVVDFGAFVRIMPGTE 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GLLH+S+++ E V +VSD V G + ++ + D RG IKLS+K
Sbjct: 649 GLLHISQIAEERVEKVSDYVKEGDVIRVKVLDVDQRGRIKLSMK 692
>gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae
DFL 12]
gi|187610298|sp|A8LKE7.1|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae
DFL 12]
Length = 711
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/714 (41%), Positives = 441/714 (61%), Gaps = 24/714 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ E G +TLETGKIAR A+G V+ ET V++ VT ++ +DF PLTV Y E
Sbjct: 6 KKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLTVHYNE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +RE P E+E L R+IDRPIRPLF GF +EV V+ +VLS D + D
Sbjct: 66 KYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL------SDLNLVY 232
PDI+A A SAAL +S +P+ GPI R+G G++++NP +D++ L+LV
Sbjct: 126 PDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T++ +M++ +A E+SE ++ ++ H + ++ I LAE A K+ +++ + S
Sbjct: 186 AGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAKEPFDFQPADYS 245
Query: 293 EQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
E KV E + A F TD K ER A+ + L +E E++ L
Sbjct: 246 E-LYAKVKAAGEDQMRAAFAITD----KQERVTAISAARDAILATLSDE--EQTDPNLGS 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A+ + ++R ++ G R+DGR LD VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 299 ALKKLESSILRGDVVKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTT 358
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G F+LHY+FPP+ + EVG+ RRE+GHG LA +AL AVL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P DFPYT+R+ SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GL+ E D S
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
Y +LTDILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A
Sbjct: 479 ------YAVLTDILGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKA 532
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + +S R+Q ++PR+ T++ D +R +IG G + R+I E +G ++
Sbjct: 533 GRLHILGEMSKALSEGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVD 592
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ DG + + + N ++K E + I+ E E G +Y G V + ++GAFV F G + G
Sbjct: 593 INDDGIIKIASANGEAIKKAYEMIHSIVA-EPEEGKVYTGTVVKIVDFGAFVNFFGKRDG 651
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVK 763
L+HVS++ + ++ SDV+ GQ++ ++ +G D RG ++LS+K V ++K
Sbjct: 652 LVHVSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIK 705
>gi|352104781|ref|ZP_08960534.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. HAL1]
gi|350598703|gb|EHA14813.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. HAL1]
Length = 722
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/712 (41%), Positives = 443/712 (62%), Gaps = 24/712 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MD+T VL TV + K + + F PL+V YQE
Sbjct: 11 KKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKEANPSQPFFPLSVHYQE 70
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 71 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSTDRNHD 130
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL +S +P+ GPIG R+G + + +NPT++EL+ S+L++V A T +
Sbjct: 131 PDIAALLGTSAALSISGVPFSGPIGAARVGFNEEKGYFLNPTVEELATSELDMVVAGTEK 190
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E ++ + H E + L +AGK + E++ + E+ +
Sbjct: 191 AVLMVESEAKELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRWEWQAA---EENVA 247
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK------- 350
+ +A+A EA D +Y ++ + D + + +A+E+ +E V K
Sbjct: 248 LKAAMADA-FEAKVGD-AYRITDKMQRQDALAELKAQAIEQLAADEGEPVNDKFSKDDVK 305
Query: 351 -AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A + KRV+R R++ R+DGR VRP+ E G LP HGS++F+RG+TQ +
Sbjct: 306 GAFAGLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGVLPKAHGSAVFTRGETQAIAVA 365
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG ++Q +ESL G RFMLHY+FPP+ + E G G RRE+GHG LA + + A+
Sbjct: 366 TLGTLRDSQLIESLEGERKDRFMLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAM 425
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP E+ FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 426 LPAEDAFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDAD- 484
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +LTDILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ L+ A
Sbjct: 485 ------GFAVLTDILGDEDHLGDMDFKVAGSEEGITALQMDIKIEGINEEIMELALQQAL 538
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL+ M IS R+ N+P +AT+K D D +R +IG GA RKI E+TG I
Sbjct: 539 TARLSILEQMNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASI 598
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A++++ ++ ++ V I E E+G +Y G V + ++GAFV G
Sbjct: 599 DLDDDGTVRIYAEDKAAAKRAIDTV-LAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTD 657
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
GL+H+S++ E V+ V D ++ G + ++ + D R +KLS+K ++ +A
Sbjct: 658 GLVHISQIVAERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSMKEITEEEKA 709
>gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911]
gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911]
Length = 706
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/689 (42%), Positives = 436/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGA ++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+GGPI + +GRI G+F++NPT+++ + SD++LV A T++ M++ A
Sbjct: 135 SLALSVSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDMHLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q ++ + GK+K E KL I KV AE +
Sbjct: 195 EVPEETMLEAIMYGHEEIKRLISFQEQIVSEVGKEKTEIKLYEIDADIESKVREAAEKDM 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDVKKALEE-ECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R A+ + V EE E D+E+++ + K +D + K +R+ I
Sbjct: 255 VSAIQ--VQEKHAREAAIKTVKDAVLAQYEEQEADDETIKQVKKVLDKLVKAEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR LD +RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYTVR+ SEV
Sbjct: 373 EEKRFMHHYNFPNFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GL+ D Y ILTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGDY-------YSILTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR+QILD M I+ P
Sbjct: 486 EDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKAGRMQILDSMLATIAEP 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
+ + R +P++ T+ + D +R +IGP G KI EETG +I + DGT+ + + ++ +
Sbjct: 546 KKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVDQEM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ I+ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NDKAKKIIEDIV-REVEVGQMYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DV+S+G +L ++ D +G + LS KAV
Sbjct: 665 DVLSLGDELLVKVTEIDKQGRVNLSRKAV 693
>gi|383814863|ref|ZP_09970281.1| polynucleotide phosphorylase/polyadenylase [Serratia sp. M24T3]
gi|383296355|gb|EIC84671.1| polynucleotide phosphorylase/polyadenylase [Serratia sp. M24T3]
Length = 705
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/707 (40%), Positives = 444/707 (62%), Gaps = 17/707 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L+ +F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLT
Sbjct: 1 MLKATVRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RRE P E E L R+IDRPIRPLFP F +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGKIPGSFFRREARPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINNQYVLNPTADELLESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + + L + GK K +++ +++
Sbjct: 181 GTQGAVLMVESEAEVLSEEQMLGAVVFGHDQQQIVINEINSLVAEVGKPKWDWQPEVVNA 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ +++ +EA + + TD K ER ++ I +V +L E + +
Sbjct: 241 ELHARIAAKSEALLGDAYRITD----KQERYARVNVIKDEVTASLLSEDETLDAGEISDL 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R+++ R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TL
Sbjct: 297 LGAIEKNVVRSRVLSGAPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTTRDAQNLDELMGAKTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
DFPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E
Sbjct: 417 KFEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE----- 471
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE ++ +L+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ L A
Sbjct: 472 GE--NFVVLSDILGDEDHLGDMDFKVAGSSEGITALQMDIKIEGITREIMQAALSQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL M + IS R + +PR+ T+K + D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMNQAISESRGDISQFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY+G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKISATDNEKAKHAIRRIEEITA-EIEVGRIYQGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSP 756
+H+S+++ + V +V+D +++GQ++ ++ + D +G ++LS+K A +P
Sbjct: 649 VHISQIADKRVEKVTDYLTMGQEVPVKVLEVDRQGRVRLSIKEATTP 695
>gi|448747669|ref|ZP_21729325.1| Polyribonucleotide nucleotidyltransferase [Halomonas titanicae BH1]
gi|445564781|gb|ELY20897.1| Polyribonucleotide nucleotidyltransferase [Halomonas titanicae BH1]
Length = 724
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/706 (41%), Positives = 440/706 (62%), Gaps = 22/706 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MD+T VL TV + K + + F PL+V YQE
Sbjct: 13 KKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKEANPSQPFFPLSVHYQE 72
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 73 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSTDRNHD 132
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL +S +P+ GPIG R+G + + +NPT++EL+ S+L++V A T +
Sbjct: 133 PDIAALLGTSAALSISGVPFSGPIGAARVGFNEEKGYFLNPTVEELATSELDMVVAGTEK 192
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E ++ + H E + L +AGK + E++ + ++
Sbjct: 193 AVLMVESEAKELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRWEWQAAEENQALKA 252
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL-----EEECDEESLQVLPK 350
+++ EA + + TD K +R +AL ++ + L E D+ S +
Sbjct: 253 AMADAFEAKVGDAYRITD----KMQRQDALAELKDQAIEQLAADEGEPVNDKFSKDDVKG 308
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A ++ KRV+R R++ R+DGR VRP+ E G LP HGS++F+RG+TQ + T
Sbjct: 309 AFASLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGVLPKAHGSAIFTRGETQAIAVAT 368
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG ++Q +ESL G RFMLHY+FPP+ + E G G RRE+GHG LA + + A+L
Sbjct: 369 LGTLRDSQLIESLEGERKDRFMLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAML 428
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E+ FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 429 PSEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDPD-- 486
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ L+ A
Sbjct: 487 -----GFAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMELALQQALT 541
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL+ M IS R+ N+P +AT+K D D +R +IG GA RKI E+TG I
Sbjct: 542 ARLSILEQMNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASID 601
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A++++ ++ ++ V I E E+G +Y G V + ++GAFV G G
Sbjct: 602 LDDDGTVRIYAEDKAAAKRAIDTV-LAITAEAEIGKLYHGKVVRIADFGAFVNIMPGTDG 660
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
L+H+S++ E V+ V D ++ G + ++ + D R +KLS+K +S
Sbjct: 661 LVHISQIVAERVNNVRDFLNEGDDVVVKVLDIDNRNRVKLSMKEIS 706
>gi|433521584|ref|ZP_20478279.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
61103]
gi|432260357|gb|ELL15616.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
61103]
Length = 706
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ EV+ + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEVNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|336450011|ref|ZP_08620468.1| polyribonucleotide nucleotidyltransferase [Idiomarina sp. A28L]
gi|336283168|gb|EGN76375.1| polyribonucleotide nucleotidyltransferase [Idiomarina sp. A28L]
Length = 702
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/697 (41%), Positives = 439/697 (62%), Gaps = 18/697 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A GAV+ MD+T VL TV K + DF PLTV+YQE+
Sbjct: 6 KQFQYGQHTVTLETGAIARQATGAVMASMDDTTVLVTVVGKKEARADVDFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L R+IDRPIRPLFP GFY+EVQV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSENETLTCRLIDRPIRPLFPDGFYNEVQVIATVISLNPEVSP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A TSAAL +S IP+ GPIG R+G + ++++NPT ELS S+L+LV A T
Sbjct: 126 DIVALIGTSAALAISGIPFNGPIGAARVGVVNNEYVLNPTPTELSTSELDLVVAGTEAAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE + + H + + A + K +++ +E + +
Sbjct: 186 LMVESEANLLSEDVMLGAVMYGHEQMQSVVSAINEFAAEVNTPKWDWQAPAKNEPLIAAI 245
Query: 300 SNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
LAE I + TD K G AL ++ ++K EE D+E + +
Sbjct: 246 KELAEGKIGEAYRITDKGERKAALGVALKEVIVELKAKGEEINDKEVGDIF----HALES 301
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
+V+R RI A R+DGR+ D +R I +G LP +HGSS+F+RG+TQ + TLG +A
Sbjct: 302 KVVRTRITAGEPRIDGREPDMIRAINVGTGVLPRVHGSSVFTRGETQAIVAATLGTERDA 361
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPENDF 476
Q ++ ++GP T RFMLHY+FPP+C+ E G VG+ RRE+GHG LA++ +LAV+P ++F
Sbjct: 362 QNIDEIMGPRTDRFMLHYNFPPYCVGETGM-VGVPKRREIGHGRLAKRGVLAVMPSVDEF 420
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGD-------K 473
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AG+ G+TA+Q+DIK GI +I+ + L A RL IL
Sbjct: 474 FVVLSDILGDEDHLGDMDFKVAGSSTGITALQMDIKIEGITKEIMQQALAQAKAARLHIL 533
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M++ IS R +PR +K + + +R +IG GA+ R++ E TG I + DGT
Sbjct: 534 SVMDQAISTARDDVSDFAPRFHIMKINPEKIRDVIGKGGAVIRELTESTGTTIEIDDDGT 593
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + + + +++++ + E+EVG IY+G V + ++GAFV G+ GL+H+S+
Sbjct: 594 IKIAATDDASAQNAVKRIEALTA-EVEVGRIYEGKVARIVDFGAFVTILPGKDGLVHISQ 652
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S + V V++ ++VGQ + ++ + D +G ++LS+K
Sbjct: 653 ISDKRVEDVNEYLTVGQTVPVKVLEIDRQGRVRLSMK 689
>gi|333913086|ref|YP_004486818.1| polyribonucleotide nucleotidyltransferase [Delftia sp. Cs1-4]
gi|333743286|gb|AEF88463.1| Polyribonucleotide nucleotidyltransferase [Delftia sp. Cs1-4]
Length = 753
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/699 (40%), Positives = 437/699 (62%), Gaps = 14/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR A+GAV++ +D+T VL+TV +SK S +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GFY++V V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G I G++++NP + S ++LV A T LM
Sbjct: 131 AALIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++ E + + H + +E L +AGK ++ E+ + KV+
Sbjct: 191 VESEAQQLPEDVMLGAVVFGHEQGRIAIEAIHELVREAGKPVWDWVAPAKDEELIAKVAA 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAVDTVRKRVI 360
L + + + +K R +A + VK L + E + ++V D + R++
Sbjct: 251 LGDEALRTAYQ--IRNKQSRTQACREAYAAVKAGLTAQGVEFDGVKVEGMLFD-IEARIV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR+
Sbjct: 308 RSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL A LP + +FPYT+
Sbjct: 368 DALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKEEFPYTI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------RFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ + + +P+L T+K + + +R +IG G+ R + EETG +I + DGT+T+
Sbjct: 541 EAMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + ++ +++ I E+E+G IY+G VT + ++GA V G+ GLLH+S+++HE
Sbjct: 601 SSDAAKADEAKRRIEEITA-EVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V RV+D + GQ + ++ + D +G +KLSLKA++ RP
Sbjct: 660 RVERVADYLQEGQIIKVKVMETDEKGRVKLSLKALTERP 698
>gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
OF4]
gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
OF4]
Length = 704
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/705 (41%), Positives = 449/705 (63%), Gaps = 20/705 (2%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E ++ F I R +T+ETG+ A+ ANGAV++ +T VLSTVT+SK +F PLT
Sbjct: 1 MEQERQIFSIDWAGRELTVETGQFAKQANGAVLVRYGDTAVLSTVTASKEPKNLNFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLFP GF +EVQV++ V+S
Sbjct: 61 VNYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D ++ A +S AL +SDIP+ GPI + +GR G+ I+NPT ++L SD++LV A
Sbjct: 121 DQNCSSEMAAMIGSSLALSISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESDIDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q + + AGK+KKE +L +
Sbjct: 181 GTKDAINMVEAGADEVPEETMLEAIMYGHDEIKRLVAFQEEVVQAAGKEKKEIQLKQVDA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLPK 350
+ V NLAEA ++ K ER A+D + + + + EEE +E + +VL K
Sbjct: 241 ELESAVRNLAEADLKKAVQ--VQEKHERQAAIDAVMKPIIEKYEEEQEELVGDVREVLQK 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
V K +R+ I E VR DGR +DE+RP+ + LP HGS LF+RG TQ L T
Sbjct: 299 VV----KEEVRRLITVEKVRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICT 354
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LGA + Q L+ L +KRFM HY+FP F + E G G RRE+GHG L E+AL ++
Sbjct: 355 LGALGDVQILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPII 414
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P ENDFPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV + +
Sbjct: 415 PSENDFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHL 474
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
T +LTDI G+ED LGDMDFK+AGT+ GVTA+Q+DIK +GI +++ + LE A +
Sbjct: 475 T-------VLTDIQGMEDALGDMDFKVAGTKEGVTALQMDIKISGINREVLEQALEQAKR 527
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ ILD+M IS R++ +P++ T+ + D +R +IGP G + KI EETG +I
Sbjct: 528 GRMVILDNMLSAISESRSELSEYAPKIMTMHVNPDKIRDVIGPSGKMINKIIEETGVKID 587
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + + E+ + ++ I+ RE+EVG Y G V V+++GAFVE G+ G
Sbjct: 588 IEQDGTVYISSVDSKMNEQARKIIEDIV-REVEVGQTYLGKVKRVEKFGAFVELFKGKDG 646
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ E +++V DVVS+G ++ +R D +G + LS K +
Sbjct: 647 LVHISQLAEERINKVEDVVSIGDEILVRVTEIDNQGRVNLSRKVI 691
>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
Length = 711
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/704 (41%), Positives = 438/704 (62%), Gaps = 24/704 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG +AR A AV++ MD+T V +V K ++V +DF PLTV+YQE+
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKK-EAVEGQDFFPLTVNYQERT 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + PD
Sbjct: 69 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+ TSAAL +S IP+ GPIG R+G I GQ ++NP+ EL+ S L+LV A T L
Sbjct: 129 IVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVVAGTESAVL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+++ + + H + ++ A + ++ + K++
Sbjct: 189 MVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEENTALTAKIA 248
Query: 301 NLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV---- 355
LAEA +EA ++++R + +I +V L E +E + PK + T+
Sbjct: 249 ELAEAKLVEAYQITEKMARYDR---IHEISAEVSATLLAENEELN----PKEIHTIFHDL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K V+R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 302 EKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQR 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+AQ ++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++
Sbjct: 362 DAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 422 FPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEED------- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL I
Sbjct: 475 DFVVLSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M++ IS R + +PR+ T+K D ++ +IG GA+ R++ EETG I + DG
Sbjct: 535 LSVMDQAISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + A + + + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S
Sbjct: 595 TIKIAATSGEQAQDAIRRIEQITA-EVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+++ + + +VSDV+S GQ++ ++ + D +G ++LS+K +P
Sbjct: 654 QIADKRIEKVSDVLSEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 697
>gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium
baculatum DSM 4028]
gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium
baculatum DSM 4028]
Length = 736
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/703 (40%), Positives = 442/703 (62%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+T + +G I +E GK+A A+GAV + +T VL T T D V DFLPLT +
Sbjct: 4 FQTTRRTIPMGDSEIIIEHGKLALQASGAVTVQWGDTVVLVTATHQALDRVVDFLPLTCN 63
Query: 116 YQEKQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
YQE ++ G +P Y RRE G P E E L R++DRPIRPLFP G +E+QV+A+V+SSD
Sbjct: 64 YQEMLYSAGRVPGNYFRREVGRPSEHETLTSRLMDRPIRPLFPKGCTNEIQVIATVISSD 123
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
++ DI+A S AL +S+IP+ GPI IR+G G+F++NPT EL+ S LN++ A
Sbjct: 124 KERSADILAMLGASTALHISEIPFAGPIAAIRVGYRDGKFLLNPTATELATSQLNMILAG 183
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
+R+ +M++ A+ +SE + + H + L+ Q L ++ G++K +
Sbjct: 184 SRDAVVMVEGGAQFLSEDIMTEAVAWGHAQLGPLLDAQEELRKELGREKFTVTPPTEDTE 243
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAV 352
+E V+ LA A + P K +R +A K+ Q++ +AL + E E ++ + + +
Sbjct: 244 LIEAVAGLATAPLTEALAVPG--KMDRRDAKKKVKQNLMEALMAKYAETPERIRGVGEIM 301
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ + K+++R+RI+ + +R+DGR L VRP+ E G LP HGS++F+RG+T+ LCT TLG
Sbjct: 302 EKLEKKIVRQRIMTDKIRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLG 361
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ + QR+E+L G ++RF++HY+FPP+ + E RRE+GHG L+E+AL VLP
Sbjct: 362 STRDEQRIETLAGDTSRRFLMHYNFPPYSVGEARMLRAPGRREIGHGALSERALNPVLPE 421
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+ FP+T+RV S++M S+GS+SMA+VCGG++ALMDAG+P++ +AG+++GL+ E D
Sbjct: 422 PDAFPFTIRVVSDIMESNGSSSMASVCGGTLALMDAGVPIKTPIAGIAMGLIKEGD---- 477
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+Y +LTDILG EDHLGDMDFK+AG+R GVT+IQ+DIK AGIP +++ + L A R
Sbjct: 478 ---EYLVLTDILGDEDHLGDMDFKVAGSRDGVTSIQMDIKIAGIPAEVMQKALHQAKDAR 534
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
+ ILD ME I+APR + + +P++ + D +R +IGP G + I E T I +
Sbjct: 535 VHILDQMEALIAAPRGELSKFAPQMDIVHISQDKIREVIGPGGKNIKAICEATKADIDID 594
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G +++ A + + K E V + ++ E+ Y G+V + ++GAF+E G +GL
Sbjct: 595 DSGKISIFAPDSVSLAKAREMVLY-YDQKAELNKDYDGIVKKIMDFGAFIEILPGLEGLC 653
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+S+L+ + V+ V+DVV G + +R I + G IKLS KA+
Sbjct: 654 HISQLARDRVNVVTDVVQEGDAIRVRVIDIEPSGRIKLSRKAI 696
>gi|407785042|ref|ZP_11132191.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
gi|407204744|gb|EKE74725.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
Length = 710
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/705 (41%), Positives = 438/705 (62%), Gaps = 25/705 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ + G +TLETGKIAR A+G V+ + ET V++ VT +K +DF PLTV YQE
Sbjct: 6 KKSIQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKAQKPGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G +P + +RE P E+E L R+IDRPIRPLF GF +EV VM +VLS D D
Sbjct: 66 KYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS------LSDLNLVY 232
PD++A A SAAL +S P+ GPI R+G + G++I+NP +D++ L+LV
Sbjct: 126 PDVVAMIAASAALTISGAPFRGPIAGCRVGFVDGEYILNPEVDDMQNLRSNPEQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T++ +M++ +A E+SE ++ + AH + ++ I LAE K+ E+ + +
Sbjct: 186 AGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEDCAKEPFEFAVPNYA 245
Query: 293 EQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK 350
E V E + A + TD K ER A+ D+K L E D+ + + L
Sbjct: 246 E-LFAAVKAAGEDKMRAAYAITD----KQERVAAVSAAKDDIKATLTE--DQLADENLGS 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A+ + V+R ++ EG R+DGR LD+VRPI CE+G LP HGS+LF+RG+TQ L T
Sbjct: 299 ALKKLESSVLRGTVVKEGKRIDGRALDQVRPIVCETGLLPRTHGSALFTRGETQGLVVTT 358
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G F+LHY+FPP+ + EVG+ RRE+GHG LA +AL AVL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P DFPYT+R+ SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GLV E D
Sbjct: 419 PAATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLEDD-- 476
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + ILTDILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A
Sbjct: 477 -GE---FAILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKQALAQAKA 532
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + +S ++PR+ T++ D +R +IG G + R+I E +G ++
Sbjct: 533 GRLHILGEMNKSLSGAGAF-SAHAPRIETMQIPVDKIREVIGSGGKVIREIVEMSGAKVD 591
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ DG + + + N ++K + + I+ E E G +YKG V + ++GAFV F G + G
Sbjct: 592 INDDGIIKIASANGEAIQKAYDMIYSIVA-EPEEGKVYKGKVVKLVDFGAFVNFFGKRDG 650
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+HVS++ + ++ SDV+ GQ + ++ +G D RG ++L +K V
Sbjct: 651 LVHVSQIENRRLNHPSDVLKEGQDVYVKLLGFDDRGKVRLGMKMV 695
>gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella
schoenbuchensis R1]
Length = 733
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/707 (41%), Positives = 437/707 (61%), Gaps = 20/707 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI R+G GQ+++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + ++ I+LAE A K+ +++ +S+
Sbjct: 181 GTENAVLMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPRDFIPEDLSD 240
Query: 294 QTLEKVS-NLAEAHIEAVFTDPSYSKFERGEALDKIGQDV----KKALEEECDEESLQVL 348
LE + E ++ +T K ER A+D I +V +EE C+ + Q+
Sbjct: 241 --LETTMLGMVEKDLQKAYT--ITDKQERHTAIDAIKAEVVDKFMSKIEENCEFNADQI- 295
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
++ +++R+ I+ G R+DGR L VR I E G LP HGS+LF+RG+TQ L
Sbjct: 296 ATVFKHLQAKIVRQNILDTGKRIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVI 355
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 356 ATLGTSEDEQYIDSLTGTYKETFLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAIHP 415
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP ++ FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 416 MLPTKDSFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE-- 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
GE + IL+DILG EDHLGDMDFK+AGT+ G+T++Q+DIK GI +I+ LE A
Sbjct: 474 ---GE--RFAILSDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALEQA 528
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
GR+ IL+ M + +++ R + SPR+ + D +R +IG G + R+I E+TG +
Sbjct: 529 KDGRIHILNEMSKALTSARDELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEQTGAK 588
Query: 649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I++ D G + + + + +E + I+ E E+G IY+G V E+GAFV F G +
Sbjct: 589 INIEDNGAIKIASTDAKAIEAAKRWIHSIVD-EPEIGSIYQGTVVKTAEFGAFVNFFGSR 647
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
GL+H+S+L+ E V + +D+V G ++ ++ +G D RG I+LS+K V
Sbjct: 648 DGLVHISQLASERVEKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|417823768|ref|ZP_12470360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE48]
gi|340048397|gb|EGR09319.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE48]
Length = 709
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/693 (41%), Positives = 431/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQF++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + I DV AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHAISADVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
Length = 704
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 301/697 (43%), Positives = 433/697 (62%), Gaps = 22/697 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G + +TLETG+IAR A+GAV++ ++ T VL TV + K RDF PL V Y EK +
Sbjct: 8 FQYGGQTVTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP + +RE P E+E L R+IDRPIRPLFP GF +EVQV+ +V+S+D DPDI
Sbjct: 68 SVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSADKHIDPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREKTL 240
A TSAAL +S P+ GPIG R+G + +I+NPT D+L S L +V A T + L
Sbjct: 128 PAMIGTSAALAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGSKLEMVVAGTEDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ QA +++E + + AH E ++ LA +AGK ++ I E L V
Sbjct: 188 MVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKPSWNWEAPAIDEALLGAVE 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKAVDTVRK 357
+ + + +Y ++ E ++G+ +++A E E S ++ + V K
Sbjct: 248 GMVKDDL-----GEAYRITDKSERYARVGE-IREACVAELATEGGPSADLVKEYFKKVEK 301
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++RKRIIA R+DGR VR I CE L HGS+LF+RG+TQ + VTLG+ +A
Sbjct: 302 SMVRKRIIAGEPRIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDA 361
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPENDF 476
Q +++L G FMLHY+FPP+ + E G RVG +RRE+GHG LA + L AVLP +F
Sbjct: 362 QIIDALEGERRDPFMLHYNFPPYSVGEAG-RVGFTSRREIGHGRLARRGLAAVLPDLEEF 420
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMA+VC GS+A+M AG+PL+ VAG+++GLV E +
Sbjct: 421 PYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGN-------Q 473
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI I+ LE A + RL IL
Sbjct: 474 FAVLTDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHIL 533
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M ++APRT N+P + TLK D+D +R +IG GA+ R I E +G + + DGT
Sbjct: 534 GQMNAVLAAPRTVTSENAPSMVTLKVDSDKIRDIIGKGGAMIRSITEHSGATVDIEDDGT 593
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V ++++ +K + ++ I E EVG IY G V + ++GAFV G+ GLLH+S+
Sbjct: 594 VRVFGQDQASRDKAVAMIEEITA-EAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQ 652
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+++E V VSD +S GQ++ ++ + D RG IKLS+K
Sbjct: 653 IANERVENVSDHLSEGQEVRVKVLDVDQRGRIKLSIK 689
>gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
Length = 709
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 436/704 (61%), Gaps = 16/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ E E E G R +TLE G++AR A+G+V++ ET V+ V S K DF PLT
Sbjct: 3 MFEKHTVEIEWGGRPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y EK +A G IP + +RE P E E LV R+IDRPIRPLF G+ ++ QV +VLS
Sbjct: 63 VNYIEKAYAAGKIPGGFFKREARPSENETLVCRLIDRPIRPLFAEGYKNDTQVTCTVLSH 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A ATSAAL +S +P+ GPI R+G I G +++NP +DE+ SDL+L+ A
Sbjct: 123 DMENNPDIVAMIATSAALTISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPESDLDLIVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A +SE+ + + H E ++ I+LAEK K+ + + + S+
Sbjct: 183 GTTDAVLMVESEANVLSEEVMLGAVMFGHEEFQPVIDAVIQLAEKCAKEPRPHTVPDNSK 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVK-KALEEECDEESLQVLPKAV 352
E V+ L IE +T K +R A+D+ K K L EE +E
Sbjct: 243 LEGE-VTKLVGKAIEKAYT--IADKQDRYAAIDEAKATAKDKFLSEESTDEEKTTFGGVF 299
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
V+ V+R II R+DGR LD VR I + G LP HGS+LF+RG+TQ + TLG
Sbjct: 300 KQVQANVVRGSIIKTKKRIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLP 471
+ Q +++L G + F+LHY+FPP+ + E G R+G +RRE+GHG LA +A+ AVLP
Sbjct: 360 TGDDEQFIDALTGTYKENFLLHYNFPPYSVGETG-RIGFTSRREIGHGKLAWRAVKAVLP 418
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ DFPYT+R SE+ S+GS+SMATVCG S+A MDAG+PL+ VAG+++GL+ E D
Sbjct: 419 SKEDFPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKAPVAGIAMGLIKEGD--- 475
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
D+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI DI+ LE A G
Sbjct: 476 ----DFAVLSDILGDEDHLGDMDFKVAGTAEGITSLQMDIKITGITEDIMKIALEQAKGG 531
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL+ M + ++ R++ +PR+ + K D +R +IG G + R+I E+TG ++++
Sbjct: 532 RETILNEMSKALTEGRSELGEFAPRIESFKIPTDKIREVIGSGGKVIREIVEKTGAKVNI 591
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ V + + ++ L+ + I + EVG IY+G V ++GAFV F G + GL
Sbjct: 592 EDDGTVKVASSDGKAIDAALKWIRSIT-DDPEVGEIYQGTVVKTVDFGAFVNFFGAKDGL 650
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V + +DVV+ G ++ ++ +G D RG ++LS+K V
Sbjct: 651 VHISQLADERVGKTTDVVNEGDKVWVKLMGFDDRGKVRLSMKVV 694
>gi|338998849|ref|ZP_08637510.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. TD01]
gi|338764231|gb|EGP19202.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. TD01]
Length = 720
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/706 (42%), Positives = 437/706 (61%), Gaps = 22/706 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MDET VL TV + K + + F PL+V YQE
Sbjct: 11 KKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVAKKEANPNQPFFPLSVHYQE 70
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 71 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHD 130
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL ++ +P+ GPIG R+G Q + +NPT++EL S+L++V A T
Sbjct: 131 PDIAALLGTSAALSIAGVPFNGPIGAARVGFNEEQGYFLNPTVEELKTSELDMVVAGTEN 190
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E ++ + H E + L +AGK + +++ + +
Sbjct: 191 AVLMVESEAQELLEDEMLGAVLFGHQEMQVAVSAIKELVAEAGKPRWDWQPTEENVALKT 250
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEAL-----DKIGQDVKKALEEECDEESLQVLPK 350
++N EA + + TD K R +AL + + Q V EE + S +
Sbjct: 251 AMANAFEAKVGDAYRITD----KMARQDALSALKDEAVAQLVAAEGEETEGKFSKDDVKG 306
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A + KRV+R R++ R+DGR VRP+ E G LP HGS++F+RG+TQ + T
Sbjct: 307 AFAGLEKRVVRSRVVKGEPRIDGRDNTTVRPLAIEVGVLPKTHGSAVFTRGETQAIAIAT 366
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG ++Q +ESL G RFMLHY+FPP+C+ E G G RRE+GHG LA + + A+L
Sbjct: 367 LGTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFFGGPKRREIGHGRLARRGVQAML 426
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E+ FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 427 PSEDVFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLVKDED-- 484
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
Y +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ + L+ A+
Sbjct: 485 -----GYAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMEKALQQAYD 539
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R+ IL M IS RT N+P +AT+K D D +R +IG GA RKI E+TG I
Sbjct: 540 ARISILAQMNDVISQSRTDVSENAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASID 599
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A++++ +K ++ V I E E+G +Y G V + ++GAFV G G
Sbjct: 600 LDDDGTVRIYAEDKAAAKKAIDTV-LAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTDG 658
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
L+H+S++ E V+ V D ++ G + ++ + D R +KLS+K ++
Sbjct: 659 LVHISQIVAERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSIKEIT 704
>gi|392373664|ref|YP_003205497.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Methylomirabilis
oxyfera]
gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Methylomirabilis
oxyfera]
Length = 695
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 301/697 (43%), Positives = 445/697 (63%), Gaps = 31/697 (4%)
Query: 70 ITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEKQFAQGVI 126
+++E G++AR A+GAV++ +T VL TV +SK +R DF PLTVDYQE+ +A G I
Sbjct: 14 LSIEAGRVARQADGAVLVRYGDTVVLVTVVASK--QMRQGIDFFPLTVDYQERAYAAGKI 71
Query: 127 PNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANA 186
P + +REG P ++E L R+IDRP+RPLFP G+ ++VQ++A+VLS+D + DPD++A
Sbjct: 72 PGGFFKREGKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQNDPDVLAVLG 131
Query: 187 TSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQA 246
SAAL ++ IP+ GPIG +R+GR+ G+ ++NPT ++ SD+++V A TR +M++ A
Sbjct: 132 ASAALTIAPIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDIDMVVAGTRSAVVMLEAGA 191
Query: 247 REISEKDLEAGLRLAHPEAVKYLEPQI----RLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
EI E + + H K ++P I LA+ +K +++S Q ++VS L
Sbjct: 192 NEIPEDVMFEAIEFGH----KGIQPMIDMVSELAQALRVEKVPFQVSPPDPQLRDRVSAL 247
Query: 303 AEAHIEAV--FTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
A + A+ + + R + D +V A +E D+ V+ + + +
Sbjct: 248 ARQGLRALAGIAEKEEHRSHRQQLFD----EVMAAFSDEPDDRK-GVVRGLFEAIEHDEL 302
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ I+ EG R DGR L++VRPI E G LP HGS+LF+RG TQ L T TLG + QRL
Sbjct: 303 RRMILEEGRRADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRL 362
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G TKRFMLHY+FPPF + EV G RRE+GHG LAE+ALLA LPP+ +F YT+
Sbjct: 363 DDLEGEGTKRFMLHYNFPPFSVGEVRFMRGPGRREIGHGALAERALLAALPPKEEFSYTL 422
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ S+++ S+GS+SMATVCG S++LMDAG+P++ VAGV++GLV E + + IL
Sbjct: 423 RIVSDILESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAA-------IL 475
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI+GLEDHLGDMDFK+AGTR G+TA+QLDIK GI ++ + L A + RL ILD M+
Sbjct: 476 TDIIGLEDHLGDMDFKVAGTRKGITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMD 535
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
R ++ PR+ +PR+ T+ D +R +IGP G + R I ++G +I VS DG + +
Sbjct: 536 RALTEPRSNISVYAPRIITIMIPVDKIRDVIGPGGKVIRGIVADSGAKIDVSDDGRIEIA 595
Query: 660 AKNRSVMEKVLEKVDFIIGREI-EVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ + +K L + I+ E+ EVG IY+G V + ++GAFV+ G GLLH+S++S
Sbjct: 596 SVDGEAAQKALSIISKIV--EVPEVGKIYQGKVVKIMDFGAFVQILPGTDGLLHISQISE 653
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
+ V RV DV+S G+++ ++ I D G I+LS K VS
Sbjct: 654 QRVKRVEDVLSEGEEIMVKVIDVDKNGKIRLSRKEVS 690
>gi|424658516|ref|ZP_18095773.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-16]
gi|408055000|gb|EKG89954.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-16]
Length = 709
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/693 (41%), Positives = 432/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQF++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + +I DV AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHEISADVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
Length = 707
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/701 (41%), Positives = 435/701 (62%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 10 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 70 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 130 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + ++K +E+ L KV
Sbjct: 190 VESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELLAKVRG 249
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 250 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 308 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 368 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 600 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAP 699
>gi|374620585|ref|ZP_09693119.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HIMB55]
gi|374303812|gb|EHQ57996.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HIMB55]
Length = 765
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/699 (42%), Positives = 432/699 (61%), Gaps = 26/699 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G + +TLETG+IAR A+G+V++ M T VL TV + + + + F PL+V Y EK +
Sbjct: 8 FQYGGQEVTLETGRIARQASGSVMVTMGTTSVLCTVVAEQKEKPGQAFFPLSVHYIEKAY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP + +REG P E+E L R+IDRPIRPLF GF +EVQV+ +V+S+D DPDI
Sbjct: 68 SVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVVCTVMSADLDTDPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRI-CGQFIVNPTMDELSLSDLNLVYACTREKTL 240
A TSAAL +S P+ GPIG R+G +++NP L S L++V A TR+ L
Sbjct: 128 PAMIGTSAALAISGCPFNGPIGGARVGFTEADGYLLNPGYAALKASKLDMVVAGTRDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E+SE + + AH E ++ L E+AGK + ++ + ++E+ +V
Sbjct: 188 MVESEAKELSEDQMLGAVLFAHQEMQTVIKAIDELVEEAGKPRWDWSAAEVNEELRAQVE 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD------T 354
A A + +Y E+ +++GQ +E+ EE P A D
Sbjct: 248 EAAGADL-----GEAYRITEKAARYERVGQVRDAVVEQLATEEG----PSADDVKDEFKA 298
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ KR++R+RI+A R+DGR VR I CE L HGSSLF+RG+TQ + VTLG+
Sbjct: 299 LEKRIVRQRILAGEPRIDGRDGRTVRQIACEVDVLDNAHGSSLFTRGETQAIGAVTLGST 358
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+AQ +++L G FMLHY+FPP+ + E G+ RRE+GHG LA + L AVLP E+
Sbjct: 359 RDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRIGATGRREIGHGRLARRGLAAVLPTED 418
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+RV SE+ S+GS+SMA+VC GS+A+M AG+PL+ VAG+++GLV E +
Sbjct: 419 DFPYTIRVVSEITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGN------ 472
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI I+ LE A RL
Sbjct: 473 -QFAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIEGINEQIMEVALEQALHARLH 531
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M + + R N+P + TLK D+D +R +IG GA R+I EE+G + ++ D
Sbjct: 532 ILGQMNAVLDSAREITSENAPSMVTLKVDSDKIRDIIGKGGATIRQITEESGATVDINDD 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
GT+ V +N+ + ++ + I E EVG +Y G V + ++GAF+ G+ GLLH+
Sbjct: 592 GTVKVFGQNQGARDAAVDMI-MAITAEAEVGAVYTGKVARIVDFGAFITILPGKDGLLHI 650
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
S++++E V VSD ++ GQ+++++C+ D RG IKLS+K
Sbjct: 651 SQIANERVENVSDYLTEGQEVTVKCLDVDQRGRIKLSIK 689
>gi|390454020|ref|ZP_10239548.1| polynucleotide phosphorylase [Paenibacillus peoriae KCTC 3763]
Length = 700
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/697 (41%), Positives = 438/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV + ET VL TVT+S+ DF PLTV+Y+E+ +
Sbjct: 6 EMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNYEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P ++ +L R+ DRPIRPLFP GF ++VQV+ V+S D +P+I
Sbjct: 66 AVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GR+ GQF++NP + + SDL LV A T++ +M
Sbjct: 126 AAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQKTSDLYLVVAGTKDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV-S 300
++ + EI E+ + + H E + +L + AGK+K + KL + ++ +V +
Sbjct: 186 VEAEGDEIPEEVMLEAIMFGHDEIKNIVAAIEQLVQVAGKEKMQVKLHAVDDKVNSEVRA 245
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKR 358
AE +EAV K R EA+D I + E + E E L+ + + + + K
Sbjct: 246 YAAERLVEAV---KIAEKHARQEAIDAINEATVAHFEAQYIETPELLKDVSEVLYDIVKE 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
+R+ I + VR DGR+L+E+RPI ++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 EVRRLITHDKVRPDGRKLNEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + TKRFM HY+FPPF + E RRE+GHG L E+AL V+P E +FPY
Sbjct: 363 ILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAGV++GL+ + D +
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------- 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI +I+ + L+ A +GRL IL
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDREILQDALKQAREGRLFILGK 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I PR Q +P++ T+ + D +R +IG G + KI EETG +I + DG +
Sbjct: 536 MMEAIQKPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ + EK ++ I+ +E+ VG IY G V ++++GAFVE G+ GL+H+S+LS
Sbjct: 596 IASTNQEMNEKARSIIEGIV-KEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLS 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++V DV+++G ++++ D +G + LS KAV
Sbjct: 655 TERVAKVEDVIAIGDTITVKVTEIDQQGRVNLSRKAV 691
>gi|422909161|ref|ZP_16943813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-09]
gi|341635751|gb|EGS60457.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-09]
Length = 709
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/693 (41%), Positives = 431/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQF++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + I DV AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHAISADVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
Length = 707
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/701 (41%), Positives = 436/701 (62%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 10 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 70 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +I+NPT EL+ S L+LV A T + LM
Sbjct: 130 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLDLVVAGTSKAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + ++K +E+ + KV
Sbjct: 190 VESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRE 249
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 250 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 308 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 368 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPEDFSYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNK-------FAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 600 ATTQEAGDAAKKRIEEITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V VSD + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 659 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAP 699
>gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
CFBP1430]
gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
gi|428783770|ref|ZP_19001263.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
ACW56400]
gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
CFBP1430]
gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC
BAA-2158]
gi|426277485|gb|EKV55210.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
ACW56400]
Length = 710
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/700 (41%), Positives = 439/700 (62%), Gaps = 12/700 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L ++F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS +P+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE+ + + H + ++ L +AGK + +++ ++E
Sbjct: 181 GTQGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+++ AE+ + + K ER +D I + AL E D + +
Sbjct: 241 ALRSRIAAQAESRLSDAYR--ITEKQERYAQVDVIKSETTAALLAEDDTLDAGEISDLLH 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R RI+ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 ALEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ARDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKG 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + +
Sbjct: 419 EAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDN----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR + +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILSVMEQAISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIAATDGDKAKFAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
Length = 709
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/717 (40%), Positives = 438/717 (61%), Gaps = 21/717 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + + A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA +++ R + +I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYAR---IHEISAEVSAALLAENEALDAKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVDEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K D ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQA 776
V +VSD ++ GQ++ ++ + D +G ++LS+K P VE +V V QA
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETP-------VEAAVEVAPQA 708
>gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae
WSM419]
gi|187611291|sp|A6UF34.1|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae
WSM419]
Length = 714
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/715 (41%), Positives = 440/715 (61%), Gaps = 36/715 (5%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ ET K E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PD++A A SAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK------ 287
T++ LM++ +A+E+SE+ + + ++ IRLAE A K+ +E++
Sbjct: 181 GTQDAVLMVESEAKELSEEIMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFEPDDHSA 240
Query: 288 ----LSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE- 342
+ I+E+ L K + E K +R A+D + VK+ E E
Sbjct: 241 LENAMLSIAEEDLRKAYKITE-------------KAQRYAAVDAVKAKVKEHFLPEGVEN 287
Query: 343 --ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSR 400
+ + + ++ +++R I+ R+DGR L VRPI E G LP HGS+LF+R
Sbjct: 288 PAHTAEEIASVFKHLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTR 347
Query: 401 GDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT 460
G+TQ + TLG + Q ++SL G + FMLHY+FPP+ + E G+ RRE+GHG
Sbjct: 348 GETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGK 407
Query: 461 LAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVS 520
LA +A+ +LP FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG++
Sbjct: 408 LAWRAIHPMLPTAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIA 467
Query: 521 VGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDI 580
+GL+ E D + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I
Sbjct: 468 MGLIKEDD-------RFAVLSDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKIAGITEEI 520
Query: 581 ICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRK 640
+ L+ A GR+ IL M + IS R Q +PR+ + D +R +IG G + R+
Sbjct: 521 MKVALDQAKHGRVHILGEMAKAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIRE 580
Query: 641 IEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGA 699
I E+TG +I++ DGT+ + + + +E + + I+ E EVG +Y+G V ++GA
Sbjct: 581 IVEKTGAKINIDDDGTVKIASASGKEIEAARKWIHSIVA-EPEVGQVYEGTVVKTADFGA 639
Query: 700 FVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
FV F G + GL+H+S+L+ E V++ +DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 640 FVNFFGARDGLVHISQLASERVAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|397665362|ref|YP_006506900.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
gi|395128773|emb|CCD06993.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
Length = 729
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/712 (40%), Positives = 439/712 (61%), Gaps = 15/712 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
+E G+ + LETG++AR A+GAV+ M+ T+VL TV K G DF PLTV+YQEK
Sbjct: 6 KEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P + E L+ R+IDRPIRPLFP F++EVQ++A+VLS + + P
Sbjct: 66 FYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A SAAL +S +P+ GPIG R+G G +++NP+ E S L+LV A T++
Sbjct: 126 DIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDAI 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+SE + + H ++ LA + GK K E+K I ++
Sbjct: 186 LMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLKARI 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+++A +EA + K +R + LD++ + AL E DE + V+ + + +
Sbjct: 246 NDVARNEVEAAYL--IKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+ R+DGR VRPI + L HGS LF+RG+TQ + TLG +AQ
Sbjct: 304 VRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ + G RFMLHY+FPP+ + E G+ RRE+GHG LA++AL+AVLP N+FPY
Sbjct: 364 LDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ E D Y +
Sbjct: 424 LRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGD-------RYAV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK +GI +I+ LE A +GR IL M
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTETGITALQMDIKISGITNEIMERALEQALEGRTHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
++ RT+ +++PR+ T+K D +R +IG GA + + E TG I + D G + +
Sbjct: 537 NNALAEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQL 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ ++ +E+ +++ +I EIEVG Y+G V+ + ++GAF+ G+ GLLH+S++
Sbjct: 597 FSPDKMALEEAQKQIKALIA-EIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICA 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSV 770
+ +V +V+ GQ++ + G D +G +KL K +P+A+ K V + V
Sbjct: 656 DRTQKVEEVLQEGQEIEVFVAGIDKQGRVKLEWK---DKPQAEAKEVEDAPV 704
>gi|338813338|ref|ZP_08625467.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
gi|337274697|gb|EGO63205.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
Length = 696
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/694 (42%), Positives = 433/694 (62%), Gaps = 15/694 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQEKQ 120
+ +IG RL+ +E+GK+A+ ANGA ++ +T VL T T+S + DF PLTVDY+E+
Sbjct: 5 QMQIGGRLLVVESGKLAKQANGAALVRYGDTAVLVTATASAEPREGIDFFPLTVDYEERL 64
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
++ G IP +++REG P E +L GR+IDRPIRPLF GF ++VQ++A+VLS D P+
Sbjct: 65 YSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFSEGFRNDVQIVATVLSVDQDNPPE 124
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I A S AL +SDIP+ GPIG +R+GRI QF++NPT+ E S+LNLV A T++ L
Sbjct: 125 IPAMIGASCALSISDIPFQGPIGGVRVGRIAEQFVINPTVKEQEESELNLVVAGTKDAVL 184
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A E+SE + + H + ++ Q + ++ G KKE K+ + V
Sbjct: 185 MVEAGANELSEAVILEAISFGHDVIRQIVDFQEAMVKEIGLPKKELKVYEPQADINQAVR 244
Query: 301 N-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+ E AVF K R E + + D + E ++ + + V K +
Sbjct: 245 EYITEKMRVAVFNS---DKLTREENIKAVKTDGAQHFAEIYPDKGKDI-SYVMQKVLKEI 300
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+RK I + +R DGR+LDEVRPI CE G L HGS LF+RG TQVL TLGA + Q
Sbjct: 301 VRKMITVDKIRPDGRKLDEVRPISCEVGVLARTHGSGLFTRGQTQVLTVTTLGAIGDEQI 360
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ L +KR++ HY+FP + + E G RRE+GHG LAE+AL+ V+PPE++FPYT
Sbjct: 361 LDGLGVEESKRYIHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVIPPESEFPYT 420
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV+ S+GS+SM +VCG +++LMDAG+P++ V+GV++GLV + GE Y I
Sbjct: 421 IRLVSEVLESNGSSSMGSVCGSTLSLMDAGVPIKSPVSGVAMGLVKD-----GEY--YTI 473
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDI G+ED LGDMDFK+AGT GVTAIQ+DIK AG+ DI+ LE A +GR+ IL+ M
Sbjct: 474 LTDIQGMEDALGDMDFKVAGTTKGVTAIQMDIKIAGLTKDILQSALEQAKQGRMHILNTM 533
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
I PR + +PR+ T+ D D +R +IGP G + +KI +ETG I + DG + +
Sbjct: 534 LAVIQQPRPELSPYAPRIITMSIDPDKIRDVIGPGGKIIKKIIDETGVSIDIEDDGKVFI 593
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + +K + ++ ++ RE+EVG Y G VT + +GAF E G++GL+H+S+L+
Sbjct: 594 AAVDMEAGQKAVRIIENLV-REVEVGAAYLGKVTRIMNFGAFAEILPGKEGLIHISQLAR 652
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V++V DVV +G + ++ D +G I LS K
Sbjct: 653 ERVNKVEDVVKIGDEFMVKVTEIDRQGRINLSRK 686
>gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 784
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 429/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++GSR + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L R+IDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GPIG +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMM 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + +E
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVEHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
L + AVFTD + K R EA++KI D ++ L E+ E + ++ + V K + R
Sbjct: 290 LTMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLREKFPEADTYEIIESFNVVAKEIFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + + + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSD 409
Query: 422 SLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
++ G K FMLHY FPP+ NE+GK G+NRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+TVRV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+ VAGV+VGLV++ +P GEI+DY
Sbjct: 468 FTVRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNPDKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +I+
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTTKGITALQADIKLPGIPIKIVMEAIQQASVAKKEIIQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG +S V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTVSQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|406596711|ref|YP_006747841.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
gi|407687652|ref|YP_006802825.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Balearic Sea AD45']
gi|406374032|gb|AFS37287.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
gi|407291032|gb|AFT95344.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Balearic Sea AD45']
Length = 724
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/712 (40%), Positives = 438/712 (61%), Gaps = 14/712 (1%)
Query: 54 KVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPL 112
+++ + F+ G +TLETG IAR A AV+ MD+T VL TV K + +DF PL
Sbjct: 20 QIVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPL 79
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TV+YQEK +A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S
Sbjct: 80 TVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMS 139
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
++ DI++ TSAAL +S IP+ GPIG R+G G++I+N +E + S+L+LV
Sbjct: 140 ANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVV 199
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T LM++ +A +SE + + H + + A + G +K ++ +
Sbjct: 200 AGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDWAPEAEN 259
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+KV LAEA + A + K ER +A+ + +A+ E +E+ + + +
Sbjct: 260 TALKDKVKALAEAEMTAAYQ--ISDKLERKDAVTAATEKALEAILAEDEEQDKKEVLDLL 317
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ V+R RI++ R+DGR +R + +G LP HGS+LF+RG+TQ L TLG
Sbjct: 318 HDLESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLG 377
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQ ++ L G RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P
Sbjct: 378 TERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPS 437
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV D
Sbjct: 438 EEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDD---- 493
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
++ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L+ A + R
Sbjct: 494 ---NFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEAR 550
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL+ M+ I R + +PR+ T+K D D +R +IG GA+ R+I EE+ I +
Sbjct: 551 LHILNVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIE 610
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A R+ + + K++ + EIEVG Y G +T + ++GAFVE G++GL+
Sbjct: 611 DDGTIKIFATERAKADIAISKIEQVTA-EIEVGKTYNGKITRIVDFGAFVEVLPGKEGLV 669
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV--SPRPEAD 761
H+S+++HE V++V+D + GQ + ++ + D + ++LS+K + P P++D
Sbjct: 670 HISQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSIKELLEKPAPKSD 721
>gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
hyodysenteriae WA1]
gi|257096669|sp|C0R0E0.1|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
hyodysenteriae WA1]
Length = 712
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/697 (41%), Positives = 449/697 (64%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP ELS S+L+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+A+E+SE+ + LAH E KY++ Q +A G QK E +L ++ V+
Sbjct: 189 EAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLVKMVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
IE+ +P +K R E++D ++++ ++ + ++E L K + ++ + ++R+
Sbjct: 249 DKIESANYNPDKTK--RNESMDNAFNEIEEYIKTKVEDEKLISQVKGICHSIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ + +R DGR LDE+RPI + +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKCMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLPP++ FPYT+RV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y+ILTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKILTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD ++ I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
+ D +P+ T+ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 ANAGEISDF-APKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K ++ ++ + ++ EVG +Y G+V +K++GAFVE G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTIKLINSYV-KDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ + DV+ G LS KA+ +P
Sbjct: 658 NVEEVLKIGDEVKVKIL--DVKGGKYSLSRKALLEKP 692
>gi|359394194|ref|ZP_09187247.1| Polyribonucleotide nucleotidyltransferase [Halomonas boliviensis
LC1]
gi|357971441|gb|EHJ93886.1| Polyribonucleotide nucleotidyltransferase [Halomonas boliviensis
LC1]
Length = 722
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/706 (41%), Positives = 436/706 (61%), Gaps = 22/706 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MD+T VL TV + K + + F PL+V YQE
Sbjct: 11 KKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKDANPSQPFFPLSVHYQE 70
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 71 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHD 130
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PD+ A TSAAL +S +P+ GPIG R+G + + +NPT++EL S+L++V A T +
Sbjct: 131 PDVAAMLGTSAALSISGVPFNGPIGCARVGFNEEKGYFLNPTVEELKSSELDMVVAGTDK 190
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A+E+ E ++ + H E + L +AGK + E++ + ++
Sbjct: 191 AVLMVESEAQELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRWEWQAAEENQALKA 250
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPK----- 350
+ + EA + + TD K R +AL + + L EE K
Sbjct: 251 AMGDAFEAKVGEAYRITD----KMARQDALSALKDEAVALLVAAEGEEPEGKFAKDDVKG 306
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A ++ KRV+R R++ R+DGR VRP+ E G LP HGS++F+RG+TQ + T
Sbjct: 307 AFASLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGTLPKTHGSAIFTRGETQAIAIAT 366
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG ++Q +ESL G RFMLHY+FPP+C+ E G G RRE+GHG LA + + A+L
Sbjct: 367 LGTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFFGGPKRREIGHGRLARRGVQAML 426
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E+ FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 427 PSEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDPD-- 484
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ L+ A
Sbjct: 485 -----GFAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMELALQQALT 539
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
RL IL+ M IS R+ N+P +AT+K D D +R +IG GA+ RKI E+TG I
Sbjct: 540 ARLSILEQMNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGAMIRKICEDTGASID 599
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + A++++ ++ ++ V I E E+G +Y G V + ++GAFV G G
Sbjct: 600 LDDDGTVRIYAEDKAAAKRAIDTV-LSITAEAEIGKLYMGKVVRIADFGAFVNIMPGTDG 658
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
L+H+S++ E V+ V D ++ G + ++ + D R +KLS+K ++
Sbjct: 659 LVHISQIVAERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSMKEIT 704
>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
Length = 733
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/709 (41%), Positives = 435/709 (61%), Gaps = 24/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T K E E R + LETGKIAR A+GA++ ET VL+TV S+K ++F PLT
Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +RE P E E L+ R+IDRPIRPLF G+ ++ QV+ SV+
Sbjct: 61 VNYQEKNYAVGKIPGGYFKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI+A A+SAAL LS IP+ GPI RIG GQ+I+NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY---KLSM 290
T LM++ +A E+ E + + + I+LAE A K+ +++ LS+
Sbjct: 181 GTENAVLMVESEAHELPEDVMLNAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQ 346
+ L+ + E + +T K R A+D + + V EE C+ + Q
Sbjct: 241 LENNMLKMI----EQDLRDTYTITDKQK--RHAAIDLLKEKVINNFIPEAEENCEFNTDQ 294
Query: 347 VLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
+ ++ +++RK I+ G R+DGR L +VRPI E G P HGS+LF+RG+TQ L
Sbjct: 295 I-ATVFKNLQAKIVRKNILDTGKRIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQAL 353
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E+G+ RRE+GHG LA +A+
Sbjct: 354 VIATLGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAI 413
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP + FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+PL VAG+++GL+ E
Sbjct: 414 HPMLPTKESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKE 473
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 474 -----GE--QFAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALA 526
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR+ IL+ M + ++ R++ SPR+ + D +R +IG G + R+I E+TG
Sbjct: 527 QAKDGRIHILNEMAKALARARSELSEFSPRIEIMNIPVDKIRDVIGSGGKVIREIVEKTG 586
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ DGT+ + + + +E + I+ E EVG IY+G V + E+GAFV F G
Sbjct: 587 AKINIEDDGTIKIASSDLKTIEAAKHWILSIVD-EPEVGSIYQGTVVKIAEFGAFVNFFG 645
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+L+ E V++ +D+V G ++ ++ +G D RG I+LS+K V
Sbjct: 646 SRDGLVHISQLASERVAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|336125013|ref|YP_004567061.1| polyribonucleotide nucleotidyltransferase [Vibrio anguillarum 775]
gi|365539342|ref|ZP_09364517.1| polynucleotide phosphorylase/polyadenylase [Vibrio ordalii ATCC
33509]
gi|335342736|gb|AEH34019.1| Polyribonucleotide nucleotidyltransferase [Vibrio anguillarum 775]
Length = 708
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 283/704 (40%), Positives = 438/704 (62%), Gaps = 16/704 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG IAR A AV++ M++T V +V K ++V +DF PLTV+YQE+
Sbjct: 10 FQYGNHTVTLETGVIARQATSAVMVTMNDTAVFVSVVGKK-EAVEGQDFFPLTVNYQERT 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + PD
Sbjct: 69 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNAFKNEVQVIATVMSVNPDVQPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+ TSAAL +S IP+ GPIG R+G I GQ ++NP+M EL++S L+LV A T L
Sbjct: 129 IVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSMTELAVSRLDLVVAGTDNAVL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+++ A + H + ++ A + ++ + K++
Sbjct: 189 MVESEADNLTEEEMLAAVVYGHDQQQAVIKAINEFAAEVATPAWDWVAPQENTVLNSKIA 248
Query: 301 NLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA +EA ++++R + +I +V K + E E + + + + K V
Sbjct: 249 ELAEAKLVEAYKITEKMARYDR---IHEIAAEVNKVILAEDPEANAKEIHTIFHDLEKTV 305
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ + T TLG +AQ
Sbjct: 306 VRRSIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGTQRDAQI 365
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYT
Sbjct: 366 IDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPYT 425
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +
Sbjct: 426 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGD-------DFVV 478
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNQGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
++ IS R + +PR+ T+K ++ ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 539 DQAISGARAEISEFAPRIYTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKI 598
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + ++ + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++
Sbjct: 599 AATDSAQAKEAIRRIEEITA-EVEVGAIYTGKVARLADFGAFVNILPGKDGLVHISQIAD 657
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
+ + +VSD + GQ++ ++ + D +G ++LS+K +P +V
Sbjct: 658 QRIEKVSDYLKEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEV 701
>gi|400405479|ref|YP_006588338.1| polyribonucleotide nucleotidyltransferase [secondary endosymbiont
of Ctenarytaina eucalypti]
gi|400363842|gb|AFP84910.1| polyribonucleotide nucleotidyltransferase [secondary endosymbiont
of Ctenarytaina eucalypti]
Length = 702
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/704 (40%), Positives = 441/704 (62%), Gaps = 10/704 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K + + F PLT
Sbjct: 1 MLNPIVRKFQYGHHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGEKQAKLGQCFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +E+Q++A+V+S
Sbjct: 61 VNYQERIYAAGRFPGGFFRREGRPSESETLISRLIDRPIRPLFPVGFLNEMQIIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I ++++NPT L+ S L+LV A
Sbjct: 121 NPQVNPDIVAIIGASAALSLSGIPFNGPIGAARVGYINNRYVLNPTQTALAESHLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +AR +SE + + + H + +E +AGK K ++K ++
Sbjct: 181 GTQTGVLMVESEARILSEDQMLSAIVYGHEQQQVVIENINTFVTEAGKPKWQWKAKDVNL 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+++ LA++ + K ER A++ I D+ +L E + ++ + +
Sbjct: 241 DLKTQITKLAKSRFREAYRITE--KQERYTAIESIKADIVASLTHEDENVNIFEIKDILI 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
++ K V+R RI+ R+DGR+ D +R + +G L HGS+LF+RGDTQ L TLG
Sbjct: 299 SLEKTVVRGRILCGEPRIDGRENDMIRRLDMRTGILLRTHGSALFTRGDTQALVATTLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L+G T RF+LHY+FPP+C+ E+G RRE+GHG LA++A+LAV+P
Sbjct: 359 ERDAQNIDELMGERTDRFLLHYNFPPYCVGEIGIVGSPKRREIGHGRLAKRAILAVMPSA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE
Sbjct: 419 SEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +L+DILG ED +GDMDFK+AG+R G+TA+Q+DIK +GI DII L A R+
Sbjct: 474 --RFVVLSDILGDEDRMGDMDFKVAGSREGITALQMDIKISGITRDIIRVALNQAKGARM 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD 653
IL M++ +S+PR +PR+ T+K + D ++ +IG G + R + EETG I + D
Sbjct: 532 HILSLMDKTLSSPRADISALAPRIYTIKINPDKIKDIIGKGGTVIRALTEETGTTIEIED 591
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
VA S + + I EIEVG IY G VT + ++GAFV GG++GL+H+
Sbjct: 592 NGTVKVAAADSDKARYAIRRIEEIAEEIEVGRIYNGKVTRIVDFGAFVGIRGGKEGLVHI 651
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPR 757
S+++ + V +V+D +++GQ + ++ + D +G ++LS+K S R
Sbjct: 652 SQITDQHVEKVTDYLALGQIVQVKVLEVDRQGRVRLSIKEASIR 695
>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
str. Corby]
gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
2300/99 Alcoy]
gi|187610281|sp|A5IHU3.1|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
str. Corby]
gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
2300/99 Alcoy]
Length = 729
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/712 (40%), Positives = 440/712 (61%), Gaps = 15/712 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
+E G+ + LETG++AR A+GAV+ M+ T+VL TV K G DF PLTV+YQEK
Sbjct: 6 KEIVFGNHNLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P + E L+ R+IDRPIRPLFP F++EVQ++A+VLS + + P
Sbjct: 66 FYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A SAAL +S +P+ GPIG R+G G +++NP+ E S L+LV A T++
Sbjct: 126 DIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDAI 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+SE + + H ++ LA + GK K E+K I ++
Sbjct: 186 LMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLKARI 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+++A +EA + K +R + LD++ + AL E DE + V+ + + +
Sbjct: 246 NDVARNEVEAAYL--IKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+ R+DGR VRPI + L HGS LF+RG+TQ + TLG +AQ
Sbjct: 304 VRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ + G RFMLHY+FPP+ + E G+ RRE+GHG LA++AL+AVLP N+FPY
Sbjct: 364 LDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ E D Y +
Sbjct: 424 LRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDR-------YAV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK +GI +I+ + LE A +GR IL M
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
++ RT+ +++PR+ T+K D +R +IG GA + + E TG I + D G + +
Sbjct: 537 NNALAEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQL 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ ++ +E+ +++ +I EIEVG Y+G V+ + ++GAF+ G+ GLLH+S++
Sbjct: 597 FSPDKMALEEAQKQIKALIA-EIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICA 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSV 770
+ +V +V+ GQ++ + G D +G +KL K +P+A+ K V + V
Sbjct: 656 DRTQKVEEVLQEGQEIEVFVAGIDKQGRVKLEWK---DKPQAEAKEVEDAPV 704
>gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
NAS-14.1]
gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
NAS-14.1]
Length = 711
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/703 (41%), Positives = 441/703 (62%), Gaps = 21/703 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ + G +TLETGK+AR A+G+V+ + ET V++ VT ++ +DF PLTV YQE
Sbjct: 6 KKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G +P + +RE P E+E L R+IDRPIRPLF GF +EV VM +VLS D D
Sbjct: 66 KYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLN------LVY 232
PD++A A SAAL +S P+ GPIG R+G G +++NPT+D++ LN LV
Sbjct: 126 PDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T+E +M++ +A E+SE+++ ++ AH + ++ I LAE A K+ +++ S
Sbjct: 186 AGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQPVDYS 245
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+ + V E + A F K ER A+ + +K AL EE E++ L A+
Sbjct: 246 DLS-AAVKAAGEDAMRAAFA--IADKQERTAAVAAARETIKAALTEEQLEDA--NLGSAL 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R ++ G R+DGR+ DE+R I E+G LP HGSSLF+RG+TQ L TLG
Sbjct: 301 KGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLG 360
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G FMLHY+FPP+ + EVG+ G RRE+GHG LA +AL AVLP
Sbjct: 361 TGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPA 420
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
DFPYT+RV SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GL+ E D S
Sbjct: 421 STDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS-- 478
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
Y IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A GR
Sbjct: 479 ----YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGR 534
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
+ IL M + IS + ++PR+ T++ D +R +IG G + R+I E +G ++ ++
Sbjct: 535 VHILGEMNKAISGA-GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + N ++K + + I+ E E G +Y G V + ++GAFV F G + GL+
Sbjct: 594 DEGIIKIASPNGDSIKKAYDMIWSIVA-EPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLV 652
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++ + ++ SDV+ GQ++ ++ +G D RG ++LS+K V
Sbjct: 653 HVSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVV 695
>gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
Length = 714
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 299/712 (41%), Positives = 438/712 (61%), Gaps = 30/712 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQV 347
+ + L V N L EA Y E+ + KA E E E ++
Sbjct: 241 LEAKVLAVVENDLREA----------YKITEKQARYAAVDAAKAKAKEHFFPEGVEETEM 290
Query: 348 LPKAVDTVRK----RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDT 403
L + T+ K +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+T
Sbjct: 291 LAEQFATIFKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGET 350
Query: 404 QVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAE 463
Q + TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA
Sbjct: 351 QAIVVATLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAW 410
Query: 464 KALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGL 523
+A+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++GL
Sbjct: 411 RAIYPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGL 470
Query: 524 VSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICE 583
+ E GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+
Sbjct: 471 IKE-----GE--RFAVLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKV 523
Query: 584 CLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEE 643
LE A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I E
Sbjct: 524 ALEQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVE 583
Query: 644 ETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVE 702
+TG +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV
Sbjct: 584 KTGAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVN 642
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
F G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 643 FFGPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
Length = 711
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/703 (41%), Positives = 441/703 (62%), Gaps = 21/703 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ + G +TLETGK+AR A+G+V+ + ET V++ VT ++ +DF PLTV YQE
Sbjct: 6 KKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G +P + +RE P E+E L R+IDRPIRPLF GF +EV VM +VLS D D
Sbjct: 66 KYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLN------LVY 232
PD++A A SAAL +S P+ GPIG R+G G +++NPT+D++ LN LV
Sbjct: 126 PDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T+E +M++ +A E+SE+++ ++ AH + ++ I LAE A K+ +++ S
Sbjct: 186 AGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQPVDYS 245
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+ + V E + A F K ER A+ + +K AL EE E++ L A+
Sbjct: 246 DLS-AAVKAAGEDAMRAAFA--IADKQERTAAVAAARETIKAALTEEQLEDA--NLGSAL 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R ++ G R+DGR+ DE+R I E+G LP HGSSLF+RG+TQ L TLG
Sbjct: 301 KGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLG 360
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G FMLHY+FPP+ + EVG+ G RRE+GHG LA +AL AVLP
Sbjct: 361 TGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPA 420
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
DFPYT+RV SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GL+ E D S
Sbjct: 421 STDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS-- 478
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
Y IL+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A GR
Sbjct: 479 ----YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGR 534
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
+ IL M + IS + ++PR+ T++ D +R +IG G + R+I E +G ++ ++
Sbjct: 535 VHILGEMNKAISGA-GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593
Query: 653 D-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
D G + + + N ++K + + I+ E E G +Y G V + ++GAFV F G + GL+
Sbjct: 594 DEGIIKIASPNGDSIKKAYDMIWSIVA-EPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLV 652
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++ + ++ SDV+ GQ++ ++ +G D RG ++LS+K V
Sbjct: 653 HVSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVV 695
>gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
gi|404489164|ref|YP_006713270.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|423682218|ref|ZP_17657057.1| polynucleotide phosphorylase [Bacillus licheniformis WX-02]
gi|81385548|sp|Q65JH5.1|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|52348155|gb|AAU40789.1| polyribonucleotide nucleotidyltransferase PnpA [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
gi|383438992|gb|EID46767.1| polynucleotide phosphorylase [Bacillus licheniformis WX-02]
Length = 705
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/689 (42%), Positives = 440/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLST T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKTVDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ +FI+NPT+++L SD++LV A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDIHLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E L I EKV +AE+++
Sbjct: 195 EVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEITLYEIDSDLKEKVRGMAESNL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A+ ++ +V K EEE DEE+L+ + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAISEVKNEVLAKFEEEEHDEETLKQVKDILSQLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +DE+RP+ E G LP HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL ++P E DFPYT+R+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPIVPSEKDFPYTIRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D +Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGD-------NYTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL+ M ++
Sbjct: 486 EDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILESMLSTLAES 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S+
Sbjct: 546 RKELSPYAPKILTMSINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESM 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G +L ++ D +G + LS KAV
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693
>gi|395829692|ref|XP_003787980.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Otolemur garnettii]
Length = 783
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/708 (40%), Positives = 430/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSASQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ Q++ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A + ++D +++ + ++ +L ++ G K+ KL S + +
Sbjct: 230 EASAENVLQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVNKRTPQKLFTPSPEIVNHAHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R +A++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMEKLYAVFTDYKHDKISRDDAVNKIRLDTEEQLKEKFPEVEPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKAD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK G+NRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QIMTAINGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLVTKSDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIAMEAIQLASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVSISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SIFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDSGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|411001077|gb|AFV98805.1| acyl CoA thioester hydrolase [Candidatus Snodgrassella sp.
TA7_36335]
Length = 707
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/707 (41%), Positives = 435/707 (61%), Gaps = 22/707 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A GAV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFY+++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+L+ +P+ GPIG R+G + G++++NPT ++L+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKNQLAQSQLDLVVAGTEKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + +++ + E + KV
Sbjct: 189 VESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVADESLIAKVRE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
LA A I+ F K R LD+ V+ AL EE D + + K V+
Sbjct: 249 LAGATIDEAFK--IKQKQARTAKLDEAWAAVEAALITEETDTLLANQIRGIFKDLEKEVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L T TLG + Q +
Sbjct: 307 RGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VC G ++L++AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL IL M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQ 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ P+ + ++PRL T+K D +R +IG G R + ETG I+++ DGT+T+
Sbjct: 540 EAVKGPQ-ELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A E +++ I E+EVG +Y+G V + GA V G+ GL+H+S++S
Sbjct: 599 ASTSEAGEAAKRRIEEITA-EVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQIS 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV------SPRP 758
H+ V VSD + +GQQ+ ++ + D RG ++LS+KA+ P+P
Sbjct: 658 HDRVKNVSDYLQIGQQVKVKALEIDDRGRVRLSIKALLEKAPQEPKP 704
>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
Length = 706
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 436/701 (62%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEEITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V VSD + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAP 698
>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase [Brucella melitensis bv. 1 str. 16M]
gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
ATCC 23457]
gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|384212520|ref|YP_005601604.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
gi|384409620|ref|YP_005598241.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|384446152|ref|YP_005604871.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis NI]
gi|81851039|sp|Q8YEB7.1|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782709|sp|C0RG51.1|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
23457]
gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
gi|349744141|gb|AEQ09684.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis NI]
Length = 714
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/713 (41%), Positives = 435/713 (61%), Gaps = 32/713 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEE-------ECDE 342
+ + L V N L EA+ K +A K EE E E
Sbjct: 241 LEAKVLAVVENDLREAY-----------KITEKQARYAAVDAAKAKAEEHFFPEGVEETE 289
Query: 343 ESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGD 402
S + ++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+
Sbjct: 290 MSAEQFATIFKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGE 349
Query: 403 TQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLA 462
TQ + TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA
Sbjct: 350 TQAIVVATLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLA 409
Query: 463 EKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVG 522
+A+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++G
Sbjct: 410 WRAIHPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMG 469
Query: 523 LVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIIC 582
L+ E GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+
Sbjct: 470 LIKE-----GE--RFAVLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMK 522
Query: 583 ECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIE 642
LE A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I
Sbjct: 523 VALEQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIV 582
Query: 643 EETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFV 701
E+TG +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV
Sbjct: 583 EKTGAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFV 641
Query: 702 EFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
F G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 642 NFFGPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|410954827|ref|XP_003984063.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase 1, mitochondrial [Felis catus]
Length = 784
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/708 (41%), Positives = 432/708 (61%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++GSR + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L R+IDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GPIG +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMM 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + +E
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVEHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ ++E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKISRDEAINKIRLDTEEQIKEKFPEADTYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
I+ E R DGR L +R I CE ILHGS+LF RG TQVLCTVT + + + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 422 SLV----GPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
++ G K FMLHY FPP+ NE+GK G+NRRE+GHG LAEKAL V+P FP
Sbjct: 410 RIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP--KXFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+ VAGV++GLV++ +P EI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNPDKDEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PRT N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRTSRKENGPVVETIQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFI--IGR-----EIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI I R ++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICRDDQEHQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 722
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/708 (41%), Positives = 444/708 (62%), Gaps = 16/708 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLT 113
+ + F+ G +T+ETG+IAR + GAV+L MD T VL+TV ++G +DF PLT
Sbjct: 24 IFNKVTKTFQWGQHTVTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLT 83
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +REG P E E L R+IDRPIRPLFP GF++EV V+ +S
Sbjct: 84 VDYLEKSYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSL 143
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A A SAAL +S IP+ GPIG R+G + G++++NP S ++LV A
Sbjct: 144 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKDSIMDLVVA 203
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H ++ + L AGK ++K E
Sbjct: 204 GTEAAVLMVESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDAGKPVWDWKAPARDE 263
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAV 352
+ KV + + A + +K R +A DV L+ + E +S++V
Sbjct: 264 ALIAKVDAHGKDKLVAAYQ--IRNKQARTQACRAAYADVFAGLKADGVEFDSVKVEGMLF 321
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
D + +++R +I+A R+DGR VR I +G LP HGSSLF+RG+TQ L TLG
Sbjct: 322 D-IEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLG 380
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLP 471
+AQR+++L G RFMLHY+ PPF E G RVG RRE+GHG LA++AL+AVLP
Sbjct: 381 TERDAQRIDALSGEYEDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALVAVLP 439
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ +FPY++RV SE+ S+GS+SMA+VCGG ++LMDAG+PL+ HVAG+++GL+ E +
Sbjct: 440 TKEEFPYSLRVVSEITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEDN--- 496
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A +
Sbjct: 497 ----RFAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEA 552
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R+ IL M++ ++ RT+ +PRL + K + + +R +IG G++ R + EETG +I++
Sbjct: 553 RVHILGEMQKSMAEARTEVSNFAPRLFSFKINPEKIRDVIGKGGSVIRALTEETGTQINI 612
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+T+ + + + E+ +++ I E+E+G +Y+G +T + ++GA V G+ GL
Sbjct: 613 EEDGTITIASSDPAKAEEAKRRIEQITA-EVEIGKVYEGPITKILDFGALVNLLPGKDGL 671
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
LH+S+++HE V +V+D +S GQ + ++ + D +G IKLS+KA+ RP
Sbjct: 672 LHISQIAHERVEKVTDYLSEGQIVKVKVLETDEKGRIKLSMKALIERP 719
>gi|85542918|sp|Q5RCW2.2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
mitochondrial; AltName: Full=Polynucleotide
phosphorylase 1; Short=PNPase 1; Flags: Precursor
Length = 783
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ + + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R + CE LHGS+LF RG TQVLCTVT +
Sbjct: 350 NIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PRT N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S + E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSALH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
Length = 707
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 436/701 (62%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 10 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 70 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 130 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + ++K +E+ + KV
Sbjct: 190 VESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRE 249
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 250 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 308 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 368 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNK-------FAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 600 ATTQEAGDAAKKRIEEITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V VSD + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 659 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAP 699
>gi|451811633|ref|YP_007448088.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776791|gb|AGF47790.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 700
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/709 (40%), Positives = 443/709 (62%), Gaps = 22/709 (3%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLP 111
KV+++FK G + LETG+IAR ++GAV+ M +T +L+TV S+ + F P
Sbjct: 3 NKVIKSFK----YGLNDVVLETGEIARQSSGAVLASMGDTVILATVVGSQEIKEGQKFFP 58
Query: 112 LTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
LTVDY EK +A G IP + +REG E+E+L R+IDRP+RPLFP FY+EVQ++ VL
Sbjct: 59 LTVDYIEKTYAVGKIPGGFFKREGKSSEKEILTARLIDRPLRPLFPKQFYNEVQIIIHVL 118
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLV 231
S D + DPDI++ +SAAL LS IP+ GPIG IR+G I F++NPT +L S L+LV
Sbjct: 119 SVDPEIDPDIISIIGSSAALALSGIPFNGPIGAIRVGFIENDFVINPTKSQLEKSSLDLV 178
Query: 232 YACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMI 291
A + + LM++ ARE+SE + + H + ++ I L ++AGK + ++K
Sbjct: 179 LAGSSDAVLMVESTARELSESTMLEAIDFGHQQMQVVIDNIIELVKEAGKPEWDWKPKPC 238
Query: 292 SEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ ++ ++ + + + + K +R L +I ++K +++ + L
Sbjct: 239 DQFLVDIINEFSNEKLVSAYN--IKEKQDRSLVLREIRLEIKNFVKDRVGNSDVIPLDST 296
Query: 352 VDTV----RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+D + +++R RI++ R+DGR VRPI G LP HGS+LF+RG+TQ L
Sbjct: 297 IDDIIFNLESKIVRNRILSGEPRIDGRNTRTVRPIDIRLGVLPRAHGSALFTRGETQALV 356
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKAL 466
VTLG + Q ++SL+G +F+ HY+ PPF E+G R+G+ RREVGHG LA +AL
Sbjct: 357 IVTLGTKQDEQIIDSLLGEYRDKFIFHYNMPPFATGEIG-RIGIPKRREVGHGYLARRAL 415
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP DF YT R+ SE+ S+GS+SMA+VCGGS+A+MDAG+P+ +HVAGV++GL+ E
Sbjct: 416 TPMLPDPKDFHYTTRLVSEITESNGSSSMASVCGGSLAMMDAGVPISKHVAGVAMGLILE 475
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
D + ILTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI DI+ L
Sbjct: 476 DDK-------FAILTDILGDEDHLGDMDFKVAGTSDGITALQMDIKIQGITKDIMGIALL 528
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A +GRL IL+ M++ I+ R + SP++ T+K + D +R +IG GA R I EET
Sbjct: 529 QAQEGRLSILEKMKKAINISREELSSYSPKIITIKINPDKIRDVIGKGGATIRAITEETA 588
Query: 647 GRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I +S DG ++V + + ++ +K+ + ++EVG +Y+G + + ++GA V+
Sbjct: 589 TQIDISEDGVVSVAGVDNNNVQNAYKKI-LELTADVEVGSVYEGKILRILDFGAIVQLFP 647
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G+ GLLH+SE+S+ + +SDV+S+GQ++ ++ I D +G +LS KAV
Sbjct: 648 GKDGLLHISEISNNRIQNISDVLSIGQRIKVKVIESDDKGRFRLSAKAV 696
>gi|407683714|ref|YP_006798888.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'English Channel 673']
gi|407245325|gb|AFT74511.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'English Channel 673']
Length = 724
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/712 (40%), Positives = 437/712 (61%), Gaps = 14/712 (1%)
Query: 54 KVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPL 112
+++ + F+ G +TLETG IAR A AV+ MD+T VL TV K + +DF PL
Sbjct: 20 QIVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPL 79
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TV+YQEK +A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S
Sbjct: 80 TVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMS 139
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
++ DI++ TSAAL +S IP+ GPIG R+G G++I+N +E + S+L+LV
Sbjct: 140 ANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYSNGEYILNTRAEEQAESELDLVV 199
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T LM++ +A +SE + + H + + A + G +K ++ +
Sbjct: 200 AGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDWAPEAEN 259
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+KV LAEA + A + K ER +A+ + +A+ E +E+ + + +
Sbjct: 260 TALKDKVKALAEAEMTAAYQ--ISDKLERKDAVTAATEKALEAILAEDEEQDKKEVLDLL 317
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ V+R RI++ R+DGR +R + +G LP HGS+LF+RG+TQ L TLG
Sbjct: 318 HDLESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLG 377
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQ ++ L G RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P
Sbjct: 378 TERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPS 437
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV D
Sbjct: 438 EEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDD---- 493
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
++ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L+ A + R
Sbjct: 494 ---NFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEAR 550
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M+ I R + +PR+ T+K D D +R +IG GA+ R+I EE+ I +
Sbjct: 551 LHILKVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIE 610
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A R+ + + K++ + EIEVG Y G +T + ++GAFVE G++GL+
Sbjct: 611 DDGTIKIFATERAKADIAISKIEQVTA-EIEVGKTYNGKITRIVDFGAFVEVLPGKEGLV 669
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV--SPRPEAD 761
H+S+++HE V++V+D + GQ + ++ + D + ++LS+K + P P++D
Sbjct: 670 HISQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSIKELLEKPAPKSD 721
>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|419823827|ref|ZP_14347361.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|388472066|gb|EIM08855.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
Length = 705
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/689 (41%), Positives = 437/689 (63%), Gaps = 12/689 (1%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+ETG++A+ ANGAV++ +T VLS+ T+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLF GF +EVQV++ V+S D ++ A +
Sbjct: 75 GGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI + +GR+ QFI+NPT+D+L SD++LV A T++ M++ A
Sbjct: 135 SLALCVSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDIHLVVAGTKDAINMVEAGAD 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHI 307
E+ E+ + + H E + + Q + GK+K E KL I + +KV LAE +
Sbjct: 195 EVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLYEIDAELSDKVKALAEEDL 254
Query: 308 EAVFTDPSYSKFERGEALDKIGQD-VKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIA 366
+ K R +A++++ V K EEE D++ ++ + + + + K +R+ I
Sbjct: 255 LKAIQ--VHEKHAREDAINEVKNTVVAKFEEEEHDDDIIKQVKQTLSKLVKNEVRRLITE 312
Query: 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGP 426
E VR DGR +D++RP+ E G L HGS LF+RG TQ L TLGA + Q L+ L
Sbjct: 313 EKVRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVE 372
Query: 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEV 486
+KRFM HY+FP F + E G G RRE+GHG L E+AL V+P E DFPYT+R+ SEV
Sbjct: 373 ESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVSEV 432
Query: 487 MASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGL 546
+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +GE Y +LTDI G+
Sbjct: 433 LESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSGEY--YTVLTDIQGM 485
Query: 547 EDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606
ED LGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR++IL M +
Sbjct: 486 EDALGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILSSMLNTLGEA 545
Query: 607 RTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSV 665
R + + +P++ T+ + D +R +IGP G KI E+TG +I + DGT+ + + + S
Sbjct: 546 RKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDESN 605
Query: 666 MEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS 725
+K + ++ ++ RE+EVG +Y G V ++++GAFVE G+ GL+H+SEL+ E V +V
Sbjct: 606 NQKAKKIIEDLV-REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664
Query: 726 DVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
DVV +G +L ++ D +G + LS KAV
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693
>gi|407794964|ref|ZP_11141982.1| polynucleotide phosphorylase/polyadenylase [Idiomarina xiamenensis
10-D-4]
gi|407210041|gb|EKE79923.1| polynucleotide phosphorylase/polyadenylase [Idiomarina xiamenensis
10-D-4]
Length = 714
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/700 (41%), Positives = 437/700 (62%), Gaps = 12/700 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
++F+ G +TLETG +AR A+GAV+ MD+T VL TV + K ++F PLTV+YQE+
Sbjct: 6 KKFQYGQHTVTLETGVMARQASGAVLASMDDTTVLVTVVAKKEAKEGQNFFPLTVNYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + + P
Sbjct: 66 TYAAGKIPGGFFKREGRPSENETLTARLIDRPIRPLFPEGFMNEVQVIATVVSVNPQIAP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A TSAAL +S P+ GPIG+ R+G + ++++NPT DEL S L+LV A T
Sbjct: 126 DIVAMIGTSAALAISGCPFNGPIGVARVGVLNNEYVLNPTQDELKESSLDLVVAGTEGAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+ +SE + + H + A + G +K E++ ++ KV
Sbjct: 186 LMVESEAQLLSEDVMLGAVVYGHEAQQSVITAINEFAAEVGNEKWEWQAPASNDALHGKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAE I + +K R E L ++ V L EE D + + ++ K V
Sbjct: 246 KALAEDGIGEAYRITEKAK--RYEQLGQLKDSVVAKLVEEDDSIDSGEVGEIFHSIEKDV 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR D VR I +G LP HGSSLF+RG+TQ L T TLG +AQ
Sbjct: 304 VRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSSLFTRGETQALVTATLGTERDAQM 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ ++G T RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P + FPYT
Sbjct: 364 IDDIIGDKTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVQAVMPDHDAFPYT 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D + +
Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEDDK-------FVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AG G+TA+Q+DIK GI +I+ + L A RL IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGNNDGITALQMDIKIDGITREIMEQALAQAKAARLHILTVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTV 658
+ I RT+ +PR T+K ++D ++ +IG GA+ R++ E T I + DGT+ +
Sbjct: 537 DEAIGGHRTELSAYAPRYHTMKINSDKIKDVIGKGGAVIRELTESTNTNIEIQDDGTIKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A +++ + + +++ + ++EVG IY+G V + ++GAFV G+ GL+H+S+++
Sbjct: 597 AATDQADADAAIARIEQLTA-DVEVGRIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
E V+ V++ + VGQ ++++ + D +G I+LS+K + +P
Sbjct: 656 ERVNDVNEYLKVGQTVAVKVLEIDRQGRIRLSMKEAAEKP 695
>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella inopinata BO1]
gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella inopinata BO1]
Length = 714
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/710 (41%), Positives = 439/710 (61%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHI----EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + L V N L EA+ +A + +K + E G + E E E
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVE-----ETEMSAEQF 295
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ K ++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 296 ATIFK---HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQMIDALTGTYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++GL+
Sbjct: 413 IHPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAVLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKT 585
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F
Sbjct: 586 GAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 645 GPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase [Bradyrhizobium sp. ORS 278]
gi|187470941|sp|A4YJF3.1|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 278]
Length = 719
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/699 (42%), Positives = 434/699 (62%), Gaps = 19/699 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEK 119
E + G R + LETGKIAR A+GAVV ET VL+TV ++K D V DFLPLTVDYQEK
Sbjct: 8 EIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGV-DFLPLTVDYQEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E LV R+IDRPIRPLF + +E QV+ +VLS D + DP
Sbjct: 67 AYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMENDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A A SAAL LS +P+ GPIG R+G ++I+NPT+DE++ + L+LV A T +
Sbjct: 127 DIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK- 298
LM++ +A+E++E + + H + I LAEKA K ++ +++I +EK
Sbjct: 187 LMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPRD--VAIIDNSAIEKE 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV--DTVR 356
+ +AE + + K ER A+ + + V E E L A +
Sbjct: 245 MLGIAEQDLRKAYA--IAIKQERYAAVGAVKEKVMAYFFPEGQEPKYDKLRVAAVFKELE 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R I+ G R+DGR VR I CE G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 AKIVRWNILDTGKRIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGED 362
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q +++L G + F+LHY+FPP+ + E G+ G RRE+GHG LA +A+ VLPP ++F
Sbjct: 363 EQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEF 422
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT RV SEV S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 423 PYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEG-------SR 475
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L A +GR+ IL
Sbjct: 476 FAVLSDILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHIL 535
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGT 655
M + ++A R + +PR+ T K D +R +IG G + R+I E+TG ++++ DGT
Sbjct: 536 GEMSKALTAARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGT 595
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ V + + M+ ++ + I + EVG IY G V V E+GAFV F G + GL+H+S+
Sbjct: 596 VKVASSDGEAMKAAIKWIKS-IASDPEVGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQ 654
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+ + V + +DVV G ++ ++ +G D RG +LS+K V
Sbjct: 655 LADKRVQKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase [Brucella abortus bv. 1 str. 9-941]
gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
biovar Abortus 2308]
gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
23365]
gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
23445]
gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256370564|ref|YP_003108075.1| polynucleotide phosphorylase/polyadenylase [Brucella microti CCM
4915]
gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|340791750|ref|YP_004757215.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|376272110|ref|YP_005150688.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus
A13334]
gi|376275245|ref|YP_005115684.1| polynucleotide phosphorylase/polyadenylase [Brucella canis HSK
A52141]
gi|423167871|ref|ZP_17154574.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI435a]
gi|423169753|ref|ZP_17156428.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI474]
gi|423175257|ref|ZP_17161926.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI486]
gi|423177893|ref|ZP_17164538.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI488]
gi|423179186|ref|ZP_17165827.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI010]
gi|423182317|ref|ZP_17168954.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI016]
gi|423186741|ref|ZP_17173355.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI021]
gi|423190823|ref|ZP_17177431.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI259]
gi|75496015|sp|Q57A96.1|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123727384|sp|Q2YQR3.1|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037301|sp|A9M9Z8.1|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037302|sp|B0CK15.1|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702625|sp|B2S9G0.1|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
bv. 1 str. 9-941]
gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
domain, type 1 [Brucella melitensis biovar Abortus 2308]
gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
23365]
gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
23445]
gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
4915]
gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|340560209|gb|AEK55447.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|363399716|gb|AEW16686.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus
A13334]
gi|363403812|gb|AEW14107.1| polynucleotide phosphorylase/polyadenylase [Brucella canis HSK
A52141]
gi|374535701|gb|EHR07222.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI486]
gi|374539620|gb|EHR11123.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI435a]
gi|374543432|gb|EHR14915.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI474]
gi|374549095|gb|EHR20541.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI488]
gi|374552130|gb|EHR23559.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI016]
gi|374552502|gb|EHR23930.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI010]
gi|374554593|gb|EHR26004.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI259]
gi|374557453|gb|EHR28849.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI021]
Length = 714
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/710 (41%), Positives = 439/710 (61%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHI----EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + L V N L EA+ +A + +K + E G + E E E
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVE-----ETEMSAEQF 295
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ K ++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 296 ATIFK---HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++GL+
Sbjct: 413 IHPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAVLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKT 585
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F
Sbjct: 586 GAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 645 GPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|436841694|ref|YP_007326072.1| polynucleotide phosphorylase (PNPase) [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170600|emb|CCO23971.1| polynucleotide phosphorylase (PNPase) [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 742
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/695 (41%), Positives = 428/695 (61%), Gaps = 15/695 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+ I LETG++A NG+V + T V T S RDF PLT +Y EK +A
Sbjct: 13 QVGNLDIKLETGRMANQTNGSVWIQSGGTVVHVTAVSMATSEPRDFFPLTCNYLEKTYAA 72
Query: 124 GVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP Y RRE G P +RE LV R++DRPIRP+FP F EVQV+A+VLS+D +PD++
Sbjct: 73 GRIPGGYFRREVGRPSDRETLVSRLMDRPIRPMFPKAFCDEVQVIATVLSADTNTNPDVL 132
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNLVYACTREKTLM 241
A SAAL +SD+P+ GP+ R+G + +F++ PT +S SDLNL++A TR+ +M
Sbjct: 133 AMTGASAALHISDMPFNGPVAAARVGMVNNEFVLYPTYKGISEDSDLNLIFAATRDAVIM 192
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ ++ +SE + L H + + Q L EK G+ K E + E+ + V++
Sbjct: 193 VEGSSQFLSENTIAEALEFGHEQLGPMFDLQDALREKVGRPKVEVVEPVKDEEVITLVTD 252
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE--SLQVLPKAVDTVRKRV 359
A ++ T P K R A ++ + K +EE+ EE + + +A+ + K++
Sbjct: 253 TFAADLDKALTIPE--KMTRRAAKAEVKSNAVKLIEEKFPEEPKRAKAVGEAMAALEKKI 310
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+ EG+R+DGR L VR + E GNLP+ HGS+LF RG+T L TLG+ + QR
Sbjct: 311 VRDRIVNEGIRIDGRDLTTVRNLSMEVGNLPMTHGSALFRRGETSALAVCTLGSSRDEQR 370
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
E+L+G TKRFMLHY+FPP+C+ E +RRE+GHGTLAE+AL VLP FP+T
Sbjct: 371 FETLIGEGTKRFMLHYNFPPYCVGEARFLRAPSRREIGHGTLAERALRPVLPSPEKFPFT 430
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+RV SEVM S+GS+SMA+VCG +++LMDAG+P+ VAG+++GL E D + +
Sbjct: 431 MRVVSEVMDSNGSSSMASVCGTTLSLMDAGVPISAPVAGIAMGLCQEGD-------GFYV 483
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG ED LGDMDFK+AGT G+TAIQ+DIK +GIP +++ + L A + R ILD M
Sbjct: 484 LTDILGDEDALGDMDFKVAGTEEGITAIQMDIKISGIPAEVLRKALAQAKEARQLILDDM 543
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
++ I+ PR + N+P++ L + + +R LIGP G + I ET I + D G +++
Sbjct: 544 KQVIAEPRAELSVNAPQMEVLTINPEKIRDLIGPGGKNIKAITAETSADIDIEDSGKVSI 603
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A ++K +E V + + ++G Y G V + E GA VE G +GLLH+S++
Sbjct: 604 FAPTLESLKKTVEMVQY-YDQTADLGTNYVGTVKKILEIGAIVEILPGLEGLLHISQIDV 662
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
E + V+DVV +GQ+++++ + G I+LS KA
Sbjct: 663 ERIESVTDVVQLGQEITVKVVEVQPNGRIRLSRKA 697
>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
str. Paris]
gi|81369705|sp|Q5X1C7.1|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
Paris]
Length = 729
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/713 (41%), Positives = 441/713 (61%), Gaps = 17/713 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK--GDSVRDFLPLTVDYQE 118
+E G+ + LETG++AR A+GAV+ M+ T+VL TV K G+S DF PLTV+YQE
Sbjct: 6 KEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGES-NDFFPLTVNYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P + E L+ R+IDRPIRPLFP F++EVQ++A+VLS + +
Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A SAAL +S +P+ GPIG R+G G +++NP+ E S L+LV A T++
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H ++ LA + GK K E+K I +
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLKAR 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
++++A +EA + K +R + LD++ + AL E DE + V+ + +
Sbjct: 245 INDVARNEVEAAYL--IKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERS 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R RI+ R+DGR VRPI + L HGS LF+RG+TQ + TLG +AQ
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + G RFMLHY+FPP+ + E G+ RRE+GHG LA++AL+AVLP N+FPY
Sbjct: 363 ILDGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ E D Y
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDR-------YA 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK +GI +I+ LE A +GR IL
Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGV 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M ++ RT+ +++PR+ T+K D +R +IG GA + + E TG I + D G +
Sbjct: 536 MNNALAEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQ 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + ++ +E+ +++ +I EIEVG Y+G V+ + ++GAF+ G+ GLLH+S++
Sbjct: 596 LFSPDKMALEEAQKQIKALIA-EIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQIC 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSV 770
E +V +V+ GQ++ + G D +G +KL K +P+A+ K V SV
Sbjct: 655 AERTQKVEEVLQEGQEIEVFVAGIDKQGRVKLEWK---DKPQAEAKEVEGASV 704
>gi|386393055|ref|ZP_10077836.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. U5L]
gi|385733933|gb|EIG54131.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. U5L]
Length = 764
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/707 (42%), Positives = 436/707 (61%), Gaps = 15/707 (2%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPL 112
T + + E +G I LETG++A A+GAV + T VL T + + F PL
Sbjct: 2 TMSFDPIRLETTVGGNTIILETGRLANQADGAVWIQCGGTVVLVTACTQALAEEKGFFPL 61
Query: 113 TVDYQEKQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
VDYQE +A G IP +Y RRE G P ERE+LV R+IDRP RPLFP GF EVQ++A+VL
Sbjct: 62 VVDYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVL 121
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNL 230
S+DG+ +PD++A A S AL +S IP+ GPI R+G I GQF++NPT+ ++ + LNL
Sbjct: 122 SADGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNL 181
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
+A +R+ +M++ R +SE L L H + L+ Q + EKAGK K +
Sbjct: 182 TFAASRDAVVMVEGGGRFVSEDMLADALEWGHKAVLPLLDLQEEMREKAGKLKIAFTPPA 241
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKA-LEEECDEESLQVLP 349
+E+ V AEA ++ FT K R +A + Q V A LE D+ + ++
Sbjct: 242 PNEELEAVVRQAAEAGLKEAFT--IKDKMPRRDARRAVKQAVMAAVLEAFPDQPTYKMKA 299
Query: 350 -KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ ++ + K+++R I G+R+DGR VRPI + G LP HGS+LF+RG+T+ LC
Sbjct: 300 GEVLEAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCV 359
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG+ + Q++E+L G KRFMLHY+FPP+C+ EV G +RR++GHG LAE+++L
Sbjct: 360 ATLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLP 419
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLP +FP+T+RV S+VM S+GS+SMA+VCG S+ALMDAG+P+++ VAG+++GL+ E D
Sbjct: 420 VLPGPEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGD 479
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
D+ ILTDILG ED +GDMDFK+AGT G+T IQ+DIK GIP ++ + L A
Sbjct: 480 -------DFLILTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALGQA 532
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
+ RL IL M ++APR + +P+LA + + + +R +IGP G + I ETG
Sbjct: 533 KEARLHILGRMAEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGAS 592
Query: 649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + D G +++ A MEK +V++ + +VG YKG V + + G VE G
Sbjct: 593 IDIEDTGKISIFAPTLESMEKARARVEY-YDQHADVGANYKGKVKKIIDCGVIVEILPGL 651
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+GL+HVS+L E V DVV +GQ+L ++ + Q+ G I+LS KAV
Sbjct: 652 EGLVHVSQLDIERVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAV 698
>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase [Thermoanaerobacter tengcongensis MB4]
gi|81481549|sp|Q8RA43.1|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Thermoanaerobacter tengcongensis MB4]
Length = 707
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/700 (42%), Positives = 434/700 (62%), Gaps = 13/700 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQ 120
E E+ R + ++TGK+A+ ANGA + +T VL T +SK DF PLTV+Y+E+
Sbjct: 7 EMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERL 66
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
++ G IP +++REG P E+ +L R+IDRPIRPLFP G+ ++VQV+A+VLS D P+
Sbjct: 67 YSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQPE 126
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A +S AL +SDIP+ GP G + +G + G+F++NPT ++ S ++LV + T++ +
Sbjct: 127 IVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSGTKDAIV 186
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ A+E+ E+ + + AH + +E + ++ G K E L I ++ EKV
Sbjct: 187 MVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEIDKELEEKVR 246
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
A I P K ER + LDK+ Q+V + ++E + +L + + + + K +
Sbjct: 247 AYATEKIYNALRTPE--KKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIMKEQM 303
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
RK I E +RVDGR LD++RPI+CE G LP HGS++F+RG TQVL TLGA + Q L
Sbjct: 304 RKMIKEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQIL 363
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
E + KR+M HY+FPP+ + EV G RRE+GHG LAE+AL V+P E +FPYT+
Sbjct: 364 EGIGDEEFKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTI 423
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+ SEV++S+GSTS A+VCG ++ALMDAG+P++ VAG+++GL+ E D + IL
Sbjct: 424 RLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEED-------EVLIL 476
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDI G+ED LGDMDFK+AGT GVTAIQ+DIK GI DI+ LE A K RL +L M
Sbjct: 477 TDIQGIEDFLGDMDFKVAGTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKML 536
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
I PR + + +PR+ + + + +R +IGP G KI ETG +I + DG L +
Sbjct: 537 EVIKEPRKELSKYAPRVVRMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYIT 596
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A N E+ + ++ I ++IEVGGIY G V + +GAFVE G++GL+H+S LS +
Sbjct: 597 APNLEAGERAKQMIEAIT-KDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKK 655
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
V RV DVV VG + ++ D G I LS K P E
Sbjct: 656 RVRRVEDVVKVGDNILVKVTEIDKLGRIVLSRKDAMPDEE 695
>gi|424802140|ref|ZP_18227682.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
696]
gi|423237861|emb|CCK09552.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
696]
Length = 690
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/686 (42%), Positives = 433/686 (63%), Gaps = 25/686 (3%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV +K +DF PLT++YQE+ +A G IP + RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT DEL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ +E +V LAE+ + + TD
Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKALEEE------CDEESLQVLPKAVDTVRKRVIRKRIIAE 367
K ER +D I DV AL+ E DE L + A++ K V+R R++A
Sbjct: 242 ----KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIE---KNVVRSRVLAG 294
Query: 368 GVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPP 427
R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G
Sbjct: 295 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGER 354
Query: 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVM 487
T RF+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+
Sbjct: 355 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 414
Query: 488 ASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLE 547
S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E GE ++ +L+DILG E
Sbjct: 415 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE-----GE--NFVVLSDILGDE 467
Query: 548 DHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPR 607
DHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 468 DHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 527
Query: 608 TQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVM 666
+ +PR+ T+K D ++ +IG G++ R + EETG I + DGT+ + A +
Sbjct: 528 GDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 587
Query: 667 EKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSD 726
+ + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D
Sbjct: 588 KHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 646
Query: 727 VVSVGQQLSLRCIGQDVRGNIKLSLK 752
+ +GQ++ ++ + R LS+K
Sbjct: 647 YLQMGQEVPVKVERERERERESLSIK 672
>gi|395003996|ref|ZP_10388085.1| polyribonucleotide nucleotidyltransferase [Acidovorax sp. CF316]
gi|394318096|gb|EJE54566.1| polyribonucleotide nucleotidyltransferase [Acidovorax sp. CF316]
Length = 751
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/706 (39%), Positives = 440/706 (62%), Gaps = 12/706 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ + F+ G + + +ETG+IAR A+GAV++ +D+T VL+TV +SK +DF PLT
Sbjct: 3 IFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP ++ +RE P E E L R+IDRPIRPLFP GF++EV V+ +S
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTVSL 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + D DI A ATSAAL +S IP+ GPIG R+G I G++++NP S ++LV A
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFTGPIGAARVGYINGEYVLNPGQTARKSSQMDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+++SE+ + + H + + L AGK ++ E
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHDLVRDAGKPAWTWQAPAKDE 242
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ KV LA+ + A + +K R +A + V L+ E E + +
Sbjct: 243 ALIAKVGALADDKLAAAYQ--IRNKQSRTQACREAYAAVMAGLKAEGVEFDAVKVEGMLF 300
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ R++R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG
Sbjct: 301 DIEARLVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRAHGSALFTRGETQALVVTTLGT 360
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQR+++L G RFM+HY+ PPF EVG+ RRE+GHG LA++AL+AVLP +
Sbjct: 361 ERDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ + +
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKDAN----- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+
Sbjct: 476 --RFAVLTDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARI 533
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M+ + +T+ +P+L T+K + + +R +IG G++ R + EETG +I++
Sbjct: 534 HILGKMQEAMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGSVIRALTEETGCQINIEE 593
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+T+ A + + ++ +++ I E+E+G +Y+G VT + ++GA + G+ GLLH
Sbjct: 594 DGTITIAATDNAKADEAKRRIEQITA-EVEIGKVYEGPVTKILDFGALINLLPGKDGLLH 652
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+S+++HE V RV D ++ GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 653 ISQIAHERVERVGDYLTEGQIVKVKVMETDEKGRVKLSMKALADRP 698
>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
Length = 707
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 435/701 (62%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 10 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 70 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 130 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + ++K +E+ + KV
Sbjct: 190 VESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 249
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 250 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 308 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 368 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 600 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 699
>gi|410448394|ref|ZP_11302471.1| polyribonucleotide nucleotidyltransferase [Leptospira sp. Fiocruz
LV3954]
gi|418753270|ref|ZP_13309523.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. MOR084]
gi|421113968|ref|ZP_15574402.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. JET]
gi|422002420|ref|ZP_16349657.1| polynucleotide phosphorylase/polyadenylase [Leptospira santarosai
serovar Shermani str. LT 821]
gi|409966516|gb|EKO34360.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. MOR084]
gi|410017745|gb|EKO79800.1| polyribonucleotide nucleotidyltransferase [Leptospira sp. Fiocruz
LV3954]
gi|410800651|gb|EKS06835.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. JET]
gi|417258918|gb|EKT88303.1| polynucleotide phosphorylase/polyadenylase [Leptospira santarosai
serovar Shermani str. LT 821]
gi|456874363|gb|EMF89666.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. ST188]
Length = 698
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/692 (41%), Positives = 422/692 (60%), Gaps = 12/692 (1%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
+ G I LETG A+ A+GAVV +L+TV ++ +DF PLT +Y EK ++
Sbjct: 8 QYGRDTIVLETGSWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYTEKLYS 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G P Y +RE P E E+L+ RIIDRPIRPLFP G++ EVQ+ VLS+DG+
Sbjct: 68 VGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGEVSVAGH 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A NA SAAL +SDIP+ GPI RIGRI G+ I+NPT E++ SDL+LV A T+ +MI
Sbjct: 128 ALNAASAALTISDIPFNGPIAGARIGRINGELILNPTTKEIANSDLDLVVAGTKTHIVMI 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ +A+E+S +++ + LR A +++ Q +++ G K+E KL + + L KV
Sbjct: 188 EGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYSKRIGVVKREVKLKVRDSELLAKVKEY 247
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDTVRKRVIR 361
A A + A P K R + + I ++V + ++ +EE ++ + + + ++R
Sbjct: 248 AFAKLTAANQTPD--KTSRNKEISNINKEVVEFFKQTVEEEDKIKDIKTYLHELEYEIVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
++++ +G R DGR+LDE+RPI E LP HGSS+F+RG TQ L VTLG ++ QR E
Sbjct: 306 EQVLTKGTRFDGRKLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYE 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G K FMLHY+FP F + EV + G RRE+GHG LAE+AL VLP +FPY +R
Sbjct: 366 TLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFPYVIR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE++ S+GS+SMA+VC GS+ALM AG+P++ V+G+++GL S+ S+G+ Y +L+
Sbjct: 426 VVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSD---SSGK---YAVLS 479
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI GLEDH GDMD KIAGTR G+TA Q+D+K G+ D++ E A +GR ILD ME+
Sbjct: 480 DIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS +PR+ D + LIGP G R I E TG + + DG +T+
Sbjct: 540 HISKASDSLAGTAPRVIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGKVTISG 599
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ EK + VD E+EVG IY+G V + ++GAFVE G++GL H+S++ +
Sbjct: 600 SNQESAEKAAKMVDGFFA-EVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKR 658
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ V D+V G + ++ + D G I LS K
Sbjct: 659 VNSVKDIVKEGDVIRVKVLNVDKTGKIDLSRK 690
>gi|399020444|ref|ZP_10722574.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
CF444]
gi|398094859|gb|EJL85213.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
CF444]
Length = 712
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 288/699 (41%), Positives = 441/699 (63%), Gaps = 19/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG+IAR A+GAVV+ +++T VL+TV + K +DF PLTVDY EK +
Sbjct: 9 FQYGQHQVTLETGEIARQASGAVVVSIEDTVVLATVVARKDAKPGQDFFPLTVDYIEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E+E L R+IDRPIRPLFP G+ +EVQV+ VLS + + DPDI
Sbjct: 69 AAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIVHVLSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A +SAAL ++ IP+ GP+G R+G I GQ+I+NPT +L S L+LV A T LM
Sbjct: 129 AAMIGSSAALSIAGIPFNGPVGAARVGYIDGQYILNPTATQLKTSQLDLVVAGTETAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + + H ++ + L GK + ++ +E + +V+
Sbjct: 189 VESEAQQLSEEVMLGAVVFGHEQSKAVINAIHELVRDGGKPEVQWAPPAKNEPLIARVTE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA-----VDTVR 356
LA+ + + + K R E L + +V AL + A + +
Sbjct: 249 LADGKLREAYQ--TKDKQARTEKLKTVTSEVNAALAADAAAAGTSAADSAEVGGILFDLE 306
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG +
Sbjct: 307 AKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARD 366
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPEND 475
Q++++L+G + RFMLHY+ PPF E G RVG RRE+GHG LA++AL+A LPP +
Sbjct: 367 EQKIDALMGEYSDRFMLHYNMPPFATGETG-RVGTPKRREIGHGRLAKRALIAALPPAEE 425
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
F Y+VR+ SE+ S+GS+SMA+VCGG +ALMDAG+P+Q HVAG+++GL+ E +
Sbjct: 426 FSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGN------- 478
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A +GR+ I
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRVHI 538
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M+ + A + + +PRL T+K + + +R +IG GA+ R + EETG +I +SD G
Sbjct: 539 LGKMQEAVPAGKAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEG 598
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+T+ + + + ++ +++ + +EVG +Y+G V + ++GA V+ G+ GLLH+S
Sbjct: 599 VVTIASVDAAAGQEAKRRIEELTA-SVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLHIS 657
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
++++E V+ V+D + GQQ+ ++ + D RG +KLS+KA
Sbjct: 658 QIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKA 696
>gi|337286994|ref|YP_004626467.1| polyribonucleotide nucleotidyltransferase [Thermodesulfatator
indicus DSM 15286]
gi|335359822|gb|AEH45503.1| polyribonucleotide nucleotidyltransferase [Thermodesulfatator
indicus DSM 15286]
Length = 708
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/698 (42%), Positives = 432/698 (61%), Gaps = 15/698 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
K E E R +LETGK+A+ A+GA+ +T VL TV +S+ DFLPL+V+YQE
Sbjct: 3 KVEKEFAGRKFSLETGKVAKQAHGAIWATYGDTVVLVTVVASEEAKDVDFLPLSVEYQEM 62
Query: 120 QFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+A G IP +Y RRE G E+E++ R+IDRPIRPLFP G+ +E Q++A+VLS D + D
Sbjct: 63 YYAAGRIPGSYFRREVGKGSEKEIITARLIDRPIRPLFPKGWCYETQIIATVLSLDPEVD 122
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PD++A A SAAL +S IP+ GPI +R+GRI G+F+VNP L SD+NLV + E
Sbjct: 123 PDVVAITAASAALEVSHIPFEGPIAAVRVGRINGEFVVNPPASFLKQSDMNLVVVGSEEA 182
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A E+ E+ ++ + AH + L Q L EKAGK K ++ + E+ +K
Sbjct: 183 IVMVEGMANEVPEEIVQEAIFFAHEQIKPLLALQKELKEKAGKPKIAFEEPAVDEELKKK 242
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V LAE ++ V T + K R + ++ + V +AL EE +V + + K
Sbjct: 243 VRELAEEGLKEVIT--TAQKVARNKRRKEVFKKVLEALGEEAVGREAEVR-EYFEEFEKE 299
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R +I E R+DGR +++RPI+ E LP HGS +F+RG+TQVL TLG+P E Q
Sbjct: 300 LLRAMLIKENRRIDGRGPEDIRPIWAEVSVLPRTHGSVIFTRGETQVLTVATLGSPEEEQ 359
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
R++ K F+LHY+FPPFC+ EV G +RRE+GHG LAE+AL V+P E++FPY
Sbjct: 360 RIDMPGEEVFKHFILHYNFPPFCVGEVKPLRGPSRREIGHGMLAERALTPVVPSEDEFPY 419
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV S+V+ S+GS+SMATVCG +++LMDAG+P++ VAG+++GL+ E D
Sbjct: 420 TIRVVSDVLESNGSSSMATVCGATLSLMDAGVPIKAMVAGIAMGLIKEDDQVV------- 472
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
ILTDILG ED +GDMDFK+AGT GVTA+Q+DIK GI DI+ L A K R IL+
Sbjct: 473 ILTDILGDEDRMGDMDFKVAGTEKGVTALQMDIKITGITQDIMSRALAQAKKARFFILEK 532
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG-RISVSD--GT 655
M + PR + +P++ T+ + + +R LIGP G + I G +I V D G
Sbjct: 533 MREVLPEPREKLSAYAPKVLTVTINPEKVRDLIGPGGKTIKGIISACGDVKIDVDDKTGV 592
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + + + EK + V + +E EVG +Y G VT V ++GAFVE G +GL+H+S+
Sbjct: 593 VRIYSSSSEAAEKAAKMVKEVT-QEAEVGKLYLGKVTRVADFGAFVEIFPGTEGLVHISQ 651
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
L + V V+D++ G ++ ++ I D G IKLS KA
Sbjct: 652 LDNRRVKNVTDILKEGDEVLVKVIDIDKMGRIKLSRKA 689
>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
multiformis ATCC 25196]
gi|123740603|sp|Q2Y5X9.1|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
Length = 701
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/701 (42%), Positives = 437/701 (62%), Gaps = 15/701 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
K+ GS +T ETG+IAR A+ A+++ M +T VL TV +K +DF PLTVDYQ
Sbjct: 3 IKKSVTYGSHQLTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDYQ 62
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
E+ +A G IP ++ +REG P E+E+L R+IDRPIRPLFP FY+EVQV+A+VLSSD +
Sbjct: 63 ERSYAAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEV 122
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
D DI A SAAL+LS IP+ GPIG RIG I G++++NP L + LNLV A TR+
Sbjct: 123 DADIPAMLGASAALVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLNLVVAGTRQ 182
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ A E+SE + + H + ++ LA++AG +++
Sbjct: 183 AVLMVESDAMELSEDVMLGAIVYGHQQMQVAIDAINELADEAGVTAWDWEPPARDPALAV 242
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE-EECDEESLQVLPKAVDTVR 356
K++ LAE + A F K R E +D I V L E+ + Q + +A +
Sbjct: 243 KIAELAENDLRAAFRQKQ--KQVRSETIDNIWTRVFTELGVEDGEGPDAQAVKEACFALE 300
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
R++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG +
Sbjct: 301 SRIVRSQILDGEPRIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRD 360
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVLPPEND 475
Q++++L G ++RFMLHY+ PP+ E G RVG RRE+GHG LA++AL+AVLP +
Sbjct: 361 EQKIDALQGDYSERFMLHYNMPPYATGETG-RVGTPKRREIGHGRLAKRALVAVLPSPEE 419
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
F Y++RV SE+ S+GS+SMA+VCGG +ALMDAG+PL+ HVAG+++GL+ E +
Sbjct: 420 FGYSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGN------- 472
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A +GR+ I
Sbjct: 473 RFAVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEILHAALVQAREGRMHI 532
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG 654
L M + + A R ++PR+ ++ + + +R +IG GA+ R + EETG I ++ DG
Sbjct: 533 LAIMRQVLPARREDISEHAPRIIKIRINPEKIRDVIGKGGAVIRALTEETGTTIDITDDG 592
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + N E ++++ I E+EVG +Y G V + ++GA V G+ GLLH+S
Sbjct: 593 TVMIACVNAEGGELAKKRIEDITA-EVEVGRVYDGTVLKLLDFGAIVSVLPGKDGLLHIS 651
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
++++E V+ V D + GQ + ++ + D +G ++LS+KAV+
Sbjct: 652 QIANERVNNVGDHLKEGQVVRVKVLEADDKGRLRLSMKAVA 692
>gi|411001024|gb|AFV98755.1| polyribonucleotide nucleotidyltransferase [Candidatus Snodgrassella
sp. T3_2_35043]
Length = 707
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/697 (41%), Positives = 431/697 (61%), Gaps = 16/697 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A GAV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFY+++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+L+ +P+ GPIG R+G + G++++NPT +L+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLVVAGTEKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + +++ + E + KV
Sbjct: 189 VESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVADESLIAKVRE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
LA A I+ F K R LD+ V+ AL EE D + + K V+
Sbjct: 249 LAGATIDEAF--KIKQKQARTAKLDEAWSAVEAALITEETDTLLANQIRGIFKDLEKEVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L T TLG + Q +
Sbjct: 307 RGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VC G ++L++AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL IL M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQ 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ P+ + ++PRL T+K D +R +IG G R + ETG I+++ DGT+T+
Sbjct: 540 EAVKGPQ-ELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A E +++ I E+EVG +Y+G V + GA V G+ GL+H+S++S
Sbjct: 599 ASTSEAGEAAKRRIEEITA-EVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQIS 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+ V VSD + +GQQ+ ++ + D RG ++LS+KA+
Sbjct: 658 HDRVKNVSDYLQIGQQVKVKALEIDDRGRVRLSIKAL 694
>gi|421537710|ref|ZP_15983893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93003]
gi|402318377|gb|EJU53900.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93003]
Length = 706
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|410455997|ref|ZP_11309867.1| polynucleotide phosphorylase/polyadenylase [Bacillus bataviensis
LMG 21833]
gi|409928550|gb|EKN65654.1| polynucleotide phosphorylase/polyadenylase [Bacillus bataviensis
LMG 21833]
Length = 705
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/703 (40%), Positives = 445/703 (63%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K E+ + R +++E G++A+ A+GA ++ +T VLST T+SK DF PLT
Sbjct: 1 MEHTKHEYSMDWAGRKLSVEIGQLAKQASGAALVRYGDTAVLSTATASKEPKNLDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF ++VQV++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVISIVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D ++ A +S AL SDIP+ GPI + +GRI +F++NPT+++ SD++L A
Sbjct: 121 DQDCSTEMAAMFGSSLALSTSDIPFEGPIAGVVVGRINNEFVINPTVEQAEKSDIHLTVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + +E Q ++ + GK+K+E L I++
Sbjct: 181 GTKDAINMVEAGALEVPEEIMLEAIMFGHNEIKRLIEFQEKIVAEIGKEKREISLYEINK 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKI-GQDVKKALEEECDEESLQVLPKAV 352
+ +V L EA E + K R +A+ ++ Q V K +E+E +E ++ + + +
Sbjct: 241 ELEAEVRELCEA--EMLKAIQVQEKHAREDAIKEVKNQVVAKYVEQEATDEDMKQVKQIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
D + K +R+ I E VR DGR++DE+RP+ + LP HGS LF+RG TQ L TLG
Sbjct: 299 DKIVKGEVRRLITVEKVRPDGRKIDEIRPLSSQVSILPRTHGSGLFTRGQTQALSICTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L KRFM HY+FP F + E G G RRE+GHG L E+AL V+P
Sbjct: 359 AMGDVQILDGLGIEEEKRFMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALEPVIPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E DFPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV +G
Sbjct: 419 EKDFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLV-----KSG 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E Y +L+DI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A GR
Sbjct: 474 E--HYTVLSDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLSREILEEALQQAKVGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
+ ILD M I+ PR + + +P++ T+ + D +R +IGP G KI EETG +I +
Sbjct: 532 MHILDSMLATITEPREELSQFAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N+ + K + ++ I+ RE++VG +Y G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTVFIASTNQEMNNKAKKIIEDIV-REVQVGEMYLGKVKRIEKFGAFVEIFAGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V +V DVV +G ++ ++ D +G + LS KAV
Sbjct: 651 HISELAEERVGKVEDVVKIGDEMLVKVTEIDKQGRVNLSRKAV 693
>gi|418939579|ref|ZP_13492972.1| Polyribonucleotide nucleotidyltransferase [Rhizobium sp. PDO1-076]
gi|375053693|gb|EHS50095.1| Polyribonucleotide nucleotidyltransferase [Rhizobium sp. PDO1-076]
Length = 713
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/704 (41%), Positives = 443/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHSVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ A SAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ LM++ +A+E++E+ + + H ++ I+LAE A K+ ++++ SE
Sbjct: 181 GTQDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFQPEDHSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKA 351
E + + EA + + + K ER A+D + VK E E + +V+
Sbjct: 241 LEAEMLKHF-EAELRTAYKNTQ--KAERYAAVDAVKAKVKAHFFPEGVEPKYTAEVIGAT 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L VR I E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLSTVRAIVSEVGILPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E
Sbjct: 418 SPEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE----- 472
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ LE A G
Sbjct: 473 GE--RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALEQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M I+ R+Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RKHILGEMANAITEGRSQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E EVG +Y+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASASGKEIEAARKWIHSIVA-EPEVGVVYEGTVVKTADFGAFVNFFGSRDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ + V++ DVV GQ++ ++ +G D RG ++LS+KAV
Sbjct: 650 VHISQLASDRVAKTQDVVKEGQKVWVKLMGFDERGKVRLSMKAV 693
>gi|345864596|ref|ZP_08816795.1| polyribonucleotide nucleotidyltransferase [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124293|gb|EGW54174.1| polyribonucleotide nucleotidyltransferase [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 699
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 293/705 (41%), Positives = 442/705 (62%), Gaps = 16/705 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+ K+EF+ G ++LETG+IAR A+GAV++ MD+T VL+TV + RDF PLTVD
Sbjct: 1 MTAIKKEFQWGEHKVSLETGEIARQADGAVLVNMDDTVVLATVVGAGPIPGRDFFPLTVD 60
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
YQEK +A G IP + RREG P E+E+L R+IDRPIRPLFP G+ EVQV+ +V S +
Sbjct: 61 YQEKTYAAGKIPGGFFRREGRPSEKEILTSRLIDRPIRPLFPKGYNSEVQVILTVKSLNP 120
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNLVYAC 234
DP+I A SAAL +S +P+ GP+G R+G G++I+N LS SDL+L+ A
Sbjct: 121 AVDPEIPALIGASAALAISGLPFNGPVGACRVGYKDGEYILNAASTGLSADSDLDLIVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T E LM++ +A E+SE+ + + H ++ ++ LA + GK E++ + E
Sbjct: 181 TEEAVLMVESEANELSEEVMLGAVLFGHEQSQIVIDTINALAAEVGKAAGEFESPTVDEA 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQVLPK 350
V+ AE + ++ K ER A D + + + L E E S +
Sbjct: 241 LTAAVAEAAEVGMGDAYS--IADKLERYAAADAVKEATLEKLCSAAEGEEPRWSTDEVKG 298
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A++ ++KR++R RI+ R+DGR VRPI +G LP HGS+LF+RG+TQ L T
Sbjct: 299 ALEKLKKRIVRGRILDGEPRIDGRDTRTVRPISVRTGVLPRTHGSALFTRGETQALVVTT 358
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG ++Q +++L G + FMLHY+FPPFC+ E G+ RRE+GHG LA++ +LA +
Sbjct: 359 LGTERDSQIIDALEGERRESFMLHYNFPPFCVGETGRVGSPKRREIGHGRLAKRGVLACM 418
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +FPY +RV SE+ S+GS+SMA+VCG S++LMDAG+PL+ VAGV++GL+ E +
Sbjct: 419 PTLAEFPYAIRVVSEITESNGSSSMASVCGTSLSLMDAGVPLKAPVAGVAMGLIKEDE-- 476
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDI+G EDHLGDMDFK+AGT G+ A+Q+DIK GI +I+ LE A +
Sbjct: 477 -----RFAVLTDIMGDEDHLGDMDFKVAGTAQGINALQMDIKINGITKEIMEIALEQAKE 531
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL ILD M R IS+ R + ++PR+ +K + D +R +IG G R I E TG +
Sbjct: 532 GRLHILDEMNRVISSHRGEMSEHAPRIIEIKINPDKIRDVIGKGGVTIRGITEATGATVD 591
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ DG + + + +++ E+ ++V+ I ++EVG +Y+G V + ++GAFV G+ G
Sbjct: 592 ITDDGIVKIFSVDKAAGEEAKKRVELITA-DVEVGTVYEGKVARLMDFGAFVTILPGKDG 650
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S++S+E V +VSD +S G + ++ + D +G I+LS+KAV
Sbjct: 651 LVHISQISNERVEKVSDKLSEGDNIRVKVLEVDKQGRIRLSMKAV 695
>gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
DSM 12563]
gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
DSM 12563]
Length = 716
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/697 (41%), Positives = 446/697 (63%), Gaps = 18/697 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQEKQFAQG 124
G LI LETG +A+ A+G+V L + T +L+TV ++K ++ DF PLTV+Y EK +A G
Sbjct: 10 GEELI-LETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGG 68
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP + +RE P+++E+L+ RIIDRP+RPLFP GF +EVQ++ +VLS D D +A
Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALAL 128
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
A+SAAL +S IP+GGP+ +RIG G++I+NP EL S+L+++ A +++ LMI+
Sbjct: 129 IASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDIIVAGSKDAILMIEG 188
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAE 304
+A+E+SE+ + LAH E KY++ Q +A G QK E +L ++ V+
Sbjct: 189 EAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEYDADLVKTVTEYGR 248
Query: 305 AHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV-DTVRKRVIRKR 363
A IEA +P +K R E++D ++++ ++ D+E L K + T+ + ++R+
Sbjct: 249 AKIEAANYNPDKTK--RNESMDNAFNEIEEYIKTTTDDEKLISQVKGICHTIEEEIVREA 306
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
I+ + +R DGR LDE+RPI +P +HGS+LF+RG TQ L VTLG+ +AQ ++ +
Sbjct: 307 IVEKSMRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDI 366
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G K FMLHY+FPPF + EVG+ RRE+GHG LAE++ AVLP + FPYTVRV
Sbjct: 367 YGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKEKFPYTVRVV 426
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
+E++ S+GS+SMAT+C +M+L+ AG+PL VAG+++GL + D Y+ILTDI
Sbjct: 427 AEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKD-------GYKILTDI 479
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G+EDHLGDMDFK+AGTR G+TA QLDIK GI I+ E LE A K R ILD ++ I
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDIIDSTI 539
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
S D +P+ T++ + + +R LIGP G + I EETG + + D G + + A +
Sbjct: 540 SNAGEISDF-APKYKTMEVNPEKIRVLIGPGGKNIKSIIEETGSDVDIQDSGIVNIFAPD 598
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
++K ++ ++ + ++ E+G +Y GVV +K++GAF+E G +GL H+SEL+++ V
Sbjct: 599 TPTLDKTIKLINSYV-KDPEIGEVYDGVVKDIKDFGAFIEILPGVEGLCHISELAYKHVM 657
Query: 723 RVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSPRP 758
V +V+ +G ++ ++ I D++ G LS +A+ +P
Sbjct: 658 NVEEVLKIGDEVKVKII--DIKGGKYSLSRRALLEKP 692
>gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4]
gi|254782700|sp|B9JYL0.1|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4]
Length = 714
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/697 (41%), Positives = 436/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ A SAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E + + H ++ I+LAE A K+ +E++ S E +S
Sbjct: 188 MVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSALEAEMLS 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKAVDTVRKR 358
+AEA + + K +R A+D + VK E E +V+ ++ +
Sbjct: 248 -IAEAELRDAYK--ITQKADRYTAVDAVKAKVKAHFFPEGAEPKYTNEVIGAVFKHLQAK 304
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ R+DGR L+ VR I E G LP HGS+LF+RG+TQ + TLG + Q
Sbjct: 305 IVRWNILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQ 364
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP FPY
Sbjct: 365 YVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPY 424
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE +
Sbjct: 425 TLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE--RFA 477
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR IL
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGE 537
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I+ R+Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT+
Sbjct: 538 MANAITEGRSQLGEFAPRIEVMTIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIK 597
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + +E + + I+ E E+G +Y+G V ++GAFV F G + GL+H+S+L+
Sbjct: 598 IASASGKEIEAARKWIHSIVA-EPEIGVVYEGTVVKTADFGAFVNFFGSRDGLVHISQLA 656
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 657 VDRVAKTQDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778652|ref|YP_005187094.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|81376653|sp|Q5ZRV8.1|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|364509470|gb|AEW52994.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 729
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/712 (40%), Positives = 439/712 (61%), Gaps = 15/712 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEK 119
+E G+ + LETG++AR A+GAV+ M+ T+VL TV K G DF PLTV+YQEK
Sbjct: 6 KEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P + E L+ R+IDRPIRPLFP F++EVQ++A+VLS + + P
Sbjct: 66 FYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI+A SAAL +S +P+ GPIG R+G G +++NP+ E S L+LV A T++
Sbjct: 126 DIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDAI 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A+E+SE + + H ++ LA GK K E+K I ++
Sbjct: 186 LMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKARI 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+++A +EA + K +R + LD++ + AL E DE + V+ + + +
Sbjct: 246 NDVARNEVEAAYL--IKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RI+ R+DGR VRPI + L HGS LF+RG+TQ + TLG +AQ
Sbjct: 304 VRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ + G RFMLHY+FPP+ + E G+ RRE+GHG LA++AL+AVLP N+FPY
Sbjct: 364 LDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ E D Y +
Sbjct: 424 LRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDR-------YAV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK +GI +I+ + LE A +GR IL M
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTV 658
++ RT+ +++PR+ T+K D +R +IG GA + + E TG I + D G + +
Sbjct: 537 NNALAEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVVQL 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ ++ +E+ +++ +I EIEVG Y+G V+ + ++GAF+ G+ GLLH+S++
Sbjct: 597 FSPDKMALEEAQKQIKALIA-EIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICA 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSV 770
+ +V +V+ GQ++ + G D +G +KL K +P+A+ K V + V
Sbjct: 656 DRTQKVEEVLQEGQEIEVFVAGIDKQGRVKLEWK---DKPQAEAKEVEDAPV 704
>gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum So
ce56]
gi|187611292|sp|A9F8Z2.1|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum So ce56]
Length = 757
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/713 (40%), Positives = 431/713 (60%), Gaps = 27/713 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEK 119
+E +G R +TLETG++A+ A+GAV++ +T VL T S DF PLT ++ EK
Sbjct: 4 RESVMVGGRALTLETGRLAKQAHGAVLVTYGDTMVLVTAVSQDERPGLDFFPLTCEFVEK 63
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +RE +E E+L R++DRP+RPLFP GF + Q++A+VLSSD +
Sbjct: 64 TYAAGKIPGGFFKREARQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKA 123
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL +SDIPW GP+ +R+GR+ G+F+ PT+ ++ D++LV AC+R+
Sbjct: 124 DVLALTGASAALHISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDIDLVVACSRDAI 183
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEK----AGKQKKEYKLSMISEQT 295
+M++ A E +E ++ L AH A +P I L EK GK K+E+ + ++
Sbjct: 184 VMVEGGAAEATEAEIIDALMFAHETA----QPVIDLIEKMRAAVGKPKREFVAPALPDEI 239
Query: 296 LEKVSNLAEAHIEAV--FTDPSYSKFERGEALDKIGQDVKKALEEECDEES---LQVLPK 350
+V+ + + ++A TD K R + + + + + L E E LQ L K
Sbjct: 240 KRRVAQIVDEDLKAATKVTD----KKARYDGYSSLKKKLTETLSAELGAEKLLPLQGLVK 295
Query: 351 AVDTVRK-RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
A RK V+R + EG R+DGR +RPI CE G LP +HGS+LF RG+TQ + T
Sbjct: 296 AEFEERKAHVVRTYVTEEGRRIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTT 355
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q+++ L+G KRF LHY+FPPF E G RRE+GHG LAE+AL +
Sbjct: 356 TLGTSTDEQKIDGLMGETWKRFYLHYNFPPFSTGETKPLRGPGRREIGHGALAERALSRM 415
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P + FPYT+R+ SE + S+GS+SMA VCGG ++LMDAG+P++ VAG+++GL+ E +
Sbjct: 416 IPAPDQFPYTIRIVSETLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGN- 474
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
Y +L+DILG EDHLGDMDFK+ GT GVTAIQ+DIK AG+ I+ + L+ A
Sbjct: 475 ------KYAVLSDILGDEDHLGDMDFKVCGTARGVTAIQMDIKIAGLSRQILAQALDQAR 528
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+GRL IL M + R + + +PR+ T++ D +R +IGP G + I ++TG I
Sbjct: 529 EGRLHILGKMLETLPTTRPELSQYAPRITTVRVKPDQIRLIIGPGGKTIKGIVDQTGVAI 588
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
V DGT+ V + + +++ L+ + + E EVG YKG V + ++GAFVE
Sbjct: 589 DVEDDGTVNVASADSDAVKRALDIIKGLTA-EPEVGATYKGTVKRITDFGAFVEILPNTD 647
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761
GLLH+SE++H V RV DVV G L ++ + D G I+LS + + P PE +
Sbjct: 648 GLLHISEMAHTRVERVEDVVKEGDSLDVKVLSVDREGKIRLSRRELLPLPEGE 700
>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
Length = 709
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/717 (40%), Positives = 438/717 (61%), Gaps = 21/717 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + + A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + +I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHEISAEVSAALLAENEALDAKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVDEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K D ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQA 776
V +VSD ++ GQ++ ++ + D +G ++LS+K P VE + V QA
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETP-------VEAAAEVAPQA 708
>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
Length = 716
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 21/703 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ + G +TLETGK+AR A+G+V+ + ET V++ VT +K +DF PLTV YQE
Sbjct: 6 KKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G +P + +RE P E+E L R+IDRPIRPLF GF HEV VM +VLS D D
Sbjct: 66 KYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS------LSDLNLVY 232
PDI+A A SAAL +S +P+ GPI R+G G++++NPT+D++ L+LV
Sbjct: 126 PDIVAMIAASAALTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQRLDLVV 185
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T++ +M++ +A E++E ++ + AH + ++ I LAE+A K+ +++ S
Sbjct: 186 AGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQAPDYS 245
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
E E V E + A + K ER A+ + +++K L EE E++ L A+
Sbjct: 246 E-LFEVVKGFGEEKMRAAYA--ISDKQERVAAVSAVKEEIKGQLSEEQLEDA--NLGSAL 300
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ V+R ++ R+DGR LD+VRPI E+ LP HGSSLF+RG+TQ L TLG
Sbjct: 301 KKLESNVLRADVVKNKRRIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLG 360
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G F+LHY+FPP+ + EVG+ RRE+GHG LA +AL AVLP
Sbjct: 361 TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA 420
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
DFPYT+RV SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GLV E G
Sbjct: 421 PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLE---DGG 477
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
E Y +LTDILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L A GR
Sbjct: 478 E---YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKAGR 534
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
L IL M + ++ + ++PR+ T++ D +R +IG G + R+I E +G ++ ++
Sbjct: 535 LHILAEMAKALTEA-GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DG + + + N ++K + + I+ E E G +YKG V + ++GAFV F G + GL+
Sbjct: 594 DDGVIKIASANGEAIQKAYDMIYSIVA-EPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLV 652
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++ + ++ SDV+ GQ++ ++ +G D RG ++L++K V
Sbjct: 653 HVSQIENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMV 695
>gi|340354948|ref|ZP_08677644.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
gi|339622962|gb|EGQ27473.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
Length = 707
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/690 (41%), Positives = 440/690 (63%), Gaps = 14/690 (2%)
Query: 68 RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIP 127
R +T+E G++A+ ANGAV++ +T VLSTVT+SK DF PLTV+Y+E+ +A G IP
Sbjct: 15 RPLTIEAGQLAKQANGAVLVRYGDTTVLSTVTASKKPKPLDFFPLTVNYEERLYAVGKIP 74
Query: 128 NTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANAT 187
+++REG P E+ +L R+IDRPIRPLFP GF ++VQV++ V+S D +I A +
Sbjct: 75 GGFIKREGRPSEKAVLTSRLIDRPIRPLFPDGFRNDVQVISLVMSVDQNCSSEIAAMIGS 134
Query: 188 SAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR 247
S AL +SDIP+ GPI +++GRI G+FIVNPT ++L S+++LV A T++ M++ A+
Sbjct: 135 SLALSISDIPFDGPIAGVQVGRIDGEFIVNPTPEQLETSEIDLVVAGTKDAINMVEAGAK 194
Query: 248 EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAH- 306
E+SE+ + + H E K + Q ++A++ GK+K E +L + + +V N E
Sbjct: 195 EVSEEIMLEAIMFGHDEIKKLIAFQEKIAQEIGKEKFEIELFELDPEISAEVKNFCENDL 254
Query: 307 IEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAVDTVRKRVIRKRII 365
I A+ T+ ++ R EA++++ V + + E DE++++ + ++ + K +R+ I
Sbjct: 255 ISAIQTEEKHA---REEAINEVKTAVLDRYIANEADEDTMKQVKAVLEQMVKDEVRRLIT 311
Query: 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVG 425
+ VR DGR LDE+RP+ E+G L HGSSLF+RG TQVL TLGA E Q ++ L
Sbjct: 312 VDKVRPDGRALDEIRPLSSETGLLQRAHGSSLFTRGQTQVLSVCTLGALGEVQIIDGLGL 371
Query: 426 PPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSE 485
+KRFM HY+FP F + E G G RRE+GHG L E+ALL VLP E++FPYT+R+ +E
Sbjct: 372 DESKRFMHHYNFPNFSVGETGPIRGPGRREIGHGALGERALLPVLPNEDEFPYTMRLVAE 431
Query: 486 VMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILG 545
V+ S+GS+S A++C +MA+MDAG+P++ VAG+++GL+ + + DY ILTDI G
Sbjct: 432 VLESNGSSSQASICASTMAMMDAGVPIKSPVAGIAMGLIKKEE-------DYSILTDIQG 484
Query: 546 LEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISA 605
+EDHLGDMDFK+AGT G+TA+Q+DIK G+ I+ E L A GR++IL+HM IS
Sbjct: 485 MEDHLGDMDFKVAGTEKGITALQMDIKIDGLSRQILEESLAQAKIGRIKILEHMMTTIST 544
Query: 606 PRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRS 664
R + +P++ + + D +R +IGP G + KI EET +I DGT+ + + N
Sbjct: 545 TREELSEYAPKIVVIHINPDKIRDVIGPGGKVINKIIEETQVKIDTEQDGTIYIASPNSE 604
Query: 665 VMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV 724
+ K + ++ I+ RE + G Y V ++++GAF+E G+ GLLH+SE+ V
Sbjct: 605 MNAKAKKMIEDIV-REAKAGEYYLAKVKRIEKFGAFLEIFPGKDGLLHISEIQEGRTKAV 663
Query: 725 SDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
D + +G +L ++ I D +G + LS K V
Sbjct: 664 EDELKLGDELFVKVIEIDKQGRVNLSRKVV 693
>gi|359685395|ref|ZP_09255396.1| polynucleotide phosphorylase/polyadenylase [Leptospira santarosai
str. 2000030832]
Length = 698
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/692 (41%), Positives = 422/692 (60%), Gaps = 12/692 (1%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
+ G I LETG A+ A+GAVV +L+TV ++ +DF PLT +Y EK ++
Sbjct: 8 QYGRDTIVLETGSWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYTEKLYS 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G P Y +RE P E E+L+ RIIDRPIRPLFP G++ EVQ+ VLS+DG+
Sbjct: 68 VGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGEVSVAGH 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A NA SAAL +SDIP+ GPI RIGRI G+ I+NPT E++ SDL+LV A T+ +MI
Sbjct: 128 ALNAASAALTISDIPFNGPIAGARIGRINGELILNPTTKEIANSDLDLVVAGTKTHIVMI 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ +A+E+S +++ + LR A +++ Q +++ G K+E KL + + L KV
Sbjct: 188 EGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYSKQIGVVKREVKLKVRDSELLAKVKEY 247
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDTVRKRVIR 361
A A + A P K R + + I ++V + ++ +EE ++ + + + ++R
Sbjct: 248 AFAKLTAANQTPD--KTSRNKEISNINKEVVEFFKQTVEEEDKIKDIKTYLHELEYEIVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
++++ +G R DGR+LDE+RPI E LP HGSS+F+RG TQ L VTLG ++ QR E
Sbjct: 306 EQVLTKGTRFDGRKLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYE 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G K FMLHY+FP F + EV + G RRE+GHG LAE+AL VLP +FPY +R
Sbjct: 366 TLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFPYVIR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE++ S+GS+SMA+VC GS+ALM AG+P++ V+G+++GL S+ S+G+ Y +L+
Sbjct: 426 VVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSD---SSGK---YAVLS 479
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI GLEDH GDMD KIAGTR G+TA Q+D+K G+ D++ E A +GR ILD ME+
Sbjct: 480 DIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS +PR+ D + LIGP G R I E TG + + DG +T+
Sbjct: 540 HISKASDSLAGTAPRVIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGKVTISG 599
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ EK + VD E+EVG IY+G V + ++GAFVE G++GL H+S++ +
Sbjct: 600 SNQESAEKAAKMVDGFFA-EVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKR 658
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ V D+V G + ++ + D G I LS K
Sbjct: 659 VNSVKDIVKEGDVIRVKVLNVDKTGKIDLSRK 690
>gi|357632296|ref|ZP_09130174.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
FW1012B]
gi|357580850|gb|EHJ46183.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
FW1012B]
Length = 762
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/707 (42%), Positives = 433/707 (61%), Gaps = 15/707 (2%)
Query: 53 TKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPL 112
T + + E +G I LETG++A A+GAV + T VL T + + F PL
Sbjct: 2 TMSFDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTACTQALAEEKGFFPL 61
Query: 113 TVDYQEKQFAQGVIPNTYMRRE-GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVL 171
VDYQE +A G IP +Y RRE G P ERE+LV R+IDRP RPLFP GF EVQ++A+VL
Sbjct: 62 VVDYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVL 121
Query: 172 SSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSL-SDLNL 230
S+DG+ +PD++A A S AL +S IP+ GPI R+G I GQF++NPT+ ++ + LNL
Sbjct: 122 SADGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNL 181
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
+A +R+ +M++ R +SE L L H L+ Q + EKAGK K +
Sbjct: 182 TFAASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPA 241
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP- 349
+E+ V AEA ++ FT K R +A + Q V A+ E ++ +
Sbjct: 242 PNEELEAVVRQAAEAGLKEAFT--IKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKA 299
Query: 350 -KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ ++ + K+++R I G+R+DGR VRPI + G LP HGS+LF+RG+T+ LC
Sbjct: 300 GEVLEAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCV 359
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG+ + Q++E+L G KRFMLHY+FPP+C+ EV G +RR++GHG LAE+++L
Sbjct: 360 ATLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLP 419
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLP +FP+T+RV S+VM S+GS+SMA+VCG S+ALMDAG+P+++ VAG+++GL+ E D
Sbjct: 420 VLPGPEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGD 479
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
D+ ILTDILG ED +GDMDFK+AGT G+T IQ+DIK GIP ++ + L A
Sbjct: 480 -------DFLILTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQA 532
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
+ RL IL M ++APR + +P+LA + + + +R +IGP G + I ETG
Sbjct: 533 KEARLHILGRMAEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGAS 592
Query: 649 ISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + D G +++ A MEK +V++ + +VG YKG V + + G VE G
Sbjct: 593 IDIEDTGKISIFAPTLESMEKARARVEY-YDQHADVGANYKGKVKKIIDCGVIVEILPGL 651
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+GL+HVS+L E V DVV +GQ+L ++ + Q+ G I+LS KAV
Sbjct: 652 EGLVHVSQLDIERVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAV 698
>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
Length = 706
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K ER LD+ VK+AL EE D + + + V+
Sbjct: 249 VAGETIKEAF--KIRQKQERSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++ LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
Length = 713
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/711 (40%), Positives = 434/711 (61%), Gaps = 16/711 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG IAR A AV++ MD+T V +V K ++V +DF PLTV+YQE+
Sbjct: 10 FQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKK-EAVEGQDFFPLTVNYQERT 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + PD
Sbjct: 69 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPNVQPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++ TSAAL +S IP+ GPIG R+G I GQ ++NP+ EL S L+LV A T L
Sbjct: 129 MVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLDLVVAGTEGAVL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+++ + + H + ++ A + ++ + +++
Sbjct: 189 MVESEADNLTEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPAWDWVAPEENTALNNRIA 248
Query: 301 NLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA +EA ++++R + I +V + L E E + + + + K V
Sbjct: 249 ELAEAKLVEAYQITEKMARYDR---IHAIAAEVNEVLLAEDPEANTKEIHTIFHDLEKTV 305
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ IIA R+DGR+ D VR + +G LP HGSSLF+RG+TQ + T TLG +AQ
Sbjct: 306 VRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQI 365
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYT
Sbjct: 366 IDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPYT 425
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +
Sbjct: 426 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGD-------DFVV 478
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
+ IS R + +PR+ T+K D ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 539 DEAISGAREEISEFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKI 598
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++H
Sbjct: 599 AATDGDQAKDAIARIEAITA-EVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIAH 657
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGS 769
E V +V+D + GQ++ ++ + D +G ++LS+K +PEA E S
Sbjct: 658 ERVEKVTDYLKEGQEVQVKVLEIDRQGRVRLSMKEAMEKPEAKAPAADENS 708
>gi|418743949|ref|ZP_13300308.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. CBC379]
gi|410795344|gb|EKR93241.1| polyribonucleotide nucleotidyltransferase [Leptospira santarosai
str. CBC379]
Length = 698
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/692 (41%), Positives = 421/692 (60%), Gaps = 12/692 (1%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
+ G I LETG A+ A+GAVV +L+TV ++ +DF PLT +Y EK ++
Sbjct: 8 QYGRDTIVLETGSWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYTEKLYS 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G P Y +RE P E E+L+ RIIDRPIRPLFP G++ EVQ+ VLS+DG+
Sbjct: 68 VGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGEVSVAGH 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A NA SAAL +SDIP+ GPI RIGRI G+ I+NPT E++ SDL+LV A T+ +MI
Sbjct: 128 ALNAASAALTISDIPFNGPIAGARIGRINGELILNPTTKEIANSDLDLVVAGTKTHIVMI 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ +A+E+S +++ + LR A +++ Q +++ G K+E KL + L KV
Sbjct: 188 EGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYSKRIGVVKREVKLKVRDSDLLAKVKEY 247
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE-SLQVLPKAVDTVRKRVIR 361
A A + A P K R + + I ++V + ++ +EE ++ + + + ++R
Sbjct: 248 AFAKLTAANQTPD--KTSRNKEISNINKEVVEFFKQTVEEEDKIKDIKTYLHELEYEIVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
++++ +G R DGR+LDE+RPI E LP HGSS+F+RG TQ L VTLG ++ QR E
Sbjct: 306 EQVLTKGTRFDGRKLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYE 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G K FMLHY+FP F + EV + G RRE+GHG LAE+AL VLP +FPY +R
Sbjct: 366 TLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFPYVIR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE++ S+GS+SMA+VC GS+ALM AG+P++ V+G+++GL S+ S+G+ Y +L+
Sbjct: 426 VVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSD---SSGK---YAVLS 479
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI GLEDH GDMD KIAGTR G+TA Q+D+K G+ D++ E A +GR ILD ME+
Sbjct: 480 DIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS +PR+ D + LIGP G R I E TG + + DG +T+
Sbjct: 540 HISKASDSLAGTAPRVIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGKVTISG 599
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ EK + VD E+EVG IY+G V + ++GAFVE G++GL H+S++ +
Sbjct: 600 SNQESAEKAAKMVDGFFA-EVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKR 658
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ V D+V G + ++ + D G I LS K
Sbjct: 659 VNSVKDIVKEGDVIRVKVLNVDKTGKIDLSRK 690
>gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
Length = 714
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/710 (41%), Positives = 439/710 (61%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHI----EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + L V N L EA+ +A + +K + E G + E E E
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVE-----ETEMSAEQF 295
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ K ++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 296 ATIFK---HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++GL+
Sbjct: 413 IHPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAVLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKT 585
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F
Sbjct: 586 GAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 645 GPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|374335287|ref|YP_005091974.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
gi|372984974|gb|AEY01224.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
Length = 715
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/694 (41%), Positives = 431/694 (62%), Gaps = 16/694 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVL-STVTSSKGDSVRDFLPLTVDYQEKQF 121
F+ G +TLETG IAR A AV+ +D+T VL S V + D RDF PLTV+YQE+ +
Sbjct: 8 FQYGQHTVTLETGVIARQATAAVMASIDDTSVLVSVVGKREADESRDFFPLTVNYQERTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S++ + PDI
Sbjct: 68 AAGRIPGSFFKREGRPTEGETLTARLIDRPIRPLFPDGFKNEVQVIATVMSANPEIAPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GPIG R+G + G++++NP++ EL S L+LV A T LM
Sbjct: 128 ISMLGTSAALAISGIPFAGPIGAARVGYMNGEYVLNPSISELKDSQLDLVVAGTAGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + + H + + A + G Q +++ +E KV+
Sbjct: 188 VESEASVLPEEVMLGAVMYGHEQLQTAVNAINEFAAEVGTQPWDWQPKAENEALKAKVAE 247
Query: 302 LAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LA A + + TD K R +A+ I V+ A+ E+ E ++ + + + + K +
Sbjct: 248 LASAELGEAYRITD----KTARRDAISDIKAKVQAAVLEQSPEAEIKEIQELLGKLEKTI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRGRVVRGEPRIDGREPDMIRALNVATGLLPRAHGSALFTRGETQALVAATLGTERDAQL 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P + +FPYT
Sbjct: 364 IDELTGERANRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVAAVMPSQEEFPYT 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEAE-------GFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L+ A RL IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTSEGVTALQMDIKIEGITKEIMEVALKQARNARLHILKVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
+ + APR +PR+ T+K + + +R +IG GA R + EETG I + DGT+ +
Sbjct: 537 DEALQAPRADISDFAPRIHTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + +++ + E+E G IY+G V + ++GAFV G+ GL+H+S+++
Sbjct: 597 AAVDGEAAKLAIRRIEQLTA-EVESGTIYEGQVVRLADFGAFVNILPGKDGLVHISQITE 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V VSD + VG + ++ + D +G I+LS+K
Sbjct: 656 ERVKNVSDHLKVGDTVKVKVLEVDRQGRIRLSIK 689
>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 687
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/680 (41%), Positives = 431/680 (63%), Gaps = 16/680 (2%)
Query: 77 IARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135
+AR A AV++ MD+T V TV K +DF PLTV+YQE+ +A G IP + RREG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61
Query: 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD 195
P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS
Sbjct: 62 RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 196 IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLE 255
IP+ GPIG R+G I Q+++NPT +EL S L+LV A T LM++ +A +SE +
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 256 AGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TD 313
+ H + ++ L ++AGK + +++ ++E +V+ LAE+ + + TD
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITD 241
Query: 314 PSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDG 373
K ER +D I + L E + L + + + K V+R R++A R+DG
Sbjct: 242 ----KQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDG 297
Query: 374 RQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFML 433
R+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G T F+
Sbjct: 298 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTDSFLF 357
Query: 434 HYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGST 493
HY+FPP+ + E G RRE+GHG LA++ +LAV+P +FPYTVRV SE+ S+GS+
Sbjct: 358 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSS 417
Query: 494 SMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDM 553
SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+DILG EDHLGDM
Sbjct: 418 SMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGD-------NFVVLSDILGDEDHLGDM 470
Query: 554 DFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRN 613
DFK+AG+R G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR
Sbjct: 471 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNLAKGARLHILGVMEQAINAPRGDISEF 530
Query: 614 SPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEK 672
+PR+ T+K + D ++ +IG G++ R + EETG I + DGT+ + A + + + +
Sbjct: 531 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRR 590
Query: 673 VDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQ 732
++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +GQ
Sbjct: 591 IEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 649
Query: 733 QLSLRCIGQDVRGNIKLSLK 752
++ ++ + D +G ++LS+K
Sbjct: 650 EVPVKVLEVDRQGRVRLSIK 669
>gi|384482469|pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
gi|384482470|pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
gi|384482471|pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 436/703 (62%), Gaps = 22/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + + LETG+IAR A+GAV+ M ET VL+T +K +DF PLTV+YQE
Sbjct: 11 RKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQE 70
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL D + D
Sbjct: 71 KTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLEND 130
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ A SAAL LS P+ GPIG R+G + G +++NPT+DE+ S ++LV A T +
Sbjct: 131 PDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA 190
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E+SE+ + G+ AH + ++ I LAE A K+ ++ ++ K
Sbjct: 191 VMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPED-TDAIKAK 249
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+ +L A I A + K +R EA+ + AL DE P + + K
Sbjct: 250 MKDLVGADIAAAYK--IQKKQDRYEAVGAAKKKAIAALGL-SDENPTGYDPLKLGAIFKE 306
Query: 359 ----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V+R+ I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 307 LEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTG 366
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +AL +LP +
Sbjct: 367 DDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKE 426
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E D
Sbjct: 427 DFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQD------ 480
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A +GR
Sbjct: 481 -GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAH 539
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M + + APR +P++ T+ D +R +IG G + R+I TG ++ ++ D
Sbjct: 540 ILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD 599
Query: 654 GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
G + V A + + K+ +D+I I E EVG IY G V V ++GAFV F G + GL+
Sbjct: 600 GVVKVSASDGA---KIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLV 656
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 657 HVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVV 699
>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
Length = 697
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/702 (39%), Positives = 443/702 (63%), Gaps = 23/702 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQ 120
+F+ G I L+TG IAR AN +V++ MD+T VL TV S + +DF PL V+YQE+
Sbjct: 8 KFQYGKHTIILDTGTIARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLVVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G P + RREG P E E+L R+IDRPIRPLFP GFY++VQ++A+V+S + + PD
Sbjct: 68 YAAGKFPGGFFRREGRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSVNPQISPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LSDIP+ GPIG+ R+G I Q+++NPT+ EL+ S L+LV + T L
Sbjct: 128 IVAIIGASAALSLSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVISGTESNIL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ ++ +SEK++ + H + + +L ++ GK K +K + + +S
Sbjct: 188 MVESESSLLSEKEILNAIIFGHEQQQIVIHNINKLVQEIGKSKFIWKRKELDLSLQKYLS 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEA--LDKIGQDVKKALEEECDEESLQV----LPKAVDT 354
+L E+ + + S + +G L+ I QDV ++ C + S + + ++
Sbjct: 248 DLYESRLNCI----SIVRDRKGRQIQLNNIKQDV---IDFSCIKYSNTMNGNEIMYFLNY 300
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ +++R+ I+ +R+DGR D +R I + G LP HGS+LF+RG+TQ L VTLG
Sbjct: 301 LEVQLLRQYILKNNLRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTE 360
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
AQ L+ L G RF++HY+F P+C+ E+G RRE+GHG LA++ +LAV+P N
Sbjct: 361 RNAQNLDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSN 420
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+RV SE+ S+GS+SMA++CG S+ALMDAG+P++E VAGV++GL+ E +
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEEN------ 474
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
++ +L+DI+ EDH+GDMDFK+AG + G+TA+Q+DIK GI +II LE + RL+
Sbjct: 475 -EFVVLSDIISDEDHIGDMDFKVAGGKQGITALQMDIKINGITYEIIHVALEKSKLARLK 533
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SD 653
IL+ ME+ I PR +PR+ +K + D ++ +IG G++ R + EET I + D
Sbjct: 534 ILNFMEQVIKIPRKNISEFAPRIYNIKINPDKIKDVIGKGGSVIRALTEETNTIIDIEDD 593
Query: 654 GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHV 713
G + +V+ N ++ + ++ I I +G +Y G VT + E+GAF+ G++GLLH+
Sbjct: 594 GLIKIVSLNAEKAKQAMSRIQEITA-NIAIGSVYTGKVTHIVEFGAFITIFSGKEGLLHI 652
Query: 714 SELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
S++S + + +VSD + +GQ++ ++ + D +G I+LS++ ++
Sbjct: 653 SQISEKRIGKVSDYLKLGQEVLVKVLDIDRQGRIRLSMRGIN 694
>gi|375130052|ref|YP_004992151.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
Length = 711
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/704 (41%), Positives = 438/704 (62%), Gaps = 24/704 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG +AR A AV++ MD+T V +V K ++V +DF PLTV+YQE+
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKK-EAVEGQDFFPLTVNYQERT 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + PD
Sbjct: 69 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+ TSAAL +S IP+ GPIG R+G I GQ ++NP+ EL+ S L+LV A T L
Sbjct: 129 IVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVVAGTESAVL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+++ + + H + ++ A + ++ + K++
Sbjct: 189 MVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEENTALTAKIA 248
Query: 301 NLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV---- 355
LAEA +EA ++++R + +I +V L E +E + PK + T+
Sbjct: 249 ELAEAKLVEAYQITEKMARYDR---IHEISAEVSATLLAENEELN----PKEIHTIFHDL 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K V+R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 302 EKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQR 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+AQ ++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++
Sbjct: 362 DAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E +
Sbjct: 422 FPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN------- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL I
Sbjct: 475 DFVVLSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
L M++ IS R + +PR+ T+K D ++ +IG GA+ R++ EETG I + DG
Sbjct: 535 LSVMDQAISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + A + + + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S
Sbjct: 595 TIKIAATSGEQAQDAIRRIEQITA-EVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+++ + + +VSDV+S GQ++ ++ + D +G ++LS+K +P
Sbjct: 654 QIADKRIEKVSDVLSEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 697
>gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase [Caulobacter crescentus CB15]
gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
NA1000]
gi|81536356|sp|Q9AC32.1|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782712|sp|B8GWZ0.1|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus
CB15]
gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide
adenylyltransferase [Caulobacter crescentus NA1000]
Length = 712
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 436/703 (62%), Gaps = 22/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + + LETG+IAR A+GAV+ M ET VL+T +K +DF PLTV+YQE
Sbjct: 6 RKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL D + D
Sbjct: 66 KTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ A SAAL LS P+ GPIG R+G + G +++NPT+DE+ S ++LV A T +
Sbjct: 126 PDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E+SE+ + G+ AH + ++ I LAE A K+ ++ ++ K
Sbjct: 186 VMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPED-TDAIKAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+ +L A I A + K +R EA+ + AL DE P + + K
Sbjct: 245 MKDLVGADIAAAYK--IQKKQDRYEAVGAAKKKAIAALGL-SDENPTGYDPLKLGAIFKE 301
Query: 359 ----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V+R+ I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 302 LEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTG 361
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +AL +LP +
Sbjct: 362 DDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKE 421
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E D
Sbjct: 422 DFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQD------ 475
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A +GR
Sbjct: 476 -GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAH 534
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M + + APR +P++ T+ D +R +IG G + R+I TG ++ ++ D
Sbjct: 535 ILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD 594
Query: 654 GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
G + V A + + K+ +D+I I E EVG IY G V V ++GAFV F G + GL+
Sbjct: 595 GVVKVSASDGA---KIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLV 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 652 HVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVV 694
>gi|384482459|pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
gi|384482460|pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
gi|384482461|pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 436/703 (62%), Gaps = 22/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + + LETG+IAR A+GAV+ M ET VL+T +K +DF PLTV+YQE
Sbjct: 20 RKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQE 79
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL D + D
Sbjct: 80 KTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLEND 139
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ A SAAL LS P+ GPIG R+G + G +++NPT+DE+ S ++LV A T +
Sbjct: 140 PDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA 199
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E+SE+ + G+ AH + ++ I LAE A K+ ++ ++ K
Sbjct: 200 VMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPED-TDAIKAK 258
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+ +L A I A + K +R EA+ + AL DE P + + K
Sbjct: 259 MKDLVGADIAAAYK--IQKKQDRYEAVGAAKKKAIAALGL-SDENPTGYDPLKLGAIFKE 315
Query: 359 ----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V+R+ I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 316 LEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTG 375
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +AL +LP +
Sbjct: 376 DDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKE 435
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E D
Sbjct: 436 DFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQD------ 489
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A +GR
Sbjct: 490 -GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAH 548
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M + + APR +P++ T+ D +R +IG G + R+I TG ++ ++ D
Sbjct: 549 ILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD 608
Query: 654 GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
G + V A + + K+ +D+I I E EVG IY G V V ++GAFV F G + GL+
Sbjct: 609 GVVKVSASDGA---KIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLV 665
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 666 HVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVV 708
>gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans
SPH-1]
gi|226702646|sp|A9BNB8.1|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans
SPH-1]
Length = 753
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/699 (40%), Positives = 437/699 (62%), Gaps = 14/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR A+GAV++ +D+T VL+TV +SK S +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GFY++V V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A ATSAAL +S IP+ GPIG R+G I G++++NP + S ++LV A T LM
Sbjct: 131 AALIATSAALSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMDLVVAGTEAAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++ E + + H + ++ L +AGK ++ E+ + KV+
Sbjct: 191 VESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREAGKPVWDWVAPAKDEELIAKVAA 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE-ESLQVLPKAVDTVRKRVI 360
L + + + +K R +A + VK L + E + ++V D + R++
Sbjct: 251 LGDEALRTAYQ--IRNKQSRTQACREAYAAVKAGLTAQGVEFDGVKVEGMLFD-IEARIV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+A R+DGR VRPI + LP HGS+LF+RG+TQ L TLG +AQR+
Sbjct: 308 RSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL A LP + +FPYT+
Sbjct: 368 DALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKEEFPYTI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------RFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ + + +P+L T+K + + +R +IG G+ R + EETG +I + DGT+T+
Sbjct: 541 EAMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
+ + + ++ +++ I E+E+G IY+G VT + ++GA V G+ GLLH+S+++HE
Sbjct: 601 SSDAAKADEAKRRIEEITA-EVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V RV+D + GQ + ++ + D +G +KLSLKA++ RP
Sbjct: 660 RVERVADYLQEGQIIKVKVMETDEKGRVKLSLKALTERP 698
>gi|383457982|ref|YP_005371971.1| polynucleotide phosphorylase/polyadenylase [Corallococcus
coralloides DSM 2259]
gi|380733936|gb|AFE09938.1| polynucleotide phosphorylase/polyadenylase [Corallococcus
coralloides DSM 2259]
Length = 718
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 301/712 (42%), Positives = 436/712 (61%), Gaps = 24/712 (3%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQE 118
K+ +IG +++ETG++A+ A+G+VV+ +T +L T S++ DFLPLTV+YQE
Sbjct: 2 LKKSVKIGENELSIETGRLAKQADGSVVVRYGDTMLLVTAVSAREKKDVDFLPLTVEYQE 61
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K ++ G IP +Y +REG E+E L R++DR RPLFP G+ +E QV+ASV+S+D + +
Sbjct: 62 KLYSAGRIPGSYFKREGRLTEKETLASRLVDRSCRPLFPEGYAYETQVIASVISADPENE 121
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
DI SAAL +SDIP+ GPI IR+GR+ GQF+ NPT + SDL+LV A +RE
Sbjct: 122 GDIHGITGASAALWVSDIPFNGPIAGIRVGRVGGQFVANPTAKQREQSDLDLVMAVSREA 181
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY-KLSMISEQTLE 297
+M++ A E+SE D+ A L A L+ Q +L + KQ + Y K + I E
Sbjct: 182 IVMVEGGAEEVSEADMVAALEFGRQNAQPALDLQDQLRTELKKQVRSYEKPATIDEGLRN 241
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
+V LA ++A + K R EAL K+ + AL+E+ E V+ K
Sbjct: 242 QVRELALEGVKAGYA--IKEKGARYEALSKVKKAAIAALKEKLGAE----FTPQVEKHAK 295
Query: 358 RVIR-------KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+VI + + G R+ R + VR I E G LP HGS++F+RG+TQ L VT
Sbjct: 296 QVIEDLKYDHMRELTVNGGRIGDRPHNVVRSITNEVGVLPRTHGSAVFTRGETQALVVVT 355
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + QRLE L G KRFMLHY+FPPF +NE G RREVGHG LAE+AL ++
Sbjct: 356 LGTSEDEQRLELLSGQAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMI 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P + FPYTVR+ SE++ S+GS+SMA+VCGG++ALMDAG+P++ VAG+++GLV E
Sbjct: 416 PASDSFPYTVRLVSEILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKE---- 471
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE IL+DILG EDHLGDMDFK+ GT G+T+IQ+DIK G+ +I+ LE A +
Sbjct: 472 -GE--KIAILSDILGDEDHLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQ 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR IL M + +SAPR + + +PR+ T++ + ++ +IGP G + + I TG I+
Sbjct: 529 GREHILAEMAKTLSAPRKEISQFAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGAAIN 588
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D G + + + N ++ + + + RE E+G IY G V + E+GAFVE G G
Sbjct: 589 IEDTGRVDIASANGEAVKAAIAMIQALT-REAEIGKIYTGTVRKIAEFGAFVELFPGTDG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
L+H+SELS + V VSDV+S G ++ ++ + D G I+LS K A++ R A
Sbjct: 648 LIHISELSDKRVKSVSDVLSEGDEVLVKVVSIDKTGKIRLSRKEAMAERANA 699
>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
Length = 711
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/699 (40%), Positives = 431/699 (61%), Gaps = 14/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG +AR A AV+ MD+T V +V K D+V +DF PLTV+YQE+
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKK-DAVEGQDFFPLTVNYQERT 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L+ R+IDRPIRPLF F +EVQV+A+V+S + PD
Sbjct: 69 YAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVSVNPNVQPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T L
Sbjct: 129 IVTMIGTSAALAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLDLVVAGTEGAVL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+++ A + H + + A + ++ + EK++
Sbjct: 189 MVESEADILSEEEMLAAVVYGHDQQQVVINAINEFAAEVATPSWDWVAPQENTALKEKIA 248
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE + + K R E + I DV A+ E D + + + K + + K+V+
Sbjct: 249 QLAEVRLTEAYQ--IIEKMARYEKVAAIKADVIAAILAEDDSQDVMKIKKLLGALEKQVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R RIIA R+DGR+ D +R + +G LP HGSSLF+RG+TQ L T TLG +AQ +
Sbjct: 307 RGRIIAGEKRIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G FMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FPYTV
Sbjct: 367 DELTGERKDYFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSADEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + ++ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDE-------NFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ I+ R +PR+ T+K ++ ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 540 QAIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRMLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAQEAIRRI-LQITAEVEVGKIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ +VSDV++ GQ++ ++ + D +G ++LS+K +P
Sbjct: 659 RIEKVSDVLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 697
>gi|384482465|pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 296/703 (42%), Positives = 436/703 (62%), Gaps = 22/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + + LETG+IAR A+GAV+ M ET VL+T +K +DF PLTV+YQE
Sbjct: 20 RKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQE 79
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL D + D
Sbjct: 80 KTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLEND 139
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+ A SAAL LS P+ GPIG R+G + G +++NPT+DE+ S ++LV A T +
Sbjct: 140 PDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA 199
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E+SE+ + G+ AH + ++ I LAE A K+ ++ ++ K
Sbjct: 200 VMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPED-TDAIKAK 258
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
+ +L A I A + K +R EA+ + AL DE P + + K
Sbjct: 259 MKDLVGADIAAAYK--IQKKQDRYEAVGAAKKKAIAALGL-SDENPTGYDPLKLGAIFKE 315
Query: 359 ----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
V+R+ I+ G+R+DGR + VRPI E G LP HGS+LF+RG+TQ + TLG
Sbjct: 316 LEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTG 375
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +AL +LP +
Sbjct: 376 DDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKE 435
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E D
Sbjct: 436 DFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQD------ 489
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI I+ + L A +GR
Sbjct: 490 -GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAH 548
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M + + APR +P++ T+ D +R +IG G + R+I TG ++ ++ D
Sbjct: 549 ILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD 608
Query: 654 GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
G + V A + + K+ +D+I I E E+G IY G V V ++GAFV F G + GL+
Sbjct: 609 GVVKVSASDGA---KIKAAIDWIKSITDEAEIGKIYDGKVVKVVDFGAFVNFFGAKDGLV 665
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 666 HVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVV 708
>gi|408377186|ref|ZP_11174789.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
albertimagni AOL15]
gi|407749145|gb|EKF60658.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
albertimagni AOL15]
Length = 714
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 296/697 (42%), Positives = 438/697 (62%), Gaps = 15/697 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLTV+YQEK
Sbjct: 8 EIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSAKPGQDFFPLTVNYQEKT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ +E QV+ +V+ D + DPD
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNETQVVVTVVQHDLENDPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
++A A SAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A T++ L
Sbjct: 128 VLAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A+E++E+ + + H ++ I+LAE A K+ +E++ S E +S
Sbjct: 188 MVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDHSALEAEMLS 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL--QVLPKAVDTVRKR 358
+AE + A + K +R A+D + VK E +E +V+ ++ +
Sbjct: 248 -IAETELRAAYK--ITQKADRYAAVDAVKAKVKAHFFPEGEEPKYTNEVIGAVFKHLQAK 304
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R I+ R+DGR L VR I E G LP HGS+LF+RG+TQ + TLG + Q
Sbjct: 305 IVRWNILDTKSRIDGRDLSTVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQ 364
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP FPY
Sbjct: 365 YVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPY 424
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E GE +
Sbjct: 425 TLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE-----GE--RFA 477
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A GR IL
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALAQAQGGRKHILGE 537
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M I+ R+Q +PR+ + D +R +IG G + R+I E+TG +I++ DGT+
Sbjct: 538 MANAITEGRSQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVK 597
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + + +E + + I+ E EVG IY+G V ++GAFV F G + GL+H+S+L+
Sbjct: 598 IASASGKEIEAARKWIHSIVA-EPEVGVIYEGTVVKTADFGAFVNFFGSRDGLVHISQLA 656
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++ SDVV G ++ ++ +G D RG ++LS+K V
Sbjct: 657 SERVAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|397905349|ref|ZP_10506206.1| Polyribonucleotide nucleotidyltransferase [Caloramator australicus
RC3]
gi|397161622|emb|CCJ33540.1| Polyribonucleotide nucleotidyltransferase [Caloramator australicus
RC3]
Length = 703
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/707 (42%), Positives = 436/707 (61%), Gaps = 25/707 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGDSVRDFLPLTVDYQEKQ 120
E E+ R + GK A +NGAV+L +T +L+T +S + DF PL+VDY+E+
Sbjct: 6 EKEVAGRTFKADIGKYALLSNGAVLLSYGDTVILATANASPEPKEGIDFFPLSVDYEERL 65
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP +++REG P E+ +L R IDRPIRPLFP G+ ++VQ++ +VLS D P+
Sbjct: 66 YAIGKIPGGFIKREGKPTEKAILSARAIDRPIRPLFPKGYRNDVQIICTVLSVDPDNPPE 125
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A NA S AL +SDIP+ GP+ + IGR+ G+ IVNPT +E SDL+L+ + T+E+ +
Sbjct: 126 IVAMNAASLALCISDIPFEGPVSSVLIGRVDGKLIVNPTAEEREKSDLHLIVSATKERVM 185
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MI+ A+E++E+D+ + + + Q +AEK GK+K +I E L KV
Sbjct: 186 MIEAGAKEVTEEDMFEAIMFGFKACQEINDFQAEIAEKIGKEK------VIPE--LYKVP 237
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLP---KAVDTVRK 357
+ E + TD + + + +++ QD ++EE E ++ P K +D V
Sbjct: 238 DEIENAVREYATDKLWEAMQHTDRVER--QDHVDKVKEEVFEHFAEIFPECEKDIDDVMY 295
Query: 358 RV----IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
R+ +RK I+ E R DGR +E+RP+YC+ G LP HGS LF RG TQVL TLGA
Sbjct: 296 RIMKEHVRKMILEEKRRPDGRSFEEIRPLYCDVGILPRTHGSGLFQRGQTQVLTVATLGA 355
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q L+ L KR+M HY+FPP+ EV G RRE+GHG LAE+AL V+P E
Sbjct: 356 LGDVQILDGLGDEEFKRYMHHYNFPPYSTGEVKFLRGPGRREIGHGALAERALEPVIPSE 415
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+FPYT+R+ SEV++S+GSTS A+VCG ++ALMDAG+P++ VAG+++GLV+ D S E
Sbjct: 416 EEFPYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKRPVAGIAMGLVTSEDLSQAE 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
ILTDI G+ED GDMDFK+AGT G+TAIQ+D K G+P +II + + A K RL
Sbjct: 476 -----ILTDIQGIEDFFGDMDFKVAGTEKGITAIQVDTKIKGLPEEIIKKAIYQARKARL 530
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
+IL M I PR + + +PR+ ++ D + +R +IGP G KI ETG +I +
Sbjct: 531 EILKVMLERIPQPRKELSKYAPRIISMVIDPEKIRDVIGPGGKTINKIIAETGVKIDIEE 590
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG L + + K+ +K+ I R++EVG +Y G V + +GAFVE G++GL H
Sbjct: 591 DGRLYISCPDPE-KGKLAQKMIEGITRDVEVGEVYLGRVNRITPFGAFVEILPGKEGLCH 649
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+S+L+HE V++V DVV+VG ++ ++ D G I LS K P+PE
Sbjct: 650 ISKLAHERVNKVEDVVNVGDEILVKVTEIDNLGRINLSRKDAIPKPE 696
>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
053442]
gi|418287979|ref|ZP_12900504.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM233]
gi|418290239|ref|ZP_12902408.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM220]
gi|421556983|ref|ZP_16002892.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
80179]
gi|189037311|sp|A9M3J0.1|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
053442]
gi|372201926|gb|EHP15797.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM220]
gi|372202788|gb|EHP16558.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM233]
gi|402335668|gb|EJU70932.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
80179]
Length = 706
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 433/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|422111361|ref|ZP_16380985.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 706
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|430750263|ref|YP_007213171.1| polyribonucleotide nucleotidyltransferase [Thermobacillus composti
KWC4]
gi|430734228|gb|AGA58173.1| polyribonucleotide nucleotidyltransferase [Thermobacillus composti
KWC4]
Length = 699
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/696 (40%), Positives = 432/696 (62%), Gaps = 13/696 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E ++G R + LETG++A+ AN AV + +T VL T T+SK F PLTV+++E+ +
Sbjct: 6 EMQLGGRPLVLETGRLAKQANAAVTVRYGDTVVLCTATASKEPKDLGFFPLTVNFEERLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP +++REG P E+ +L R+ DRPIRPLFP GF +EVQ++ V+S D P+I
Sbjct: 66 SVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNEVQIVDLVMSVDQDCSPEI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SDIP+ GPIG + +GR+ G+F++NPT+++ SD+ +V A TR+ +M
Sbjct: 126 SAMIGTSAALSISDIPFNGPIGGVIVGRVDGEFVINPTVEQEERSDIYVVVAGTRDAIMM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E+ + + H E K ++ L AGK K E +L + E+ V
Sbjct: 186 VEAEADEVPEEVILEAIMFGHEEIKKIVDMIEELVSVAGKPKMEVQLHAVDEEVNRAVRE 245
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKRV 359
A A + P K R +A+D + D EE E E + + + + + K
Sbjct: 246 FASARLIEAIRVP--EKQARQDAIDAVNADAIAYFEEVYAETPEKMADVKEVLHDIVKEE 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ I E +R DGR L+E+RPI CE G LP HGS LF+RG TQ L TLGA + Q
Sbjct: 304 VRRLITHEKIRPDGRALNEIRPIECEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ + +KRFM HY+FPPF + E RRE+GHG L E+AL V+PPE++FPYT
Sbjct: 364 LDGIDLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALAKVIPPESEFPYT 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GL+ + D + I
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGD-------QFSI 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI +I+ + LE A +GR+ IL M
Sbjct: 477 LSDIQGMEDHLGDMDFKVAGTAKGVTAIQMDIKIDGIDREILSQALEQAREGRMYILGKM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
I PR Q +P++ ++ + D +R +IG G + KI E+TG +I + DG + +
Sbjct: 537 LEVIKEPRKQLSPYAPKIIIMQINPDKIRDVIGAGGKIINKIIEDTGVKIDIEQDGKVYI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ + + EK + ++ I+ +++ VG IY G V ++++GAFVE ++GL+H+S+LS
Sbjct: 597 ASADEAANEKARQIIEGIV-KDVVVGEIYVGTVRRIEKFGAFVEILPNKEGLVHISQLST 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
E V++ DVV +G +++++ D G I LS KAV
Sbjct: 656 ERVAKTEDVVKIGDKITVKVTEIDQMGRINLSRKAV 691
>gi|319778373|ref|YP_004129286.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
MCE9]
gi|397662155|ref|YP_006502855.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
ATCC 35865]
gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
MCE9]
gi|394350334|gb|AFN36248.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
ATCC 35865]
gi|399114703|emb|CCG17498.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
14/56]
Length = 733
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/712 (40%), Positives = 450/712 (63%), Gaps = 19/712 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ F F+ G +T+ETG+IAR A+GAVV+ M T VL+TV ++K + +DF PLT
Sbjct: 1 MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP Y +REG P E+E L R+IDRP+RPLFP GFY+EVQV+ VLS
Sbjct: 61 VDYVEKSYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI + +SAAL +S +P+ GPIG R+G I GQ+++NP+ ++ SD++LV A
Sbjct: 121 DPEIDPDIASMIGSSAALSISGVPFDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+++SE+ + G+ H + + L ++AGK + ++ + +E
Sbjct: 181 GTEQAVLMVESEAKQLSEEIMLGGVVFGHEQLQLAINAIHDLVKQAGKPEWDWTPAPKNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ +V A A + F K R L ++ VK++L ++ EES P V+
Sbjct: 241 DLISQVREYALAGLTEAFG--IREKQLRSTKLKEVSTQVKESLAKKA-EESGTDAPDEVE 297
Query: 354 T------VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++R +I+ R+DGR VRPI G LP HGS+LF+RG+TQ L
Sbjct: 298 IDNIIFDLESSIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALV 357
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++S++G + FMLHY+ PPF EVG+ RRE+GHG LA++AL+
Sbjct: 358 IATLGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALI 417
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
A LP ++DF YT+R+ SE+ S+GS+SMA+VCGGS+A+MDAG+P+++HVAGV++GL+ E
Sbjct: 418 ATLPNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEG 477
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L
Sbjct: 478 NK-------FAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQ 530
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GRL IL M+ IS R + +PR+ +L + + +R +IG GA R + EETG
Sbjct: 531 AKEGRLHILGKMKEAISGSRNELSSFAPRMISLNINPEKVRDVIGKGGATIRTLTEETGC 590
Query: 648 RISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I ++ DG +T+ + + ++ +++ + E+E+G +Y+G V + ++G ++ G
Sbjct: 591 QIEITDDGHITIASSDLEAAQEAQRRIEELTA-EVEIGKVYEGTVIKLLDFGGVLQILPG 649
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ GLLH+SE+++ + ++DV+S+GQ+++++ I D RG I+LS KA+ P
Sbjct: 650 KDGLLHISEIANFRIKDINDVLSIGQKVNVKVIESDDRGRIRLSAKAIGGIP 701
>gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida
LFI1238]
gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida
LFI1238]
Length = 718
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/695 (40%), Positives = 435/695 (62%), Gaps = 18/695 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V + K + +DF PLTV+YQE+ +
Sbjct: 19 FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTY 78
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP+ F +EVQV+A+V+S + +PD+
Sbjct: 79 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDM 138
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+ ATSAAL ++ +P+ GPIG R+G I G+ ++NP+ EL+ S L+LV + T LM
Sbjct: 139 ITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVVSGTEAAVLM 198
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+++ + + H + ++ A + ++ +++ + +V+
Sbjct: 199 VESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVVNAELKAQVAE 258
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKR 358
LAE + + K R E + I +V AL E DE ++ + A++ K
Sbjct: 259 LAETRLSEAYQ--ITEKMARYEQVGAIKSEVVAALLVQNEALDEREIRGMLGALE---KN 313
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
V+R RIIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ
Sbjct: 314 VVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 373
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL+G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 374 IIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPY 433
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
TVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+
Sbjct: 434 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGD-------DFV 486
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL
Sbjct: 487 VLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILTV 546
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M+ IS R + +PR+ T+K +D ++ +IG GA+ R + EETG I + DGT+
Sbjct: 547 MDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIK 606
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ A + ++ + +++ I E+EVG IY G V + ++GAFV G ++GL+H+S+++
Sbjct: 607 IAATEGAAAKEAIRRIEEITA-EVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHISQIA 665
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E + +V+D + VGQ++ + + D +G I+LS+K
Sbjct: 666 EERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSIK 700
>gi|407893228|ref|ZP_11152258.1| polynucleotide phosphorylase/polyadenylase [Diplorickettsia
massiliensis 20B]
Length = 693
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 303/713 (42%), Positives = 432/713 (60%), Gaps = 31/713 (4%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK---GDSVRDFLPL 112
++ K+ FE+G+ +TLETG +AR A AVV+ ++ T VL TV K + DF PL
Sbjct: 1 MKPLKKVFELGTHQVTLETGTVARQATAAVVVTLEGTTVLVTVVGRKPSPHEKPSDFFPL 60
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TV YQE+ +A G +P Y +REG P E+E+L R+IDRPIRPLFP F HEVQ++A+VLS
Sbjct: 61 TVHYQERSYAAGRVPGGYFKREGRPTEKEILTSRLIDRPIRPLFPETFRHEVQIVATVLS 120
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
S+ + + DI A SAAL LS +P+ GPI +R+G I G + +NPT L S+L+LV
Sbjct: 121 SNPEINADIPAMLGASAALALSGLPFKGPIAAVRVGYIKGGYQLNPTFKALENSELDLVV 180
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T LM++ QA E+SE + + H ++ L +AG E+ S
Sbjct: 181 AGTESAVLMVESQAAELSEDAMLGAILFGHQTMQPAIQAIKELVAEAGNPSWEWSTPEAS 240
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+ +A +E+++ K R LD + + KA ++ DEE V KAV
Sbjct: 241 Q---------PQAELESIYQ--VAEKISRKTQLDALQE---KACQKWMDEEK-GVTEKAV 285
Query: 353 ----DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
+ +R +R+RI+ R+DGR VRPI G LP HGS LF+RG+TQ +
Sbjct: 286 LDCLAALEERCVRERILNGLPRIDGRDQKTVRPITISPGFLPRTHGSVLFTRGETQAIVV 345
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ +E+L G + FMLHY+FPP+ + E G+ RRE+GHG LA++AL A
Sbjct: 346 ATLGTDRDAQIVEALDGEGRETFMLHYNFPPYSVGETGQVGSPKRREIGHGNLAKRALRA 405
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
VLP E+DFPY +R+ SE+ S+GS+SMATVCG S+ALMDAG+PL++ VAG+++GLV E +
Sbjct: 406 VLPSESDFPYVLRIVSEITESNGSSSMATVCGASLALMDAGVPLKKPVAGIAMGLVKEAE 465
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ LE A
Sbjct: 466 -------RFAVLTDILGDEDHLGDMDFKVAGTAEGITALQMDIKIDGITEEILRAALEQA 518
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
+GR IL M + PR + +PR+ TLK + D +R LIG GA R I EETG
Sbjct: 519 KEGRHHILGVMNNVLPLPRIEVSPYAPRITTLKINPDKIRDLIGKGGATIRSITEETGTL 578
Query: 649 ISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I +S DG + + N E L+++ + E+EVG IY+G V + ++GAFV G+
Sbjct: 579 IDISDDGLVRISTSNLQACEAALDRIKKVTA-EVEVGRIYEGPVVKLTDFGAFVNILPGR 637
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
GL+H+S++S+E V V+D V GQ + ++ + D +G ++L++K V + EA
Sbjct: 638 DGLVHISQISNERVENVTDKVKEGQIVKVKVLEVDRQGRVRLTMKDVEMQSEA 690
>gi|257096736|sp|B6ENE6.2|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 709
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/695 (40%), Positives = 435/695 (62%), Gaps = 18/695 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V + K + +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP+ F +EVQV+A+V+S + +PD+
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDM 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+ ATSAAL ++ +P+ GPIG R+G I G+ ++NP+ EL+ S L+LV + T LM
Sbjct: 130 ITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVVSGTEAAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+++ + + H + ++ A + ++ +++ + +V+
Sbjct: 190 VESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVVNAELKAQVAE 249
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKR 358
LAE + + K R E + I +V AL E DE ++ + A++ K
Sbjct: 250 LAETRLSEAYQ--ITEKMARYEQVGAIKSEVVAALLVQNEALDEREIRGMLGALE---KN 304
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
V+R RIIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ
Sbjct: 305 VVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 364
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
++SL+G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPY
Sbjct: 365 IIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPY 424
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
TVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+
Sbjct: 425 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGD-------DFV 477
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILTV 537
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLT 657
M+ IS R + +PR+ T+K +D ++ +IG GA+ R + EETG I + DGT+
Sbjct: 538 MDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIK 597
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ A + ++ + +++ I E+EVG IY G V + ++GAFV G ++GL+H+S+++
Sbjct: 598 IAATEGAAAKEAIRRIEEITA-EVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHISQIA 656
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E + +V+D + VGQ++ + + D +G I+LS+K
Sbjct: 657 EERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSIK 691
>gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
tropicalis]
Length = 789
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 296/732 (40%), Positives = 441/732 (60%), Gaps = 25/732 (3%)
Query: 39 CEPAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTV 98
C P TP+ A V ++G+R + + +GK+ARFA+G VL + ++ V+ T
Sbjct: 37 CYRIPLTPSRREASGAV------TVDLGARKLEISSGKLARFADGCAVLKLGDSSVMVTA 90
Query: 99 TSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPA 158
S S F+PL VDY+EK A G IP ++RRE E+L RIIDR +RPLFPA
Sbjct: 91 VSRTKPSPSQFMPLVVDYREKSAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPA 150
Query: 159 GFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNP 218
G+++E Q++ ++L+ DG PD++A N SAAL LSDIPW GP+G +R+G + G+FI+NP
Sbjct: 151 GYFYETQILCNLLAVDGVNKPDVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINP 210
Query: 219 TMDELSLSDLNLVYA-CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAE 277
T E+S S LNLV A + + +M++ A + ++D ++L + + ++ +LA+
Sbjct: 211 TRKEMSSSLLNLVIAGGVQSQIVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAK 270
Query: 278 KAGKQKKEY-KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL 336
+ GK+K+ K+ +E A I AVF+D ++ K R EA++KI + ++ L
Sbjct: 271 EHGKEKRTIQKIFQAPVDIVESARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETL 330
Query: 337 EEEC-DEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGS 395
E D E +++ +A V K V R I+ E R DGR L +R I CE LHGS
Sbjct: 331 RERFPDAEPFEIM-EAFSAVSKEVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGS 389
Query: 396 SLFSRGDTQVLCTVTLGAPAEAQRLE----SLVGPPTKRFMLHYSFPPFCINEVGKRVGL 451
+LF RG TQVLCTVT + + + + +L G K FMLHY FPP+ NE+GK G+
Sbjct: 390 ALFQRGQTQVLCTVTYDSIESSMKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGI 449
Query: 452 NRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIP 511
NRRE+GHG LAEKAL V+P DFP+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P
Sbjct: 450 NRRELGHGALAEKALRPVIP--KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVP 507
Query: 512 LQEHVAGVSVGLVSEVDP-STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLD 570
+ VAGV++GL+++ P GEI+DYR+LTDILG+ED+ GDMDFK+AGT G+TA+Q D
Sbjct: 508 ISAAVAGVAIGLITKYSPDKNGEIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQAD 567
Query: 571 IKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRL 630
IK G+PL I+ E ++ A + +I+ M + IS PR NSP T++ R
Sbjct: 568 IKIPGLPLKIVMEAIQQATVAKKEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRF 627
Query: 631 IGPLGALKRKIEEETGGRIS-VSDGTLTVVAKNRSVMEKVLEKVDFIIG----REIEVGG 685
+GP G +KI+ ETG +S + + T +V A S M + E ++ I +++E G
Sbjct: 628 VGPGGYNLKKIQAETGVTVSQIDEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGA 687
Query: 686 IYKGVVTSVKEYGAFVE-FNGGQQGLLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD- 742
+Y +T +++ G V+ + LLH S+L H + S + + +GQQ+ ++ G+D
Sbjct: 688 VYTATITEIRDIGVMVKLYPNMTPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDP 747
Query: 743 VRGNIKLSLKAV 754
G ++LS K +
Sbjct: 748 TDGRMRLSRKVL 759
>gi|427414412|ref|ZP_18904602.1| polyribonucleotide nucleotidyltransferase [Veillonella ratti
ACS-216-V-Col6b]
gi|425714788|gb|EKU77791.1| polyribonucleotide nucleotidyltransferase [Veillonella ratti
ACS-216-V-Col6b]
Length = 689
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 302/698 (43%), Positives = 433/698 (62%), Gaps = 14/698 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVD 115
+E F + ++ R +T+ETG++A+ A GA ++ +T VL T T+SK DF PLTVD
Sbjct: 1 MEQF--QMDLAGRTLTIETGELAKQAGGAALVRYGDTVVLVTATASKEAKDIDFFPLTVD 58
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK +A G IP +++REG P E +L R+IDRPIRPLF G +EV V A+VLS D
Sbjct: 59 YEEKMYAVGRIPGGFVKREGRPPETAILHSRLIDRPIRPLFDKGCRNEVHVCATVLSVDQ 118
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
P+I SAAL LSDIPW GPI +RIGR+ G F++NPT+ +L +DLN+V A T
Sbjct: 119 DNAPEICGMIGASAALALSDIPWAGPIAGVRIGRVNGSFVINPTVAQLEATDLNVVVAGT 178
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
++ LM++ A+E++E L + AH E + + Q + AGK+K+ + E
Sbjct: 179 KDAILMVEGGAQEVAEDVLLDAIMTAHEEIKRIVSFQEEMVAVAGKEKRVLPTHTLDEDV 238
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
L V A ++ K +R D++ D + EE +++ + A++ +
Sbjct: 239 LAAVKEYAHDALDKAVR--CADKQQRDAQQDEVYADTRVHF-EEIYPDNMDDVNMALEKM 295
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
K ++R I E +R DGRQLDEVRPI G LP HGS LF+RG TQVL TL +
Sbjct: 296 TKEIVRHMITVEKIRPDGRQLDEVRPISVRVGVLPRTHGSGLFTRGQTQVLNICTLAPLS 355
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
E Q ++ + KR++ HY+FP + + E G RRE+GHG LAE+ALLAVLP E +
Sbjct: 356 EKQTIDGIGIETEKRYIHHYNFPSYSVGEARSSRGPGRREIGHGALAERALLAVLPSEEE 415
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPY +R+ SEV+ S+GS+SMA+VCG +++LMDAG+P++ VAG+++GLV++ GE
Sbjct: 416 FPYAMRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQ-----GE-- 468
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
Y ILTDI G+ED LGDMDFK+AGT GVTAIQ+DIK +G+ +I+ E LE AHKGR+ I
Sbjct: 469 HYTILTDIQGMEDALGDMDFKVAGTAKGVTAIQMDIKISGLSREILKEALEQAHKGRMHI 528
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
+ M I APR +PR+ T+ D D +R +IG G + R I EETG +I + DG
Sbjct: 529 MGKMLAVIDAPRDNMSPWAPRIITMNIDPDKIRDVIGQGGKVIRGIIEETGAKIDIEDDG 588
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
T+ + A + K +E + + +E+EVG +Y G VT + +GAFVE G++GL+H+S
Sbjct: 589 TIFIAAVEEAAANKAIEIITNLT-KEVEVGEVYLGKVTRLMNFGAFVEVLPGKEGLVHIS 647
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+L+ E V V DVV+VG ++ ++ I D +G I LS K
Sbjct: 648 KLAKERVENVEDVVNVGDEIMVKVIEIDKQGRINLSRK 685
>gi|348590479|ref|YP_004874941.1| polyribonucleotide nucleotidyltransferase [Taylorella
asinigenitalis MCE3]
gi|347974383|gb|AEP36918.1| Polyribonucleotide nucleotidyltransferase [Taylorella
asinigenitalis MCE3]
Length = 732
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/712 (40%), Positives = 450/712 (63%), Gaps = 19/712 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+ F F+ G +T+ETG+IAR A+GAVV+ M T VL+TV ++K + +DF PLT
Sbjct: 1 MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
VDY EK +A G IP Y +REG P E+E L R+IDRP+RPLFP GFY+EVQV+ VLS
Sbjct: 61 VDYVEKAYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIVHVLSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI + +SAAL +S +P+ GP+G R+G I GQ+++NPT ++ S ++LV A
Sbjct: 121 DPEIDPDIASMIGSSAALAVSGVPFNGPLGAARVGYIDGQYVLNPTESQIKDSQMDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+++SE + G+ H + + L ++AGK + ++ + +E
Sbjct: 181 GTEQAVLMVESEAKQLSEDVMLGGVVFGHEQLQLAINAIHELVKQAGKPEWDWVAAPKNE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ + V AEA ++ ++ K R L ++ VK++L ++ EE+ P V+
Sbjct: 241 ELISAVREQAEASLKEAYS--IREKQLRSNKLKEVSAQVKESLAKKA-EEAKTDAPDEVE 297
Query: 354 T------VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ ++R +I+ R+DGR VRPI G LP HGS+LF+RG+TQ L
Sbjct: 298 IDNILFDLEASIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALV 357
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++S++G + FMLHY+ PPF EVG+ RRE+GHG LA++AL+
Sbjct: 358 VATLGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALV 417
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
A LP ++DF YT+R+ SE+ S+GS+SMA+VCGGS+A+MDAG+P+++HVAGV++GL+ E
Sbjct: 418 ATLPNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEG 477
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
+ + +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L
Sbjct: 478 NK-------FAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQ 530
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GR+ IL M IS R + +PR+ ++ + + +R +IG GA R + EETG
Sbjct: 531 AREGRMHILGKMREAISGSREELSSFAPRMISMTINPEKVRDVIGKGGATIRSLTEETGC 590
Query: 648 RISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I ++ DG +T+ + + ++ +++ + E+E+G +Y+G V + ++G ++ G
Sbjct: 591 QIEITDDGHITIASADLEAAQEAQRRIEELTA-EVEIGKVYEGTVIKMLDFGGVLQILPG 649
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ GLLH+SE+++ + ++DV+S+GQ+++++ I D RG I+LS KA+ P
Sbjct: 650 KDGLLHISEIANFRIKDINDVLSIGQKVNVKVIESDDRGRIRLSAKAIGGIP 701
>gi|329113570|ref|ZP_08242350.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
DM001]
gi|326697092|gb|EGE48753.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
DM001]
Length = 716
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 306/718 (42%), Positives = 439/718 (61%), Gaps = 29/718 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ F++E E G R + LETGK+AR A+GAV++ ET VL T +K +DF PLT
Sbjct: 1 MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKEVKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP + +REG P E E LV R+IDRP+RPLFP GF +EVQV+A+VL+
Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DP I A SAAL LS IP+ GP+G R+G G FI+NPT +++ SDL LV A
Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ--------KKE 285
T E LM++ +A E+SE+ + + H L+ I LAE A K+ K+E
Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240
Query: 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+L E+ K+ +A+A+ E Y K + A V+K +E D +
Sbjct: 241 IQLRKQVEKAGRKL--IADAYKEKQ-KQVRYEKLKAARA-----AIVEKLTADELDVAAA 292
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ + K ++ V+R ++ G R+DGR L VRPI E G LP +HGSSLF+RG+TQ
Sbjct: 293 KPMIKDLEA---DVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQA 349
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG + Q +++L G FMLHY+FPPF + E G+ RRE+GHG LA +A
Sbjct: 350 LVVTTLGTGQDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRA 409
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ ++P +FPYTVRV SE+ S+GS+SMATVCGGS+ALMDAG+PL+ VAG+++GL+
Sbjct: 410 IHPLMPSRKEFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIK 469
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+ L
Sbjct: 470 EGD-------DFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIAL 522
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A GR+ IL M + ++ RT +P++ T+K + +R +IG G + R+I E +
Sbjct: 523 GQARDGRMHILGEMSKALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYS 582
Query: 646 GGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G ++ + DGT+T+ A + +K +++++ I+ E E+G IY G V ++GAFV F
Sbjct: 583 GAKVDIGDDGTITIAAASDDQAQKAIDRINGIVA-EPELGRIYDGKVVKTADFGAFVNFL 641
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ V + +DVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 642 GARDGLVHISELAQGRVGKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699
>gi|433513116|ref|ZP_20469910.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63049]
gi|432248793|gb|ELL04217.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63049]
Length = 706
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPKDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|339483022|ref|YP_004694808.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. Is79A3]
gi|338805167|gb|AEJ01409.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. Is79A3]
Length = 706
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/706 (42%), Positives = 450/706 (63%), Gaps = 19/706 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTV 114
++ K+ G +TLETG+IAR A+GAV++ MD+T VL TV +K +DF PLTV
Sbjct: 1 MKPIKKSITYGRHQLTLETGEIARQAHGAVMVTMDDTVVLVTVVGAKTIKPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
DYQEK +A G IP ++ +REG P E+E L R+IDRPIRPLFP GFY+EVQ++A+V+S+D
Sbjct: 61 DYQEKFYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSAD 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ D DI + TSAAL+LS IP+ GP+G R+G I ++++NPT EL + LNLV A
Sbjct: 121 TEVDADIPSIIGTSAALILSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T++ LM++ +A E+SE+ + + H + + A++AG ++ +
Sbjct: 181 TQQAVLMVESEAMELSEEVMLGAVIFGHEQMQAVINAINEFADEAGVTAWDWTPPVKDTS 240
Query: 295 TLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE---SLQVLPKA 351
EK+++LAEA + + K R EA++ I Q + + E D E LQ +A
Sbjct: 241 FEEKIASLAEADLRMAYK--IKQKQARSEAIEAISQRI--STEIGVDTEGGPDLQSFKEA 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ +++R +I+ R+DGR VR I +G LP HGS+LF+RG+TQ L TL
Sbjct: 297 FFALEAKIVRNQILDGEPRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAVATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGL-NRREVGHGTLAEKALLAVL 470
G + Q+++SL G RFMLHY+ PP+ E+G RVG RRE+GHG LA++A+ AVL
Sbjct: 357 GTARDEQKIDSLQGDYNDRFMLHYNMPPYATGEIG-RVGTPKRREIGHGRLAKRAIAAVL 415
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +F Y++RV SE+ S+GS+SMA+VCGG +ALMDAG+PL+ HVAG+++GL+ + +
Sbjct: 416 PSPEEFGYSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKAHVAGIAMGLIKDGN-- 473
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI DI+ L AH+
Sbjct: 474 -----RFAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKDIMHAALIQAHE 528
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR+ IL M++ + + R ++PR+ +K + + +R +IG GA+ R + EETG I
Sbjct: 529 GRMHILQIMKQALPSTREDISVHAPRIIKIKINPEKIRDVIGKGGAVIRALTEETGTTID 588
Query: 651 VS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ DG +T+ + E ++++ I E+EVG IY G+V + ++GA V G+ G
Sbjct: 589 ITDDGQVTIACVSSEGGELARKRIEDITA-EVEVGKIYDGIVLKLLDFGAIVSVLPGKDG 647
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVS 755
LLH+S++++E V+ VSD ++ GQQ+ ++ + D +G ++LS+KAVS
Sbjct: 648 LLHISQIANERVNNVSDHLNEGQQVRVKVLEADDKGRLRLSMKAVS 693
>gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase [Paracoccus denitrificans PD1222]
gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222]
Length = 736
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/712 (41%), Positives = 439/712 (61%), Gaps = 22/712 (3%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFL 110
G ++ + K+ + G +TLETGK+AR A+G+V+ + ET V++ VT +K +DF
Sbjct: 19 GNQMFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFF 78
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTV YQEK +A G IP + +RE P E+E L R+IDRPIRPLF GF HEV VM +V
Sbjct: 79 PLTVHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTV 138
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNP---TMDELSLS- 226
LS D DPDI+A A SAAL +S +P+ GPI R+G G++++NP MD L L+
Sbjct: 139 LSHDLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNP 198
Query: 227 --DLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
L+LV A TR+ +M++ +A E++E ++ ++ H ++ I LAE A K+
Sbjct: 199 EQRLDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPF 258
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES 344
E+ S +V +L EA + A +Y+ ++GE D I K L +EE
Sbjct: 259 EFASPDYS-ALYARVKSLGEADMRA-----AYAIHDKGERRDAIEVAKAKVLAGLSEEEL 312
Query: 345 LQV-LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDT 403
L L A+ + ++R II R+DGR VRPI CE G LP HGSSLF+RG+T
Sbjct: 313 LDPNLGSALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGET 372
Query: 404 QVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAE 463
Q L TLG + Q +++L G F+LHY+FPP+ + EVG+ RRE+GHG LA
Sbjct: 373 QALVVTTLGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAW 432
Query: 464 KALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGL 523
+AL AVLP DFPYT+RV SE+ S+GS+SMA+VCGGS+++MDAG+PL+ VAGV++GL
Sbjct: 433 RALQAVLPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGL 492
Query: 524 VSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICE 583
+ E D + +LTDILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ +
Sbjct: 493 ILEEDGR------WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQ 546
Query: 584 CLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEE 643
L A GRL IL M + +S R + ++PR+ T+ D +R +IG G + R+I E
Sbjct: 547 ALAQAKDGRLHILGEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVE 606
Query: 644 ETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVE 702
+G ++ +S DGT+ + + N ++K + + I+ E E G IY G V + ++GAFV
Sbjct: 607 TSGAKVDISDDGTIKIASANADSIKKAYDMIYSIVA-EPEEGKIYVGKVVKLVDFGAFVN 665
Query: 703 FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
F G + GL+HVS+++ + ++ ++V+ GQ++ ++ +G D RG ++L +K V
Sbjct: 666 FFGKRDGLVHVSQIAGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMV 717
>gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus
norvegicus]
gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus]
Length = 784
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/708 (41%), Positives = 429/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G R + + +GK+ARFA+G V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGHRKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L R+IDR IRPLFPAG++++ QV+ ++L+ DG +PDI+A
Sbjct: 110 GRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDILA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N SAAL LSDIPW GP+G +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ K+ S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKIFTPSAEIVKYTHT 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
+A + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 IAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQLEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE GK G+NRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+ VAGV+VGLV++ +P GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK G+P+ II E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKREILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T+K + IGP G +K++ ETG IS V + T
Sbjct: 588 TMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ A + M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SIFAPTPTAMH---EARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH S+L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3]
gi|187611298|sp|A0KU01.1|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3]
Length = 699
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/700 (41%), Positives = 441/700 (63%), Gaps = 12/700 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
FE G +TLETG IAR A+ AV+ M +T VL TV K ++ RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PDI
Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDI 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S IP+ GP+G R+G I G++++NPT+ +L S LNLV A T LM
Sbjct: 128 ISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAGTESAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E+ + + H + ++ +AGK + + +E + +V
Sbjct: 188 VESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEALVAQVKE 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAE + + K +R + + K+AL + L+ + + ++ K+V+R
Sbjct: 248 LAEDGLAQAYQ--IQVKQDRYAQVAVVKAAAKEALLAANPDVDLREVDGLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ+++
Sbjct: 306 GRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKID 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------NFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I + R ++PR+ T+K + + +R +IG GA+ R + EETG I + DGT+ + +
Sbjct: 539 AIGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N + + +++ I E+EVG IY G V + ++GAFV G+ GL+H+S++S E
Sbjct: 599 SNGDATREAIRRIEEITS-EVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
V+ VSD + + Q+++++ + D +G ++LS+K + A
Sbjct: 658 VANVSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEAA 697
>gi|424589892|ref|ZP_18029339.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1037(10)]
gi|408036066|gb|EKG72513.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1037(10)]
Length = 708
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/693 (41%), Positives = 432/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R +A I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDRIQA---ISAEVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|411001050|gb|AFV98779.1| polyribonucleotide nucleotidyltransferase [Candidatus Snodgrassella
sp. TA1_30860]
Length = 728
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/707 (41%), Positives = 434/707 (61%), Gaps = 22/707 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A GAV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 30 FQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLTVDYLERTY 89
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFY+++Q++A V+S D + D DI
Sbjct: 90 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSVDPEIDSDI 149
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+L+ +P+ GPIG R+G + G++++NPT +L+ S L+LV A T + LM
Sbjct: 150 PAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLVVAGTEKAVLM 209
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + +++ + E + KV
Sbjct: 210 VESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVADESLIAKVRE 269
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
LA A I+ F K R LD+ V+ AL EE D + + K V+
Sbjct: 270 LAGATIDEAF--KIKQKQARTAKLDEAWAAVEAALITEETDTLLANQIRGIFKDLEKEVV 327
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L T TLG + Q +
Sbjct: 328 RGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQRDEQII 387
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 388 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVEDFSYTM 447
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VC G ++L++AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 448 RVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGN-------KFAVL 500
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL IL M+
Sbjct: 501 TDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQ 560
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
+ P+ + ++PRL T+K D +R +IG G R + ETG I+++ DGT+T+
Sbjct: 561 EAVKGPQ-ELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITIA 619
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A E +++ I E+EVG +Y+G V + GA V G+ GL+H+S++S
Sbjct: 620 ASTSEAGEAAKRRIEEITA-EVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQIS 678
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV------SPRP 758
H+ V VSD + +GQQ+ ++ + D RG ++LS+KA+ P+P
Sbjct: 679 HDRVKNVSDYLQIGQQVKVKALEIDDRGRVRLSIKALLEKVPQEPKP 725
>gi|409400292|ref|ZP_11250402.1| polynucleotide phosphorylase/polyadenylase [Acidocella sp. MX-AZ02]
gi|409130677|gb|EKN00424.1| polynucleotide phosphorylase/polyadenylase [Acidocella sp. MX-AZ02]
Length = 716
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 300/707 (42%), Positives = 432/707 (61%), Gaps = 15/707 (2%)
Query: 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQ 117
F++E E G + + LETGK+AR A+GAVV +T VL+TV +K +DF PLTV+YQ
Sbjct: 6 FRKEMEWGGKTLILETGKVARQADGAVVASYGDTVVLATVVGAKSAKPGQDFFPLTVNYQ 65
Query: 118 EKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQ 177
EK +A G IP + +REG P E+E LV R+IDRPIRPLFP GF +EVQV+ +VLS D
Sbjct: 66 EKFYAAGRIPGGFFKREGRPTEKETLVSRLIDRPIRPLFPEGFRNEVQVVVNVLSHDLDN 125
Query: 178 DPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTRE 237
DPD++ A SAAL LS IP+ GP+G R+G I G +++NPT E S L+LV A T E
Sbjct: 126 DPDVVGLVAASAALTLSGIPFFGPVGAARVGYINGAYVLNPTTSEREESKLDLVLAGTTE 185
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A E+SE+ + + H ++ I LAE A K+ + +TL+
Sbjct: 186 GVLMVESEASELSEEVMLGAVTFGHQSFQPVIQAIIELAESAAKEPWDLPEESEETKTLK 245
Query: 298 -KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVR 356
+V LA A I + + + + + + K EE + E+ + L KA++
Sbjct: 246 ARVDALARAAITEAYKE-TQKQVRYEKLAAAKKEAAAKLTEEGLNAEAAKGLFKALEA-- 302
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
++R I+ G+R+DGR VRPI E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 303 -DIVRNAILDTGLRIDGRDTKTVRPILSEVGVLPRTHGSALFTRGETQALVVATLGTAQD 361
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++++ G + FMLHY+FPPF + E G+ RRE+GHG LA +A+ +LP + F
Sbjct: 362 EQVVDAIEGEFKEHFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAVHPLLPTKEAF 421
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
PYT+RV SE+ S+GS+SMATVCG S++LMDAG+PL+ VAG+++GL+ E K
Sbjct: 422 PYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLIK-------EDKG 474
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK I +I+ LE A GRL IL
Sbjct: 475 FAVLSDILGDEDHLGDMDFKVAGTEEGITALQMDIKITSITPEIMKIALEQAKGGRLHIL 534
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGT 655
M + I+ R N+P++ T D +R +IG G + R I E+TG ++ + DGT
Sbjct: 535 GEMAKAITGNRDGVSANAPKIVTTSVPKDKIRDVIGTGGKVIRDIVEKTGAKVDIGDDGT 594
Query: 656 LTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSE 715
+ + A + ++ L+ + I+ E EVG IY G V ++GAFV F G + GL+H+SE
Sbjct: 595 VKIAASDDKKIQAALDMIKGIVA-EPEVGVIYNGKVVKTADFGAFVNFLGAKDGLVHISE 653
Query: 716 LSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
L+ V++ +DVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 654 LAQGRVAKTTDVVKQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADI 700
>gi|399907829|ref|ZP_10776381.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. KM-1]
Length = 710
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/702 (42%), Positives = 443/702 (63%), Gaps = 20/702 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MDET VL TV + K +DF PL+V YQE
Sbjct: 5 KKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVARKDTKPGQDFFPLSVHYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 65 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHD 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL +S +P+ GPIG R+G + + +NPT++EL+ S+L++V A T +
Sbjct: 125 PDIAAMLGTSAALAISGVPFNGPIGAARVGFDEEKGYFLNPTVEELASSELDMVVAGTEK 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE 297
LM++ +A E+ E ++ + H E + L +AGK K +++ + +
Sbjct: 185 AVLMVESEAEELLEDEMLGAVLFGHQEMQVAIRAINELVAEAGKPKWDWQPPAENTALKQ 244
Query: 298 KVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL--EEECDEESLQVLPKAVD 353
+++ EA + + TD K R +AL + + + L EEE ++ +V A
Sbjct: 245 AIADAFEAKVGEAYRITD----KMARQDALAALKEQAVEQLAGEEEGKFDADEV-KGAFA 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ KRV+R R++ R+DGR VRP+ E G+LP HGS++F+RG+TQ + TLG
Sbjct: 300 GLEKRVVRSRVVKGEPRIDGRDHKTVRPLAIEVGSLPKTHGSAIFTRGETQAIVIATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ +ESL G RF+LHY+FPP+ + E G G RRE+GHG LA + + A+LP E
Sbjct: 360 LRDAQLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLPDE 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV + +G
Sbjct: 420 ADFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKD---ESG- 475
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ L+ AH+ RL
Sbjct: 476 ---FAVLTDILGDEDHLGDMDFKVAGSAAGVTALQMDIKIEGINEEIMEIALQQAHEARL 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL+ M I R++ N+P +AT+K D + +R +IG GA RKI E+TG I +
Sbjct: 533 HILEQMNEVIGQSRSEVSENAPSMATIKIDPEKIRDVIGKGGATIRKICEDTGASIDLDD 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + A++++ +K ++ V I E E+G +Y+G V + ++GAFV G GL+H
Sbjct: 593 DGTVRIYAEDKAAAKKAIDIV-LSITAEAEIGKLYRGKVVRIADFGAFVNIMPGTDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+S++ E V+ V D ++ G ++ ++ + D R +KL++K +
Sbjct: 652 ISQIVPERVNDVRDFLNEGDEVVVKVLDIDNRNRVKLTIKEI 693
>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
Length = 707
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 10 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 70 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 130 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 190 VESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 249
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 250 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKHLEADVV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 308 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 368 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 600 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 699
>gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum
NCIB 8327]
gi|226702632|sp|B3QM09.1|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum
NCIB 8327]
Length = 732
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 293/723 (40%), Positives = 448/723 (61%), Gaps = 38/723 (5%)
Query: 59 FKEEFEIGS-RLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDS--VRDFLPLTVD 115
K+E ++G ++IT+ETGK+A+ A+G+ V+ +++T VL+TV SSK +DF PL V+
Sbjct: 3 IKKEIDLGQGKVITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQVE 62
Query: 116 YQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDG 175
Y+EK A G P + +REG P E+E+L R+IDR +RPLFP G+Y E Q++ SV+SSD
Sbjct: 63 YREKYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDT 122
Query: 176 KQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACT 235
D D++ A SAA+M+SDIP+ P+ +R+GRI GQFIVNP +EL SDL++ T
Sbjct: 123 INDADVLGGIAASAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDICIGGT 182
Query: 236 REKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQT 295
+ M++ + +EISE ++ ++ H K Q LA + K K+ + ++ +
Sbjct: 183 EDTICMLEGEMKEISEAEMLDAIKFGHEAIKKLCAFQKELAAEVAKPKRAFAPTVAPAEL 242
Query: 296 LEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQD-VKKALE--------------EEC 340
+ + A ++A+ P +K ER + I ++ + K LE E+
Sbjct: 243 VAFIEANCAAELKALAYTP-LAKEERSDRTKAIYKETIAKTLEHFSSITAEEIAANPEKA 301
Query: 341 DEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSR 400
+S ++ + + V K+V+R I+ + R+DGR L++VRPI E G +P HGS+LF+R
Sbjct: 302 LCQSEHMIDECIHDVEKKVMRHMILDDSKRLDGRTLEQVRPISIELGLIPRAHGSALFTR 361
Query: 401 GDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGT 460
G+TQ L T+TLG +AQ +++L KRFMLHY+FPPF + E G+ G RRE+GHG
Sbjct: 362 GETQALVTLTLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGETGRVGGTGRREIGHGN 421
Query: 461 LAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVS 520
LAE+A+ V+P E +FPYTVR+ S+++ S+GS+SMA+VCGG++A MD GIPL++ V+G++
Sbjct: 422 LAERAIKMVMPAEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIA 481
Query: 521 VGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDI 580
+GL+ E D Y +L+DILG EDHLGDMDFK++GTR G+TA Q+DIK G+ I
Sbjct: 482 MGLIKEGD-------RYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHI 534
Query: 581 ICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRK 640
+ LE A KGRL ILD M I R + +PRL +++ D + +IG G R
Sbjct: 535 LETALEQARKGRLHILDVMTEAIPESREDIGKYAPRLTSIQIPVDAIGMVIGKGGETIRS 594
Query: 641 IEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVK-EYG 698
I EETG I++ DGT+T+ + + +E + ++ + EVG IY G V ++ E G
Sbjct: 595 ITEETGAEINIDDDGTVTIACSSPEGTKAAVETIKTLVSKP-EVGTIYMGKVRDIRDELG 653
Query: 699 AFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN-------IKLSL 751
AFVEF GL+H+SE++ E +++VSDV+ G+++ ++ I D+R + LS+
Sbjct: 654 AFVEFLPKTDGLVHISEIARERIAKVSDVLKPGERVKVKLI--DIRKDPRTGKTKFALSI 711
Query: 752 KAV 754
KA+
Sbjct: 712 KAL 714
>gi|397668440|ref|YP_006509977.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
gi|395131851|emb|CCD10144.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
Length = 729
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/713 (40%), Positives = 442/713 (61%), Gaps = 17/713 (2%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK--GDSVRDFLPLTVDYQE 118
+E G+ + LETG++AR A+GAV+ M+ T+VL TV K G+S DF PLTV+YQE
Sbjct: 6 KEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGES-NDFFPLTVNYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P + E L+ R+IDRPIRPLFP F++EVQ++A+VLS + +
Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A SAAL +S +P+ GPIG R+G G +++NP+ E S L+LV A T++
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+SE + + H ++ LA + GK K E+K I +
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLKAR 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
++++A +EA + K +R + LD++ + AL E DE + ++ + +
Sbjct: 245 INDVARNEVEAAYL--IKDKQQRYQRLDELREQTISALLAENDELNADIIANMFGELERS 302
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R RI+ R+DGR VRPI + L HGS LF+RG+TQ + TLG +AQ
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
L+ + G RFMLHY+FPP+ + E G+ RRE+GHG LA++AL+AVLP N+FPY
Sbjct: 363 ILDGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPY 422
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAGV++GL+ E D Y
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDR-------YA 475
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
+LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK +GI +I+ + LE A +GR IL
Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGV 535
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M ++ RT+ +++PR+ T+K D +R +IG GA + + E TG I + D G +
Sbjct: 536 MNNALAEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQ 595
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + ++ +E+ +++ +I EIEVG Y+G V+ + ++GAF+ G+ GLLH+S++
Sbjct: 596 LFSPDKMALEEAQKQIKALIA-EIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQIC 654
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSV 770
+ +V +V+ GQ++ + G D +G +KL K +P+A+ K V + V
Sbjct: 655 ADRTQKVEEVLQEGQEIEVFVAGIDKQGRVKLEWK---DKPQAEAKEVEDAPV 704
>gi|421544131|ref|ZP_15990209.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM140]
gi|421546241|ref|ZP_15992290.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM183]
gi|421548510|ref|ZP_15994535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2781]
gi|421552535|ref|ZP_15998509.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM576]
gi|421560934|ref|ZP_16006787.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2657]
gi|433464740|ref|ZP_20422225.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM422]
gi|433490108|ref|ZP_20447238.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM418]
gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha153]
gi|402323976|gb|EJU59414.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM183]
gi|402324243|gb|EJU59679.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM140]
gi|402326171|gb|EJU61576.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2781]
gi|402331167|gb|EJU66508.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM576]
gi|402339414|gb|EJU74630.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2657]
gi|432204227|gb|ELK60272.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM422]
gi|432228683|gb|ELK84381.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM418]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 433/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
tropicalis]
gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
tropicalis]
Length = 789
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/732 (40%), Positives = 441/732 (60%), Gaps = 25/732 (3%)
Query: 39 CEPAPPTPAPSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTV 98
C P TP+ A V ++G+R + + +GK+ARFA+G V+ + ++ V+ T
Sbjct: 37 CYRIPLTPSSREASGAV------TVDLGARKLEISSGKLARFADGCAVVKLGDSSVMVTA 90
Query: 99 TSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPA 158
S S F+PL VDY+EK A G IP ++RRE E+L RIIDR +RPLFPA
Sbjct: 91 VSRTKPSPSQFMPLVVDYREKSAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPA 150
Query: 159 GFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNP 218
G+++E Q++ ++L+ DG PD++A N SAAL LSDIPW GP+G +R+G + G+FI+NP
Sbjct: 151 GYFYETQILCNLLAVDGVNKPDVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINP 210
Query: 219 TMDELSLSDLNLVYA-CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAE 277
T E+S S LNLV A + + +M++ A + ++D ++L + + ++ +LA+
Sbjct: 211 TRKEMSSSLLNLVIAGGVQSQIVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAK 270
Query: 278 KAGKQKKEY-KLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL 336
+ GK+K+ K+ +E A I AVF+D ++ K R EA++KI + ++ L
Sbjct: 271 EHGKEKRTIQKIFQAPVDIVESARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETL 330
Query: 337 EEEC-DEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGS 395
E D E +++ +A V K V R I+ E R DGR L +R I CE LHGS
Sbjct: 331 RERFPDAEPFEIM-EAFSAVSKDVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGS 389
Query: 396 SLFSRGDTQVLCTVTLGAPAEAQRLE----SLVGPPTKRFMLHYSFPPFCINEVGKRVGL 451
+LF RG TQVLCTVT + + + + +L G K FMLHY FPP+ NE+GK G+
Sbjct: 390 ALFQRGQTQVLCTVTYDSIESSMKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGI 449
Query: 452 NRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIP 511
NRRE+GHG LAEKAL V+P DFP+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P
Sbjct: 450 NRRELGHGALAEKALRPVIP--KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVP 507
Query: 512 LQEHVAGVSVGLVSEVDP-STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLD 570
+ VAGV++GL+++ P GEI+DYR+LTDILG+ED+ GDMDFK+AGT G+TA+Q D
Sbjct: 508 ISAAVAGVAIGLITKYSPDKNGEIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQAD 567
Query: 571 IKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRL 630
IK G+PL I+ E ++ A + +I+ M + IS PR NSP T++ R
Sbjct: 568 IKIPGLPLKIVMEAIQQATVAKKEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRF 627
Query: 631 IGPLGALKRKIEEETGGRIS-VSDGTLTVVAKNRSVMEKVLEKVDFIIG----REIEVGG 685
+GP G +KI+ ETG +S + + T +V A S M + E ++ I +++E G
Sbjct: 628 VGPGGYNLKKIQAETGVTVSQIDEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGA 687
Query: 686 IYKGVVTSVKEYGAFVE-FNGGQQGLLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD- 742
+Y +T +++ G V+ + LLH S+L H + S + + +GQQ+ ++ G+D
Sbjct: 688 VYTATITEIRDIGVMVKLYPNMTPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDP 747
Query: 743 VRGNIKLSLKAV 754
G ++LS K +
Sbjct: 748 TDGRMRLSRKVL 759
>gi|374311960|ref|YP_005058390.1| polyribonucleotide nucleotidyltransferase [Granulicella mallensis
MP5ACTX8]
gi|358753970|gb|AEU37360.1| polyribonucleotide nucleotidyltransferase [Granulicella mallensis
MP5ACTX8]
Length = 818
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 303/693 (43%), Positives = 426/693 (61%), Gaps = 16/693 (2%)
Query: 66 GSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLTVDYQEKQFAQG 124
G + I ETG+IA+ A+GA + VL+T V S DF PLTV+Y+E +A G
Sbjct: 11 GGKQIKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVEYREFTYAGG 70
Query: 125 VIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAA 184
IP +++REG P E+E+L R IDRPIRPLFP F +E QV+A V S+D + DPD++
Sbjct: 71 RIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDVLGI 130
Query: 185 NATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDV 244
N S AL LSDIP+ GP+G +RIG I Q+IVNPT E S LN++ T++ +M++
Sbjct: 131 NGASCALALSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKLNIMVVGTKDGIVMVES 190
Query: 245 QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-LSMISEQTLEKVSNLA 303
A+EI E+ + + AH E K + L +AGK K+ L +E + +
Sbjct: 191 GAKEIPEEVVVGAIEFAHEEIKKIVAGIEDLVSRAGKTKRTVTPLENDTEYAAALKAKVG 250
Query: 304 EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKR 363
E+ +A+ T Y KFE + +I +KK L E D + + L K + +R+ + R++
Sbjct: 251 ESLADALNTK-KYPKFESYAKVKEIKDALKKDLPE-GDAAAAKKLGKYFEGLRETIFREQ 308
Query: 364 IIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL 423
++ + +R D R DE+R I E+G LP +HGS+LF+RG+TQ L + TLG +AQR+ES
Sbjct: 309 VLNDRIRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESY 368
Query: 424 VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVN 483
G ++FMLHY+FPPF + EVG+ G+ RRE+GHG LA +A+ AVLP E++ PYT+RV
Sbjct: 369 EGEQKRKFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPGEDESPYTLRVV 428
Query: 484 SEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDI 543
S+++ S+GS+SMATVCG S++LM AGIPL+ VAGV++GLV E D Y ILTDI
Sbjct: 429 SDILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGD-------KYAILTDI 481
Query: 544 LGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREI 603
G EDH GDMDFK+AGTR G+TA+Q+DIK GI I+ E LE A GRL +LD M+ I
Sbjct: 482 AGAEDHYGDMDFKVAGTRNGITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDAII 541
Query: 604 SAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVAKN 662
S + +PR+ T++ D +R LIGP G + R I + TG +I V D G + V + +
Sbjct: 542 SKANEEKSAFAPRIHTIQIPTDKIRDLIGPGGKVIRGIVDATGVKIDVDDTGRVNVASSD 601
Query: 663 RSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS 722
+ K ++ + I EVG Y G V + E+GAFVE G GLLHVSE++ V
Sbjct: 602 AEGLAKAIQMISDITAVP-EVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRVK 660
Query: 723 RVSDVVSVGQQLSLRCIGQDVRGN-IKLSLKAV 754
V D + G Q+ ++ + + GN IKLS KAV
Sbjct: 661 DVKDELRDGDQVLVKVL--SIEGNRIKLSRKAV 691
>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
020-06]
gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
lactamica 020-06]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|438002358|ref|YP_007272101.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|432179152|emb|CCP26125.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 700
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 303/692 (43%), Positives = 431/692 (62%), Gaps = 15/692 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEKQF 121
EIG R + +ETGK+A+ ANG+V++ ++T +L T T+SK + V DFLPLT+DY+EK +
Sbjct: 7 EIGGRKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGV-DFLPLTIDYEEKLY 65
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP +++REG P E+ +L R+IDRP+RPLFP F ++VQV+A+VLS D PDI
Sbjct: 66 AVGKIPGGFIKREGKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTPDI 125
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
+A N S AL +SDIP+ GP+G + +G I G++++NPT+ E S L LV A T+E LM
Sbjct: 126 VAINGASCALCISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSRLRLVVAGTKEAVLM 185
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ A E+SE ++ + + H E K + Q + + GK K E I ++ + V
Sbjct: 186 VEAGADEVSENEMLSAILYGHEEIKKIIAFQEEIINEIGKTKMEITAEEIDDELEKSVRE 245
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
A I Y K ER +DKI +D ++ + Q+ D +++ V R
Sbjct: 246 FATEDILKAIR--IYDKQEREAYIDKINEDTLLHFQDIYPDTEKQITDVLYDILKEEV-R 302
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
K I EG+R DGR +++RPI CE G LP HGS LF+RG TQVL TLGA + Q L+
Sbjct: 303 KMISYEGIRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILD 362
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
L +KR+M HY+FPP+ E G RRE+GHG LAE+AL ++P E DFPYT+R
Sbjct: 363 GLGIEESKRYMHHYNFPPYSTGETKVIRGPGRREIGHGALAERALEPMIPSEEDFPYTIR 422
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ SEV++S+GS+SMA+VCG ++ALMDAG+P++ V+GV++GL+ + D T ILT
Sbjct: 423 LVSEVLSSNGSSSMASVCGSTLALMDAGVPIKAPVSGVAMGLIKQGDKVT-------ILT 475
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI G+ED LGDMDFK+AGT+ G+TAIQ+DIK GI DI+ L+ A +GRL I+D M
Sbjct: 476 DIQGMEDFLGDMDFKVAGTKNGITAIQMDIKIKGIDEDILKSALQQAREGRLFIMDKMLS 535
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
I PR + +PR+ T+ D D +R +IGP G KI ET +I + DG + + A
Sbjct: 536 VIPEPRKELSAYAPRIFTITVDPDKIRDIIGPGGKTINKIIAETNTKIDIEDDGKVYISA 595
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
S K +E +D I +++EVG IY G + +GAF E G++GL+H+S+LS E
Sbjct: 596 PEESAGIKAMEIIDKIT-QDVEVGRIYMGKIMRTTNFGAFAEILPGKEGLIHISKLSKER 654
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RV DVV VG ++ ++ D +G I LS K
Sbjct: 655 VKRVEDVVKVGDEILVKVTDIDKQGRINLSHK 686
>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
OXCC13]
gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
OXCC13]
Length = 713
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 282/700 (40%), Positives = 441/700 (63%), Gaps = 23/700 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQEK 119
F+ G + +T+ETG+IAR A+GAV++ +D+T VL+TV + D V+ DF PLTVDY EK
Sbjct: 9 FQYGQQTVTMETGEIARQASGAVMVSVDDTVVLATVVAK--DDVKPGQDFFPLTVDYIEK 66
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP ++ +REG P E+E L R+IDRPIRPLFP G+++EVQV+ VLS + + DP
Sbjct: 67 SYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSVNPEVDP 126
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
DI + A SAAL +S IP+ GP+G R+G I GQ+++NPT +L LS ++LV A T +
Sbjct: 127 DIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSKMDLVVAGTEQAV 186
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A E+ E + + H + ++ L GK + E+ +E+ + V
Sbjct: 187 LMVESEAEELPEDIMLGAVVFGHEQMKVVIDAIDELVRDGGKPEVEWAPPAKNEELIAAV 246
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDT----- 354
+ +AE + + K R L I +V K L E ++ + P +V+
Sbjct: 247 TRIAEPELRKAYQ--IRQKQARSTELRHIYDNVSKTLAAEAQDKGVSA-PDSVEVGNIMF 303
Query: 355 -VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ +++R +I+ R+DGR VRPI +G LP HGS+LF+RG+TQ L TLG
Sbjct: 304 DLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGT 363
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q++++L+G + FM+HY+ PPF E G+ RRE+GHG LA++AL+A LP +
Sbjct: 364 SRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIACLPSQ 423
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
+F Y++R+ SE+M S+GS+SMA+VCGGS+ALMDAG+P++ HVAG+++GL+ E +
Sbjct: 424 EEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKNHVAGIAMGLIKEGN----- 478
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
+ +LTDILG EDHLGDMDFK+AGT GV A+Q+DIK GI +I+ L A +GR+
Sbjct: 479 --KFAVLTDILGDEDHLGDMDFKVAGTANGVNALQMDIKIQGITKEIMQVALAQAREGRM 536
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS- 652
IL M+ + +T+ +PRL T++ + + +R +IG GA+ R + EETG +I ++
Sbjct: 537 HILSKMQEAMPQFKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRGLTEETGAQIDITD 596
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DG +T+ + + + ++ +++ + +EVG IY+G V + ++GA V+ G+ GLLH
Sbjct: 597 DGVVTIASVDAAAGQEAKRRIEELTA-SVEVGKIYEGTVLKLLDFGAIVQILPGKDGLLH 655
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+S+++ E V+ V+D + GQ + ++ + D RG IKLS+K
Sbjct: 656 ISQIASERVNAVTDYLEEGQAVRVKVLETDDRGRIKLSMK 695
>gi|424776542|ref|ZP_18203523.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes sp.
HPC1271]
gi|422888362|gb|EKU30751.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes sp.
HPC1271]
Length = 712
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/703 (40%), Positives = 446/703 (63%), Gaps = 25/703 (3%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGDSVRDFLPLTVDYQEKQF 121
F+ G + LETG+IAR A+GAV++ +++T VL+TV S+ + +DF PLTVDY EK +
Sbjct: 9 FQYGEHTVVLETGEIARQASGAVLVSIEDTVVLATVVGKSEAKAGQDFFPLTVDYVEKTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP + +REG ERE+L+ R+IDRP+RPLFP GFY+EVQV+ +S + + DPDI
Sbjct: 69 SAGKIPGGFFKREGRQSEREILISRLIDRPLRPLFPEGFYNEVQVIIHTVSVNPEIDPDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL +S IP+ GP+G R+G I GQ+++NP+ +L S L+LV A T + LM
Sbjct: 129 AAMIGASAALAISGIPFNGPVGAARVGYIDGQYVLNPSATQLKSSALDLVVAGTEQAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++SE+ + G+ AH + + L E+AGK + +++ + ++E L V+
Sbjct: 189 VESEAKQLSEEVMLGGVVFAHEQMQAAINCIHELVEEAGKPEWDWQPAAVNESLLAAVTA 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEEC-----DEESLQVLPKAVDTVR 356
AE + + + K R E + + VK+ ++ + D+ + + + +
Sbjct: 249 AAEEGLTQAYQ--TREKQARTEQVRAVYAQVKETVKAQAEAAGQDQPDMVAVENMMFDLE 306
Query: 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAE 416
+++R RI++ R+DGR VRPI G LP HGS+LF+RG+TQ L TLG +
Sbjct: 307 SKIVRSRILSGESRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVTTLGTKQD 366
Query: 417 AQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDF 476
Q ++S++G RFM+HY+ PPF E G+ RRE+GHG LA++AL +LP DF
Sbjct: 367 EQIIDSIMGEYRDRFMMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRALTPLLPAAEDF 426
Query: 477 PYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKD 536
Y++RV SE+ S+GS+SMA+VCGGS+++MDAG+P+Q+HVAGV++GL+ E +
Sbjct: 427 QYSIRVVSEITESNGSSSMASVCGGSLSMMDAGVPVQDHVAGVAMGLIKEGN-------K 479
Query: 537 YRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596
+ +LTDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L AH+GR+ IL
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAHEGRMHIL 539
Query: 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGT 655
M+ I RT+ +PR+ T+K + + +R +IG GA R + EETG +I +S DGT
Sbjct: 540 GKMKESIDGSRTEMSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGT 599
Query: 656 LTVVA----KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
+T+ + K R ++ E + E+EVG Y+G V + ++GA V+ G+ GLL
Sbjct: 600 ITIASADLDKAREAERRIKE-----LTAEVEVGQEYEGPVMRLLDFGAIVQVLPGRDGLL 654
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SE+++ ++ ++DV+ VGQ + ++ I D +G ++LS+KA+
Sbjct: 655 HISEIANYRIANINDVLKVGQVVKVKVIEADEKGRLRLSIKAI 697
>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
YJ016]
gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
Length = 725
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/700 (41%), Positives = 431/700 (61%), Gaps = 16/700 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG IAR A AV++ MD+T V +V K ++V +DF PLTV+YQE+
Sbjct: 27 FQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKK-EAVPGQDFFPLTVNYQERT 85
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PD
Sbjct: 86 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPD 145
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I TSAAL +S IP+ GPIG R+G I GQ ++NP+ EL+ S L+LV A T L
Sbjct: 146 IPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVVAGTESAVL 205
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+++ + + H + ++ A + + + EKV+
Sbjct: 206 MVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEANTALNEKVA 265
Query: 301 NLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+LAEA +EA ++++R + +I +V + E E + + + K V
Sbjct: 266 DLAEAKLVEAYKITEKMARYDR---IHEIAAEVNAVILAEDPEADAKEIHTIFHDLEKTV 322
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ IIA R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ
Sbjct: 323 VRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQI 382
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FPYT
Sbjct: 383 IDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEFPYT 442
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +
Sbjct: 443 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGD-------DFVV 495
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL M
Sbjct: 496 LSDILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 555
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
++ IS R +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 556 DQAISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKI 615
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++
Sbjct: 616 AATEGAAAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 674
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ V +VSD ++ GQ++ ++ + D +G ++LS+K +P
Sbjct: 675 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 714
>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase [Neisseria meningitidis Z2491]
gi|385337712|ref|YP_005891585.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
gi|433475367|ref|ZP_20432708.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
88050]
gi|433479519|ref|ZP_20436813.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63041]
gi|433515327|ref|ZP_20472099.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2004090]
gi|433517263|ref|ZP_20474012.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
96023]
gi|433519483|ref|ZP_20476204.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
65014]
gi|433523680|ref|ZP_20480345.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97020]
gi|433527872|ref|ZP_20484483.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3652]
gi|433530046|ref|ZP_20486639.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3642]
gi|433532304|ref|ZP_20488870.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2007056]
gi|433534154|ref|ZP_20490699.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2001212]
gi|433540616|ref|ZP_20497071.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63006]
gi|187610303|sp|A1IR09.1|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis Z2491]
gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
gi|432211185|gb|ELK67140.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
88050]
gi|432217322|gb|ELK73191.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63041]
gi|432253915|gb|ELL09251.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2004090]
gi|432254272|gb|ELL09607.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
96023]
gi|432255474|gb|ELL10803.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
65014]
gi|432260579|gb|ELL15837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97020]
gi|432266179|gb|ELL21367.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3652]
gi|432267974|gb|ELL23146.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3642]
gi|432268249|gb|ELL23420.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2007056]
gi|432272664|gb|ELL27771.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2001212]
gi|432277631|gb|ELL32677.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63006]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|385339734|ref|YP_005893606.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
gi|416205686|ref|ZP_11620634.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|433466908|ref|ZP_20424365.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
87255]
gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
gi|432203484|gb|ELK59535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
87255]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|419835567|ref|ZP_14359012.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46B1]
gi|421341996|ref|ZP_15792403.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43B1]
gi|421353455|ref|ZP_15803788.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-45]
gi|422306054|ref|ZP_16393240.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1035(8)]
gi|423733930|ref|ZP_17707146.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-41B1]
gi|424008215|ref|ZP_17751165.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-44C1]
gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
gi|395945499|gb|EJH56164.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43B1]
gi|395954802|gb|EJH65411.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-45]
gi|408627437|gb|EKL00245.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1035(8)]
gi|408631700|gb|EKL04228.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-41B1]
gi|408858980|gb|EKL98650.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46B1]
gi|408866085|gb|EKM05474.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-44C1]
Length = 708
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/693 (41%), Positives = 432/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + +I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHEISSEVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|258543487|ref|YP_003188920.1| polynucleotide phosphorylase/polyadenylase [Acetobacter
pasteurianus IFO 3283-01]
gi|384043407|ref|YP_005482151.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-12]
gi|384051924|ref|YP_005478987.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-03]
gi|384055031|ref|YP_005488125.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-07]
gi|384058266|ref|YP_005490933.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-22]
gi|384060907|ref|YP_005500035.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-26]
gi|384064199|ref|YP_005484841.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-32]
gi|384120210|ref|YP_005502834.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849639|ref|ZP_16282616.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus NBRC 101655]
gi|421853421|ref|ZP_16286095.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|256634565|dbj|BAI00541.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-01]
gi|256637623|dbj|BAI03592.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-03]
gi|256640675|dbj|BAI06637.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-07]
gi|256643732|dbj|BAI09687.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-22]
gi|256646787|dbj|BAI12735.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-26]
gi|256649840|dbj|BAI15781.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-32]
gi|256652828|dbj|BAI18762.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655884|dbj|BAI21811.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus IFO 3283-12]
gi|371459583|dbj|GAB27819.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus NBRC 101655]
gi|371478356|dbj|GAB31298.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 716
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 305/718 (42%), Positives = 436/718 (60%), Gaps = 29/718 (4%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLT 113
+ F++E E G R + LETGK+AR A+GAV++ ET VL T +K +DF PLT
Sbjct: 1 MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKDVKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP + +REG P E E LV R+IDRP+RPLFP GF +EVQV+A+VL+
Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DP I A SAAL LS IP+ GP+G R+G G FI+NPT +++ SDL LV A
Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ--------KKE 285
T E LM++ +A E+SE+ + + H L+ I LAE A K+ K+E
Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240
Query: 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+L E+ K+ +A+A+ E K R E L + + + L DE +
Sbjct: 241 IQLRKQVEKAGRKL--IADAYKEK-------QKQVRYEKLKAAREAIIEKLT--ADELDV 289
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ + V+R ++ G R+DGR L VRPI E G LP +HGSSLF+RG+TQ
Sbjct: 290 AAAKPMIKDLEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQA 349
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L TLG + Q +++L G FMLHY+FPPF + E G+ RRE+GHG LA +A
Sbjct: 350 LVVTTLGTGQDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRA 409
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ ++P +FPYTVRV SE+ S+GS+SMATVCGGS+ALMDAG+PL+ VAG+++GL+
Sbjct: 410 IHPLMPSRKEFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIK 469
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E D D+ +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+ L
Sbjct: 470 EGD-------DFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIAL 522
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A GR+ IL M + ++ RT +P++ T+K + +R +IG G + R+I E +
Sbjct: 523 GQARDGRMHILGEMSKALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYS 582
Query: 646 GGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G ++ + DGT+T+ A + +K +++++ I+ E E+G IY G V ++GAFV F
Sbjct: 583 GAKVDIGDDGTITIAAASDDQAQKAIDRINGIVA-EPELGRIYDGKVVKTADFGAFVNFL 641
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
G + GL+H+SEL+ V + +DVV G + ++ IG D RG +KLS++ V AD+
Sbjct: 642 GARDGLVHISELAQGRVGKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699
>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 436/701 (62%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A +SE+ + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ + + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL IL+ M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEEITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V VSD + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAP 698
>gi|442611760|ref|ZP_21026463.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441746505|emb|CCQ12525.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/717 (41%), Positives = 447/717 (62%), Gaps = 20/717 (2%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTV 114
++ +EF++G +TLETG IAR A+GAV+ + +T VL TV + + +DF PLTV
Sbjct: 1 MQAIIKEFQLGRHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAAPGQDFFPLTV 60
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQE+ +A G IP +++REG P + E L+ R+IDRPIRPLFP GF +EVQV+A+V+S +
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPSDGETLIARLIDRPIRPLFPDGFVNEVQVIATVVSVN 120
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
+ PDI+A TSAAL +S IP+ GP+G R+G + GQ+++NPT+ EL S L+LV A
Sbjct: 121 PEIQPDIVAMIGTSAALAVSGIPFNGPLGAARVGYVDGQYVLNPTLKELEESKLDLVVAG 180
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
T LM++ +A +SE + + H +A + AGK +
Sbjct: 181 TENAVLMVESEANVLSEDIMLGAVVYGHEQAQSIITAVNEFKAMAGKPNWSWSAPEKDVS 240
Query: 295 TLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDE-ESL--QVLP 349
EKV ++ + + TD K R +AL + + LE + E ESL Q +
Sbjct: 241 FAEKVESIVGEKVGEAYRITD----KVARKDALSAAKELLVATLEADLAEGESLDLQEVS 296
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
K ++ K+++R RIIA R+DGR D VR + +G LP HGS++F+RG+TQ L T
Sbjct: 297 KQFGSLEKKIVRSRIIAGEKRIDGRDTDMVRALDVMTGVLPRTHGSAIFTRGETQALVTA 356
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG ++Q ++ LVG FM+HY+FPPF + EVG RRE+GHG LA++ + AV
Sbjct: 357 TLGTERDSQLIDDLVGTQKHHFMMHYNFPPFSVGEVGFVGSPKRREIGHGNLAKRGVQAV 416
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
+P +FPY++RV SE+ S+GS+SMA+VCG S+ALM+AG+P++ VAG+++GLV E
Sbjct: 417 MPTLTEFPYSIRVVSEITESNGSSSMASVCGASLALMNAGVPIKASVAGIAMGLVKE--- 473
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
GE D+ +L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L+ A
Sbjct: 474 --GE--DFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITKEIMQIALKQAK 529
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
RL IL M+ I++P + +PR+ T+ + +IG GA R++ EETG I
Sbjct: 530 AARLHILGVMDEAIASPAQELSEFAPRIYTMNIPPKKIAEVIGKGGATIRQLTEETGTTI 589
Query: 650 SV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQ 708
+ DGT+ + A + ++ + +++ + E+EVG +Y+G V + ++GAFV G+
Sbjct: 590 EIEDDGTVKIAATDGLSAKEAIRRIEALTA-ELEVGTVYQGKVVRIVDFGAFVNVLPGKD 648
Query: 709 GLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEADVKG 764
GL+H+S++S+E V+ VSD ++VGQ+++++ + D +G ++LS+K A PE KG
Sbjct: 649 GLVHISQISNERVTNVSDHLTVGQEVTVKVLEVDRQGRVRLSMKEAGESAPEDAPKG 705
>gi|421562983|ref|ZP_16008805.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2795]
gi|421906555|ref|ZP_16336448.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha704]
gi|393292303|emb|CCI72388.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha704]
gi|402341690|gb|EJU76863.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2795]
Length = 706
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 434/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G I G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNEELVAKVRE 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN-------KFAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
Length = 709
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/693 (41%), Positives = 431/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHAISAEVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|422921872|ref|ZP_16955077.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BJG-01]
gi|341647489|gb|EGS71567.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BJG-01]
Length = 709
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/693 (41%), Positives = 431/693 (62%), Gaps = 14/693 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + ++ A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA ++++R + I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYDR---IHAISAEVTAALLAENEALDTKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P +FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K + ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V +VSD ++ GQ++ ++ + D +G ++LS+K
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
FAM18]
gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis FAM18]
Length = 711
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/712 (41%), Positives = 437/712 (61%), Gaps = 16/712 (2%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFL 110
GT + + F+ G++ +TLETG+IAR A AV + M +T VL VT++K +DF
Sbjct: 3 GTIMFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFF 62
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASV 170
PLTVDY E+ +A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V
Sbjct: 63 PLTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMV 122
Query: 171 LSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNL 230
+S D + D DI A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+L
Sbjct: 123 VSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDL 182
Query: 231 VYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM 290
V A T + LM++ +A+ + E + + H + + A++ + ++K
Sbjct: 183 VVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPE 242
Query: 291 ISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLP 349
+E+ + KV +A I+ F K R LD+ VK+AL EE D + +
Sbjct: 243 TNEELVAKVRGIAGETIKEAF--KIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIK 300
Query: 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTV 409
+ V+R +I+ R+DGR VRP+ ++ LP HGS+LF+RG+TQ L
Sbjct: 301 GIFKHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA 360
Query: 410 TLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV 469
TLG + Q +++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAV
Sbjct: 361 TLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAV 420
Query: 470 LPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDP 529
LP DF YT+RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E +
Sbjct: 421 LPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN- 479
Query: 530 STGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAH 589
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A
Sbjct: 480 ------KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAK 533
Query: 590 KGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI 649
+ RL ILD M+ ++ P+ + ++PRL T+K + D +R +IG G R I ETG I
Sbjct: 534 EARLHILDQMKAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEI 592
Query: 650 SVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGG 706
+++ DGT+T+ A + + ++++ I E+EVG +Y+G V + GA V G
Sbjct: 593 NIAEDGTITIAATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPG 651
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ GL+H+S+++HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 652 KDGLVHISQIAHERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 703
>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase [Vibrio vulnificus CMCP6]
gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
MO6-24/O]
gi|81448563|sp|Q8DBU9.1|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611443|sp|Q7MI20.2|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
MO6-24/O]
Length = 708
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/700 (41%), Positives = 431/700 (61%), Gaps = 16/700 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV--RDFLPLTVDYQEKQ 120
F+ G+ +TLETG IAR A AV++ MD+T V +V K ++V +DF PLTV+YQE+
Sbjct: 10 FQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKK-EAVPGQDFFPLTVNYQERT 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PD
Sbjct: 69 YAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I TSAAL +S IP+ GPIG R+G I GQ ++NP+ EL+ S L+LV A T L
Sbjct: 129 IPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVVAGTESAVL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A ++E+++ + + H + ++ A + + + EKV+
Sbjct: 189 MVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEANTALNEKVA 248
Query: 301 NLAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
+LAEA +EA ++++R + +I +V + E E + + + K V
Sbjct: 249 DLAEAKLVEAYKITEKMARYDR---IHEIAAEVNAVILAEDPEADAKEIHTIFHDLEKTV 305
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ IIA R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ
Sbjct: 306 VRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQI 365
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FPYT
Sbjct: 366 IDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEFPYT 425
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +
Sbjct: 426 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGD-------DFVV 478
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A R IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
++ IS R +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 539 DQAISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKI 598
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++
Sbjct: 599 AATEGAAAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
+ V +VSD ++ GQ++ ++ + D +G ++LS+K +P
Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 697
>gi|421860637|ref|ZP_16292743.1| polyribonucleotide nucleotidyltransferase [Paenibacillus popilliae
ATCC 14706]
gi|410829823|dbj|GAC43180.1| polyribonucleotide nucleotidyltransferase [Paenibacillus popilliae
ATCC 14706]
Length = 734
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/720 (39%), Positives = 443/720 (61%), Gaps = 19/720 (2%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQF 121
E E+G R + LETG++A+ ANGAV + +T VL TVT+SK DF PLTV+Y+E+ +
Sbjct: 5 EMELGGRPLVLETGRLAKQANGAVKVQYGDTVVLCTVTASKEPKDLDFFPLTVNYEERLY 64
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
+ G IP +++REG P E+ +L R+IDRPIRPLFP GF ++VQ++ V+S D P I
Sbjct: 65 SVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNDVQIVDLVMSVDQDCSPGI 124
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A TSAAL +SD+P+ GPIG + +GRI GQFI+NPT+++ +D+++ A T++ +M
Sbjct: 125 AAMIGTSAALSISDVPFNGPIGGVIVGRIDGQFIINPTVEQEEKTDIHVTVAGTKDAIMM 184
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A E+ E+ + + H E K ++ R AG K E KL + V
Sbjct: 185 VEAEANEVPEEVMLEAIMFGHEEIRKIVDVIERFTVTAGTAKMEVKLHAVDADVNAAVRA 244
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKAVDTVRKRV 359
A+ + P K R +A+D I Q+ K E + E + + + + + + K
Sbjct: 245 FAQDRLVEAIRIP--EKHARQDAIDVINQEALKHFEAQYIESPDRMDDVKETLYDIVKEE 302
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R+ I E VR DGR+LDE+RPI C++ LP HGS LF+RG TQ L TLGA + Q
Sbjct: 303 VRRLITHEKVRPDGRKLDEIRPIECDTSLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 362
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
L+ + +KRFM HY+FPPF + E RRE+GHG L E+AL V+PPE+DFPYT
Sbjct: 363 LDGISLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESDFPYT 422
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GL+ + GE + I
Sbjct: 423 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKD-----GE--HFSI 475
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DI G+EDHLGDMDFK+AGT GVTAIQ+DIK GI I+ + L A +GR+ ILD M
Sbjct: 476 LSDIQGMEDHLGDMDFKVAGTSEGVTAIQMDIKIDGIDRSILTQALAQAREGRMFILDKM 535
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
+ I PR +P++ ++ + D +R +IG G + KI +ETG +I + +G + +
Sbjct: 536 LQVIDMPRATLSPYAPKILIMQINPDKIRDVIGAGGKVVNKIIDETGVKIDIEQNGRIFI 595
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
+ N + + ++ I+ +E+ VG +Y G V ++++GAFVE G++GL+H+S+++
Sbjct: 596 ASPNEESNIRARDMIEAIV-KEVVVGEVYTGTVKRIEKFGAFVEILPGKEGLVHISQMAA 654
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATD 778
E + +V DV S+G ++ ++ + D +G I LS + + + EG+ P + A+D
Sbjct: 655 ERIVKVEDVASIGDKIEVKVVEIDQQGRINLSRRVLLEPTQP------EGAAPADGSASD 708
>gi|407699976|ref|YP_006824763.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Black Sea 11']
gi|407249123|gb|AFT78308.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Black Sea 11']
Length = 724
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/712 (40%), Positives = 435/712 (61%), Gaps = 14/712 (1%)
Query: 54 KVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPL 112
+++ + F+ G +TLETG IAR A AV+ MD+T VL TV K + +DF PL
Sbjct: 20 QIVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPL 79
Query: 113 TVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLS 172
TV+YQEK +A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S
Sbjct: 80 TVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMS 139
Query: 173 SDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVY 232
++ DI++ TSAAL +S IP+ GPIG R+G G++I+N +E + S+L+LV
Sbjct: 140 ANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYSNGEYILNTRAEEQAESELDLVV 199
Query: 233 ACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292
A T LM++ +A +SE + + H + + A + G +K ++ +
Sbjct: 200 AGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDWTPEAEN 259
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
+KV LAEA + A + K ER +A+ + A+ E + + + + +
Sbjct: 260 TALKDKVKALAEAEMTAAYQ--ISDKLERKDAVTAATEKALAAIIAENETQDQKEVLDLL 317
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ V+R RI++ R+DGR +R + +G LP HGS+LF+RG+TQ L TLG
Sbjct: 318 HELESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLG 377
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+AQ ++ L G RFMLHY+FPP+C+ E G RRE+GHG LA++ + AV+P
Sbjct: 378 TERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPS 437
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPY VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV D
Sbjct: 438 EEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDD---- 493
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
++ +L+DILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L+ A + R
Sbjct: 494 ---NFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEAR 550
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M+ I R + +PR+ T+K D D +R +IG GA+ R+I EE+ I +
Sbjct: 551 LHILKVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIE 610
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A R+ + + K++ + EIEVG Y G +T + ++GAFVE G++GL+
Sbjct: 611 DDGTIKIFATERAKADIAISKIEQVTA-EIEVGKTYNGKITRIVDFGAFVEVLPGKEGLV 669
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV--SPRPEAD 761
H+S+++HE V++V+D + GQ + ++ + D + ++LS+K + P P++D
Sbjct: 670 HISQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSIKELLEKPAPKSD 721
>gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial [Callithrix jacchus]
Length = 784
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 288/708 (40%), Positives = 429/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ TV S S F+PL VDY++K A
Sbjct: 50 DLGTRKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE ++E+L R+IDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D ++ + ++ +L ++ G K+ KL S + ++
Sbjct: 230 EASAENILQQDFCHAIKFGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVKHAHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
L + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LTMEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEADPFEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R + CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIDDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFK+AGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAVQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T++ + +GP G +K++ ETG +S V + T
Sbjct: 588 IMNKTISKPRASRKENGPIVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTVSQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|355565702|gb|EHH22131.1| hypothetical protein EGK_05339 [Macaca mulatta]
Length = 783
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/708 (40%), Positives = 431/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G+R + + +GK+ARFA+G+ V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP +RRE ++E+L RIIDR IRPLFPAG++++ QV+ ++L+ DG +PD++A
Sbjct: 110 GRIPTNPLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+++VNPT E+S S LNLV A + + +M+
Sbjct: 170 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ KL + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPLPEIVKHTHK 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LA + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 LAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE+GK GLNRRE+GHG+LAEKAL V+P DFP
Sbjct: 410 QVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGSLAEKALYPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMD+G+P+ VAGV++GLV++ DP GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK GIP+ I+ E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPMKIVMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS +T N P + T++ + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKSQTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+V A S M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SVFAPTPSAMH---EARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH ++L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|416172731|ref|ZP_11608808.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
Length = 706
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 433/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|402852109|ref|ZP_10900205.1| Polyribonucleotide nucleotidyltransferase [Rhodovulum sp. PH10]
gi|402497625|gb|EJW09441.1| Polyribonucleotide nucleotidyltransferase [Rhodovulum sp. PH10]
Length = 715
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/703 (42%), Positives = 438/703 (62%), Gaps = 27/703 (3%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR---DFLPLTVDYQE 118
E + R + LETG+IAR A+GAV+ ET VL+T + K + R DF+PLTV+YQE
Sbjct: 2 EIDWAGRKLVLETGRIARQADGAVLATYGETTVLATAVAEK--TPRPGIDFMPLTVNYQE 59
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E LV R+IDRPIRPLF G+ ++ Q++ + LS D + D
Sbjct: 60 KTYAAGRIPGGFFKREGRPSEKETLVSRLIDRPIRPLFANGWRNDTQIIVTTLSHDLEND 119
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL +S +P+ GP+G R+ I +F++NP +DE++ S L+LV A T++
Sbjct: 120 PDIVAMVAASAALTISGLPFMGPVGAARVSFINNEFVLNPQLDEMTESQLDLVVAGTQDA 179
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLE- 297
LM++ +A+E+ E+ + + H +E I+LAEKA K+ +E L LE
Sbjct: 180 VLMVESEAKELPEEVMLGAVMFGHRHFQPVIEAIIQLAEKAAKEPRE--LITQDNAALES 237
Query: 298 KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE---ESLQVLPKAVDT 354
++ + E + A + P K ER +A+D VK E + L+V+
Sbjct: 238 EMLGVIEQDLRAAYAIPQ--KQERYKAVDAARAKVKAHFFPEGGTPAYDELRVM-GVFHH 294
Query: 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAP 414
+ +++R I+ G R+DGR + VRPI E+G LP HGS+LF+RG+TQ L TLG
Sbjct: 295 LEAKIVRWNILDTGRRIDGRDVKTVRPIVAEAGVLPRAHGSALFTRGETQALVVATLGTG 354
Query: 415 AEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEN 474
+ Q +++L G + FMLHY+FPPF + E G+ RRE+GHG LA +A+ VLP +
Sbjct: 355 EDEQFIDALEGTYKETFMLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPLHH 414
Query: 475 DFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534
+FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E D
Sbjct: 415 EFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLRAPTAGIAMGLIKEGD------ 468
Query: 535 KDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQ 594
+ +LTDILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L A GR
Sbjct: 469 -RFAVLTDILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMRVALAQAKDGRHH 527
Query: 595 ILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D 653
IL M + +++ R Q +PR+ L D +R +IG G + R+I E+TG +I +S D
Sbjct: 528 ILGEMSKALTSARAQLGEYAPRIEVLTIPVDKIREVIGSGGKVIREIVEKTGAKIDISDD 587
Query: 654 GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
GT+ V + + E + +++I I E EVG IY+G V V ++GAFV F G + GL+
Sbjct: 588 GTVKVASASG---ESIKSAINWIKSIASEPEVGQIYEGTVVKVMDFGAFVNFFGSKDGLV 644
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+S+L+ V + S+VV G ++ ++ +G D RG ++LS++AV
Sbjct: 645 HISQLAPRRVQKTSEVVKEGDKVKVKLLGFDERGKVRLSMRAV 687
>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|424809621|ref|ZP_18234998.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus SX-4]
gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|342323109|gb|EGU18895.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus SX-4]
Length = 709
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/717 (40%), Positives = 437/717 (60%), Gaps = 21/717 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
F+ G+ +TLETG +AR A AV+ MD+T V +V K V +DF PLTV+YQE+ +
Sbjct: 10 FQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTY 69
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S + PDI
Sbjct: 70 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDI 129
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +S +P+ GPIG R+G I GQ ++NP+ EL S L+LV A T LM
Sbjct: 130 ISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVAGTDNAVLM 189
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ ++E+++ A + H + + A + E+ + + KV+
Sbjct: 190 VESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAENTELKAKVAA 249
Query: 302 LAEAH-IEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAE +EA +++ R + +I +V AL E + + + + K V+
Sbjct: 250 LAETRLVEAYQITEKMARYAR---IHEISAEVSAALLAENEALDAKEIHTIFHDLEKTVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R+ IIA R+DGR+ D VR + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 307 RRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L G F+LHY+FPP+C+ E G RRE+GHG LA++ + AV+P ++FPYTV
Sbjct: 367 DELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVDEFPYTV 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + D+ +L
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEN-------DFVVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A RL IL M+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ ISA R+ +PR+ T+K D ++ +IG GA+ R++ EETG I + DGT+ +
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + ++ + ++ I E+EVG IY G V + ++GAFV G+ GL+H+S+++ +
Sbjct: 600 ATDGDQAKEAIRRIQEITA-EVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQA 776
V +VSD ++ GQ++ ++ + D +G ++LS+K P VE + V QA
Sbjct: 659 RVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETP-------VEAAAEVAPQA 708
>gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31]
gi|189037303|sp|B0T175.1|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31]
Length = 716
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 298/710 (41%), Positives = 446/710 (62%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+ E ++ E G + + LETG+IAR A+GAV+ M ET VL+T V + K +DF PLT
Sbjct: 1 MFEIMRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y EK +A G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VL
Sbjct: 61 VNYIEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A A SAAL++S P+ GPIG R+G + ++I+NPT+DEL S ++LV A
Sbjct: 121 DLENDPDIVAMCAASAALVISGAPFMGPIGGCRVGYVNDEYILNPTLDELKESKMDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + +M++ + +E+SE+ + G+ AH + I LAE A K+ +++ E
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQ----PE 236
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALE--EECDEESLQVLPKA 351
T + + +A + A D +Y+ +G+ + KA++ + D + P
Sbjct: 237 DTDALKAEVKKA-VGADLAD-AYTIRAKGDRHAALSAAKSKAVDTFAKSDANPAGIDPLK 294
Query: 352 VDTVRKR----VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ +V K ++R+ I+ G+R+DGR +D VRPI E G LP HGS+LF+RG+TQ +
Sbjct: 295 LISVFKELEADIVRRSILDTGIRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIV 354
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q +++L G + F+LHY+FPPF + E G+ RRE+GHG LA +AL
Sbjct: 355 VATLGTGDDEQFIDALEGTYKEAFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRALR 414
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
+LP + DFPYT+R+ SE+ S+GS+SMATVCG S+A+MDAG+PL V+G+++GL+ E
Sbjct: 415 PMLPAKEDFPYTIRLVSEITESNGSSSMATVCGASLAMMDAGVPLIRPVSGIAMGLILEK 474
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + L
Sbjct: 475 D-------GFAVLSDILGDEDHLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQALAQ 527
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR IL M + + APR + +P++ T+ D +R +IG G + R+I TG
Sbjct: 528 AKGGREHILGEMNKAMDAPREEVGDYAPKIETITIPTDKIREVIGTGGKVIREIVATTGA 587
Query: 648 RISVSD-GTLTVVAKNRSVMEKVLEKVDFI--IGREIEVGGIYKGVVTSVKEYGAFVEFN 704
++ ++D GT+ V A + + K+ +D+I I +E EVG IY G V V ++GAFV F
Sbjct: 588 KVDINDEGTVKVSASDGA---KIKAAIDWIKSITQEAEVGAIYDGKVVKVVDFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+HVS++S+E V++ SDV+ GQ + ++ +G D RG KLS+K V
Sbjct: 645 GAKDGLVHVSQISNERVAKPSDVLKEGQIVKVKLLGFDDRGKTKLSMKVV 694
>gi|421550310|ref|ZP_15996315.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69166]
gi|433471211|ref|ZP_20428602.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
68094]
gi|433477245|ref|ZP_20434568.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70012]
gi|433525893|ref|ZP_20482527.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69096]
gi|433538637|ref|ZP_20495117.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70030]
gi|402330525|gb|EJU65872.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69166]
gi|432209700|gb|ELK65667.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
68094]
gi|432216467|gb|ELK72348.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70012]
gi|432262084|gb|ELL17329.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69096]
gi|432274645|gb|ELL29732.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70030]
Length = 706
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 433/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|421539937|ref|ZP_15986090.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93004]
gi|402320221|gb|EJU55712.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93004]
Length = 706
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/701 (41%), Positives = 433/701 (61%), Gaps = 16/701 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQF 121
F+ G+ +TLETG+IAR A AV + M +T VL VT++K +DF PLTVDY E+ +
Sbjct: 9 FQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTY 68
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG E+E+L R+IDRPIRPLFP GFYH++Q++A V+S D + D DI
Sbjct: 69 AAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDI 128
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A SAAL+LS +P+ GPIG R+G + G +++NPT EL+ S L+LV A T + LM
Sbjct: 129 PAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLM 188
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+ + E + + H + + A++ + ++K +E+ + KV
Sbjct: 189 VESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNEELVAKVRG 248
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL-EEECDEESLQVLPKAVDTVRKRVI 360
+A I+ F K R LD+ VK+AL EE D + + + V+
Sbjct: 249 IAGETIKEAF--KIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKHLEADVV 306
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+ R+DGR VRP+ ++G LP HGS+LF+RG+TQ L TLG + Q +
Sbjct: 307 RSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQII 366
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G T RFMLHY+FPP+ EVG+ RRE+GHG LA++ALLAVLP DF YT+
Sbjct: 367 DALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTM 426
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG ++L+ AG+PL+ HVAG+++GL+ E + + +L
Sbjct: 427 RVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK-------FAVL 479
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ L A + RL ILD M+
Sbjct: 480 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 539
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVV 659
++ P+ + ++PRL T+K + D +R +IG G R I ETG I+++ DGT+T+
Sbjct: 540 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSV--KEYGAFVEFNGGQQGLLHVSELS 717
A + + ++++ I E+EVG +Y+G V + GA V G+ GL+H+S+++
Sbjct: 599 ATTQEAGDAAKKRIEQITA-EVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
HE V V D + VGQ ++++ + D RG ++LS+KA+ P
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAP 698
>gi|398333185|ref|ZP_10517890.1| polynucleotide phosphorylase/polyadenylase [Leptospira alexanderi
serovar Manhao 3 str. L 60]
Length = 697
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/692 (42%), Positives = 419/692 (60%), Gaps = 12/692 (1%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
+ G I LETG A+ A+GAVV +L+TV ++ +DF PLT +Y EK ++
Sbjct: 8 QYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYTEKLYS 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G P Y +RE P E E+L+ RIIDRPIRPLFP G++ EVQ+ VLS+DG
Sbjct: 68 VGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDVSVAGH 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
A NA SAAL +SDIP+ GPI RIGRI G+ I+NPT E+ SDL+LV A T+ +MI
Sbjct: 128 ALNAASAALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTKTHIVMI 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ +A+E+S +++ + LR A +++ Q A+K G K+E KL + L KV
Sbjct: 188 EGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKKIGVVKREVKLKARDVELLAKVKEY 247
Query: 303 AEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES-LQVLPKAVDTVRKRVIR 361
A A + A P K R + + + ++V + ++ +EE ++ + + + ++R
Sbjct: 248 AFAKLTAANQTPD--KTARNKEISNVNKEVVEFFKQTVEEEDKIKDIKTYLHELEYEIVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
++++ +G R DGR+LDE+RPI E LP HGSS+F+RG TQ L VTLG ++ QR E
Sbjct: 306 EQVLTKGTRFDGRKLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYE 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
+L G K FMLHY+FP F + EV + G RRE+GHG LAE+AL VLP +FPY +R
Sbjct: 366 TLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFPYVIR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE++ S+GS+SMA+VC GS+ALM AG+P++ V+G+++GL S+ S+G+ Y +L+
Sbjct: 426 VVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSD---SSGK---YAVLS 479
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DI GLEDH GDMD KIAGTR G+TA Q+D+K G+ D++ E A +GR ILD ME+
Sbjct: 480 DIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS +PR+ D + LIGP G R I E TG + + DG +T+
Sbjct: 540 HISKASDSLAGTAPRVIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISG 599
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ EK + VD E+EVG IY+G V + ++GAFVE G++GL H+S++ +
Sbjct: 600 SNQESAEKAAKMVDGFFA-EVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKR 658
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ V D+V G + ++ + D G I LS K
Sbjct: 659 VNSVKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690
>gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 709
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/708 (40%), Positives = 426/708 (60%), Gaps = 27/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST-VTSSKGDSVRDFLPLT 113
+ + F++E + G + LE+GK+AR A+GAV++ + ET VL T V + + +DF PLT
Sbjct: 1 MFKIFRKELDWGGTPLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E E LV R+IDRPIRPLFP F E QV+ +VLS
Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPSENETLVCRLIDRPIRPLFPKSFKCETQVICTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI A SAAL LS +P+ GPI RIG I ++++NPT++++ SDL+LV A
Sbjct: 121 DMENNPDIAAMIGASAALTLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDESDLDLVMA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A+E+SE+ + + H +E I LAE K+ ++
Sbjct: 181 GTMEGVLMVESEAQELSEEVMLGAVNFGHDAIKPVIEAIIDLAESCAKEPRDLPEEPAET 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFE------RGEALDKIGQDVKKALEEECDEESLQV 347
T+ + E EA + ++ + R EA DKIG D L
Sbjct: 241 STISDILKEFEGAFEAAYKIADKAERQAAVGAVRSEAKDKIGDDYDAVL----------- 289
Query: 348 LPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
+ + + V+R I+ GVR+DGR VR I E+G LP HGS+LF+RG+TQ +
Sbjct: 290 VGGLIKGLEADVVRGAILKTGVRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMV 349
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG + Q ++SLVG FMLHY+FPP+ + E G+ RRE+GHG LA +A+
Sbjct: 350 VATLGTGQDEQIIDSLVGEGRSNFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRAIR 409
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
++P + +FPYTVR+ SE+ S+GS+SMATVCGGS+ALMD+G+PL VAG+++GL+ E
Sbjct: 410 PLMPSKEEFPYTVRLVSEITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEG 469
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D D+ +L+DILG EDHLGDMDFK+AG+ G+T++Q+DIK I +I+ L+
Sbjct: 470 D-------DFAVLSDILGDEDHLGDMDFKVAGSDAGITSLQMDIKITSITPEIMQIALDQ 522
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A GR+ IL M + +++ R ++P++ TL D +R +IGP G + R+I E TG
Sbjct: 523 ARDGRIHILGEMAKALTSAREVLADSAPKITTLNIPVDKIRDIIGPGGKIIREICETTGA 582
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+I + DGT+ V A + E + ++ I+ E E+G IY G V ++GAFV F G
Sbjct: 583 KIDIEDDGTVKVAAVTGASGEAAVARIRDIVA-EPELGVIYDGKVVKTVDFGAFVNFLGA 641
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+SEL + + +D+ G + ++ IG D RG +KLS+K V
Sbjct: 642 KDGLVHISELQNGRTEKTTDICKEGDTVKVKVIGFDDRGKVKLSMKRV 689
>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
Length = 685
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 279/666 (41%), Positives = 421/666 (63%), Gaps = 12/666 (1%)
Query: 89 MDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRI 147
MD+T V TV + K +DF PLTVDYQE+ +A G IP + +REG P E E L+ R+
Sbjct: 4 MDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARL 63
Query: 148 IDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRI 207
IDRP+RPLFP GF++E+QV+A+V+S + + PD++A SAAL LS +P+ GPIG R+
Sbjct: 64 IDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARV 123
Query: 208 GRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVK 267
G I QF++NPT E +S L+LV A T + LM++ +A +SE+ + + + H +
Sbjct: 124 GFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILSEEQMLSAVVFGHQQQQV 183
Query: 268 YLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDK 327
+E ++AGK + ++ + + +V LAEA I + K R E +D
Sbjct: 184 VIENIKEFVKEAGKPRWDWVAPEPNTALINQVKALAEARIGDAYR--ITEKQARYEQIDA 241
Query: 328 IGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESG 387
I DV L + + S + + + ++R RIIA R+DGR +D VR + +G
Sbjct: 242 IKADVIAQLTAQDETVSEGAIIDIITALESSIVRGRIIAGEPRIDGRTVDTVRALDICTG 301
Query: 388 NLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGK 447
LP HGS++F+RG+TQ L TLG +AQ ++ L G + RF+ HY+FPP+ + E G+
Sbjct: 302 VLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGR 361
Query: 448 RVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMD 507
RRE+GHG LA++ +LAV+P +FPY VRV SE+ S+GS+SMA+VCG S+ALMD
Sbjct: 362 IGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALMD 421
Query: 508 AGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAI 567
AG+P++ VAG+++GLV E + + +L+DILG EDHLGDMDFK+AGTR GVTA+
Sbjct: 422 AGVPIKAAVAGIAMGLVKEEEK-------FVVLSDILGDEDHLGDMDFKVAGTREGVTAL 474
Query: 568 QLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTL 627
Q+DIK GI +I+ L A R+ IL ME+ I APR +PR+ T+K D +
Sbjct: 475 QMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRADISDFAPRIHTMKIDPKKI 534
Query: 628 RRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGI 686
+ +IG GA+ R + EETG I + DGT+ + A + + + V+ +++ I+ E+EV I
Sbjct: 535 KDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKAVMARIEDIVA-EVEVNAI 593
Query: 687 YKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN 746
YKG VT V ++GAFV GG++GL+H+S++++E V RV+D +SVGQ+++++ + D +
Sbjct: 594 YKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLSVGQEVTVKVVEIDRQNR 653
Query: 747 IKLSLK 752
I+L++K
Sbjct: 654 IRLTMK 659
>gi|452965322|gb|EME70346.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum sp.
SO-1]
Length = 720
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/723 (40%), Positives = 433/723 (59%), Gaps = 13/723 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ ++E G R + LETGK+AR A+GAV++ ET VL TV +K DF PLT
Sbjct: 3 MFNAHRKEITWGGRKLVLETGKVARQADGAVMVTYGETTVLCTVVGAKSQKPGIDFFPLT 62
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP + +REG P E+E LV R+IDRPIRPLF GF +EVQV+ +VLS
Sbjct: 63 VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI A TSAAL +S +P+ GP+G R+G + G++++NP + +L S+L+LV A
Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVNGEYVLNPLVGDLPNSELDLVVA 182
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T E LM++ +A+++SE+ + + H E ++ I LAE+ K + L
Sbjct: 183 GTVEGVLMVESEAKQLSEEIMLGAVMFGHREFQAVIQAIIDLAEECAKDP--WDLPEPPA 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
+ A+A + A + +Y ++ + +G KKAL + + V +
Sbjct: 241 EVAVVNGKFADAGVPAEMAE-AYKIIKKQDRYAAVGAVKKKALALLTEAAEIAVAGGILK 299
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ V+R I+ GVR+DGR VR I E G LP HGS+LF+RG+TQ L TLG
Sbjct: 300 HLEADVVRGNILKTGVRIDGRDTKTVRKIEVEVGVLPRAHGSALFTRGETQALVVATLGT 359
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+ Q ++ L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A+ LP +
Sbjct: 360 GQDEQIIDQLAGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAMRPTLPAK 419
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
FPYT+RV SE+ S+GS+SMATVCG S+A+MDAG+PL + VAG+++GL+ E
Sbjct: 420 EAFPYTMRVVSEITESNGSSSMATVCGTSLAMMDAGVPLPKPVAGIAMGLIKEG------ 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
D+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK I +I+ L A GR+
Sbjct: 474 -ADFAVLTDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITSITEEIMKIALGQAKDGRI 532
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL M + + R N+PR+ T+ + +R +IG G + R+I E+TG +I +
Sbjct: 533 HILGEMNKGLDHARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDD 592
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ V + + ++ ++ + I+ E E+G +Y G V V ++GAFV F G + GL+H
Sbjct: 593 DGTIKVASVDADAAQRAIDWIRGIVA-EPELGVVYNGKVVKVVDFGAFVNFLGSRDGLVH 651
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPV 772
+SEL+ E V++ +DVV G + ++ +G D RG +KLS+K V D+ +E
Sbjct: 652 ISELARERVAKTADVVKQGDAVKVKVLGFDDRGKVKLSMKQVDQTTGEDISAQLEAERAA 711
Query: 773 NKQ 775
+K+
Sbjct: 712 SKR 714
>gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
precursor [Mus musculus]
gi|377833162|ref|XP_003689309.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial isoform 1 [Mus musculus]
gi|71159797|sp|Q8K1R3.1|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
mitochondrial; AltName: Full=3'-5' RNA exonuclease
OLD35; AltName: Full=PNPase old-35; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Polynucleotide phosphorylase-like protein;
Flags: Precursor
gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus]
gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus]
gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus
musculus]
Length = 783
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/708 (41%), Positives = 428/708 (60%), Gaps = 22/708 (3%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQ 123
++G R + + +GK+ARFA+G V+ +T V+ T S S F+PL VDY++K A
Sbjct: 50 DLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAA 109
Query: 124 GVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMA 183
G IP Y+RRE +RE+L R+IDR IRPLFPAG++++ QV+ ++L+ DG +PDI+A
Sbjct: 110 GRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDILA 169
Query: 184 ANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA-CTREKTLMI 242
N S AL LSDIPW GP+G +RIG I G+ +VNPT E+S S LNLV A + + +M+
Sbjct: 170 VNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQIVML 229
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE-YKLSMISEQTLEKVSN 301
+ A I ++D +++ + ++ +L ++ G K+ K+ S + ++
Sbjct: 230 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVKYTKI 289
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
+A + AVFTD + K R EA++KI D ++ L+E+ E + ++ + V K V R
Sbjct: 290 IAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFR 349
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA---- 417
I+ E R DGR L +R I CE LHGS+LF RG TQVLCTVT + +
Sbjct: 350 SIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSD 409
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
Q + ++ G K FMLHY FPP+ NE GK G+NRRE+GHG LAEKAL V+P DFP
Sbjct: 410 QIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP--KDFP 467
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
+T+RV SEV+ S+GS+SMA+ CGGS+ALMDAG+P+ VAGV+VGLV++ +P GEI+DY
Sbjct: 468 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGEIEDY 527
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
R+LTDILG+ED+ GDMDFKIAGT G+TA+Q DIK G+P+ II E ++ A + +IL
Sbjct: 528 RLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS-VSDGTL 656
M + IS PR N P + T+K + +GP G +K++ ETG IS V + T
Sbjct: 588 IMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETF 647
Query: 657 TVVAKNRSVMEKVLEKVDFII-------GREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
++ A + M E DFI +++E G +Y +T +++ G V+
Sbjct: 648 SIFAPTPTAMH---EARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 704
Query: 710 -LLHVSELSHEPVSRVSDV-VSVGQQLSLRCIGQD-VRGNIKLSLKAV 754
LLH S+L + + + + VGQ++ ++ G+D G ++LS K +
Sbjct: 705 VLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752
>gi|424105070|ref|ZP_17839813.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1990]
gi|390661359|gb|EIN39017.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1990]
Length = 677
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/671 (42%), Positives = 427/671 (63%), Gaps = 22/671 (3%)
Query: 89 MDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRI 147
MD+T V TV K +DF PLTV+YQE+ +A G IP ++ RREG P E E L+ R+
Sbjct: 1 MDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARL 60
Query: 148 IDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRI 207
IDRPIRPLFP GF +EVQV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+
Sbjct: 61 IDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARV 120
Query: 208 GRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVK 267
G I Q+++NPT DEL S L+LV A T LM++ +A +SE + + H +
Sbjct: 121 GYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQV 180
Query: 268 YLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVF--TDPSYSKFERGEAL 325
++ L ++AGK + +++ ++E +V+ LAEA + + TD K ER +
Sbjct: 181 VIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD----KQERYAQV 236
Query: 326 DKIGQDVKKAL---EEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPI 382
D I + L +E DE L + A++ K V+R R++A R+DGR+ D +R +
Sbjct: 237 DVIKSETIATLLAEDETLDENELGEILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGL 293
Query: 383 YCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCI 442
+G LP HGS+LF+RG+TQ L T TLG +AQ L+ L+G T F+ HY+FPP+ +
Sbjct: 294 DVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSV 353
Query: 443 NEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGS 502
E G RRE+GHG LA++ +LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S
Sbjct: 354 GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGAS 413
Query: 503 MALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRI 562
+ALMDAG+P++ VAG+++GLV E D +Y +L+DILG EDHLGDMDFK+AG+R
Sbjct: 414 LALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRD 466
Query: 563 GVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKY 622
G++A+Q+DIK GI +I+ L A RL IL ME+ I+APR +PR+ T+K
Sbjct: 467 GISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKI 526
Query: 623 DNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREI 681
+ D ++ +IG G++ R + EETG I + DGT+ + A + + + +++ I EI
Sbjct: 527 NPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EI 585
Query: 682 EVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQ 741
EVG +Y G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +GQ++ ++ +
Sbjct: 586 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 645
Query: 742 DVRGNIKLSLK 752
D +G I+LS+K
Sbjct: 646 DRQGRIRLSIK 656
>gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|424916082|ref|ZP_18339446.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM597]
gi|226702681|sp|B5ZW24.1|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|392852258|gb|EJB04779.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM597]
Length = 712
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/704 (41%), Positives = 438/704 (62%), Gaps = 15/704 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ +T E E R + LETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ A SAAL LS +P+ GP+G R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E++E+ + + H L+ I+LAE A K+ ++++ SE
Sbjct: 181 GTYDAVLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDE--ESLQVLPKA 351
E + + EA + + K +R A+D + VK E E + +V+
Sbjct: 241 LEAEMLKHF-EAELREGYK--ITQKADRYAAVDAVKAKVKAHFFPEGVEPKYTAEVIGAV 297
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
++ +++R I+ R+DGR L VRPI E G LP HGS+LF+RG+TQ + TL
Sbjct: 298 FKHLQAKIVRWNILDTKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATL 357
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP
Sbjct: 358 GTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLP 417
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL + VAG+++GL+ E D
Sbjct: 418 TAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGD--- 474
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ L A G
Sbjct: 475 ----RFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGG 530
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
R IL M + I+ R Q +PR+ + D +R +IG G + R+I E+TG +I++
Sbjct: 531 RAHILGEMAKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINI 590
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + + + +E + + I+ E E+G IY+G V ++GAFV F G + GL
Sbjct: 591 EDDGTVKIASSSGKEIEAARKWIHSIVA-EPEIGQIYEGTVVKTADFGAFVNFFGARDGL 649
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+H+S+L+ E V++ DVV G ++ ++ +G D RG ++LS+K V
Sbjct: 650 VHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
25840]
gi|187470942|sp|A5VTB6.1|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
25840]
Length = 714
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/710 (41%), Positives = 438/710 (61%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +T+ETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHI----EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + L V N L EA+ +A + +K + E G + + L E+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQ------ 294
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 295 --FATIFTHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++GL+
Sbjct: 413 IHPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAVLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKT 585
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F
Sbjct: 586 GAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 645 GPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
>gi|420553973|ref|ZP_15051189.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-02]
gi|420564958|ref|ZP_15060894.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-04]
gi|420575662|ref|ZP_15070595.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-06]
gi|420580954|ref|ZP_15075407.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-07]
gi|420586342|ref|ZP_15080286.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-08]
gi|420602515|ref|ZP_15094768.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-11]
gi|420613309|ref|ZP_15104496.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-13]
gi|420618679|ref|ZP_15109179.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-14]
gi|420623988|ref|ZP_15113961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-15]
gi|420634192|ref|ZP_15123163.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-19]
gi|420650174|ref|ZP_15137630.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-32]
gi|420655794|ref|ZP_15142685.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-34]
gi|420661235|ref|ZP_15147547.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-36]
gi|420666588|ref|ZP_15152371.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-42]
gi|420671445|ref|ZP_15156800.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-45]
gi|420676799|ref|ZP_15161666.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-46]
gi|420687759|ref|ZP_15171489.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-48]
gi|420692998|ref|ZP_15176078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-52]
gi|420704611|ref|ZP_15185788.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-54]
gi|420706389|ref|ZP_15187304.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-55]
gi|420720923|ref|ZP_15200119.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-58]
gi|420726384|ref|ZP_15204934.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-59]
gi|420748217|ref|ZP_15224254.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-64]
gi|420759442|ref|ZP_15233758.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-66]
gi|420764663|ref|ZP_15238370.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-71]
gi|420769905|ref|ZP_15243068.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-72]
gi|420774874|ref|ZP_15247575.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-76]
gi|420807166|ref|ZP_15276391.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-93]
gi|420818029|ref|ZP_15286177.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-95]
gi|420823360|ref|ZP_15290952.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-96]
gi|420828433|ref|ZP_15295519.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-98]
gi|420838979|ref|ZP_15305049.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-100]
gi|420844180|ref|ZP_15309765.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-101]
gi|391422606|gb|EIQ85167.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-02]
gi|391437557|gb|EIQ98406.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-04]
gi|391442366|gb|EIR02770.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-06]
gi|391454471|gb|EIR13680.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-07]
gi|391455041|gb|EIR14193.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-08]
gi|391471260|gb|EIR28839.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-11]
gi|391486108|gb|EIR42174.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-13]
gi|391487775|gb|EIR43674.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-15]
gi|391487882|gb|EIR43773.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-14]
gi|391502348|gb|EIR56657.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-19]
gi|391519542|gb|EIR72169.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-34]
gi|391520338|gb|EIR72896.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-32]
gi|391532775|gb|EIR84127.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-36]
gi|391535538|gb|EIR86599.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-42]
gi|391538066|gb|EIR88900.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-45]
gi|391551006|gb|EIS00561.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-46]
gi|391551707|gb|EIS01198.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-48]
gi|391565906|gb|EIS13954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-52]
gi|391571328|gb|EIS18694.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-54]
gi|391588602|gb|EIS33609.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-55]
gi|391593007|gb|EIS37364.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-58]
gi|391597108|gb|EIS40961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-59]
gi|391613237|gb|EIS55227.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-64]
gi|391627830|gb|EIS67996.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-66]
gi|391634437|gb|EIS73715.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-71]
gi|391636270|gb|EIS75328.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-72]
gi|391646534|gb|EIS84268.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-76]
gi|391676433|gb|EIT10843.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-93]
gi|391690528|gb|EIT23552.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-95]
gi|391693033|gb|EIT25818.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-96]
gi|391694762|gb|EIT27392.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-98]
gi|391710727|gb|EIT41757.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-100]
gi|391711306|gb|EIT42283.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-101]
Length = 671
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/671 (42%), Positives = 425/671 (63%), Gaps = 13/671 (1%)
Query: 89 MDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRI 147
MD+T V TV K + F PLTV+YQE+ +A G IP ++ RREG P E E L R+
Sbjct: 1 MDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRL 60
Query: 148 IDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRI 207
IDRPIRPLFP F +EVQV+A+V+S + + +PDI+A SAAL LS IP+ GPIG R+
Sbjct: 61 IDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARV 120
Query: 208 GRICGQFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVK 267
G I Q+++NPT DEL S L+LV A T LM++ +A +SE+ + + H +
Sbjct: 121 GFINDQYVLNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQV 180
Query: 268 YLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDK 327
+E L +AGK K +++ ++E +V+ LAEA + + K ER +D
Sbjct: 181 VIENINALVAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYR--ITEKQERYTQVDA 238
Query: 328 IGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESG 387
I DV +AL + D + + +V K V+R R++ R+DGR+ D +R + +G
Sbjct: 239 IKADVTEALLAQDDTLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTG 298
Query: 388 NLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGK 447
LP HGS+LF+RG+TQ L T TLG +AQ ++ L+G T F+LHY+FPP+C+ E G
Sbjct: 299 ILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGM 358
Query: 448 RVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMD 507
RRE+GHG LA++ +LAV+P ++FPYT+RV SE+ S+GS+SMA+VCG S+ALMD
Sbjct: 359 VGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMD 418
Query: 508 AGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAI 567
AG+P++ VAG+++GLV E D ++ +L+DILG EDHLGDMDFK+AG+R GVTA+
Sbjct: 419 AGVPIKAAVAGIAMGLVKEGD-------NFVVLSDILGDEDHLGDMDFKVAGSRDGVTAL 471
Query: 568 QLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTL 627
Q+DIK GI +I+ L A RL IL ME+ IS PR +PR+ T+K + + +
Sbjct: 472 QMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKI 531
Query: 628 RRLIGPLGALKRKIEEETGGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGI 686
+ +IG G++ R + +ETG I + DGT+ + A + + + +++ I EIEVG I
Sbjct: 532 KDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITA-EIEVGRI 590
Query: 687 YKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN 746
Y G VT + ++GAFV GG++GL+H+S+++ + V +V+D + +GQ + ++ + D +G
Sbjct: 591 YAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGR 650
Query: 747 IKLSLK-AVSP 756
I+LS+K A +P
Sbjct: 651 IRLSIKEATTP 661
>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
KF-1]
gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
KF-1]
Length = 747
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/699 (40%), Positives = 434/699 (62%), Gaps = 14/699 (2%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQF 121
F+ G +T+ETG+IAR A+GAV++ +D+T VL+TV SK + +DF PLTVDY EK +
Sbjct: 11 FQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTY 70
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP ++ +RE P E E L R+IDRPIRPLFP GFY++V V+ +S + + D DI
Sbjct: 71 AAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADI 130
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
A A SAAL +S +P+ GPIG R+G I G++++NP + S ++LV A T LM
Sbjct: 131 AAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVAGTESAVLM 190
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A+++ E+ + + H + ++ L + GK ++ E + KV
Sbjct: 191 VESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDEALIAKVVE 250
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEE-CDEESLQVLPKAVDTVRKRVI 360
L EA + A + + +K R A DVK AL E+ + ++V D + ++
Sbjct: 251 LGEAKLRAAYQE--RNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFD-IEAGIV 307
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R +I+A R+DGR VRPI S LP HGS+LF+RG+TQ L TLG +AQ++
Sbjct: 308 RSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKI 367
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
++L G RF+ HY+ PPF EVG+ RRE+GHG LA++AL A LP + +FPYT+
Sbjct: 368 DALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKEEFPYTI 427
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCGG +++MDAG+P++ HVAG+++GL+ E + + +L
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDN-------KFAVL 480
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILG EDHLGDMDFK+AGT G+TA+Q+DIK GI +I+ L A + R+ IL M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ + + +P+L T+K + + +R +IG GA R + EETG +I++ DGT+T+
Sbjct: 541 EAMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIA 600
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + E +++ I E+E+G IY+G + + E+GA V G+ GLLH+S+++HE
Sbjct: 601 ATDGAKAEAAKLRIEQITA-EVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHE 659
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
V +V+D + GQ + ++ + D +G +KLS+KA++ RP
Sbjct: 660 RVEKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERP 698
>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase [Brucella suis 1330]
gi|376281812|ref|YP_005155818.1| polynucleotide phosphorylase/polyadenylase [Brucella suis VBI22]
gi|384225804|ref|YP_005616968.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|81751805|sp|Q8FXS9.1|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
gi|343383984|gb|AEM19476.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|358259411|gb|AEU07146.1| polynucleotide phosphorylase/polyadenylase [Brucella suis VBI22]
Length = 714
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 296/710 (41%), Positives = 439/710 (61%), Gaps = 26/710 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ T K E E G R +TLETGKIAR A+GAV+ ET VL+TV S+K +DF PLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E E LV R+IDRPIRPLF G+ ++ QV+ +VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + +PDI++ A SAAL +S +P+ GPI R+G I G++++NP +DE+ S L+LV A
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK---LSM 290
T E LM++ +A+E+ E + + H ++ I+LAE A K+ ++++ LS
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240
Query: 291 ISEQTLEKVSN-LAEAHI----EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL 345
+ + L V N L EA+ +A + +K + E G + E E E
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVE-----ETEMSAEQF 295
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ K ++ +++R I+ G R+DGR L VRPI E G LP HGS+LF+RG+TQ
Sbjct: 296 ATIFK---HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQA 352
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
+ TLG + Q +++L G + FMLHY+FPP+ + E G+ RRE+GHG LA +A
Sbjct: 353 IVVATLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRA 412
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+ +LP FPYT+R SE+ S+GS+SMATVCG S+ALMDAG+P+ VAG+++GL+
Sbjct: 413 IHPMLPAAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIK 472
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE + +L+DILG ED+LGDMDFK+AGT G+T++Q+DIK GI +I+ L
Sbjct: 473 E-----GE--RFAVLSDILGDEDYLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVAL 525
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
E A GR+ IL M + IS+ R + +PR+ + D +R +IG G + R+I E+T
Sbjct: 526 EQAKGGRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKT 585
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G +I++ DGT+ + + N +E + + I+ E EVG IY+G V ++GAFV F
Sbjct: 586 GAKINIEDDGTVKIASSNGKEIEAAKKWIHSIVA-EPEVGEIYEGTVVKTADFGAFVNFF 644
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
G + GL+H+S+L+ + V++ +DVV GQ++ ++ +G D RG ++LS+K V
Sbjct: 645 GPRDGLVHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVV 694
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,939,857,163
Number of Sequences: 23463169
Number of extensions: 646061704
Number of successful extensions: 2076036
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10846
Number of HSP's successfully gapped in prelim test: 4919
Number of HSP's that attempted gapping in prelim test: 2024914
Number of HSP's gapped (non-prelim): 27867
length of query: 974
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 821
effective length of database: 8,769,330,510
effective search space: 7199620348710
effective search space used: 7199620348710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 82 (36.2 bits)