BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002054
(974 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial
OS=Arabidopsis thaliana GN=PNP2 PE=2 SV=1
Length = 991
Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/1011 (67%), Positives = 804/1011 (79%), Gaps = 63/1011 (6%)
Query: 1 MSSLATKTHPLLNNLPPFLTWRALGFRTICSGRLGFAPCEPAPPTPAPSVAGTKVLETFK 60
MSS+ + +LP FL WRALGFRTICSGRLGFAP P +P AGTK+LE+FK
Sbjct: 1 MSSIVNRASSA--SLPNFLAWRALGFRTICSGRLGFAPSVPD----SPVSAGTKILESFK 54
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQ 120
EEFE+GSR+++ ETGKIARFANG+VVLGMDETKVLSTVT +K DS RDFLPLTVDYQEKQ
Sbjct: 55 EEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPRDFLPLTVDYQEKQ 114
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+AQG+IPNTYMRREGAPKERELL GR+IDRPIRPLFP GFYHEVQ+MASVLSSDGKQDPD
Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPD 174
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+AANA+SAALMLSD+PWGGPIG+IRIGRICGQF+VNPTMDELS SDLNL+YACTR+KT+
Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
MIDVQ+REISEKDL A LRLAHPEAVKYL+PQIRLAEKAGKQKKEYKLSM+S++TLEKV+
Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVA 294
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
+LA IE+VFTDPSY KFERGEALD IG+DV+K EEE D+ESL +LPKAVDTVRK+V+
Sbjct: 295 DLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKKVV 354
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R+I++G RVDGR +DEVRPIYCES LP LHGS+LFSRGDTQVLCTVTLGAPAEAQ L
Sbjct: 355 RSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSL 414
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+SLVGPP KRFMLHYSFPP+C NEVGKR GLNRREVGHGTLAEKALLAVLPPE FPYT+
Sbjct: 415 DSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTI 474
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
R+NSEVM+SDGSTSMA+VCGGSMALMDAGIPL+ HVAGVSVGL+++VDPS+GEIKDYRI+
Sbjct: 475 RINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIV 534
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
TDILGLEDHLGDMDFKIAGTR GVTAIQLDIKPAGIPLDI+CE LE+A + RLQILDHME
Sbjct: 535 TDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHME 594
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVA 660
R I++PR QD SPRLATLKY ND+LR LIGP+G LKRKIE ETG R+S+ +GTLT+VA
Sbjct: 595 RNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLTIVA 654
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
KN+ VMEK E+VDFIIGRE+ VGG+YKG V+S+KEYGAFVEF GGQQGLLH+SELSHEP
Sbjct: 655 KNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEP 714
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKGVVEGSVPVNKQATDVW 780
VS+VSDV+ +GQ ++ CI DVRGNIKLS KA+ P+P+ G PV K+++ V+
Sbjct: 715 VSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKPKRKPASDA-GKDPVMKESSTVY 773
Query: 781 ---ASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKS 837
+SVG++ M TP + S S PAV+IR+A EC+E EK+S + + K
Sbjct: 774 IENSSVGEIVAS------MPSIVTP-LQKSRLSVPAVVIRTAVECNEAEKSSPVNDNDKP 826
Query: 838 TLKSTLASKSNSKPKKFTS-----------------------------QSDFFSSTNIQK 868
+T SK + KPK S Q S + +
Sbjct: 827 RRAAT--SKPDRKPKSTASKLIATQKEEEALESIAPEETSAECGEILKQDGKLKSVSPKN 884
Query: 869 ST------SFSQREREELAECLFGTEDGDEDNKGTRVEAIVSAKNLKLGTKVAAKVYQVR 922
++ SFS+ ++ + E L +E+ E++ A VS + LK+GT++ A V VR
Sbjct: 885 NSTASNLVSFSKAKKSTMKENL--SENKAEES------ASVSTRKLKIGTEMTATVDHVR 936
Query: 923 ARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
A GLVLDLGG IRGMY F+ ++ K F GD L VKC+SF KG+PV++LVD
Sbjct: 937 ALGLVLDLGGEIRGMYIFQGDKDK-FKKGDTLRVKCTSFNTKGVPVMALVD 986
>sp|Q6KAI0|PNP2_ORYSJ Polyribonucleotide nucleotidyltransferase 2, mitochondrial OS=Oryza
sativa subsp. japonica GN=PNP2 PE=2 SV=1
Length = 982
Score = 1216 bits (3145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/941 (66%), Positives = 745/941 (79%), Gaps = 31/941 (3%)
Query: 52 GTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFL 110
G KVLE+F+EEFEIG R+I+ ETGK+ARFANG+VV+ MD+T VLSTV ++K + VRDFL
Sbjct: 54 GRKVLESFREEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFL 113
Query: 111 PLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVM--- 167
PLTVDYQEKQ+AQGVIP TYMRREGAPKERELL GRIIDRPIRPLFP GFYHEVQVM
Sbjct: 114 PLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNAT 173
Query: 168 ---ASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELS 224
+V+SSDGKQDPD+MAANA+SAALMLSDIPW GPIG+IR+GRI G F++NPT+DEL
Sbjct: 174 IIMVNVISSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELG 233
Query: 225 LSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284
LSDLNLVYAC+R+KTLMIDVQAREI+E+DL+AG++LAH EAVK + PQ+RLA++AGK+KK
Sbjct: 234 LSDLNLVYACSRDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKK 293
Query: 285 EYKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEES 344
EYK+S+IS+++ EK+ L+EA IE VFTD +Y KFERGEAL+ I Q VK LEEECDE+S
Sbjct: 294 EYKISLISDKSYEKIRTLSEAPIEEVFTDSTYGKFERGEALENITQSVKAKLEEECDEDS 353
Query: 345 LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQ 404
L+ L KAVDTVRK+VIRKRII +G+RVDGRQLDEVRP+YCES PILHGS+LFSRGDTQ
Sbjct: 354 LKFLHKAVDTVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQ 413
Query: 405 VLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEK 464
VLCTVTLGAP +AQRL+S+VGPPTKRFMLHYSFPPF INEV KR GLNRREVGHGTLAEK
Sbjct: 414 VLCTVTLGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEK 473
Query: 465 ALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLV 524
ALLAVLPPE +FPYTVRVNSEVMASDGSTSMA+VCGGSMALMDAGIP++EHVAGVSVGLV
Sbjct: 474 ALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLV 533
Query: 525 SEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICEC 584
SEVD +TG+I YRILTDILGLEDHLGDMDFKIAGTR G+TAIQLDIKPAGIPLDIICE
Sbjct: 534 SEVDQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICES 593
Query: 585 LEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEE 644
LE A K R QILD M++EIS+ R +D +SPRLATL + +D+LR+L+ ++KIE+E
Sbjct: 594 LEPARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLL----FHRKKIEQE 649
Query: 645 TGGRISVSDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
TG R+SVSDGT+T+VAK + +M+K +EKV+F++GREIEVG YKGVV+S+KEYGAFVEFN
Sbjct: 650 TGARVSVSDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFN 709
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADVKG 764
GGQQGLLH+SELSH+ VS+VSDVVSVGQ LSL CIGQD+RGNIKLSLKA P
Sbjct: 710 GGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLPHAHEKKDL 769
Query: 765 VVEGSVPVNKQATDVWASVGDV-SNGQNPELPMRKN------ETPGVNSSTSSTPAVLIR 817
+ P+ Q W +V ++ S N E + K+ ETPG STPAV+IR
Sbjct: 770 ASNHTDPLPSQEVVGWTAVENMPSKDANAEPSISKDEDNMIEETPGC-----STPAVIIR 824
Query: 818 SAAECDEEEKASGFSQSSKSTLKSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQRER 877
SAAECD ++ + + KS S SKP + S+ +++ +++ +
Sbjct: 825 SAAECDAQDVTNDPKKKRPKVAKS---SPKLSKPASERQEVKRTSAKKTSGASTTAKKNK 881
Query: 878 EELAECLFGTEDGDEDNKGTRVEAIVSAKN-----LKLGTKVAAKVYQVRARGLVLDLGG 932
+E A+ D + + + S N +KLG V AKVYQ+RA GLVL+L
Sbjct: 882 KEKADSSNDVLDAIPEQNKSNIMNYSSPSNFRSGSMKLGDVVTAKVYQIRAYGLVLELSD 941
Query: 933 GIRGMYRFENNEKKDFVVGDELLVKCSSFTGKGIPVVSLVD 973
G+RGM++F N KDF VG+ELLVKCSSF KGIPV SL+D
Sbjct: 942 GVRGMHKFAENGHKDFEVGEELLVKCSSFNAKGIPVFSLLD 982
>sp|B3DZ86|PNP_METI4 Polyribonucleotide nucleotidyltransferase OS=Methylacidiphilum
infernorum (isolate V4) GN=pnp PE=3 SV=2
Length = 707
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 322/704 (45%), Positives = 463/704 (65%), Gaps = 17/704 (2%)
Query: 57 ETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLST---VTSSKGDSVRDFLPLT 113
E K +F G + I ETGK+A+FA+G+V + ET VL T VT K D +DFLPL
Sbjct: 3 EYIKRKF--GDQTIVFETGKLAKFADGSVTVSYGETAVLVTAVSVTELKED--QDFLPLQ 58
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+EK A G P Y R+EG P ++E+L R+IDRP+RPLFP G+++E Q++ ++LS+
Sbjct: 59 VEYREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSA 118
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
DG+ DPD+MA N SAALM+SDIP+ GP+G +RIG+I G++I+NPT E +SD++LVY
Sbjct: 119 DGQNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYV 178
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
+ LMI+ ARE E++ L AH + + Q LAEK GK K+ ++ E
Sbjct: 179 GSEHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQKELAEKVGKPKRS---CVLFE 235
Query: 294 QTLEKVSNLAEAHIEAVFTDPSY--SKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+ L + LAE + + D Y SK ER + L K+ +++ + EE + + + +
Sbjct: 236 ENLAITNRLAELY-SSQLQDALYTSSKTERQKKLAKLKEELTAKILEEFPTATPREITSS 294
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
D+++K + R ++ R DGR +++RPI E+ +P HGSSLF RG+TQ LC TL
Sbjct: 295 YDSLQKTIFRTNVLETKRRCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATL 354
Query: 412 GAPAEAQRLESL-VGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
+ EAQ L++ G +KRF+LHY FPPF + EVG+ G +RRE+GHG LAE++LL V+
Sbjct: 355 ASLNEAQELDAYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVI 414
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P E DFPY +RV+SE++ S+GSTSMATVCGGS+ALMDAG+PL+ VAG+SVGLV +
Sbjct: 415 PSETDFPYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEED 474
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
+ Y +LTDILGLEDH GDMDFKIAGTR G+T QLD+K GIPLD++ + + + K
Sbjct: 475 F-DWSRYCLLTDILGLEDHYGDMDFKIAGTRKGITGFQLDLKLRGIPLDVMAKAIFQSQK 533
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
R+ ILD M++ I+APR + +++PR+ +K D + LIGP G +KI E+G I+
Sbjct: 534 ARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAEIT 593
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ + + + +E E ++ ++G E+ VGGIY+ V SVK++G F+E G +G
Sbjct: 594 IEDDGTVMIYSSSADSLEAAREMIEDMVG-EVTVGGIYRSKVVSVKDFGCFIEIKGKGEG 652
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753
L+H+SELS PV RV VV VG+++ ++CIG D +G K S KA
Sbjct: 653 LVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKA 696
>sp|B1KRQ5|PNP_SHEWM Polyribonucleotide nucleotidyltransferase OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=pnp PE=3 SV=1
Length = 702
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 297/692 (42%), Positives = 446/692 (64%), Gaps = 12/692 (1%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEKQF 121
FE G +TLETG IAR AN AV+ M +T VL TV K + V RDF PLTV+YQEK +
Sbjct: 8 FEYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTY 67
Query: 122 AQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDI 181
A G IP + +REG P E E L+ R+IDRPIRPLFP GF +EVQV+ +V+S D + +PD+
Sbjct: 68 AAGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 127
Query: 182 MAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLM 241
++ TSAAL +SD+P+ GP+G+ R+G G++++NP + +L+ SDL+LV A T+ LM
Sbjct: 128 ISMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAGTQGAVLM 187
Query: 242 IDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSN 301
++ +A + E+ + G+ H + + L +AGK K ++ +EK+
Sbjct: 188 VESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAEDTDLVEKIKG 247
Query: 302 LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
LAEA + + K ER +A+ + L EE + L+ + K + ++ K+V+R
Sbjct: 248 LAEAELTNAYQ--IADKHERRDAVIALKNAAVAKLVEENADVDLREVDKLLGSLEKKVVR 305
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
RII+ R+DGR+ D VR + +G LP HGSSLF+RG+TQ L T TLG +AQ+++
Sbjct: 306 SRIISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVD 365
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
S++G T RFMLHY+FPP+ + E G RRE+GHG LA + + AV+P +FPY+VR
Sbjct: 366 SIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVR 425
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
V SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D D+ +L+
Sbjct: 426 VVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGD-------DFVVLS 478
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGTR G+TA+Q+DIK GI +I+ L+ A+ R+ IL+ M++
Sbjct: 479 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQ 538
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVVA 660
IS R ++PR+ TLK + + +R +IG GA R + EETG I + DGT+ + +
Sbjct: 539 AISGHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS 598
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N ++ + +++ I E+EVG +Y G V + ++GAFV G+ GL+H+S+++ E
Sbjct: 599 ANGEATKEAIRRIEEITA-EVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER 657
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V+ VSD + VGQ++ ++ + D +G ++LS+K
Sbjct: 658 VANVSDYLQVGQEVKVKVMEVDRQGRVRLSMK 689
>sp|B9M1G5|PNP_GEOSF Polyribonucleotide nucleotidyltransferase OS=Geobacter sp. (strain
FRC-32) GN=pnp PE=3 SV=1
Length = 696
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 302/696 (43%), Positives = 437/696 (62%), Gaps = 15/696 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K + E G R IT+ETGK+A+ A+GAVV+ +T+VL T ++K +DF PLTV+YQE
Sbjct: 4 KVQVECGGRTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQE 63
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +RE P + E L R+IDRPIRPLFP F ++ Q+MA+V+S+D D
Sbjct: 64 KAYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDND 123
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
P I++ SAALM+SDIP+ GPI +++GRI G+F+ NP +E+ SD+ +V A +++
Sbjct: 124 PGILSMVGASAALMVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSDIEIVVAASKDA 183
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A E+SE+D+ + H L Q+ LAEKAG K+E +++E K
Sbjct: 184 IIMVEGSAAEVSEEDMLEAIFFGHAAIQGLLAAQVELAEKAGVAKREVLPPVVNEALKAK 243
Query: 299 VSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357
V LA + + EAV SK ER +D I +V AL EE E + + + +
Sbjct: 244 VKELAYSRMKEAVRIK---SKVERHNTIDTITGEVLTALAEEF-EGAAKEIKGFLGDFEY 299
Query: 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEA 417
++R+ II +G R+DGR +R I E G LP HGS+LF+RG+TQ L TLG +
Sbjct: 300 DLVREHIIKDGERIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDE 359
Query: 418 QRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP 477
QR++SL G KRF+LHY+FPPF + E R+ RRE+GHG LAE+AL V+P FP
Sbjct: 360 QRIDSLFGESKKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALARVVPKHESFP 419
Query: 478 YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDY 537
YT+R+ S+++ S+GS+SMA+VCGGSM++MDAGIP++ VAG+++GL+ E D D+
Sbjct: 420 YTIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGD-------DF 472
Query: 538 RILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILD 597
IL+DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L+ AH+GRL IL
Sbjct: 473 AILSDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIGGVTREIMGVALKQAHEGRLHILS 532
Query: 598 HMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTL 656
M I + + +PR+ T+ D +R +IG G R I E TG I + D G +
Sbjct: 533 KMAETIGTSKAELSTFAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKI 592
Query: 657 TVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL 716
+ + +++ + ++ + + E E G +Y G+V V E+GAFVE G GL+H+SEL
Sbjct: 593 NIASTDKAACDMAIKMIRDLTA-EAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISEL 651
Query: 717 SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V V+DV+ G ++ ++CIG D +G IKLS K
Sbjct: 652 DTERVKNVTDVLKEGDKVLVKCIGIDKQGKIKLSRK 687
>sp|Q39VA1|PNP_GEOMG Polyribonucleotide nucleotidyltransferase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=pnp PE=3 SV=1
Length = 697
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 303/695 (43%), Positives = 431/695 (62%), Gaps = 13/695 (1%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQE 118
K + G R IT+ TGK+A+ A+GAV++ ET VL T + K +DF PLTV+YQE
Sbjct: 5 KVNVDFGGRTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E E L R IDRPIRPLFP F ++ Q+MA+V+S+D D
Sbjct: 65 KAYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDND 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
P I+A SAAL +SDIP+ GPI +++GR+ G+FI NPT ++L+ SDL +V A +R+
Sbjct: 125 PGILAMIGASAALEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASDLEVVVAASRDA 184
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ A EISE DL + H ++ QI L ++AG K+E + E K
Sbjct: 185 VIMVEGGAAEISEADLLEAIFFGHASVQPIIDAQIELRKQAGVPKREIAPPAVDEALGAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKR 358
V LA A ++ SK ER + I + ALE + ++ +D
Sbjct: 245 VKELAYAQMKDAVR--IRSKQERHNRISAIADETVAALEADFSGRGAEI-KDFLDGFEYE 301
Query: 359 VIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQ 418
++R+ I+ +G R+DGR +RPI E G LP +HGS+LF+RG+TQ L TLG ++ Q
Sbjct: 302 LVREHILKDGERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQ 361
Query: 419 RLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY 478
R++SL G KRFMLHY+FPPF + E R+ RRE+GHG LAE+AL VLP +DFPY
Sbjct: 362 RIDSLYGESRKRFMLHYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDDFPY 421
Query: 479 TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYR 538
T+R+ S+++ S+GS+SMA+VCGG++++MDAG+P+ VAG+++GL+ E D D
Sbjct: 422 TIRIVSDILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGD-------DIA 474
Query: 539 ILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598
IL+DILG EDHLGDMDFK+AGT GVTAIQ+DIK G+ +I+ + LE A +GRL IL
Sbjct: 475 ILSDILGDEDHLGDMDFKVAGTSTGVTAIQMDIKITGVTREIMGKALEQAKEGRLHILGK 534
Query: 599 MEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLT 657
M ++APRT +PR+ T+ D +R +IG G R I E TG I + D G +
Sbjct: 535 MAEALAAPRTDLSPYAPRITTIWVKTDKIRDVIGAGGKNVRGITEATGVSIDIEDTGKIN 594
Query: 658 VVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELS 717
+ + N+ +K ++ + + E E G +Y G V V ++GAFVE G GL+H+SEL
Sbjct: 595 IASTNKEACDKAIKMIRDLTA-EAEEGKLYMGTVRKVMDFGAFVEIFPGTDGLVHISELD 653
Query: 718 HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V V+D++ G ++ ++CIG D +G IKLS K
Sbjct: 654 TERVKDVTDILKEGDKVLVKCIGIDKQGKIKLSRK 688
>sp|Q3A4A1|PNP_PELCD Polyribonucleotide nucleotidyltransferase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=pnp PE=3
SV=1
Length = 699
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 295/698 (42%), Positives = 452/698 (64%), Gaps = 19/698 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRD---FLPLTVDY 116
K E + + +TLETGK+AR A+GAVV+ TKVL T S+K +R+ F PLTV+Y
Sbjct: 5 KVECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAK--QMREGQSFFPLTVNY 62
Query: 117 QEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGK 176
QEK +A G IP ++ RRE ERE LV R+IDRP+RPLFP G+ E Q+M +V+S D +
Sbjct: 63 QEKFYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQ 122
Query: 177 QDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTR 236
DPD +A SAA+ +SDIP+ GP+ +R+GR+ G I NPT+++ + SD++++ + +R
Sbjct: 123 NDPDTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSGSR 182
Query: 237 EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTL 296
+ +M++ + R ISE+++ L AH ++ Q+ L + AGK+K+E+ + I +
Sbjct: 183 DAIIMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKEKREFSVPEIDPAVV 242
Query: 297 EKVSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTV 355
EKV+ LAE + EAV +K +R A+ +I ++ + L + +++ + +A +
Sbjct: 243 EKVAELAETRLSEAV---KIRTKQDRYAAVAEIKTEILETLAADFEDQEDDI-SEAFGNL 298
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+KR++R+ + + VR+DGR + +RPI CE G LP HGS+LF+RG+TQ L LG
Sbjct: 299 QKRLVRQMVARDKVRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSK 358
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ QR++++ K+FMLHY+FPPFC+ E R+ RRE+GHG LAE+++ VLP +D
Sbjct: 359 DEQRMDNVQSMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDD 418
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV S+++ S+GS+SMA+VCG S+ALMDAG+P+ E VAG+++GL+ E D
Sbjct: 419 FPYTLRVVSDILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGD------- 471
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
D +L+DILG EDHLGDMDFK+ GTR G+TA+Q+DIK G+ +I+ + LE A +GRL I
Sbjct: 472 DIVVLSDILGDEDHLGDMDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHI 531
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDG 654
LD M I+APR+ +PR+ T++ D +R +IGP G R I E TG I + DG
Sbjct: 532 LDKMAEAITAPRSDLSPYAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGCAIDIEDDG 591
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + + ++ + + +E VG +Y V + E+GAFVE G +GL+H+S
Sbjct: 592 RINIASADGDACKAAIKMIRNLT-QEAVVGKLYMATVKKIMEFGAFVEIFPGTEGLVHIS 650
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
EL+ E V +V+D++ G Q+ ++C+ D +G IKLS K
Sbjct: 651 ELAKERVKKVTDILQEGDQVLVKCLDIDRQGKIKLSRK 688
>sp|C5D9D5|PNP_GEOSW Polyribonucleotide nucleotidyltransferase OS=Geobacillus sp.
(strain WCH70) GN=pnp PE=3 SV=1
Length = 712
Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/703 (42%), Positives = 453/703 (64%), Gaps = 14/703 (1%)
Query: 56 LETFKEEFEI--GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLT 113
+E K F I R + +E G++A+ ANGAV++ +T VL+T T+SK DF PLT
Sbjct: 1 MEQEKRIFSIDWAGRPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKNVDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+Y+E+ +A G IP +++REG P E+ +L R+IDRPIRPLF GF +EVQ+++ V+S
Sbjct: 61 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D P++ A S AL +SDIP+ GPI + +GR+ G+F++NPT+++ SD++LV A
Sbjct: 121 DQDCSPEMAALFGASLALTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDIHLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T++ M++ A E+ E+ + + H E + + Q +A + GK+K E L +
Sbjct: 181 GTKDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYELDP 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDV-KKALEEECDEESLQVLPKAV 352
Q ++ LAE I+ P K R A++++ V K E+E DEE+L+ + + +
Sbjct: 241 QLEAEIRQLAEEDIKRAVQVPE--KLARDAAIEEVKASVIAKYEEQEADEETLKQVNEIL 298
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ K +R+ I E +R DGR++DE+RP+ E G LP HGS LF+RG TQVL TLG
Sbjct: 299 HKLVKEEVRRLITEEKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLG 358
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
A + Q L+ L TKRFM HY+FPPF + E G G RRE+GHG L E+AL V+P
Sbjct: 359 ALGDVQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPS 418
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
E +FPYT+R+ SEV+ S+GSTS A++C ++A+MDAG+P++ VAG+++GLV D
Sbjct: 419 EKEFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDD---- 474
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+Y ILTDI G+EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ E L+ A KGR
Sbjct: 475 ---NYTILTDIQGIEDHLGDMDFKVAGTAKGVTALQMDIKIKGLSREILEEALQQAKKGR 531
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
++IL+HM + I PR + + +P++ T++ + + +R +IGP G KI +ETG +I +
Sbjct: 532 MEILEHMMQTIREPRKELSKYAPKILTMQINPEKIREVIGPSGKQINKIIDETGVKIDIE 591
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + + N ++ +K + ++ I+ RE+EVG IY G V ++++GAFVE G+ GL+
Sbjct: 592 QDGTIFISSVNEAMNQKAKQIIEDIV-REVEVGQIYLGKVKRIEKFGAFVELFNGKDGLV 650
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
H+SEL+ E V RV DVVS+G ++ ++ + D +G + LS KAV
Sbjct: 651 HISELAEERVGRVEDVVSIGDEILVKVMEIDKQGRVNLSRKAV 693
>sp|Q21H65|PNP_SACD2 Polyribonucleotide nucleotidyltransferase OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pnp
PE=3 SV=1
Length = 722
Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/723 (42%), Positives = 449/723 (62%), Gaps = 26/723 (3%)
Query: 48 PSVAGTKVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSV 106
PS KV K+ F+ G+ +TLETG+IAR A+GAV+ M +T VL VT SK
Sbjct: 6 PSQKDKKVNPVIKK-FQYGNDTVTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPG 64
Query: 107 RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQV 166
+DF PL+V YQEK +A G IP + +RE P E+E L R+IDRPIRPLFP GF +EVQV
Sbjct: 65 QDFFPLSVHYQEKAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFLNEVQV 124
Query: 167 MASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRIC-GQFIVNPTMDELSL 225
+ +V+S++ DPDI+A TSAAL +S IP+ GPIG R+G +++NPT L
Sbjct: 125 VCTVISAEKDVDPDIVAMIGTSAALAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKT 184
Query: 226 SDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKE 285
S+L++V A T + LM++ +A+E+ E + + AH E ++ LA+ A K +
Sbjct: 185 SELDMVVAGTADAVLMVESEAKELPEDIMLGAVLYAHQEMQAVVQAVAELAKDAAKPVWD 244
Query: 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDP---SYSKFERGEALDKIGQDVKKALEEECDE 342
+K E+V+ +A +E F D +Y ++ + D++ + +A+ E E
Sbjct: 245 WKP--------EEVNAELKAKVEHGFADSVGVAYRITDKQKRYDRLSELRNQAVAELATE 296
Query: 343 ES---LQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFS 399
ES + + K+++R R++A R+DGR VRP++ E G LP +HGS+LF+
Sbjct: 297 ESGVSADEVKGLFAKIEKQIVRSRVVAGEPRIDGRDSKTVRPLHVEVGVLPKVHGSALFT 356
Query: 400 RGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHG 459
RG+TQ L TLG+ +AQ +++L G FMLHY+FPP+ + E G+ RRE+GHG
Sbjct: 357 RGETQALVVSTLGSARDAQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHG 416
Query: 460 TLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGV 519
LA + + AVLP E DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+
Sbjct: 417 RLARRGIGAVLPKEEDFPYTMRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGI 476
Query: 520 SVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLD 579
++GLV E + + +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +
Sbjct: 477 AMGLVKEDN-------GFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIEGITEE 529
Query: 580 IICECLEHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKR 639
I+ L A RL IL M R I++PR + N+P+ T+K D D +R +IG GA R
Sbjct: 530 IMEIALGQAMDARLHILAEMNRVIASPRKELSENAPQFHTMKIDPDKIRDIIGKGGATIR 589
Query: 640 KIEEETGGRISVSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYG 698
I EETG I + D GT+ + A + M+ + +++ I E E+G +Y+G V + ++G
Sbjct: 590 SITEETGASIDIDDNGTIKIYADDGDGMQAAIARIEEITA-EAEIGAVYQGKVVRIVDFG 648
Query: 699 AFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758
AFV F G+ GL+H+S+++HE V VSD + GQ + ++C+ D RG IKLS+K + P P
Sbjct: 649 AFVNFLPGKDGLVHISQIAHERVQNVSDYLKEGQDIEVKCMDIDQRGRIKLSIKELLPAP 708
Query: 759 EAD 761
EA+
Sbjct: 709 EAE 711
>sp|Q6D9A1|PNP_ERWCT Polyribonucleotide nucleotidyltransferase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=pnp PE=3 SV=1
Length = 706
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 295/707 (41%), Positives = 447/707 (63%), Gaps = 12/707 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + PDI+A SAAL LS IP+ GPIG+ R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T+ LM++ +A +SE + + H + +E L +AGK K E+ ++
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER ++ I DV AL+ E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVNVIKTDVVAALQAEDETLNAGEIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
+ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NIEKNVVRGRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
N+FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 NEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVRIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K +P+ +
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANPQTQ 697
>sp|B4RC48|PNP_PHEZH Polyribonucleotide nucleotidyltransferase OS=Phenylobacterium
zucineum (strain HLK1) GN=pnp PE=3 SV=1
Length = 715
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/703 (42%), Positives = 453/703 (64%), Gaps = 22/703 (3%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQE 118
++ E G + +TLETG++AR A+GAV+ ET VL+T +K +DF PLTV+YQE
Sbjct: 6 RKTIEWGGKTLTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP ++ RREGAP ++E L R+IDRPIRPLF GF +EVQV+ +VL+ D + D
Sbjct: 66 KFYAAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI+A A SAAL+LS +P+ GPI R+G + G++++NPT+DE+ S ++LV A T E
Sbjct: 126 PDIVAMVAASAALVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMDLVVAGTAEA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
+M++ + +E++E+ + G+ AH ++ I LAE + K+ +++ +++ K
Sbjct: 186 VMMVESEIKELTEEQVLGGVTFAHKGMQPVIDAIIELAEHSAKEPFDFQPDD-TDEIAAK 244
Query: 299 VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKAL----EEECDEESLQV--LPKAV 352
V +L + A + K ER A IG +KA+ + E + E L
Sbjct: 245 VKDLIGGDLRAAYQ--ITGKSERHAA---IGAAKEKAMTAFAKSEANPEGYDANKLGGVF 299
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
+ ++R+ I+ G R+DGR +D+VRPI E G LP HGS+LF+RG+TQ LC TLG
Sbjct: 300 KEIEADIVRRSILETGKRIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLG 359
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q +++L G ++FMLHY+FPPF + E G+ RREVGHG LA +AL +LP
Sbjct: 360 TGDDEQLIDALEGKYFEKFMLHYNFPPFSVGETGRMGSPGRREVGHGKLAWRALRPMLPS 419
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
+FPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL++ V+G+++GL+ E D
Sbjct: 420 YEEFPYTIRIVSEIFESNGSSSMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKD---- 475
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +L+DILG EDHLGDMDFK+AGT G+T++Q+DIK AGI +I+ + LE A GR
Sbjct: 476 ---GFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGR 532
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS 652
IL M + ++APR + +P++ T+K D +R +IG G + R+I E+TG +I +
Sbjct: 533 DHILAEMNKAMTAPRAELGEFAPKIETIKIPVDKIREVIGSGGKVIREIVEKTGAKIDIG 592
Query: 653 -DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ + A ++ ++ E + I E EVG IY G V + ++GAFV F G + GL+
Sbjct: 593 EDGTIKIAAAEQTKIDAAKEWIKS-IASEPEVGQIYTGKVVKIVDFGAFVNFFGAKDGLV 651
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
HVS++S+E V++VSDV++ GQQ+ ++ +G D RG +LS+K V
Sbjct: 652 HVSQISNERVAKVSDVLTEGQQVKVKLLGFDDRGKTRLSMKVV 694
>sp|B8EP09|PNP_METSB Polyribonucleotide nucleotidyltransferase OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=pnp
PE=3 SV=1
Length = 714
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/705 (44%), Positives = 454/705 (64%), Gaps = 17/705 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ E +EE + R +TLETG+IAR A+GAV+ ET VL+TV S++ DF PLT
Sbjct: 1 MFEIHREELDWAGRKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK FA G IP Y +REG P E+E LV R+IDRPIRPLFP G+ ++ QV+ +VLS
Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI+A ATSAAL +S IP+ GP+G R+G I G +NPT+DEL S L+LV A
Sbjct: 121 DLENDPDILALVATSAALTISGIPFMGPVGGARVGYINGALKLNPTVDELKESALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE + + H ++ IRLAEKA K+ +E L++ +
Sbjct: 181 GTGDAVLMVESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKAAKEPRE--LAVADK 238
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEE--SLQVLPK 350
+E V ++AE + + +K ER +A+D + V AL E E S + + +
Sbjct: 239 AEVEAAVRDIAEGELREAYK--ITAKQERYKAVDAVKAKVALALFPEDAEPRFSKEKVAE 296
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A ++ +V+R I+ GVR+DGR L VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 297 AFHDLQAKVVRWNILDLGVRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVAT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q ++SL G +RF+LHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 357 LGTGEDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPML 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +FPYT+R+ SE+ S+GS+SMATVCG S+ALMDAG+PL+ AG+++GL+ E
Sbjct: 417 PTAAEFPYTIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILE---- 472
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE + +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A
Sbjct: 473 -GE--RFAVLSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKVAGITEEIMKVALDQAKG 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M + ++ R + +PR+ TLK D +R +IG G + R+I E+TG +I+
Sbjct: 530 GRLHILGEMSKALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKIN 589
Query: 651 V-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ DGT+ V + + + ++ + + I + EVG IY+G V V ++GAFV F G + G
Sbjct: 590 IEDDGTVKVASSDGNSIKAAIAWIKS-IANDPEVGQIYEGTVVKVVDFGAFVNFFGSKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
L+H+S+L+ V++ SDVV G+++ ++ +G D RG ++LS++ V
Sbjct: 649 LVHISQLAKGRVAKSSDVVKEGEKVKVKLLGFDDRGKVRLSMRYV 693
>sp|B0UEX5|PNP_METS4 Polyribonucleotide nucleotidyltransferase OS=Methylobacterium sp.
(strain 4-46) GN=pnp PE=3 SV=1
Length = 725
Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/713 (43%), Positives = 451/713 (63%), Gaps = 17/713 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLT 113
+ +T +EE G R + LETGK+AR A+GAVV ET VL+TV S K DFLPLT
Sbjct: 1 MFDTQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS
Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPDI++ A SAAL LS +P+ GPIG R+G + GQ+ +NPT+ E+ S L+LV A
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+E+ E + + H +E IRLAEKA K+ ++++ + ++E
Sbjct: 181 GTDAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLTE 240
Query: 294 QTLEK-VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ--VLPK 350
+EK V + EA + + K ER A+D + V AL E E + +
Sbjct: 241 --VEKAVLEIGEADLREAYR--KTVKQERYAAVDAVKAKVMAALVPEGGEAKFEPEKVKA 296
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
A V+ +V+R I+ G R+DGR + VRPI E G LP HGS+LF+RG+TQ L T
Sbjct: 297 AFKEVQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVAT 356
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +L
Sbjct: 357 LGTGDDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLL 416
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
PP ++FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E
Sbjct: 417 PPAHEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILE---- 472
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE Y +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A +
Sbjct: 473 -GE--RYAVLSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKE 529
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GR IL M + ++A R + ++PR+ T++ D +R +IG G + R+I E+TG +I
Sbjct: 530 GRAHILGEMAKALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKID 589
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D G + + + + ++ + I+ E E G IY G V E+GAFV F G + G
Sbjct: 590 IQDTGVVKIASSDGKAIKAAYNWIRSIVA-EPEAGMIYDGTVVKTMEFGAFVNFFGAKDG 648
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
L+H+SEL+ + V++V+DVV G ++ ++ +GQD RG I+LS+K V + D+
Sbjct: 649 LVHISELAPQRVAKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDL 701
>sp|A8IGA3|PNP_AZOC5 Polyribonucleotide nucleotidyltransferase OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=pnp PE=3 SV=2
Length = 724
Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust.
Identities = 304/709 (42%), Positives = 452/709 (63%), Gaps = 23/709 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLT 113
+ + +EE + G R + LETGK+AR A+GAV +T VL+TV S++ +DF PLT
Sbjct: 1 MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQEK +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VL+
Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
D + DPD+++ A SAAL LS +P+ GPIG R+G + ++++NPT++EL S L+LV A
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T + LM++ +A+E+SE+ + + H +E IRLAEKA K+ + ++ +
Sbjct: 181 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFE--PVDH 238
Query: 294 QTLE-KVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAV 352
LE K+ +AEA + A + K R EA+ VKK E+ + Q PKA
Sbjct: 239 SALEAKIREIAEADLRAAYK--IKQKQARYEAVGAAKSKVKKYFEQLAIDG--QEAPKAQ 294
Query: 353 DT------VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVL 406
D + +++R I+ +G+R+DGR + VRPI E G LP HGS+LF+RG+TQ L
Sbjct: 295 DVAEVLKGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQAL 354
Query: 407 CTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKAL 466
TLG + Q ++SL G + F+LHY+FPPF + E G+ RRE+GHG LA +A+
Sbjct: 355 VVATLGTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAI 414
Query: 467 LAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526
+LP +++FPYT+RV SE++ S+GS+SMATVCG S++LMDAG+PL+ VAG+++GL+ E
Sbjct: 415 HPMLPAKHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILE 474
Query: 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLE 586
GE + +L+DILG EDHLGDMDFK+AGT GVTA+Q+DIK AGI +I+ L
Sbjct: 475 -----GE--KFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALA 527
Query: 587 HAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETG 646
A GR IL M + +++ R + ++PR+ +K D +R +IG G + R+I E+TG
Sbjct: 528 QAKDGRAHILGEMSKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTG 587
Query: 647 GRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNG 705
+I++ DGT+ + + + ++ + + I E EVG IY G V V ++GAFV F G
Sbjct: 588 AKINIEDDGTIKIASASGDSIKAAINWIKS-IASEPEVGAIYDGTVVKVVDFGAFVNFFG 646
Query: 706 GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ GL+H+S+LS E V++ SDVV G ++ ++ +G D RG +LS+KAV
Sbjct: 647 SKDGLVHISQLSKERVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAV 695
>sp|A5GF91|PNP_GEOUR Polyribonucleotide nucleotidyltransferase OS=Geobacter
uraniireducens (strain Rf4) GN=pnp PE=3 SV=1
Length = 696
Score = 555 bits (1430), Expect = e-157, Method: Compositional matrix adjust.
Identities = 302/703 (42%), Positives = 439/703 (62%), Gaps = 22/703 (3%)
Query: 56 LETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTV 114
+ET K + E G R IT+ETGK+A+ A+GAVV+ +T VL T ++K +DF PLTV
Sbjct: 1 MET-KVQVEFGGRTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTV 59
Query: 115 DYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSD 174
+YQEK +A G IP + +RE P + E L R+IDRPIRPLFP F ++ Q+MA+V+S+D
Sbjct: 60 NYQEKAYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSAD 119
Query: 175 GKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYAC 234
DP I++ SAALM+SDIP+ GPI +++GR+ G+FI NPT DE+ SD+ +V A
Sbjct: 120 KDNDPGILSMVGASAALMVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSDIEIVVAA 179
Query: 235 TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQ 294
+++ +M++ A E+SE+D+ + H L Q L KAG K+E ++E+
Sbjct: 180 SKDAVIMVEGSAAEVSEEDMLEAIFFGHAAIQPLLAAQEELCSKAGVAKREVPPPAVNEE 239
Query: 295 TLEKVSNLAEAHI-EAVFTDPSYSKFERGEALDKIGQDVKKALEEE---CDEESLQVLPK 350
V ++A A + EAV SK ER ++D I + AL E CD++ +
Sbjct: 240 LKANVKDIAYARMKEAVRIK---SKVERHNSIDAISAETLAALATEFEGCDKQ----IKA 292
Query: 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVT 410
+ ++R+ I+ +G R+DGR +R I E LP HGS+LF+RG+TQ L T
Sbjct: 293 FLGDFEYELVREHILKDGERIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAAT 352
Query: 411 LGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVL 470
LG + QR++SL G KRF+LHY+FPPF + E R+G RRE+GHG LAE+AL VL
Sbjct: 353 LGTSIDEQRIDSLFGESKKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVL 412
Query: 471 PPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530
P +DFPYT+R+ S+++ S+GS+SMA+VCGGSM++MDAGIP++ VAG+++GL+ E
Sbjct: 413 PKHDDFPYTIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKE---- 468
Query: 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHK 590
GE D+ IL+DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L+ A +
Sbjct: 469 -GE--DFAILSDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGIALKQALE 525
Query: 591 GRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRIS 650
GRL IL M I ++ +PR+ T+ D +R +IG G R I E TG I
Sbjct: 526 GRLHILGRMADTIKTSKSDLSTYAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTID 585
Query: 651 VSD-GTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQG 709
+ D G + + + +++ + ++ + + E E G +Y G+V V E+GAFVE G G
Sbjct: 586 IDDTGKINIASTDKAACDLAIKMIRDLTA-EAEEGKLYMGLVKKVMEFGAFVEIFPGTDG 644
Query: 710 LLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
L+H+SEL E V V+D++ G ++ ++CIG D +G IKLS K
Sbjct: 645 LVHISELDTERVKNVTDILKEGDKVLVKCIGIDKQGKIKLSRK 687
>sp|B8F492|PNP_HAEPS Polyribonucleotide nucleotidyltransferase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=pnp PE=3 SV=1
Length = 709
Score = 555 bits (1430), Expect = e-157, Method: Compositional matrix adjust.
Identities = 295/694 (42%), Positives = 441/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K + +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E LS L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A ++E+ + A + H + +E ++AGK + ++ + + KV
Sbjct: 186 LMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA + + K R E +D I DV L E + S + + + ++
Sbjct: 246 KALAEARLGDAYR--ITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS+LF+RG+TQ L TLG +AQ
Sbjct: 304 VRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR++ +PR+ T+K D ++ +IG GA R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + ++V+E+++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S+++
Sbjct: 597 AATDNNAAKRVMERIEEIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITD 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V RV+D +SVGQ + ++ + + +G I+L++K
Sbjct: 656 ARVERVADYLSVGQDVQVKVVEIERQGRIRLTMK 689
>sp|B9KYR9|PNP_THERP Polyribonucleotide nucleotidyltransferase OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=pnp PE=3 SV=1
Length = 790
Score = 555 bits (1429), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/708 (44%), Positives = 453/708 (63%), Gaps = 29/708 (4%)
Query: 63 FEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR--DFLPLTVDYQEKQ 120
EI RL+T+ETG++A A+GAV++ ET VL+TV +K V DF PLTV+Y+EK
Sbjct: 10 IEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAK-QPVEGIDFFPLTVEYEEKM 68
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP + RREG P E +L R+ DRPIRPLFP G+ +EVQV+++VLS+D + +PD
Sbjct: 69 YAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPD 128
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
+++ SAAL LSDIPW GP+G +RIG + G+ ++NPT +L S +++V A T + L
Sbjct: 129 VLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTADAIL 188
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ QA EISE + AH E + + Q+ L AGK K+E+ + + ++++
Sbjct: 189 MVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQENVELKQQIA 248
Query: 301 N-LAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV------LPKA-- 351
+ L + EAVF + + AL + + + E L + LP A
Sbjct: 249 DYLGDRLREAVFNPDKTLRVQATAALRE------EVIAHFVPNEPLAIGTPQSGLPTAKE 302
Query: 352 ----VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLC 407
D++ K ++R+ I+ +G R DGR+ DE+R I+ + G LP HGS+LF+RG TQVL
Sbjct: 303 VGDLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLT 362
Query: 408 TVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALL 467
TLG E Q L+SL TKR+M HY+FPPF E+ + G +RR++GHG LAE+ALL
Sbjct: 363 VCTLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALL 422
Query: 468 AVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEV 527
AVLP E++FPYT+R+ SEV++S+GSTSMA+VCG S+ALMDAG+P+++ VAGV++GLV+
Sbjct: 423 AVLPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVT-- 480
Query: 528 DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEH 587
D +TG Y ILTDI G+ED LGDMDFK+AGTR G+TAIQ+DIK GI +I+ + LE
Sbjct: 481 DQTTGR---YTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQ 537
Query: 588 AHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGG 647
A +GRL ILD M I APR + +PR+ +K + + +IGP G + R I+E+TG
Sbjct: 538 ARRGRLFILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGT 597
Query: 648 RISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGG 706
+IS+ DGT+ + A N + + +++ + R EVG I+ G V ++ GAFVE G
Sbjct: 598 KISIEEDGTVFISAANEDAARRAVREIERLT-RVPEVGEIFYGRVVTIIPSGAFVEILPG 656
Query: 707 QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754
+ G LH+SE++ E V V DV+ VGQ++++ IG G I LS KA+
Sbjct: 657 KDGFLHISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKAL 704
>sp|A7MIN6|PNP_CROS8 Polyribonucleotide nucleotidyltransferase OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=pnp PE=3 SV=2
Length = 711
Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/708 (42%), Positives = 449/708 (63%), Gaps = 25/708 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
++YQE+ +A G IP + RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +E
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEE------CDEESL 345
+V LAE+ + + TD K ER +D I DV AL+ E DE L
Sbjct: 241 ALNARVKALAESRLSDAYRITD----KQERYSQIDAIKADVIAALQAEQAEGDALDENEL 296
Query: 346 QVLPKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQV 405
+ A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ
Sbjct: 297 GDILHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 353
Query: 406 LCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKA 465
L T TLG +AQ ++ L+G T RF+ HY+FPP+ + E G RRE+GHG LA++
Sbjct: 354 LVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 413
Query: 466 LLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVS 525
+LAV+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV
Sbjct: 414 VLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 473
Query: 526 EVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECL 585
E GE ++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L
Sbjct: 474 E-----GE--NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVAL 526
Query: 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEET 645
A RL IL ME+ I+APR + +PR+ T+K D ++ +IG G++ R + EET
Sbjct: 527 NQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEET 586
Query: 646 GGRISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFN 704
G I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV
Sbjct: 587 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIG 645
Query: 705 GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
GG++GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 693
>sp|Q66F56|PNP_YERPS Polyribonucleotide nucleotidyltransferase OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=pnp
PE=3 SV=1
Length = 704
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/702 (42%), Positives = 445/702 (63%), Gaps = 13/702 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
V +V+D + +GQ + ++ + D +G I+LS+K A +P EA
Sbjct: 658 RVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTPDAEA 699
>sp|B2K2Q9|PNP_YERPB Polyribonucleotide nucleotidyltransferase OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=pnp
PE=3 SV=1
Length = 704
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/702 (42%), Positives = 445/702 (63%), Gaps = 13/702 (1%)
Query: 62 EFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQ 120
+F+ G +T+ETG +AR A AV++ MD+T V TV K + F PLTV+YQE+
Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67
Query: 121 FAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 180
+A G IP ++ RREG P E E L R+IDRPIRPLFP F +EVQV+A+V+S + + +PD
Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127
Query: 181 IMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTL 240
I+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A T L
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187
Query: 241 MIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVS 300
M++ +A +SE+ + + H + +E L +AGK K +++ ++E +V+
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247
Query: 301 NLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVI 360
LAEA + + K ER +D I DV +AL + D + + +V K V+
Sbjct: 248 ELAEARLGDAYR--ITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVV 305
Query: 361 RKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRL 420
R R++ R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG +AQ +
Sbjct: 306 RSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNI 365
Query: 421 ESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTV 480
+ L+G T F+LHY+FPP+C+ E G RRE+GHG LA++ +LAV+P ++FPYT+
Sbjct: 366 DELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTI 425
Query: 481 RVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIL 540
RV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D ++ +L
Sbjct: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NFVVL 478
Query: 541 TDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHME 600
+DILG EDHLGDMDFK+AG+R GVTA+Q+DIK GI +I+ L A RL IL ME
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVME 538
Query: 601 REISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTVV 659
+ IS PR +PR+ T+K + + ++ +IG G++ R + +ETG I + DGT+ +
Sbjct: 539 QAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIA 598
Query: 660 AKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE 719
A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL+H+S+++ +
Sbjct: 599 ATDGDKAKHAIRRIEEITA-EIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657
Query: 720 PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
V +V+D + +GQ + ++ + D +G I+LS+K A +P EA
Sbjct: 658 RVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTPDAEA 699
>sp|A8AQ53|PNP_CITK8 Polyribonucleotide nucleotidyltransferase OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=pnp
PE=3 SV=2
Length = 711
Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 449/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + AL +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIAALVAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPEMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
++ +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR + +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>sp|B3PIA0|PNP_CELJU Polyribonucleotide nucleotidyltransferase OS=Cellvibrio japonicus
(strain Ueda107) GN=pnp PE=3 SV=1
Length = 710
Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust.
Identities = 302/701 (43%), Positives = 437/701 (62%), Gaps = 25/701 (3%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSV-RDFLPLTVDYQEK 119
++F+ G++ +TLETG+IAR A GAV++ + E VL TV +K S +DF PL+V YQEK
Sbjct: 6 KKFQYGNQTVTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEK 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP Y +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +V+S+D KQDP
Sbjct: 66 AYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTDKKQDP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTREK 238
DI A TSAAL +S IP+ GPIG R+G G+ +I+NP+ +L S+L++V A T++
Sbjct: 126 DIAAMIGTSAALAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSELDMVVAGTKDA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+ E + + H E ++ LA AGK + +++ + E T K
Sbjct: 186 VLMVESEAKELPEDIMLGAVLYGHQEMQAVIQACAELARDAGKARWDWQ--PVPENTELK 243
Query: 299 VSNLAEAHIEAVF---TDPSYSKFERGEALDKIGQDVKKALEEECDEES---LQVLPKAV 352
+ I+A F +Y ++ E +++G+ +A+ + EES +
Sbjct: 244 TA------IKAAFGVAIGDAYRITDKAERYNRLGELRSEAVAQFATEESGISADAVKSLF 297
Query: 353 DTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG 412
T+ ++R RI+A R+DGR VRPI + G LP HGS+LF+RG+TQ L TLG
Sbjct: 298 GTLEYNIVRSRIVANEPRIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLG 357
Query: 413 APAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPP 472
+ Q ++ L G + F+LHY+FPP+ + E G+ RRE+GHG LA++ + AVLP
Sbjct: 358 NARDVQIIDQLEGEKKEAFLLHYNFPPYSVGECGRMGSTGRREIGHGRLAKRGVQAVLPK 417
Query: 473 ENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532
FPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV E +
Sbjct: 418 AESFPYTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDN---- 473
Query: 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGR 592
+ +LTDILG EDHLGDMDFK+AGT GVTA+Q+DIK GI +I+ LE A R
Sbjct: 474 ---GFAVLTDILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAAR 530
Query: 593 LQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV- 651
L IL M + +S RT N+PR T+K D +R +IG GA R I EET I +
Sbjct: 531 LHILGEMNKVLSQSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETNSSIDID 590
Query: 652 SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLL 711
DGT+ V A + ++ L ++ I+ E E+G IY+G V + ++GAFV F G+ GL+
Sbjct: 591 DDGTVKVYADDNEALQAALNRIGAIVA-EAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLV 649
Query: 712 HVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
H+S+++ E V+ VSD + GQ + ++C+ D RG IKLS+K
Sbjct: 650 HISQIADERVNNVSDYLKEGQVVKVKCLDVDQRGRIKLSIK 690
>sp|B8IGX3|PNP_METNO Polyribonucleotide nucleotidyltransferase OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=pnp PE=3 SV=1
Length = 725
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/708 (43%), Positives = 445/708 (62%), Gaps = 17/708 (2%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVR-DFLPLTVDYQE 118
+EE G R + LETGK+AR A+GAVV ET VL+TV S K DFLPLTV+YQE
Sbjct: 6 REELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLTVNYQE 65
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
+ +A G IP Y +REG P E+E LV R+IDRPIRPLF G+ ++ QV+ +VLS D + D
Sbjct: 66 RAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLEND 125
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK 238
PDI++ A SAAL LS +P+ GPIG R+G + Q+ +NPT+ E+ S L+LV A T
Sbjct: 126 PDIVSMVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVAGTEAA 185
Query: 239 TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEK 298
LM++ +A+E+ E + + H +E IRLAEKA K+ ++++ + +SE +EK
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLSE--VEK 243
Query: 299 -VSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQ--VLPKAVDTV 355
V + EA + + K ER A+D + V AL E E + + A V
Sbjct: 244 AVLEIGEADLREAYK--KTVKQERYAAVDAVKAKVMAALAPEEGEAKFEPETVKAAFKEV 301
Query: 356 RKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPA 415
+ +V+R I+ G R+DGR + VRPI E G LP HGS+LF+RG+TQ L TLG
Sbjct: 302 QAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGD 361
Query: 416 EAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPEND 475
+ Q +++L G + F+LHY+FPP+ + E G+ RRE+GHG LA +A+ +LP ++
Sbjct: 362 DEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAAHE 421
Query: 476 FPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 535
FPYT+RV SE+ S+GS+SMATVCG S+ALMDAG+PL+ VAG+++GL+ E GE
Sbjct: 422 FPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILE-----GE-- 474
Query: 536 DYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQI 595
+ +L+DILG EDHLGDMDFK+AGT GVT++Q+DIK AGI +I+ L+ A GR I
Sbjct: 475 RFAVLSDILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHI 534
Query: 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G 654
L M + ++A R + ++PR+ T++ D +R +IG G + R+I E+TG +I + D G
Sbjct: 535 LGEMAKALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTG 594
Query: 655 TLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVS 714
+ + + + ++ + I+ E E G IY G V E+GAF+ F G + GL+H+S
Sbjct: 595 VIKIASSDAKAIKAAYNWIRSIVA-EPEAGMIYDGTVVKTMEFGAFINFFGAKDGLVHIS 653
Query: 715 ELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762
EL+ + V++V+DVV G ++ ++ +GQD RG I+LS+K V + D+
Sbjct: 654 ELAPQRVAKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDI 701
>sp|C6E2P5|PNP_GEOSM Polyribonucleotide nucleotidyltransferase OS=Geobacter sp. (strain
M21) GN=pnp PE=3 SV=1
Length = 696
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/692 (43%), Positives = 429/692 (61%), Gaps = 15/692 (2%)
Query: 64 EIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLTVDYQEKQFA 122
E + IT+ETGKIA+ A+GAV++ +T VL T + K + F PLTV+YQEK +A
Sbjct: 8 ECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYA 67
Query: 123 QGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIM 182
G IP ++ +REG P + E L R+IDRPIRPLFP GF ++ QVMA+V+S+D DP I+
Sbjct: 68 GGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDNDPAIL 127
Query: 183 AANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKTLMI 242
+ SAALM+SD P+ GPI +++GR+ G FI NPT +EL SDL +V A ++E LM+
Sbjct: 128 SMIGASAALMVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLEIVIAASQEAILMV 187
Query: 243 DVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKVSNL 302
+ A E+SE DL + H L Q+ LA+K G K+ +++E+ +V+ L
Sbjct: 188 EGSAAEVSENDLLEAIFFGHAAVQPILAAQLELAKKVGTPKRVILAPVVNEELKARVAAL 247
Query: 303 A-EAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIR 361
A E +AV +K ER A+D I + AL E E S + + ++ + ++R
Sbjct: 248 AKEGMKQAVRIK---TKVERHLAIDAITAETVAALAAEF-EGSEKEVKGFIEDLEYDLVR 303
Query: 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLE 421
+ II +G R+DGR +R I E LP HGS+LF+RG+TQ + TLG + QR++
Sbjct: 304 EHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRID 363
Query: 422 SLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVR 481
SL G K+FMLHY+FPP+ + E R+ RRE+GHG LAE+AL VLP +DFPYT+R
Sbjct: 364 SLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIR 423
Query: 482 VNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRILT 541
+ S++ S+GS+SMATVCGGS+++MDAGIP++ VAG+++GL+ E D D+ IL+
Sbjct: 424 IVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGD-------DFAILS 476
Query: 542 DILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601
DILG EDHLGDMDFK+AGT GVTA+Q+DIK G+ +I+ L A GR+ IL M +
Sbjct: 477 DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAK 536
Query: 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-GTLTVVA 660
I+A R +PR+ T+ D +R +IG G R + E TG I + D G + + +
Sbjct: 537 TIAASRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIAS 596
Query: 661 KNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP 720
N+ + ++ + + E E G +Y G V + E+GAFVE G GL+HVSEL E
Sbjct: 597 TNKEACDLAIKMIRNLTA-EAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTER 655
Query: 721 VSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
V VSD++ G ++ ++CIG D +G IKLS K
Sbjct: 656 VKNVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687
>sp|B3GXC1|PNP_ACTP7 Polyribonucleotide nucleotidyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=pnp PE=3
SV=2
Length = 715
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>sp|A3MZU3|PNP_ACTP2 Polyribonucleotide nucleotidyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=pnp PE=3
SV=1
Length = 715
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>sp|C6DKK7|PNP_PECCP Polyribonucleotide nucleotidyltransferase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=pnp PE=3
SV=1
Length = 706
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 297/709 (41%), Positives = 447/709 (63%), Gaps = 13/709 (1%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV +K + F PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G P + RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G + Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + +E L +AGK K ++ ++
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWHAPEVNV 240
Query: 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVD 353
++V L+EA + + K ER +D I DV+ AL E + + + + +
Sbjct: 241 SLEQRVQALSEARLGDAYR--ITEKQERYAQVDVIKADVEAALLAEDETLNAGEIQEILG 298
Query: 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 413
V K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TLG
Sbjct: 299 NVEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 414 PAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 473
+AQ ++ L G T RF+LHY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 359 ERDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKA 418
Query: 474 NDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533
++FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 419 SEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGD----- 473
Query: 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593
++ +L+DILG EDHLGDMDFK+AG+R G+TA+Q+DIK GI +I+ L A RL
Sbjct: 474 --NFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARL 531
Query: 594 QILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-S 652
IL ME+ IS PR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 532 HILGVMEQAISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIED 591
Query: 653 DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 712
DGT+ + + + + + +++ I EIEVG +Y+G VT + ++GAFV GG++GL+H
Sbjct: 592 DGTVKIASTDGEKAKHAIRRIEEITA-EIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH 650
Query: 713 VSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK-AVSPRPEA 760
+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K A +P EA
Sbjct: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPTQEA 699
>sp|B0BUD5|PNP_ACTPJ Polyribonucleotide nucleotidyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=pnp PE=3
SV=1
Length = 715
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 292/694 (42%), Positives = 439/694 (63%), Gaps = 12/694 (1%)
Query: 61 EEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEK 119
++F+ G +TLETG IAR A AV+ MD+T V TV + K +DF PLTVDYQE+
Sbjct: 6 KQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQER 65
Query: 120 QFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDP 179
+A G IP + +REG P E E L+ R+IDRP+RPLFP GF++E+QV+A+V+S + + P
Sbjct: 66 TYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISP 125
Query: 180 DIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREKT 239
D++A SAAL LS +P+ GPIG R+G I QF++NPT E +S L+LV A T +
Sbjct: 126 DLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAV 185
Query: 240 LMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISEQTLEKV 299
LM++ +A +SE+ + + + H + +E ++AGK + ++ + + +V
Sbjct: 186 LMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQV 245
Query: 300 SNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRV 359
LAEA I + K R E +D I DV L + + S + + + +
Sbjct: 246 KALAEARIGDAYR--ITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSI 303
Query: 360 IRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQR 419
+R RIIA R+DGR +D VR + +G LP HGS++F+RG+TQ L TLG +AQ
Sbjct: 304 VRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 363
Query: 420 LESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYT 479
++ L G + RF+ HY+FPP+ + E G+ RRE+GHG LA++ +LAV+P +FPY
Sbjct: 364 IDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYV 423
Query: 480 VRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRI 539
VRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E + + +
Sbjct: 424 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEE-------KFVV 476
Query: 540 LTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599
L+DILG EDHLGDMDFK+AGTR GVTA+Q+DIK GI +I+ L A R+ IL M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVM 536
Query: 600 EREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV-SDGTLTV 658
E+ I APR +PR+ T+K D ++ +IG GA+ R + EETG I + DGT+ +
Sbjct: 537 EQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKI 596
Query: 659 VAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSH 718
A + + + V+ +++ I+ E+EV IYKG VT V ++GAFV GG++GL+H+S++++
Sbjct: 597 AATDNNAAKAVMARIEDIVA-EVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITN 655
Query: 719 EPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
E V RV+D +SVGQ+++++ + D + I+L++K
Sbjct: 656 ERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK 689
>sp|B7LR33|PNP_ESCF3 Polyribonucleotide nucleotidyltransferase OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=pnp
PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKNAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|Q1QSZ4|PNP_CHRSD Polyribonucleotide nucleotidyltransferase OS=Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB
13768) GN=pnp PE=3 SV=1
Length = 707
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 308/713 (43%), Positives = 448/713 (62%), Gaps = 30/713 (4%)
Query: 60 KEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQE 118
K+ F+ G +TLETG+IAR A GAV++ MD+T VL TV + K + + F PL+V YQE
Sbjct: 5 KKTFQYGHSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQE 64
Query: 119 KQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQD 178
K +A G IP + +REG P E+E L R+IDRPIRPLFP GF +EVQV+ +VLS+D D
Sbjct: 65 KTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHD 124
Query: 179 PDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ-FIVNPTMDELSLSDLNLVYACTRE 237
PDI A TSAAL +S +P+ GPIG R+G + + +NPT++EL S+LN+V A T +
Sbjct: 125 PDIAAMLGTSAALAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSELNMVVAGTEK 184
Query: 238 KTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYK-----LSMIS 292
LM++ +A+E+ E ++ + H E + LA++AGK + +++ ++ S
Sbjct: 185 AVLMVESEAKELLEDEMLGAVLFGHQEMQAAITAIQALADEAGKPRWDWQPPTDDTTLKS 244
Query: 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQV----L 348
E + + EA+ TD K R +AL + + ALE EES Q +
Sbjct: 245 ALAAEFEAKVGEAY---RITD----KMARQDALSALKDE---ALERLAGEESGQYAADDV 294
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A ++ KRV+R RII R+DGR VRP+ E G LP HGS++F+RG+TQ +
Sbjct: 295 KGAFASLEKRVVRSRIIQGEPRIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVV 354
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ +ESL G RF+LHY+FPP+ + E G G RRE+GHG LA + + A
Sbjct: 355 ATLGTLRDAQLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQA 414
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
+LP E DFPYT+RV SE+ S+GS+SMA+VCG S+ALMDAG+PL+ VAG+++GLV + D
Sbjct: 415 MLPSEEDFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDED 474
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+ +LTDILG EDHLGDMDFK+AG+ GVTA+Q+DIK GI +I+ L+ A
Sbjct: 475 -------GFAVLTDILGDEDHLGDMDFKVAGSTAGVTALQMDIKIEGINEEIMETALQQA 527
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
H+ RL IL+ M I+ R++ N+P +AT+K D D +R +IG GA RKI ++TG
Sbjct: 528 HEARLHILEQMNTVIAQSRSEVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICDDTGAS 587
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A++++ + ++ V I E E+G +Y+G V + ++GAFV F G
Sbjct: 588 IDLDDDGTVRIYAEDKTAAKAAIDTV-LAITAEPEIGKLYRGTVARITDFGAFVTFMPGT 646
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEA 760
GL+H+S++ E V+ V D +S GQ++ ++ + D R +KLS+K V+ +A
Sbjct: 647 DGLVHISQIVPERVNDVRDYLSEGQEVIVKVLDIDNRNRVKLSIKEVTAEEKA 699
>sp|P05055|PNP_ECOLI Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain K12) GN=pnp PE=1 SV=3
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|A8A4Y0|PNP_ECOHS Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O9:H4
(strain HS) GN=pnp PE=3 SV=1
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B1XGX6|PNP_ECODH Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain K12 / DH10B) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|C4ZSQ5|PNP_ECOBW Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=pnp PE=3 SV=1
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A+ +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|Q31W43|PNP_SHIBS Polyribonucleotide nucleotidyltransferase OS=Shigella boydii
serotype 4 (strain Sb227) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 448/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++++LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B7M072|PNP_ECO8A Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O8
(strain IAI1) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDENLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|Q1R6H4|PNP_ECOUT Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain UTI89 / UPEC) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B1LFR6|PNP_ECOSM Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=pnp PE=3 SV=1
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B7NDF0|PNP_ECOLU Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|Q8FD87|PNP_ECOL6 Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|Q0TCU5|PNP_ECOL5 Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|A1AG69|PNP_ECOK1 Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O1:K1
/ APEC GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B7N0U9|PNP_ECO81 Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O81
(strain ED1a) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B7MB85|PNP_ECO45 Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYNGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|A9MP39|PNP_SALAR Polyribonucleotide nucleotidyltransferase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=pnp PE=3
SV=2
Length = 711
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 443/702 (63%), Gaps = 16/702 (2%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRP+RPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ +++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKA 351
+V+ LAE+ + + TD K ER +D I + L E D L +
Sbjct: 241 ALNARVAALAESRLSDAYRITD----KQERYAQVDVIKSETIDQLTAEDDTLDANELGEI 296
Query: 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTL 411
+ + K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T TL
Sbjct: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356
Query: 412 GAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLP 471
G +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LAV+P
Sbjct: 357 GTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416
Query: 472 PENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPST 531
+ FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473
Query: 532 GEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKG 591
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGA 529
Query: 592 RLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651
RL IL ME+ I+APR +PR+ T+K D ++ +IG G++ R + EETG I +
Sbjct: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEI 589
Query: 652 -SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGL 710
DGT+ + A + + + +++ I EIEVG IY G VT + ++GAFV GG++GL
Sbjct: 590 EDDGTVKIAATDGEKAKYAIRRIEEITA-EIEVGRIYNGKVTRIVDFGAFVAIGGGKEGL 648
Query: 711 LHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+H+S+++ + V +V+D + +GQ++ ++ + D +G ++LS+K
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690
>sp|Q3YX77|PNP_SHISS Polyribonucleotide nucleotidyltransferase OS=Shigella sonnei
(strain Ss046) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B6I1N9|PNP_ECOSE Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain SE11) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B7NKN3|PNP_ECO7I Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|B5YS54|PNP_ECO5E Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=pnp PE=3 SV=1
Length = 711
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
>sp|Q8X9M3|PNP_ECO57 Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
O157:H7 GN=pnp PE=3 SV=2
Length = 711
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/705 (42%), Positives = 447/705 (63%), Gaps = 22/705 (3%)
Query: 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GDSVRDFLPLT 113
+L +F+ G +TLETG +AR A AV++ MD+T V TV K +DF PLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 114 VDYQEKQFAQGVIPNTYMRREGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSS 173
V+YQE+ +A G IP ++ RREG P E E L+ R+IDRPIRPLFP GF +EVQV+A+V+S
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 174 DGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYA 233
+ + +PDI+A SAAL LS IP+ GPIG R+G I Q+++NPT DEL S L+LV A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 234 CTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293
T LM++ +A +SE + + H + ++ L ++AGK + +++ ++E
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 294 QTLEKVSNLAEAHIEAVF--TDPSYSKFERGEALDKIGQDVKKAL---EEECDEESLQVL 348
+V+ LAEA + + TD K ER +D I + L +E DE L +
Sbjct: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296
Query: 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCT 408
A++ K V+R R++A R+DGR+ D +R + +G LP HGS+LF+RG+TQ L T
Sbjct: 297 LHAIE---KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353
Query: 409 VTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA 468
TLG +AQ L+ L+G T F+ HY+FPP+ + E G RRE+GHG LA++ +LA
Sbjct: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413
Query: 469 VLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVD 528
V+P + FPYTVRV SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAG+++GLV E D
Sbjct: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473
Query: 529 PSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHA 588
+Y +L+DILG EDHLGDMDFK+AG+R G++A+Q+DIK GI +I+ L A
Sbjct: 474 -------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526
Query: 589 HKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR 648
RL IL ME+ I+APR +PR+ T+K + D ++ +IG G++ R + EETG
Sbjct: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586
Query: 649 ISV-SDGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQ 707
I + DGT+ + A + + + +++ I EIEVG +Y G VT + ++GAFV GG+
Sbjct: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGK 645
Query: 708 QGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752
+GL+H+S+++ + V +V+D + +GQ++ ++ + D +G I+LS+K
Sbjct: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,709,709
Number of Sequences: 539616
Number of extensions: 15804267
Number of successful extensions: 56580
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 519
Number of HSP's that attempted gapping in prelim test: 50431
Number of HSP's gapped (non-prelim): 2242
length of query: 974
length of database: 191,569,459
effective HSP length: 127
effective length of query: 847
effective length of database: 123,038,227
effective search space: 104213378269
effective search space used: 104213378269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)