Query 002054
Match_columns 974
No_of_seqs 637 out of 4689
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aid_A Polyribonucleotide nucl 100.0 2E-158 5E-163 1418.2 66.1 697 55-762 15-716 (726)
2 3cdi_A Polynucleotide phosphor 100.0 1E-152 5E-157 1375.3 58.5 698 54-761 6-705 (723)
3 1e3p_A Guanosine pentaphosphat 100.0 4E-151 1E-155 1366.8 58.1 697 58-762 27-750 (757)
4 3u1k_A Polyribonucleotide nucl 100.0 2E-136 8E-141 1218.5 68.7 617 59-677 6-629 (630)
5 3gme_A Polyribonucleotide nucl 100.0 3E-130 9E-135 1143.1 55.5 548 55-611 1-549 (549)
6 2nn6_B Exosome complex exonucl 100.0 7.7E-45 2.6E-49 392.1 20.6 231 362-609 9-242 (249)
7 2wnr_B Probable exosome comple 100.0 1.5E-43 5.1E-48 380.1 25.6 227 362-607 9-238 (240)
8 3m7n_D Probable exosome comple 100.0 7.2E-44 2.5E-48 385.2 22.6 225 363-606 10-240 (258)
9 2po1_A Probable exosome comple 100.0 2.5E-43 8.5E-48 380.3 22.4 231 357-607 5-238 (249)
10 2je6_B RRP41, exosome complex 100.0 1.2E-42 4.2E-47 375.2 23.5 228 363-609 14-244 (250)
11 3hkm_A OS03G0854200 protein; R 100.0 2.7E-42 9.3E-47 370.3 21.2 218 367-607 2-234 (246)
12 3b4t_A Ribonuclease PH; RNAse, 100.0 2.1E-41 7E-46 368.0 26.8 234 367-616 4-255 (262)
13 2wp8_B Exosome complex compone 100.0 5.4E-42 1.8E-46 369.4 19.7 226 363-608 6-237 (246)
14 2po1_B Probable exosome comple 100.0 4.2E-41 1.4E-45 368.6 26.2 237 350-607 8-276 (277)
15 3dd6_A Ribonuclease PH; exorib 100.0 4.1E-41 1.4E-45 363.3 24.1 227 367-607 9-251 (255)
16 3m7n_G Probable exosome comple 100.0 1.2E-40 4.2E-45 361.4 27.9 230 351-601 5-258 (259)
17 2wnr_A Probable exosome comple 100.0 8.2E-41 2.8E-45 365.3 26.6 230 354-604 10-270 (271)
18 1oys_A Ribonuclease PH; transf 100.0 1.6E-41 5.4E-46 365.5 20.2 229 369-611 1-245 (245)
19 2nn6_C Exosome complex exonucl 100.0 7.2E-41 2.5E-45 367.2 23.4 239 349-606 4-275 (278)
20 2nn6_F MTR3, exosome component 100.0 2.3E-41 7.9E-46 369.6 17.0 227 366-607 23-263 (272)
21 1udn_A Ribonuclease PH, RNAse 100.0 2.8E-40 9.6E-45 357.6 24.4 222 369-605 1-238 (255)
22 2je6_A RRP42, exosome complex 100.0 5.4E-40 1.9E-44 359.9 23.8 229 355-604 16-276 (277)
23 1r6l_A Ribonuclease PH; beta-a 100.0 1.4E-39 4.7E-44 349.3 25.9 222 369-605 2-239 (239)
24 2wp8_A Exosome complex compone 100.0 9.2E-40 3.2E-44 362.8 19.0 244 354-611 9-291 (305)
25 2nn6_E Exosome complex exonucl 100.0 1.9E-39 6.4E-44 360.0 20.5 236 350-608 18-293 (305)
26 2nn6_A Polymyositis/scleroderm 100.0 5.1E-39 1.7E-43 361.7 21.2 235 352-608 23-291 (358)
27 3dd6_A Ribonuclease PH; exorib 100.0 3.2E-39 1.1E-43 348.5 18.2 205 66-280 20-251 (255)
28 2je6_B RRP41, exosome complex 100.0 2.5E-38 8.7E-43 341.5 22.0 207 67-283 30-245 (250)
29 2nn6_D Exosome complex exonucl 100.0 1.7E-38 5.7E-43 340.2 19.2 216 364-606 11-233 (237)
30 3b4t_A Ribonuclease PH; RNAse, 100.0 2.9E-38 1E-42 343.2 20.6 214 67-287 16-253 (262)
31 2wp8_B Exosome complex compone 100.0 6E-38 2.1E-42 337.8 17.7 210 67-284 22-240 (246)
32 2nn6_F MTR3, exosome component 100.0 4.7E-38 1.6E-42 343.4 8.5 207 67-283 36-266 (272)
33 1r6l_A Ribonuclease PH; beta-a 100.0 1.6E-36 5.5E-41 325.4 19.7 201 67-277 12-238 (239)
34 2wnr_A Probable exosome comple 100.0 4E-36 1.4E-40 328.3 21.2 201 67-276 34-269 (271)
35 3m7n_G Probable exosome comple 100.0 2.7E-36 9.2E-41 327.3 18.3 199 67-274 32-258 (259)
36 3m7n_D Probable exosome comple 100.0 7.8E-36 2.7E-40 322.4 21.5 202 67-278 26-239 (258)
37 3krn_A Protein C14A4.5, confir 100.0 1.5E-38 5E-43 337.0 -1.0 197 67-283 5-212 (222)
38 1udn_A Ribonuclease PH, RNAse 100.0 1.2E-35 4.1E-40 321.4 20.4 202 67-278 11-238 (255)
39 2je6_A RRP42, exosome complex 100.0 1.6E-35 5.4E-40 324.5 20.5 201 67-276 39-275 (277)
40 1oys_A Ribonuclease PH; transf 100.0 1.5E-35 5.1E-40 318.9 17.0 206 67-279 11-240 (245)
41 3hkm_A OS03G0854200 protein; R 100.0 2.1E-35 7.3E-40 316.8 15.2 198 67-280 14-234 (246)
42 2nn6_C Exosome complex exonucl 100.0 4.4E-35 1.5E-39 321.2 17.7 203 67-278 34-274 (278)
43 2po1_A Probable exosome comple 100.0 2.4E-34 8.4E-39 310.1 22.1 203 67-279 26-237 (249)
44 4aid_A Polyribonucleotide nucl 100.0 5.9E-34 2E-38 341.8 22.5 215 379-615 27-249 (726)
45 3krn_A Protein C14A4.5, confir 100.0 4.9E-36 1.7E-40 317.6 2.8 201 376-606 2-208 (222)
46 3cdi_A Polynucleotide phosphor 100.0 1.4E-33 4.8E-38 340.6 23.5 244 368-639 14-272 (723)
47 2nn6_B Exosome complex exonucl 100.0 2.2E-33 7.4E-38 302.7 18.9 206 67-281 26-241 (249)
48 2nn6_E Exosome complex exonucl 100.0 4.5E-33 1.5E-37 308.8 17.4 203 67-281 46-293 (305)
49 2wnr_B Probable exosome comple 100.0 2.1E-32 7.2E-37 293.5 19.6 203 67-279 26-237 (240)
50 2nn6_D Exosome complex exonucl 100.0 1.6E-32 5.4E-37 293.9 18.4 195 67-279 30-233 (237)
51 2nn6_A Polymyositis/scleroderm 100.0 2.1E-32 7.1E-37 307.9 19.1 198 67-279 49-289 (358)
52 2po1_B Probable exosome comple 100.0 2E-31 6.8E-36 291.9 22.2 204 67-279 36-275 (277)
53 3u1k_A Polyribonucleotide nucl 100.0 1.1E-31 3.7E-36 319.8 21.4 214 67-288 328-566 (630)
54 2wp8_A Exosome complex compone 100.0 2.8E-31 9.7E-36 294.6 14.6 202 67-282 33-289 (305)
55 3gme_A Polyribonucleotide nucl 100.0 4.9E-30 1.7E-34 299.6 19.8 202 68-277 325-542 (549)
56 1e3p_A Guanosine pentaphosphat 100.0 2.5E-28 8.5E-33 295.8 21.1 212 67-287 365-596 (757)
57 3go5_A Multidomain protein wit 99.9 3.5E-25 1.2E-29 241.4 24.1 204 682-973 5-216 (285)
58 1kl9_A Eukaryotic translation 99.6 9.8E-18 3.4E-22 170.9 -3.1 110 681-790 13-139 (182)
59 1y14_B B16, RPB7, DNA-directed 99.6 3.8E-18 1.3E-22 173.3 -6.4 134 596-743 4-152 (171)
60 1go3_E DNA-directed RNA polyme 99.6 1.5E-16 5.1E-21 164.0 1.2 131 618-755 9-169 (187)
61 2b8k_G B16, DNA-directed RNA p 99.6 1.3E-17 4.4E-22 174.3 -10.1 145 596-755 4-167 (215)
62 2eqs_A ATP-dependent RNA helic 99.5 5.7E-15 1.9E-19 137.2 8.0 83 679-762 8-94 (103)
63 1luz_A Protein K3, protein K2; 99.5 7.2E-15 2.5E-19 132.4 7.6 77 679-757 7-87 (88)
64 2khi_A 30S ribosomal protein S 99.5 1.9E-14 6.5E-19 136.4 9.9 84 679-762 26-111 (115)
65 3go5_A Multidomain protein wit 99.5 2E-14 6.8E-19 156.7 10.7 136 680-839 66-220 (285)
66 2k4k_A GSP13, general stress p 99.5 1.9E-14 6.6E-19 139.2 8.5 82 679-760 3-85 (130)
67 2a19_A EIF-2- alpha, eukaryoti 99.5 1.4E-14 4.9E-19 146.8 7.3 93 681-773 13-114 (175)
68 1whu_A Polynucleotide phosphor 99.5 1E-13 3.5E-18 128.9 12.1 92 289-380 12-103 (104)
69 2cqo_A Nucleolar protein of 40 99.5 1.6E-14 5.6E-19 137.5 6.8 84 679-762 18-105 (119)
70 2k52_A Uncharacterized protein 99.5 1.4E-13 4.7E-18 121.9 10.5 73 680-756 2-75 (80)
71 2khj_A 30S ribosomal protein S 99.4 1.3E-13 4.5E-18 129.4 7.2 78 679-756 27-105 (109)
72 2c35_B Human RPB7, DNA-directe 99.4 2.9E-15 9.8E-20 152.3 -5.2 142 597-753 5-165 (172)
73 1q8k_A Eukaryotic translation 99.3 8.5E-13 2.9E-17 144.7 7.5 94 680-773 10-112 (308)
74 2khj_A 30S ribosomal protein S 99.3 1.3E-12 4.4E-17 122.6 7.5 80 894-973 13-102 (109)
75 3aev_A Translation initiation 99.3 1.2E-12 4E-17 141.8 8.3 93 680-772 8-109 (275)
76 2khi_A 30S ribosomal protein S 99.3 4.3E-12 1.5E-16 120.2 10.8 80 894-973 12-102 (115)
77 3cw2_C Translation initiation 99.3 1.7E-12 5.9E-17 140.2 3.7 82 680-761 8-92 (266)
78 2k52_A Uncharacterized protein 99.2 2.8E-11 9.7E-16 107.0 10.5 67 907-973 2-72 (80)
79 3h0g_G DNA-directed RNA polyme 99.2 1.2E-13 4E-18 140.2 -10.2 144 599-753 7-166 (172)
80 4ayb_E DNA-directed RNA polyme 99.2 3.5E-12 1.2E-16 130.5 0.1 75 679-754 77-167 (180)
81 2eqs_A ATP-dependent RNA helic 99.1 2.5E-10 8.4E-15 105.9 10.4 72 901-973 3-85 (103)
82 2k4k_A GSP13, general stress p 99.1 3.1E-10 1.1E-14 109.7 10.0 67 906-972 3-77 (130)
83 1wi5_A RRP5 protein homolog; S 99.1 1.2E-10 4E-15 111.0 5.8 77 679-755 17-96 (119)
84 3h36_A Polyribonucleotide nucl 99.0 4.8E-10 1.6E-14 102.0 8.8 84 286-372 4-93 (93)
85 3psi_A Transcription elongatio 99.0 3.1E-10 1E-14 143.7 8.7 76 679-754 898-975 (1219)
86 2cqo_A Nucleolar protein of 40 99.0 7.4E-10 2.5E-14 105.3 8.9 76 898-973 8-96 (119)
87 1luz_A Protein K3, protein K2; 99.0 6.1E-10 2.1E-14 100.1 7.7 67 904-972 5-82 (88)
88 2cpq_A FragIle X mental retard 99.0 2.8E-10 9.5E-15 102.0 4.8 65 613-677 12-79 (91)
89 3m7n_A Putative uncharacterize 99.0 8E-10 2.7E-14 112.7 8.6 70 680-754 55-134 (179)
90 1kl9_A Eukaryotic translation 99.0 1.5E-09 5.3E-14 110.4 10.3 66 908-973 13-88 (182)
91 2a19_A EIF-2- alpha, eukaryoti 99.0 2E-09 6.8E-14 109.1 10.9 69 905-973 9-88 (175)
92 2ctk_A Vigilin; K homology typ 98.9 6.4E-10 2.2E-14 103.1 6.2 74 603-677 4-82 (104)
93 3bzc_A TEX; helix-turn-helix, 98.9 2.4E-10 8.1E-15 139.4 3.9 76 680-755 651-727 (785)
94 2nn6_I 3'-5' exoribonuclease C 98.9 1.2E-09 4.2E-14 113.8 7.5 75 680-754 78-163 (209)
95 3psf_A Transcription elongatio 98.9 1.8E-10 6.2E-15 143.7 0.5 77 679-755 901-979 (1030)
96 1wi5_A RRP5 protein homolog; S 98.8 9.5E-09 3.2E-13 97.7 9.8 70 904-973 15-94 (119)
97 3aev_A Translation initiation 98.8 1.3E-08 4.4E-13 110.2 10.8 71 903-973 3-84 (275)
98 2je6_I RRP4, exosome complex R 98.8 4.8E-09 1.6E-13 112.3 6.7 74 680-753 71-147 (251)
99 2ba0_A Archeal exosome RNA bin 98.7 1.8E-08 6.1E-13 106.5 9.0 74 680-753 54-128 (229)
100 2e3u_A PH-DIM2P, hypothetical 98.7 1.1E-08 3.7E-13 107.2 6.4 76 602-677 20-101 (219)
101 1we8_A Tudor and KH domain con 98.7 1E-08 3.5E-13 95.1 4.6 76 605-681 4-88 (104)
102 2z0s_A Probable exosome comple 98.7 1.5E-08 5.2E-13 107.6 6.5 74 680-753 63-140 (235)
103 1q8k_A Eukaryotic translation 98.7 5.1E-08 1.7E-12 106.9 10.2 66 908-973 11-86 (308)
104 1vig_A Vigilin; RNA-binding pr 98.6 5.4E-08 1.8E-12 83.8 6.0 60 617-677 6-70 (71)
105 2ctj_A Vigilin; K homology typ 98.6 3.9E-08 1.3E-12 89.5 5.3 60 617-677 18-83 (95)
106 3cw2_C Translation initiation 98.6 4.2E-08 1.5E-12 105.9 6.0 68 906-973 7-84 (266)
107 2opv_A KHSRP protein; KH domai 98.5 1.2E-07 4.2E-12 84.5 7.0 62 615-677 13-83 (85)
108 3psi_A Transcription elongatio 98.5 1.4E-07 4.8E-12 119.6 8.8 68 905-972 897-973 (1219)
109 1hh2_P NUSA, N utilization sub 98.5 4.3E-07 1.5E-11 100.7 10.7 94 871-965 86-189 (344)
110 2ctm_A Vigilin; K homology typ 98.4 3E-07 1E-11 83.7 6.4 62 615-677 16-83 (95)
111 1go3_E DNA-directed RNA polyme 98.4 6.6E-07 2.3E-11 91.7 9.7 67 906-973 77-167 (187)
112 1y14_B B16, RPB7, DNA-directed 98.4 6.8E-07 2.3E-11 90.4 8.9 59 907-966 80-155 (171)
113 2ctl_A Vigilin; K homology typ 98.4 4.4E-07 1.5E-11 82.9 6.2 61 616-677 17-85 (97)
114 3bzc_A TEX; helix-turn-helix, 98.3 2.6E-07 8.9E-12 112.8 5.7 69 905-973 649-725 (785)
115 3psf_A Transcription elongatio 98.3 5.9E-08 2E-12 121.3 0.1 69 905-973 900-977 (1030)
116 2cte_A Vigilin; K homology typ 98.3 4.8E-07 1.6E-11 82.3 5.7 62 616-678 17-83 (94)
117 2axy_A Poly(RC)-binding protei 98.3 1.1E-06 3.9E-11 75.9 6.6 63 614-677 3-70 (73)
118 2b8k_G B16, DNA-directed RNA p 98.3 1E-06 3.6E-11 91.9 7.5 59 907-966 80-155 (215)
119 2id0_A Exoribonuclease 2; RNAs 98.3 2.7E-06 9.2E-11 103.0 12.0 72 680-751 555-642 (644)
120 4ayb_E DNA-directed RNA polyme 98.3 2.7E-06 9.3E-11 86.6 10.3 58 906-964 77-152 (180)
121 2hh3_A KH-type splicing regula 98.2 1E-06 3.5E-11 81.8 6.1 68 613-682 8-82 (106)
122 2c35_B Human RPB7, DNA-directe 98.2 2.3E-06 7.8E-11 86.6 9.1 58 908-966 79-155 (172)
123 2bx2_L Ribonuclease E, RNAse E 98.2 1.7E-06 5.8E-11 100.8 8.7 72 680-751 42-125 (517)
124 3ayh_B DNA-directed RNA polyme 98.2 1.7E-06 5.9E-11 89.7 7.8 63 680-743 78-159 (203)
125 2yqr_A KIAA0907 protein; struc 98.2 1.1E-06 3.9E-11 82.9 5.6 54 625-678 28-98 (119)
126 2ba0_A Archeal exosome RNA bin 98.2 4E-06 1.4E-10 88.5 9.8 65 908-972 55-127 (229)
127 2z0s_A Probable exosome comple 98.2 2E-06 6.9E-11 91.2 7.0 66 907-972 63-139 (235)
128 2nn6_I 3'-5' exoribonuclease C 98.2 2.3E-06 7.9E-11 89.1 7.2 66 907-972 78-161 (209)
129 1x4m_A FAR upstream element bi 98.2 1.9E-06 6.5E-11 78.3 5.8 65 616-682 15-88 (94)
130 3m7n_A Putative uncharacterize 98.2 3.7E-06 1.3E-10 85.6 8.6 60 908-972 56-132 (179)
131 2jvz_A KH type-splicing, FAR u 98.2 2.3E-06 7.8E-11 85.5 6.9 94 589-684 61-164 (164)
132 1k1g_A SF1-BO isoform; splicin 98.1 2.5E-06 8.5E-11 82.1 6.5 62 617-678 8-98 (131)
133 1hh2_P NUSA, N utilization sub 98.1 3.6E-06 1.2E-10 93.4 7.9 65 682-753 133-200 (344)
134 2p2r_A Poly(RC)-binding protei 98.1 3.2E-06 1.1E-10 73.6 5.8 62 615-677 4-72 (76)
135 2ckz_B C25, DNA-directed RNA p 98.1 3.9E-06 1.3E-10 87.9 7.3 65 679-743 77-155 (218)
136 2je6_I RRP4, exosome complex R 98.1 5.5E-06 1.9E-10 88.6 8.6 65 908-972 72-146 (251)
137 1x4n_A FAR upstream element bi 98.1 7E-06 2.4E-10 74.2 7.6 63 614-677 13-82 (92)
138 2ja9_A Exosome complex exonucl 98.1 9E-06 3.1E-10 82.1 9.0 93 680-773 4-97 (175)
139 2wp8_J Exosome complex exonucl 98.0 6.6E-06 2.3E-10 103.3 9.4 69 684-752 887-977 (977)
140 2nn6_H Exosome complex exonucl 98.0 3E-06 1E-10 92.9 5.3 88 680-773 92-189 (308)
141 3h0g_G DNA-directed RNA polyme 98.0 3.2E-06 1.1E-10 85.5 4.4 60 906-966 80-156 (172)
142 2bh8_A 1B11; transcription, mo 98.0 2.2E-05 7.5E-10 72.2 9.6 84 681-790 11-98 (101)
143 1zzk_A Heterogeneous nuclear r 98.0 9.9E-06 3.4E-10 71.6 6.9 61 616-677 7-74 (82)
144 3krm_A Insulin-like growth fac 98.0 1.1E-05 3.9E-10 80.5 8.2 86 587-677 59-154 (163)
145 2jzx_A Poly(RC)-binding protei 98.0 1.8E-05 6.1E-10 78.8 9.5 88 589-677 60-157 (160)
146 1wvn_A Poly(RC)-binding protei 98.0 8.2E-06 2.8E-10 72.1 6.1 63 615-678 5-74 (82)
147 1dtj_A RNA-binding neurooncolo 98.0 7.4E-06 2.5E-10 71.2 5.7 59 618-677 5-73 (76)
148 2vnu_D Exosome complex exonucl 98.0 9.8E-06 3.3E-10 99.8 8.8 68 685-752 671-760 (760)
149 2hh2_A KH-type splicing regula 97.9 9.4E-06 3.2E-10 75.5 6.1 60 617-677 8-77 (107)
150 1j5k_A Heterogeneous nuclear r 97.9 9.1E-06 3.1E-10 73.0 5.2 61 616-677 14-81 (89)
151 2bh8_A 1B11; transcription, mo 97.9 4.9E-06 1.7E-10 76.6 3.0 43 679-721 57-99 (101)
152 1ec6_A RNA-binding protein NOV 97.8 1.7E-05 5.8E-10 70.9 5.8 59 618-677 5-73 (87)
153 1k0r_A NUSA; two component arr 97.7 5.2E-05 1.8E-09 84.3 8.6 61 905-965 123-193 (366)
154 2dgr_A Ring finger and KH doma 97.7 3.2E-05 1.1E-09 68.4 5.2 61 616-677 10-74 (83)
155 2id0_A Exoribonuclease 2; RNAs 97.6 7.9E-05 2.7E-09 90.2 8.0 66 907-972 555-643 (644)
156 1k0r_A NUSA; two component arr 97.6 6.6E-05 2.3E-09 83.5 6.4 66 682-753 129-204 (366)
157 2ckz_B C25, DNA-directed RNA p 97.5 0.00015 5.2E-09 75.8 7.8 59 907-965 78-157 (218)
158 2ja9_A Exosome complex exonucl 97.5 0.00031 1E-08 70.9 9.1 66 908-973 5-77 (175)
159 3ayh_B DNA-directed RNA polyme 97.4 0.00021 7.1E-09 74.1 7.8 56 908-964 79-160 (203)
160 2jzx_A Poly(RC)-binding protei 97.4 0.00017 5.8E-09 71.7 6.2 64 613-677 2-70 (160)
161 2asb_A Transcription elongatio 97.4 0.00034 1.2E-08 73.8 8.4 57 909-965 6-70 (251)
162 2asb_A Transcription elongatio 97.3 0.00028 9.6E-09 74.4 6.8 67 681-753 5-81 (251)
163 1j4w_A FUSE binding protein; s 97.2 0.00058 2E-08 68.8 8.4 59 617-676 105-173 (174)
164 2bl5_A MGC83862 protein, quaki 97.2 0.00034 1.2E-08 67.7 5.8 53 625-677 17-99 (140)
165 2anr_A Neuro-oncological ventr 97.2 0.0004 1.4E-08 70.2 6.0 63 616-679 104-175 (178)
166 2bx2_L Ribonuclease E, RNAse E 97.1 0.00059 2E-08 79.5 7.8 60 906-965 41-118 (517)
167 2nn6_G Exosome complex exonucl 97.0 0.001 3.5E-08 72.1 8.3 92 680-773 124-216 (289)
168 3krm_A Insulin-like growth fac 97.0 0.00056 1.9E-08 68.1 5.7 62 615-677 2-71 (163)
169 2jvz_A KH type-splicing, FAR u 97.0 0.00076 2.6E-08 67.1 6.6 60 617-677 3-71 (164)
170 2nn6_H Exosome complex exonucl 96.9 0.00062 2.1E-08 74.6 5.4 64 908-971 93-173 (308)
171 2vnu_D Exosome complex exonucl 96.9 0.00064 2.2E-08 83.7 5.9 60 912-971 671-759 (760)
172 2wp8_J Exosome complex exonucl 96.9 0.00086 2.9E-08 84.3 6.4 61 911-971 887-976 (977)
173 1j4w_A FUSE binding protein; s 96.8 0.0013 4.5E-08 66.1 6.3 59 618-677 5-70 (174)
174 2anr_A Neuro-oncological ventr 96.6 0.0021 7.2E-08 64.9 6.1 61 617-678 7-77 (178)
175 2nn6_G Exosome complex exonucl 96.1 0.0086 2.9E-07 65.0 7.7 66 908-973 125-196 (289)
176 2ctf_A Vigilin; K homology typ 95.7 0.016 5.5E-07 53.1 6.4 61 616-677 27-90 (102)
177 2qnd_A FMR1 protein; KH domain 94.5 0.036 1.2E-06 54.0 5.4 59 618-677 69-140 (144)
178 2e3u_A PH-DIM2P, hypothetical 94.0 0.068 2.3E-06 55.7 6.3 51 626-677 139-189 (219)
179 1tua_A Hypothetical protein AP 93.7 0.099 3.4E-06 53.2 6.8 60 618-677 6-71 (191)
180 3n89_A Defective in GERM LINE 92.2 0.24 8.1E-06 55.5 7.7 85 586-677 162-259 (376)
181 2r7d_A Ribonuclease II family 92.2 0.32 1.1E-05 56.4 9.1 58 682-751 402-460 (469)
182 1tua_A Hypothetical protein AP 92.1 0.12 4E-06 52.7 4.7 51 626-677 108-158 (191)
183 3n89_A Defective in GERM LINE 90.7 0.27 9.2E-06 55.1 6.1 56 620-676 34-103 (376)
184 3d0f_A Penicillin-binding 1 tr 88.9 2 6.9E-05 39.1 9.6 59 679-737 29-93 (106)
185 1wfq_A UNR protein; beta-barre 87.1 4.1 0.00014 36.1 10.0 62 681-749 13-77 (89)
186 2qnd_A FMR1 protein; KH domain 85.8 1.1 3.7E-05 43.4 6.1 55 617-671 5-62 (144)
187 3v69_A Protein filia; RNA-bind 85.0 1.4 4.9E-05 41.9 6.2 59 618-677 58-122 (140)
188 2rf4_A DNA-directed RNA polyme 84.3 1.8 6.3E-05 44.7 7.4 69 679-747 125-205 (214)
189 2k5n_A Putative cold-shock pro 82.0 6.7 0.00023 33.4 8.7 53 686-746 2-57 (74)
190 1h95_A CSD, Y-box binding prot 80.0 5.6 0.00019 34.3 7.7 62 684-746 6-70 (79)
191 3i4o_A Translation initiation 78.5 2.7 9.1E-05 36.4 5.1 62 685-750 14-77 (79)
192 1jjg_A M156R; beta barrel, S1 77.3 6.4 0.00022 34.6 7.0 63 679-743 28-93 (102)
193 2k5n_A Putative cold-shock pro 75.7 9.6 0.00033 32.4 7.8 52 913-966 2-57 (74)
194 3i2z_B RNA chaperone, negative 75.3 10 0.00036 31.9 7.8 54 686-745 5-62 (71)
195 1wfq_A UNR protein; beta-barre 75.0 16 0.00054 32.2 9.3 59 907-966 12-74 (89)
196 3cam_A Cold-shock domain famil 75.0 9.2 0.00031 31.8 7.3 55 687-746 2-59 (67)
197 2kcm_A Cold shock domain famil 75.0 8.1 0.00028 32.9 7.1 60 688-752 2-64 (74)
198 1c9o_A CSPB, cold-shock protei 73.7 19 0.00065 29.7 9.0 54 687-745 2-57 (66)
199 3a0j_A Cold shock protein; OB- 71.6 14 0.00049 31.2 7.9 50 687-740 2-53 (73)
200 2yty_A Cold shock domain-conta 70.4 4.9 0.00017 35.5 4.8 58 682-746 14-73 (88)
201 1g6p_A Cold shock protein TMCS 69.0 9.1 0.00031 31.7 5.9 54 687-745 1-56 (66)
202 2r7d_A Ribonuclease II family 68.5 9.4 0.00032 44.1 8.0 50 909-968 402-456 (469)
203 2rf4_A DNA-directed RNA polyme 68.5 11 0.00036 38.9 7.7 60 907-966 126-204 (214)
204 3h8z_A FragIle X mental retard 68.3 5.9 0.0002 37.5 5.1 57 682-738 13-71 (128)
205 1jjg_A M156R; beta barrel, S1 66.6 37 0.0013 29.9 9.3 59 904-963 26-93 (102)
206 2ytx_A Cold shock domain-conta 65.6 6.3 0.00021 35.4 4.6 51 683-739 15-67 (97)
207 1d7q_A Translation initiation 61.2 21 0.00073 34.2 7.6 65 684-753 30-96 (143)
208 1h95_A CSD, Y-box binding prot 60.8 33 0.0011 29.4 8.1 58 911-969 6-73 (79)
209 3i2z_B RNA chaperone, negative 59.8 37 0.0013 28.4 8.1 52 913-966 5-63 (71)
210 3aqq_A Calcium-regulated heat 59.2 12 0.00042 36.1 5.6 53 683-741 59-114 (147)
211 3h8z_A FragIle X mental retard 57.6 12 0.0004 35.4 5.1 50 909-958 13-71 (128)
212 2yty_A Cold shock domain-conta 56.9 16 0.00054 32.2 5.5 55 909-965 14-72 (88)
213 3ts2_A Protein LIN-28 homolog 51.8 28 0.00097 33.6 6.9 56 685-745 8-73 (148)
214 1fr3_A MOP, molybdate/tungstat 50.6 16 0.00055 29.5 4.3 47 912-958 7-58 (67)
215 3aqq_A Calcium-regulated heat 50.2 30 0.001 33.5 6.7 53 909-961 58-114 (147)
216 3i4o_A Translation initiation 49.6 29 0.00098 29.9 5.8 51 912-962 14-68 (79)
217 3cam_A Cold-shock domain famil 48.6 44 0.0015 27.6 6.7 54 914-969 2-62 (67)
218 3ulj_A LIN28B, DNA-binding pro 48.4 42 0.0014 29.6 6.8 55 686-745 8-72 (90)
219 1gut_A Mopii, molybdate bindin 46.6 19 0.00064 29.3 4.1 47 912-958 7-59 (68)
220 2dgy_A MGC11102 protein; EIF-1 46.0 32 0.0011 31.6 5.8 66 681-752 12-80 (111)
221 1jt8_A EIF-1A, probable transl 45.2 8.5 0.00029 34.9 1.8 62 684-750 19-83 (102)
222 2ytx_A Cold shock domain-conta 43.9 28 0.00094 31.2 5.0 54 910-966 15-72 (97)
223 2lss_A Cold shock-like protein 48.3 5.3 0.00018 33.6 0.0 52 685-740 3-57 (70)
224 2ytv_A Cold shock domain-conta 39.1 17 0.00059 31.2 2.8 54 685-746 7-64 (79)
225 1x65_A UNR protein; cell-free 38.7 10 0.00034 33.6 1.2 49 685-740 7-57 (89)
226 2cxc_A NUSA; transcription ter 34.9 17 0.00057 35.1 2.2 34 618-651 38-71 (144)
227 1g6p_A Cold shock protein TMCS 31.7 87 0.003 25.6 5.9 50 915-966 2-57 (66)
228 1c9o_A CSPB, cold-shock protei 31.7 2.1E+02 0.0071 23.3 9.3 51 914-966 2-58 (66)
229 3a0j_A Cold shock protein; OB- 31.2 1.4E+02 0.0048 25.0 7.2 47 914-961 2-54 (73)
230 2eqj_A Metal-response element- 31.2 1.6E+02 0.0053 24.5 7.0 39 905-943 21-61 (66)
231 3ts2_A Protein LIN-28 homolog 30.4 97 0.0033 29.7 6.8 53 912-965 8-73 (148)
232 2do3_A Transcription elongatio 27.3 48 0.0016 27.8 3.4 31 939-970 10-50 (69)
233 2kcm_A Cold shock domain famil 27.2 1.7E+02 0.0058 24.6 7.0 52 915-968 2-60 (74)
234 2ytv_A Cold shock domain-conta 27.0 49 0.0017 28.3 3.6 54 912-966 7-64 (79)
235 2oqk_A Putative translation in 26.1 75 0.0026 29.4 4.9 63 681-749 29-93 (117)
236 3d0f_A Penicillin-binding 1 tr 25.2 1.7E+02 0.0058 26.1 7.2 49 909-957 32-93 (106)
237 3ulj_A LIN28B, DNA-binding pro 24.4 1.8E+02 0.0061 25.5 6.8 54 913-967 8-74 (90)
238 2lss_A Cold shock-like protein 29.6 17 0.00057 30.5 0.0 50 912-961 3-58 (70)
239 1x65_A UNR protein; cell-free 22.5 29 0.00099 30.6 1.3 50 912-962 7-59 (89)
240 1yez_A MM1357; MAR30, autostru 22.0 2.6E+02 0.0088 22.7 7.1 49 908-963 11-59 (68)
241 4hcz_A PHD finger protein 1; p 21.6 2.4E+02 0.0081 22.7 6.2 36 908-943 14-51 (58)
242 4hcz_A PHD finger protein 1; p 21.1 1.5E+02 0.0052 23.8 5.0 36 682-717 15-52 (58)
No 1
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=1.6e-158 Score=1418.20 Aligned_cols=697 Identities=42% Similarity=0.703 Sum_probs=543.9
Q ss_pred cceeeeeeEEECCeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CCCCCceeeEeeccccccccCCCCCccccc
Q 002054 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGVIPNTYMRR 133 (974)
Q Consensus 55 ~~~~~~~~~~~~~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~~~~f~pL~v~y~e~~~a~g~ip~~~~~R 133 (974)
||+.+++++++|||+++||||++|+||+|||++++|+|+|||||+++.+ +++.+|+||+|+|+||+||+|||||||+||
T Consensus 15 ~~~~~~~~~~~~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g~df~pltveY~ek~~a~G~iPg~~~~R 94 (726)
T 4aid_A 15 MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTFAAGKIPGGFFKR 94 (726)
T ss_dssp CCCEEECCCEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGGTCCCCSTTCS
T ss_pred ccCcEEEEEEECCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCCCCCcCceeeeeeehhhcccCCCcccCC
Confidence 7999999999999999999999999999999999999999999999988 678999999999999999999999999999
Q ss_pred cCCCCchhhhHHHhhcCCccccccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCE
Q 002054 134 EGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ 213 (974)
Q Consensus 134 eg~p~~~eil~~RlidR~lrplfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~ 213 (974)
||+|+++++|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||++||+|||||++||+
T Consensus 95 EGrps~~~~li~RlIdR~lRplf~~~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~ 174 (726)
T 4aid_A 95 EGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGA 174 (726)
T ss_dssp CCSCCHHHHHHHHHHHHHHGGGBCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTE
T ss_pred CCCCCchhhhHHHHhCCccccccccCCccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHhcCccceeEeeeCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCCCH
Q 002054 214 FIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293 (974)
Q Consensus 214 ~vldPt~~e~~~s~~~l~v~~t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~~~~ 293 (974)
+|+|||++|++.|++||+|+||+++++|+|+++++||+++|.+||++||+++++++++|+++++++||+|++|... .++
T Consensus 175 ~vldPt~~E~~~s~~dl~va~t~~~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~~k~~~~~~-~~~ 253 (726)
T 4aid_A 175 YVLNPTLDEMKESKMDLVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPE-DTD 253 (726)
T ss_dssp EEESCCHHHHHTCSEEEEEEECSSCEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCCC-TTH
T ss_pred EEECCCHHHHhhCceeEEEEEeCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccc-h--hhhchHHHHHHHHHHHHHHHHHHhcCCc
Q 002054 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECD-E--ESLQVLPKAVDTVRKRVIRKRIIAEGVR 370 (974)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~r~~il~~~~R 370 (974)
++.+++++++.++|++++.+ ++|++|+++++++++++.+.|.++.. + ....++..+|++++++.+|++|+++|+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~--~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~g~R 331 (726)
T 4aid_A 254 AIKAKMKDLVGADIAAAYKI--QKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFKELEADVVRRGILDTGLR 331 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHHHHTTTTCCTTSSCCCCSSSHHHHHHHHHHHHHHHHHHSSSBC
T ss_pred HHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999987 59999999999999999999965431 1 2456899999999999999999999999
Q ss_pred CCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccccC
Q 002054 371 VDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVG 450 (974)
Q Consensus 371 ~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~~~ 450 (974)
+|||.++|+|||+|++|+++++||||+|++|+|||||+|++|...+.++.|.+.+++.++|++||+|||||++++++.++
T Consensus 332 ~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er~~~g~ 411 (726)
T 4aid_A 332 IDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGS 411 (726)
T ss_dssp TTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCCCCCSS
T ss_pred CCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccccccCCC
Confidence 99999999999999999999999999999999999999988754455666667667889999999999999999999999
Q ss_pred CCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceeeeeeccCCCC
Q 002054 451 LNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530 (974)
Q Consensus 451 ~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~gli~~~d~~ 530 (974)
+++||++|++|++|+|++++|..+.|||+|+|+++||++|||++|||+||+++||+||||||+++|+||+||++++++
T Consensus 412 ~~~Reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~VaavsvGli~~g~-- 489 (726)
T 4aid_A 412 PGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQD-- 489 (726)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCCTTTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEECSS--
T ss_pred cchhhHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEEEEEEcCCC--
Confidence 999999999999999999999668999999999999999999999999999999999999999999999999998643
Q ss_pred CCcccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002054 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQD 610 (974)
Q Consensus 531 ~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~~~ 610 (974)
++.+|+||++.||++++|||+|++|.+|||++|++++.++++.++|.+||++|+++|.+|++.|+++|.++|.++
T Consensus 490 -----~~~iLlD~~~~Ed~~gd~d~~Va~t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~r~~~ 564 (726)
T 4aid_A 490 -----GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRADV 564 (726)
T ss_dssp -----CEEEEESCCTTGGGGSSEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSSC
T ss_pred -----ceEEEecCChhHHhcCCceEEEEecCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CCEEEEEecCHHHHHHHHHHHHHHhhcccccCcEEEE
Q 002054 611 DRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKG 689 (974)
Q Consensus 611 ~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg~v~i~~~~~~~~~~a~~~i~~l~~~~~~~G~i~~G 689 (974)
++|||++.+++|||+||+++||||||+||+|+++||++|||+ +|+|+|++.+++.+++|+++++.++ .++++|++|+|
T Consensus 565 ~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~-~~~~vG~v~~G 643 (726)
T 4aid_A 565 GDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSIT-DEAEVGKIYDG 643 (726)
T ss_dssp CSSCCC-------------------------------------------CCSCHHHHHHHHHC-----------------
T ss_pred cccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHh-hhhcCCcEEEE
Confidence 999999999999999999999999999999999999999997 8999999999999999999999988 68999999999
Q ss_pred EEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEeccCCCccccc
Q 002054 690 VVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEADV 762 (974)
Q Consensus 690 ~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~~~~~~~~~ 762 (974)
+|++|.+||+||+|.++.+||||+||++++++.++.++|++||.|+|||+++|.+|||.||+|++.++||...
T Consensus 644 ~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~~~~~~G~~~ 716 (726)
T 4aid_A 644 KVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGEDL 716 (726)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEeecccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888764
No 2
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.5e-152 Score=1375.30 Aligned_cols=698 Identities=42% Similarity=0.720 Sum_probs=495.3
Q ss_pred ccceeeeeeEEECCeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCCC-CCCCceeeEeeccccccccCCCCCcccc
Q 002054 54 KVLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGD-SVRDFLPLTVDYQEKQFAQGVIPNTYMR 132 (974)
Q Consensus 54 ~~~~~~~~~~~~~~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~~-~~~~f~pL~v~y~e~~~a~g~ip~~~~~ 132 (974)
.||+..+.++++|||++++|||++|+||||||++++|||+|||||+++.+| ++.+|+||+|+|+|++||+|||||||+|
T Consensus 6 ~~~~~~~~~~~~~~r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~~~f~pltv~y~ek~~a~g~ipg~f~k 85 (723)
T 3cdi_A 6 TLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFR 85 (723)
T ss_dssp --CCCEEEEEEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSSCCSCCEEEEEEECGGGGTCCCC----
T ss_pred cccceEEEEEEECCEEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCCCCeeeEEEEEeEeccccccCCCcccc
Confidence 356777889999999999999999999999999999999999999999874 6789999999999999999999999999
Q ss_pred ccCCCCchhhhHHHhhcCCccccccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECC
Q 002054 133 REGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICG 212 (974)
Q Consensus 133 Reg~p~~~eil~~RlidR~lrplfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g 212 (974)
|||+|+++|+|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||++||+|||||++||
T Consensus 86 ReGrpse~e~l~sRlIdR~lRplfp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g 165 (723)
T 3cdi_A 86 REGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND 165 (723)
T ss_dssp ---CCCHHHHHHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETT
T ss_pred CCCCCChHHhHHHHHhCccchhcccccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHhcCccceeEeeeCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCCC
Q 002054 213 QFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMIS 292 (974)
Q Consensus 213 ~~vldPt~~e~~~s~~~l~v~~t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~~~ 292 (974)
++|+|||++|++.|++||+|+|++++++|+|+++++|||++|.+||++||+++++++++|+++++++||+|++|.....+
T Consensus 166 ~~v~nPt~~e~~~s~~~lvvagt~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (723)
T 3cdi_A 166 QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 245 (723)
T ss_dssp EEEESCCTTGGGGCSEEEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCCCCCCCC
T ss_pred EEEECcCHHHHHhCCceEEEEccCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccchhhhchHHHHHHHHHHHHHHHHHHhcCCcCC
Q 002054 293 EQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVD 372 (974)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~D 372 (974)
+++.+++++++.++|++++.. ++|++|+++++++++++.++|.++..+....++..+|++++++.+|++++++|+|+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~--~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~vr~~i~~~g~R~D 323 (723)
T 3cdi_A 246 EALNARVAALAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRID 323 (723)
T ss_dssp TTGGGSSTTTTHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence 999999999999999999987 599999999999999999999544222234579999999999999999999999999
Q ss_pred CCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccccCCC
Q 002054 373 GRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLN 452 (974)
Q Consensus 373 GR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~~~~~ 452 (974)
||.++|+|||+|++|++|++||||+|++|+|||||+|++|...+.|..+.+.+++.++|++||+|||||+++++|.++++
T Consensus 324 GR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~r~g~p~ 403 (723)
T 3cdi_A 324 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK 403 (723)
T ss_dssp SCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC----
T ss_pred CCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccccCCCCC
Confidence 99999999999999999999999999999999999998875444556666666788999999999999999999999999
Q ss_pred chhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceeeeeeccCCCCCC
Q 002054 453 RREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532 (974)
Q Consensus 453 rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~gli~~~d~~~~ 532 (974)
+||++|+++++|+|++++|+++.|||+|+|+++||++|||++|||+||+++||+||||||+++|+|++||++++++
T Consensus 404 ~REi~~~~li~raL~~vI~~~~~~p~tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs~gli~~g~---- 479 (723)
T 3cdi_A 404 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD---- 479 (723)
T ss_dssp -CTTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEETT----
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEEEEEEcCCC----
Confidence 9999999999999999999878999999999999999999999999999999999999999999999999997532
Q ss_pred cccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002054 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDR 612 (974)
Q Consensus 533 ~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~~~~~ 612 (974)
+|.+|+||++.||++++|+|+|++|.+|||++|++++.++++.++|.+||++|++++.+|++.|+++|.+++.++++
T Consensus 480 ---~~~iL~Dp~~~Ed~~~d~d~~Va~t~~gI~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~~~~~~~~ 556 (723)
T 3cdi_A 480 ---NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 556 (723)
T ss_dssp ---EEEEESSCCGGGGGGCSEEEEEEECSSCEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred ---ceEEEECCChHHhhhccceeeecccCCceEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CCEEEEEecCHHHHHHHHHHHHHHhhcccccCcEEEEEE
Q 002054 613 NSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVGGIYKGVV 691 (974)
Q Consensus 613 ~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg~v~i~~~~~~~~~~a~~~i~~l~~~~~~~G~i~~G~V 691 (974)
|||++.+++|||+||+++|||||++|++|+++||+.|||+ +|.+.|++.+.+.+++|.++++.+. .++++|++|+|+|
T Consensus 557 ~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~-~~~~vG~i~~G~V 635 (723)
T 3cdi_A 557 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT-AEIEVGRVYTGKV 635 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHh-hhhhcCcEEEEEE
Confidence 9999999999999999999999999999999999999997 8999999999999999999998887 6899999999999
Q ss_pred EEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEeccCCCcccc
Q 002054 692 TSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761 (974)
Q Consensus 692 ~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~~~~~~~~ 761 (974)
++|.+||+||+|.+|.+||||+|+++++++++++++|++||.|+|||+++|.+|||.||+|++.++||..
T Consensus 636 ~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~~g~~ 705 (723)
T 3cdi_A 636 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPA 705 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEeccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999998999999999998888765
No 3
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=3.6e-151 Score=1366.79 Aligned_cols=697 Identities=37% Similarity=0.613 Sum_probs=587.0
Q ss_pred eeeeeEEECCeEEEEEeCccCcCCCcEEEEEe-CCeEEEEEEEeCCC-CCCCCceeeEeeccccccccCCCCCccccccC
Q 002054 58 TFKEEFEIGSRLITLETGKIARFANGAVVLGM-DETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREG 135 (974)
Q Consensus 58 ~~~~~~~~~~r~i~~etg~~a~~A~GSa~v~~-G~T~Vl~tv~~~~~-~~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg 135 (974)
.++.++++|||++++|||++|+||+|||++++ |+|+|||||+++++ +++.||+||+|+|+||+||+|||||+|+||||
T Consensus 27 ~~~~~~~~~~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~~df~pLtv~y~ek~~a~g~iPg~f~~REG 106 (757)
T 1e3p_A 27 AVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREG 106 (757)
T ss_dssp EEEECGGGCEEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTTCSSCCEEEEEEECGGGGTCCCCSTTSSCC
T ss_pred eEEEEEEECCEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCCCCCccEEEEEEecccccccCCCcccccCc
Confidence 44667888999999999999999999999999 99999999999988 57789999999999999999999999999999
Q ss_pred CCCchhhhHHHhhcCCccccccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEE
Q 002054 136 APKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFI 215 (974)
Q Consensus 136 ~p~~~eil~~RlidR~lrplfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~v 215 (974)
+|+++|+|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||++||+|||||++||++|
T Consensus 107 rps~~e~l~~RlIdR~LRplfp~~~~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~v 186 (757)
T 1e3p_A 107 RPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWV 186 (757)
T ss_dssp SCCHHHHHHHHHHHHHHGGGBCTTBCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEE
T ss_pred CCChHHHHHHHHHCCcchhccccCCCCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHhcCccceeEeee-----CCeEEEEEe------------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 216 VNPTMDELSLSDLNLVYACT-----REKTLMIDV------------QAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEK 278 (974)
Q Consensus 216 ldPt~~e~~~s~~~l~v~~t-----~~~i~mie~------------~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~ 278 (974)
+|||++|++.|++||+|+|| +++++|||+ ++++|||++|.+||++||++|++++++|++++++
T Consensus 187 lnPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~ 266 (757)
T 1e3p_A 187 AFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAK 266 (757)
T ss_dssp ESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 677999999 7889999999999999999999999999999999
Q ss_pred hCCccccccc-cCCCHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccchhhhchHHHHHHHHHH
Q 002054 279 AGKQKKEYKL-SMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRK 357 (974)
Q Consensus 279 ~g~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (974)
+||+|++|.. ...++++.+++++++.++|++++.. ++|++|+++++++++++.++|.+++. ....++..+|+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k 343 (757)
T 1e3p_A 267 AAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTI--AGKQDREAELDRVKALAAEKLLPEFE-GREKEISAAYRALTK 343 (757)
T ss_dssp HCCCCCCCCBCCSCCHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHHHHHHHHHHTTSTTTTC-SCHHHHHHHHHHHHH
T ss_pred cCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHH
Confidence 9999999987 6788999999999999999999986 59999999999999999999854322 234579999999999
Q ss_pred HHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEec
Q 002054 358 RVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSF 437 (974)
Q Consensus 358 ~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f 437 (974)
+.+|++++++|+|+|||.++|+|||+|++|++|++||||+|++|+|||||+|++|...+.++.+.+.+++.++|++||+|
T Consensus 344 ~~~r~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f 423 (757)
T 1e3p_A 344 SLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNF 423 (757)
T ss_dssp HHHHHHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999875555666677777889999999999
Q ss_pred CCCCccccccccCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCcccccc
Q 002054 438 PPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVA 517 (974)
Q Consensus 438 ~p~s~~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~va 517 (974)
||||++++++.+++++||++|+++++|+|++++|..++|||+|+|+++||++|||++|||+||+++|||||||||+++++
T Consensus 424 ~P~st~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Va 503 (757)
T 1e3p_A 424 PPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVA 503 (757)
T ss_dssp CGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCE
T ss_pred CCcccccccCCCCCchhHHHHHHHHHHHHHHhccccccCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceE
Confidence 99999999989999999999999999999999996689999999999999999999999999999999999999999999
Q ss_pred ceeeeeeccC-CCCCCcccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002054 518 GVSVGLVSEV-DPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596 (974)
Q Consensus 518 gvs~gli~~~-d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~ 596 (974)
|++||+++++ |. ..+|.+|+||++.||++++|+|+|++|.++||++|++++.++++.++|.+||++|++++.+|+
T Consensus 504 avs~gli~eg~dg----~~~~~iLlDp~~~Ed~~gd~d~~Va~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~ 579 (757)
T 1e3p_A 504 GIAMGLISQEING----ETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHIL 579 (757)
T ss_dssp EEEEEEEEEESSS----CEEEEEEESCCHHHHHHCSEEEEEEECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCC----ccceeEEeCCCHHHHhccCceEEEEecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999653 21 025789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CCEEEEEecCHHHHHHHHHHHHH
Q 002054 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDF 675 (974)
Q Consensus 597 ~~m~~~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg~v~i~~~~~~~~~~a~~~i~~ 675 (974)
+.|+++|.++ .++++|||++.+++|||+||+++||+|||+||+|+++||+.|||+ +|.+.|+..+...+++|+++++.
T Consensus 580 ~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~ 658 (757)
T 1e3p_A 580 DVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATING 658 (757)
T ss_dssp HHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC--------CCCBSSHHHHCC-------
T ss_pred HHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999998 89999999999999999888877
Q ss_pred Hhh-cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccC----CCccccccccccccCCEEEEEEEEEccCCceEEE
Q 002054 676 IIG-REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSEL----SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLS 750 (974)
Q Consensus 676 l~~-~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisel----s~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS 750 (974)
+.. .++++|++|+|+|++|.+||+||+|.+|.+||||+|++ +|+++++++++|++||.|+|||+++|.+|||.||
T Consensus 659 i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS 738 (757)
T 1e3p_A 659 IANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLI 738 (757)
T ss_dssp --------------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC----
T ss_pred hcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEE
Confidence 641 36899999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EeccCCCccccc
Q 002054 751 LKAVSPRPEADV 762 (974)
Q Consensus 751 ~K~~~~~~~~~~ 762 (974)
+|.+.++||...
T Consensus 739 ~k~~~~~pw~~~ 750 (757)
T 1e3p_A 739 PVIEGEEAASDE 750 (757)
T ss_dssp ------------
T ss_pred EecCCCCchhhh
Confidence 999999999864
No 4
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=2.2e-136 Score=1218.46 Aligned_cols=617 Identities=43% Similarity=0.719 Sum_probs=575.2
Q ss_pred eeeeEEECCeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCCCCCCCceeeEeeccccccccCCCCCccccccCCCC
Q 002054 59 FKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGDSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPK 138 (974)
Q Consensus 59 ~~~~~~~~~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~~~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~ 138 (974)
...++++|||++++|||++++||||||++++|||+|||||+++++++..+|+||+|+|+|++||+|||||+|+||||+|+
T Consensus 6 ~~~~~~~~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~df~pL~v~y~~~~~a~g~iPg~f~kRegrps 85 (630)
T 3u1k_A 6 SAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREVGTS 85 (630)
T ss_dssp EEEEEECSSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSSSSCCEEEEEECSEETTTTEECTTC-----CC
T ss_pred eeEEEEECCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCCCeeEEEEEEEecccccCCCCccccccCCCCC
Confidence 34677799999999999999999999999999999999999999833339999999999999999999999999999999
Q ss_pred chhhhHHHhhcCCccccccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcC
Q 002054 139 ERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNP 218 (974)
Q Consensus 139 ~~eil~~RlidR~lrplfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldP 218 (974)
++|+|+||||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||++||+|||||++||++|+||
T Consensus 86 ~~e~lisRlIdR~lRp~~~~~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 86 DKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHHHhHHhhhcccccCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcCccceeEeeeCCe-EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccC-CCHHHH
Q 002054 219 TMDELSLSDLNLVYACTREK-TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSM-ISEQTL 296 (974)
Q Consensus 219 t~~e~~~s~~~l~v~~t~~~-i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~-~~~~~~ 296 (974)
|++|++.|++||+|++++++ |+|+|++++++|+++|.+||++||+++++++++|+++++++||+|++|.... .++++.
T Consensus 166 t~~E~~~s~~dl~Va~t~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIV 245 (630)
T ss_dssp CHHHHHTEEEEEEEEEETTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCCCCCCHHHH
T ss_pred CHHHHhhCCceEEEEEccCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCCCCCHHHH
Confidence 99999999999999999865 9999999999999999999999999999999999999999999999996544 789999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccchhhhchHHHHHHHHHHHHHHHHHHhcCCcCCCCCC
Q 002054 297 EKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDGRQL 376 (974)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~DGR~~ 376 (974)
+++++++.++|++++.+..++|++|+++++++++++.++|.++.++....++..+|++++++.+|++|+++|+|+|||.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~g~R~DGR~~ 325 (630)
T 3u1k_A 246 KYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGRDL 325 (630)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCTTSCCT
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999987557999999999999999999997654443456899999999999999999999999999999
Q ss_pred CCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhcccc----CCCCceeEEEEEecCCCCccccccccCCC
Q 002054 377 DEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESL----VGPPTKRFMLHYSFPPFCINEVGKRVGLN 452 (974)
Q Consensus 377 ~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~----~~~~~~~~~v~~~f~p~s~~e~~~~~~~~ 452 (974)
+|+|||+|++|+++++||||+|++|+|||||+|+++.+.+.|+.|.+ .+++.++|++||+|||||++++++.|+++
T Consensus 326 ~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~ 405 (630)
T 3u1k_A 326 TSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLN 405 (630)
T ss_dssp TCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSSCC
T ss_pred ccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcccccccCCCCC
Confidence 99999999999999999999999999999999998766666666653 35788999999999999999999999999
Q ss_pred chhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceeeeeeccCCCCCC
Q 002054 453 RREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTG 532 (974)
Q Consensus 453 rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~gli~~~d~~~~ 532 (974)
+||++|++|++|+|++++| .+|||+|+|+++||++|||++|||+||+++|||||||||+++|+|++||++++.+++.+
T Consensus 406 rREi~~~~Li~raLr~vi~--~~~p~tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~~~~g 483 (630)
T 3u1k_A 406 RRELGHGALAEKALYPVIP--RDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKG 483 (630)
T ss_dssp HHHHHHHHHHHHHHGGGSC--TTCSSEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECSSSS
T ss_pred hHHHHHHHHHHHHHHhhCc--ccCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceEEEEEEEecCCCcccc
Confidence 9999999999999999999 47999999999999999999999999999999999999999999999999984222212
Q ss_pred cccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002054 533 EIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDDR 612 (974)
Q Consensus 533 ~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~~~~~ 612 (974)
+.++|.+|+||++.||++++|||+|++|.+|||++|++++..+++.++|.+||++|++++.+|++.|++++.+|+.++++
T Consensus 484 ~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~~~~~~~~ 563 (630)
T 3u1k_A 484 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKE 563 (630)
T ss_dssp CEEEEEEEESCCHHHHHTSSEEEEEEECSSCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCT
T ss_pred cccCceEEecCCHHHHhhCcceEEEEecCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23478999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CCEEEEEecCHHHHHHHHHHHHHHh
Q 002054 613 NSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 613 ~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
|||++.+++|||+||+++|||||++||+|+++||++|+|+ ||+|.|++.+++.+++|+++|+.++
T Consensus 564 ~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 564 NGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp TCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred cCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999997 8999999999999999999887654
No 5
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=2.6e-130 Score=1143.13 Aligned_cols=548 Identities=45% Similarity=0.735 Sum_probs=471.0
Q ss_pred cceeeeeeEEECCeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CCCCCceeeEeeccccccccCCCCCccccc
Q 002054 55 VLETFKEEFEIGSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQFAQGVIPNTYMRR 133 (974)
Q Consensus 55 ~~~~~~~~~~~~~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~~~~f~pL~v~y~e~~~a~g~ip~~~~~R 133 (974)
||+.+++++++|||+++||||++|+||+|||++++|||+|||||+++.+ +++.||+||+|+|+||+||+|||||||+||
T Consensus 1 ~~~~~~~~~~~~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g~df~Pltv~Y~e~~~a~G~iPg~~~~R 80 (549)
T 3gme_A 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRR 80 (549)
T ss_dssp CCCCEEEEEEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGTTCCCSCC---
T ss_pred CCCcEEEEEEECCEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCCCCCccceeeeeeehhhcccCCCcCcCc
Confidence 6788899999999999999999999999999999999999999999988 778999999999999999999999999999
Q ss_pred cCCCCchhhhHHHhhcCCccccccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCE
Q 002054 134 EGAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQ 213 (974)
Q Consensus 134 eg~p~~~eil~~RlidR~lrplfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~ 213 (974)
||+|+++|+|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||++||+|||||++||+
T Consensus 81 EGrps~~~~l~~RlIdR~lRplfp~~~~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~ 160 (549)
T 3gme_A 81 EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ 160 (549)
T ss_dssp --CCCHHHHHHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTE
T ss_pred CCCCChhhhHHHHHhCCccccccccCCcccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHhcCccceeEeeeCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCCCH
Q 002054 214 FIVNPTMDELSLSDLNLVYACTREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEYKLSMISE 293 (974)
Q Consensus 214 ~vldPt~~e~~~s~~~l~v~~t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~~~~ 293 (974)
+|+|||++|++.|++||+|+||+++++|||+++++|||++|.+||++||+++++++++|+++++++||+|++|.....++
T Consensus 161 ~vlnPt~~e~~~s~~dl~va~t~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 240 (549)
T 3gme_A 161 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 (549)
T ss_dssp EEESCCTTTTTTCSBCEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_pred EEECCCHHHHhhCceEEEEEecCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccchhhhchHHHHHHHHHHHHHHHHHHhcCCcCCC
Q 002054 294 QTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEGVRVDG 373 (974)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~DG 373 (974)
++.+++++++.++|++++.+ ++|++|+++++++++++.++|.++.++....++..+|++++++.+|++|+++|+|+||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~--~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~il~~g~R~DG 318 (549)
T 3gme_A 241 ALNARVAALAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDG 318 (549)
T ss_dssp HHHTTC----------------CCHHHHC-----------------------------CCHHHHHHHHHHHHHTCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999987 5999999999999999999997654333456899999999999999999999999999
Q ss_pred CCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccccCCCc
Q 002054 374 RQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNR 453 (974)
Q Consensus 374 R~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~~~~~r 453 (974)
|.++|+|||+|++|+++++||||+|++|+|||+|+||+|...+.+..+.+.+++.++|++||+|||||++++++.|++++
T Consensus 319 R~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~ 398 (549)
T 3gme_A 319 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKR 398 (549)
T ss_dssp CCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCCCSSCCCS
T ss_pred CCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcccCCCCCh
Confidence 99999999999999999999999999999999999998865666777777778899999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceeeeeeccCCCCCCc
Q 002054 454 REVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGE 533 (974)
Q Consensus 454 re~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~gli~~~d~~~~~ 533 (974)
||++|++|++|+|++++|+.+.|||+|+|+++||++|||++|||+||+++||+||||||+++|+|++||++++++
T Consensus 399 Reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~----- 473 (549)
T 3gme_A 399 REIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 (549)
T ss_dssp SHHHHHHHHHHHHTTTCCCTTTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETT-----
T ss_pred hHHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEEEEEEcCCC-----
Confidence 999999999999999999778999999999999999999999999999999999999999999999999998743
Q ss_pred ccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002054 534 IKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDD 611 (974)
Q Consensus 534 ~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~~~~ 611 (974)
++.+|+||++.||++++|||+|++|.+|++++||+++.+|++.++|.+||++|++++.+|++.|++++.+||.+++
T Consensus 474 --~~~iL~D~~~~Ed~~~d~d~~Va~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~pr~~~~ 549 (549)
T 3gme_A 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 (549)
T ss_dssp --EEEEEESCCHHHHHHSSEEEEEEECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC----
T ss_pred --ceEEEecCChHHHccCCceEEEEecCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998764
No 6
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.7e-45 Score=392.10 Aligned_cols=231 Identities=24% Similarity=0.365 Sum_probs=210.0
Q ss_pred HHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCC
Q 002054 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFC 441 (974)
Q Consensus 362 ~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s 441 (974)
+.++++|+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+ +|.+.+..+....+++++|++||+|+|||
T Consensus 9 ~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--g~~~~~~~~~~~~~~~g~l~~~~~~~p~a 86 (249)
T 2nn6_B 9 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSRARALPDRALVNCQYSSATFS 86 (249)
T ss_dssp --CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEE--EEEECCSSSCCCCCSSCCEEEEEEECTTT
T ss_pred hhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEE--ccCCccccccccCCCcEEEEEEEEcCCCc
Confidence 5677999999999999999999999999999999999999999999999 67665433223457889999999999999
Q ss_pred ccccccccCCCchhhhHHHHHHHHhhhcCCCCCCCCe-EEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCcccccccee
Q 002054 442 INEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY-TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVS 520 (974)
Q Consensus 442 ~~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~-tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs 520 (974)
++++++.+++++|+++|+++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+||||||+++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~-~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs 165 (249)
T 2nn6_B 87 TGERKRRPHGDRKSCEMGLQLRQTFEAAILT-QLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACS 165 (249)
T ss_dssp SSSCCCTTTSTHHHHHHHHHHHHHHHHTTCG-GGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEE
T ss_pred ccccccCCCCCHhHHHHHHHHHHHHHHhcCH-HHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEE
Confidence 9998888899999999999999999999998 67885 699999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCcccceEEEecCCccccccCCccEEEEee--CCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002054 521 VGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGT--RIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598 (974)
Q Consensus 521 ~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t--~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~ 598 (974)
+|++++ .+|+||+..||+.++++|+|+.+ .++|+++|+++ .++.++|.+|+++|++++.+|++.
T Consensus 166 ~g~~~~-----------~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g---~~~~~~l~~~l~~A~~~~~~i~~~ 231 (249)
T 2nn6_B 166 AGFVDG-----------TALADLSHVEEAAGGPQLALALLPASGQIALLEMDA---RLHEDHLERVLEAAAQAARDVHTL 231 (249)
T ss_dssp EEEETT-----------EEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS---CCBTTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-----------eEEECCChHHhccCCcEEEEEEECCCCCEEEEEEEC---CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999975 69999999999999999999963 45599999985 589999999999999999999999
Q ss_pred HHHHhcCCCCC
Q 002054 599 MEREISAPRTQ 609 (974)
Q Consensus 599 m~~~i~~~~~~ 609 (974)
|++++.++..+
T Consensus 232 ~~~~l~~~~~~ 242 (249)
T 2nn6_B 232 LDRVVRQHVRE 242 (249)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887543
No 7
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.5e-43 Score=380.12 Aligned_cols=227 Identities=30% Similarity=0.445 Sum_probs=201.9
Q ss_pred HHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCC
Q 002054 362 KRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFC 441 (974)
Q Consensus 362 ~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s 441 (974)
++++++|+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+ +|.+.... ....+++++|++||+|+|||
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--gp~e~~~~-~~~~~~~g~l~~~~~~~p~a 85 (240)
T 2wnr_B 9 QLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVY--GPREAQIR-KLQRPDRAVIRCRYNMAPFS 85 (240)
T ss_dssp ------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEE--EEEECCSS-SSCCSSSCEEEEEEEECTTS
T ss_pred EeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEE--cCCCCCcc-cccCCCcEEEEEEEEeCCCC
Confidence 5789999999999999999999999999999999999999999999999 66553221 23457889999999999999
Q ss_pred ccccccccCCCchhhhHHHHHHHHhhhcCCCCCCCCe-EEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCcccccccee
Q 002054 442 INEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY-TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVS 520 (974)
Q Consensus 442 ~~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~-tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs 520 (974)
+++++ .+++++|+++|+++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+|||+||+++|++++
T Consensus 86 ~~~~~-~~~~~~~~~~l~~ll~r~l~~~i~l-~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs 163 (240)
T 2wnr_B 86 VEERK-RPGPDRRSVEISKITAEALRPALIL-EKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACA 163 (240)
T ss_dssp SSSCC-CSSCCHHHHHHHHHHHHHHGGGBCG-GGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEE
T ss_pred cCCcc-CCCCChhHHHHHHHHHHHHHHhcCH-HHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEE
Confidence 99876 6789999999999999999999987 68896 899999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCcccceEEEecCCccccccCCccEEEEe-e-CCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002054 521 VGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAG-T-RIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDH 598 (974)
Q Consensus 521 ~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~-t-~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~ 598 (974)
+|++++ .+|+||+..||+.++++++|+. + .++|+++|++++ ++.++|.+|+++|.+++.+|++.
T Consensus 164 ~g~~~~-----------~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~---~~~~~l~~~l~~A~~~~~~i~~~ 229 (240)
T 2wnr_B 164 AGKVGD-----------QVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGN---LTPEEFERALDLAVEGCLRIHEV 229 (240)
T ss_dssp EEESSS-----------SEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEEC---BCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-----------EEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcc---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 999975 5999999999999999999996 4 455999999865 99999999999999999999999
Q ss_pred HHHHhcCCC
Q 002054 599 MEREISAPR 607 (974)
Q Consensus 599 m~~~i~~~~ 607 (974)
|++++.++.
T Consensus 230 ~~~~l~~~~ 238 (240)
T 2wnr_B 230 QKEALRKRY 238 (240)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999998763
No 8
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=7.2e-44 Score=385.17 Aligned_cols=225 Identities=30% Similarity=0.515 Sum_probs=205.2
Q ss_pred HHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCc
Q 002054 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCI 442 (974)
Q Consensus 363 ~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~ 442 (974)
+++.+|+|+|||.++|+|||+|++|+++++||||+|++|+|+|+|+|+ +|.+.+. .....+++++|++||+|+|||+
T Consensus 10 ~~i~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--gp~e~~~-~~~~~~~~g~l~~~~~~~P~s~ 86 (258)
T 3m7n_D 10 KLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVF--GPREVHP-EHLQDPSKAIIRYRYNMAPFSV 86 (258)
T ss_dssp CSEETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEE--EEEECSS-STTCCSSSCEEEEEEEECGGGS
T ss_pred HHHhcCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEE--cccCCCC-ccccCCCceEEEEEEEeCCccc
Confidence 356699999999999999999999999999999999999999999999 6766442 2234578899999999999999
Q ss_pred cccccccCCCchhhhHHHHHHHHhhhcCCCCCCCCe-EEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceee
Q 002054 443 NEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY-TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSV 521 (974)
Q Consensus 443 ~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~-tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~ 521 (974)
++++ .+++++||++|+++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+||||||+++|+|+++
T Consensus 87 ~~r~-~~~~~~re~ei~~li~r~l~~~i~~-~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsv 164 (258)
T 3m7n_D 87 EERK-RPGPDRRSIEISKVSKEAFEAVIMK-ELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAV 164 (258)
T ss_dssp SSCC-CSSCCHHHHHHHHHHHHHHHTTBCG-GGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEE
T ss_pred cccc-CCCCCHHHHHHHHHHHHHHHhhcCH-HhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEE
Confidence 8865 4679999999999999999999987 78975 6999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCcccceEEEecCCccccccCCccEEEEe-eC----CceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002054 522 GLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAG-TR----IGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596 (974)
Q Consensus 522 gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~-t~----~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~ 596 (974)
|++++ .+|+||+..||+.++++|+|++ +. ++|+++|+++ +++.++|.+|+++|++++.+|+
T Consensus 165 g~i~~-----------~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g---~~~~~~l~~~l~~A~~~~~~i~ 230 (258)
T 3m7n_D 165 GKADG-----------QLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDG---RMTRDEVKQAIELAKKGALQIY 230 (258)
T ss_dssp EEETT-----------EEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEE---EECHHHHHHHHHHHHHHHHHHH
T ss_pred EEECC-----------EEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecC---CcCHHHHHHHHHHHHHHHHHHH
Confidence 99964 6899999999999999999999 55 4599999985 6999999999999999999999
Q ss_pred HHHHHHhcCC
Q 002054 597 DHMEREISAP 606 (974)
Q Consensus 597 ~~m~~~i~~~ 606 (974)
+.|++++.+.
T Consensus 231 ~~~~~~l~~~ 240 (258)
T 3m7n_D 231 EMQREAILRR 240 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 9
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=2.5e-43 Score=380.33 Aligned_cols=231 Identities=29% Similarity=0.437 Sum_probs=208.1
Q ss_pred HHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEe
Q 002054 357 KRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYS 436 (974)
Q Consensus 357 ~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~ 436 (974)
|+.+ ++++++|+|+|||.++|+|+|.+++|+++++||||+|++|+|+|+|+|+ +|.+... .....+++++|+++|+
T Consensus 5 p~~~-~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--gp~e~~~-~~~~~~~~g~l~v~~~ 80 (249)
T 2po1_A 5 PEGL-KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVY--GPRELHP-KHLQRPDRAILRVRYN 80 (249)
T ss_dssp -----CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEE--EEEECSS-GGGCCSSSCEEEEEEE
T ss_pred Ccce-EEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEE--cCcccCc-ccccCCCceEEEEEEE
Confidence 3334 5788999999999999999999999999999999999999999999999 6665432 1234578899999999
Q ss_pred cCCCCccccccccCCCchhhhHHHHHHHHhhhcCCCCCCCC-eEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCcccc
Q 002054 437 FPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP-YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEH 515 (974)
Q Consensus 437 f~p~s~~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p-~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~ 515 (974)
|+|||+++++ .+++++||++++++++|+|+++++. +.|| |+|+|+++||++|||+++||+||+++||+||||||+++
T Consensus 81 ~~p~a~~~~~-~~~~~~~~~~~s~li~r~l~~~i~l-~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~ 158 (249)
T 2po1_A 81 MAPFSVEERK-KPGPDRRSIEISKVIKGALEPALIL-EMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL 158 (249)
T ss_dssp ECGGGSSSCC-CSSCCHHHHHHHHHHHHHHGGGBCG-GGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred eCCccccccc-CCCCCHHHHHHHHHHHHHHHhhccH-HHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCc
Confidence 9999999875 5679999999999999999999997 6889 58999999999999999999999999999999999999
Q ss_pred ccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEe--eCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHH
Q 002054 516 VAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAG--TRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRL 593 (974)
Q Consensus 516 vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~--t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~ 593 (974)
|+++++|++++ .+|+||+..||+.++++|+|++ +.++|+++|++++ ++.++|.+|+++|++++.
T Consensus 159 v~avs~g~~~~-----------~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~---~~~~~l~~~l~~A~~~~~ 224 (249)
T 2po1_A 159 VAACAAGKIEG-----------EIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGY---LTKDEFIEAVKLAIKGAK 224 (249)
T ss_dssp CEEEEEEEETT-----------EEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEEC---CCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECC-----------EEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcc---cCHHHHHHHHHHHHHHHH
Confidence 99999999974 7999999999999999999997 4556999999864 999999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 002054 594 QILDHMEREISAPR 607 (974)
Q Consensus 594 ~I~~~m~~~i~~~~ 607 (974)
+|++.|++++.++.
T Consensus 225 ~i~~~~~~~l~~~~ 238 (249)
T 2po1_A 225 AVYQKQREALKEKY 238 (249)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 10
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=1.2e-42 Score=375.21 Aligned_cols=228 Identities=29% Similarity=0.435 Sum_probs=207.8
Q ss_pred HHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCc
Q 002054 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCI 442 (974)
Q Consensus 363 ~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~ 442 (974)
.++++|+|+|||.++|+|+|++++|+++++||||+|++|+|+|+|+|+ +|.+.... ....+++++++++|+++|||+
T Consensus 14 ~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~--g~~e~~~~-~~~~~~~g~l~v~~~~~p~a~ 90 (250)
T 2je6_B 14 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVY--GPKEMHPR-HLSLPDRAVLRVRYHMTPFST 90 (250)
T ss_dssp SBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEE--EEEECSSG-GGSCSSSCEEEEEEEECTTSS
T ss_pred eecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEE--cccccccc-cccCCCcEEEEEEEEeCCCcc
Confidence 468899999999999999999999999999999999999999999999 66553211 233578899999999999999
Q ss_pred cccccccCCCchhhhHHHHHHHHhhhcCCCCCCCCe-EEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceee
Q 002054 443 NEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY-TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSV 521 (974)
Q Consensus 443 ~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~-tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~ 521 (974)
++++ .++++++|++++++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+|||+|++++|+++++
T Consensus 91 ~~~~-~g~~~~~e~~~s~li~r~l~~~i~~-~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsv 168 (250)
T 2je6_B 91 DERK-NPAPSRREIELSKVIREALESAVLV-ELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAV 168 (250)
T ss_dssp SSCC-CSSCCHHHHHHHHHHHHHHHTTBCG-GGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEE
T ss_pred CCcc-CCCCChhHHHHHHHHHHHHHhhcCH-hhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEE
Confidence 9986 7789999999999999999999997 67884 8999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCcccceEEEecCCccccccCCccEEEEe--eCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002054 522 GLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAG--TRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599 (974)
Q Consensus 522 gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~--t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m 599 (974)
|++++ .+|+||+..||+.++++++|+. +.++|+++|+++ +++.++|.+|+++|++++.+|++.|
T Consensus 169 g~~~~-----------~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g---~~~~~~l~~~l~~A~~~~~~i~~~~ 234 (250)
T 2je6_B 169 GKADG-----------VIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLE 234 (250)
T ss_dssp EEETT-----------EEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE---CBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECC-----------EEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEc---ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 7999999999999999999997 456699999986 4899999999999999999999999
Q ss_pred HHHhcCCCCC
Q 002054 600 EREISAPRTQ 609 (974)
Q Consensus 600 ~~~i~~~~~~ 609 (974)
++++.++..+
T Consensus 235 ~~~l~~~~~~ 244 (250)
T 2je6_B 235 REALKSKYVE 244 (250)
T ss_dssp HHHHHGGGC-
T ss_pred HHHHHHHHhh
Confidence 9999987543
No 11
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.7e-42 Score=370.34 Aligned_cols=218 Identities=21% Similarity=0.289 Sum_probs=182.3
Q ss_pred cCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccc
Q 002054 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVG 446 (974)
Q Consensus 367 ~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~ 446 (974)
+|+|+|||.++|+|||+|++|+++++||||+|++|+|+|+|+|+ +|.+.... .....+++++|+|+|+
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--g~~~~~~~----~~~~~~~~~~~~~~P~------ 69 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVY--GPKPGTRK----GENPEKASIEVVWKPM------ 69 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEC--CCEECCCT----TSCSSSCEEEEEEECS------
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEe--cCcCCCcc----cCCCccEEEEEEeCCC------
Confidence 68999999999999999999999999999999999999999999 77653211 2234567899999983
Q ss_pred cccCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceeeeeecc
Q 002054 447 KRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSE 526 (974)
Q Consensus 447 ~~~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~gli~~ 526 (974)
.|.+++||++++++++|+|+++++.+..++|+|+|+++||++|||+++||+||+++||+||||||+++|+|+++|++.+
T Consensus 70 -~g~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~ 148 (246)
T 3hkm_A 70 -TGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLED 148 (246)
T ss_dssp -SSCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTT
T ss_pred -CCCCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEEC
Confidence 2457889999999999999999998444469999999999999999999999999999999999999999999999953
Q ss_pred CCCCCCcccceEEEecCCccccccCCccEEEEeeCCceEEEEeec---------------cCCCCCHHHHHHHHHHHHHH
Q 002054 527 VDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDI---------------KPAGIPLDIICECLEHAHKG 591 (974)
Q Consensus 527 ~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~---------------k~~~i~~e~l~~al~~A~~~ 591 (974)
+ .+|+||+..||+.++++++|++|.+++|++|+++ ..++++.++|.+|+++|+++
T Consensus 149 g----------~~llDpt~~Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~ 218 (246)
T 3hkm_A 149 G----------EVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAA 218 (246)
T ss_dssp S----------CEEESCCHHHHTTCSEEEEEEEEC--------------------CCCEEEEECEEHHHHHHHHHHHHHH
T ss_pred C----------EEEECCCHHHHhcCCeeEEEEEeCCceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHH
Confidence 1 5999999999999999999999999999999976 24689999999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 002054 592 RLQILDHMEREISAPR 607 (974)
Q Consensus 592 ~~~I~~~m~~~i~~~~ 607 (974)
+.+|++.|+++|++..
T Consensus 219 ~~~i~~~~~~~l~~~~ 234 (246)
T 3hkm_A 219 SSRISDFMRTTLQKQA 234 (246)
T ss_dssp HHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999998764
No 12
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.1e-41 Score=368.03 Aligned_cols=234 Identities=26% Similarity=0.315 Sum_probs=209.3
Q ss_pred cCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccc
Q 002054 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVG 446 (974)
Q Consensus 367 ~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~ 446 (974)
.|+|+|||.++|+|+|++++|+++++||||+|++|+|+|+|+|+.+ ..... ...+++.+.++++|+++|||++++.
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~--~~~p~--~~~~~~~g~l~v~~~~~p~a~~~~~ 79 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVT--EGVPR--WRKATGLGWLTAEYAMLPSATHSRS 79 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEE--ESCC------CCSCCEEEEEEEECGGGSSSCC
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEec--CcCCC--ccCCCCceEEEEEEEeCCCcccccc
Confidence 5899999999999999999999999999999999999999999943 22110 1123577899999999999998875
Q ss_pred cc----cCCCchhhhHHHHHHHHhhhcCCCCCCCC-eEEEEEEEEEcCCCChhhHHHHHHHHHHHHc------------C
Q 002054 447 KR----VGLNRREVGHGTLAEKALLAVLPPENDFP-YTVRVNSEVMASDGSTSMATVCGGSMALMDA------------G 509 (974)
Q Consensus 447 ~~----~~~~rre~~~~~l~eral~~vi~~~~~~p-~tI~V~v~VLesdGs~~~A~v~aa~lAL~da------------g 509 (974)
++ |.+++++++++++++|+|+++++. +.|| |+|+|+++||++|||+++||+||+++||+|| +
T Consensus 80 ~Re~~~G~~~~~~~~isrli~r~lr~~i~~-~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ 158 (262)
T 3b4t_A 80 DRESVRGRLSGRTQEISRLIGRSLRACIDL-AALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDP 158 (262)
T ss_dssp CCHHHHTSCCHHHHHHHHHHHHHHHTTBCH-HHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHhcCH-hHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccC
Confidence 43 689999999999999999999998 5677 8999999999999999999999999999999 9
Q ss_pred CCccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHH
Q 002054 510 IPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHA 588 (974)
Q Consensus 510 vPi~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A 588 (974)
+||+++|+++++|++++ .+|+||+..||+.++++++|+++.+| |+++|+++++.+++.++|.+|+++|
T Consensus 159 ip~~~~v~avsvg~~~g-----------~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A 227 (262)
T 3b4t_A 159 RPLSCAIAAVSVGVVDG-----------RIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMA 227 (262)
T ss_dssp CCBCSCEEEEEEEEETT-----------EEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHH
T ss_pred CcccCceeEEEEEEECC-----------EEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHHHHHHHHHH
Confidence 99999999999999974 69999999999999999999999876 9999999877789999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 002054 589 HKGRLQILDHMEREISAPRTQDDRNSPR 616 (974)
Q Consensus 589 ~~~~~~I~~~m~~~i~~~~~~~~~~~p~ 616 (974)
++++.+|++.|++++.+++.+.++++|.
T Consensus 228 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 255 (262)
T 3b4t_A 228 LGACDTLFAAQRDALALPYPGVLPQGPP 255 (262)
T ss_dssp HHHHHHHHHHHHHHHTSCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHhcchhccCccCCC
Confidence 9999999999999999999999998885
No 13
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-42 Score=369.37 Aligned_cols=226 Identities=23% Similarity=0.332 Sum_probs=192.8
Q ss_pred HHHhcCCcCCCCCCCCccCeEEEeCCCCCC-CcceEEEeCCeEEEEEEEeCCCchh-hhccccCCCCceeEEEEEecCCC
Q 002054 363 RIIAEGVRVDGRQLDEVRPIYCESGNLPIL-HGSSLFSRGDTQVLCTVTLGAPAEA-QRLESLVGPPTKRFMLHYSFPPF 440 (974)
Q Consensus 363 ~il~~~~R~DGR~~~e~R~I~ie~g~l~~a-~GSal~~~G~T~Vl~~Vtl~~p~~~-~~~d~~~~~~~~~~~v~~~f~p~ 440 (974)
.++++|+|+|||.++|+|+|++++|+++++ ||||+|++|+|+|+|+|+ +|.+. ++.+ ..++++++++||+++||
T Consensus 6 ~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~--~~~~~~~~~~--~~~~~g~l~v~~~~~p~ 81 (246)
T 2wp8_B 6 IYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVK--GPKEPRLKSQ--MDTSKALLNVSVNINKF 81 (246)
T ss_dssp SSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEE--EEEC--------CCSSSEEEEEEEEEC--
T ss_pred hhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEE--ecCCcccccc--cCCCcEEEEEEEEeCCc
Confidence 467899999999999999999999999999 999999999999999999 55552 2111 24688999999999999
Q ss_pred Cccccccc-cCCCchhhhHHHHHHHHhhhcCCCCCCCC-eEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccc
Q 002054 441 CINEVGKR-VGLNRREVGHGTLAEKALLAVLPPENDFP-YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAG 518 (974)
Q Consensus 441 s~~e~~~~-~~~~rre~~~~~l~eral~~vi~~~~~~p-~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vag 518 (974)
|++++.++ +.+++||++++++++|+|+++++. +.|| |+|+|+++||++|||+++||+||+++||+||||||+++|++
T Consensus 82 a~~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~-~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~a 160 (246)
T 2wp8_B 82 SKFERSKSSHKNERRVLEIQTSLVRMFEKNVML-NIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISG 160 (246)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHBCT-TTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEE
T ss_pred ccccccccCCCCChhHHHHHHHHHHHHHHhhhH-HHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeE
Confidence 99998766 566799999999999999999998 6887 57999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEe--eCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002054 519 VSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAG--TRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596 (974)
Q Consensus 519 vs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~--t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~ 596 (974)
+++|++++ .+|+||+..|| .++++++|+. +.++|+++|+++ .++.++|.+|+++|++++.+|+
T Consensus 161 vs~g~~~~-----------~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~ 225 (246)
T 2wp8_B 161 ISVGLYDT-----------TPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVED---KIPLDRLENVLAIGIAGAHRVR 225 (246)
T ss_dssp EEEEEETT-----------EEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECS---CEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECC-----------EEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecC---CcCHHHHHHHHHHHHHHHHHHH
Confidence 99999965 79999999999 9999999975 455699999964 5899999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 002054 597 DHMEREISAPRT 608 (974)
Q Consensus 597 ~~m~~~i~~~~~ 608 (974)
+.|++++.++.+
T Consensus 226 ~~~~~~l~~~~~ 237 (246)
T 2wp8_B 226 DLMDEELRKHAQ 237 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 14
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=4.2e-41 Score=368.57 Aligned_cols=237 Identities=20% Similarity=0.278 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCC
Q 002054 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPP 427 (974)
Q Consensus 350 ~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~ 427 (974)
.+++..+++.+++ .+++|+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+++ .|.. ..++
T Consensus 8 ~~~s~~~~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-------~~~~ 79 (277)
T 2po1_B 8 EIVAGIMRDHIIN-LLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFP-------DTPN 79 (277)
T ss_dssp ---CCHHHHHHHH-HHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCCT-------TCTT
T ss_pred cccCccHHHHHHH-HHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCCC-------CCCC
Confidence 4566677777775 5699999999999999999999999999999999999999999999976 3432 2467
Q ss_pred ceeEEEEEecCCCCccccccccCCCchhhhHHHHHHHHhhh--cCCCC------CCCCeEEEEEEEEEcCCCChhhHHHH
Q 002054 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA--VLPPE------NDFPYTVRVNSEVMASDGSTSMATVC 499 (974)
Q Consensus 428 ~~~~~v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~--vi~~~------~~~p~tI~V~v~VLesdGs~~~A~v~ 499 (974)
+++|+++|+|+|||++.+ +.|.+++|+++++++++|+|++ +++.+ .+++|+|+|+++||++|||+++||+|
T Consensus 80 ~g~l~~~~~~~p~a~~~~-~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~ 158 (277)
T 2po1_B 80 MGVMTTNVELVPLASPTF-EPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGI 158 (277)
T ss_dssp SCEEEEEEEECGGGCTTC-CSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHH
T ss_pred ceEEEEEEEeCCCccccc-cCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHH
Confidence 899999999999999874 4578899999999999999987 34432 34679999999999999999999999
Q ss_pred HHHHHHHHcC---------------------CCccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEE
Q 002054 500 GGSMALMDAG---------------------IPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIA 558 (974)
Q Consensus 500 aa~lAL~dag---------------------vPi~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va 558 (974)
|+++||+||| +||+++|+++++|++++ .+|+||+..||+.++++++|+
T Consensus 159 aa~~AL~da~~p~~~~~~~~~~~~~~~~~~~ipl~~~~~avs~g~~~~-----------~~l~Dp~~~Ee~~~~~~~~v~ 227 (277)
T 2po1_B 159 AAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGN-----------ILVVDPSLDEELVMDGKITIT 227 (277)
T ss_dssp HHHHHHHHCEEEEEEECTTTCCEEEEEEEEECCBCCCCEEEEEEEETT-----------EEEESCCHHHHHHCSEEEEEE
T ss_pred HHHHHHHhcCCCcEEEeCCCceeecccccccccccCceEEEEEEEECC-----------EEEeCCCHHHHhhCCCcEEEE
Confidence 9999999999 89999999999999975 799999999999999999999
Q ss_pred eeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002054 559 GTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPR 607 (974)
Q Consensus 559 ~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~ 607 (974)
++.+| |+++|+.+. ++++.++|.+|+++|.+++.+|.+.|++++.+.+
T Consensus 228 ~~~~g~i~~lq~~g~-~~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~~~ 276 (277)
T 2po1_B 228 TDETGHISAVQKSEG-GAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAK 276 (277)
T ss_dssp ECTTSCEEEEEEESS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EcCCCCEEEEEccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988 999998764 6899999999999999999999999999998653
No 15
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=4.1e-41 Score=363.26 Aligned_cols=227 Identities=27% Similarity=0.357 Sum_probs=205.1
Q ss_pred cCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccc
Q 002054 367 EGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVG 446 (974)
Q Consensus 367 ~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~ 446 (974)
..+|.|||.++|+|||++++|+++++||||+|++|+|+|+|+|+.+...+ +...++++++|+++|+++|||+.++.
T Consensus 9 ~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p----~~~~~~~~g~l~v~~~~~P~a~~~~~ 84 (255)
T 3dd6_A 9 HHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP----PFMRGEGKGWVTAEYAMIPRATEQRT 84 (255)
T ss_dssp --CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCC----GGGTTSSCCEEEEEEEECTTSSSSCC
T ss_pred cccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCC----CCCCCCCceEEEEEEEECCCcccccc
Confidence 35799999999999999999999999999999999999999999542211 22446789999999999999999876
Q ss_pred cc----cCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHc-----------CCC
Q 002054 447 KR----VGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDA-----------GIP 511 (974)
Q Consensus 447 ~~----~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~da-----------gvP 511 (974)
++ |.+++|+++++++++|+|+++++.+....|+|+|+++||++|||+++||+||+++||+|| +||
T Consensus 85 ~Re~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iP 164 (255)
T 3dd6_A 85 IRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP 164 (255)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCC
Confidence 43 779999999999999999999998544568999999999999999999999999999999 999
Q ss_pred ccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHH
Q 002054 512 LQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHK 590 (974)
Q Consensus 512 i~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~ 590 (974)
|+++|+++++|++++ ..+|+||+..||+.++++++|++|.+| |+++|++++.++++.++|.+|+++|++
T Consensus 165 l~~~v~avsvg~i~g----------~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~ 234 (255)
T 3dd6_A 165 VKDYLAATSVGIVEE----------QGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQ 234 (255)
T ss_dssp BSSCEEEEEEEEETT----------TEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred ccCceeEEEEEEECC----------EEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999964 245599999999999999999999998 999999987789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 002054 591 GRLQILDHMEREISAPR 607 (974)
Q Consensus 591 ~~~~I~~~m~~~i~~~~ 607 (974)
++.+|++.|++++++..
T Consensus 235 ~~~~i~~~~~~~l~~~~ 251 (255)
T 3dd6_A 235 GIFQLIDIQKEALGDIV 251 (255)
T ss_dssp HHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 16
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1.2e-40 Score=361.36 Aligned_cols=230 Identities=18% Similarity=0.252 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCCc
Q 002054 351 AVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPPT 428 (974)
Q Consensus 351 ~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~~ 428 (974)
+++..+++.+++ .+++|+|+|||.++|+|++++++|.++++||||+|++|+|+|+|+|+++ .|.. ..+++
T Consensus 5 ~ls~~e~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-------~~~~~ 76 (259)
T 3m7n_G 5 ILVDIKRDYVLS-KLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYP-------DTPDR 76 (259)
T ss_dssp HHHHHHHHHHHH-HHHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECCCS-------SCTTS
T ss_pred ccCHHHHHHHHH-HHhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCCCC-------CCCCc
Confidence 577888888885 5568999999999999999999999999999999999999999999965 2321 24678
Q ss_pred eeEEEEEecCCCCccccccccCCCchhhhHHHHHHHHhhh--cCCCC------CCCCeEEEEEEEEEcCCCChhhHHHHH
Q 002054 429 KRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA--VLPPE------NDFPYTVRVNSEVMASDGSTSMATVCG 500 (974)
Q Consensus 429 ~~~~v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~--vi~~~------~~~p~tI~V~v~VLesdGs~~~A~v~a 500 (974)
++++++|+++|||+++++ .|.+++++++++++++|+|++ +++.+ .+|+|+|+|+++||++|||+++||+||
T Consensus 77 g~l~v~~~~~p~a~~~~~-~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~a 155 (259)
T 3m7n_G 77 GVIIVNAELVPLASPTFE-PGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALA 155 (259)
T ss_dssp CEEEEEEECCTTSCTTCC-SSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEEEEeCCccccccc-CCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHH
Confidence 899999999999999874 588999999999999999998 66652 245699999999999999999999999
Q ss_pred HHHHHHHcCC-------------CccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc-eEE
Q 002054 501 GSMALMDAGI-------------PLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTA 566 (974)
Q Consensus 501 a~lAL~dagv-------------Pi~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g-I~a 566 (974)
+++||+|+++ ||+++|+++++|++++ .+|+||+..||+.++++++|+++.+| +++
T Consensus 156 a~~AL~~a~iP~~~~~~~~~~~lp~~~~~~avtvg~~~~-----------~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~ 224 (259)
T 3m7n_G 156 AIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGN-----------KYLVDPSREEMSVGDTTLTITTDKDDNVVA 224 (259)
T ss_dssp HHHHHHTCEECTGGGTSSSCEECCBCCCCEEEEEEEETT-----------EEEESCCTTGGGGCSCEEEEEECTTSCEEE
T ss_pred HHHHHHhCCCCeEEecCCceecccccCceeEEEEEEECC-----------EEEECCCHHHHhhCCCcEEEEEeCCCcEEE
Confidence 9999999999 7999999999999975 69999999999999999999999985 999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 567 IQLDIKPAGIPLDIICECLEHAHKGRLQILDHMER 601 (974)
Q Consensus 567 lq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~ 601 (974)
+|+.++ ++++.++|.+|+++|++++.+|++.|++
T Consensus 225 i~~~g~-~~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 225 MQKSGG-YLLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp EEEESS-CCBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred EECCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999876 7999999999999999999999998764
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=8.2e-41 Score=365.33 Aligned_cols=230 Identities=19% Similarity=0.271 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCCceeE
Q 002054 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPPTKRF 431 (974)
Q Consensus 354 ~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~~~~~ 431 (974)
..+++.++ .++++|+|+|||.++|+|++++++|.++++||||+|++|+|+|+|+|+++ .|.. .+++++++
T Consensus 10 ~~~~~~~~-~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-------~~~~~g~l 81 (271)
T 2wnr_A 10 EITRKSIT-DLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFP-------DTPEMGVI 81 (271)
T ss_dssp CHHHHHHH-HHHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCCT-------TCTTCCEE
T ss_pred ccHHHHHH-HHHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCCC-------CCCCceEE
Confidence 34455555 58999999999999999999999999999999999999999999999965 3322 24688999
Q ss_pred EEEEecCCCCccccccccCCCchhhhHHHHHHHHhhh--cCCCCC------CCCeEEEEEEEEEcCCCChhhHHHHHHHH
Q 002054 432 MLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA--VLPPEN------DFPYTVRVNSEVMASDGSTSMATVCGGSM 503 (974)
Q Consensus 432 ~v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~--vi~~~~------~~p~tI~V~v~VLesdGs~~~A~v~aa~l 503 (974)
+++|+++|||+++ ++.|.+++++++++++++|+|++ +++.+. +++|+|+|+++||++|||+++||+||+++
T Consensus 82 ~v~~~~~p~a~~~-~~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~ 160 (271)
T 2wnr_A 82 LTNSELLPMASPT-FEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVA 160 (271)
T ss_dssp EEEEEECGGGCTT-CCCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHH
T ss_pred EEEEEeCCccccc-ccCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999987 45788999999999999999998 687631 24799999999999999999999999999
Q ss_pred HHHHcC--------------------CCccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc
Q 002054 504 ALMDAG--------------------IPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG 563 (974)
Q Consensus 504 AL~dag--------------------vPi~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g 563 (974)
||+|+| +||+++|+++++|++++ .+|+||+..||+.++++++|+++.+|
T Consensus 161 AL~~a~~p~~~~~~~~~~~~~~~~~~ip~~~~~~avt~g~~~~-----------~~l~Dpt~~Ee~~~~~~l~va~~~~~ 229 (271)
T 2wnr_A 161 ALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFAKIGN-----------EIVLDPSLEEEDILTARISIGVTEEG 229 (271)
T ss_dssp HHHHCEEEEEEEETTEEEEEEEEEEECCBCCCEEEEEEEEETT-----------EEEESCCHHHHTTCSEEEEEEEETTS
T ss_pred HHHhcCCCeEEecCCceeeccCcccccCccCCeEEEEEEEECC-----------EEEeCCCHHHHhcCCCcEEEEEeCCC
Confidence 999999 99999999999999975 79999999999999999999999866
Q ss_pred -eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002054 564 -VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREIS 604 (974)
Q Consensus 564 -I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~ 604 (974)
|+++|++++ ++++.++|.+|+++|++++.+|++.|+++++
T Consensus 230 ~i~~i~~~g~-~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 230 SICAMQKGGE-GPLTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp CEEEEEEESS-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999876 6899999999999999999999999999874
No 18
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=1.6e-41 Score=365.47 Aligned_cols=229 Identities=26% Similarity=0.337 Sum_probs=184.0
Q ss_pred CcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccc
Q 002054 369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKR 448 (974)
Q Consensus 369 ~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~ 448 (974)
+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+++ .... ....+++++++++||+++|||++++.++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~--~~~p--~~~~~~~~g~l~~~~~~~p~a~~~~~~R 76 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVE--DRVP--PFLRGGGKGWITAEYSMLPQATNQQTIQ 76 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEE--SCCC--GGGTTSCCCEEEEEEEC-----------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEec--cccC--CccCCCCceEEEEEEEeCCCcCcccccc
Confidence 49999999999999999999999999999999999999999954 2211 1123568899999999999999987533
Q ss_pred ----cCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcC-----------CCcc
Q 002054 449 ----VGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAG-----------IPLQ 513 (974)
Q Consensus 449 ----~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dag-----------vPi~ 513 (974)
|.++.++.+++++++|+|+++++.+..++|+|+|+++||++|||+++||+||+++||+||| +||+
T Consensus 77 e~~~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~ 156 (245)
T 1oys_A 77 ESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPIT 156 (245)
T ss_dssp --------CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBC
T ss_pred cccCCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCC
Confidence 5688999999999999999999985456679999999999999999999999999999999 9999
Q ss_pred ccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 002054 514 EHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGR 592 (974)
Q Consensus 514 ~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~ 592 (974)
++|+++++|++++ ..+|+||+..||+.++++++|+++.+| |+++|+++++++++.++|.+|+++|++++
T Consensus 157 ~~v~avs~g~~~g----------~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~ 226 (245)
T 1oys_A 157 DFLAAISVGIDKE----------QGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGI 226 (245)
T ss_dssp SCEEEEEEEEETT----------TEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECC----------EEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999963 256699999999999999999999988 99999998888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 002054 593 LQILDHMEREISAPRTQDD 611 (974)
Q Consensus 593 ~~I~~~m~~~i~~~~~~~~ 611 (974)
.+|++.|++++.++..+++
T Consensus 227 ~~i~~~~~~~l~~~~~~~~ 245 (245)
T 1oys_A 227 QELIDKQKEVLGDSLPELK 245 (245)
T ss_dssp HHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhhhhhhcC
Confidence 9999999999998876653
No 19
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.2e-41 Score=367.16 Aligned_cols=239 Identities=19% Similarity=0.311 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCC
Q 002054 349 PKAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGP 426 (974)
Q Consensus 349 ~~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~ 426 (974)
.++|.++.++.|+.++|++|+|+|||.++|+|++.+++|.++++||||+|++|+|+|+|+|+.+ .|.. ..+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-------~~~ 76 (278)
T 2nn6_C 4 AAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPST-------DAP 76 (278)
T ss_dssp -----CCSTHHHHHHHHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCCS-------SST
T ss_pred hhhhhhhCHHHHHHHHHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeecCCC-------CCC
Confidence 4578899999999999999999999999999999999999999999999999999999999954 1221 125
Q ss_pred CceeEEEEEecCCCCccccccccCCCchhhhHHHHHHHHhhh--cCCCC------CCCCeEEEEEEEEEcCCCChhhHHH
Q 002054 427 PTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA--VLPPE------NDFPYTVRVNSEVMASDGSTSMATV 498 (974)
Q Consensus 427 ~~~~~~v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~--vi~~~------~~~p~tI~V~v~VLesdGs~~~A~v 498 (974)
++++++++|+++|||++++ +.|.+++++++++++++|+|++ +++.+ .+|+|+|+|+++||++|||+++||+
T Consensus 77 ~~g~l~v~~~~~p~a~~~~-~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai 155 (278)
T 2nn6_C 77 DKGYVVPNVDLPPLCSSRF-RSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACT 155 (278)
T ss_dssp TCCCCEEEEECCSSSCTTS-CSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHH
T ss_pred CccEEEEEEEeCCccCccc-cCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHH
Confidence 7899999999999999986 4578899999999999999994 67542 3689999999999999999999999
Q ss_pred HHHHHHHHHcCC----------------------CccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEE
Q 002054 499 CGGSMALMDAGI----------------------PLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFK 556 (974)
Q Consensus 499 ~aa~lAL~dagv----------------------Pi~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~ 556 (974)
||+++||+|+|+ ||+++|+++++|++++ +.+|+||+..||+.++++++
T Consensus 156 ~aa~~AL~~a~iP~v~~~~~~~~~~~~~~~~~~lp~~~~~~avs~g~~~~----------~~~l~Dpt~~Ee~~~~~~l~ 225 (278)
T 2nn6_C 156 FALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVFDD----------TLLIVDPTGEEEHLATGTLT 225 (278)
T ss_dssp HHHHHHHHTCCCCCCCBCSSSBCCCTTSCCCSCSCCSCCCEEEEEEECTT----------TCCEESCCTTTTTSCSEEEE
T ss_pred HHHHHHHHhCCCCeEEEeCCCcceecCcccccccccCCceEEEEEEEECC----------ceEEECCCHHHHhhcCceEE
Confidence 999999999996 7999999999999964 25999999999999999999
Q ss_pred EEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002054 557 IAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606 (974)
Q Consensus 557 Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~ 606 (974)
|+++.+| |+++|+.+ +.+++.++|.+|+++|++++.+|++.|++++++.
T Consensus 226 va~~~~g~i~~v~~~g-~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 275 (278)
T 2nn6_C 226 IVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSM 275 (278)
T ss_dssp EEECTTCCEEEEEESC-CSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred EEEcCCCcEEEEEccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999986 99999987 4689999999999999999999999999999875
No 20
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.3e-41 Score=369.59 Aligned_cols=227 Identities=20% Similarity=0.269 Sum_probs=194.7
Q ss_pred hcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccc--c--------CCCCceeEEEEE
Q 002054 366 AEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLES--L--------VGPPTKRFMLHY 435 (974)
Q Consensus 366 ~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~--~--------~~~~~~~~~v~~ 435 (974)
++++|+|||.++|+|+|++++|+++++||||+|++|+|+|||+|+ +|.+...... + ..++++++++||
T Consensus 23 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~ 100 (272)
T 2nn6_F 23 DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS--GPRQAEGGERGGGPAGAGGEAPAALRGRLLCDF 100 (272)
T ss_dssp ------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEE--EEECC-------------------CBCEEEEEE
T ss_pred ccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEE--CCCcccccccccccccccccccCCCceEEEEEE
Confidence 788999999999999999999999999999999999999999999 6665432111 0 034679999999
Q ss_pred ecCCCCccccccccCCCchhhhHHHHHHHHhhhcCCCCCCCC-eEEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccc
Q 002054 436 SFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFP-YTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQE 514 (974)
Q Consensus 436 ~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p-~tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~ 514 (974)
+|+|||+++++ .++++++|++|+++++|+|+++++. +.|| |+|+|+++||++|||+++||+||+++||+|||||+++
T Consensus 101 ~~~p~a~~~~~-~~~~~~~e~~~s~li~r~l~~~i~~-~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~~ 178 (272)
T 2nn6_F 101 RRAPFAGRRRR-APPGGCEERELALALQEALEPAVRL-GRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYD 178 (272)
T ss_dssp EECTTSSSSCC-CSCCHHHHHHHHHHHHHHHTTTBCS-TTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSS
T ss_pred EecCCCcCCcc-CCCCCHHHHHHHHHHHHHHHHhccH-HHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcccC
Confidence 99999999865 4789999999999999999999998 6899 6999999999999999999999999999999999999
Q ss_pred cccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEE--eeCCceEEEEeeccCCCCCH-HHHHHHHHHHHHH
Q 002054 515 HVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIA--GTRIGVTAIQLDIKPAGIPL-DIICECLEHAHKG 591 (974)
Q Consensus 515 ~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va--~t~~gI~alq~~~k~~~i~~-e~l~~al~~A~~~ 591 (974)
+++|+++|++.+. +..+|+||+..||+.++++++|+ ++.++|+++|+++ +++. ++|.+|+++|+++
T Consensus 179 ~v~avsvg~~~~~--------~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g---~~~~~~~l~~~l~~A~~~ 247 (272)
T 2nn6_F 179 LVVGCGLSLAPGP--------APTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG---EGGLTESWAEAVRLGLEG 247 (272)
T ss_dssp CCEEEECCCCSCS--------SCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEEC---CSSCTTTTHHHHHHHHHH
T ss_pred cEEEEEEEEeecc--------CCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEec---CCCHHHHHHHHHHHHHHH
Confidence 9999999995221 22699999999999999999999 4556799999986 4899 9999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 002054 592 RLQILDHMEREISAPR 607 (974)
Q Consensus 592 ~~~I~~~m~~~i~~~~ 607 (974)
+++|++.|++++.++.
T Consensus 248 ~~~i~~~~~~~l~~~~ 263 (272)
T 2nn6_F 248 CQRLYPVLQQSLVRAA 263 (272)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 21
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=2.8e-40 Score=357.60 Aligned_cols=222 Identities=27% Similarity=0.372 Sum_probs=203.1
Q ss_pred CcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccc
Q 002054 369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKR 448 (974)
Q Consensus 369 ~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~ 448 (974)
+|+|||.++|+|+|.+++|+++++||||+|++|+|+|+|+|+.+ ... .+...+++++++++||+++|+++.+++++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~--~~~--p~~~~~~~~g~l~~~~~~~P~a~~~r~~R 76 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVI--ENV--PNWLKGKGQGWITAEYSMLPRATQQRTIR 76 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEE--SCC--CGGGTTSSCCEEEEEEEECSCCTTSCCCC
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcC--CcC--CCCCCCCCceEEEEEEEcCCCcccccccc
Confidence 49999999999999999999999999999999999999999954 221 12234578899999999999999987543
Q ss_pred ----cCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcC-----------CCcc
Q 002054 449 ----VGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAG-----------IPLQ 513 (974)
Q Consensus 449 ----~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dag-----------vPi~ 513 (974)
|.++.++++++++++|+|+++++.+..+.|+|+|+++||++|||+++||+||+++||+||| +||+
T Consensus 77 e~~~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~ 156 (255)
T 1udn_A 77 ESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIK 156 (255)
T ss_dssp SSTTCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCcc
Confidence 5789999999999999999999986566689999999999999999999999999999999 9999
Q ss_pred ccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 002054 514 EHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGR 592 (974)
Q Consensus 514 ~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~ 592 (974)
++|+++++|++++ .+|+||+..||+.++++++|+++.+| ++.+|++++.++++.++|.+|+++|++++
T Consensus 157 ~~v~avsvg~~~g-----------~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~ 225 (255)
T 1udn_A 157 DFVAAVSVGIVND-----------RILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGI 225 (255)
T ss_dssp CCEEEEEEEEETT-----------EEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECC-----------EEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999964 69999999999999999999999988 99999998888999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 002054 593 LQILDHMEREISA 605 (974)
Q Consensus 593 ~~I~~~m~~~i~~ 605 (974)
.+|++.|++++.+
T Consensus 226 ~~i~~~~~~~l~~ 238 (255)
T 1udn_A 226 NELIELQKKLYVI 238 (255)
T ss_dssp HHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999986
No 22
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=5.4e-40 Score=359.95 Aligned_cols=229 Identities=21% Similarity=0.290 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCCceeEE
Q 002054 355 VRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPPTKRFM 432 (974)
Q Consensus 355 ~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~~~~~~ 432 (974)
.+++.++ ..+++|+|+|||.++|+|++++++|.++++||||+|++|+|+|+|+|+++ .|.. .++++++++
T Consensus 16 ~~~~~i~-~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-------~~~~~g~l~ 87 (277)
T 2je6_A 16 IKKESIV-SLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYE-------DTPNQGNLI 87 (277)
T ss_dssp HHHHHHT-TTGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECCCT-------TCTTCCEEE
T ss_pred cHHHHHH-HHHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCCCC-------CCCCccEEE
Confidence 3444444 68999999999999999999999999999999999999999999999965 2321 246889999
Q ss_pred EEEecCCCCccccccccCCCchhhhHHHHHHHHhhh--cCCCCC------CCCeEEEEEEEEEcCCCChhhHHHHHHHHH
Q 002054 433 LHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA--VLPPEN------DFPYTVRVNSEVMASDGSTSMATVCGGSMA 504 (974)
Q Consensus 433 v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~--vi~~~~------~~p~tI~V~v~VLesdGs~~~A~v~aa~lA 504 (974)
++|+++|||++++ +.|++++++++++++++|+|++ +++.+. +++|+|+|+++||++|||+++||+||+++|
T Consensus 88 v~~~~~p~a~~~~-~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~A 166 (277)
T 2je6_A 88 VNVELLPLAYETF-EPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAA 166 (277)
T ss_dssp EEEEECTTSCTTC-CCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEEeCCccCccc-ccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999875 3678899999999999999999 465532 258999999999999999999999999999
Q ss_pred HHHcC---------------------CCccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc
Q 002054 505 LMDAG---------------------IPLQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG 563 (974)
Q Consensus 505 L~dag---------------------vPi~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g 563 (974)
|+|+| +||+++|+++++|++++ .+|+||+..||+.++++++|+++.+|
T Consensus 167 L~~a~~p~v~~~~~~~~~~~~~~~~~ip~~~~~~avsvg~~~~-----------~~l~Dpt~~Ee~~~~~~l~va~~~~g 235 (277)
T 2je6_A 167 LYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDK-----------YLVVDPDLDEESIMDAKISFSYTPDL 235 (277)
T ss_dssp HHTCEEEEEECC---CEEEEEEEEEECCCSCCCEEEEEEEETT-----------EEEESCCHHHHHHCSEEEEEEECTTC
T ss_pred HHhcCCCeEEecCCcceEeccCccccccccCCeEEEEEEEECC-----------EEecCCCHHHHhcCCCcEEEEEeCCC
Confidence 99999 99999999999999975 79999999999999999999999876
Q ss_pred -eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002054 564 -VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREIS 604 (974)
Q Consensus 564 -I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~ 604 (974)
|+++|++++ ++++.++|.+|+++|++++++|++.|+++++
T Consensus 236 ~i~~v~~~g~-~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 236 KIVGIQKSGK-GSMSLQDIDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp CEEEEEEESS-SCEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999876 7899999999999999999999999999874
No 23
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.4e-39 Score=349.29 Aligned_cols=222 Identities=27% Similarity=0.341 Sum_probs=200.1
Q ss_pred CcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccc
Q 002054 369 VRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKR 448 (974)
Q Consensus 369 ~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~ 448 (974)
.|+|||.++|+|+|++++|+++++||||+|++|+|+|+|+|+.+ ... .+...++++++++++|+++|+++.+++++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~--~~~--p~~~~~~~~g~l~v~~~~~p~~~~~r~~R 77 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAE--SGV--PRFLKGQGQGWLTAEYGMLPRSTGERNQR 77 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEE--ESC--SSCCC---CCEEEEEEEECTTSSSSCCCC
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEcc--Ccc--CCccCCCCcEEEEEEEEeCCCcccccccc
Confidence 39999999999999999999999999999999999999999943 221 12233467899999999999999987433
Q ss_pred ----cCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChhhHHHHHHHHHHHHcC-----------CCcc
Q 002054 449 ----VGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAG-----------IPLQ 513 (974)
Q Consensus 449 ----~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~~A~v~aa~lAL~dag-----------vPi~ 513 (974)
|.++.+++.++++++|+|+++++.+....|+|+|+++||++|||+++||+||+++||+||| +||+
T Consensus 78 e~~~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~ 157 (239)
T 1r6l_A 78 EASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLK 157 (239)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBC
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCcc
Confidence 6789999999999999999999986555689999999999999999999999999999999 9999
Q ss_pred ccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 002054 514 EHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGR 592 (974)
Q Consensus 514 ~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~ 592 (974)
++|+++++|++++ .+|+||+..||+.++++++|+++.+| ++.+|++++.++++.++|.+|+++|++++
T Consensus 158 ~~~~avs~g~~~~-----------~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~ 226 (239)
T 1r6l_A 158 QMVAAVSVGIYQG-----------VPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGM 226 (239)
T ss_dssp CCEEEEEEEEETT-----------EEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECC-----------EEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999964 69999999999999999999999988 99999998878999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 002054 593 LQILDHMEREISA 605 (974)
Q Consensus 593 ~~I~~~m~~~i~~ 605 (974)
.+|++.|++++++
T Consensus 227 ~~i~~~~~~~l~~ 239 (239)
T 1r6l_A 227 QELFELQRAALAE 239 (239)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999863
No 24
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-40 Score=362.75 Aligned_cols=244 Identities=18% Similarity=0.222 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCCceeE
Q 002054 354 TVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPPTKRF 431 (974)
Q Consensus 354 ~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~~~~~ 431 (974)
..++++++ ..|++|+|+|||.++|+|||+|++| ++||||+|++|+|+|+|+|+.+ .|... .++.+.+
T Consensus 9 ~~e~~~i~-~~l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~-------~~~~g~~ 77 (305)
T 2wp8_A 9 ASESKFIL-EALRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYED-------RPFEGLF 77 (305)
T ss_dssp HHHHHHHH-HHHTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CCSS-------CTTCCEE
T ss_pred cCHHHHHH-HHHhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCCccc-------CCCCcEE
Confidence 45556666 5589999999999999999999999 8999999999999999999953 34331 3578899
Q ss_pred EEEEecCCCCccccccccCCC-chhhhHHHHHHHHhh--hcCCCC------CCCCeEEEEEEEEEcCCCChhhHHHHHHH
Q 002054 432 MLHYSFPPFCINEVGKRVGLN-RREVGHGTLAEKALL--AVLPPE------NDFPYTVRVNSEVMASDGSTSMATVCGGS 502 (974)
Q Consensus 432 ~v~~~f~p~s~~e~~~~~~~~-rre~~~~~l~eral~--~vi~~~------~~~p~tI~V~v~VLesdGs~~~A~v~aa~ 502 (974)
.++|+|+|++.++++ .|.++ +++++++++++|+|+ .+++.+ .+|+|+|+|+++||++|||+++||+||++
T Consensus 78 ~~~ve~~~~~~~~~~-~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~ 156 (305)
T 2wp8_A 78 VISTEISPMAGSQFE-NGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVM 156 (305)
T ss_dssp EEEECCC-----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcccc-CCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999998873 46777 999999999999998 444332 36889999999999999999999999999
Q ss_pred HHHHHcCCC-----------------------ccccccceeeeeeccCCCCCCcccc----eEEEecCCccccccCCccE
Q 002054 503 MALMDAGIP-----------------------LQEHVAGVSVGLVSEVDPSTGEIKD----YRILTDILGLEDHLGDMDF 555 (974)
Q Consensus 503 lAL~dagvP-----------------------i~~~vagvs~gli~~~d~~~~~~~~----~~iL~Dp~~~Ee~~~d~d~ 555 (974)
+||+|||+| |++.|+++++|+++.++.+ ...+. +.+|+||++.||+.++++|
T Consensus 157 ~AL~~a~iP~~~~~~~~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~-~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l 235 (305)
T 2wp8_A 157 AGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTE-ENIKGETNSEISIIDATLKEELLRDGVL 235 (305)
T ss_dssp HHHHHCEECCCBCTTSSCCBCCSSSSCCEECCBSCCCEEEEEEECC----------------CEEESCCHHHHHHCSEEE
T ss_pred HHHHHhCCCeEEecCCceEecccccccccccccccCeEEEEEEEEcccccc-ccccccccCCeEEeCCCHHHHhccCCcE
Confidence 999999999 6788999999999621100 00001 5799999999999999999
Q ss_pred EEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002054 556 KIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQDD 611 (974)
Q Consensus 556 ~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~~~~ 611 (974)
+|+++.+| |+++|+.+ +.+++.++|.+|+++|++++.+|++.|++++.++.....
T Consensus 236 ~Va~~~~g~i~~l~~~g-~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~ 291 (305)
T 2wp8_A 236 TVTLNKNREVVQVSKAG-GLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRN 291 (305)
T ss_dssp EEEECTTSEEEEEEEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcEEEEEecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988 99999987 467999999999999999999999999999998755443
No 25
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.9e-39 Score=360.02 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCC
Q 002054 350 KAVDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPP 427 (974)
Q Consensus 350 ~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~ 427 (974)
..++..+++.+++. +++|+|+|||.++|+|+|.+++|.++++||||+|++|+|+|+|+|+.+ .|. ...++
T Consensus 18 ~~~s~~e~~~i~~~-l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~p~-------~~~~~ 89 (305)
T 2nn6_E 18 VTLSEAEKVYIVHG-VQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-------LEKPN 89 (305)
T ss_dssp -CCCHHHHHHHHHH-HHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCCC-------SSSCS
T ss_pred cccChhHHHHHHHH-HhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeCCC-------cCCCC
Confidence 34667778888855 589999999999999999999999999999999999999999999953 122 12467
Q ss_pred ceeEEEEEecCCCCccccccccCCCchhhhHHHHHHHHhhh----------cCCCCCCCCeEEEEEEEEEcCCCChhhHH
Q 002054 428 TKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLA----------VLPPENDFPYTVRVNSEVMASDGSTSMAT 497 (974)
Q Consensus 428 ~~~~~v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~----------vi~~~~~~p~tI~V~v~VLesdGs~~~A~ 497 (974)
.+.|.++|+|+|+|++++ +.+.+++++++++++++|+|++ ++| ..|+|+|+|+++||++|||+++||
T Consensus 90 ~g~l~~~v~~~p~a~~~~-~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p--~~~~w~i~idv~VL~~DG~~~daa 166 (305)
T 2nn6_E 90 EGYLEFFVDCSASATPEF-EGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP--REHCWVLYVDVLLLECGGNLFDAI 166 (305)
T ss_dssp SCCEEEECCCCTTTCSSC-CTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSST--TTCCCCEEEEEEECCCCSSHHHHH
T ss_pred ceEEEEEEEeCCCcCccc-cCCCCchHHHHHHHHHHHHHhhcCcccHHHheecc--CcEEEEEEEEEEEECCCCCHHHHH
Confidence 899999999999999876 3345568999999999999998 555 478999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccc---------------------------cccceeeeeeccCCCCCCcccceEEEecCCcccccc
Q 002054 498 VCGGSMALMDAGIPLQE---------------------------HVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHL 550 (974)
Q Consensus 498 v~aa~lAL~dagvPi~~---------------------------~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~ 550 (974)
+||+++||+|+++|+.. +|+++++|++++ .+|+||+..||+.
T Consensus 167 i~aa~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~-----------~~l~Dpt~~Ee~~ 235 (305)
T 2nn6_E 167 SIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGY-----------RHVVDATLQEEAC 235 (305)
T ss_dssp HHHHHHTTTTCCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEESSS-----------SEESSCCHHHHTS
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEECC-----------EEEECCCHHHHhh
Confidence 99999999999999653 478999999964 5999999999999
Q ss_pred CCccEEEEeeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002054 551 GDMDFKIAGTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRT 608 (974)
Q Consensus 551 ~d~d~~Va~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~ 608 (974)
++++++|+++.+| |+++|+.+ +.+++.++|.+|+++|++++.+|++.|+++++++..
T Consensus 236 ~~~~l~Va~~~~g~i~~i~~~g-~~~l~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 236 SLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp CSEEEEECCCSSSCCCEEEEEE-SSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcEEEEEcCCCCEEEEEccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 99999987 578999999999999999999999999999987654
No 26
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.1e-39 Score=361.67 Aligned_cols=235 Identities=19% Similarity=0.209 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCCCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeC--CCchhhhccccCCCCce
Q 002054 352 VDTVRKRVIRKRIIAEGVRVDGRQLDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLG--APAEAQRLESLVGPPTK 429 (974)
Q Consensus 352 ~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~--~p~~~~~~d~~~~~~~~ 429 (974)
++..+++.+++ .|++|+|+|||.++|+|+|.|++| ++||||+|++|+|+|+|+|+.+ .|... .++.+
T Consensus 23 ~s~~e~~~i~~-~L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p~~~-------~~~~g 91 (358)
T 2nn6_A 23 LSNCERRFLLR-AIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKLN-------RATEG 91 (358)
T ss_dssp CCHHHHHHHHH-HHHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCCST-------TTTSC
T ss_pred ccHhHHHHHHH-HHhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCCccc-------CCCCc
Confidence 34566777775 589999999999999999999999 8999999999999999999942 33321 26789
Q ss_pred eEEEEEecCCCCccccccccCCCchhhhHHHHHHHHhhhc--CCCC------CCCCeEEEEEEEEEcCCCChhhHHHHHH
Q 002054 430 RFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAV--LPPE------NDFPYTVRVNSEVMASDGSTSMATVCGG 501 (974)
Q Consensus 430 ~~~v~~~f~p~s~~e~~~~~~~~rre~~~~~l~eral~~v--i~~~------~~~p~tI~V~v~VLesdGs~~~A~v~aa 501 (974)
.|+++|+|+|+|+++++ .|.+++++++++++++|+|++. ++.+ ..|+|+|+|+++||++|||+++||+||+
T Consensus 92 ~l~~~v~~~p~a~~~~~-~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa 170 (358)
T 2nn6_A 92 ILFFNLELSQMAAPAFE-PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAA 170 (358)
T ss_dssp CEEEEEEECTTTCSSCC-SSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHH
T ss_pred EEEEEEEecCCcccccc-CCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHH
Confidence 99999999999998864 4678999999999999999882 2221 3588999999999999999999999999
Q ss_pred HHHHHHcCCC-----------------------ccccccceeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEE
Q 002054 502 SMALMDAGIP-----------------------LQEHVAGVSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIA 558 (974)
Q Consensus 502 ~lAL~dagvP-----------------------i~~~vagvs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va 558 (974)
++||+|||+| |+++|+++++|++..+ ..+|+||+..||+.++++++|+
T Consensus 171 ~aAL~da~iP~v~~~~~~v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~---------~~illDPt~~Ee~~~~~~l~Va 241 (358)
T 2nn6_A 171 IVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQG---------TYLLVDPNEREERVMDGLLVIA 241 (358)
T ss_dssp HHHHHHCCCCCCBCCTTCCBCCHHHHTSCCCCCBCCCEEEEEEEECTTT---------SSEEESCCHHHHHHCSCEEEEE
T ss_pred HHHHHHhCcCcEEeeCCeeEecccccccccccCccCCEEEEEEEEEeeC---------CEEEECCCHHHHhhcCccEEEE
Confidence 9999999999 9999999999998531 2699999999999999999999
Q ss_pred eeCCc-eEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002054 559 GTRIG-VTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRT 608 (974)
Q Consensus 559 ~t~~g-I~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~ 608 (974)
++.+| |+++|+.+. .+++.++|.+|+++|++++.+|++.|++++.++..
T Consensus 242 ~t~~g~I~~lqk~G~-~~ls~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 291 (358)
T 2nn6_A 242 MNKHREICTIQSSGG-IMLLKDQVLRCSKIAGVKVAEITELILKALENDQK 291 (358)
T ss_dssp EETTTEEEEEEEESC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCeEEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99987 999998654 57999999999999999999999999999987643
No 27
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=3.2e-39 Score=348.47 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=186.0
Q ss_pred CCeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C---CCCCceeeEeeccccccccCCCCCcccc---cc---C
Q 002054 66 GSRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D---SVRDFLPLTVDYQEKQFAQGVIPNTYMR---RE---G 135 (974)
Q Consensus 66 ~~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~---Re---g 135 (974)
..|++++++|.+ ++|||||++++|+|+|||+|+++.+ | +..+..+|+++|. +.|+++.+ || |
T Consensus 20 e~R~i~i~~g~~-~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~-------~~P~a~~~~~~Re~~~g 91 (255)
T 3dd6_A 20 ELRHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYA-------MIPRATEQRTIRESSKG 91 (255)
T ss_dssp CCCCEEEEESCS-SSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEE-------ECTTSSSSCCCCCCC-C
T ss_pred CCCCEEEEECCC-CCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEE-------ECCCcccccccccccCC
Confidence 368999999988 9999999999999999999999875 3 1233445999996 45655554 66 9
Q ss_pred CCCchhhhHHHhhcCCccccccCCCCCc--eEEEEEEEeccCCCChhhHHHHHHHHHhhcC-----------CCCCCCCe
Q 002054 136 APKERELLVGRIIDRPIRPLFPAGFYHE--VQVMASVLSSDGKQDPDIMAANATSAALMLS-----------DIPWGGPI 202 (974)
Q Consensus 136 ~p~~~eil~~RlidR~lrplfp~~~~~~--~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s-----------~iP~~~~v 202 (974)
+|++++++++|+|+|+|||+||.+++++ ++|+|+||++||+.. +||+|||++||+++ +|||+++|
T Consensus 92 ~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~--~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~~v 169 (255)
T 3dd6_A 92 KVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTR--TASITGAYVAMVLAFEKLLQAEKVSKIPVKDYL 169 (255)
T ss_dssp CCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTSSSSCCBSSCE
T ss_pred CCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHH--HHHHHHHHHHHHHhhhhhhhcCcccCCCccCce
Confidence 9999999999999999999999877655 999999999999987 99999999999999 99999999
Q ss_pred EEEEEEEECCEEE-EcCCHHHHhcCccceeEeeeCCe-EEEEEec--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 203 GMIRIGRICGQFI-VNPTMDELSLSDLNLVYACTREK-TLMIDVQ--AREISEKDLEAGLRLAHPEAVKYLEPQIRLAEK 278 (974)
Q Consensus 203 ~av~vg~i~g~~v-ldPt~~e~~~s~~~l~v~~t~~~-i~mie~~--~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~ 278 (974)
+||++|+++|++| +|||++|++.+++||+|++++++ ++|+|+. +..|++++|.+||++|++++++|+++|++++++
T Consensus 170 ~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 249 (255)
T 3dd6_A 170 AATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALGD 249 (255)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eEEEEEEECCEEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999998 9999986 467999999999999999999999999999987
Q ss_pred hC
Q 002054 279 AG 280 (974)
Q Consensus 279 ~g 280 (974)
.|
T Consensus 250 ~~ 251 (255)
T 3dd6_A 250 IV 251 (255)
T ss_dssp GG
T ss_pred HH
Confidence 76
No 28
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=2.5e-38 Score=341.52 Aligned_cols=207 Identities=18% Similarity=0.297 Sum_probs=190.6
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CC----CCCceeeEeeccccccccCCCCCccccccCCCCchh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DS----VRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERE 141 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~----~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~e 141 (974)
=|++.+++|.+ ++|+|||++++|+|+|||+|++|.+ .+ ..++.||+|+|.++.||++++ + +|+|++++
T Consensus 30 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~-----~-~g~~~~~e 102 (250)
T 2je6_B 30 LRSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDER-----K-NPAPSRRE 102 (250)
T ss_dssp CCCEEEEESCC-SSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSC-----C-CSSCCHHH
T ss_pred cCCeEEEeCCC-CCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCc-----c-CCCCChhH
Confidence 48899999977 9999999999999999999999766 22 578999999999999999865 2 68999999
Q ss_pred hhHHHhhcCCccccccCCCCC--ceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q 002054 142 LLVGRIIDRPIRPLFPAGFYH--EVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219 (974)
Q Consensus 142 il~~RlidR~lrplfp~~~~~--~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldPt 219 (974)
++++|+|+|+|||+||.++++ .++|+++||++||+.. +||+|||++||++++|||+++|+||++|+++|++++|||
T Consensus 103 ~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~--~aai~aa~~AL~~a~iP~~~~v~avsvg~~~~~~l~Dpt 180 (250)
T 2je6_B 103 IELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSR--LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLN 180 (250)
T ss_dssp HHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCBSSCCEEEEEEEETTEEEESCC
T ss_pred HHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhcCCCccCceEEEEEEEECCEEEeCCC
Confidence 999999999999999987766 7999999999999987 999999999999999999999999999999999999999
Q ss_pred HHHHhcCccceeEee--eCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 002054 220 MDELSLSDLNLVYAC--TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQK 283 (974)
Q Consensus 220 ~~e~~~s~~~l~v~~--t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k 283 (974)
++|++.++.||+|+. +.++++|+|+++ +|++++|.+||++|+++++++++.|++++++..+.+
T Consensus 181 ~~Ee~~~~~~l~va~~~~~~~i~~v~~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 245 (250)
T 2je6_B 181 ETEAMWGEADMPIAMMPSLNQVTLFQLNG-SMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 245 (250)
T ss_dssp HHHHHHSSEEEEEEEEGGGTEEEEEEEEE-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--
T ss_pred HHHHhcCCceEEEEEECCCCCEEEEEEEc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999996 567799999998 599999999999999999999999999998876543
No 29
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.7e-38 Score=340.20 Aligned_cols=216 Identities=20% Similarity=0.224 Sum_probs=174.0
Q ss_pred HHhcCCcCCCCCCC----CccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCC
Q 002054 364 IIAEGVRVDGRQLD----EVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPP 439 (974)
Q Consensus 364 il~~~~R~DGR~~~----e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p 439 (974)
.+.+|+|+|||.++ |+|||++++|+++++||||+|++|+|+|+|+|+ +|.+.+... ....+..++|+|+|
T Consensus 11 ~~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~--g~~~~~~~~----~~~~~g~l~~~~~p 84 (237)
T 2nn6_D 11 AKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVY--GPAEVKVSK----EIFNKATLEVILRP 84 (237)
T ss_dssp ----------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEE--EEEECC----------CCEEEEEEEEC
T ss_pred CCccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEe--CCCcccccc----cCCCcEEEEEEecC
Confidence 34679999999999 999999999999999999999999999999998 666533211 12345577888888
Q ss_pred CCccccccccCCCchhhhHHHHHHHHhhhcCCCCCCCCe-EEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccc
Q 002054 440 FCINEVGKRVGLNRREVGHGTLAEKALLAVLPPENDFPY-TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAG 518 (974)
Q Consensus 440 ~s~~e~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~-tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vag 518 (974)
|+ |.+++||++|+++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+|||+||+++|++
T Consensus 85 ~~-------g~~~~~e~~~~~li~r~l~~~i~~-~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~a 156 (237)
T 2nn6_D 85 KI-------GLPGVAEKSRERLIRNTCEAVVLG-TLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCG 156 (237)
T ss_dssp SS-------SCCCHHHHHHHHHHHHHHHHHCGG-GCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEE
T ss_pred CC-------CCCCccHHHHHHHHHHHHHHHhch-hcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeee
Confidence 74 457899999999999999999998 67885 8999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEe--eCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002054 519 VSVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAG--TRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQIL 596 (974)
Q Consensus 519 vs~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~--t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~ 596 (974)
+++|++.++ .+++||+..||..++.+++|+. +.++|+++|+. ++++.++|.+|+++|++++.+|+
T Consensus 157 vs~g~~~~~----------~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~---g~~~~~~l~~~l~~A~~~~~~i~ 223 (237)
T 2nn6_D 157 VACALDSDG----------TLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTK---GLYSDTELQQCLAAAQAASQHVF 223 (237)
T ss_dssp EEEEECTTC----------CEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEE---ESCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC----------cEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEe---CCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999531 5999999999988655555554 44569999996 36999999999999999999999
Q ss_pred HHHHHHhcCC
Q 002054 597 DHMEREISAP 606 (974)
Q Consensus 597 ~~m~~~i~~~ 606 (974)
+.|++++++.
T Consensus 224 ~~~~~~l~~~ 233 (237)
T 2nn6_D 224 RFYRESLQRR 233 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 30
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.9e-38 Score=343.22 Aligned_cols=214 Identities=20% Similarity=0.223 Sum_probs=192.2
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CC---CCCceeeEeeccccccccCCCCCcccccc---CCCCc
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DS---VRDFLPLTVDYQEKQFAQGVIPNTYMRRE---GAPKE 139 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~---~~~f~pL~v~y~e~~~a~g~ip~~~~~Re---g~p~~ 139 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++.+ |. +.+..+|+|+|.++.||+ ++|.+|| |+|++
T Consensus 16 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~----~~~~~Re~~~G~~~~ 90 (262)
T 3b4t_A 16 LRPVIITRGFT-ENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSAT----HSRSDRESVRGRLSG 90 (262)
T ss_dssp CCCEEEEETSS-SSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGS----SSCCCCHHHHTSCCH
T ss_pred cCCeEEEeCCc-CCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCcc----ccccccccCCCCCCH
Confidence 58999999977 9999999999999999999999876 42 245567999999999998 4688998 99999
Q ss_pred hhhhHHHhhcCCccccccCCCCCceEEE--EEEEeccCCCChhhHHHHHHHHHhhcC------------CCCCCCCeEEE
Q 002054 140 RELLVGRIIDRPIRPLFPAGFYHEVQVM--ASVLSSDGKQDPDIMAANATSAALMLS------------DIPWGGPIGMI 205 (974)
Q Consensus 140 ~eil~~RlidR~lrplfp~~~~~~~~i~--~~vl~~dg~~~~~~~ai~aAs~AL~~s------------~iP~~~~v~av 205 (974)
++++++|+|+|+|||+||.+++++.+|. |+||++||+ +.+||+|||++||+++ +|||+++++||
T Consensus 91 ~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~--~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~~~~v~av 168 (262)
T 3b4t_A 91 RTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAV 168 (262)
T ss_dssp HHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSC--HHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCBCSCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCC--HHHHHHHHHHHHHHHhhhhhccCCccccCCcccCceeEE
Confidence 9999999999999999998887776666 999999998 4599999999999999 99999999999
Q ss_pred EEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 002054 206 RIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA--REISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ 282 (974)
Q Consensus 206 ~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~--~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~ 282 (974)
++|+++|++++|||++|++.++.||+|+++.++ ++|+|+.+ ..|++++|.+||++|+++++++++.|++++++..++
T Consensus 169 svg~~~g~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 248 (262)
T 3b4t_A 169 SVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPG 248 (262)
T ss_dssp EEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred EEEEECCEEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 999999999999999999999999999999865 99999987 579999999999999999999999999999866554
Q ss_pred ccccc
Q 002054 283 KKEYK 287 (974)
Q Consensus 283 k~~~~ 287 (974)
...+.
T Consensus 249 ~~~~~ 253 (262)
T 3b4t_A 249 VLPQG 253 (262)
T ss_dssp CCC--
T ss_pred cCccC
Confidence 44443
No 31
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-38 Score=337.80 Aligned_cols=210 Identities=16% Similarity=0.092 Sum_probs=178.1
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC--C---CCCCceeeEeeccccccccCCCCCccccccCCCCchh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--D---SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERE 141 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~--~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~e 141 (974)
-|++.+++|.+++.|+|||++++|+|+|||+|+++.+ + ...++.||+++|.++.||++. |.+|||+|++++
T Consensus 22 ~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~----~~~r~g~~~~~~ 97 (246)
T 2wp8_B 22 LRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFE----RSKSSHKNERRV 97 (246)
T ss_dssp CCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC------------------CHHH
T ss_pred ccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccccc----ccccCCCCChhH
Confidence 5899999999954349999999999999999999876 2 246899999999999999975 788899999999
Q ss_pred hhHHHhhcCCccccccCC-C-CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q 002054 142 LLVGRIIDRPIRPLFPAG-F-YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219 (974)
Q Consensus 142 il~~RlidR~lrplfp~~-~-~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldPt 219 (974)
++++|+|+|+|||+||.. | ++.++|+++||++||+.. +||+|||++||++++|||+++|+||++|+++|++++|||
T Consensus 98 ~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~--~aai~aa~~AL~~a~iP~~~~v~avs~g~~~~~~l~Dp~ 175 (246)
T 2wp8_B 98 LEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIM--GSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTN 175 (246)
T ss_dssp HHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHH--HHHHHHHHHHHHHHTCCBSSCEEEEEEEEETTEEESSCC
T ss_pred HHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHH--HHHHHHHHHHHHHcCCcccCceeEEEEEEECCEEEECCC
Confidence 999999999999999964 4 567999999999999855 999999999999999999999999999999999999999
Q ss_pred HHHHhcCccceeEee--eCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 002054 220 MDELSLSDLNLVYAC--TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKK 284 (974)
Q Consensus 220 ~~e~~~s~~~l~v~~--t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k~ 284 (974)
++|+ .++.||+|+. +.++++|+|+++ .|++++|.+||++|+++++++++.|++.+++.++++.
T Consensus 176 ~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 240 (246)
T 2wp8_B 176 SLEE-NAMSTVTLGVVGKSEKLSLLLVED-KIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRV 240 (246)
T ss_dssp HHHH-HHSEEEEEEEETTSSCEEEEEECS-CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chhh-ccCceEEEEEeCCCCCEEEEEecC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999 9999999965 566799999987 5999999999999999999999999999998876554
No 32
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.7e-38 Score=343.40 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=187.3
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CCC---------------CCceeeEeeccccccccCCCCCcc
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSV---------------RDFLPLTVDYQEKQFAQGVIPNTY 130 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~~---------------~~f~pL~v~y~e~~~a~g~ip~~~ 130 (974)
-|++.+++|.+ .+|||||++++|+|+|||+|+++.+ +.. .++.||+|+|.++.||+++
T Consensus 36 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~----- 109 (272)
T 2nn6_F 36 LRPVYARAGLL-SQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRR----- 109 (272)
T ss_dssp CCCCCCCCSCC-SSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTTSSSS-----
T ss_pred cCCeEEEeCCC-CCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEecCCCcCC-----
Confidence 58899999999 5999999999999999999999887 332 3579999999999999986
Q ss_pred ccccCCCCchhhhHHHhhcCCccccccCCC--CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEE
Q 002054 131 MRREGAPKERELLVGRIIDRPIRPLFPAGF--YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIG 208 (974)
Q Consensus 131 ~~Reg~p~~~eil~~RlidR~lrplfp~~~--~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg 208 (974)
+|+|+|+++|++++|+|+|+|||+++.+. ++.++|+|+||++||+.. +||+|||++||++++|||+++|+||++|
T Consensus 110 -~~~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~--~aai~aa~~AL~da~iP~~~~v~avsvg 186 (272)
T 2nn6_F 110 -RRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSAL--AAALTAAALALADAGVEMYDLVVGCGLS 186 (272)
T ss_dssp -CCCSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHH--HHHHHHHHHHHHHHCCCBSSCCEEEECC
T ss_pred -ccCCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHcCCcccCcEEEEEEE
Confidence 56789999999999999999999777543 358999999999999755 9999999999999999999999999999
Q ss_pred E---ECCEEEEcCCHHHHhcCccceeEe--eeCCeEEEEEecCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 002054 209 R---ICGQFIVNPTMDELSLSDLNLVYA--CTREKTLMIDVQAREISE-KDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ 282 (974)
Q Consensus 209 ~---i~g~~vldPt~~e~~~s~~~l~v~--~t~~~i~mie~~~~~~~e-~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~ 282 (974)
+ ++|++|+|||++|++.+++||+|+ ++.++|+|+|+++ .|++ ++|.+||++|++++++++++|++++++.+++
T Consensus 187 ~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g-~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 265 (272)
T 2nn6_F 187 LAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG-EGGLTESWAEAVRLGLEGCQRLYPVLQQSLVRAARR 265 (272)
T ss_dssp CCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEEC-CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEec-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 899999999999999999999999 5677899999998 5999 9999999999999999999999999887754
Q ss_pred c
Q 002054 283 K 283 (974)
Q Consensus 283 k 283 (974)
+
T Consensus 266 ~ 266 (272)
T 2nn6_F 266 R 266 (272)
T ss_dssp H
T ss_pred h
Confidence 3
No 33
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.6e-36 Score=325.38 Aligned_cols=201 Identities=22% Similarity=0.286 Sum_probs=179.9
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CC---CCCceeeEeeccccccccCCCCCcccc---cc---CC
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DS---VRDFLPLTVDYQEKQFAQGVIPNTYMR---RE---GA 136 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~---~~~f~pL~v~y~e~~~a~g~ip~~~~~---Re---g~ 136 (974)
=|++.+++|.+ ++|+|||++++|+|+|||+|+++.+ |. +.+..+|+++| +++|+++.+ || |+
T Consensus 12 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~-------~~~p~~~~~r~~Re~~~G~ 83 (239)
T 1r6l_A 12 LRPIRITRHYT-KHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEY-------GMLPRSTGERNQREASRGK 83 (239)
T ss_dssp CCCEEEESSCS-SSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEE-------EECTTSSSSCCCCHHHHTS
T ss_pred cCCeEEEeCCc-CCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEE-------EeCCCccccccccccCCCC
Confidence 48899999988 9999999999999999999999876 32 23445699999 566777764 56 89
Q ss_pred CCchhhhHHHhhcCCccccccCCCCCc--eEEEEEEEeccCCCChhhHHHHHHHHHhhcCC-----------CCCCCCeE
Q 002054 137 PKERELLVGRIIDRPIRPLFPAGFYHE--VQVMASVLSSDGKQDPDIMAANATSAALMLSD-----------IPWGGPIG 203 (974)
Q Consensus 137 p~~~eil~~RlidR~lrplfp~~~~~~--~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~-----------iP~~~~v~ 203 (974)
|++++++++|+|+|+|||+||.+++++ ++|+|+||++||+.. +||+|||++||++++ |||+++++
T Consensus 84 ~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~--~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~~ 161 (239)
T 1r6l_A 84 QGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTR--TASITGATVALIDALAVLKKRGALKGNPLKQMVA 161 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCEE
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHhcchhcccCcccccCccCcee
Confidence 999999999999999999999888777 799999999999875 999999999999777 99999999
Q ss_pred EEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEec--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 204 MIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQ--AREISEKDLEAGLRLAHPEAVKYLEPQIRLAE 277 (974)
Q Consensus 204 av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~--~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~ 277 (974)
||++|+++|++++|||++|++.++.+|+|++++++ ++.+++. +..|++++|.+|+++|+++++++++.|+++++
T Consensus 162 avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 162 AVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEETTEEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887 7778753 46799999999999999999999999998764
No 34
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4e-36 Score=328.29 Aligned_cols=201 Identities=19% Similarity=0.254 Sum_probs=184.6
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeC-CCC--CCCCceeeEeeccccccccCCCCCccccccCCCCchhhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSS-KGD--SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELL 143 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~-~~~--~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~eil 143 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|+.+ .+| ...++.||+++|.++.||+++ +|+|+|++++++
T Consensus 34 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~------~~~g~~~~~~~~ 106 (271)
T 2wnr_A 34 FRDISIETGVI-SKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPT------FEPGPPDERSVE 106 (271)
T ss_dssp CCCEEEEESCS-TTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECGGGCTT------CCCSSCCHHHHH
T ss_pred ccCeEEEeCcc-CCCCeEEEEEECCeEEEEEEEeeeecCCCCCCCceEEEEEEEeCCccccc------ccCCCCchHHHH
Confidence 58899999999 89999999999999999999944 343 357899999999999999975 567999999999
Q ss_pred HHHhhcCCccc--ccc-CCC-------CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCC------------------
Q 002054 144 VGRIIDRPIRP--LFP-AGF-------YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD------------------ 195 (974)
Q Consensus 144 ~~RlidR~lrp--lfp-~~~-------~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~------------------ 195 (974)
++|+|+|+||| +|| +.| .+.++|+++||++||+. .+||+|||++||++++
T Consensus 107 ~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~--~~aai~aa~~AL~~a~~p~~~~~~~~~~~~~~~~ 184 (271)
T 2wnr_A 107 LSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNL--FDAAVLATVAALLDTRIPAAEVEDGEVVINREKM 184 (271)
T ss_dssp HHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCH--HHHHHHHHHHHHHHCEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCH--HHHHHHHHHHHHHhcCCCeEEecCCceeeccCcc
Confidence 99999999999 788 444 57999999999999984 5999999999999999
Q ss_pred --CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 002054 196 --IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISEKDLEAGLRLAHPEAVKYLEP 271 (974)
Q Consensus 196 --iP~~~~v~av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e~~~~~al~~a~~~~~~i~~~ 271 (974)
+||+++++||++|+++|++++|||++|++.++.+|+|++++++ ++|+|+.+ +.|++++|.+|+++|+++++++++.
T Consensus 185 ~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~i~~~ 264 (271)
T 2wnr_A 185 QPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEY 264 (271)
T ss_dssp EECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEESSSCBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEEeCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999855 99999875 6799999999999999999999999
Q ss_pred HHHHH
Q 002054 272 QIRLA 276 (974)
Q Consensus 272 ~~~~~ 276 (974)
|++++
T Consensus 265 ~~~~l 269 (271)
T 2wnr_A 265 LDKSM 269 (271)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98865
No 35
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=2.7e-36 Score=327.27 Aligned_cols=199 Identities=22% Similarity=0.247 Sum_probs=181.0
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C--CCCCceeeEeeccccccccCCCCCccccccCCCCchhhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D--SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELL 143 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~--~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~eil 143 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++.. | ...+..+|+++|.++.||+++ | |+|+|++++++
T Consensus 32 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~----~--~~g~~~~~~~~ 104 (259)
T 3m7n_G 32 FRKVEIIPNVI-EKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPT----F--EPGPPDENSIE 104 (259)
T ss_dssp CCCEEEEETSS-TTSSEEEEEEETTEEEEEEEEEEEECCCSSCTTSCEEEEEEECCTTSCTT----C--CSSSSCHHHHH
T ss_pred ccCeEEEeCCc-CCCCceEEEEECCcEEEEEEEecccCCCCCCCCceEEEEEEEeCCccccc----c--cCCCCChHHHH
Confidence 68999999999 8999999999999999999997543 3 234567899999999999986 2 56999999999
Q ss_pred HHHhhcCCccc--c--------ccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCC-------------CCCC
Q 002054 144 VGRIIDRPIRP--L--------FPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDI-------------PWGG 200 (974)
Q Consensus 144 ~~RlidR~lrp--l--------fp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~i-------------P~~~ 200 (974)
++|+|+|+||| + +|..|.+.++|+|+||++||+.. +||+|||++||++++| ||++
T Consensus 105 ~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~iP~~~~~~~~~~~lp~~~ 182 (259)
T 3m7n_G 105 LARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLL--DASALAAIAALMNTKVPAERFDLGEDYLLPVRD 182 (259)
T ss_dssp HHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHH--HHHHHHHHHHHHTCEECTGGGTSSSCEECCBCC
T ss_pred HHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHH--HHHHHHHHHHHHhCCCCeEEecCCceecccccC
Confidence 99999999999 3 46777899999999999999876 8999999999999999 7999
Q ss_pred CeEEEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 201 PIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISEKDLEAGLRLAHPEAVKYLEPQIR 274 (974)
Q Consensus 201 ~v~av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e~~~~~al~~a~~~~~~i~~~~~~ 274 (974)
+++||++|+++|++++|||++|++.++.+|+|++++++ ++|+++.+ +.|++++|.+||++|++++++++++|++
T Consensus 183 ~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 183 LPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp CCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999884 99998764 7899999999999999999999998765
No 36
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=7.8e-36 Score=322.38 Aligned_cols=202 Identities=20% Similarity=0.364 Sum_probs=183.1
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC--CC---CCCceeeEeeccccccccCCCCCccccccCCCCchh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DS---VRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERE 141 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~--~~---~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~e 141 (974)
=|++.+++|++ ++|+|||++++|+|+|||+|++|.+ ++ ..+..+|+++|....||.+. +|.|+|++++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~------r~~~~~~~re 98 (258)
T 3m7n_D 26 LRPIKIEASVL-KRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE------RKRPGPDRRS 98 (258)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS------CCCSSCCHHH
T ss_pred ccCeEEEECCC-CCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc------ccCCCCCHHH
Confidence 48899999999 9999999999999999999998766 22 34667899999888888753 3448899999
Q ss_pred hhHHHhhcCCcccccc-CCC-CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q 002054 142 LLVGRIIDRPIRPLFP-AGF-YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219 (974)
Q Consensus 142 il~~RlidR~lrplfp-~~~-~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldPt 219 (974)
++++|+|+|+|||+++ +.| ++.++|+|+||++||+.. +||+|||++||++++|||+++|+||++|+++|++++|||
T Consensus 99 ~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~--~Aai~aa~lAL~dagiP~~~~v~avsvg~i~~~~llDpt 176 (258)
T 3m7n_D 99 IEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSR--TACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPM 176 (258)
T ss_dssp HHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHH--HHHHHHHHHHHHHTTCCBSSEEEEEEEEEETTEEEESCC
T ss_pred HHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHH--HHHHHHHHHHHHhcCCCCCCceEEEEEEEECCEEEECCC
Confidence 9999999999999985 566 556899999999999886 999999999999999999999999999999999999999
Q ss_pred HHHHhcCccceeEee-eC----CeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 220 MDELSLSDLNLVYAC-TR----EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEK 278 (974)
Q Consensus 220 ~~e~~~s~~~l~v~~-t~----~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~ 278 (974)
++|++.++.||+|++ +. ++|+++|+.+ .|++++|.+||++|+++|++|++.|++.+++
T Consensus 177 ~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 239 (258)
T 3m7n_D 177 KEEDNFGEADMPFAFLIRNGKIESIALLQMDG-RMTRDEVKQAIELAKKGALQIYEMQREAILR 239 (258)
T ss_dssp HHHHHHSSEEEEEEEEEETTEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCceEEEEEEcCCCCCCCEEEEEecC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 54 5699999998 6999999999999999999999999998875
No 37
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-38 Score=336.98 Aligned_cols=197 Identities=17% Similarity=0.260 Sum_probs=160.9
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C---CCCCceeeEeeccccccccCCCCCccccccCCCCchhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D---SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKEREL 142 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~ei 142 (974)
=|++++|+|++ ++|||||++++|+|+|||+|++|.+ + ...+++||+|+|.+. .|+|+++
T Consensus 5 ~R~i~ie~g~l-~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l~v~~~p~--------------~G~~~~~-- 67 (222)
T 3krn_A 5 LREMRCELSFL-KNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRAN--------------CGDNKFN-- 67 (222)
T ss_dssp CCCBCCBSCCC-----CCCBCCBTTCEEECCCCSSCC-------------CCCSSCC--------------CC--CCS--
T ss_pred ccceEEEECCC-CCCCeEEEEEECCcEEEEEEECCCCCcccccCCceEEEEEEEcCC--------------CCCCCHH--
Confidence 38999999999 6899999999999999999999987 3 245789999999743 2667666
Q ss_pred hHHHhhcCCccccccCCCC--CceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCCH
Q 002054 143 LVGRIIDRPIRPLFPAGFY--HEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPTM 220 (974)
Q Consensus 143 l~~RlidR~lrplfp~~~~--~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldPt~ 220 (974)
+++|+|+|+|||+++...+ +.++|+++||++||+.. +||+|||++||++|||||+++|+||+||+++|++++|||+
T Consensus 68 e~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~--~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~ 145 (222)
T 3krn_A 68 VLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMG--AVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTA 145 (222)
T ss_dssp SCTTHHHHC--CCSCC-----CCCCCCCEEEECCSCHH--HHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCT
T ss_pred HHHHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChH--HHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCH
Confidence 8899999999997765443 47899999999999875 9999999999999999999999999999999999999999
Q ss_pred HHHhcCccceeEee-----eCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 002054 221 DELSLSDLNLVYAC-----TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQK 283 (974)
Q Consensus 221 ~e~~~s~~~l~v~~-----t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k 283 (974)
+|++.+++||+|++ +.++|+|+|+++ .|++++|.+||++|++++++++++|++++++..++.
T Consensus 146 ~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g-~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~~~~ 212 (222)
T 3krn_A 146 KQEAASTGRVLFSVCKGSDGHPEVCAMDAIG-HWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVD 212 (222)
T ss_dssp TTTTSCC-CCCCEECCCSSSSCCEEEECCBS-SCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhccCccEEEEEEccCCCCCCEEEEEEeC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999 456799999998 599999999999999999999999999998765433
No 38
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=1.2e-35 Score=321.36 Aligned_cols=202 Identities=18% Similarity=0.250 Sum_probs=182.2
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C---CCCCceeeEeeccccccccCCCCCccccc---c---CC
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D---SVRDFLPLTVDYQEKQFAQGVIPNTYMRR---E---GA 136 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~R---e---g~ 136 (974)
=|++.+++|.+ ++|+|||++++|+|+|||+|+++.+ | ++.+..+|+++| ++.|.++.+| | |+
T Consensus 11 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~-------~~~P~a~~~r~~Re~~~G~ 82 (255)
T 1udn_A 11 LRPVSIQRDFL-EYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEY-------SMLPRATQQRTIRESVQGR 82 (255)
T ss_dssp CCCEEEEECCS-SSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEE-------EECSCCTTSCCCCSSTTCS
T ss_pred ccCeEEEECCC-CCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEE-------EcCCCccccccccccCCCC
Confidence 48999999988 9999999999999999999999876 3 123455699999 4567666655 7 88
Q ss_pred CCchhhhHHHhhcCCccccccCCCCCc--eEEEEEEEeccCCCChhhHHHHHHHHHhhcCC-----------CCCCCCeE
Q 002054 137 PKERELLVGRIIDRPIRPLFPAGFYHE--VQVMASVLSSDGKQDPDIMAANATSAALMLSD-----------IPWGGPIG 203 (974)
Q Consensus 137 p~~~eil~~RlidR~lrplfp~~~~~~--~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~-----------iP~~~~v~ 203 (974)
|++++++++|+|+|+|||+||..++++ ++|+|+||++||+.. +||+|||++||++++ |||+++++
T Consensus 83 ~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~--~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v~ 160 (255)
T 1udn_A 83 IGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTR--TAAITGAFVAVADAIIKLHKEGIIEETPIKDFVA 160 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhhcchhcccCcccCCCccCcee
Confidence 999999999999999999999887777 999999999999986 999999999999888 99999999
Q ss_pred EEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEec--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 204 MIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQ--AREISEKDLEAGLRLAHPEAVKYLEPQIRLAEK 278 (974)
Q Consensus 204 av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~--~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~ 278 (974)
||++|+++|++++|||++|++.++.||+|+++.++ ++.+++. +..|++++|.+||++|++++++++++|++++++
T Consensus 161 avsvg~~~g~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 161 AVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEETTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEEEECCEEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887 7777753 468999999999999999999999999988765
No 39
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=1.6e-35 Score=324.55 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=184.0
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCC-CC--CCCCceeeEeeccccccccCCCCCccccccCCCCchhhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSK-GD--SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELL 143 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~-~~--~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~eil 143 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++. +| ...++.||+++|.++.||+++ +|+|+|++++++
T Consensus 39 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~------~~~g~~~~~~~~ 111 (277)
T 2je6_A 39 YRPLSITLDYA-KKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYET------FEPGPPDENAIE 111 (277)
T ss_dssp CCCEEEEETCS-TTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECTTSCTT------CCCSSCCHHHHH
T ss_pred ccCeEEEeCCc-CCCCeEEEEEECCeEEEEEEEeeeeCCCCCCCCccEEEEEEEeCCccCcc------cccCCCChHHHH
Confidence 58999999999 899999999999999999999543 33 356899999999999999854 357999999999
Q ss_pred HHHhhcCCccc---cccCCC-------CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCC------------------
Q 002054 144 VGRIIDRPIRP---LFPAGF-------YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD------------------ 195 (974)
Q Consensus 144 ~~RlidR~lrp---lfp~~~-------~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~------------------ 195 (974)
++|+|+|+||| ++++.| ++.++|+++||++||+.. +||+|||++||++++
T Consensus 112 is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~~p~v~~~~~~~~~~~~~~ 189 (277)
T 2je6_A 112 LARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVL--DACTLASVAALYNTKVYKVEQHSNGISVNKNEV 189 (277)
T ss_dssp HHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHH--HHHHHHHHHHHHTCEEEEEECC---CEEEEEEE
T ss_pred HHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhcCCCeEEecCCcceEeccCc
Confidence 99999999999 566664 789999999999999875 999999999999999
Q ss_pred ---CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 002054 196 ---IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISEKDLEAGLRLAHPEAVKYLE 270 (974)
Q Consensus 196 ---iP~~~~v~av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e~~~~~al~~a~~~~~~i~~ 270 (974)
+||+++++||++|+++|++++|||++|++.++.+|+|++++++ ++|+|+.+ ..|++++|.+|+++|+++++++++
T Consensus 190 ~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~g~~~~~~~~l~~~l~~A~~~~~~i~~ 269 (277)
T 2je6_A 190 VGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLE 269 (277)
T ss_dssp EEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEESSSCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEEeCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 99999864 579999999999999999999999
Q ss_pred HHHHHH
Q 002054 271 PQIRLA 276 (974)
Q Consensus 271 ~~~~~~ 276 (974)
.|++++
T Consensus 270 ~~~~~l 275 (277)
T 2je6_A 270 ELKKHL 275 (277)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 40
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=1.5e-35 Score=318.94 Aligned_cols=206 Identities=18% Similarity=0.193 Sum_probs=170.9
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C---CCCCceeeEeeccccccccCCCCCcccccc---CCCCc
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D---SVRDFLPLTVDYQEKQFAQGVIPNTYMRRE---GAPKE 139 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~Re---g~p~~ 139 (974)
=|++.+++|.+ ++|+|||++++|+|+|||+|+++.+ | .+.++.||+++|....||++. +.+|| |+|++
T Consensus 11 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~----~~~Re~~~G~~~~ 85 (245)
T 1oys_A 11 LRPITFDLDFI-SHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQ----QTIQESSKGKISG 85 (245)
T ss_dssp CCCEEEECC------CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC-----------------------C
T ss_pred cCCeEEEeCCC-CCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcc----cccccccCCCCch
Confidence 48999999999 7999999999999999999999887 4 356889999999999999874 47787 89999
Q ss_pred hhhhHHHhhcCCccccccCC--CCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCC-----------CCCCCCeEEEE
Q 002054 140 RELLVGRIIDRPIRPLFPAG--FYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD-----------IPWGGPIGMIR 206 (974)
Q Consensus 140 ~eil~~RlidR~lrplfp~~--~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~-----------iP~~~~v~av~ 206 (974)
++++++|+|+|+|||+++.. +.+.++|+|+||++||+.. +||+|||++||++++ +||+++|+||+
T Consensus 86 ~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v~avs 163 (245)
T 1oys_A 86 RTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTR--TASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAIS 163 (245)
T ss_dssp HHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhccchhcccCcccccCCCCceeEEE
Confidence 99999999999999999865 5678999999999999866 999999999999999 99999999999
Q ss_pred EEEECCEEE-EcCCHHHHhcCccceeEeeeCCe-EEEEEecC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002054 207 IGRICGQFI-VNPTMDELSLSDLNLVYACTREK-TLMIDVQA--REISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA 279 (974)
Q Consensus 207 vg~i~g~~v-ldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~--~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~ 279 (974)
+|+++|+++ +|||++|++.++.||+|+++.++ ++++|+.+ ..|++++|.++|++|+++++++++.|++.+++.
T Consensus 164 ~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (245)
T 1oys_A 164 VGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDS 240 (245)
T ss_dssp EEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEECCEEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 99999999999999999999887 99999865 579999999999999999999999999887653
No 41
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.1e-35 Score=316.81 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=171.1
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC--CCCCCceeeEeeccccccccCCCCCccccccCCCCchhhhH
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--DSVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELLV 144 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~--~~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~eil~ 144 (974)
=|++++++|.+ ++|+|||++++|+|+|||+|++|.+ +.+..+.+.+++|. |+ | +.|+|+++++++
T Consensus 14 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~~---~~----P-----~~g~~~~~~~e~ 80 (246)
T 3hkm_A 14 LRPFSCTRNPL-DRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVV---WK----P-----MTGQIGKQEKEY 80 (246)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEE---EE----C-----SSSCCCTTHHHH
T ss_pred cCCeEEEECCC-CCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEEEEE---eC----C-----CCCCCChhHHHH
Confidence 48999999999 7999999999999999999998765 34445566777774 21 3 358999999999
Q ss_pred HHhhcCCcccccc-CCC-CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEE-CCEEEEcCCHH
Q 002054 145 GRIIDRPIRPLFP-AGF-YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRI-CGQFIVNPTMD 221 (974)
Q Consensus 145 ~RlidR~lrplfp-~~~-~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i-~g~~vldPt~~ 221 (974)
+|+|+|+|||+++ .+| .+.++|+|+||++||+.. +||+|||++||++++|||+++|+||++|++ +|++++|||++
T Consensus 81 ~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~--~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~llDpt~~ 158 (246)
T 3hkm_A 81 EMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLL--PCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKA 158 (246)
T ss_dssp HHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCEEESCCHH
T ss_pred HHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHH--HHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEEEECCCHH
Confidence 9999999999999 455 789999999999999876 999999999999999999999999999998 89999999999
Q ss_pred HHhcCccceeEeeeCCe------------------EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 002054 222 ELSLSDLNLVYACTREK------------------TLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAG 280 (974)
Q Consensus 222 e~~~s~~~l~v~~t~~~------------------i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g 280 (974)
|++.+++|++|+++.++ ++|++. .+.|++++|.+|+++|++++++|+++|++.+++..
T Consensus 159 Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~~~~~i~~~~-~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 234 (246)
T 3hkm_A 159 EEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSIT-HGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQA 234 (246)
T ss_dssp HHTTCSEEEEEEEEC--------------------CCCEEE-EECEEHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHhcCCeeEEEEEeCCceEEEeecccccccccccceeeeec-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998764 444443 35699999999999999999999999998876554
No 42
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.4e-35 Score=321.18 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=186.5
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CCC--CCceeeEeeccccccccCCCCCccccccCCCCchhhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DSV--RDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELL 143 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~~--~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~eil 143 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++.+ |.. .++.||+++|.++.||+++ | |+|+|++++++
T Consensus 34 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~----~--~~g~~~~~~~~ 106 (278)
T 2nn6_C 34 FRTTTVNIGSI-STADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSR----F--RSGPPGEEAQV 106 (278)
T ss_dssp CCSCCEEETCC-SSSSEEEEEEETTEEEEEEEEEEECCCCSSSTTCCCCEEEEECCSSSCTT----S--CSSSCCHHHHH
T ss_pred ccCeEEEeCCc-cCCCceEEEEeCCeEEEEEEEEEeecCCCCCCCccEEEEEEEeCCccCcc----c--cCCCCcHHHHH
Confidence 47899999999 8999999999999999999999766 332 4889999999999999975 2 56999999999
Q ss_pred HHHhhcCCccc--cc--------cCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCC-----------------
Q 002054 144 VGRIIDRPIRP--LF--------PAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDI----------------- 196 (974)
Q Consensus 144 ~~RlidR~lrp--lf--------p~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~i----------------- 196 (974)
++|+|+|+||| +| |..|++.++|+++||++||+.. +||+|||++||++++|
T Consensus 107 ~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~iP~v~~~~~~~~~~~~~~ 184 (278)
T 2nn6_C 107 ASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNIL--DACTFALLAALKNVQLPEVTINEETALAEVNLK 184 (278)
T ss_dssp HHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTT--HHHHHHHHHHHHTCCCCCCCBCSSSBCCCTTSC
T ss_pred HHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhCCCCeEEEeCCCcceecCcc
Confidence 99999999995 66 5678999999999999999987 9999999999999996
Q ss_pred -----CCCCCeEEEEEEEECC-EEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 002054 197 -----PWGGPIGMIRIGRICG-QFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISEKDLEAGLRLAHPEAVKY 268 (974)
Q Consensus 197 -----P~~~~v~av~vg~i~g-~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e~~~~~al~~a~~~~~~i 268 (974)
||+++++||++|+++| ++++|||++|++.++.+|+|++++++ ++|+|+.+ ..|++++|.+||++|+++++++
T Consensus 185 ~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~g~~~~~~~~l~~~l~~a~~~~~~i 264 (278)
T 2nn6_C 185 KKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEV 264 (278)
T ss_dssp CCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEECTTCCEEEEEESCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEEcCCCcEEEEEccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 99999999999999999999999885 99999977 4699999999999999999999
Q ss_pred HHHHHHHHHH
Q 002054 269 LEPQIRLAEK 278 (974)
Q Consensus 269 ~~~~~~~~~~ 278 (974)
++.|++++++
T Consensus 265 ~~~~~~~l~~ 274 (278)
T 2nn6_C 265 KKLMDEVIKS 274 (278)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 43
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=2.4e-34 Score=310.11 Aligned_cols=203 Identities=18% Similarity=0.321 Sum_probs=182.5
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC--C---CCCCceeeEeeccccccccCCCCCccccccCCCCchh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--D---SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERE 141 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~--~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~e 141 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|++|.+ + ...++.||+++|....||++.. +.+.|++++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~------~~~~~~~~~ 98 (249)
T 2po1_A 26 LRPIKMEVGVL-KNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEER------KKPGPDRRS 98 (249)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSC------CCSSCCHHH
T ss_pred ccCEEEEeCCc-CCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccc------cCCCCCHHH
Confidence 48899999999 8999999999999999999999766 2 2568899999999999999732 235699999
Q ss_pred hhHHHhhcCCccccccCCCC--CceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q 002054 142 LLVGRIIDRPIRPLFPAGFY--HEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219 (974)
Q Consensus 142 il~~RlidR~lrplfp~~~~--~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldPt 219 (974)
++++|+|+|+|||.++...+ +.++|+++||++||+.. +||+|||++||++++|||+++|+||++|+++|++++|||
T Consensus 99 ~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~--~aai~aa~~AL~da~iP~~~~v~avs~g~~~~~~l~Dp~ 176 (249)
T 2po1_A 99 IEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTR--VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLN 176 (249)
T ss_dssp HHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHH--HHHHHHHHHHHHHTTCCBSSCCEEEEEEEETTEEEESCC
T ss_pred HHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHH--HHHHHHHHHHHHhcCCCccCceEEEEEEEECCEEEecCc
Confidence 99999999999995543222 36999999999999865 999999999999999999999999999999999999999
Q ss_pred HHHHhcCccceeEee--eCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002054 220 MDELSLSDLNLVYAC--TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA 279 (974)
Q Consensus 220 ~~e~~~s~~~l~v~~--t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~ 279 (974)
++|++.++.+|+|++ +.++++++|+.++ |++++|.+||++|+++++++++.|++.+++.
T Consensus 177 ~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~-~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (249)
T 2po1_A 177 KEEDNYGEADVPVAIMPLKNDITLLQMDGY-LTKDEFIEAVKLAIKGAKAVYQKQREALKEK 237 (249)
T ss_dssp HHHHHTCSEEEEEEEEGGGTEEEEECCEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCceEEEEEECCCCCEEEEEEEcc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 5677999999984 9999999999999999999999999988764
No 44
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=5.9e-34 Score=341.85 Aligned_cols=215 Identities=19% Similarity=0.239 Sum_probs=189.2
Q ss_pred ccCeEEEeCCCC-CCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCcc-----ccccccCCC
Q 002054 379 VRPIYCESGNLP-ILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCIN-----EVGKRVGLN 452 (974)
Q Consensus 379 ~R~I~ie~g~l~-~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~-----e~~~~~~~~ 452 (974)
-|++++++|.+. +|+||++++.|+|+|||+|+.. ..++ .+.++.+++++|....|+.| ..+|.|.|+
T Consensus 27 ~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~--~~~~-----~g~df~pltveY~ek~~a~G~iPg~~~~REGrps 99 (726)
T 4aid_A 27 GKTLVLETGRIARQADGAVLATMGETVVLATAVFA--KSQK-----PGQDFFPLTVNYQEKTFAAGKIPGGFFKREGRPS 99 (726)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEEC--SSCC-----TTCCSCCEEEEEEECGGGGTCCCCSTTCSCCSCC
T ss_pred CeeEEEEECCccCCCCeeEEEEECCeEEEEEEEec--CCCC-----CCCCCcCceeeeeeehhhcccCCCcccCCCCCCC
Confidence 478999999887 5999999999999999999943 3211 13456779999987777665 346779999
Q ss_pred chhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCChh--hHHHHHHHHHHHHcCCCccccccceeeeeeccCCCC
Q 002054 453 RREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGSTS--MATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPS 530 (974)
Q Consensus 453 rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~~--~A~v~aa~lAL~dagvPi~~~vagvs~gli~~~d~~ 530 (974)
.||+.+++|+.|+|+|++|. .|-|.++|+++||+.||+.. .||++||++||+++++|++++++||++|++++
T Consensus 100 ~~~~li~RlIdR~lRplf~~--~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g---- 173 (726)
T 4aid_A 100 EKETLVSRLIDRPIRPLFVK--GFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDG---- 173 (726)
T ss_dssp HHHHHHHHHHHHHHGGGBCT--TCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETT----
T ss_pred chhhhHHHHhCCcccccccc--CCccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECC----
Confidence 99999999999999999995 67889999999999999764 78999999999999999999999999999875
Q ss_pred CCcccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002054 531 TGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAPRTQD 610 (974)
Q Consensus 531 ~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~~~~~ 610 (974)
.+++||+..|+..++++++|++|.++++++|..+ ..++.++|.+||+.|++++..|++.+++++.+..+++
T Consensus 174 -------~~vldPt~~E~~~s~~dl~va~t~~~i~mve~~~--~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~~k 244 (726)
T 4aid_A 174 -------AYVLNPTLDEMKESKMDLVVAGTADAVMMVESEI--QELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEP 244 (726)
T ss_dssp -------EEEESCCHHHHHTCSEEEEEEECSSCEEEEEEEE--SSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCC
T ss_pred -------EEEECCCHHHHhhCceeEEEEEeCCeEEEEEccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6999999999999999999999999998888654 5799999999999999999999999999999887776
Q ss_pred CCCCC
Q 002054 611 DRNSP 615 (974)
Q Consensus 611 ~~~~p 615 (974)
..+.|
T Consensus 245 ~~~~~ 249 (726)
T 4aid_A 245 FAFEP 249 (726)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 66654
No 45
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=4.9e-36 Score=317.64 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=159.8
Q ss_pred CCCccCeEEEeCCCCCCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccccccccCCCchh
Q 002054 376 LDEVRPIYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINEVGKRVGLNRRE 455 (974)
Q Consensus 376 ~~e~R~I~ie~g~l~~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e~~~~~~~~rre 455 (974)
.+|+|+|++++|+++++||||+|++|+|+|+|+|+ +|.+.+..+ ...+++.++|+|+|++. .++++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~--~~~e~~~~~----~~~~~~~l~v~~~p~~G-------~~~~~- 67 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCS--GPGDVHASK----ASDEAMTLDISYRANCG-------DNKFN- 67 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCC--SSCC-----------------CCCSSCCCC---------CCS-
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEE--CCCCCcccc----cCCceEEEEEEEcCCCC-------CCCHH-
Confidence 57999999999999999999999999999999999 777654321 23456778999998752 23333
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCe-EEEEEEEEEcCCCChhhHHHHHHHHHHHHcCCCccccccceeeeeeccCCCCCCcc
Q 002054 456 VGHGTLAEKALLAVLPPENDFPY-TVRVNSEVMASDGSTSMATVCGGSMALMDAGIPLQEHVAGVSVGLVSEVDPSTGEI 534 (974)
Q Consensus 456 ~~~~~l~eral~~vi~~~~~~p~-tI~V~v~VLesdGs~~~A~v~aa~lAL~dagvPi~~~vagvs~gli~~~d~~~~~~ 534 (974)
+++++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+||||||+++|+|+++|++++
T Consensus 68 -e~~~li~r~l~~~i~~-~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g-------- 137 (222)
T 3krn_A 68 -VLNNIIHSTLSNAINL-ELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKD-------- 137 (222)
T ss_dssp -SCTTHHHHC--CCSCC------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSS--------
T ss_pred -HHHHHHHHHHHHhccH-HhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECC--------
Confidence 7899999999999998 78996 799999999999999999999999999999999999999999999754
Q ss_pred cceEEEecCCccccccCCccEEEEe---e--CCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002054 535 KDYRILTDILGLEDHLGDMDFKIAG---T--RIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHMEREISAP 606 (974)
Q Consensus 535 ~~~~iL~Dp~~~Ee~~~d~d~~Va~---t--~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m~~~i~~~ 606 (974)
.+|+||+..|++.++++++|++ + .++|+++|+++ .++.++|.+|+++|++++.+|++.|++++++.
T Consensus 138 ---~~llDpt~~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g---~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 208 (222)
T 3krn_A 138 ---ELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIG---HWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK 208 (222)
T ss_dssp ---SEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCBS---SCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ---EEEeCCCHHHHhccCccEEEEEEccCCCCCCEEEEEEeC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999 4 46799999974 59999999999999999999999999999864
No 46
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.4e-33 Score=340.61 Aligned_cols=244 Identities=16% Similarity=0.226 Sum_probs=198.8
Q ss_pred CCcCCCCCCCCccCeEEEeCCCC-CCCcceEEEeCCeEEEEEEEeCCCchhhhccccCCCCceeEEEEEecCCCCccc--
Q 002054 368 GVRVDGRQLDEVRPIYCESGNLP-ILHGSSLFSRGDTQVLCTVTLGAPAEAQRLESLVGPPTKRFMLHYSFPPFCINE-- 444 (974)
Q Consensus 368 ~~R~DGR~~~e~R~I~ie~g~l~-~a~GSal~~~G~T~Vl~~Vtl~~p~~~~~~d~~~~~~~~~~~v~~~f~p~s~~e-- 444 (974)
.++.+|| ++++++|.+. +|+|||+++.|+|+|||+|+.. .+++ ++.++.+++++|.-..|+.|.
T Consensus 14 ~~~~~~r------~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~--~~~~-----~~~~f~pltv~y~ek~~a~g~ip 80 (723)
T 3cdi_A 14 KFQYGQH------TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQ--KKAK-----PGQDFFPLTVNYQERTYAAGRIP 80 (723)
T ss_dssp EEEETTE------EEEEEESSSCTTSSEEEEEEETTEEEEEEEEEC--SSCC-----SSCCSCCEEEEEEECGGGGTCCC
T ss_pred EEEECCE------EEEEEeCccccCCCeeEEEEECCEEEEEEEEec--CCCC-----CCCCeeeEEEEEeEeccccccCC
Confidence 3455555 8999999885 7999999999999999999944 2221 234667799999987777765
Q ss_pred ---cccccCCCchhhhHHHHHHHHhhhcCCCCCCCCeEEEEEEEEEcCCCCh--hhHHHHHHHHHHHHcCCCccccccce
Q 002054 445 ---VGKRVGLNRREVGHGTLAEKALLAVLPPENDFPYTVRVNSEVMASDGST--SMATVCGGSMALMDAGIPLQEHVAGV 519 (974)
Q Consensus 445 ---~~~~~~~~rre~~~~~l~eral~~vi~~~~~~p~tI~V~v~VLesdGs~--~~A~v~aa~lAL~dagvPi~~~vagv 519 (974)
.+|.|.|+.+|+..++|++|+|+|++|. .|.|.++|+++||+.||+. ..||++||++||+.+++|+.++++||
T Consensus 81 g~f~kReGrpse~e~l~sRlIdR~lRplfp~--~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av 158 (723)
T 3cdi_A 81 GSFFRREGRPSEGETLIARLIDRPIRPLFPE--GFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAA 158 (723)
T ss_dssp C-------CCCHHHHHHHHHHHHHHGGGSCT--TCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCE
T ss_pred CccccCCCCCChHHhHHHHHhCccchhcccc--cCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEE
Confidence 4678999999999999999999999994 6889999999999999997 56999999999999999999999999
Q ss_pred eeeeeccCCCCCCcccceEEEecCCccccccCCccEEEEeeCCceEEEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002054 520 SVGLVSEVDPSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRIGVTAIQLDIKPAGIPLDIICECLEHAHKGRLQILDHM 599 (974)
Q Consensus 520 s~gli~~~d~~~~~~~~~~iL~Dp~~~Ee~~~d~d~~Va~t~~gI~alq~~~k~~~i~~e~l~~al~~A~~~~~~I~~~m 599 (974)
++|++++ .+++||+..|+..++++++|++|.+++.++|..+ ..+++++|.+||+.|+++++.|++.+
T Consensus 159 ~vg~i~g-----------~~v~nPt~~e~~~s~~~lvvagt~~~i~mve~~~--~~~se~~~~~al~~a~~~~~~l~~~~ 225 (723)
T 3cdi_A 159 RVGYIND-----------QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA--QLLSEDQMLGAVVFGHEQQQVVIQNI 225 (723)
T ss_dssp EEEEETT-----------EEEESCCTTGGGGCSEEEEEEECSSCEEEEEEEE--EEECHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EEEEECC-----------EEEECcCHHHHHhCCceEEEEccCCEEEEEeCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999975 5999999999999999999999999998888654 46999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCccee--e-----eeccchhhhhcCCCccchh
Q 002054 600 EREISAPRTQDDRNSPRLAT--L-----KYDNDTLRRLIGPLGALKR 639 (974)
Q Consensus 600 ~~~i~~~~~~~~~~~p~~~~--~-----~i~~~ki~~vIg~gGk~i~ 639 (974)
++++.+..+++..+.+.... + ..-.+++.+.+-..+|.-|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 272 (723)
T 3cdi_A 226 NELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQER 272 (723)
T ss_dssp HHHHHHTCCCCCCCCCCCCCTTGGGSSTTTTHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 99998887766665432111 1 0122456666655555555
No 47
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.2e-33 Score=302.71 Aligned_cols=206 Identities=18% Similarity=0.227 Sum_probs=184.7
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCCC------CCCCceeeEeeccccccccCCCCCccccccCCCCch
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKGD------SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKER 140 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~~------~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~ 140 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|++|.++ ...++.+|+++|....||++. .+|.|+|+++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~-----~~~~~~~~~~ 99 (249)
T 2nn6_B 26 LRKIQARMGVF-AQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGE-----RKRRPHGDRK 99 (249)
T ss_dssp CCCEEEEESCS-SSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSS-----CCCTTTSTHH
T ss_pred cCCeEEEeCCC-CCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcccc-----cccCCCCCHh
Confidence 48999999999 89999999999999999999998763 245678999999999888863 2334789999
Q ss_pred hhhHHHhhcCCccccccCC-CC-CceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcC
Q 002054 141 ELLVGRIIDRPIRPLFPAG-FY-HEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNP 218 (974)
Q Consensus 141 eil~~RlidR~lrplfp~~-~~-~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldP 218 (974)
+++++|+|+|+|||.++.. |. +.++|+|+||++||+.. +||+|||++||++++|||+++|+||++|+++|++++||
T Consensus 100 ~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~--~A~i~aa~~AL~da~iPl~~~v~avs~g~~~~~~l~Dp 177 (249)
T 2nn6_B 100 SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTY--AACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADL 177 (249)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHH--HHHHHHHHHHHHHTCCCCSSCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhcCCcccCCeeeEEEEEECCeEEECC
Confidence 9999999999999998844 32 35889999999999877 99999999999999999999999999999999999999
Q ss_pred CHHHHhcCccceeEee--eCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002054 219 TMDELSLSDLNLVYAC--TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK 281 (974)
Q Consensus 219 t~~e~~~s~~~l~v~~--t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~ 281 (974)
|++|++.++.+|+|+. +.++++++|+.+. |+.++|.+++++|.+++++|++.|++.+++..+
T Consensus 178 ~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~-~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 241 (249)
T 2nn6_B 178 SHVEEAAGGPQLALALLPASGQIALLEMDAR-LHEDHLERVLEAAAQAARDVHTLLDRVVRQHVR 241 (249)
T ss_dssp CHHHHTSSCCCEEEEEETTTTEEEEEEECSC-CBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhccCCcEEEEEEECCCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 4567999999974 999999999999999999999999998877643
No 48
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.5e-33 Score=308.81 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=178.9
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C----CCCCceeeEeeccccccccCCCCCccccccCCC-Cch
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D----SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAP-KER 140 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~----~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p-~~~ 140 (974)
=|++.+++|.+ .+|+|||++++|+|+|||+|+++.. | ++.+|++++|+|.+. |++ +| +|+| +++
T Consensus 46 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~v~~~p~--a~~----~~---~~r~~~~~ 115 (305)
T 2nn6_E 46 YRCVEVETDVV-SNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSAS--ATP----EF---EGRGGDDL 115 (305)
T ss_dssp CCCCEEEECCC-TTSSSEEEEEETTEEEEEECCCCCSCCCSSSCSSCCEEEECCCCTT--TCS----SC---CTTSTHHH
T ss_pred ccCeEEEeCcc-cCCCcEEEEEECCeEEEEEEEEEeeCCCcCCCCceEEEEEEEeCCC--cCc----cc---cCCCCchH
Confidence 47899999999 6999999999999999999999755 3 456888899988775 443 23 4554 589
Q ss_pred hhhHHHhhcCCccc----------cccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCC----------
Q 002054 141 ELLVGRIIDRPIRP----------LFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGG---------- 200 (974)
Q Consensus 141 eil~~RlidR~lrp----------lfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~---------- 200 (974)
+++++|+|+|+||| +||+.|.|.++|+|+||++||+.. .||+|||++||++++||+..
T Consensus 116 ~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~--daai~aa~~AL~~a~iP~~~~~~~~~~~~~ 193 (305)
T 2nn6_E 116 GTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLF--DAISIAVKAALFNTRIPRVRVLEDEEGSKD 193 (305)
T ss_dssp HHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHH--HHHHHHHHHTTTTCCCCEEEEECC------
T ss_pred HHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhcCCCeEEEecCCCCcee
Confidence 99999999999999 999999999999999999999655 78999999999999999542
Q ss_pred -----------------CeEEEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEe-cCCCCCHHHHHHHHHHH
Q 002054 201 -----------------PIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDV-QAREISEKDLEAGLRLA 261 (974)
Q Consensus 201 -----------------~v~av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~-~~~~~~e~~~~~al~~a 261 (974)
+++||++|+++|++++|||++|++.++++|+|++++++ |+|+++ ++..|++++|.+||++|
T Consensus 194 i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~i~~~g~~~l~~~~l~~~l~~A 273 (305)
T 2nn6_E 194 IELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETG 273 (305)
T ss_dssp EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEEESSCBCHHHHHHHHHHH
T ss_pred eeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999886 888884 45679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 002054 262 HPEAVKYLEPQIRLAEKAGK 281 (974)
Q Consensus 262 ~~~~~~i~~~~~~~~~~~g~ 281 (974)
+++++++++.|++++++..+
T Consensus 274 ~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 274 KRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887543
No 49
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.1e-32 Score=293.49 Aligned_cols=203 Identities=19% Similarity=0.276 Sum_probs=181.4
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC--C---CCCCceeeEeeccccccccCCCCCccccccCCCCchh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG--D---SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERE 141 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~--~---~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~e 141 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|++|.+ + ...+..+|+++|....||.+.. +.|+|++++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~------~~~~~~~~~ 98 (240)
T 2wnr_B 26 LRPLKIEAGIL-ERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEER------KRPGPDRRS 98 (240)
T ss_dssp CCCEEEEESCC-SSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSC------CCSSCCHHH
T ss_pred ccCeEEEeCCC-CCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCc------cCCCCChhH
Confidence 58999999999 7999999999999999999999765 3 2457789999999888887632 247899999
Q ss_pred hhHHHhhcCCccccccCCCCC--ceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q 002054 142 LLVGRIIDRPIRPLFPAGFYH--EVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICGQFIVNPT 219 (974)
Q Consensus 142 il~~RlidR~lrplfp~~~~~--~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g~~vldPt 219 (974)
++++|+|+|+||+.++...++ .++|+++||++||+.. +||+|||++||++++|||+++++||++|++++.+++|||
T Consensus 99 ~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~--~a~i~aa~~AL~da~iP~~~~v~avs~g~~~~~~l~Dp~ 176 (240)
T 2wnr_B 99 VEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTR--CAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLS 176 (240)
T ss_dssp HHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHH--HHHHHHHHHHHHHTTCCBSSCCEEEEEEESSSSEEESCC
T ss_pred HHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHcCCccccceeeEEEEEECCEEEeCCC
Confidence 999999999999988755444 5778889999999877 999999999999999999999999999999999999999
Q ss_pred HHHHhcCccceeEee--eCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002054 220 MDELSLSDLNLVYAC--TREKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA 279 (974)
Q Consensus 220 ~~e~~~s~~~l~v~~--t~~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~ 279 (974)
++|+..++.+++|+. +.++++++++.++ |+.++|.+++++|.++++++++.|++.+++.
T Consensus 177 ~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~-~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 177 EEEDKEGQADVPVAILPRTREITLLQSDGN-LTPEEFERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp SHHHHSCSEEEEEEEETTTTEEEEEEEEEC-BCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCceEEEEEECCCCCEEEEEEEcc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999996 4566999999986 9999999999999999999999999987643
No 50
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.6e-32 Score=293.88 Aligned_cols=195 Identities=18% Similarity=0.178 Sum_probs=172.3
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CC---CCCceeeEeeccccccccCCCCCccccccCCCCchhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DS---VRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKEREL 142 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~---~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~ei 142 (974)
-|++.+++|.+ .+|+|||++++|+|+|||+|++|.+ ++ ..+.++|+++|.+. .|+|+++|+
T Consensus 30 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~~p~--------------~g~~~~~e~ 94 (237)
T 2nn6_D 30 LRHFACEQNLL-SRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPK--------------IGLPGVAEK 94 (237)
T ss_dssp CCCEEEEESCC-SSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEEECS--------------SSCCCHHHH
T ss_pred ccceEEEeCCC-CCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEEEecCC--------------CCCCCccHH
Confidence 58999999999 7899999999999999999999887 32 35667999998642 278999999
Q ss_pred hHHHhhcCCcccccc-CCC-CCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEE-CCEEEEcCC
Q 002054 143 LVGRIIDRPIRPLFP-AGF-YHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRI-CGQFIVNPT 219 (974)
Q Consensus 143 l~~RlidR~lrplfp-~~~-~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i-~g~~vldPt 219 (974)
+++|+|+|+|||+++ .+| ++.++|+|+||++||+.. +||+|||++||++++|||+++|+||++|++ +|++++||+
T Consensus 95 ~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~--~aai~aa~~AL~da~iP~~~~v~avs~g~~~~~~~llDp~ 172 (237)
T 2nn6_D 95 SRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLL--ACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPT 172 (237)
T ss_dssp HHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCCSSCEEEEEEEECTTCCEEESCC
T ss_pred HHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHH--HHHHHHHHHHHHHcCCCcccCeeeEEEEEecCCcEEeCCC
Confidence 999999999999998 455 449999999999999876 999999999999999999999999999999 899999999
Q ss_pred HHHHhcCccceeEeeeC--CeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002054 220 MDELSLSDLNLVYACTR--EKTLMIDVQAREISEKDLEAGLRLAHPEAVKYLEPQIRLAEKA 279 (974)
Q Consensus 220 ~~e~~~s~~~l~v~~t~--~~i~mie~~~~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~ 279 (974)
+.|++.++.+|+|+.+. ++++++|+.+ .|++++|.+++++|.+++++|++.|++.+++.
T Consensus 173 ~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 173 SKQEKEARAVLTFALDSVERKLLMSSTKG-LYSDTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp HHHHHHCSEEEEEEEETTTCCCCEEEEEE-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCceEEEEcCCCCCEEEEEEeC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999976666666554 5699999976 59999999999999999999999999988764
No 51
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.98 E-value=2.1e-32 Score=307.90 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=176.3
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C----CCCCceeeEeeccccccccCCCCCcccc-ccCCCCch
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D----SVRDFLPLTVDYQEKQFAQGVIPNTYMR-REGAPKER 140 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~----~~~~f~pL~v~y~e~~~a~g~ip~~~~~-Reg~p~~~ 140 (974)
-|++.+++| +|+|||++++|+|+|||+|+++.+ | ++.+|++++|+|.+ +++.+ |+|+|+++
T Consensus 49 ~R~i~ie~g----~A~GSa~v~~G~T~VL~tV~~e~~~p~~~~~~~g~l~~~v~~~p---------~a~~~~~~g~~s~~ 115 (358)
T 2nn6_A 49 YRNIRISFG----TDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQ---------MAAPAFEPGRQSDL 115 (358)
T ss_dssp CCCCEEEEC----SSTTEEEEESSSCEEEEEECCEEECCCSTTTTSCCEEEEEEECT---------TTCSSCCSSSTHHH
T ss_pred cCCeEEEEe----cCCcEEEEEECCcEEEEEEEecccCCcccCCCCcEEEEEEEecC---------CccccccCCCCCHH
Confidence 478999999 899999999999999999998764 3 35677777777744 33333 56999999
Q ss_pred hhhHHHhhcCCccc----------cccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCC-------------
Q 002054 141 ELLVGRIIDRPIRP----------LFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIP------------- 197 (974)
Q Consensus 141 eil~~RlidR~lrp----------lfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP------------- 197 (974)
+++++|+|+|+||| +||..+++.++|+|+||++||+.. .||++||++||+++++|
T Consensus 116 e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~--dAai~Aa~aAL~da~iP~v~~~~~~v~i~~ 193 (358)
T 2nn6_A 116 LVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNII--DAASIAAIVALCHFRRPDVSVQGDEVTLYT 193 (358)
T ss_dssp HTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCH--HHHHHHHHHHHHHCCCCCCBCCTTCCBCCH
T ss_pred HHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHhCcCcEEeeCCeeEecc
Confidence 99999999999999 478889999999999999999776 79999999999999999
Q ss_pred ----------CCCCeEEEEEEEE--CCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCHHHHHHHHHHHHH
Q 002054 198 ----------WGGPIGMIRIGRI--CGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISEKDLEAGLRLAHP 263 (974)
Q Consensus 198 ----------~~~~v~av~vg~i--~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e~~~~~al~~a~~ 263 (974)
|+++++||++|++ ++++++|||++|++.++.+|+|+++.++ ++|+|..+ ..|++++|.+||++|++
T Consensus 194 ~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~t~~g~I~~lqk~G~~~ls~~~l~~~l~~A~~ 273 (358)
T 2nn6_A 194 PEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGV 273 (358)
T ss_dssp HHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEESCCCCCHHHHHHHHHHHHH
T ss_pred cccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEEcCCCeEEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999976 8999999999999999999999999886 99999544 46999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 002054 264 EAVKYLEPQIRLAEKA 279 (974)
Q Consensus 264 ~~~~i~~~~~~~~~~~ 279 (974)
++++|++.|++++++.
T Consensus 274 ~~~~i~~~~~~~l~~~ 289 (358)
T 2nn6_A 274 KVAEITELILKALEND 289 (358)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999988763
No 52
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=99.97 E-value=2e-31 Score=291.91 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=183.2
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEe-CCCC--CCCCceeeEeeccccccccCCCCCccccccCCCCchhhh
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTS-SKGD--SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKERELL 143 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~-~~~~--~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~~eil 143 (974)
-|++.+++|.+ ++|+|||++++|+|+|||+|+. +.+| ...+..+++++|....||.+.. +.|+|++++++
T Consensus 36 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~~~~~p~a~~~~------~~g~~~~~~~~ 108 (277)
T 2po1_B 36 YRPIEIEVGVI-EKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTF------EPGPPDERAIE 108 (277)
T ss_dssp CCCEEEEECCS-TTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTSCEEEEEEEECGGGCTTC------CSSSCCHHHHH
T ss_pred cCCeEEEeCCc-CCCCeEEEEEECCeEEEEEEEecccCCCCCCCCceEEEEEEEeCCCccccc------cCCCCChHHHH
Confidence 48999999999 7899999999999999999994 4343 2346678999998888887531 34899999999
Q ss_pred HHHhhcCCccc----------cccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCC------------------
Q 002054 144 VGRIIDRPIRP----------LFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSD------------------ 195 (974)
Q Consensus 144 ~~RlidR~lrp----------lfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~------------------ 195 (974)
++|+|+|+||+ ++|..+.+.++|+|+||++||+.. +||+|||++||++++
T Consensus 109 l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~--~a~i~aa~~AL~da~~p~~~~~~~~~~~~~~~~ 186 (277)
T 2po1_B 109 LARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLM--DAIGIAAIAALLNARVPKVRYNEETGEVETLDE 186 (277)
T ss_dssp HHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHCEEEEEEECTTTCCEEEEEE
T ss_pred HHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhcCCCcEEEeCCCceeecccc
Confidence 99999999998 356777789999999999999876 999999999999999
Q ss_pred ---CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 002054 196 ---IPWGGPIGMIRIGRICGQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISEKDLEAGLRLAHPEAVKYLE 270 (974)
Q Consensus 196 ---iP~~~~v~av~vg~i~g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e~~~~~al~~a~~~~~~i~~ 270 (974)
+||+++++||++|++++.+++|||++|++.++.+|+|+++.++ ++++++.| ..|+.++|.+++++|.++++++++
T Consensus 187 ~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~lq~~g~~~~~~~~l~~~l~~A~~~~~~l~~ 266 (277)
T 2po1_B 187 TEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRK 266 (277)
T ss_dssp EEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTSCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999877 99999864 579999999999999999999999
Q ss_pred HHHHHHHHh
Q 002054 271 PQIRLAEKA 279 (974)
Q Consensus 271 ~~~~~~~~~ 279 (974)
.|++.+++.
T Consensus 267 ~~~~~l~~~ 275 (277)
T 2po1_B 267 LILEAVEKA 275 (277)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999988764
No 53
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=319.83 Aligned_cols=214 Identities=21% Similarity=0.261 Sum_probs=191.8
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-CC-----------CCCceeeEeeccccccccCCCCCcccccc
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-DS-----------VRDFLPLTVDYQEKQFAQGVIPNTYMRRE 134 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~~-----------~~~f~pL~v~y~e~~~a~g~ip~~~~~Re 134 (974)
=|++.+++|.+ ++|+|||++++|+|+|||+|+++.. +. +.+..+++++|....||++.. +|-
T Consensus 328 lRpi~i~~g~l-~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~-----~~~ 401 (630)
T 3u1k_A 328 LRNVSCEVDMF-KTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEI-----GKV 401 (630)
T ss_dssp CCCEEEEECCS-TTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCC-----CCC
T ss_pred ccceEEEECCC-CCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCccccc-----ccC
Confidence 37899999999 8999999999999999999998654 32 234458999999999998632 233
Q ss_pred CCCCchhhhHHHhhcCCccccccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEEC---
Q 002054 135 GAPKERELLVGRIIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRIC--- 211 (974)
Q Consensus 135 g~p~~~eil~~RlidR~lrplfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~--- 211 (974)
|+|+.||++++||++|+|||++|..|.+.++|+|+||++||+.. +||+|||++||+++||||+++|+||++|+++
T Consensus 402 g~~~rREi~~~~Li~raLr~vi~~~~p~tI~V~~~VLesDGs~~--~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~ 479 (630)
T 3u1k_A 402 TGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSSS--MASACGGSLALMDSGVPISSAVAGVAIGLVTKTD 479 (630)
T ss_dssp SSCCHHHHHHHHHHHHHHGGGSCTTCSSEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEC
T ss_pred CCCChHHHHHHHHHHHHHHhhCcccCCeEEEEEEEEEEcCCCHH--HHHHHHHHHHHHhCCCCcccceEEEEEEEecCCC
Confidence 88999999999999999999999999999999999999999877 9999999999999999999999999999997
Q ss_pred ---C-----EEEEcCCHHHHhcCccceeEeeeCCeEEEEEecCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002054 212 ---G-----QFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR--EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGK 281 (974)
Q Consensus 212 ---g-----~~vldPt~~e~~~s~~~l~v~~t~~~i~mie~~~~--~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~ 281 (974)
| .+++||++.|+..+++||.|++|.++++++|++++ .|++++|.+||++|++++++|++.|++.+++...
T Consensus 480 ~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~~~~ 559 (630)
T 3u1k_A 480 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRA 559 (630)
T ss_dssp SSSSCEEEEEEEESCCHHHHHTSSEEEEEEECSSCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred cccccccCceEEecCCHHHHhhCcceEEEEecCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 79999999999999999999999999999998775 6999999999999999999999999999987766
Q ss_pred ccccccc
Q 002054 282 QKKEYKL 288 (974)
Q Consensus 282 ~k~~~~~ 288 (974)
+..++.+
T Consensus 560 ~~~~~ap 566 (630)
T 3u1k_A 560 SRKENGP 566 (630)
T ss_dssp SCCTTCC
T ss_pred hhcccCC
Confidence 5555543
No 54
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-31 Score=294.58 Aligned_cols=202 Identities=18% Similarity=0.178 Sum_probs=160.6
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEeCCC-C----CCCCceeeEeeccccccccCCCCCccccccCCCC-ch
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVTSSKG-D----SVRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPK-ER 140 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~~~~~-~----~~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~-~~ 140 (974)
-|++.+++| +|+|||++++|+|+|||+|+++.. | ++.++++++|+|.+..++. | |.|+|+ ++
T Consensus 33 ~R~i~i~~g----~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~ve~~~~~~~~------~--~~g~~~~~~ 100 (305)
T 2wp8_A 33 FRDVEITFG----KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQ------F--ENGNITGED 100 (305)
T ss_dssp CCCEEEEEC----SSTTEEEEEETTEEEEEEEEEEEC-CCSSCTTCCEEEEEECCC------------------------
T ss_pred cCCeEEEEc----CCCcEEEEEECCeEEEEEEeccccCCcccCCCCcEEEEEEEECCCCCcc------c--cCCCCChhH
Confidence 588999999 799999999999999999998743 2 3578999999997665432 2 459999 99
Q ss_pred hhhHHHhhcCCccc----------cccCCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCC-------------
Q 002054 141 ELLVGRIIDRPIRP----------LFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIP------------- 197 (974)
Q Consensus 141 eil~~RlidR~lrp----------lfp~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP------------- 197 (974)
+++++|+|+|+||| ++|..|.+.++|+|+||++||+.. +||++||++||+++++|
T Consensus 101 ~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~--dAai~aa~~AL~~a~iP~~~~~~~~~~i~~ 178 (305)
T 2wp8_A 101 EVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFI--DASCIAVMAGLMHFKKPDITVHGEQIIVHP 178 (305)
T ss_dssp ------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHCEECCCBCTTSSCCBCC
T ss_pred HHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHH--HHHHHHHHHHHHHhCCCeEEecCCceEecc
Confidence 99999999999995 467888899999999999999866 89999999999999999
Q ss_pred ----------CCCCeEEEEEEEEC--------------CEEEEcCCHHHHhcCccceeEeeeCCe-EEEEEecC-CCCCH
Q 002054 198 ----------WGGPIGMIRIGRIC--------------GQFIVNPTMDELSLSDLNLVYACTREK-TLMIDVQA-REISE 251 (974)
Q Consensus 198 ----------~~~~v~av~vg~i~--------------g~~vldPt~~e~~~s~~~l~v~~t~~~-i~mie~~~-~~~~e 251 (974)
+++.++||++|+++ +.+++|||++|+..++.+|+|+++.++ ++++++.+ ..|++
T Consensus 179 ~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~l~~~g~~~~~~ 258 (305)
T 2wp8_A 179 VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDA 258 (305)
T ss_dssp SSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEECTTSEEEEEEEEEEEEECH
T ss_pred cccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEEcCCCcEEEEEecCCCCCCH
Confidence 55667799999997 899999999999999999999999887 77666544 46999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 002054 252 KDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQ 282 (974)
Q Consensus 252 ~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~ 282 (974)
++|.+||++|++++++|++.|++.+++.++.
T Consensus 259 ~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 289 (305)
T 2wp8_A 259 LTLMKCCHEAYSIIEKITDQILQLLKEDSEK 289 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876543
No 55
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=4.9e-30 Score=299.61 Aligned_cols=202 Identities=21% Similarity=0.302 Sum_probs=176.7
Q ss_pred eEEEEEeCccCcCCCcEEEEEeCCeEEEEEE-EeCCCC-C------CCCceeeEeeccccccccCCCCCccccccCCCCc
Q 002054 68 RLITLETGKIARFANGAVVLGMDETKVLSTV-TSSKGD-S------VRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPKE 139 (974)
Q Consensus 68 r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv-~~~~~~-~------~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~~ 139 (974)
|++.+++|.+ ++|+|||++++|+|+|||+| .+|.++ . +.+..+++++|.-..||++. .+|-|+|+.
T Consensus 325 Rpi~i~~g~l-~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e-----~~~~g~~~~ 398 (549)
T 3gme_A 325 RGLDVRTGVL-PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGE-----TGMVGSPKR 398 (549)
T ss_dssp CCEEEEECCC-SSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTC-----CCCSSCCCS
T ss_pred cceEEEECCC-CCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCC-----cccCCCCCh
Confidence 7899999999 89999999999999999999 477542 1 23456799999988888863 223378999
Q ss_pred hhhhHHHhhcCCcccccc--CCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECC----E
Q 002054 140 RELLVGRIIDRPIRPLFP--AGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRICG----Q 213 (974)
Q Consensus 140 ~eil~~RlidR~lrplfp--~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i~g----~ 213 (974)
||++++|++.|+|||.+| ..|.+.++|+|+||++||+.. +||||||++||+++||||+++|+||++|++++ .
T Consensus 399 Reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~--~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~~~~ 476 (549)
T 3gme_A 399 REIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYV 476 (549)
T ss_dssp SHHHHHHHHHHHHTTTCCCTTTCCCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEECCCCHH--HHHHHHHHHHHHhCCCCcccceeEEEEEEEcCCCceE
Confidence 999999999999999999 467778999999999999988 99999999999999999999999999999965 7
Q ss_pred EEEcCCHHHHhcCccceeEeeeCCeEEEEEecC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002054 214 FIVNPTMDELSLSDLNLVYACTREKTLMIDVQA--REISEKDLEAGLRLAHPEAVKYLEPQIRLAE 277 (974)
Q Consensus 214 ~vldPt~~e~~~s~~~l~v~~t~~~i~mie~~~--~~~~e~~~~~al~~a~~~~~~i~~~~~~~~~ 277 (974)
+++||++.|+..+++||.|++|.++++.+|+++ ..|+.++|.+||++|.+++.+|++.|++.+.
T Consensus 477 iL~D~~~~Ed~~~d~d~~Va~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~ 542 (549)
T 3gme_A 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 (549)
T ss_dssp EEESCCHHHHHHSSEEEEEEECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEecCChHHHccCCceEEEEecCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998888754 3499999999999999999999999988764
No 56
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.96 E-value=2.5e-28 Score=295.81 Aligned_cols=212 Identities=21% Similarity=0.320 Sum_probs=185.9
Q ss_pred CeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEE-eCCCC-C------CCCceeeEeeccccccccCCCCCccccccCCCC
Q 002054 67 SRLITLETGKIARFANGAVVLGMDETKVLSTVT-SSKGD-S------VRDFLPLTVDYQEKQFAQGVIPNTYMRREGAPK 138 (974)
Q Consensus 67 ~r~i~~etg~~a~~A~GSa~v~~G~T~Vl~tv~-~~~~~-~------~~~f~pL~v~y~e~~~a~g~ip~~~~~Reg~p~ 138 (974)
=|++.+++|.+ ++|+|||++++|+|+|||+|+ +|.++ . +.+..+++++|.-..||++. .+|-|+|+
T Consensus 365 lRpI~ie~gvl-~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e-----~~~~g~~~ 438 (757)
T 1e3p_A 365 IRTLAAEVEAI-PRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGE-----TGRVGSPK 438 (757)
T ss_dssp CCCEEEEECCS-SSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTC-----CCCCSSCC
T ss_pred ccceeEEeCCC-CCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCccccc-----ccCCCCCc
Confidence 37899999999 899999999999999999995 77652 2 23446799999999998853 23347899
Q ss_pred chhhhHHHhhcCCcccccc--CCCCCceEEEEEEEeccCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEE----CC
Q 002054 139 ERELLVGRIIDRPIRPLFP--AGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDIPWGGPIGMIRIGRI----CG 212 (974)
Q Consensus 139 ~~eil~~RlidR~lrplfp--~~~~~~~~i~~~vl~~dg~~~~~~~ai~aAs~AL~~s~iP~~~~v~av~vg~i----~g 212 (974)
.+|++++|++.|+|||.+| ..|.+.++|+|+||++||+.. +||+|||++||++++||++++|+||++|++ +|
T Consensus 439 ~reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~--~Asi~aa~lAL~dAgIP~k~~Vaavs~gli~eg~dg 516 (757)
T 1e3p_A 439 RREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTS--MGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEING 516 (757)
T ss_dssp HHHHHHHHHHHHHHGGGCCCTTTSCEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEEESSS
T ss_pred hhHHHHHHHHHHHHHHhccccccCCEEEEEEEEEEECCCCHH--HHHHHHHHHHHHHcCCCcccceEEEEEEEEecCCCC
Confidence 9999999999999999998 367778999999999999987 999999999999999999999999999999 55
Q ss_pred ----EEEEcCCHHHHhcCccceeEeeeCCeEEEEEecCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 002054 213 ----QFIVNPTMDELSLSDLNLVYACTREKTLMIDVQAR--EISEKDLEAGLRLAHPEAVKYLEPQIRLAEKAGKQKKEY 286 (974)
Q Consensus 213 ----~~vldPt~~e~~~s~~~l~v~~t~~~i~mie~~~~--~~~e~~~~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~ 286 (974)
.+++||+..|+..+++||.|+++.++++.+|+.++ .|+.++|.+||++|.+++++|++.|++.+.+. .+...+
T Consensus 517 ~~~~~iLlDp~~~Ed~~gd~d~~Va~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ 595 (757)
T 1e3p_A 517 ETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTP-DEMSPN 595 (757)
T ss_dssp CEEEEEEESCCHHHHHHCSEEEEEEECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC-CCCCTT
T ss_pred ccceeEEeCCCHHHHhccCceEEEEecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccc
Confidence 78999999999999999999999999999998764 48999999999999999999999999988766 433344
Q ss_pred c
Q 002054 287 K 287 (974)
Q Consensus 287 ~ 287 (974)
.
T Consensus 596 a 596 (757)
T 1e3p_A 596 A 596 (757)
T ss_dssp S
T ss_pred C
Confidence 3
No 57
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.93 E-value=3.5e-25 Score=241.42 Aligned_cols=204 Identities=14% Similarity=0.051 Sum_probs=158.0
Q ss_pred ccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEeccCCCcccc
Q 002054 682 EVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPEAD 761 (974)
Q Consensus 682 ~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~~~~~~~~ 761 (974)
.+|++++|+|+++.++|+||++. +.+||||.||++. ++||+|+|+|+. |.++|+.+|++ .||..
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~----------~vGdevev~v~~-d~~~r~iat~~----~p~~~ 68 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQH----------TVGDTVKGFAYT-DMKQKLRLTTL----EVTAT 68 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCC----------CTTSEEEEEEEE-CTTSCEEEECS----CCCSC
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCcc----------ccCCEEEEEEEE-CCCCCEEEecc----ccccc
Confidence 57999999999999999999995 8999999999943 789999999984 88889988865 47888
Q ss_pred cCceEEEEEeecCCcce-eeEEeeccCC-CCCCCCCCCCCCCCCcccCCCCcceEEEeeccccccccccccccccccccc
Q 002054 762 VKGVVEGSVPVNKQATD-VWASVGDVSN-GQNPELPMRKNETPGVNSSTSSTPAVLIRSAAECDEEEKASGFSQSSKSTL 839 (974)
Q Consensus 762 ~g~~~~G~vv~i~~gv~-~~~~~~~l~~-~~~~~lp~~~~~~~~~~~~~G~~v~v~Ir~~l~iD~~~r~i~ls~k~~~~~ 839 (974)
.|....|.|++ ++ .|+.|.+++. .....+|. +.+
T Consensus 69 ~G~~~~g~V~~----v~~~~GaFVdiG~~~~d~lvp~-------sel--------------------------------- 104 (285)
T 3go5_A 69 QDQFGWGRVTE----VRKDLGVFVDTGLPDKEIVVSL-------DIL--------------------------------- 104 (285)
T ss_dssp SSSCEEEEEEE----EETTTEEEEECSCTTCCEEEEG-------GGS---------------------------------
T ss_pred CCCEEEEEEEE----EccCceEEEEECCCCcEEEEEH-------HHC---------------------------------
Confidence 88777777777 55 5666666654 22211111 000
Q ss_pred ccccccccCCCCCCCcEEEEEecccCcCCCcccccCCeEEEEEEEeecCCCCcC-ccccc-ccccc--ccccCCCCCEEE
Q 002054 840 KSTLASKSNSKPKKFTSQSDFFSSTNIQKSTSFSQREREELAECLFGTEDGDED-NKGTR-VEAIV--SAKNLKLGTKVA 915 (974)
Q Consensus 840 ~~~~~~~~~~~~~G~~v~g~V~~~~~~~~~~~~k~Gq~v~~~Vl~vd~e~~~i~-slK~~-~~~p~--~~~~~~vG~vV~ 915 (974)
+|.+ ...+++||++. +++.+|+ ++++. |+|+. ..+|| ...+|++|++|+
T Consensus 105 -----------------------~~~~--~~~~~~Gd~v~-v~l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~ 157 (285)
T 3go5_A 105 -----------------------PELK--ELWPKKGDQLY-IRLEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWP 157 (285)
T ss_dssp -----------------------CSSG--GGSCCTTCEEE-EEEEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEE
T ss_pred -----------------------Cccc--ccccCCCCEEE-EEEEECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEE
Confidence 0100 01246677774 3457776 45665 77765 45677 367899999999
Q ss_pred EEEEEEeCCeEEE-EeCCCeEEEEecccCCCCCCCCCCEEEEEEEEEeC-CCceeeeecC
Q 002054 916 AKVYQVRARGLVL-DLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTG-KGIPVVSLVD 973 (974)
Q Consensus 916 G~V~~I~~~GvFV-~L~~gv~Glih~se~~~~~f~vGd~V~vkVl~id~-~~~~~~~~~~ 973 (974)
|+|+++++||+|| .+++++.||||.||+. ..+++||+|+|+|++||+ +++..+|+..
T Consensus 158 g~V~~i~~~G~fV~~i~~g~~Glih~SEl~-~~l~~Gd~v~~~V~~id~~d~kI~LSlk~ 216 (285)
T 3go5_A 158 AIVYRLKLSGTFVYLPENNMLGFIHPSERY-AEPRLGQVLDARVIGFREVDRTLNLSLKP 216 (285)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEECGGGCS-SCCCTTCEEEEEEEEEETTTTEEEEECSC
T ss_pred EEEEEEeCCcEEEEEeCCCeEEEEEHHHcc-ccCCCCCEEEEEEEEEECCCCeEEEEeCh
Confidence 9999999999999 9999999999999995 679999999999999999 8999999853
No 58
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.62 E-value=9.8e-18 Score=170.85 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=84.3
Q ss_pred cccCcEEEEEEEEEeeceEEEEE--cCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCCC
Q 002054 681 IEVGGIYKGVVTSVKEYGAFVEF--NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPR 757 (974)
Q Consensus 681 ~~~G~i~~G~V~~i~~~G~fV~l--~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~~ 757 (974)
+++|++|.|+|++|++||+||+| .++++||||+|+++++++.++.++|++||.|+|+|+++|. +++|.||+|++.++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 58999999999999999999999 6789999999999999999999999999999999999997 78999999999999
Q ss_pred ccccc------CceEEEEE--------eecCCcceeeEEeeccCCCC
Q 002054 758 PEADV------KGVVEGSV--------PVNKQATDVWASVGDVSNGQ 790 (974)
Q Consensus 758 ~~~~~------g~~~~G~v--------v~i~~gv~~~~~~~~l~~~~ 790 (974)
||... |..+.|.| +.+.+|+++++|.++++|.+
T Consensus 93 p~~~~~~~~~~g~~v~g~v~~i~~~~gv~l~~giegl~h~s~~~~~~ 139 (182)
T 1kl9_A 93 EAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDD 139 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHhccCCCEEEEEEEEchhhcCCcccCChhheEEeeecchhh
Confidence 99762 33333333 45555899999999888764
No 59
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.62 E-value=3.8e-18 Score=173.31 Aligned_cols=134 Identities=11% Similarity=0.124 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-----CCEEEEEecCHHHHHHHH
Q 002054 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-----DGTLTVVAKNRSVMEKVL 670 (974)
Q Consensus 596 ~~~m~~~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-----dg~v~i~~~~~~~~~~a~ 670 (974)
+..|+++++.|+.++++++|++...++++++++++||++|++|. .+|++ +|.+. ..+. ...+.
T Consensus 4 l~~m~~~i~~pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I~--------~~di~~~di~~g~i~--~~d~--~~~~~ 71 (171)
T 1y14_B 4 IKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILC--------VLDYDNIDIQRGRIL--PTDG--SAEFN 71 (171)
T ss_dssp EEEEEEECCCCTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEEE--------ECCGGGCBCC----------------CE
T ss_pred EEEEEEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEE--------EEEecccccCccEEe--CCCC--CEEEE
Confidence 34567788999999999999999999999999999999999982 34444 35555 2222 22222
Q ss_pred HHHHHHhhcccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCcccccc----------ccccccCCEEEEEEEE
Q 002054 671 EKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV----------SDVVSVGQQLSLRCIG 740 (974)
Q Consensus 671 ~~i~~l~~~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~----------~~~~~vGd~V~vkVl~ 740 (974)
..++.+. ..+++|++|+|+|+++++||+||++.+ .+||||+|++++.+.-++ ++.+++||.|+|||++
T Consensus 72 ~~~~~~~-~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (171)
T 1y14_B 72 VKYRAVV-FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (171)
T ss_dssp EEEEEEE-ECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEE
T ss_pred EEEEEEE-ccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEE
Confidence 2333333 468999999999999999999999988 999999999986543222 2679999999999999
Q ss_pred Ecc
Q 002054 741 QDV 743 (974)
Q Consensus 741 id~ 743 (974)
+|.
T Consensus 150 vd~ 152 (171)
T 1y14_B 150 CIS 152 (171)
T ss_dssp EEE
T ss_pred EEc
Confidence 997
No 60
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.59 E-value=1.5e-16 Score=163.97 Aligned_cols=131 Identities=23% Similarity=0.336 Sum_probs=108.0
Q ss_pred eeeeeccchhhhhcCCCccchhhh-hhhh--------Cc---eEEee-CCEEEEEecCHHHHHHHHHHHHHHhhcccccC
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKI-EEET--------GG---RISVS-DGTLTVVAKNRSVMEKVLEKVDFIIGREIEVG 684 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i-~~~~--------g~---~Idi~-dg~v~i~~~~~~~~~~a~~~i~~l~~~~~~~G 684 (974)
.+++|+|++|+++|| ++|+++ .+++ |+ .+|++ +|...|...+...+.. ..++.++ ..+++|
T Consensus 9 ~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~--~~~~~i~-~~~~~G 82 (187)
T 1go3_E 9 DVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHP--VVFETLV-YIPEMY 82 (187)
T ss_dssp EEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEE--EEEEEEE-ECCCTT
T ss_pred EEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEE--EEEEEEE-EccCCC
Confidence 578899999999997 799985 8888 88 57776 6777777766555442 2233333 468999
Q ss_pred cEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCcccc-----------ccccccccCCEEEEEEEEEcc------CCce
Q 002054 685 GIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVS-----------RVSDVVSVGQQLSLRCIGQDV------RGNI 747 (974)
Q Consensus 685 ~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~-----------~~~~~~~vGd~V~vkVl~id~------~gri 747 (974)
++|+|+|+++.+||+||+|.+ .+||+|+|+++++++. ++.+.|++||.|+|+|+++|. .++|
T Consensus 83 ev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~~~~I 161 (187)
T 1go3_E 83 ELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKI 161 (187)
T ss_dssp CEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-----CEE
T ss_pred CEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCCccEE
Confidence 999999999999999999965 9999999999998875 788999999999999999997 3599
Q ss_pred EEEEeccC
Q 002054 748 KLSLKAVS 755 (974)
Q Consensus 748 ~LS~K~~~ 755 (974)
.||+|+..
T Consensus 162 ~lS~k~~~ 169 (187)
T 1go3_E 162 ALTMRQPY 169 (187)
T ss_dssp EEECCSTT
T ss_pred EEEEcCCC
Confidence 99999854
No 61
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.56 E-value=1.3e-17 Score=174.34 Aligned_cols=145 Identities=12% Similarity=0.125 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-----CCEEEEEecCHHHHHHHH
Q 002054 596 LDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-----DGTLTVVAKNRSVMEKVL 670 (974)
Q Consensus 596 ~~~m~~~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-----dg~v~i~~~~~~~~~~a~ 670 (974)
+..|.+++..|+.++++++|++...+|++++++++||++|++|- .+|++ +|.+. ..+. ...+.
T Consensus 4 L~~m~~~I~ipp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI~--------~~dI~~~di~dG~I~--~gdg--~~~~~ 71 (215)
T 2b8k_G 4 IKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILC--------VLDYDNIDIQRGRIL--PTDG--SAEFN 71 (215)
T ss_dssp EECCEEEEEECGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEEE--------ECCSTTCBCCCEEEC--SSSC--CEEEE
T ss_pred eHHHHhhhhcCHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEEE--------EEEeeecccccceEe--CCCH--HHHHH
Confidence 34567788889899999999999999999999999999999983 33333 46555 2121 11122
Q ss_pred HHHHHHhhcccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCcccccc----------ccccccCCEEEEEEEE
Q 002054 671 EKVDFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV----------SDVVSVGQQLSLRCIG 740 (974)
Q Consensus 671 ~~i~~l~~~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~----------~~~~~vGd~V~vkVl~ 740 (974)
..++.+. ..+++|++|+|+|+++++||+||+|.+ .+||||+|+|++.+.-++ ++.+++||.|+|||++
T Consensus 72 v~~~~i~-~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 72 VKYRAVV-FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp EECCEEE-ECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred HHhhhhe-eccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 2233333 468999999999999999999999987 999999999987644222 2679999999999999
Q ss_pred Ecc-CC---ceEEEEeccC
Q 002054 741 QDV-RG---NIKLSLKAVS 755 (974)
Q Consensus 741 id~-~g---ri~LS~K~~~ 755 (974)
+|. .+ ++. |||+..
T Consensus 150 vd~~~~~i~~Ig-Smk~~~ 167 (215)
T 2b8k_G 150 CISQVSSIHAIG-SIKEDY 167 (215)
T ss_dssp EEEETTEEEEEE-ECCSTT
T ss_pred EEcCCCccEEEE-EcCCCC
Confidence 997 32 555 777643
No 62
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=137.25 Aligned_cols=83 Identities=37% Similarity=0.637 Sum_probs=76.9
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcC---CeEEEEecccC-CCccccccccccccCCEEEEEEEEEccCCceEEEEecc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNG---GQQGLLHVSEL-SHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV 754 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~---g~~Glvhisel-s~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~ 754 (974)
..+++|++|.|+|++|.+||+||+|.+ +.+||||+|++ ++.++.++.+.|++||.|+|+|+++|. ++|.||+|++
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~~ 86 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMKDV 86 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEESTTB
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEeec
Confidence 368999999999999999999999985 89999999999 677888999999999999999999997 7999999999
Q ss_pred CCCccccc
Q 002054 755 SPRPEADV 762 (974)
Q Consensus 755 ~~~~~~~~ 762 (974)
.++||...
T Consensus 87 ~~~~~~~~ 94 (103)
T 2eqs_A 87 DQETGEDL 94 (103)
T ss_dssp CTTTCCBC
T ss_pred ccCCchhc
Confidence 99999764
No 63
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.54 E-value=7.2e-15 Score=132.38 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=71.4
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEc--CCeEEEEecc-cCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEecc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFN--GGQQGLLHVS-ELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAV 754 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~--~g~~Glvhis-els~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~ 754 (974)
..+++|++|.|+|+ |++||+||+|. ++.+||+|+| +++++++.++++.+ +||.|+|+|+++|. +|+|.||+|++
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~ 84 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeec
Confidence 35789999999999 99999999996 4899999999 99999999999999 99999999999998 79999999998
Q ss_pred CCC
Q 002054 755 SPR 757 (974)
Q Consensus 755 ~~~ 757 (974)
.++
T Consensus 85 ~~~ 87 (88)
T 1luz_A 85 CRH 87 (88)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 64
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.53 E-value=1.9e-14 Score=136.43 Aligned_cols=84 Identities=33% Similarity=0.519 Sum_probs=78.7
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCc-cccccccccccCCEEEEEEEEEcc-CCceEEEEeccCC
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE-PVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSP 756 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~-~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~ 756 (974)
.++++|++|.|+|+++.+||+||+|.++.+||||+|+++++ +..++.+.|++||.|+|+|+++|. +++|.||+|++.+
T Consensus 26 ~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~~~ 105 (115)
T 2khi_A 26 KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 105 (115)
T ss_dssp CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCCCCS
T ss_pred hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEecCc
Confidence 46899999999999999999999999999999999999984 788899999999999999999998 7999999999999
Q ss_pred Cccccc
Q 002054 757 RPEADV 762 (974)
Q Consensus 757 ~~~~~~ 762 (974)
+||+..
T Consensus 106 ~p~~~~ 111 (115)
T 2khi_A 106 NPWQQF 111 (115)
T ss_dssp SCCCCC
T ss_pred CHHHHH
Confidence 999864
No 65
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.52 E-value=2e-14 Score=156.72 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=108.0
Q ss_pred ccccCcEEEEEEEEEe-eceEEEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEecc-CC
Q 002054 680 EIEVGGIYKGVVTSVK-EYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAV-SP 756 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~-~~G~fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~-~~ 756 (974)
.+++|+++.|+|++++ +||+||++.. +.+||||+||++|.+.. .+++||.+.|+ +.+|+++||.||+|+. ..
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~----~~~~Gd~v~v~-l~iD~~~Ri~ls~k~~~~~ 140 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKEL----WPKKGDQLYIR-LEVDKKDRIWGLLAYQEDF 140 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGG----SCCTTCEEEEE-EEECTTSCEEEEECCHHHH
T ss_pred cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccccc----ccCCCCEEEEE-EEECCCCcEEEEehhhhhc
Confidence 4689999999999999 7999999975 69999999999986533 47899999766 6899989999999864 23
Q ss_pred Ccccc------cCceE---------EEEEe-ecCCcceeeEEeeccCCCCCCCCCCCCCCCCCcccCCCCcceEEEeecc
Q 002054 757 RPEAD------VKGVV---------EGSVP-VNKQATDVWASVGDVSNGQNPELPMRKNETPGVNSSTSSTPAVLIRSAA 820 (974)
Q Consensus 757 ~~~~~------~g~~~---------~G~vv-~i~~gv~~~~~~~~l~~~~~~~lp~~~~~~~~~~~~~G~~v~v~Ir~~l 820 (974)
+||.. .|+.+ +|.|+ .+.+|+.||+|.++++ ..+++||.|+++| +
T Consensus 141 ~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~----------------~~l~~Gd~v~~~V---~ 201 (285)
T 3go5_A 141 QRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY----------------AEPRLGQVLDARV---I 201 (285)
T ss_dssp HHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS----------------SCCCTTCEEEEEE---E
T ss_pred chhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc----------------ccCCCCCEEEEEE---E
Confidence 45543 35444 45566 6556666666666665 3468999999999 9
Q ss_pred ccccccccccccccccccc
Q 002054 821 ECDEEEKASGFSQSSKSTL 839 (974)
Q Consensus 821 ~iD~~~r~i~ls~k~~~~~ 839 (974)
++|++++||+||+++....
T Consensus 202 ~id~~d~kI~LSlk~~~~~ 220 (285)
T 3go5_A 202 GFREVDRTLNLSLKPRSFE 220 (285)
T ss_dssp EEETTTTEEEEECSCCCCC
T ss_pred EEECCCCeEEEEeChhhhh
Confidence 9999999999999976543
No 66
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.51 E-value=1.9e-14 Score=139.25 Aligned_cols=82 Identities=38% Similarity=0.733 Sum_probs=77.9
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCCC
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPR 757 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~~ 757 (974)
.++++|++|.|+|++|++||+||+|.++.+||||+|++++.++.++.+.|++||.|+|+|+++|. +|+|.||+|.+.++
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 46899999999999999999999999999999999999999999999999999999999999998 89999999999888
Q ss_pred ccc
Q 002054 758 PEA 760 (974)
Q Consensus 758 ~~~ 760 (974)
|+.
T Consensus 83 p~~ 85 (130)
T 2k4k_A 83 PEK 85 (130)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 67
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.50 E-value=1.4e-14 Score=146.83 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=76.2
Q ss_pred cccCcEEEEEEEEEeeceEEEEE--cCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCCC
Q 002054 681 IEVGGIYKGVVTSVKEYGAFVEF--NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSPR 757 (974)
Q Consensus 681 ~~~G~i~~G~V~~i~~~G~fV~l--~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~~ 757 (974)
+++|++|.|+|++|++||+||+| +++++||||+|+++++++.++.+.|++||.|+|+|+++|. +|+|.||+|++.++
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 35999999999999999999999 4799999999999999999999999999999999999998 78999999999999
Q ss_pred cccc------cCceEEEEEeec
Q 002054 758 PEAD------VKGVVEGSVPVN 773 (974)
Q Consensus 758 ~~~~------~g~~~~G~vv~i 773 (974)
||.. .|..+.|.|..+
T Consensus 93 ~~~~~~~~~~~g~~v~g~V~~i 114 (175)
T 2a19_A 93 DIIKCEEKYQKSKTVHSILRYC 114 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccCCCcceEEEEEc
Confidence 9985 355666766654
No 68
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=99.50 E-value=1e-13 Score=128.91 Aligned_cols=92 Identities=29% Similarity=0.321 Sum_probs=80.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccchhhhchHHHHHHHHHHHHHHHHHHhcC
Q 002054 289 SMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESLQVLPKAVDTVRKRVIRKRIIAEG 368 (974)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~ 368 (974)
+..+++|.++|++++.++|++|+++..++|++|+++++++++++.++|.++..+.....+..+|++++++.+|++||++|
T Consensus 12 ~~~~~el~~~V~~~~~~~l~~A~~~~~~~K~eR~~al~~ik~~v~~~l~~e~~~~~~~~i~~~~~~lek~~vR~~IL~e~ 91 (104)
T 1whu_A 12 FTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILNEY 91 (104)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHTTTCSSSCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999943469999999999999999999954322223457999999999999999999999
Q ss_pred CcCCCCCCCCcc
Q 002054 369 VRVDGRQLDEVR 380 (974)
Q Consensus 369 ~R~DGR~~~e~R 380 (974)
+|+|||.++|+|
T Consensus 92 ~RiDGR~~deIr 103 (104)
T 1whu_A 92 KRCDGRDSGPSS 103 (104)
T ss_dssp CSCCCCCSSCSC
T ss_pred cCCCCCCccccc
Confidence 999999999998
No 69
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=137.53 Aligned_cols=84 Identities=32% Similarity=0.576 Sum_probs=77.1
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEEEcc---CCceEEEEecc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV---RGNIKLSLKAV 754 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~---~gri~LS~K~~ 754 (974)
..+++|++|.|+|++|.+||+||+|.+ +.+||||+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|++
T Consensus 18 ~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~ 97 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVV 97 (119)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTB
T ss_pred cccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEeec
Confidence 468999999999999999999999954 36999999999999999999999999999999999996 26999999999
Q ss_pred CCCccccc
Q 002054 755 SPRPEADV 762 (974)
Q Consensus 755 ~~~~~~~~ 762 (974)
.++||+..
T Consensus 98 ~~~~~~~~ 105 (119)
T 2cqo_A 98 NQGTGKDL 105 (119)
T ss_dssp CSSSCCBS
T ss_pred ccCCcccc
Confidence 99999763
No 70
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.48 E-value=1.4e-13 Score=121.90 Aligned_cols=73 Identities=27% Similarity=0.559 Sum_probs=67.5
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCC
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSP 756 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~ 756 (974)
++++|++|.|+|+++.+||+||+|.++.+||+|+|++++.++ +.|++||.|+|+|+++|. +|+|.||+|.+.+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 578999999999999999999999989999999999998876 679999999999999998 5999999998764
No 71
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.43 E-value=1.3e-13 Score=129.40 Aligned_cols=78 Identities=35% Similarity=0.461 Sum_probs=73.5
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccC-CceEEEEeccCC
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKLSLKAVSP 756 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~-gri~LS~K~~~~ 756 (974)
.++++|++|.|+|+++.+||+||+|.++.+||||+|++++.++.++.+.|++||.|+|+|+++|.. ++|.||+|.+.+
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTSSSS
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEeecCh
Confidence 578999999999999999999999998999999999999999999999999999999999999984 589999998754
No 72
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.42 E-value=2.9e-15 Score=152.27 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=104.4
Q ss_pred HHHHHHhcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee---CCEEEEEecCHHHHHHHHHHH
Q 002054 597 DHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS---DGTLTVVAKNRSVMEKVLEKV 673 (974)
Q Consensus 597 ~~m~~~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~---dg~v~i~~~~~~~~~~a~~~i 673 (974)
..|++++..|+.++++++|+....++++++++++||++|++| +.++++ +|.+. ..+. ...+...+
T Consensus 5 ~~m~~~I~~~p~~~~~~~~~~i~~~l~~~~~~~vi~~~G~~I--------~~~di~~i~~g~i~--~~d~--~~~~~~~~ 72 (172)
T 2c35_B 5 ISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVI--------AVTTIDNIGAGVIQ--PGRG--FVLYPVKY 72 (172)
T ss_dssp EEEEEEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEE--------EEEEEEEECCCBCC--TTCS--SEEEEEEE
T ss_pred EEEeEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEE--------EEEEeeecCCeEEe--CCCC--CEEEEEEE
Confidence 345667888888999999999999999999999999999988 344443 46544 2221 11111112
Q ss_pred HHHhhcccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCcccccc------------ccccccCCEEEEEEEEE
Q 002054 674 DFIIGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRV------------SDVVSVGQQLSLRCIGQ 741 (974)
Q Consensus 674 ~~l~~~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~------------~~~~~vGd~V~vkVl~i 741 (974)
+.+. ..+++|++|+|+|+++++||+||+|. ..+||||+|++++.+.-++ .+++++||.|+|||+++
T Consensus 73 ~~~~-~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (172)
T 2c35_B 73 KAIV-FRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGT 150 (172)
T ss_dssp EEEE-ECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEE
T ss_pred EEEE-eeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEE
Confidence 2222 35789999999999999999999995 5679999999976533222 45799999999999999
Q ss_pred ccC-C---ceEEEEec
Q 002054 742 DVR-G---NIKLSLKA 753 (974)
Q Consensus 742 d~~-g---ri~LS~K~ 753 (974)
|.. + ++. |||+
T Consensus 151 d~~~~~~~~ig-sm~~ 165 (172)
T 2c35_B 151 RVDKNDIFAIG-SLMD 165 (172)
T ss_dssp EEETTEEEEEE-ECCS
T ss_pred EcCCCCcEEEE-EecC
Confidence 973 3 343 6654
No 73
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.34 E-value=8.5e-13 Score=144.71 Aligned_cols=94 Identities=27% Similarity=0.400 Sum_probs=85.8
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEc--CCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCC
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFN--GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSP 756 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~--~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~ 756 (974)
.+++|++|.|+|++|.+||+||+|. ++++||||+|+++|+++.++.+.|++||.|+|+|+++|+ +++|.||+|.+.+
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~ 89 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP 89 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc
Confidence 4679999999999999999999997 789999999999999999999999999999999999998 7999999999998
Q ss_pred Ccccc------cCceEEEEEeec
Q 002054 757 RPEAD------VKGVVEGSVPVN 773 (974)
Q Consensus 757 ~~~~~------~g~~~~G~vv~i 773 (974)
+||.. .|..+.|.|..+
T Consensus 90 ~p~~~~~~~~~~G~~v~G~V~~v 112 (308)
T 1q8k_A 90 EEAIKCEDKFTKSKTVYSILRHV 112 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHccCCCeeEEEEEEc
Confidence 89976 366677777774
No 74
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.33 E-value=1.3e-12 Score=122.61 Aligned_cols=80 Identities=25% Similarity=0.278 Sum_probs=64.5
Q ss_pred cccccccccc--ccccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC-------CCCCCCCCEEEEEEEEEeCC
Q 002054 894 NKGTRVEAIV--SAKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE-------KKDFVVGDELLVKCSSFTGK 964 (974)
Q Consensus 894 slK~~~~~p~--~~~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~~ 964 (974)
|+|++..+|| ...++++|++|+|+|++|++||+||+|++++.||+|.+++. .+.|++||+|+|+|+++|.+
T Consensus 13 ~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~ 92 (109)
T 2khj_A 13 GLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRK 92 (109)
T ss_dssp --------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETT
T ss_pred chhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECC
Confidence 8999999999 57799999999999999999999999999999999999874 23699999999999999988
Q ss_pred C-ceeeeecC
Q 002054 965 G-IPVVSLVD 973 (974)
Q Consensus 965 ~-~~~~~~~~ 973 (974)
+ ...+|+..
T Consensus 93 ~~ki~LS~k~ 102 (109)
T 2khj_A 93 NRAISLSVRA 102 (109)
T ss_dssp TTEEEEETTS
T ss_pred CCEEEEEEee
Confidence 6 67777653
No 75
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.33 E-value=1.2e-12 Score=141.80 Aligned_cols=93 Identities=27% Similarity=0.461 Sum_probs=82.4
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEc--CCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCC
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFN--GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSP 756 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~--~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~ 756 (974)
.+++|++|.|+|++|.+||+||+|. ++.+||||+|+++++++.++.+.|++||.|.|+|+++|. +|+|.||+|++.+
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 3579999999999999999999997 689999999999999999999999999999999999998 8999999999988
Q ss_pred Ccccc------cCceEEEEEee
Q 002054 757 RPEAD------VKGVVEGSVPV 772 (974)
Q Consensus 757 ~~~~~------~g~~~~G~vv~ 772 (974)
+||.. .|..+.|.+..
T Consensus 88 ~~~~~~~~~~~~g~~v~g~v~~ 109 (275)
T 3aev_A 88 QQRKAKLQEFKRAQKAENLLRL 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhccCCCeEEEEEEE
Confidence 88874 24444454444
No 76
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.33 E-value=4.3e-12 Score=120.18 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=63.5
Q ss_pred ccccccccccc--cccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC--------CCCCCCCEEEEEEEEEeC
Q 002054 894 NKGTRVEAIVS--AKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK--------KDFVVGDELLVKCSSFTG 963 (974)
Q Consensus 894 slK~~~~~p~~--~~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~--------~~f~vGd~V~vkVl~id~ 963 (974)
|+|++..+||. ..++++|+++.|+|++|++||+||+|++++.||+|.|++.. +.|++||+|+|+|+++|.
T Consensus 12 ~~k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~ 91 (115)
T 2khi_A 12 SGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDE 91 (115)
T ss_dssp ---------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEET
T ss_pred chhhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEEC
Confidence 78999999994 57899999999999999999999999999999999998743 369999999999999998
Q ss_pred -CCceeeeecC
Q 002054 964 -KGIPVVSLVD 973 (974)
Q Consensus 964 -~~~~~~~~~~ 973 (974)
++...+|+.+
T Consensus 92 ~~~rI~lslk~ 102 (115)
T 2khi_A 92 ERRRISLGLKQ 102 (115)
T ss_dssp TTTEEEECCCC
T ss_pred CCCEEEEEEEe
Confidence 5788888764
No 77
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.25 E-value=1.7e-12 Score=140.20 Aligned_cols=82 Identities=29% Similarity=0.463 Sum_probs=78.3
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEc--CCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccCC
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFN--GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVSP 756 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~--~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~~ 756 (974)
.+++|++|.|+|++|.+||+||+|. ++.+||||+|+++++++.++.+.|++||.|.|+|+++|. +|++.||+|.+.+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~ 87 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTD 87 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecch
Confidence 5789999999999999999999997 799999999999999999999999999999999999998 8999999999999
Q ss_pred Ccccc
Q 002054 757 RPEAD 761 (974)
Q Consensus 757 ~~~~~ 761 (974)
+||..
T Consensus 88 ~~~~~ 92 (266)
T 3cw2_C 88 DERRK 92 (266)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 99965
No 78
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.24 E-value=2.8e-11 Score=106.95 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC---CCCCCCCEEEEEEEEEeCC-CceeeeecC
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK---KDFVVGDELLVKCSSFTGK-GIPVVSLVD 973 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~-~~~~~~~~~ 973 (974)
++++|++++|+|+++++||+||+|++++.||+|.|++.. +.|++||+|+|+|+++|++ ++..+|+..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 578999999999999999999999999999999999964 3699999999999999997 888998865
No 79
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.16 E-value=1.2e-13 Score=140.22 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=103.6
Q ss_pred HHH-HhcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceE-EeeCCEEEEEecCHHHHHHHHHHHHHH
Q 002054 599 MER-EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRI-SVSDGTLTVVAKNRSVMEKVLEKVDFI 676 (974)
Q Consensus 599 m~~-~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~I-di~dg~v~i~~~~~~~~~~a~~~i~~l 676 (974)
|.+ .+.-|+..+++++|+....+++++.++.++|++|+.|. + +|..| ++.+|.+. . .+....+...++.+
T Consensus 7 l~d~~i~ipp~~~~~~~~~~i~~~l~~~~~g~vi~~~G~~I~-i---~~idi~~i~~G~I~--~--gdg~~~~~v~f~~i 78 (172)
T 3h0g_G 7 ELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIIC-V---LDSNTIDIDKGRVV--P--GQGFAEFEVKYRAV 78 (172)
T ss_dssp EEEEEEECCGGGCTTTHHHHHHHHHHHHHTTCEETTTEEEEE-E---CTTTSEEECCCEEC--T--TTCCEEEEEEEEEE
T ss_pred EecCeEEeCHHHhCccHHHHHHHHHHHHhCCcCcCCccEEEE-E---EeeeeeEeeCCEEE--C--CCCcEEEEEEEEEe
Confidence 444 56677788888889888889999999999999999998 5 32111 23366654 1 11111111112222
Q ss_pred hhcccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccc----------cccccccCCEEEEEEEEEccC--
Q 002054 677 IGREIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSR----------VSDVVSVGQQLSLRCIGQDVR-- 744 (974)
Q Consensus 677 ~~~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~----------~~~~~~vGd~V~vkVl~id~~-- 744 (974)
. ..+.+|++++|+|+++++||+||++. ..+||||+|++++.+.-+ ..+.+++||.|+|||+++|.+
T Consensus 79 v-f~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~ 156 (172)
T 3h0g_G 79 L-WRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDAT 156 (172)
T ss_dssp E-ECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSS
T ss_pred e-eccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCC
Confidence 2 46899999999999999999999996 477999999997664433 356899999999999999973
Q ss_pred --CceEEEEec
Q 002054 745 --GNIKLSLKA 753 (974)
Q Consensus 745 --gri~LS~K~ 753 (974)
.+|. |||+
T Consensus 157 ~~~~Ig-tm~~ 166 (172)
T 3h0g_G 157 EIFAIA-TMKE 166 (172)
T ss_dssp CEEEEE-ECCS
T ss_pred CceEEE-EcCC
Confidence 2455 6654
No 80
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.15 E-value=3.5e-12 Score=130.46 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=66.8
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccc-----------cccccccccCCEEEEEEEEEcc----
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV-----------SRVSDVVSVGQQLSLRCIGQDV---- 743 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v-----------~~~~~~~~vGd~V~vkVl~id~---- 743 (974)
..+.+|++++|+|+++++||+||++. ..+||+|+|+++++++ ++..+.+++||.|+|||+++|.
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred eeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 46899999999999999999999995 5899999999999977 4678889999999999999985
Q ss_pred -CCceEEEEecc
Q 002054 744 -RGNIKLSLKAV 754 (974)
Q Consensus 744 -~gri~LS~K~~ 754 (974)
.++|.||||+.
T Consensus 156 ~~~rI~ls~k~~ 167 (180)
T 4ayb_E 156 RLPRIALTMRQP 167 (180)
T ss_dssp ---CEEEECCST
T ss_pred ccCcEEEEcCCC
Confidence 36899999974
No 81
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=105.92 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=62.6
Q ss_pred cccccccCCCCCEEEEEEEEEeCCeEEEEeCC---CeEEEEecccCC-C-------CCCCCCCEEEEEEEEEeCCCceee
Q 002054 901 AIVSAKNLKLGTKVAAKVYQVRARGLVLDLGG---GIRGMYRFENNE-K-------KDFVVGDELLVKCSSFTGKGIPVV 969 (974)
Q Consensus 901 ~p~~~~~~~vG~vV~G~V~~I~~~GvFV~L~~---gv~Glih~se~~-~-------~~f~vGd~V~vkVl~id~~~~~~~ 969 (974)
.+|...++++|+++.|+|++|++||+||+|++ ++.||+|.|++. . +.|++||+|+|+|+++|. +...+
T Consensus 3 ~~~~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~L 81 (103)
T 2eqs_A 3 SGSSGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSL 81 (103)
T ss_dssp CCCCCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEE
T ss_pred cccccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEE
Confidence 34567789999999999999999999999996 899999999993 1 359999999999999998 57777
Q ss_pred eecC
Q 002054 970 SLVD 973 (974)
Q Consensus 970 ~~~~ 973 (974)
|+.+
T Consensus 82 Slk~ 85 (103)
T 2eqs_A 82 SMKD 85 (103)
T ss_dssp ESTT
T ss_pred EEee
Confidence 7753
No 82
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.08 E-value=3.1e-10 Score=109.71 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=61.1
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC-------CCCCCCCCEEEEEEEEEeC-CCceeeeec
Q 002054 906 KNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE-------KKDFVVGDELLVKCSSFTG-KGIPVVSLV 972 (974)
Q Consensus 906 ~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~-~~~~~~~~~ 972 (974)
.++++|+++.|+|++|++||+||+|++++.||||+|++. .+.|++||+|+|+|+++|. ++...+|+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 578999999999999999999999999999999999885 3569999999999999998 778888875
No 83
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.05 E-value=1.2e-10 Score=110.97 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=63.4
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEc-CCeEEEEecccC-CCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccC
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFN-GGQQGLLHVSEL-SHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVS 755 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~-~g~~Glvhisel-s~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~ 755 (974)
.++++|++|.|+|++|.+||+||+|. ++..||+|.++. ++.++.++.+.|++||.|+|+|+++|. ++++.||+|+..
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 46899999999999999999999997 456665555543 233455788999999999999999998 689999998753
No 84
>3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransfer structural genomics, PSI-2, protein structure initiative; 1.80A {Streptococcus mutans}
Probab=99.03 E-value=4.8e-10 Score=101.99 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=64.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHhhhccchhhh------chHHHHHHHHHHHH
Q 002054 286 YKLSMISEQTLEKVSNLAEAHIEAVFTDPSYSKFERGEALDKIGQDVKKALEEECDEESL------QVLPKAVDTVRKRV 359 (974)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 359 (974)
|.++..+++|.+.|+++++++|++++.+ .+|++|+++++++++++.++|.++.++ .. ..+..+|++++++.
T Consensus 4 ~~~~~~~~el~~~v~~~~~~~l~~a~~~--~~K~eR~~a~~~ik~~v~~~l~e~~~~-~~~~~~~~~~i~~~~~~lek~i 80 (93)
T 3h36_A 4 VELLQVDADLQAEIVGKYNADLQKAVQI--EEKKASEIATEAVKEHVTAEYEERYAE-HEEHDRIMRDVAEILEQMEHAE 80 (93)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHHHHhhCcc-chhhhhhHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999988 499999999999999999999654322 22 57999999999999
Q ss_pred HHHHHHhcCCcCC
Q 002054 360 IRKRIIAEGVRVD 372 (974)
Q Consensus 360 ~r~~il~~~~R~D 372 (974)
+|++||++|+|+|
T Consensus 81 vR~~IL~e~~RiD 93 (93)
T 3h36_A 81 VRRLITEDKVRPD 93 (93)
T ss_dssp HHHHC--------
T ss_pred HHHHHHCCCCCCC
Confidence 9999999999998
No 85
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.1e-10 Score=143.66 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=72.3
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCcc-ccccccccccCCEEEEEEEEEcc-CCceEEEEecc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP-VSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAV 754 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~-v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~ 754 (974)
.++++|++|.|+|++|++||+||+|.+|++||||+|++++++ +.++.++|++||.|+|||+++|. +++|.||+|..
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 578999999999999999999999999999999999999998 89999999999999999999996 79999999864
No 86
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=7.4e-10 Score=105.34 Aligned_cols=76 Identities=18% Similarity=0.064 Sum_probs=63.4
Q ss_pred cccccc--ccccCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEecccCCC-------CCCCCCCEEEEEEEEEeCC---
Q 002054 898 RVEAIV--SAKNLKLGTKVAAKVYQVRARGLVLDLGG-GIRGMYRFENNEK-------KDFVVGDELLVKCSSFTGK--- 964 (974)
Q Consensus 898 ~~~~p~--~~~~~~vG~vV~G~V~~I~~~GvFV~L~~-gv~Glih~se~~~-------~~f~vGd~V~vkVl~id~~--- 964 (974)
+..++| ....+++|+++.|+|++|++||+||+|++ ++.||+|++++.. +.|++||+|+|+|+++|.+
T Consensus 8 ~~~~~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~ 87 (119)
T 2cqo_A 8 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDR 87 (119)
T ss_dssp SCCCCCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSC
T ss_pred ccccchhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccC
Confidence 455566 46688999999999999999999999976 5799999998753 2499999999999999974
Q ss_pred CceeeeecC
Q 002054 965 GIPVVSLVD 973 (974)
Q Consensus 965 ~~~~~~~~~ 973 (974)
+...+|+.+
T Consensus 88 ~~i~LSlk~ 96 (119)
T 2cqo_A 88 IKVSLSMKV 96 (119)
T ss_dssp EEEEEESTT
T ss_pred ceEEEEEee
Confidence 477777753
No 87
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.99 E-value=6.1e-10 Score=100.13 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccccCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEecc-cCC-------CCCCCCCCEEEEEEEEEeC-CCceeeeec
Q 002054 904 SAKNLKLGTKVAAKVYQVRARGLVLDLGG--GIRGMYRFE-NNE-------KKDFVVGDELLVKCSSFTG-KGIPVVSLV 972 (974)
Q Consensus 904 ~~~~~~vG~vV~G~V~~I~~~GvFV~L~~--gv~Glih~s-e~~-------~~~f~vGd~V~vkVl~id~-~~~~~~~~~ 972 (974)
.+...++|++++|+|+ |++||+||+|++ |+.||+|+| +++ .+.| +||+|+|+|+++|. +++.-+|+.
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 3556789999999999 999999999974 899999999 985 2347 99999999999997 567777775
No 88
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=2.8e-10 Score=102.02 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=59.8
Q ss_pred CCCcceeeeeccchhhhhcCCCccchhhhhhhhCce-EEee-C-CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 613 NSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGR-ISVS-D-GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 613 ~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~-Idi~-d-g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.++.+.+++|+|++|+++||+||++|++|+++||++ |+++ | |+|+|++.+.+++++|+++++.+-
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 457899999999999999999999999999999998 9998 4 999999999999999999887553
No 89
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.97 E-value=8e-10 Score=112.66 Aligned_cols=70 Identities=30% Similarity=0.440 Sum_probs=66.3
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcC----------CeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEE
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNG----------GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKL 749 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~----------g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~L 749 (974)
.++ |++|.|+|++|.++|+||+|.+ +.+|+||+||+++.++.++.+.|++||.|+|+|++ +++.|
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~L 129 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRL 129 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEE
Confidence 478 9999999999999999999987 89999999999999999999999999999999998 89999
Q ss_pred EEecc
Q 002054 750 SLKAV 754 (974)
Q Consensus 750 S~K~~ 754 (974)
|+|+.
T Consensus 130 S~k~~ 134 (179)
T 3m7n_A 130 STKEE 134 (179)
T ss_dssp ECCST
T ss_pred EEecC
Confidence 98874
No 90
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.97 E-value=1.5e-09 Score=110.43 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEe--CCCeEEEEecccCC-------CCCCCCCCEEEEEEEEEeC-CCceeeeecC
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDL--GGGIRGMYRFENNE-------KKDFVVGDELLVKCSSFTG-KGIPVVSLVD 973 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L--~~gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~-~~~~~~~~~~ 973 (974)
.++|+++.|+|++|++||+||+| .+|+.||+|+|+++ .+.|++||+|+|+|+++|. ++...+|+.+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~ 88 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 88 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 38999999999999999999999 46899999999884 4579999999999999997 5677788754
No 91
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.96 E-value=2e-09 Score=109.08 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=57.7
Q ss_pred cccCC-CCCEEEEEEEEEeCCeEEEEeC--CCeEEEEecccCC-------CCCCCCCCEEEEEEEEEeC-CCceeeeecC
Q 002054 905 AKNLK-LGTKVAAKVYQVRARGLVLDLG--GGIRGMYRFENNE-------KKDFVVGDELLVKCSSFTG-KGIPVVSLVD 973 (974)
Q Consensus 905 ~~~~~-vG~vV~G~V~~I~~~GvFV~L~--~gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~-~~~~~~~~~~ 973 (974)
...|+ +|+++.|+|++|++||+||+|+ +|+.||+|+|++. .+.|++||+|+|+|+++|. ++...+|+.+
T Consensus 9 ~~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~ 88 (175)
T 2a19_A 9 ENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRR 88 (175)
T ss_dssp SSSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTT
T ss_pred hhcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEe
Confidence 34455 9999999999999999999995 7999999999884 4679999999999999997 5677788754
No 92
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=6.4e-10 Score=103.15 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred hcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC----EEEEEecCHHHHHHHHHHHHHHh
Q 002054 603 ISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG----TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 603 i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg----~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
+...+.++++++|++..+.||+++++.+||+||++|++|+++||++|+++ +| .|.|++.. +.+++|+++|..++
T Consensus 4 ~~~Ak~~i~~~ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~-e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 4 GSSGKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLA-ANLDRAKAGLLERV 82 (104)
T ss_dssp CCCCCCCCCCSSCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCH-HHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999997 66 99999985 89999999998876
No 93
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.94 E-value=2.4e-10 Score=139.37 Aligned_cols=76 Identities=33% Similarity=0.596 Sum_probs=71.8
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEeccC
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVS 755 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~ 755 (974)
++++|++|.|+|++|++||+||+|..+.+||||+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|...
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 5789999999999999999999998899999999999999999999999999999999999998 799999999644
No 94
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.92 E-value=1.2e-09 Score=113.82 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=68.6
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEc--------CCeEEEEecccCCCcccc--ccccccccCCEEEEEEEEEccC-CceE
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFN--------GGQQGLLHVSELSHEPVS--RVSDVVSVGQQLSLRCIGQDVR-GNIK 748 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~--------~g~~Glvhisels~~~v~--~~~~~~~vGd~V~vkVl~id~~-gri~ 748 (974)
.+++|+++.|+|+++.++|+||+|. .+.+|+||+||+++.+.+ ++.+.|++||.|+|+|+++|.. +++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 5799999999999999999999984 467999999999999888 8999999999999999999874 5799
Q ss_pred EEEecc
Q 002054 749 LSLKAV 754 (974)
Q Consensus 749 LS~K~~ 754 (974)
||+|+.
T Consensus 158 LS~k~~ 163 (209)
T 2nn6_I 158 LTTAEN 163 (209)
T ss_dssp EECCSS
T ss_pred EEEecC
Confidence 999874
No 95
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.8e-10 Score=143.68 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCcc-ccccccccccCCEEEEEEEEEcc-CCceEEEEeccC
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEP-VSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKAVS 755 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~-v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~~~ 755 (974)
.++++|++|.|+|++|++||+||+|.+|++||||+|++++.+ +.++.++|++||.|+|||+++|. +++|.||+|...
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 979 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 979 (1030)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHH
Confidence 578999999999999999999999999999999999999998 89999999999999999999996 799999999753
No 96
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.83 E-value=9.5e-09 Score=97.74 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=59.5
Q ss_pred ccccCCCCCEEEEEEEEEeCCeEEEEeC-CCeEEEEecccC--------CCCCCCCCCEEEEEEEEEeCC-CceeeeecC
Q 002054 904 SAKNLKLGTKVAAKVYQVRARGLVLDLG-GGIRGMYRFENN--------EKKDFVVGDELLVKCSSFTGK-GIPVVSLVD 973 (974)
Q Consensus 904 ~~~~~~vG~vV~G~V~~I~~~GvFV~L~-~gv~Glih~se~--------~~~~f~vGd~V~vkVl~id~~-~~~~~~~~~ 973 (974)
..+++++|+++.|+|++|++||+||+|+ +++.|++|.++. +.+.|++||+|+|+|+++|.+ +...+|+..
T Consensus 15 ~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp CTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred cHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEch
Confidence 4678999999999999999999999999 578887777652 357899999999999999975 567777653
No 97
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.80 E-value=1.3e-08 Score=110.19 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=59.5
Q ss_pred cccccCC-CCCEEEEEEEEEeCCeEEEEeC--CCeEEEEecccCC-------CCCCCCCCEEEEEEEEEeC-CCceeeee
Q 002054 903 VSAKNLK-LGTKVAAKVYQVRARGLVLDLG--GGIRGMYRFENNE-------KKDFVVGDELLVKCSSFTG-KGIPVVSL 971 (974)
Q Consensus 903 ~~~~~~~-vG~vV~G~V~~I~~~GvFV~L~--~gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~-~~~~~~~~ 971 (974)
+....+. +|++|.|+|++|++||+||+|+ +|+.||+|.|+++ .+.|++||+|.|+|+++|+ ++...+|+
T Consensus 3 ~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSl 82 (275)
T 3aev_A 3 RKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSL 82 (275)
T ss_dssp ----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred cccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEE
Confidence 3344554 9999999999999999999998 5999999999885 2469999999999999998 67888887
Q ss_pred cC
Q 002054 972 VD 973 (974)
Q Consensus 972 ~~ 973 (974)
.+
T Consensus 83 k~ 84 (275)
T 3aev_A 83 RR 84 (275)
T ss_dssp TT
T ss_pred ee
Confidence 64
No 98
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.78 E-value=4.8e-09 Score=112.26 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=69.5
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccc---cccccccccCCEEEEEEEEEccCCceEEEEec
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV---SRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v---~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~ 753 (974)
.+++|+++.|+|+++.++|+||+|..+.+|+||+|++++.+. .++.+.|++||.|+|+|++++.++++.||+|+
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 479999999999999999999999888999999999998877 88899999999999999999988999999876
No 99
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.73 E-value=1.8e-08 Score=106.55 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=69.0
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCc-cccccccccccCCEEEEEEEEEccCCceEEEEec
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE-PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~-~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~ 753 (974)
.+++|+++.|+|+++.++|+||+|....+|+||+|++++. +..++.+.|++||.|.|+|++++.++++.||+|+
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~ 128 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 4799999999999999999999998789999999999974 6788999999999999999999988999999876
No 100
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.71 E-value=1.1e-08 Score=107.17 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=60.2
Q ss_pred HhcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee--CCEEEEEecC----HHHHHHHHHHHHH
Q 002054 602 EISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS--DGTLTVVAKN----RSVMEKVLEKVDF 675 (974)
Q Consensus 602 ~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~--dg~v~i~~~~----~~~~~~a~~~i~~ 675 (974)
.+..|+.+++++||++..+.||+++++.+||+||++|+.|++++|++|+++ +|.|.+.+.+ .+.+++|+++|..
T Consensus 20 ~~~~pr~e~s~~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~ 99 (219)
T 2e3u_A 20 EIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLA 99 (219)
T ss_dssp -------------CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 455788899999999999999999999999999999999999999999998 7999999887 8999999999998
Q ss_pred Hh
Q 002054 676 II 677 (974)
Q Consensus 676 l~ 677 (974)
+.
T Consensus 100 i~ 101 (219)
T 2e3u_A 100 IG 101 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 101
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.68 E-value=1e-08 Score=95.13 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee---------CCEEEEEecCHHHHHHHHHHHHH
Q 002054 605 APRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS---------DGTLTVVAKNRSVMEKVLEKVDF 675 (974)
Q Consensus 605 ~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~---------dg~v~i~~~~~~~~~~a~~~i~~ 675 (974)
.++.++++++|+...+.||+++++.+||+||++|++|+++||++|+|+ ++.|.|++... .+++|+++|..
T Consensus 4 ~~~~~~s~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-~v~~A~~~I~~ 82 (104)
T 1we8_A 4 GSSGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-EVAAAKHLILE 82 (104)
T ss_dssp CCCCCCSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-HHHHHHHHHHH
T ss_pred CCccccCCCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-HHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999986 35788988765 78999999988
Q ss_pred Hhhccc
Q 002054 676 IIGREI 681 (974)
Q Consensus 676 l~~~~~ 681 (974)
++..+.
T Consensus 83 ~i~e~~ 88 (104)
T 1we8_A 83 KVSEDE 88 (104)
T ss_dssp HHHHHH
T ss_pred HHhhCh
Confidence 774443
No 102
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.68 E-value=1.5e-08 Score=107.63 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=67.9
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCc----cccccccccccCCEEEEEEEEEccCCceEEEEec
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE----PVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKA 753 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~----~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~ 753 (974)
.+++|+++.|+|+++.++|+||+|..+.+|+||+|+++++ +..++.+.|++||.|+|+|++++.++++.||+|+
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEec
Confidence 4799999999999999999999998889999999999873 4577888999999999999999988899999875
No 103
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.66 E-value=5.1e-08 Score=106.93 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeC--CCeEEEEecccCC-------CCCCCCCCEEEEEEEEEeC-CCceeeeecC
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLG--GGIRGMYRFENNE-------KKDFVVGDELLVKCSSFTG-KGIPVVSLVD 973 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~--~gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~-~~~~~~~~~~ 973 (974)
+++|+++.|+|++|++||+||+|+ +|+.||+|.|+++ .+.|++||.|+|+|+++|+ ++..-+|+.+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~ 86 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRR 86 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 459999999999999999999998 6999999999884 4569999999999999998 6777788754
No 104
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.58 E-value=5.4e-08 Score=83.81 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=54.1
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC----EEEEEecCHHHHHHHHHHHHHHh
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG----TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg----~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
...++||+++++.+||+||++|++|+++||++|+++ +| .|.|++. .+.+++|+++|..++
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999997 77 9999998 588999999888663
No 105
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=3.9e-08 Score=89.49 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=55.9
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhh-CceEEee-CC----EEEEEecCHHHHHHHHHHHHHHh
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEET-GGRISVS-DG----TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~-g~~Idi~-dg----~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..+++||+++++.+||+||++||+|+++| |++|+++ +| .|.|.+++. .+++|+++|+.++
T Consensus 18 t~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 18 EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp CEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHH
T ss_pred EEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHH
Confidence 56788999999999999999999999999 9999997 78 999999877 9999999999887
No 106
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.56 E-value=4.2e-08 Score=105.87 Aligned_cols=68 Identities=25% Similarity=0.271 Sum_probs=60.8
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeC--CCeEEEEecccCCC-------CCCCCCCEEEEEEEEEeC-CCceeeeecC
Q 002054 906 KNLKLGTKVAAKVYQVRARGLVLDLG--GGIRGMYRFENNEK-------KDFVVGDELLVKCSSFTG-KGIPVVSLVD 973 (974)
Q Consensus 906 ~~~~vG~vV~G~V~~I~~~GvFV~L~--~gv~Glih~se~~~-------~~f~vGd~V~vkVl~id~-~~~~~~~~~~ 973 (974)
..+++|+++.|+|++|.+||+||+|+ +|+.||+|.|+++. +.|++||+|.|+|+++|+ ++...+|+.+
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 45689999999999999999999997 79999999999853 349999999999999998 7888888764
No 107
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=84.50 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=57.1
Q ss_pred CcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CCE--------EEEEecCHHHHHHHHHHHHHHh
Q 002054 615 PRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGT--------LTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 615 p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg~--------v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
++...+.||+++++.+||+||++|++|+++||++|+++ +|. |.|++ +.+.+++|+++|..++
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDIL 83 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999999999997 676 99998 8899999999998775
No 108
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.4e-07 Score=119.64 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=60.4
Q ss_pred cccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC--------CCCCCCCCEEEEEEEEEe-CCCceeeeec
Q 002054 905 AKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE--------KKDFVVGDELLVKCSSFT-GKGIPVVSLV 972 (974)
Q Consensus 905 ~~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~--------~~~f~vGd~V~vkVl~id-~~~~~~~~~~ 972 (974)
.+++++|++|+|+|++|++||+||+|+.|+.||||+|+++ .+.|++||.|+|+|++|| ..+...+|+.
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk 973 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLL 973 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECC
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEec
Confidence 4899999999999999999999999999999999999875 335899999999999999 4566777765
No 109
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.46 E-value=4.3e-07 Score=100.67 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=75.0
Q ss_pred ccccCCeEEEEEEEeecCCCCcCcccccccccc-------ccccCC--CCCEEEEEEEEEeCCeEEEEeCCCeEEEEecc
Q 002054 871 SFSQREREELAECLFGTEDGDEDNKGTRVEAIV-------SAKNLK--LGTKVAAKVYQVRARGLVLDLGGGIRGMYRFE 941 (974)
Q Consensus 871 ~~k~Gq~v~~~Vl~vd~e~~~i~slK~~~~~p~-------~~~~~~--vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~s 941 (974)
.+++||.++..|...|..+.-+.+.|+....-+ .+.+|+ .|++|+|+|+++.++|+||+++ ++.|++|.+
T Consensus 86 ~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~s 164 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKK 164 (344)
T ss_dssp TCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGG
T ss_pred cccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHH
Confidence 578999999999777765544445555331111 246666 8999999999999999999997 999999999
Q ss_pred cC-CCCCCCCCCEEEEEEEEEeCCC
Q 002054 942 NN-EKKDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 942 e~-~~~~f~vGd~V~vkVl~id~~~ 965 (974)
++ +.+.|++||+|+|.|++++.++
T Consensus 165 E~ip~E~~~vGD~Vkv~V~~V~~~~ 189 (344)
T 1hh2_P 165 EWIPGEEIKAGDLVKVYIIDVVKTT 189 (344)
T ss_dssp GSCTTCCCCTTCEEEEEEEEEEEET
T ss_pred HcCCCcCCCCCCEEEEEEEEEEcCC
Confidence 88 5678999999999999999653
No 110
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.41 E-value=3e-07 Score=83.74 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=56.5
Q ss_pred CcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC-----EEEEEecCHHHHHHHHHHHHHHh
Q 002054 615 PRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG-----TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 615 p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg-----~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
+....+.||+++++.+||+||++|++|+++||++|++. +| .|.|++. .+.+++|+++|..++
T Consensus 16 ~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 16 MVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLE 83 (95)
T ss_dssp CCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 66 8999987 589999999999887
No 111
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.40 E-value=6.6e-07 Score=91.74 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=56.6
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC------------------CCCCCCCCEEEEEEEEEeCC---
Q 002054 906 KNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE------------------KKDFVVGDELLVKCSSFTGK--- 964 (974)
Q Consensus 906 ~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~------------------~~~f~vGd~V~vkVl~id~~--- 964 (974)
....+|+++.|+|+++++||+||+|++ ++||+|.|++. ...|++||+|+|+|+++|.+
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 457899999999999999999999974 99999999763 24589999999999999974
Q ss_pred ---CceeeeecC
Q 002054 965 ---GIPVVSLVD 973 (974)
Q Consensus 965 ---~~~~~~~~~ 973 (974)
+...+|+.+
T Consensus 156 p~~~~I~lS~k~ 167 (187)
T 1go3_E 156 KRGSKIALTMRQ 167 (187)
T ss_dssp ---CEEEEECCS
T ss_pred CCccEEEEEEcC
Confidence 355667654
No 112
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.38 E-value=6.8e-07 Score=90.36 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=52.0
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-----------------CCCCCCCEEEEEEEEEeCCCc
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-----------------KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-----------------~~f~vGd~V~vkVl~id~~~~ 966 (974)
+..+|++++|+|+++++||+||+|++ .+||+|.|+++. +.|++||+|+|+|+++|.+..
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 34699999999999999999999998 999999997741 348899999999999997753
No 113
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.35 E-value=4.4e-07 Score=82.95 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC-------EEEEEecCHHHHHHHHHHHHHHh
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG-------TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg-------~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
....+.||+++++.+||+||++|+.|+++||++|++. +| .|.|++. .+.+++|+.+|..++
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIV 85 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999997 55 8999987 889999999998876
No 114
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.34 E-value=2.6e-07 Score=112.81 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=60.9
Q ss_pred cccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-------CCCCCCCEEEEEEEEEeC-CCceeeeecC
Q 002054 905 AKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-------KDFVVGDELLVKCSSFTG-KGIPVVSLVD 973 (974)
Q Consensus 905 ~~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-------~~f~vGd~V~vkVl~id~-~~~~~~~~~~ 973 (974)
.+++++|+++.|+|++|++||+||+|+.+++||||+|+++. +.|++||.|+|+|++||. ++..-+|+..
T Consensus 649 ~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 649 LKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp STTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred hhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 56799999999999999999999999989999999999853 248999999999999997 5666777754
No 115
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.34 E-value=5.9e-08 Score=121.27 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred cccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC--------CCCCCCCEEEEEEEEEe-CCCceeeeecC
Q 002054 905 AKNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK--------KDFVVGDELLVKCSSFT-GKGIPVVSLVD 973 (974)
Q Consensus 905 ~~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~--------~~f~vGd~V~vkVl~id-~~~~~~~~~~~ 973 (974)
.++|++|++|.|+|++|++||+||+|+.|+.||||+|++.. +.|++||.|+|+|++|| .++...+|+..
T Consensus 900 ~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 900 EKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 47899999999999999999999999999999999998753 34999999999999999 56777777754
No 116
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=4.8e-07 Score=82.25 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=56.3
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-----CCEEEEEecCHHHHHHHHHHHHHHhh
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-----DGTLTVVAKNRSVMEKVLEKVDFIIG 678 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-----dg~v~i~~~~~~~~~~a~~~i~~l~~ 678 (974)
....+.||+++++.+||+||++|++|+++||++|+++ ++.|.|++. .+.+++|+.+|..++.
T Consensus 17 ~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISA 83 (94)
T ss_dssp EEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999996 379999998 8999999999988873
No 117
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.27 E-value=1.1e-06 Score=75.88 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=55.5
Q ss_pred CCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC----EEEEEecCHHHHHHHHHHHHHHh
Q 002054 614 SPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG----TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 614 ~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg----~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.+....+.+|+++++.+||+||++|++|+++||++|+++ +| .+.|++. .+.+++|..+|..++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l 70 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKL 70 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999999997 44 6888887 889999999888765
No 118
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.27 E-value=1e-06 Score=91.92 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=52.0
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-----------------CCCCCCCEEEEEEEEEeCCCc
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-----------------KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-----------------~~f~vGd~V~vkVl~id~~~~ 966 (974)
...+|++++|+|+++++||+||+|+. ++||+|+|+++. +.|++||+|+|+|+++|.+..
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~ 155 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETT
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCC
Confidence 45799999999999999999999987 999999998741 338899999999999997653
No 119
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.26 E-value=2.7e-06 Score=102.99 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=61.9
Q ss_pred ccccCc--EEEEEEEEEeeceEEEEEc-CCeEEEEecccCCC--cccc----------ccccccccCCEEEEEEEEEcc-
Q 002054 680 EIEVGG--IYKGVVTSVKEYGAFVEFN-GGQQGLLHVSELSH--EPVS----------RVSDVVSVGQQLSLRCIGQDV- 743 (974)
Q Consensus 680 ~~~~G~--i~~G~V~~i~~~G~fV~l~-~g~~Glvhisels~--~~v~----------~~~~~~~vGd~V~vkVl~id~- 743 (974)
.-++|+ +++|+|++|++||+||+|. .|.+||||+|++++ +++. +....|++||.|+|+|+++|.
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 457899 9999999999999999994 68999999999974 3311 345679999999999999998
Q ss_pred CCceEEEE
Q 002054 744 RGNIKLSL 751 (974)
Q Consensus 744 ~gri~LS~ 751 (974)
+++|.|++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 78999986
No 120
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.26 E-value=2.7e-06 Score=86.61 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=50.5
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC------------------CCCCCCCCEEEEEEEEEeCC
Q 002054 906 KNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE------------------KKDFVVGDELLVKCSSFTGK 964 (974)
Q Consensus 906 ~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~------------------~~~f~vGd~V~vkVl~id~~ 964 (974)
.+..+|+++.|+|+++++||+||+++ .++||+|.++++ ...|++||+|++||+++|.+
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~ 152 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVAST 152 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-
T ss_pred eeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCC
Confidence 34679999999999999999999997 699999999774 23589999999999999964
No 121
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.24 E-value=1e-06 Score=81.79 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC------EEEEEecCHHHHHHHHHHHHHHhhcccc
Q 002054 613 NSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG------TLTVVAKNRSVMEKVLEKVDFIIGREIE 682 (974)
Q Consensus 613 ~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg------~v~i~~~~~~~~~~a~~~i~~l~~~~~~ 682 (974)
..|++..+.|++++++.|||++|++|++|+++|+++|+|+ ++ .|.|+.. .+.+++|+++|+.++ .+.+
T Consensus 8 ~~~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii-~~~~ 82 (106)
T 2hh3_A 8 RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLL-QSLR 82 (106)
T ss_dssp ----CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHH-HHHC
T ss_pred CCCeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHH-hccc
Confidence 4578899999999999999999999999999999999997 33 6888876 789999999999887 3443
No 122
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.24 E-value=2.3e-06 Score=86.58 Aligned_cols=58 Identities=21% Similarity=0.110 Sum_probs=50.3
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC-------------------CCCCCCCCEEEEEEEEEeCCCc
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE-------------------KKDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~-------------------~~~f~vGd~V~vkVl~id~~~~ 966 (974)
-.+|++++|+|+++++||+||+|+ .+.||+|.|+++ ...|++||+|+|+|+++|.+..
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN 155 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC
Confidence 469999999999999999999996 678999999764 1148899999999999997644
No 123
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.22 E-value=1.7e-06 Score=100.78 Aligned_cols=72 Identities=25% Similarity=0.465 Sum_probs=60.7
Q ss_pred ccccCcEEEEEEEEEeec--eEEEEEcCCeEEEEecccCCCccc---------cccccccccCCEEEEEEEEEcc-CCce
Q 002054 680 EIEVGGIYKGVVTSVKEY--GAFVEFNGGQQGLLHVSELSHEPV---------SRVSDVVSVGQQLSLRCIGQDV-RGNI 747 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~--G~fV~l~~g~~Glvhisels~~~v---------~~~~~~~~vGd~V~vkVl~id~-~gri 747 (974)
...+|.+|.|+|++|.++ ||||+++++.+||||+|++++.++ .++.+.+++||.|.|+|++.+. ++.-
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 467999999999999999 999999999999999999988763 3467889999999999999654 2334
Q ss_pred EEEE
Q 002054 748 KLSL 751 (974)
Q Consensus 748 ~LS~ 751 (974)
.||.
T Consensus 122 ~lTt 125 (517)
T 2bx2_L 122 ALTT 125 (517)
T ss_dssp EEES
T ss_pred eEEe
Confidence 5553
No 124
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.22 E-value=1.7e-06 Score=89.75 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=55.8
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccc-------------------cccccccccCCEEEEEEEE
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV-------------------SRVSDVVSVGQQLSLRCIG 740 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v-------------------~~~~~~~~vGd~V~vkVl~ 740 (974)
.+.+|++++|+|+++++||+||+| +..+|++|++++.+++. ++....+++||.|++||.+
T Consensus 78 ~p~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 578999999999999999999999 57899999999987654 4445679999999999999
Q ss_pred Ecc
Q 002054 741 QDV 743 (974)
Q Consensus 741 id~ 743 (974)
+|.
T Consensus 157 v~~ 159 (203)
T 3ayh_B 157 EDF 159 (203)
T ss_dssp EEE
T ss_pred EEc
Confidence 986
No 125
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=1.1e-06 Score=82.90 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=50.1
Q ss_pred chhhhhcCCCccchhhhhhhhCceEEee-----------------CCEEEEEecCHHHHHHHHHHHHHHhh
Q 002054 625 DTLRRLIGPLGALKRKIEEETGGRISVS-----------------DGTLTVVAKNRSVMEKVLEKVDFIIG 678 (974)
Q Consensus 625 ~ki~~vIg~gGk~i~~i~~~~g~~Idi~-----------------dg~v~i~~~~~~~~~~a~~~i~~l~~ 678 (974)
++|+++|||||++||.|+++||++|+|. +++|.|++.+.+.+++|+++|+.|+.
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4899999999999999999999999994 37999999999999999999998873
No 126
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.18 E-value=4e-06 Score=88.51 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=59.2
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC--------CCCCCCCEEEEEEEEEeCCCceeeeec
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK--------KDFVVGDELLVKCSSFTGKGIPVVSLV 972 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~--------~~f~vGd~V~vkVl~id~~~~~~~~~~ 972 (974)
.++||+|.|+|.+++++|+||+++....|++|.++... +.|++||.|.|+|++++.++.+.+|+.
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r 127 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMK 127 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECC
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEc
Confidence 58999999999999999999999989999999998752 369999999999999999998888864
No 127
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.16 E-value=2e-06 Score=91.24 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=58.6
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-----------CCCCCCCEEEEEEEEEeCCCceeeeec
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-----------KDFVVGDELLVKCSSFTGKGIPVVSLV 972 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-----------~~f~vGd~V~vkVl~id~~~~~~~~~~ 972 (974)
..++||+|.|+|+++.++|+||+++.++.|++|.+++.. +.|++||.|.|+|++++.++.+.+|+.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k 139 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQ 139 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECC
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEe
Confidence 358999999999999999999999999999999997632 279999999999999999887777753
No 128
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.16 E-value=2.3e-06 Score=89.09 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=55.9
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC--------CCeEEEEecccCC---------CCCCCCCCEEEEEEEEEeCCC-cee
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLG--------GGIRGMYRFENNE---------KKDFVVGDELLVKCSSFTGKG-IPV 968 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~--------~gv~Glih~se~~---------~~~f~vGd~V~vkVl~id~~~-~~~ 968 (974)
.+++||+|.|+|.+|+++|+||+|. .++.|++|+++.. .+.|++||.|.|+|++++.++ ...
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 5799999999999999999999974 5789999998663 234999999999999999876 466
Q ss_pred eeec
Q 002054 969 VSLV 972 (974)
Q Consensus 969 ~~~~ 972 (974)
+|..
T Consensus 158 LS~k 161 (209)
T 2nn6_I 158 LTTA 161 (209)
T ss_dssp EECC
T ss_pred EEEe
Confidence 6654
No 129
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.16 E-value=1.9e-06 Score=78.30 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=56.2
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CCE--------EEEEecCHHHHHHHHHHHHHHhhcccc
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DGT--------LTVVAKNRSVMEKVLEKVDFIIGREIE 682 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg~--------v~i~~~~~~~~~~a~~~i~~l~~~~~~ 682 (974)
....+.||+++++.+||++|++|++|+++||++|+++ ++. |.|.. +.+.+++|+++|..++ .+.+
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i-~~~~ 88 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELI-RDQG 88 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHH-CCCS
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHH-hccC
Confidence 4567789999999999999999999999999999997 444 88988 7789999999999887 3444
No 130
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.16 E-value=3.7e-06 Score=85.56 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC----------CeEEEEecccCC-------CCCCCCCCEEEEEEEEEeCCCceeee
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGG----------GIRGMYRFENNE-------KKDFVVGDELLVKCSSFTGKGIPVVS 970 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~----------gv~Glih~se~~-------~~~f~vGd~V~vkVl~id~~~~~~~~ 970 (974)
.+ ||+|.|+|++|+++|+||+|.. ++.|++|+|++. .+.|++||.|.|+|++ +...+|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~LS 130 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRLS 130 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEEE
Confidence 36 9999999999999999999987 899999999874 3469999999999998 666666
Q ss_pred ec
Q 002054 971 LV 972 (974)
Q Consensus 971 ~~ 972 (974)
..
T Consensus 131 ~k 132 (179)
T 3m7n_A 131 TK 132 (179)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 131
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.15 E-value=2.3e-06 Score=85.54 Aligned_cols=94 Identities=13% Similarity=0.265 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCcc---eeeeeccchhhhhcCCCccchhhhhhhhCceEEee-------CCEEEE
Q 002054 589 HKGRLQILDHMEREISAPRTQDDRNSPRL---ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-------DGTLTV 658 (974)
Q Consensus 589 ~~~~~~I~~~m~~~i~~~~~~~~~~~p~~---~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-------dg~v~i 658 (974)
..+...|.+.|.+....+......+.|+. ..+.+|+++++.+||+||++|++|+++||++|.+. ++.+.|
T Consensus 61 ~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I 140 (164)
T 2jvz_A 61 QQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHI 140 (164)
T ss_dssp HHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEE
Confidence 33444555555544333333444555543 67889999999999999999999999999999986 357888
Q ss_pred EecCHHHHHHHHHHHHHHhhcccccC
Q 002054 659 VAKNRSVMEKVLEKVDFIIGREIEVG 684 (974)
Q Consensus 659 ~~~~~~~~~~a~~~i~~l~~~~~~~G 684 (974)
++. .+..+.|+..+..++ .+++.|
T Consensus 141 ~G~-~~~v~~A~~~I~~~i-~~~~~g 164 (164)
T 2jvz_A 141 MGP-PDRCEHAARIINDLL-QSLRSG 164 (164)
T ss_dssp ESC-HHHHHHHHHHHHHHH-HHHHCC
T ss_pred EcC-HHHHHHHHHHHHHHH-hhhhCC
Confidence 876 789999999998887 566654
No 132
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.14 E-value=2.5e-06 Score=82.13 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=55.1
Q ss_pred ceeeeeccc------hhhhhcCCCccchhhhhhhhCceEEee-----------------------CCEEEEEecCHHHHH
Q 002054 617 LATLKYDND------TLRRLIGPLGALKRKIEEETGGRISVS-----------------------DGTLTVVAKNRSVME 667 (974)
Q Consensus 617 ~~~~~i~~~------ki~~vIg~gGk~i~~i~~~~g~~Idi~-----------------------dg~v~i~~~~~~~~~ 667 (974)
...+.||++ +|+.+|||+|++||.|+++||++|+|. ++.|.|++.+.+.++
T Consensus 8 ~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~ 87 (131)
T 1k1g_A 8 SDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVK 87 (131)
T ss_dssp EEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHH
T ss_pred EEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHH
Confidence 356677776 899999999999999999999999983 458999999999999
Q ss_pred HHHHHHHHHhh
Q 002054 668 KVLEKVDFIIG 678 (974)
Q Consensus 668 ~a~~~i~~l~~ 678 (974)
+|+++|+.++.
T Consensus 88 ~A~~~I~~ll~ 98 (131)
T 1k1g_A 88 KAVEQIRNILK 98 (131)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999873
No 133
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.11 E-value=3.6e-06 Score=93.37 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=58.0
Q ss_pred ccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc--C-CceEEEEec
Q 002054 682 EVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV--R-GNIKLSLKA 753 (974)
Q Consensus 682 ~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~--~-gri~LS~K~ 753 (974)
+.|++++|+|.++.++|+||+++ +.+|+||.+|++ |.+.|++||.|+|.|++++. + +++.||++.
T Consensus 133 ~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~ 200 (344)
T 1hh2_P 133 LKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRV 200 (344)
T ss_dssp CTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSS
T ss_pred cCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeec
Confidence 38999999999999999999995 899999999996 45789999999999999986 2 478899874
No 134
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.10 E-value=3.2e-06 Score=73.58 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=54.8
Q ss_pred CcceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC-------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 615 PRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 615 p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d-------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.....+.||+++++.+||+||++|++|++++|++|++++ +.|.|++. .+..++|+.+|..++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRL 72 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999863 67889886 889999999998776
No 135
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.9e-06 Score=87.87 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=55.7
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccc--------------cccccccccCCEEEEEEEEEcc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV--------------SRVSDVVSVGQQLSLRCIGQDV 743 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v--------------~~~~~~~~vGd~V~vkVl~id~ 743 (974)
..+.+|++++|+|+++++||+||+|.+..+|++|++++.++++ ++....+++||.|+|||.++|.
T Consensus 77 f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred ecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 3578999999999999999999999666899999999977653 3345669999999999999986
No 136
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.09 E-value=5.5e-06 Score=88.59 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=57.9
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC----------CCCCCCCCEEEEEEEEEeCCCceeeeec
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE----------KKDFVVGDELLVKCSSFTGKGIPVVSLV 972 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~----------~~~f~vGd~V~vkVl~id~~~~~~~~~~ 972 (974)
.++||+|.|+|.++.++|+||+|++.+.|++|.+++. .+.|++||.|.|+|++++.++.+.+|+.
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r 146 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVK 146 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECC
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEc
Confidence 4899999999999999999999999999999999653 2369999999999999999888777754
No 137
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.06 E-value=7e-06 Score=74.21 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=56.1
Q ss_pred CCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC-------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 614 SPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 614 ~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d-------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.+....+.|++++++.+||++|++|++|+++||++|++++ +.|.|+.. .+.+++|+.+|+.++
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIV 82 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999973 37889886 789999999998877
No 138
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.05 E-value=9e-06 Score=82.07 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=74.1
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEeccCCCc
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRP 758 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~~~~~ 758 (974)
.+++|+++.|+|+++..++++|+|.+ ..+|++|++++. ...++....|++||.|.++|..++.++.+.||+.+.....
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~~~~~r 82 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGR 82 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCTTTCS
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecCCCceEEEeccccccc
Confidence 47899999999999999999999988 799999999986 3456778889999999999999988889999954321111
Q ss_pred ccccCceEEEEEeec
Q 002054 759 EADVKGVVEGSVPVN 773 (974)
Q Consensus 759 ~~~~g~~~~G~vv~i 773 (974)
....|....|.++++
T Consensus 83 ~~~lG~L~~G~l~~v 97 (175)
T 2ja9_A 83 DAGFGILEDGMIIDV 97 (175)
T ss_dssp CTTCEEECSCEEEEC
T ss_pred ccCCcCcCCCEEEEE
Confidence 123455566777765
No 139
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.6e-06 Score=103.28 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=60.0
Q ss_pred CcEEEEEEEEEeeceEEEEEcC-CeEEEEecccCC--Cccc-----------cc----cccccccCCEEEEEEEEEcc--
Q 002054 684 GGIYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELS--HEPV-----------SR----VSDVVSVGQQLSLRCIGQDV-- 743 (974)
Q Consensus 684 G~i~~G~V~~i~~~G~fV~l~~-g~~Glvhisels--~~~v-----------~~----~~~~~~vGd~V~vkVl~id~-- 743 (974)
|++++|+|++|.+||+||.|.+ |++|+||+|+++ ++++ ++ ....|++||.|+|+|..+|.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 9999999999999999999987 899999999997 4431 12 35789999999999999986
Q ss_pred --CCceEEEEe
Q 002054 744 --RGNIKLSLK 752 (974)
Q Consensus 744 --~gri~LS~K 752 (974)
++||.||+|
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 279999987
No 140
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.03 E-value=3e-06 Score=92.91 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=70.4
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCc----cc------cccccccccCCEEEEEEEEEccCCceEE
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHE----PV------SRVSDVVSVGQQLSLRCIGQDVRGNIKL 749 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~----~v------~~~~~~~~vGd~V~vkVl~id~~gri~L 749 (974)
.+++|+++.|+|+++.++|+||+|....+|++|+|+++.. +. .++.+.|++||.|.|||++++.++++.|
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~L 171 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSL 171 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEE
Confidence 4799999999999999999999997678999999999753 22 2345789999999999999998889999
Q ss_pred EEeccCCCcccccCceEEEEEeec
Q 002054 750 SLKAVSPRPEADVKGVVEGSVPVN 773 (974)
Q Consensus 750 S~K~~~~~~~~~~g~~~~G~vv~i 773 (974)
|+|+ ...|....|++..+
T Consensus 172 Str~------~~LGkL~~G~v~~v 189 (308)
T 2nn6_H 172 HTRS------LKYGKLGQGVLVQV 189 (308)
T ss_dssp ECCS------STTCEECSSCEEEC
T ss_pred EecC------cCCcccCCeEEEEE
Confidence 9885 23455555666653
No 141
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.00 E-value=3.2e-06 Score=85.51 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=52.1
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-----------------CCCCCCCEEEEEEEEEeCCCc
Q 002054 906 KNLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-----------------KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 906 ~~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-----------------~~f~vGd~V~vkVl~id~~~~ 966 (974)
-.-.+|++++|+|+++++||+||+|+ .++||+|.|+++. ..|++||+|++||+++|.+..
T Consensus 80 f~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~ 156 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDAT 156 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSS
T ss_pred eccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCC
Confidence 34579999999999999999999997 5789999998741 358999999999999998763
No 142
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.00 E-value=2.2e-05 Score=72.22 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred cccCcEEEEEEEEE---eeceEEEEEc-CCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEeccCC
Q 002054 681 IEVGGIYKGVVTSV---KEYGAFVEFN-GGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSP 756 (974)
Q Consensus 681 ~~~G~i~~G~V~~i---~~~G~fV~l~-~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~~~ 756 (974)
.+.++.++|+|+.. +.|| |+.-. ++.+.|+|+|++.+..+ +...+++||.|+..|..++
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~--~~~~l~~Ge~V~g~V~~i~-------------- 73 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA--VRGNPQQGDRVEGKIKSIT-------------- 73 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC--CCCCCCTTCEEEEEEEECC--------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc--cccCCCCCCEEEEEEEEeC--------------
Confidence 45678899999988 6689 77764 45899999999998754 1234789999999887753
Q ss_pred CcccccCceEEEEEeecCCcceeeEEeeccCCCC
Q 002054 757 RPEADVKGVVEGSVPVNKQATDVWASVGDVSNGQ 790 (974)
Q Consensus 757 ~~~~~~g~~~~G~vv~i~~gv~~~~~~~~l~~~~ 790 (974)
.+|.|+++..++++++|+++++|.+
T Consensus 74 ---------~fG~fv~l~~~~eGlvhis~i~~~~ 98 (101)
T 2bh8_A 74 ---------DFGIFIGLDGGIDGLVHLSDISWAQ 98 (101)
T ss_dssp ---------SEEEEECTTSCEEEEEEEEEEEECC
T ss_pred ---------CcEEEEEcCCCceEEEEHHHCccCc
Confidence 3899999988999999999999875
No 143
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=97.99 E-value=9.9e-06 Score=71.57 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=54.1
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC-------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d-------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
....+.||+++++.+||+||++|++|+++||++|++++ +.|.|+. +.+.+++|+.+|+.++
T Consensus 7 ~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-TQDQIQNAQYLLQNSV 74 (82)
T ss_dssp EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999873 3788888 5889999999998776
No 144
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.99 E-value=1.1e-05 Score=80.49 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCCCCCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC--------EE
Q 002054 587 HAHKGRLQILDHMERE-ISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG--------TL 656 (974)
Q Consensus 587 ~A~~~~~~I~~~m~~~-i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg--------~v 656 (974)
++..+...|++.|.+. ...|+. ..+....+.||+++++.+||+||++|++|+++||++|++. ++ .|
T Consensus 59 ~v~~A~~~I~~~~~e~~~~~~~~----~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v 134 (163)
T 3krm_A 59 AQFKAQGRIYGKLKEENFFGPKE----EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIV 134 (163)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSSC----CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEE
T ss_pred HHHHHHHHHHHHHhccccccccc----CCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEE
Confidence 4455666777777765 333322 2233457889999999999999999999999999999997 44 78
Q ss_pred EEEecCHHHHHHHHHHHHHHh
Q 002054 657 TVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 657 ~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.|++ +.+..+.|+.+|..++
T Consensus 135 ~I~G-~~~~v~~A~~~I~~~i 154 (163)
T 3krm_A 135 KIIG-HFYASQMAQRKIRDIL 154 (163)
T ss_dssp EEEE-CHHHHHHHHHHHHHHH
T ss_pred EEEe-CHHHHHHHHHHHHHHH
Confidence 9998 6789999999998887
No 145
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.98 E-value=1.8e-05 Score=78.80 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCC--CCCCCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee--------CCEEEE
Q 002054 589 HKGRLQILDHMEREISAPRTQ--DDRNSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS--------DGTLTV 658 (974)
Q Consensus 589 ~~~~~~I~~~m~~~i~~~~~~--~~~~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~--------dg~v~i 658 (974)
.++...|++.|.+.+..++.. ..+++|....+.||+++++.+||+||++|++|++++|++|+++ ++.|.|
T Consensus 60 ~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I 139 (160)
T 2jzx_A 60 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 139 (160)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEE
Confidence 445556777777776654321 2356688889999999999999999999999999999999886 367889
Q ss_pred EecCHHHHHHHHHHHHHHh
Q 002054 659 VAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 659 ~~~~~~~~~~a~~~i~~l~ 677 (974)
++ +.+.+++|+..+..++
T Consensus 140 ~G-~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 140 AG-IPQSIIECVKQICVVM 157 (160)
T ss_dssp EE-CHHHHHHHHHHHHHHH
T ss_pred Ec-CHHHHHHHHHHHHHHH
Confidence 88 7889999998887765
No 146
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.98 E-value=8.2e-06 Score=72.09 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=54.5
Q ss_pred CcceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC-------CEEEEEecCHHHHHHHHHHHHHHhh
Q 002054 615 PRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-------GTLTVVAKNRSVMEKVLEKVDFIIG 678 (974)
Q Consensus 615 p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d-------g~v~i~~~~~~~~~~a~~~i~~l~~ 678 (974)
+....+.||+++++.+||+||++|++|++++|++|++++ +.|.|++.. +.+++|+.+|..++.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA-ASISLAQYLINARLS 74 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-HHHHHHHHHHHHHTC
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999863 378888765 899999999988763
No 147
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=97.97 E-value=7.4e-06 Score=71.18 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=52.2
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCceEEee-C---------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D---------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-d---------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..+.||+++++.+||+||++|++|++++|++|+++ + +.|.|++. .+..+.|+..|..++
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHC
T ss_pred EEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999997 3 47888886 789999999888765
No 148
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.97 E-value=9.8e-06 Score=99.81 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=52.4
Q ss_pred cEEEEEEEEEeeceEEEEEcC-CeEEEEecccCC--Cccc-----------cc----cccccccCCEEEEEEEEEccC--
Q 002054 685 GIYKGVVTSVKEYGAFVEFNG-GQQGLLHVSELS--HEPV-----------SR----VSDVVSVGQQLSLRCIGQDVR-- 744 (974)
Q Consensus 685 ~i~~G~V~~i~~~G~fV~l~~-g~~Glvhisels--~~~v-----------~~----~~~~~~vGd~V~vkVl~id~~-- 744 (974)
++++|+|++|.+||+||.|.+ |++||||+|+++ ++++ .+ ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 799999999999999999987 899999999996 4431 12 257899999999999999874
Q ss_pred --CceEEEEe
Q 002054 745 --GNIKLSLK 752 (974)
Q Consensus 745 --gri~LS~K 752 (974)
+||.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 89999986
No 149
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.94 E-value=9.4e-06 Score=75.49 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-C---------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D---------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-d---------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
...+.|+.++++.|||++|++|++|+++||++|+++ + +.|.|+. +.+.+++|+.+|+.++
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i 77 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKI 77 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999986 3 4688887 8899999999999877
No 150
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.91 E-value=9.1e-06 Score=72.99 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=54.3
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC-------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d-------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
....+.||+++++.+||++|++|++|+++||++|++++ +.|.|+.. .+.+++|+.+|+.++
T Consensus 14 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999863 67888887 789999999998776
No 151
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.88 E-value=4.9e-06 Score=76.57 Aligned_cols=43 Identities=28% Similarity=0.651 Sum_probs=40.3
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV 721 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v 721 (974)
..+++|++|+++|+++.+||+||+|.++++||||+|+++|.++
T Consensus 57 ~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred cCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 4689999999999999999999999889999999999998765
No 152
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.84 E-value=1.7e-05 Score=70.86 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=52.6
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCceEEee-C---------CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D---------GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-d---------g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..+.||+++++.+||+||++|++|++++|++|+++ + +.|.|++. .+.++.|+.+|..++
T Consensus 5 ~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i 73 (87)
T 1ec6_A 5 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRV 73 (87)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred EEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999997 3 37888886 789999999998776
No 153
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.73 E-value=5.2e-05 Score=84.30 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=52.7
Q ss_pred cccCC--CCCEEEEEEEE----EeCCeEEEEeCC---CeEEEEecccC-CCCCCCCCCEEEEEEEEEeCCC
Q 002054 905 AKNLK--LGTKVAAKVYQ----VRARGLVLDLGG---GIRGMYRFENN-EKKDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 905 ~~~~~--vG~vV~G~V~~----I~~~GvFV~L~~---gv~Glih~se~-~~~~f~vGd~V~vkVl~id~~~ 965 (974)
+.+|+ +|++|+|+|.+ +.+.++||+|+. ++.|++|.+++ |.+.|++||+|+|.|++|+.+.
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~V~~~~ 193 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGA 193 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCS
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEEEecCC
Confidence 55666 99999999999 999999999986 59999999977 6788999999999999999863
No 154
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=3.2e-05 Score=68.44 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=51.1
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEee---CC-EEEEEecCHHHHHHHHHHHHHHh
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS---DG-TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~---dg-~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
....+.||.++++.+||+||++||+|+++||++|.+. ++ .+.++.. .+..++|+++|..+.
T Consensus 10 ~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 10 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHI 74 (83)
T ss_dssp EEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHH
T ss_pred eEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999986 33 5666654 589999999998765
No 155
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.59 E-value=7.9e-05 Score=90.20 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=56.6
Q ss_pred cCCCCC--EEEEEEEEEeCCeEEEEeC-CCeEEEEecccCCC-------------------CCCCCCCEEEEEEEEEeCC
Q 002054 907 NLKLGT--KVAAKVYQVRARGLVLDLG-GGIRGMYRFENNEK-------------------KDFVVGDELLVKCSSFTGK 964 (974)
Q Consensus 907 ~~~vG~--vV~G~V~~I~~~GvFV~L~-~gv~Glih~se~~~-------------------~~f~vGd~V~vkVl~id~~ 964 (974)
.-++|+ +++|+|.+|++||+||+|+ .|+.||||.|++.. ..|++||+|+|+|+++|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 347899 9999999999999999995 59999999987741 2489999999999999985
Q ss_pred -Cceeeeec
Q 002054 965 -GIPVVSLV 972 (974)
Q Consensus 965 -~~~~~~~~ 972 (974)
+...++|+
T Consensus 635 ~~~I~~~l~ 643 (644)
T 2id0_A 635 TRSIIARPV 643 (644)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEEEc
Confidence 66777776
No 156
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.57 E-value=6.6e-05 Score=83.46 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=57.0
Q ss_pred ccCcEEEEEEEE----EeeceEEEEEcC---CeEEEEecccCCCccccccccccccCCEEEEEEEEEccC---CceEEEE
Q 002054 682 EVGGIYKGVVTS----VKEYGAFVEFNG---GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR---GNIKLSL 751 (974)
Q Consensus 682 ~~G~i~~G~V~~----i~~~G~fV~l~~---g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~---gri~LS~ 751 (974)
++|++++|+|.+ +.++++||+|+. +.+|+||.+|+.. .+.|++||.|+|.|++++.. .+|.||+
T Consensus 129 r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP------~E~~~~GDrVkvyV~~V~~~~kgpqI~LSR 202 (366)
T 1k0r_A 129 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP------GESYEHGNRLRCYVVGVTRGAREPLITLSR 202 (366)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT------TCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC------CccCCCCCEEEEEEEEEecCCCccEEEEEe
Confidence 499999999999 999999999965 4999999999863 57899999999999999873 3677876
Q ss_pred ec
Q 002054 752 KA 753 (974)
Q Consensus 752 K~ 753 (974)
..
T Consensus 203 T~ 204 (366)
T 1k0r_A 203 TH 204 (366)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 157
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00015 Score=75.76 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=50.8
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC---------------------CCCCCCCCEEEEEEEEEeCCC
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE---------------------KKDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~---------------------~~~f~vGd~V~vkVl~id~~~ 965 (974)
.-.+|+++.|+|.++++||+||+|++-++|++|.+++. ...|+.||+|++||.++|-..
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~ 157 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVD 157 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECC
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEccc
Confidence 34699999999999999999999976789999999662 113889999999999999654
No 158
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.46 E-value=0.00031 Score=70.88 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=59.5
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEecccCC------CCCCCCCCEEEEEEEEEeCCCceeeeecC
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGG-GIRGMYRFENNE------KKDFVVGDELLVKCSSFTGKGIPVVSLVD 973 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~-gv~Glih~se~~------~~~f~vGd~V~vkVl~id~~~~~~~~~~~ 973 (974)
.++||+|-|+|..+..++.+|+++. ...|++|.+.++ ...|++||-|.|+|.+++.++.+-++.+|
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~ 77 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFD 77 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSC
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCCCceEEEecc
Confidence 3689999999999999999999998 799999999764 34699999999999999999988888666
No 159
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.44 E-value=0.00021 Score=74.06 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC----------------------C----CCCCCCEEEEEEEEE
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK----------------------K----DFVVGDELLVKCSSF 961 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~----------------------~----~f~vGd~V~vkVl~i 961 (974)
-.+|+++.|+|.+++++|+||+| +.++|++|.+++.. + .|+.||+|++||.++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 47999999999999999999999 48999999996521 2 389999999999999
Q ss_pred eCC
Q 002054 962 TGK 964 (974)
Q Consensus 962 d~~ 964 (974)
|-.
T Consensus 158 ~~~ 160 (203)
T 3ayh_B 158 DFV 160 (203)
T ss_dssp EEC
T ss_pred Ecc
Confidence 963
No 160
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.39 E-value=0.00017 Score=71.67 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=55.7
Q ss_pred CCCcceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC----EEEEEecCHHHHHHHHHHHHHHh
Q 002054 613 NSPRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG----TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 613 ~~p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg----~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
+.|....+.||+++++.+||+||++|++|++++|++|+++ ++ .+.|++. .+.+++|+..+..++
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i 70 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKL 70 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999997 33 7888876 678888888877655
No 161
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.37 E-value=0.00034 Score=73.80 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=52.0
Q ss_pred CCCCEEEEEEEE----EeCCeEEEEeCC---CeEEEEecccC-CCCCCCCCCEEEEEEEEEeCCC
Q 002054 909 KLGTKVAAKVYQ----VRARGLVLDLGG---GIRGMYRFENN-EKKDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 909 ~vG~vV~G~V~~----I~~~GvFV~L~~---gv~Glih~se~-~~~~f~vGd~V~vkVl~id~~~ 965 (974)
++|++|+|+|.+ +.+..+||+|+. +..|++|.+++ +.+.|++||+|+|.|++|+...
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~~V~~~~ 70 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGA 70 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCS
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEEEEEcCC
Confidence 589999999999 888899999986 59999999977 6788999999999999999763
No 162
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.29 E-value=0.00028 Score=74.41 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=58.5
Q ss_pred cccCcEEEEEEEE----EeeceEEEEEcC---CeEEEEecccCCCccccccccccccCCEEEEEEEEEccC---CceEEE
Q 002054 681 IEVGGIYKGVVTS----VKEYGAFVEFNG---GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR---GNIKLS 750 (974)
Q Consensus 681 ~~~G~i~~G~V~~----i~~~G~fV~l~~---g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~---gri~LS 750 (974)
-+.|++++|+|.+ +.+..+||+|.. +.+|+||.+|+. |.+.|++||.|+|.|++++.. ++|.||
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 3689999999999 888999999965 499999999986 457899999999999999862 589999
Q ss_pred Eec
Q 002054 751 LKA 753 (974)
Q Consensus 751 ~K~ 753 (974)
+..
T Consensus 79 Rt~ 81 (251)
T 2asb_A 79 RTH 81 (251)
T ss_dssp SSC
T ss_pred ecc
Confidence 865
No 163
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.25 E-value=0.00058 Score=68.79 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=51.5
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC----------CEEEEEecCHHHHHHHHHHHHHH
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD----------GTLTVVAKNRSVMEKVLEKVDFI 676 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d----------g~v~i~~~~~~~~~~a~~~i~~l 676 (974)
...+.|++++++.+||++|++|++|++++|++|++++ +.|.|.. +.+.+++|+..|..+
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999999862 5688887 778999999888754
No 164
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.21 E-value=0.00034 Score=67.67 Aligned_cols=53 Identities=25% Similarity=0.554 Sum_probs=46.6
Q ss_pred chhhhhcCCCccchhhhhhhhCceEEee-CC------------------------EEEEEecCHH-----HHHHHHHHHH
Q 002054 625 DTLRRLIGPLGALKRKIEEETGGRISVS-DG------------------------TLTVVAKNRS-----VMEKVLEKVD 674 (974)
Q Consensus 625 ~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg------------------------~v~i~~~~~~-----~~~~a~~~i~ 674 (974)
+.++.+|||+|.++|.|+++||++|.|. .| .|.|++.+.+ .+++|.+.|+
T Consensus 17 NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~ 96 (140)
T 2bl5_A 17 NFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVK 96 (140)
T ss_dssp CHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHH
Confidence 4699999999999999999999999987 55 7889997764 7889999998
Q ss_pred HHh
Q 002054 675 FII 677 (974)
Q Consensus 675 ~l~ 677 (974)
.++
T Consensus 97 ~lL 99 (140)
T 2bl5_A 97 KLL 99 (140)
T ss_dssp HHS
T ss_pred HHC
Confidence 876
No 165
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.16 E-value=0.0004 Score=70.24 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=53.5
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-C--------CEEEEEecCHHHHHHHHHHHHHHhhc
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-D--------GTLTVVAKNRSVMEKVLEKVDFIIGR 679 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-d--------g~v~i~~~~~~~~~~a~~~i~~l~~~ 679 (974)
....+.|++++++.+||+||++|++|++++|++|.+. + +.|.|++.. +.+++|+..+..++..
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~-~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEP-EQNRKAVELIIQKIQE 175 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSH-HHHHHHHHHHHHHHHS
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCH-HHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999986 3 378888765 7889999888877643
No 166
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.13 E-value=0.00059 Score=79.53 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=52.1
Q ss_pred ccCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEecccCCC----------------CCCCCCCEEEEEEEEEeCCC
Q 002054 906 KNLKLGTKVAAKVYQVRAR--GLVLDLGGGIRGMYRFENNEK----------------KDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 906 ~~~~vG~vV~G~V~~I~~~--GvFV~L~~gv~Glih~se~~~----------------~~f~vGd~V~vkVl~id~~~ 965 (974)
....+|+++.|+|++|.++ |+||++++|-.||+|.+++.. +.+++||+|.|.|++....+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~ 118 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGN 118 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTT
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeecccc
Confidence 3467999999999999999 999999999999999998631 34889999999999977443
No 167
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.05 E-value=0.001 Score=72.13 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=74.5
Q ss_pred ccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCceEEEEeccCCCcc
Q 002054 680 EIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLKAVSPRPE 759 (974)
Q Consensus 680 ~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K~~~~~~~ 759 (974)
-+++|+++.|+|+++....+.|+|.....|+||.+++. ...++....|++||.|.++|++++..+.+.||+..... ..
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc~~~~~-k~ 201 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCG-RA 201 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSBTTT-TB
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCCCCceEEEeccccc-cc
Confidence 47999999999999999999999988888999999876 34567778899999999999999888889999844211 11
Q ss_pred cccCce-EEEEEeec
Q 002054 760 ADVKGV-VEGSVPVN 773 (974)
Q Consensus 760 ~~~g~~-~~G~vv~i 773 (974)
...|.. ..|.++++
T Consensus 202 ~~lG~L~~~G~l~~V 216 (289)
T 2nn6_G 202 NGMGVIGQDGLLFKV 216 (289)
T ss_dssp CCCCSCCSSCEEECC
T ss_pred ccCCEecCCeEEEEE
Confidence 235666 67777764
No 168
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.04 E-value=0.00056 Score=68.06 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=53.2
Q ss_pred CcceeeeeccchhhhhcCCCccchhhhhhhhCceEEeeC-C-------EEEEEecCHHHHHHHHHHHHHHh
Q 002054 615 PRLATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVSD-G-------TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 615 p~~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~d-g-------~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
|....+.|++++++.+||+||++|+.|++++|++|++.+ + .|.|++ +.+.+.+|+..+..++
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~ 71 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKL 71 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999999999999863 2 488888 6788888888887665
No 169
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.03 E-value=0.00076 Score=67.06 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=52.6
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC--------EEEEEecCHHHHHHHHHHHHHHh
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG--------TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg--------~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
+..+.||+++++.+||+||++|++|++++|++|++. ++ .+.|++ +.+.+++|+..+..++
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii 71 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDIL 71 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHT
T ss_pred EEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999885 33 688887 6788999999988776
No 170
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.94 E-value=0.00062 Score=74.60 Aligned_cols=64 Identities=9% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-----------------CCCCCCCEEEEEEEEEeCCCceeee
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-----------------KDFVVGDELLVKCSSFTGKGIPVVS 970 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-----------------~~f~vGd~V~vkVl~id~~~~~~~~ 970 (974)
.++||+|.|+|.++.++|+||++.....|++|.+++.. ..|++||.|.|+|++++.++..-+|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LS 172 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLH 172 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEEE
Confidence 58999999999999999999999977899999886520 3599999999999999987766655
Q ss_pred e
Q 002054 971 L 971 (974)
Q Consensus 971 ~ 971 (974)
.
T Consensus 173 t 173 (308)
T 2nn6_H 173 T 173 (308)
T ss_dssp C
T ss_pred e
Confidence 4
No 171
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.92 E-value=0.00064 Score=83.75 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=46.9
Q ss_pred CEEEEEEEEEeCCeEEEEeCC-CeEEEEecccCC------------------------CCCCCCCCEEEEEEEEEeCC--
Q 002054 912 TKVAAKVYQVRARGLVLDLGG-GIRGMYRFENNE------------------------KKDFVVGDELLVKCSSFTGK-- 964 (974)
Q Consensus 912 ~vV~G~V~~I~~~GvFV~L~~-gv~Glih~se~~------------------------~~~f~vGd~V~vkVl~id~~-- 964 (974)
+++.|+|.+|++||+||.|++ |+.||||.+++. ...|++||+|+|+|+++|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 799999999999999999998 999999998652 24589999999999999987
Q ss_pred --Cceeeee
Q 002054 965 --GIPVVSL 971 (974)
Q Consensus 965 --~~~~~~~ 971 (974)
++.-+||
T Consensus 751 ~~~kI~lsl 759 (760)
T 2vnu_D 751 SKRKAELLL 759 (760)
T ss_dssp -CCEEEC--
T ss_pred cCCcEEEEe
Confidence 6666655
No 172
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00086 Score=84.33 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCEEEEEEEEEeCCeEEEEeCC-CeEEEEecccCC------------------C------CCCCCCCEEEEEEEEEeCC-
Q 002054 911 GTKVAAKVYQVRARGLVLDLGG-GIRGMYRFENNE------------------K------KDFVVGDELLVKCSSFTGK- 964 (974)
Q Consensus 911 G~vV~G~V~~I~~~GvFV~L~~-gv~Glih~se~~------------------~------~~f~vGd~V~vkVl~id~~- 964 (974)
|++..|+|.+|++||+||.|++ |+.||||.+++. . ..|++||+|+|+|.++|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 9999999999999999999998 999999999763 1 3589999999999999973
Q ss_pred ---Cceeeee
Q 002054 965 ---GIPVVSL 971 (974)
Q Consensus 965 ---~~~~~~~ 971 (974)
++..++|
T Consensus 967 ~~~~kI~Lsl 976 (977)
T 2wp8_J 967 TSKRKAELLL 976 (977)
T ss_dssp SCCCCCCEEE
T ss_pred cCCCceEEEe
Confidence 6777765
No 173
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.82 E-value=0.0013 Score=66.15 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=51.7
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCceEEee--C-----CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS--D-----GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~--d-----g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..+.|++++++.+||++|++|++|+++||++|+++ + ..|.|++. .+.+++|+..|..++
T Consensus 5 ~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~ 70 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLL 70 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999996 2 26788776 788999999988776
No 174
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.62 E-value=0.0021 Score=64.88 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=51.7
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhhCceEEee-CC---------EEEEEecCHHHHHHHHHHHHHHhh
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS-DG---------TLTVVAKNRSVMEKVLEKVDFIIG 678 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~-dg---------~v~i~~~~~~~~~~a~~~i~~l~~ 678 (974)
...+.|++++++.+||+||++|++|+++||++|+++ ++ .+.|++. .+.+++|...+..++.
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIR 77 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHT
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999986 33 5777765 6788899988887763
No 175
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.13 E-value=0.0086 Score=64.95 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=59.7
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC------CCCCCCCCEEEEEEEEEeCCCceeeeecC
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE------KKDFVVGDELLVKCSSFTGKGIPVVSLVD 973 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~------~~~f~vGd~V~vkVl~id~~~~~~~~~~~ 973 (974)
.++||+|-|+|.++......|++..-..|++|.++++ ...|++||-|.|+|++++.++.+-++.+|
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc~~ 196 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCID 196 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSB
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCCCCceEEEecc
Confidence 3799999999999999999999998889999998664 44699999999999999999989888866
No 176
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.69 E-value=0.016 Score=53.09 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=52.3
Q ss_pred cceeeeeccchhhhhcCCCccchhhhhhh-hCceEEee--CCEEEEEecCHHHHHHHHHHHHHHh
Q 002054 616 RLATLKYDNDTLRRLIGPLGALKRKIEEE-TGGRISVS--DGTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 616 ~~~~~~i~~~ki~~vIg~gGk~i~~i~~~-~g~~Idi~--dg~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
....+.+|+..-+.+||++|.+|++|+++ +++.|.+. ++.|.|.++ .+..++|+..++.++
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~-~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGP-TEDVSVAQEQIEGMV 90 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEECC-HHHHHHHHHHHHHHH
Confidence 34567788888899999999999999997 48999886 678999987 788999999888776
No 177
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=94.52 E-value=0.036 Score=53.98 Aligned_cols=59 Identities=17% Similarity=0.430 Sum_probs=48.6
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCc-eEEee---C-------CE--EEEEecCHHHHHHHHHHHHHHh
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGG-RISVS---D-------GT--LTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~-~Idi~---d-------g~--v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..+.+|++..+.+||.+|.|||.+.+.||+ +|++. + +. +.+.+ +.+..+.|+..++..+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVG-TKDSIANATVLLDYHL 140 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEE-EHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEe-CHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999996 88875 1 22 55665 5678999998888766
No 178
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=93.96 E-value=0.068 Score=55.71 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=45.6
Q ss_pred hhhhhcCCCccchhhhhhhhCceEEeeCCEEEEEecCHHHHHHHHHHHHHHh
Q 002054 626 TLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 626 ki~~vIg~gGk~i~~i~~~~g~~Idi~dg~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.++.+||++|++++.|++.||++|.+.+..+.+.+. .+.++.|+..+..++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~~v~i~G~-~~~i~~A~~~i~~li 189 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGN-PIQIEIAKTAIEKLA 189 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETTEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCeEEEEEeC-HHHHHHHHHHHHHHH
Confidence 588999999999999999999999999889998874 567788998888777
No 179
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=93.67 E-value=0.099 Score=53.22 Aligned_cols=60 Identities=28% Similarity=0.337 Sum_probs=52.5
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCceEEee--CCEEEEEe----cCHHHHHHHHHHHHHHh
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS--DGTLTVVA----KNRSVMEKVLEKVDFII 677 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~--dg~v~i~~----~~~~~~~~a~~~i~~l~ 677 (974)
..+.||+++++-+||.+|.+++.|++++|++|.++ +|.+.+.. .+...+.+|.+.+..+.
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~ 71 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAIS 71 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999988 78998873 45678889999887665
No 180
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=92.22 E-value=0.24 Score=55.49 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcceeeeeccchhhhhcCCCc--cchhhhhhhhCceEEee---C-------
Q 002054 586 EHAHKGRLQILDHMEREISAPRTQDDRNSPRLATLKYDNDTLRRLIGPLG--ALKRKIEEETGGRISVS---D------- 653 (974)
Q Consensus 586 ~~A~~~~~~I~~~m~~~i~~~~~~~~~~~p~~~~~~i~~~ki~~vIg~gG--k~i~~i~~~~g~~Idi~---d------- 653 (974)
+.|++++..+++.+.+. +....-+....+.|++.....+||.+| ..|+.|.++||+.|++- +
T Consensus 162 ~~akeA~~~Ll~~l~~~------e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~ 235 (376)
T 3n89_A 162 HELIEAAKRLNEILFRE------SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGN 235 (376)
T ss_dssp HHHHHHHHHHHHHHCC--------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CC
T ss_pred HHHHHHHHHHHHHHHhh------hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCC
Confidence 35777777777776432 222233456678899999999999998 55699999999999863 2
Q ss_pred -CEEEEEecCHHHHHHHHHHHHHHh
Q 002054 654 -GTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 654 -g~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..+.|.+ ..+...+|++.|..++
T Consensus 236 ~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 236 IYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred ceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 1477776 5688999999888765
No 181
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=92.15 E-value=0.32 Score=56.38 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=45.2
Q ss_pred ccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEE
Q 002054 682 EVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSL 751 (974)
Q Consensus 682 ~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~ 751 (974)
++|+.++|.|+++ . +.+|+||++++..+ -.....+++||.|+|+|.++|. ++++.+..
T Consensus 402 ~~g~~f~g~vv~l---------~-~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDR---------R-GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEE---------E-TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEE---------e-CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 6899999987553 2 45799999999765 2234569999999999999998 77777653
No 182
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=92.06 E-value=0.12 Score=52.66 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=45.0
Q ss_pred hhhhhcCCCccchhhhhhhhCceEEeeCCEEEEEecCHHHHHHHHHHHHHHh
Q 002054 626 TLRRLIGPLGALKRKIEEETGGRISVSDGTLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 626 ki~~vIg~gGk~i~~i~~~~g~~Idi~dg~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
.++.+||++|++++.|+.-||++|-+.+.++.+.+. .+.++.|+..++.++
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~-~~~i~~Ar~~i~~li 158 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGD-YERAMAAKQAIEMLA 158 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeC-hHHHHHHHHHHHHHH
Confidence 479999999999999999999999999889988774 467788888888776
No 183
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=90.69 E-value=0.27 Score=55.05 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=46.6
Q ss_pred eeeccchhhhhcCCCc--cchhhhhhhhCceEEeeCC------------EEEEEecCHHHHHHHHHHHHHH
Q 002054 620 LKYDNDTLRRLIGPLG--ALKRKIEEETGGRISVSDG------------TLTVVAKNRSVMEKVLEKVDFI 676 (974)
Q Consensus 620 ~~i~~~ki~~vIg~gG--k~i~~i~~~~g~~Idi~dg------------~v~i~~~~~~~~~~a~~~i~~l 676 (974)
+.|++..-+-+||+|| .+|+.|.++||++|++-|. .|.|++. .+..++|+..+..+
T Consensus 34 v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~l 103 (376)
T 3n89_A 34 MEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRRN 103 (376)
T ss_dssp EECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHHS
T ss_pred EEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHhc
Confidence 4577777789999999 9999999999999998522 4888875 57999999888764
No 184
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=88.92 E-value=2 Score=39.13 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=50.8
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccc-----cc-cccccccCCEEEEE
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPV-----SR-VSDVVSVGQQLSLR 737 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v-----~~-~~~~~~vGd~V~vk 737 (974)
.....|+.+.+.|+++.+.++-|.+.+|..+.|+.+.+.|.+- +. +.+.+++||.|.|+
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 3456799999999999999999999888888899999998752 34 67789999999998
No 185
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=87.14 E-value=4.1 Score=36.07 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=44.9
Q ss_pred cccCcEEEEEEEEEeeceE-EEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEEEccC-CceEE
Q 002054 681 IEVGGIYKGVVTSVKEYGA-FVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GNIKL 749 (974)
Q Consensus 681 ~~~G~i~~G~V~~i~~~G~-fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~-gri~L 749 (974)
+...+...|+|+... .|. |+.-.. +.+-|+|+|.|... . ..+++||.|+..+.. +++ ||...
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-~----~~L~~G~~V~F~v~~-~~k~Gk~~A 77 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-L----QDLKVGDDVEFEVSS-DRRTGKPIA 77 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-T----TTCCTTCCEEEEEEE-CSSSCCEEE
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-c----CCCCCCCEEEEEEEE-CCCCCCcEE
Confidence 344578899999985 444 666554 48999999999764 2 458899999999876 455 75443
No 186
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=85.80 E-value=1.1 Score=43.44 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=41.8
Q ss_pred ceeeeeccchhhhhcCCCccchhhhhhhhCceE-Eee--CCEEEEEecCHHHHHHHHH
Q 002054 617 LATLKYDNDTLRRLIGPLGALKRKIEEETGGRI-SVS--DGTLTVVAKNRSVMEKVLE 671 (974)
Q Consensus 617 ~~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~I-di~--dg~v~i~~~~~~~~~~a~~ 671 (974)
.+.+.|+.+..+.+||++|.+|+.|++++|+.+ ..+ ...+.+.+...+...+++.
T Consensus 5 ~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~~~p~~v~~~~~ 62 (144)
T 2qnd_A 5 HEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARS 62 (144)
T ss_dssp EEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCchheeeccCCHHHHHHHHH
Confidence 467789999999999999999999999999432 122 2467777777666666643
No 187
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=85.05 E-value=1.4 Score=41.88 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=44.8
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCceEEee----CC--EEEEEecCHHHHHHHHHHHHHHh
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISVS----DG--TLTVVAKNRSVMEKVLEKVDFII 677 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi~----dg--~v~i~~~~~~~~~~a~~~i~~l~ 677 (974)
..++++.+..+.+||+||..|+.|+..+++.|.++ +| .|.|+++. ..-.+++.+|..+.
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~-~~Q~rak~MI~sLA 122 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPP-PFRRDVDRMLTDLA 122 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCH-HHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCH-HHHHHHHHHHHHHH
Confidence 36678899999999999999999999999998876 34 46666654 34445666666554
No 188
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=84.32 E-value=1.8 Score=44.68 Aligned_cols=69 Identities=7% Similarity=0.078 Sum_probs=50.8
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEcCCeEEEEecccCCCccccccc------------cccccCCEEEEEEEEEccCCc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFNGGQQGLLHVSELSHEPVSRVS------------DVVSVGQQLSLRCIGQDVRGN 746 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~~g~~Glvhisels~~~v~~~~------------~~~~vGd~V~vkVl~id~~gr 746 (974)
..+.+|++++|+|+.+.+.|+.+-+.+-.+.+|+...|..++.-++. +--++|+.|++||.+++.+|.
T Consensus 125 FrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 125 WQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp ECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred EecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 36899999999999999977777666667889999888544211111 112369999999999987664
Q ss_pred e
Q 002054 747 I 747 (974)
Q Consensus 747 i 747 (974)
+
T Consensus 205 ~ 205 (214)
T 2rf4_A 205 V 205 (214)
T ss_dssp S
T ss_pred E
Confidence 3
No 189
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=82.01 E-value=6.7 Score=33.41 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=38.1
Q ss_pred EEEEEEEEEee---ceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCc
Q 002054 686 IYKGVVTSVKE---YGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN 746 (974)
Q Consensus 686 i~~G~V~~i~~---~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gr 746 (974)
..+|+|+...+ ||....-.++.+ |+|+|.+.... .+++||.|+..+.. +++|.
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g~kG~ 57 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT-NNKGL 57 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-CSSSE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe-CCCCc
Confidence 46899999843 555444334566 99999997653 48899999999875 55673
No 190
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=80.01 E-value=5.6 Score=34.31 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=42.4
Q ss_pred CcEEEEEEEEEee---ceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCc
Q 002054 684 GGIYKGVVTSVKE---YGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN 746 (974)
Q Consensus 684 G~i~~G~V~~i~~---~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gr 746 (974)
...++|+|+...+ ||....-.++.+-|+|+|.|.......-...+++||.|+..+.. +++|.
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~-~~kG~ 70 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE-GEKGA 70 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE-CSSSE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE-CCCCc
Confidence 4568899999853 55554444468999999999764111112348899999998866 45664
No 191
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=78.54 E-value=2.7 Score=36.44 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=44.0
Q ss_pred cEEEEEEEEEeeceEE-EEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEE
Q 002054 685 GIYKGVVTSVKEYGAF-VEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLS 750 (974)
Q Consensus 685 ~i~~G~V~~i~~~G~f-V~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS 750 (974)
-.++|+|++..+.|.| |.+.+|..-+.|++= +.+.-.-.+.+||.|.+.+...|. +|+|..-
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~G----K~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISG----KMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECH----HHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCc----ceecCCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 3578999999977765 999888888888873 222212236789999998776554 6777653
No 192
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=77.26 E-value=6.4 Score=34.59 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=45.7
Q ss_pred cccccCcEEEEEEEEEeeceEEEEEc--CCeEEEEec-ccCCCccccccccccccCCEEEEEEEEEcc
Q 002054 679 REIEVGGIYKGVVTSVKEYGAFVEFN--GGQQGLLHV-SELSHEPVSRVSDVVSVGQQLSLRCIGQDV 743 (974)
Q Consensus 679 ~~~~~G~i~~G~V~~i~~~G~fV~l~--~g~~Glvhi-sels~~~v~~~~~~~~vGd~V~vkVl~id~ 743 (974)
.++-+|++.+|.|. +.+.-.+|.|. +|.++++-- -++-.++..+..+.+ +|..|+|+|+.+|.
T Consensus 28 ~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 28 MDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred cccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 36789999999885 46677778884 468888632 233334555666655 89999999999985
No 193
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=75.72 E-value=9.6 Score=32.44 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=38.3
Q ss_pred EEEEEEEEE---eCCeEEEEeCCCeEEEEecccCCCC-CCCCCCEEEEEEEEEeCCCc
Q 002054 913 KVAAKVYQV---RARGLVLDLGGGIRGMYRFENNEKK-DFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 913 vV~G~V~~I---~~~GvFV~L~~gv~Glih~se~~~~-~f~vGd~V~vkVl~id~~~~ 966 (974)
..+|+|+.. +-||..-.-+++-+ |+|+|.+... .+++||+|...+.. +++|.
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g~l~~G~~V~F~~~~-g~kG~ 57 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPDLIKKDAAVTFEPTT-NNKGL 57 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGGGCCTTCEEEEEEEE-CSSSE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCCCCCCCCEEEEEEEe-CCCCc
Confidence 468999998 44675544444567 9999988532 79999999999864 56663
No 194
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=75.34 E-value=10 Score=31.87 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=39.0
Q ss_pred EEEEEEEEEee---ceEEEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEEEccCC
Q 002054 686 IYKGVVTSVKE---YGAFVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRG 745 (974)
Q Consensus 686 i~~G~V~~i~~---~G~fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~g 745 (974)
...|+|+...+ || |+.-.. +.+-|+|+|.+..... ..+++||.|+..+.. +++|
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~kG 62 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTNGF----KTLAEGQRVEFEITN-GAKG 62 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCSSC----CCCCTTCEEEEEEEE-ETTE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHcccccC----cCCCCCCEEEEEEEE-CCCC
Confidence 47899999843 56 455444 4789999999975432 247899999998876 4455
No 195
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=75.00 E-value=16 Score=32.24 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=44.0
Q ss_pred cCCCCCEEEEEEEEEe-CCeEEEEeCC-CeEEEEecccCCC--CCCCCCCEEEEEEEEEeCCCc
Q 002054 907 NLKLGTKVAAKVYQVR-ARGLVLDLGG-GIRGMYRFENNEK--KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~-~~GvFV~L~~-gv~Glih~se~~~--~~f~vGd~V~vkVl~id~~~~ 966 (974)
..+..+..+|+|+... -|| ||.-++ +-+=|+|++.+.. ..+++||+|...+..-+..|+
T Consensus 12 ~~s~~~~~~G~Vkwf~KGfG-FI~~ddgg~DVFvH~s~i~~~~~~L~~G~~V~F~v~~~~k~Gk 74 (89)
T 1wfq_A 12 GTSAALRETGVIEKLLTSYG-FIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGK 74 (89)
T ss_dssp SSSCCCEEEEEEEEECSSEE-EEEETTTTEEEEEETTTCSSCTTTCCTTCCEEEEEEECSSSCC
T ss_pred CCCcccccceEEEEEeCCee-EEecCCCCccEEEEhHHhhCccCCCCCCCEEEEEEEECCCCCC
Confidence 3455678999999994 355 555555 5899999998854 478999999999876443364
No 196
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=74.98 E-value=9.2 Score=31.84 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=38.4
Q ss_pred EEEEEEEEee---ceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCc
Q 002054 687 YKGVVTSVKE---YGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN 746 (974)
Q Consensus 687 ~~G~V~~i~~---~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gr 746 (974)
.+|+|+...+ ||....-.++.+-|+|+|.+...-. ..+++||.|+..+.. +++|.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~kG~ 59 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGF----KTLKEGQRVSFDVTT-GPKGK 59 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEE-ETTEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEE-CCCCc
Confidence 3689988843 4544443346899999999965422 348899999998866 45664
No 197
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=74.97 E-value=8.1 Score=32.93 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=40.7
Q ss_pred EEEEEEEee-ceE-EEEEcCCeEEEEecccCC-CccccccccccccCCEEEEEEEEEccCCceEEEEe
Q 002054 688 KGVVTSVKE-YGA-FVEFNGGQQGLLHVSELS-HEPVSRVSDVVSVGQQLSLRCIGQDVRGNIKLSLK 752 (974)
Q Consensus 688 ~G~V~~i~~-~G~-fV~l~~g~~Glvhisels-~~~v~~~~~~~~vGd~V~vkVl~id~~gri~LS~K 752 (974)
+|+|+...+ .|. |+.-.+|.+-|+|+|.+. ...+ ..+++||.|+..+.. +++|.--...+
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~-g~kG~~A~~V~ 64 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP-TPKGLAAKAIS 64 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC-TTTSCEEEEEE
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE-CCCCceeEEEE
Confidence 688988843 233 555556788999999997 4422 347899999998864 55775333333
No 198
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=73.66 E-value=19 Score=29.70 Aligned_cols=54 Identities=26% Similarity=0.490 Sum_probs=38.5
Q ss_pred EEEEEEEEee-ceE-EEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCC
Q 002054 687 YKGVVTSVKE-YGA-FVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRG 745 (974)
Q Consensus 687 ~~G~V~~i~~-~G~-fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~g 745 (974)
.+|+|+...+ .|. |+.-.+|.+-|+|+|.+..... ..+++||.|+..+.. +++|
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~kG 57 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQ-GNRG 57 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEE-ETTE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEE-CCCC
Confidence 4789988853 233 5555556889999999976532 237889999998865 4455
No 199
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=71.58 E-value=14 Score=31.16 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=36.6
Q ss_pred EEEEEEEEee-ceE-EEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEE
Q 002054 687 YKGVVTSVKE-YGA-FVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740 (974)
Q Consensus 687 ~~G~V~~i~~-~G~-fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~ 740 (974)
.+|+|+...+ .|. |+.-..|.+-|+|+|.+....+ ..+++||.|+..+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGF----RTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSC----SSCCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCC----CCCCCCCEEEEEEEE
Confidence 4789988853 333 5555557889999999976432 237899999998865
No 200
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=70.35 E-value=4.9 Score=35.46 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=42.9
Q ss_pred ccCcEEEEEEEEEeeceE-EEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEEEccCCc
Q 002054 682 EVGGIYKGVVTSVKEYGA-FVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRGN 746 (974)
Q Consensus 682 ~~G~i~~G~V~~i~~~G~-fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~gr 746 (974)
..++...|+|+...+ |. |+.-.+ +.+-|+|+|.+... . ..+++||.|+..+.. +.+|+
T Consensus 14 ~~~~~~~G~Vk~f~k-GfGFI~~ddgg~DvFvH~S~i~~~-~----~~L~~G~~V~F~~~~-g~~Gk 73 (88)
T 2yty_A 14 SNSKRLLGYVATLKD-NFGFIETANHDKEIFFHYSEFSGD-V----DSLELGDMVEYSLSK-GKGNK 73 (88)
T ss_dssp SSCCCEEEEEEEECS-SEEEEECSSSSCEEEEETTTCCSC-T----TTCCTTCEEEECCCC-CSCSC
T ss_pred CCCCceeEEEEEEEC-CccEEecCCCCceEEEEEhhhccc-c----CcCCCCCEEEEEEEE-CCCCC
Confidence 357889999999974 33 666544 68999999999765 2 448899999987754 34554
No 201
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=69.01 E-value=9.1 Score=31.72 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.1
Q ss_pred EEEEEEEEee-ceE-EEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCC
Q 002054 687 YKGVVTSVKE-YGA-FVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRG 745 (974)
Q Consensus 687 ~~G~V~~i~~-~G~-fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~g 745 (974)
++|+|+...+ .|. |+.-.+|.+-|+|+|.+...-+ ..+++||.|+..+.. +++|
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~~G 56 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQE-GKKG 56 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSC----CCCCSSSEEEEEEEC-SSSC
T ss_pred CcEEEEEEECCCCEEEEecCCCceEEEEhHHccccCC----CCCCCCCEEEEEEEE-CCCC
Confidence 3688888853 233 5555567889999999976432 337899999988765 4456
No 202
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=68.54 E-value=9.4 Score=44.12 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=37.6
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC-----CCCCCCCCEEEEEEEEEeCCCcee
Q 002054 909 KLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE-----KKDFVVGDELLVKCSSFTGKGIPV 968 (974)
Q Consensus 909 ~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~-----~~~f~vGd~V~vkVl~id~~~~~~ 968 (974)
++|+...|.|.++.+. .|+||.++++ ...|++||+|+|+|.++|.....+
T Consensus 402 ~~g~~f~g~vv~l~~~----------~glV~v~~l~~d~~~~~~~~lGd~V~V~v~~vd~~~~~i 456 (469)
T 2r7d_A 402 QPERVWDAVVVDRRGA----------QATLLIPDLAFDVQVNTPAAPGTALQVQFADIDLPQMRV 456 (469)
T ss_dssp CTTCCEEEEEEEEETT----------EEEEEEGGGTEEEEEECCCCTTCEEEEEEEEEETTTTEE
T ss_pred CCCCEEEEEEEEEeCc----------EEEEEECCCCeEEecCCcCCCCCEEEEEEEEEccCCCEE
Confidence 6899999988665433 4555555543 357999999999999999877655
No 203
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=68.50 E-value=11 Score=38.93 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=46.8
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCC-------------------CCCCCCCEEEEEEEEEeCCCc
Q 002054 907 NLKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEK-------------------KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 907 ~~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~-------------------~~f~vGd~V~vkVl~id~~~~ 966 (974)
.-.+|+++.|+|+++.+.|+.+-+-+=++.+|+...++. +.-++|++|+.||.+++.+|.
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 346999999999999997777755566778999886531 112369999999999998774
No 204
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=68.27 E-value=5.9 Score=37.47 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=40.1
Q ss_pred ccCcEEEEEEEEEeeceEEEEEcCCe--EEEEecccCCCccccccccccccCCEEEEEE
Q 002054 682 EVGGIYKGVVTSVKEYGAFVEFNGGQ--QGLLHVSELSHEPVSRVSDVVSVGQQLSLRC 738 (974)
Q Consensus 682 ~~G~i~~G~V~~i~~~G~fV~l~~g~--~Glvhisels~~~v~~~~~~~~vGd~V~vkV 738 (974)
+.|.-|.|+|+.+.+.+++|.+.+.- +--+|.+++---........|.+||+|+|..
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 45999999999999999999996532 3577777774322222234589999999853
No 205
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=66.57 E-value=37 Score=29.86 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=45.4
Q ss_pred ccccCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEecccC-CC---CCCC---CCCEEEEEEEEEeC
Q 002054 904 SAKNLKLGTKVAAKVYQVRARGLVLDLGG--GIRGMYRFENN-EK---KDFV---VGDELLVKCSSFTG 963 (974)
Q Consensus 904 ~~~~~~vG~vV~G~V~~I~~~GvFV~L~~--gv~Glih~se~-~~---~~f~---vGd~V~vkVl~id~ 963 (974)
++.++..|++.+|.|+- +++-++|.|.+ |..+++--.-. .. ++++ +|-+|+++|+.+|.
T Consensus 26 ~~~~~~~g~VtkGiVy~-kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkLVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 26 SAMDLSPGSVHEGIVYF-KDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERLVGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCCCSSCEEEEEEEE-ETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEEEECS
T ss_pred eccccCCCceEeeEEEE-eCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHhcCceEEEEEEEecc
Confidence 46789999999999985 88889999987 88998865511 11 1122 79999999999984
No 206
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=65.57 E-value=6.3 Score=35.42 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=38.8
Q ss_pred cCcEEEEEEEEEeeceE-EEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEE
Q 002054 683 VGGIYKGVVTSVKEYGA-FVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCI 739 (974)
Q Consensus 683 ~G~i~~G~V~~i~~~G~-fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl 739 (974)
......|+|+.. ..|. |+.-.. +.+-|+|+|.+... . ..+++||.|...+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-~----~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-L----ETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-T----TSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-c----CCCCCCCEEEEEEE
Confidence 357789999988 5444 666544 48899999999765 2 44889999999884
No 207
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=61.16 E-value=21 Score=34.24 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=49.7
Q ss_pred CcEEEEEEEEEeeceEE-EEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEEEEec
Q 002054 684 GGIYKGVVTSVKEYGAF-VEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKLSLKA 753 (974)
Q Consensus 684 G~i~~G~V~~i~~~G~f-V~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~LS~K~ 753 (974)
...+.|+|+...+.+.| |++.+|..-|.|++- +++. .-.++.||.|.|.....|. +|+|..-.+.
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~G----KmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRG----KLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECCS----GGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecc----ccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 34688999999999887 889999999999874 3333 4448899999998765554 6788776543
No 208
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=60.82 E-value=33 Score=29.40 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=41.6
Q ss_pred CCEEEEEEEEEe---CCeEEEEeCCCeEEEEecccCCC-------CCCCCCCEEEEEEEEEeCCCceee
Q 002054 911 GTKVAAKVYQVR---ARGLVLDLGGGIRGMYRFENNEK-------KDFVVGDELLVKCSSFTGKGIPVV 969 (974)
Q Consensus 911 G~vV~G~V~~I~---~~GvFV~L~~gv~Glih~se~~~-------~~f~vGd~V~vkVl~id~~~~~~~ 969 (974)
....+|+|+... -||....-+++-+=|+|+|.+.. ..+++||+|...+.. +++|...+
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~-~~kG~~A~ 73 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE-GEKGAEAA 73 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE-CSSSEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE-CCCCceeE
Confidence 456789999994 36754443447899999998853 357899999998864 45665433
No 209
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=59.77 E-value=37 Score=28.41 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=39.0
Q ss_pred EEEEEEEEEe---CCeEEEEeCC-CeEEEEecccCCC---CCCCCCCEEEEEEEEEeCCCc
Q 002054 913 KVAAKVYQVR---ARGLVLDLGG-GIRGMYRFENNEK---KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 913 vV~G~V~~I~---~~GvFV~L~~-gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~~~ 966 (974)
..+|+|+... -|| ||.-++ +-+=|+|+|.+.. +.+++||+|+..+.. +++|-
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~-~~kG~ 63 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITN-GAKGP 63 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEE-ETTEE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEE-CCCCC
Confidence 4789999984 467 555555 4788999998853 368899999998875 45563
No 210
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=59.19 E-value=12 Score=36.11 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=40.1
Q ss_pred cCcEEEEEEEEEee---ceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEE
Q 002054 683 VGGIYKGVVTSVKE---YGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQ 741 (974)
Q Consensus 683 ~G~i~~G~V~~i~~---~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~i 741 (974)
.|..++|+|+.... ||.+..-.++.+-|+|+|.|... ..++.||.|+..+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 58889999999843 55554444458999999999633 2589999999998763
No 211
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=57.65 E-value=12 Score=35.40 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeE--EEEecccCC-------CCCCCCCCEEEEEE
Q 002054 909 KLGTKVAAKVYQVRARGLVLDLGGGIR--GMYRFENNE-------KKDFVVGDELLVKC 958 (974)
Q Consensus 909 ~vG~vV~G~V~~I~~~GvFV~L~~gv~--Glih~se~~-------~~~f~vGd~V~vkV 958 (974)
..|...+|+|+.|.+-+++|.+++.-. =-+|+++.. ...|.+||+|+|-.
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 359999999999999999999987533 466666541 45799999999854
No 212
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=56.91 E-value=16 Score=32.19 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCCCEEEEEEEEEeC-CeEEEEeCC-CeEEEEecccCCC--CCCCCCCEEEEEEEEEeCCC
Q 002054 909 KLGTKVAAKVYQVRA-RGLVLDLGG-GIRGMYRFENNEK--KDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 909 ~vG~vV~G~V~~I~~-~GvFV~L~~-gv~Glih~se~~~--~~f~vGd~V~vkVl~id~~~ 965 (974)
..++..+|+|+...+ || ||.-++ +-+=|+|+|.+.. ..+++||+|+..+.. +++|
T Consensus 14 ~~~~~~~G~Vk~f~kGfG-FI~~ddgg~DvFvH~S~i~~~~~~L~~G~~V~F~~~~-g~~G 72 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFG-FIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSK-GKGN 72 (88)
T ss_dssp SSCCCEEEEEEEECSSEE-EEECSSSSCEEEEETTTCCSCTTTCCTTCEEEECCCC-CSCS
T ss_pred CCCCceeEEEEEEECCcc-EEecCCCCceEEEEEhhhccccCcCCCCCEEEEEEEE-CCCC
Confidence 357889999999954 55 556555 6899999998853 478999999998753 3455
No 213
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=51.83 E-value=28 Score=33.58 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=39.8
Q ss_pred cEEEEEEEEEee---ceEEEEE-------cCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCC
Q 002054 685 GIYKGVVTSVKE---YGAFVEF-------NGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRG 745 (974)
Q Consensus 685 ~i~~G~V~~i~~---~G~fV~l-------~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~g 745 (974)
...+|+|+-... ||.+..- .++.+-|||+|.|....++ .+++||.|+..+.. +.+|
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~----~l~eG~~V~f~~~~-g~kG 73 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFR----SLKEGEAVEFTFKK-SAKG 73 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSC----CCCTTCEEEEEEEE-ETTE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCc----cCCCCCEEEEEEEE-cccc
Confidence 457899999843 5554432 2467899999999655332 37899999999877 4456
No 214
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=50.56 E-value=16 Score=29.46 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=31.1
Q ss_pred CEEEEEEEEEeCCe----EEEEeCCC-eEEEEecccCCCCCCCCCCEEEEEE
Q 002054 912 TKVAAKVYQVRARG----LVLDLGGG-IRGMYRFENNEKKDFVVGDELLVKC 958 (974)
Q Consensus 912 ~vV~G~V~~I~~~G----vFV~L~~g-v~Glih~se~~~~~f~vGd~V~vkV 958 (974)
..+.|+|.+|...| +.++++++ +...+.......-.+++|++|.+.+
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEE
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEE
Confidence 46899999998877 44455554 3344443322223689999999886
No 215
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=50.22 E-value=30 Score=33.45 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=40.1
Q ss_pred CCCCEEEEEEEEEe---CCeEEEEeCCCeEEEEecccCC-CCCCCCCCEEEEEEEEE
Q 002054 909 KLGTKVAAKVYQVR---ARGLVLDLGGGIRGMYRFENNE-KKDFVVGDELLVKCSSF 961 (974)
Q Consensus 909 ~vG~vV~G~V~~I~---~~GvFV~L~~gv~Glih~se~~-~~~f~vGd~V~vkVl~i 961 (974)
..|+..+|+|+... -||..-.-+++-+=|+|++.+. ...+++||+|...|...
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSBCCCTTCEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCCcCCCCCEEEEEEEec
Confidence 35788999999984 4675444333588999999774 23799999999998764
No 216
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=49.60 E-value=29 Score=29.94 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=38.5
Q ss_pred CEEEEEEEEEeCCeE-EEEeCCCeEEEEecc-cC--CCCCCCCCCEEEEEEEEEe
Q 002054 912 TKVAAKVYQVRARGL-VLDLGGGIRGMYRFE-NN--EKKDFVVGDELLVKCSSFT 962 (974)
Q Consensus 912 ~vV~G~V~~I~~~Gv-FV~L~~gv~Glih~s-e~--~~~~f~vGd~V~vkVl~id 962 (974)
-.+.|+|.+..+.|. .|.+++|..=+||++ .+ ..-...+||.|.+.....|
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd 68 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYD 68 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccC
Confidence 357899999986555 488999877889987 22 1335789999999877655
No 217
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=48.59 E-value=44 Score=27.61 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=39.2
Q ss_pred EEEEEEEEe---CCeEEEEeCC-CeEEEEecccCCC---CCCCCCCEEEEEEEEEeCCCceee
Q 002054 914 VAAKVYQVR---ARGLVLDLGG-GIRGMYRFENNEK---KDFVVGDELLVKCSSFTGKGIPVV 969 (974)
Q Consensus 914 V~G~V~~I~---~~GvFV~L~~-gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~~~~~~ 969 (974)
.+|+|+... -||. |.-++ +-+=|+|+|.+.. ..+++||+|...+.. +++|....
T Consensus 2 ~~G~Vk~fn~~kGfGF-I~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~-~~kG~~A~ 62 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGF-ITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTT-GPKGKQAA 62 (67)
T ss_dssp EEEEEEEEETTTTEEE-EEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEE-ETTEEEEE
T ss_pred CCEEEEEEECCCCeEE-EecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEE-CCCCccce
Confidence 479999984 4665 45444 6899999998852 579999999999864 45565433
No 218
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=48.40 E-value=42 Score=29.61 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=37.8
Q ss_pred EEEEEEEEEee---ceEEEE-------EcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEccCC
Q 002054 686 IYKGVVTSVKE---YGAFVE-------FNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVRG 745 (974)
Q Consensus 686 i~~G~V~~i~~---~G~fV~-------l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~g 745 (974)
..+|+|+-... ||.... ..++.+-|||+|.|...-++ .|..||.|+..+.. .++|
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~----~L~eG~~V~f~v~~-g~kG 72 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFR----SLKEGEPVEFTFKK-SSKG 72 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSC----CCCTTCEEEEEEEE-ETTE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCC----ccCCCCEEEEEEEE-CCCC
Confidence 56899988743 444431 23467899999999654332 37889999998876 3455
No 219
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=46.57 E-value=19 Score=29.32 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=31.9
Q ss_pred CEEEEEEEEEeCCe----EEEEeCCC--eEEEEecccCCCCCCCCCCEEEEEE
Q 002054 912 TKVAAKVYQVRARG----LVLDLGGG--IRGMYRFENNEKKDFVVGDELLVKC 958 (974)
Q Consensus 912 ~vV~G~V~~I~~~G----vFV~L~~g--v~Glih~se~~~~~f~vGd~V~vkV 958 (974)
..+.|+|.+|...| +.+++++| +...+.......-.+++|++|.+.+
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~i 59 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVV 59 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEE
Confidence 46899999998877 44455544 5555554322223589999999875
No 220
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.01 E-value=32 Score=31.64 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=49.3
Q ss_pred cccCcEEEEEEEEEeeceEE-EEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEc-c-CCceEEEEe
Q 002054 681 IEVGGIYKGVVTSVKEYGAF-VEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQD-V-RGNIKLSLK 752 (974)
Q Consensus 681 ~~~G~i~~G~V~~i~~~G~f-V~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id-~-~gri~LS~K 752 (974)
+..| .+.|+|+.....+.| |++.+|..-|.|++-= +++ .-.++.||.|.|.....| . +|+|..-.+
T Consensus 12 p~eg-e~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK----~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~ 80 (111)
T 2dgy_A 12 PSNQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSK----YRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp CCSS-CEEEEEEECCSSSEEEEECTTSCEEEEECCTT----CCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECC
T ss_pred CCCC-eEEEEEEEeCCCCEEEEEeCCCCEEEEEechh----hcc-cEEEcCCCEEEEEecccCCcceEEEEEEeC
Confidence 4445 478999999999887 8888999999998743 333 334889999999987665 2 577766554
No 221
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=45.18 E-value=8.5 Score=34.91 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=46.9
Q ss_pred CcEEEEEEEEEeeceEE-EEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEc-c-CCceEEE
Q 002054 684 GGIYKGVVTSVKEYGAF-VEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQD-V-RGNIKLS 750 (974)
Q Consensus 684 G~i~~G~V~~i~~~G~f-V~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id-~-~gri~LS 750 (974)
.....|+|++....+.| |++.+|..-+.|++- +.+. .-.++.||.|.|.....| . +|+|..-
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~G----KmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r 83 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLDGKTRLGRIPG----RLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWR 83 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEETTEEEEEECCH----HHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcc----ccee-eEEecCCCEEEEEeccCCCCceEEEEEE
Confidence 34688999999999887 889999999999873 3443 344889999999877766 2 5665543
No 222
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=43.85 E-value=28 Score=31.16 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=39.9
Q ss_pred CCCEEEEEEEEE-eCCeEEEEeCC-CeEEEEecccCCC--CCCCCCCEEEEEEEEEeCCCc
Q 002054 910 LGTKVAAKVYQV-RARGLVLDLGG-GIRGMYRFENNEK--KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 910 vG~vV~G~V~~I-~~~GvFV~L~~-gv~Glih~se~~~--~~f~vGd~V~vkVl~id~~~~ 966 (974)
.....+|+|+.. +-|| ||.-++ +-+=|+|++.+.. ..+++||+|...+. +.++.
T Consensus 15 ~~~~~~G~Vkwf~KGfG-FI~~ddg~~DvFvH~s~i~~~~~~L~~G~~V~F~v~--~~~~g 72 (97)
T 2ytx_A 15 KQARCQGVVCAMKEAFG-FIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIK--DRNGK 72 (97)
T ss_dssp CCCCEEEEECCCCSSEE-EEECSSSCCCEEEETTTCCSCTTSCCSCCEEEEEEC--CCSSS
T ss_pred CCcceeEEEEEEeCCce-EEecCCCCceEEEEehHhccccCCCCCCCEEEEEEE--cCCCC
Confidence 367789999988 3355 555555 4889999998853 46899999999994 34444
No 223
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=48.33 E-value=5.3 Score=33.60 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=36.7
Q ss_pred cEEEEEEEEEe---eceEEEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEE
Q 002054 685 GIYKGVVTSVK---EYGAFVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740 (974)
Q Consensus 685 ~i~~G~V~~i~---~~G~fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~ 740 (974)
..++|+|+... .||....-.++.+-|+|+|.+..... ..+++||.|+..+..
T Consensus 3 ~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 3 TNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 34778888773 35655544446889999999975432 237889999988755
No 224
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=39.08 E-value=17 Score=31.24 Aligned_cols=54 Identities=26% Similarity=0.585 Sum_probs=38.4
Q ss_pred cEEEEEEEEEee-ceEEEEEcCC--eEEEEecccCCCccccccccccccCCEEEEEEEEEccC-Cc
Q 002054 685 GIYKGVVTSVKE-YGAFVEFNGG--QQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDVR-GN 746 (974)
Q Consensus 685 ~i~~G~V~~i~~-~G~fV~l~~g--~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~~-gr 746 (974)
....|+|..+.+ || |+.-..+ .+-|+|+|.+... ..+++||.|+..+.. +++ |+
T Consensus 7 ~~~~G~V~~~~KGfG-FI~~ddg~g~DvFvH~s~i~~g------~~l~~G~~V~F~v~~-~~k~G~ 64 (79)
T 2ytv_A 7 GLRRATVECVKDQFG-FINYEVGDSKKLFFHVKEVQDG------IELQAGDEVEFSVIL-NQRTGK 64 (79)
T ss_dssp SBCCEEEEECCSSEE-EESCCCSSSSSEEEETTTCCSS------CCCCTTCEEECBCEE-CSSSCC
T ss_pred CcccEEEEEecccce-eEeCCCCCCCcEEEEhHHcCCC------CcCCCCCEEEEEEEE-CCCCCC
Confidence 456789988843 34 5554433 7899999999732 358899999998866 444 65
No 225
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=38.71 E-value=10 Score=33.56 Aligned_cols=49 Identities=16% Similarity=0.380 Sum_probs=36.7
Q ss_pred cEEEEEEEEEeeceE-EEEEcC-CeEEEEecccCCCccccccccccccCCEEEEEEEE
Q 002054 685 GIYKGVVTSVKEYGA-FVEFNG-GQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIG 740 (974)
Q Consensus 685 ~i~~G~V~~i~~~G~-fV~l~~-g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~ 740 (974)
+..+|+|+... .|. |+.-.. +.+-|+|+|.+... ..+++||.|+..+..
T Consensus 7 ~r~~G~Vk~f~-KGfGFI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMR-DGFGFIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECC-TTBCEEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCBC
T ss_pred cceeEEEEEEe-CCcceeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEEe
Confidence 46789999985 333 555544 58899999999642 358999999988755
No 226
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=34.85 E-value=17 Score=35.11 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred eeeeeccchhhhhcCCCccchhhhhhhhCceEEe
Q 002054 618 ATLKYDNDTLRRLIGPLGALKRKIEEETGGRISV 651 (974)
Q Consensus 618 ~~~~i~~~ki~~vIg~gGk~i~~i~~~~g~~Idi 651 (974)
..+-+++..++..||++|..++.+.+++|.+||+
T Consensus 38 ~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdI 71 (144)
T 2cxc_A 38 LIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEV 71 (144)
T ss_dssp EEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEE
T ss_pred EEEEEeCCCccccCccCchHHHHHHHHhCCeeEE
Confidence 3455677789999999999999999999999985
No 227
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=31.70 E-value=87 Score=25.65 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=37.8
Q ss_pred EEEEEEEeC---CeEEEEeCCCeEEEEecccCCC---CCCCCCCEEEEEEEEEeCCCc
Q 002054 915 AAKVYQVRA---RGLVLDLGGGIRGMYRFENNEK---KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 915 ~G~V~~I~~---~GvFV~L~~gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~~~ 966 (974)
+|+|+...+ || ||.-++|-+=|+|.|.+.. ..+++||+|...+.. +++|.
T Consensus 2 ~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~-~~~G~ 57 (66)
T 1g6p_A 2 RGKVKWFDSKKGYG-FITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQE-GKKGP 57 (66)
T ss_dssp CEEEEEEETTTTEE-EEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEEC-SSSCC
T ss_pred cEEEEEEECCCCEE-EEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEE-CCCCC
Confidence 689999853 55 5666677888999998853 468999999998854 55663
No 228
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=31.68 E-value=2.1e+02 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred EEEEEEEEeC---CeEEEEeCCCeEEEEecccCCC---CCCCCCCEEEEEEEEEeCCCc
Q 002054 914 VAAKVYQVRA---RGLVLDLGGGIRGMYRFENNEK---KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 914 V~G~V~~I~~---~GvFV~L~~gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~~~ 966 (974)
.+|+|+...+ || ||.-++|-+=|+|.|.+.. ..+.+||+|...+.. +++|.
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~-~~kG~ 58 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYG-FIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQ-GNRGP 58 (66)
T ss_dssp EEEEEEEEETTTTEE-EEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEE-ETTEE
T ss_pred CceEEEEEECCCCeE-EEecCCCccEEEEHHHccccCCCCCCCCCEEEEEEEE-CCCCc
Confidence 4799999853 55 5666667889999998853 358899999998854 45563
No 229
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=31.21 E-value=1.4e+02 Score=24.96 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=36.5
Q ss_pred EEEEEEEEeC---CeEEEEeCCCeEEEEecccCCC---CCCCCCCEEEEEEEEE
Q 002054 914 VAAKVYQVRA---RGLVLDLGGGIRGMYRFENNEK---KDFVVGDELLVKCSSF 961 (974)
Q Consensus 914 V~G~V~~I~~---~GvFV~L~~gv~Glih~se~~~---~~f~vGd~V~vkVl~i 961 (974)
.+|+|+...+ || ||.-++|-+=|+|+|.+.. ..+.+||+|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYG-FIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEEETTTTEE-EEECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECC
T ss_pred CCEEEEEEECCCCEE-EEecCCCCcEEEEhhhccccCCCCCCCCCEEEEEEEEC
Confidence 4799999853 45 5666667889999998853 4689999999988644
No 230
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=31.19 E-value=1.6e+02 Score=24.47 Aligned_cols=39 Identities=3% Similarity=-0.013 Sum_probs=32.1
Q ss_pred cccCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEecccC
Q 002054 905 AKNLKLGTKVAAKVYQVRAR--GLVLDLGGGIRGMYRFENN 943 (974)
Q Consensus 905 ~~~~~vG~vV~G~V~~I~~~--GvFV~L~~gv~Glih~se~ 943 (974)
...+.=|.-..|+|.+|... -.+|++.+|..-.++..++
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi 61 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDI 61 (66)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTE
T ss_pred EEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecc
Confidence 34468899999999999863 6788999999998887655
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=30.37 E-value=97 Score=29.74 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=38.6
Q ss_pred CEEEEEEEEEe---CCeEEEEe-------CCCeEEEEecccCCC---CCCCCCCEEEEEEEEEeCCC
Q 002054 912 TKVAAKVYQVR---ARGLVLDL-------GGGIRGMYRFENNEK---KDFVVGDELLVKCSSFTGKG 965 (974)
Q Consensus 912 ~vV~G~V~~I~---~~GvFV~L-------~~gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~~ 965 (974)
..++|+|+... -||....- +++-+=|+|+|.+.. ..+++||+|+..|..= ++|
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g-~kG 73 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS-AKG 73 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEE-TTE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEc-ccc
Confidence 45789999994 46655433 246789999998743 4678999999988764 455
No 232
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=27.31 E-value=48 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=19.8
Q ss_pred ecccCCCCCCCCCCEEEEE----------EEEEeCCCceeee
Q 002054 939 RFENNEKKDFVVGDELLVK----------CSSFTGKGIPVVS 970 (974)
Q Consensus 939 h~se~~~~~f~vGd~V~vk----------Vl~id~~~~~~~~ 970 (974)
|.+++ .+.|++||.|+|. |+.++.+-..++|
T Consensus 10 p~~~L-rK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~S 50 (69)
T 2do3_A 10 PAQEL-RKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS 50 (69)
T ss_dssp CCCCC-CSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred cHHHc-eeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEe
Confidence 33444 5778888888764 7777766555444
No 233
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=27.24 E-value=1.7e+02 Score=24.62 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=39.0
Q ss_pred EEEEEEEe---CCeEEEEeCCCeEEEEecccCC-C---CCCCCCCEEEEEEEEEeCCCcee
Q 002054 915 AAKVYQVR---ARGLVLDLGGGIRGMYRFENNE-K---KDFVVGDELLVKCSSFTGKGIPV 968 (974)
Q Consensus 915 ~G~V~~I~---~~GvFV~L~~gv~Glih~se~~-~---~~f~vGd~V~vkVl~id~~~~~~ 968 (974)
+|+|+... -|| ||.-++|-+=|+|+|.+. . ..+++||+|...+. -+++|...
T Consensus 2 ~G~Vkwfn~~KGfG-FI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~-~g~kG~~A 60 (74)
T 2kcm_A 2 KGKVVSYLAAKKYG-FIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPT-PTPKGLAA 60 (74)
T ss_dssp EEEEEEEETTTTEE-EEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEE-CTTTSCEE
T ss_pred CEEEEEEECCCCEE-EEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEE-ECCCCcee
Confidence 69999984 356 556666788999999885 3 46899999999885 35566443
No 234
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.99 E-value=49 Score=28.34 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=38.8
Q ss_pred CEEEEEEEEE-eCCeEEEEeCCC--eEEEEecccCCC-CCCCCCCEEEEEEEEEeCCCc
Q 002054 912 TKVAAKVYQV-RARGLVLDLGGG--IRGMYRFENNEK-KDFVVGDELLVKCSSFTGKGI 966 (974)
Q Consensus 912 ~vV~G~V~~I-~~~GvFV~L~~g--v~Glih~se~~~-~~f~vGd~V~vkVl~id~~~~ 966 (974)
+...|+|+.+ +-|| ||.-++| -+=|+|++.+.. ..+++||+|...+..=+.+|.
T Consensus 7 ~~~~G~V~~~~KGfG-FI~~ddg~g~DvFvH~s~i~~g~~l~~G~~V~F~v~~~~k~G~ 64 (79)
T 2ytv_A 7 GLRRATVECVKDQFG-FINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGK 64 (79)
T ss_dssp SBCCEEEEECCSSEE-EESCCCSSSSSEEEETTTCCSSCCCCTTCEEECBCEECSSSCC
T ss_pred CcccEEEEEecccce-eEeCCCCCCCcEEEEhHHcCCCCcCCCCCEEEEEEEECCCCCC
Confidence 4567889888 4555 4555544 789999998852 479999999999875443355
No 235
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=26.05 E-value=75 Score=29.35 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=41.6
Q ss_pred cccCcEEEEEEEEEeeceE-EEEEcCCeEEEEecccCCCccccccccccccCCEEEEEEEEEcc-CCceEE
Q 002054 681 IEVGGIYKGVVTSVKEYGA-FVEFNGGQQGLLHVSELSHEPVSRVSDVVSVGQQLSLRCIGQDV-RGNIKL 749 (974)
Q Consensus 681 ~~~G~i~~G~V~~i~~~G~-fV~l~~g~~Glvhisels~~~v~~~~~~~~vGd~V~vkVl~id~-~gri~L 749 (974)
++.|+. .|+|++....|. .|++.+|..-++|++- .+.. .-...+||.|.+.+...|. +|.|..
T Consensus 29 ~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l~~i~G----K~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~ 93 (117)
T 2oqk_A 29 KEEGQE-YGQVQRMLGNGRLDAYCFDGQKRLCHIRG----KMRK-KVWVNPGDIVLVSLRDFQDSKGDIIL 93 (117)
T ss_dssp CCTTEE-EEEEEEEEETTEEEEEETTSCEEEEECCH----HHHH-HSCCCTTCEEEEEECTTCTTEEEEEE
T ss_pred CCCCEE-EEEEEEEcCCCEEEEEeCCCCEEEEEEcC----ceec-CCcCCCCCEEEEEEEcCCCCeEEEEE
Confidence 456665 699999999555 5778888888888763 2333 3335689999987653222 455543
No 236
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=25.21 E-value=1.7e+02 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.009 Sum_probs=41.1
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCC-------------CCCCCCCCEEEEE
Q 002054 909 KLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNE-------------KKDFVVGDELLVK 957 (974)
Q Consensus 909 ~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~-------------~~~f~vGd~V~vk 957 (974)
..|+.+.+.|.++.+.++-|.+.+|-.+.++.+.+. .+.+++||.|.|+
T Consensus 32 ~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 32 NSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 458999999999999999999988888888887552 1238999999998
No 237
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.44 E-value=1.8e+02 Score=25.51 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=37.7
Q ss_pred EEEEEEEEEe---CCeEEEE-------eCCCeEEEEecccCCC---CCCCCCCEEEEEEEEEeCCCce
Q 002054 913 KVAAKVYQVR---ARGLVLD-------LGGGIRGMYRFENNEK---KDFVVGDELLVKCSSFTGKGIP 967 (974)
Q Consensus 913 vV~G~V~~I~---~~GvFV~-------L~~gv~Glih~se~~~---~~f~vGd~V~vkVl~id~~~~~ 967 (974)
..+|+|+-.. -||.... .+++-+=|+|+|.+.. +.+.+||.|...|.. .++|..
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~L~eG~~V~f~v~~-g~kG~~ 74 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKK-SSKGFE 74 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCCCCTTCEEEEEEEE-ETTEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCccCCCCEEEEEEEE-CCCCcE
Confidence 5689999883 4565532 2346788999997743 357899999998865 344443
No 238
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=29.62 E-value=17 Score=30.51 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=36.4
Q ss_pred CEEEEEEEEE---eCCeEEEEeCCCeEEEEecccCCC---CCCCCCCEEEEEEEEE
Q 002054 912 TKVAAKVYQV---RARGLVLDLGGGIRGMYRFENNEK---KDFVVGDELLVKCSSF 961 (974)
Q Consensus 912 ~vV~G~V~~I---~~~GvFV~L~~gv~Glih~se~~~---~~f~vGd~V~vkVl~i 961 (974)
+.++|+|+.. +-||..-.-+++-+=|+|+|.+.. ..+.+||+|+..+..-
T Consensus 3 ~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 58 (70)
T 2lss_A 3 TNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEK 58 (70)
Confidence 3578999987 347755443336889999998853 3588999999987544
No 239
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=22.47 E-value=29 Score=30.58 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=37.5
Q ss_pred CEEEEEEEEE-eCCeEEEEeCC-CeEEEEecccCC-CCCCCCCCEEEEEEEEEe
Q 002054 912 TKVAAKVYQV-RARGLVLDLGG-GIRGMYRFENNE-KKDFVVGDELLVKCSSFT 962 (974)
Q Consensus 912 ~vV~G~V~~I-~~~GvFV~L~~-gv~Glih~se~~-~~~f~vGd~V~vkVl~id 962 (974)
+..+|+|+.. +-|| ||.-++ +-+=|+|+|.+. ...+++||+|+..|..=+
T Consensus 7 ~r~~G~Vk~f~KGfG-FI~~~~gg~DvFvH~s~i~~~~~L~~G~~V~F~v~~g~ 59 (89)
T 1x65_A 7 GREMGVIAAMRDGFG-FIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDM 59 (89)
T ss_dssp CCEEEEEEECCTTBC-EEEESSSSSCCCCBTTGGGGSCCCCTTCCEEECCBCCS
T ss_pred cceeEEEEEEeCCcc-eeecCCCCccEEEEhhhccCCCCCCCCCEEEEEEEeCC
Confidence 4578999988 4556 555554 678899999774 267999999999886544
No 240
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=22.02 E-value=2.6e+02 Score=22.70 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=33.9
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEecccCCCCCCCCCCEEEEEEEEEeC
Q 002054 908 LKLGTKVAAKVYQVRARGLVLDLGGGIRGMYRFENNEKKDFVVGDELLVKCSSFTG 963 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~GvFV~L~~gv~Glih~se~~~~~f~vGd~V~vkVl~id~ 963 (974)
++.|+.++.+|.++..-|-=|---+|..=|++. --+||+|.++|.....
T Consensus 11 ~~~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~-------alPGE~V~v~i~k~kk 59 (68)
T 1yez_A 11 VEEGEVYDVTIQDIARQGDGIARIEGFVIFVPG-------TKVGDEVRIKVERVLP 59 (68)
T ss_dssp CCTTEEEEEECCEEETTTEEEEEETTEEEEEES-------CCTTCEEEEEEEEECS
T ss_pred cCCCCEEEEEEEEcCCCccEEEEECCEEEECcC-------CCCCCEEEEEEEEecC
Confidence 578888888888886665544333454455553 2489999999998754
No 241
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=21.65 E-value=2.4e+02 Score=22.75 Aligned_cols=36 Identities=6% Similarity=0.024 Sum_probs=30.7
Q ss_pred CCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEecccC
Q 002054 908 LKLGTKVAAKVYQVRAR--GLVLDLGGGIRGMYRFENN 943 (974)
Q Consensus 908 ~~vG~vV~G~V~~I~~~--GvFV~L~~gv~Glih~se~ 943 (974)
-+=|.-.-|+|.+|... -.+|.++++-.-.++..++
T Consensus 14 wsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi 51 (58)
T 4hcz_A 14 WTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDI 51 (58)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGE
T ss_pred ecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHc
Confidence 45688999999999777 5999999998888888765
No 242
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=21.13 E-value=1.5e+02 Score=23.85 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=30.3
Q ss_pred ccCcEEEEEEEEEeec--eEEEEEcCCeEEEEecccCC
Q 002054 682 EVGGIYKGVVTSVKEY--GAFVEFNGGQQGLLHVSELS 717 (974)
Q Consensus 682 ~~G~i~~G~V~~i~~~--G~fV~l~~g~~Glvhisels 717 (974)
.-|.-|-|+|++|... -++|.+..+.+-.++-.+|.
T Consensus 15 sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 15 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 4588899999999887 58999999988888877764
Done!