Query 002055
Match_columns 974
No_of_seqs 952 out of 5783
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 15:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-71 4E-76 703.9 47.7 583 39-893 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-56 2.2E-61 569.4 40.4 515 221-891 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1E-37 2.3E-42 318.1 -7.5 488 222-867 46-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 2.2E-37 4.7E-42 315.8 -12.3 478 112-723 58-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 4.7E-35 1E-39 311.5 4.7 369 123-502 79-449 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.6E-35 7.9E-40 312.3 3.5 369 83-479 79-450 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.5E-35 5.4E-40 330.6 -0.3 460 223-865 23-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.8E-33 3.9E-38 315.8 -4.8 454 111-674 10-465 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1E-31 2.2E-36 287.3 3.6 394 294-872 7-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.3E-31 9.4E-36 282.6 -2.9 369 119-650 4-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 4.6E-25 1E-29 226.0 -4.6 417 368-864 64-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 9.9E-22 2.2E-26 249.4 22.9 207 491-730 610-822 (1153)
13 KOG4237 Extracellular matrix p 99.9 1E-23 2.2E-28 216.2 -1.7 289 148-480 68-358 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1E-21 2.2E-26 230.2 14.1 261 494-872 203-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.5E-26 229.8 14.0 256 544-893 205-461 (788)
16 PLN03210 Resistant to P. syrin 99.9 3.2E-20 6.9E-25 235.7 26.5 177 266-456 554-737 (1153)
17 PRK15370 E3 ubiquitin-protein 99.8 5E-19 1.1E-23 209.5 16.4 285 36-356 58-381 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.3E-19 4.9E-24 212.4 12.3 244 544-868 182-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 8.3E-19 1.8E-23 194.0 0.3 259 563-865 25-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.8E-17 3.9E-22 183.2 4.9 144 314-457 77-234 (319)
21 KOG0617 Ras suppressor protein 99.6 4.9E-17 1.1E-21 148.3 0.8 143 588-736 32-175 (264)
22 PLN03150 hypothetical protein; 99.6 1.5E-15 3.2E-20 180.0 11.1 116 784-899 420-538 (623)
23 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.5E-22 148.9 -3.7 184 610-872 30-217 (264)
24 PLN03150 hypothetical protein; 99.4 6.2E-13 1.3E-17 157.8 12.0 149 37-205 368-525 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 148.9 -2.1 194 613-865 75-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 8.5E-13 1.8E-17 142.7 -3.5 188 594-840 80-270 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2.7E-11 5.8E-16 137.9 7.6 84 785-872 212-295 (394)
28 COG4886 Leucine-rich repeat (L 99.1 5.4E-11 1.2E-15 135.4 6.5 182 613-851 116-298 (394)
29 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.9E-16 129.8 1.3 164 119-283 118-284 (505)
30 KOG1909 Ran GTPase-activating 99.1 3.4E-11 7.3E-16 123.6 1.9 232 112-357 20-285 (382)
31 KOG1909 Ran GTPase-activating 99.1 2.2E-11 4.8E-16 124.9 0.5 249 81-355 29-311 (382)
32 KOG3207 Beta-tubulin folding c 99.0 3.5E-11 7.5E-16 126.7 0.6 164 168-331 118-284 (505)
33 PF14580 LRR_9: Leucine-rich r 99.0 5.8E-11 1.3E-15 115.1 2.0 129 119-277 16-147 (175)
34 KOG1259 Nischarin, modulator o 99.0 2.6E-10 5.6E-15 114.0 3.5 205 112-331 204-412 (490)
35 PF14580 LRR_9: Leucine-rich r 98.9 2.4E-09 5.3E-14 103.8 6.2 106 245-356 19-127 (175)
36 KOG0531 Protein phosphatase 1, 98.8 4.8E-10 1E-14 127.7 -1.9 218 120-355 70-290 (414)
37 KOG1259 Nischarin, modulator o 98.8 1.7E-09 3.8E-14 108.1 1.4 132 269-435 283-415 (490)
38 PF08263 LRRNT_2: Leucine rich 98.7 1.1E-08 2.3E-13 74.3 4.2 39 40-78 2-43 (43)
39 PF13855 LRR_8: Leucine rich r 98.7 9E-09 2E-13 81.9 3.8 60 807-866 2-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.7 9.2E-09 2E-13 124.8 4.1 235 112-353 560-805 (889)
41 PF13855 LRR_8: Leucine rich r 98.7 2.6E-08 5.6E-13 79.3 4.4 60 783-842 2-61 (61)
42 KOG0531 Protein phosphatase 1, 98.6 5.8E-09 1.2E-13 118.8 0.4 232 111-358 84-321 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 8E-10 1.7E-14 110.6 -7.2 199 123-345 186-390 (419)
44 KOG4658 Apoptotic ATPase [Sign 98.6 4.9E-08 1.1E-12 118.6 5.2 105 148-255 546-652 (889)
45 KOG2982 Uncharacterized conser 98.5 3.1E-08 6.8E-13 99.5 1.8 113 170-282 44-158 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 2.2E-08 4.7E-13 100.6 -4.0 157 196-353 186-349 (419)
47 KOG1859 Leucine-rich repeat pr 98.3 8.6E-09 1.9E-13 115.0 -8.4 180 115-307 102-292 (1096)
48 KOG1859 Leucine-rich repeat pr 98.2 3.5E-07 7.5E-12 102.5 1.0 110 584-699 182-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.2 9.9E-08 2.2E-12 85.0 -3.2 85 785-872 80-164 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.0 3.5E-06 7.7E-11 83.9 3.7 192 118-332 26-256 (388)
51 KOG4579 Leucine-rich repeat (L 98.0 4.2E-07 9E-12 81.1 -3.1 109 196-307 28-136 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.0 5.3E-06 1.2E-10 82.7 3.6 39 167-205 26-68 (388)
53 KOG2982 Uncharacterized conser 97.9 2.3E-06 4.9E-11 86.4 0.7 213 317-556 44-265 (418)
54 PRK15386 type III secretion pr 97.9 4.9E-05 1.1E-09 83.0 9.2 57 609-671 48-104 (426)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.1E-05 2.3E-10 58.7 2.4 36 807-843 2-37 (44)
56 KOG1644 U2-associated snRNP A' 97.8 3.4E-05 7.4E-10 74.1 5.4 106 147-255 42-150 (233)
57 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 5.1E-10 56.9 2.5 37 830-867 1-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 3.1E-10 95.0 1.9 112 146-284 147-264 (699)
59 PRK15386 type III secretion pr 97.6 0.00016 3.4E-09 79.2 8.1 121 584-723 47-169 (426)
60 KOG1644 U2-associated snRNP A' 97.6 7.6E-05 1.6E-09 71.7 4.9 62 220-281 63-124 (233)
61 KOG4341 F-box protein containi 97.6 2E-06 4.4E-11 90.9 -6.6 285 122-430 138-437 (483)
62 KOG2739 Leucine-rich acidic nu 97.5 5.4E-05 1.2E-09 76.1 2.6 118 111-231 32-153 (260)
63 KOG4341 F-box protein containi 97.5 1.5E-05 3.2E-10 84.6 -2.0 280 147-453 138-435 (483)
64 KOG3665 ZYG-1-like serine/thre 97.4 7.1E-05 1.5E-09 89.1 3.0 17 341-357 249-265 (699)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00043 9.3E-09 69.8 0.7 69 139-209 35-105 (260)
66 PF13306 LRR_5: Leucine rich r 96.6 0.0038 8.2E-08 58.2 5.7 35 167-202 8-42 (129)
67 PF13306 LRR_5: Leucine rich r 96.5 0.0048 1E-07 57.5 5.6 82 118-203 8-89 (129)
68 KOG2123 Uncharacterized conser 96.3 0.00027 5.8E-09 71.2 -4.2 86 121-236 18-103 (388)
69 KOG2123 Uncharacterized conser 96.2 0.00018 4E-09 72.3 -5.5 66 218-285 38-103 (388)
70 KOG1947 Leucine rich repeat pr 96.2 0.00086 1.9E-08 78.7 -1.3 112 146-257 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0038 8.2E-08 37.7 1.6 19 808-827 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 96.0 0.0028 6.2E-08 38.2 0.9 21 831-852 1-21 (22)
73 KOG1947 Leucine rich repeat pr 95.9 0.00085 1.8E-08 78.8 -3.6 133 194-326 187-329 (482)
74 KOG4308 LRR-containing protein 94.4 0.00085 1.9E-08 76.6 -9.0 39 395-433 262-304 (478)
75 KOG4308 LRR-containing protein 94.0 0.001 2.3E-08 75.8 -9.3 185 519-724 89-304 (478)
76 KOG0473 Leucine-rich repeat pr 91.2 0.01 2.2E-07 58.6 -5.3 83 782-867 42-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.5 0.14 3E-06 28.6 1.0 11 808-818 3-13 (17)
78 PF13504 LRR_7: Leucine rich r 90.3 0.16 3.4E-06 28.4 1.1 14 830-843 1-14 (17)
79 KOG3864 Uncharacterized conser 88.2 0.08 1.7E-06 51.6 -1.7 81 173-253 103-184 (221)
80 smart00369 LRR_TYP Leucine-ric 86.3 0.55 1.2E-05 29.5 1.8 15 829-843 1-15 (26)
81 smart00370 LRR Leucine-rich re 86.3 0.55 1.2E-05 29.5 1.8 15 829-843 1-15 (26)
82 smart00370 LRR Leucine-rich re 85.5 0.67 1.5E-05 29.1 2.0 20 171-190 2-21 (26)
83 smart00369 LRR_TYP Leucine-ric 85.5 0.67 1.5E-05 29.1 2.0 20 171-190 2-21 (26)
84 PF13516 LRR_6: Leucine Rich r 84.3 0.24 5.2E-06 30.5 -0.5 16 830-845 2-17 (24)
85 PF13516 LRR_6: Leucine Rich r 82.9 0.24 5.1E-06 30.5 -0.9 19 806-824 2-20 (24)
86 KOG4242 Predicted myosin-I-bin 79.1 13 0.00028 41.5 9.8 67 292-360 163-232 (553)
87 KOG0473 Leucine-rich repeat pr 78.3 0.039 8.5E-07 54.6 -8.4 59 293-353 64-122 (326)
88 KOG3864 Uncharacterized conser 75.5 0.65 1.4E-05 45.5 -0.9 83 319-428 102-185 (221)
89 smart00365 LRR_SD22 Leucine-ri 70.5 3.4 7.3E-05 26.0 1.7 15 829-843 1-15 (26)
90 smart00364 LRR_BAC Leucine-ric 63.6 4.2 9E-05 25.6 1.1 12 808-819 4-15 (26)
91 smart00368 LRR_RI Leucine rich 56.9 8 0.00017 24.8 1.6 14 830-843 2-15 (28)
92 KOG3763 mRNA export factor TAP 54.4 7.2 0.00016 44.4 1.8 63 219-284 216-284 (585)
93 KOG4242 Predicted myosin-I-bin 45.6 2.3E+02 0.0049 32.2 11.3 20 147-166 165-184 (553)
94 KOG3763 mRNA export factor TAP 35.1 21 0.00047 40.7 1.8 14 221-234 270-283 (585)
95 PF04478 Mid2: Mid2 like cell 34.9 30 0.00066 32.4 2.4 13 957-969 81-93 (154)
96 PTZ00382 Variant-specific surf 25.4 42 0.00091 29.1 1.6 6 928-933 69-74 (96)
97 smart00367 LRR_CC Leucine-rich 25.1 51 0.0011 20.5 1.5 11 147-157 2-12 (26)
98 TIGR00864 PCC polycystin catio 24.3 39 0.00083 46.6 1.6 32 812-843 1-32 (2740)
99 PRK00523 hypothetical protein; 22.9 34 0.00074 27.5 0.5 21 937-957 15-35 (72)
100 PF01102 Glycophorin_A: Glycop 21.4 37 0.00081 30.8 0.5 18 927-944 66-83 (122)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-71 Score=703.94 Aligned_cols=583 Identities=35% Similarity=0.564 Sum_probs=406.8
Q ss_pred CHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCceEEEEcCCCCccccCCCccccCCCccccccccCcC
Q 002055 39 LESEREALLRFKQDLQDPSYRLASWIGNRDCCAWAGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSL 118 (974)
Q Consensus 39 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 118 (974)
+++|+.||++||+++.+|.+.+.+|+.+.+||.|+||+|+. .++|+.|+|+++ .+.|.+++.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~----------------~i~~~~~~~~ 89 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK----------------NISGKISSAI 89 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC----------------CccccCChHH
Confidence 35899999999999988887889998788999999999985 679999999983 6777888888
Q ss_pred cCCCCCCEEECCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCC
Q 002055 119 LDLKHLSYLDLSFNDFQGVPIPRFIG-SMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFL 197 (974)
Q Consensus 119 ~~l~~L~~L~Ls~n~i~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 197 (974)
..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|++++.+|. +.+++|++|++++|.
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--------------- 151 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--------------- 151 (968)
T ss_pred hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc---------------
Confidence 8889999999998888764 676544 788888888888888776664 234444444444443
Q ss_pred CeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEc
Q 002055 198 EHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNL 277 (974)
Q Consensus 198 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 277 (974)
+++..+..++++++|++|++++|.+.+.. |..+.++++|++|++
T Consensus 152 -----------------------------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L 195 (968)
T PLN00113 152 -----------------------------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTL 195 (968)
T ss_pred -----------------------------------ccccCChHHhcCCCCCEEECccCcccccC-ChhhhhCcCCCeeec
Confidence 33333334455555555555555555443 555566666666666
Q ss_pred cCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCc
Q 002055 278 GYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQE 357 (974)
Q Consensus 278 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 357 (974)
++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|+.|++++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 66666655666666666666666666666666666666666666666666666666666666666666665555555443
Q ss_pred chhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceech
Q 002055 358 ISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSE 437 (974)
Q Consensus 358 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~ 437 (974)
+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|.
T Consensus 276 -----------------------------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 276 -----------------------------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred -----------------------------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 333455566666677776666666666666677777777776666544432
Q ss_pred hhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcC
Q 002055 438 IHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS 517 (974)
Q Consensus 438 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~ 517 (974)
.+. .+++|+.|++++|.+.+.+|..+
T Consensus 327 -~~~------------------------------------------------~l~~L~~L~L~~n~l~~~~p~~l----- 352 (968)
T PLN00113 327 -ALT------------------------------------------------SLPRLQVLQLWSNKFSGEIPKNL----- 352 (968)
T ss_pred -hHh------------------------------------------------cCCCCCEEECcCCCCcCcCChHH-----
Confidence 122 22223333333333332222211
Q ss_pred cCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccc
Q 002055 518 QLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLD 597 (974)
Q Consensus 518 ~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls 597 (974)
+.+++|+.|+++
T Consensus 353 --------------------------------------------------------------------~~~~~L~~L~Ls 364 (968)
T PLN00113 353 --------------------------------------------------------------------GKHNNLTVLDLS 364 (968)
T ss_pred --------------------------------------------------------------------hCCCCCcEEECC
Confidence 112233344444
Q ss_pred cccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccC
Q 002055 598 RNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNI 677 (974)
Q Consensus 598 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 677 (974)
+|.+++.+|..+..+++|+.|++++|++.+.+|..++.+++|+.|++++|++++.+|..+.++++|+.|++++|++++.+
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 44444444444555555555555555555555555555566666666666666555655666666666666666666655
Q ss_pred chhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccc
Q 002055 678 PSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTY 757 (974)
Q Consensus 678 p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 757 (974)
|..+. .+++|+.|++++|++.+.+|..+ ..++|+.||+++|+++|.+|..+.++++|
T Consensus 445 ~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L--------------------- 501 (968)
T PLN00113 445 NSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL--------------------- 501 (968)
T ss_pred Chhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc---------------------
Confidence 55544 45566666666666666666544 34789999999999999999887766655
Q ss_pred cccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEEC
Q 002055 758 ALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDF 837 (974)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL 837 (974)
+.|||++|+++|.+|..++++++|++|+|++|+++|.+|..++.+++|+.|||
T Consensus 502 ---------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 502 ---------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ---------------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccccCCC-CCCCCC
Q 002055 838 SVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAP 893 (974)
Q Consensus 838 s~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n-~lcg~~ 893 (974)
++|+++|.+|..+.++++|++|++++|+++|.||..+++.++..++|.|| .+||.+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999 899865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-56 Score=569.43 Aligned_cols=515 Identities=34% Similarity=0.530 Sum_probs=395.3
Q ss_pred CCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhc-CCCCCcEEEccCcccccCCCcccCCCCCCCEE
Q 002055 221 PSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVF-GLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHL 299 (974)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 299 (974)
.+++.|++++|.+++..+..+..+++|++|++++|++++.+ |..+. .+++|++|++++|++++.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i-p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI-PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC-ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 45677777777777776777777888888888888777665 54443 777888888888887776664 456778888
Q ss_pred EcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCC
Q 002055 300 DLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLP 379 (974)
Q Consensus 300 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 379 (974)
++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .++.++. |+.|+++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~-L~~L~L~ 220 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKS-LKWIYLG 220 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCC-ccEEECc
Confidence 8888887777777778888888888888887777777777777777777777777666655 4444444 5555555
Q ss_pred CCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCcccccc
Q 002055 380 NSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLK 459 (974)
Q Consensus 380 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~ 459 (974)
+|.+.+.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|++.+.+|
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----------------------- 277 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP----------------------- 277 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----------------------
Confidence 555555555555555555555555555555555555555555555555555544333
Q ss_pred ccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccc
Q 002055 460 VRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKA 539 (974)
Q Consensus 460 ~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~ 539 (974)
..+..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.
T Consensus 278 --------------------------~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~------- 323 (968)
T PLN00113 278 --------------------------PSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGK------- 323 (968)
T ss_pred --------------------------hhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCc-------
Confidence 334445555556666665555555432 2233333333333333222
Q ss_pred cccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeee
Q 002055 540 SQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLD 619 (974)
Q Consensus 540 ~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 619 (974)
+| ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 324 -------------------------------------~~----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 324 -------------------------------------IP----VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred -------------------------------------CC----hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 11 1233466788888888888888999999999999999
Q ss_pred CCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccc
Q 002055 620 LSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFH 699 (974)
Q Consensus 620 Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~ 699 (974)
+++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .++.|+.|++++|.++
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQ 441 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887 6899999999999999
Q ss_pred cccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhh
Q 002055 700 GLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSE 779 (974)
Q Consensus 700 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (974)
+.+|..+..+++|+.|++++|++.|.+|..++.
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~----------------------------------------------- 474 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS----------------------------------------------- 474 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCccccc-----------------------------------------------
Confidence 999999999999999999999999988865421
Q ss_pred ccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCee
Q 002055 780 ILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHL 859 (974)
Q Consensus 780 ~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L 859 (974)
..|+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|+.++++++|++|||++|.++|.+|..++.+++|++|
T Consensus 475 --~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 475 --KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred --ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 234789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCeeeecCCCC-cccCcccccccCCCCCCC
Q 002055 860 NLSNNYLTGKIPSS-TQLQSFNASCFLGNNLCG 891 (974)
Q Consensus 860 ~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~lcg 891 (974)
|+++|+++|.+|.. ..+..+......+|.+.|
T Consensus 553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999974 334445555567775554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=318.12 Aligned_cols=488 Identities=26% Similarity=0.365 Sum_probs=299.3
Q ss_pred CCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEc
Q 002055 222 SLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDL 301 (974)
Q Consensus 222 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 301 (974)
.|+.+.+++|.++...+ .+.++..|.+|++++|++.. .|..++.+..++.++.++|++. .+|+.++.+.+|+.++.
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccH-hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 45555566665555443 45566677777777777654 4677777777777777777777 56777777777777777
Q ss_pred CCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCC
Q 002055 302 SFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNS 381 (974)
Q Consensus 302 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 381 (974)
++|.+. .+|+.++.+-.|+.++..+|+++ ..|+.+..+.+|..+++.+|++....|. .+. +.. |++|+...|
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~-m~~-L~~ld~~~N 193 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN----HIA-MKR-LKHLDCNSN 193 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH----HHH-HHH-HHhcccchh
Confidence 777776 45666777777777777777777 5666777777777777777776654444 111 222 333333333
Q ss_pred CCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCcccccccc
Q 002055 382 SIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVR 461 (974)
Q Consensus 382 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 461 (974)
-+ +.+|+.++.+.+|..|++..|++... | .|.+|..|++++++.|.+. .+|.....
T Consensus 194 ~L-~tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~-------------------- 249 (565)
T KOG0472|consen 194 LL-ETLPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIE-MLPAEHLK-------------------- 249 (565)
T ss_pred hh-hcCChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHH-hhHHHHhc--------------------
Confidence 22 23344444445555555555555433 2 3444445555555444443 33333333
Q ss_pred CCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccc
Q 002055 462 RDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQ 541 (974)
Q Consensus 462 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~ 541 (974)
++.++..||+.+|+++ +.|+.+. .+.+|++||+|+|.+++..++++++ +
T Consensus 250 ----------------------------~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 250 ----------------------------HLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-H 298 (565)
T ss_pred ----------------------------ccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccccCCcccccc-e
Confidence 4445555555555555 5666553 3567778888888887777777777 6
Q ss_pred cceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCC---cccccccccccccccCCcccccC--CCCC
Q 002055 542 LSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGM---KLQFLFLDRNILQGNLPDCWMSY--QNLM 616 (974)
Q Consensus 542 L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~---~L~~L~Ls~n~l~~~~p~~l~~l--~~L~ 616 (974)
|+.|-+.+|.+...-.. +-.+. -|++|.= .+.. +.+..- .+-.
T Consensus 299 L~~L~leGNPlrTiRr~--------------------------ii~~gT~~vLKyLrs---~~~~---dglS~se~~~e~ 346 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRRE--------------------------IISKGTQEVLKYLRS---KIKD---DGLSQSEGGTET 346 (565)
T ss_pred eeehhhcCCchHHHHHH--------------------------HHcccHHHHHHHHHH---hhcc---CCCCCCcccccc
Confidence 77777777655321000 00000 0122110 0000 000000 0000
Q ss_pred eeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCC---CCCeEeccCCcccccCchhHHhhhhhhhhhhc
Q 002055 617 MLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCT---SLMTLDVGENEFFGNIPSWFGEMFSIMVFLIL 693 (974)
Q Consensus 617 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L 693 (974)
.-+ ...+..|+ .....+.+.|++++-+++ .+|.....-. -....+++.|++ ..+|..+. .+..+....+
T Consensus 347 ~~t----~~~~~~~~-~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~-~lkelvT~l~ 418 (565)
T KOG0472|consen 347 AMT----LPSESFPD-IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLV-ELKELVTDLV 418 (565)
T ss_pred cCC----CCCCcccc-hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchH-hhhhhhhH-HHHHHHHHHH
Confidence 000 00111222 123456677777777776 4454433222 266778888887 56777766 3444444444
Q ss_pred cCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecc
Q 002055 694 RSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGV 773 (974)
Q Consensus 694 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (974)
..|+..+.+|..++.+++|..|+|++|.+. .+|..++.+..|
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L------------------------------------- 460 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL------------------------------------- 460 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-------------------------------------
Confidence 444444677888888999999999988776 788777665544
Q ss_pred cchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCC
Q 002055 774 AADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSL 853 (974)
Q Consensus 774 ~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l 853 (974)
+.||+|+|+|. .+|..+..+..++.+-.++|++...-|+.+++|.+|..|||.+|.+. .||..++++
T Consensus 461 -----------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 461 -----------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred -----------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 78889999887 78888888888888888888888555566999999999999999988 788899999
Q ss_pred CCCCeeecccCeee
Q 002055 854 TFLNHLNLSNNYLT 867 (974)
Q Consensus 854 ~~L~~L~ls~N~l~ 867 (974)
++|++|++++|++.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 99999999999887
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-37 Score=315.80 Aligned_cols=478 Identities=28% Similarity=0.349 Sum_probs=267.7
Q ss_pred ccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCcccc
Q 002055 112 GKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWL 191 (974)
Q Consensus 112 ~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l 191 (974)
..+.+.+.++..|.+|++++|++.. +|+.++.+..++.|+.++|+++ .+|+.++.+.+|++|+.++|.+...+.+ +
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~-i 133 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDS-I 133 (565)
T ss_pred hhccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCch-H
Confidence 3444556666666666666666653 5666666666666666666665 4566666666666666666655544332 3
Q ss_pred CCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCC
Q 002055 192 SGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSH 271 (974)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 271 (974)
+.+..|..++..+|+++.. ++ .+..+.+|..+++.+|++... |+..-.++.
T Consensus 134 ~~~~~l~dl~~~~N~i~sl--------------------------p~-~~~~~~~l~~l~~~~n~l~~l--~~~~i~m~~ 184 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSL--------------------------PE-DMVNLSKLSKLDLEGNKLKAL--PENHIAMKR 184 (565)
T ss_pred HHHhhhhhhhccccccccC--------------------------ch-HHHHHHHHHHhhccccchhhC--CHHHHHHHH
Confidence 3333344444444443333 22 233344455555555555432 222223555
Q ss_pred CcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhh-hcCCCCcEEEcc
Q 002055 272 LLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSM-ARLCNLKRLYLS 350 (974)
Q Consensus 272 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~ 350 (974)
|++||...|.+. .+|..++.+.+|+.|++..|++. ..| .|.++..|++|+++.|.+. .+|... .+++++..||+.
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 555555555554 44555566666666666666655 334 4555556666666666555 333333 355555555555
Q ss_pred CCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCc
Q 002055 351 GAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNK 430 (974)
Q Consensus 351 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 430 (974)
+|++.. .|+.+..+.+|.+||+++|.|++. |..++++ .|+.|-+.+|.
T Consensus 261 dNklke------------------------------~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 261 DNKLKE------------------------------VPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccc------------------------------CchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCc
Confidence 555432 444566667777788888877765 6667777 77888888887
Q ss_pred ccceechhhhcCCC--CCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCc
Q 002055 431 LHGTLSEIHFVNLT--KLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTF 508 (974)
Q Consensus 431 l~~~i~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~ 508 (974)
+. .+....+..-+ -|++|.- .+.++....-..- +-..-+ ...+.+| ......+.+.|++++-+++ .+
T Consensus 309 lr-TiRr~ii~~gT~~vLKyLrs---~~~~dglS~se~~-~e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~V 377 (565)
T KOG0472|consen 309 LR-TIRREIISKGTQEVLKYLRS---KIKDDGLSQSEGG-TETAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LV 377 (565)
T ss_pred hH-HHHHHHHcccHHHHHHHHHH---hhccCCCCCCccc-ccccCC----CCCCccc-chhhhhhhhhhcccccccc-cC
Confidence 64 22111111000 0111110 0000000000000 000000 0000111 1233456667777777776 67
Q ss_pred ChhHHhhcC--cCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhh
Q 002055 509 PNRLLKSAS--QLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTIN 586 (974)
Q Consensus 509 p~~~~~~l~--~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 586 (974)
|.+.|.... -....+++.|++... | ..+.
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~el---------------------------------------------P----k~L~ 408 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCEL---------------------------------------------P----KRLV 408 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhh---------------------------------------------h----hhhH
Confidence 777665433 134444444444311 1 1111
Q ss_pred cCCcccc-cccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCe
Q 002055 587 AGMKLQF-LFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMT 665 (974)
Q Consensus 587 ~~~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 665 (974)
.+..+.+ +.+++|.+ +-+|..++.+++|..|+|++|.+. .+|..++.+..|+.|+++.|+|. .+|..+..+..|++
T Consensus 409 ~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLET 485 (565)
T ss_pred HHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHH
Confidence 1222333 44444444 367777888888888888888765 78888888888888888888887 67777777777777
Q ss_pred EeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCC
Q 002055 666 LDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLS 723 (974)
Q Consensus 666 L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (974)
+-.++|++...-|+.+. ++.+|..|+|.+|.+. .+|+.++++++|+.|++++|+|.
T Consensus 486 llas~nqi~~vd~~~l~-nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLK-NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhccccccccChHHhh-hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777887444444465 6788888888888775 67777888888888888888876
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-35 Score=311.52 Aligned_cols=369 Identities=25% Similarity=0.234 Sum_probs=247.4
Q ss_pred CCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecC
Q 002055 123 HLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDF 202 (974)
Q Consensus 123 ~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 202 (974)
.-+.||+++|.+..+ -+.+|.++++|+.+++..|.++ .+|...+...+|++|+|.+|.|+.+..+.++.++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 445677777777765 5566677777777777777766 56665555566777777777777777777777777777777
Q ss_pred ccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCccc
Q 002055 203 SYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNF 282 (974)
Q Consensus 203 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 282 (974)
|.|.++.++.-.+ ..-.++++|+|++|+|+.+....|..+.+|..|.|+.|+++..- +..|..+++|+.|+|..|++
T Consensus 157 SrN~is~i~~~sf--p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 157 SRNLISEIPKPSF--PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhchhhcccCCCC--CCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhhhhccccce
Confidence 7777776644222 22356777777777777777777777777777777777776532 34445577777777777776
Q ss_pred ccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhh
Q 002055 283 HGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEIL 362 (974)
Q Consensus 283 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 362 (974)
.-.---.|..+++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-..++-++++|+.|+++.|.+...-++
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-- 311 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-- 311 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc--
Confidence 633234566777777777777777655556667777777777777777665556667777777777777766554333
Q ss_pred hhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceech--hhh
Q 002055 363 DIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSE--IHF 440 (974)
Q Consensus 363 ~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~--~~~ 440 (974)
.....++ |++|+|+.|.++..-+..|..+..|++|+|++|.+...-...|..+++|++|||++|.++..|.. ..|
T Consensus 312 --~Wsftqk-L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 312 --SWSFTQK-LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred --hhhhccc-ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 2222333 77777777777666666677777777777777777666556666777777777777777666543 345
Q ss_pred cCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCC
Q 002055 441 VNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNS 502 (974)
Q Consensus 441 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n 502 (974)
..+++|+.|.+.+|++......+|..+..|++|++.+|.+...-|..|..+ +|++|.+..-
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 667777777777777776666667777777777777776666666666666 6666655443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-35 Score=312.35 Aligned_cols=369 Identities=25% Similarity=0.294 Sum_probs=328.4
Q ss_pred ceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC
Q 002055 83 HIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGM 162 (974)
Q Consensus 83 ~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 162 (974)
.+..||+++ +.+...-+..|.++++|+.+++.+|.++. +|.+.....+|+.|+|.+|.|+..
T Consensus 79 ~t~~Ldlsn----------------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv 140 (873)
T KOG4194|consen 79 QTQTLDLSN----------------NKLSHIDFEFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSV 140 (873)
T ss_pred ceeeeeccc----------------cccccCcHHHHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccc
Confidence 456677777 35555556678899999999999999996 788888888999999999999988
Q ss_pred CccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCc
Q 002055 163 IPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVA 242 (974)
Q Consensus 163 ~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 242 (974)
-.+++..++.|+.||||.|.|+.++...|..-.++++|+|++|+|+++....+ ..+.+|..|.|++|+++.++...|.
T Consensus 141 ~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNrittLp~r~Fk 218 (873)
T KOG4194|consen 141 TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNRITTLPQRSFK 218 (873)
T ss_pred cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCcccccCHHHhh
Confidence 88899999999999999999999999999999999999999999999866544 5577999999999999999999999
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCE
Q 002055 243 NFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEH 322 (974)
Q Consensus 243 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 322 (974)
++++|+.|+|..|++.-.- -..|.++++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-..++.+++.|+.
T Consensus 219 ~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hcchhhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 9999999999999987432 345789999999999999999777778999999999999999999888889999999999
Q ss_pred EECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEec
Q 002055 323 LSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDL 402 (974)
Q Consensus 323 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 402 (974)
|++++|.|...-++.+...++|++|+|+.|+++...+. .+..+.. |++|+|+.|.+...--..|..+++|+.|||
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~----sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG----SFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChh----HHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 99999999988899999999999999999999887666 5555666 999999999998777777889999999999
Q ss_pred cCccCCCCcc---cccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCC
Q 002055 403 SNNSIVGLVP---QSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCN 479 (974)
Q Consensus 403 ~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 479 (974)
++|.++..+. ..|..+++|+.|++.+|++. .|+..+|.+++.|+.|++.+|.+....+.+|.++ .|++|.+..-.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 9999875543 35778999999999999997 7888899999999999999999999999999988 89888876544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=330.64 Aligned_cols=460 Identities=29% Similarity=0.361 Sum_probs=326.5
Q ss_pred CcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcC
Q 002055 223 LVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLS 302 (974)
Q Consensus 223 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 302 (974)
++.|+++.|.+-..+.....+.-+|+.||+++|++.. +|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 5556666665555444344445557788888887765 4677777888888888888777 566777788888888888
Q ss_pred CCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCC
Q 002055 303 FNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSS 382 (974)
Q Consensus 303 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 382 (974)
+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..++.++.+..++|......+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~---------------------- 155 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ---------------------- 155 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc----------------------
Confidence 88876 67888888888888888888877 6777777788777777777722211111
Q ss_pred CcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccC
Q 002055 383 IFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRR 462 (974)
Q Consensus 383 ~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 462 (974)
..++.+++..|.+.+.++..+..++. .|+|++|.+. .. .+.++.+|+.+....|++..
T Consensus 156 ------------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~---- 213 (1081)
T KOG0618|consen 156 ------------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSE---- 213 (1081)
T ss_pred ------------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccce----
Confidence 11445555555555555555544444 4666666554 11 23344444444444333220
Q ss_pred CCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecccccccccccccccccc
Q 002055 463 DWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQL 542 (974)
Q Consensus 463 ~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L 542 (974)
+++ ..++++.|+.++|.++
T Consensus 214 ----------------------------------l~~---------------~g~~l~~L~a~~n~l~------------ 232 (1081)
T KOG0618|consen 214 ----------------------------------LEI---------------SGPSLTALYADHNPLT------------ 232 (1081)
T ss_pred ----------------------------------EEe---------------cCcchheeeeccCcce------------
Confidence 000 0123344444444333
Q ss_pred ceeeccCccCCCCCCC-CCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCC
Q 002055 543 SFLRLMANNLSGPLPL-ISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLS 621 (974)
Q Consensus 543 ~~L~l~~n~l~~~~p~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 621 (974)
...+. .+.+++++++++|++++. +.+++.|.+|+.++..+|+++ .+|..+...++|+.|.+.
T Consensus 233 -----------~~~~~p~p~nl~~~dis~n~l~~l-----p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 233 -----------TLDVHPVPLNLQYLDISHNNLSNL-----PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred -----------eeccccccccceeeecchhhhhcc-----hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 11111 245777788888877752 356778999999999999995 788888889999999999
Q ss_pred CccccccCCccccCCCCccEEEccCCcccccCCcc-cccCC-CCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccc
Q 002055 622 NNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPIS-LKNCT-SLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFH 699 (974)
Q Consensus 622 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~ 699 (974)
.|.+. -+|...+++++|++|+|..|++. ..|+. +.-.. +|+.|..+.|++. ..|..-+...+.|+.|++.+|.++
T Consensus 296 ~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 296 YNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc
Confidence 99987 67777888999999999999998 45543 33333 3788888888884 455444456789999999999999
Q ss_pred cccCccccCCCCCcEEEccCCcCCCCCCh-hhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhh
Q 002055 700 GLLPTKLCDLAFLQILDLADNNLSGTLPN-CIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYS 778 (974)
Q Consensus 700 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (974)
...-+.+.+.++|++|+|++|++. .+|. ++.++..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~------------------------------------------- 408 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEE------------------------------------------- 408 (1081)
T ss_pred ccchhhhccccceeeeeecccccc-cCCHHHHhchHH-------------------------------------------
Confidence 999889999999999999999997 6665 3333333
Q ss_pred hccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCccccc-CCccccCCCCCC
Q 002055 779 EILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGE-IPQSMSSLTFLN 857 (974)
Q Consensus 779 ~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-iP~~l~~l~~L~ 857 (974)
|++|+||+|+++ .+|.++.++..|++|..-+|++. ..| .+.++++|+.+|+|.|+++-. +|..... ++|+
T Consensus 409 -----LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~Lk 479 (1081)
T KOG0618|consen 409 -----LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLK 479 (1081)
T ss_pred -----hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccc
Confidence 378899999998 79999999999999999999998 677 788999999999999999854 4444333 7899
Q ss_pred eeecccCe
Q 002055 858 HLNLSNNY 865 (974)
Q Consensus 858 ~L~ls~N~ 865 (974)
+||+++|.
T Consensus 480 yLdlSGN~ 487 (1081)
T KOG0618|consen 480 YLDLSGNT 487 (1081)
T ss_pred eeeccCCc
Confidence 99999985
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-33 Score=315.82 Aligned_cols=454 Identities=26% Similarity=0.326 Sum_probs=260.4
Q ss_pred cccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccc
Q 002055 111 VGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 111 ~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~ 190 (974)
...||..+..-.+++.|+++.|.+-..+ -+++.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|...+ ..
T Consensus 10 l~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s 86 (1081)
T KOG0618|consen 10 LELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SS 86 (1081)
T ss_pred CcccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hh
Confidence 3456666666667888888888776543 334455555888888888776 56777888888888888888877666 34
Q ss_pred cCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCC
Q 002055 191 LSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLS 270 (974)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 270 (974)
..++.+|++|.|.+|.+...|. .+..+++|+.|+++.|.+.. .|..+..++
T Consensus 87 ~~~~~~l~~lnL~~n~l~~lP~---------------------------~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt 137 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQSLPA---------------------------SISELKNLQYLDLSFNHFGP--IPLVIEVLT 137 (1081)
T ss_pred hhhhhcchhheeccchhhcCch---------------------------hHHhhhcccccccchhccCC--CchhHHhhh
Confidence 5556666666666665555433 34455555566666665543 255555556
Q ss_pred CCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEcc
Q 002055 271 HLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLS 350 (974)
Q Consensus 271 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (974)
.+..+..++|..... ++... ++.+++..|.+.+.++..+..++. .|+|.+|.+. . ..+..+.+|+.|...
T Consensus 138 ~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~ 207 (1081)
T KOG0618|consen 138 AEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCE 207 (1081)
T ss_pred HHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhh
Confidence 666666666521111 11111 566666666666666555555544 5666666654 1 235555666666666
Q ss_pred CCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCc
Q 002055 351 GAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNK 430 (974)
Q Consensus 351 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 430 (974)
.|+++.. .-..+. ++.|+.+.|.++...+. ..-.+|++++++.|++++. |+++..+.+|+.++..+|+
T Consensus 208 rn~ls~l--------~~~g~~-l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 208 RNQLSEL--------EISGPS-LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNR 275 (1081)
T ss_pred hcccceE--------EecCcc-hheeeeccCcceeeccc--cccccceeeecchhhhhcc-hHHHHhcccceEecccchh
Confidence 6655431 112222 66666666666532221 1224678888888888776 5788888888888888888
Q ss_pred ccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcCh
Q 002055 431 LHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPN 510 (974)
Q Consensus 431 l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~ 510 (974)
++ .+|. .+...++|+.+.+..|.+. .+|......+.|++|+|..|++. .+|.
T Consensus 276 l~-~lp~-ri~~~~~L~~l~~~~nel~-------------------------yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 276 LV-ALPL-RISRITSLVSLSAAYNELE-------------------------YIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred HH-hhHH-HHhhhhhHHHHHhhhhhhh-------------------------hCCCcccccceeeeeeehhcccc-ccch
Confidence 75 4444 4556666666666666554 34555666788888888888887 6666
Q ss_pred hHHhhcCc-CceEEecccccccccc-ccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcC
Q 002055 511 RLLKSASQ-LYLLDLGHNQIHGELT-NLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAG 588 (974)
Q Consensus 511 ~~~~~l~~-L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 588 (974)
.++..+.. +..|+.+.|.+..... .-...+.|+.|++.+|.++..... .+.+.
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-------------------------~l~~~ 382 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-------------------------VLVNF 382 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-------------------------hhccc
Confidence 65554443 6777777776653322 222334455555555555543322 12233
Q ss_pred CcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEec
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDV 668 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 668 (974)
++|+.|+|++|++.......+.++..|++|+||+|+++ .+|.++..++.|++|...+|++. ..| .+..+++|+.+|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 44444444444444222233444444444444444444 34444444444444444444444 333 4444444444444
Q ss_pred cCCccc
Q 002055 669 GENEFF 674 (974)
Q Consensus 669 s~N~l~ 674 (974)
|.|.++
T Consensus 460 S~N~L~ 465 (1081)
T KOG0618|consen 460 SCNNLS 465 (1081)
T ss_pred ccchhh
Confidence 444443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1e-31 Score=287.31 Aligned_cols=394 Identities=25% Similarity=0.389 Sum_probs=231.8
Q ss_pred CCCCEEEcCCCCCC-CCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCC
Q 002055 294 TSLKHLDLSFNHFN-SSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNG 372 (974)
Q Consensus 294 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 372 (974)
+-.+-.|+++|.++ +.+|.....+++++.|.|....+. .+|+.++.+.+|++|.+++|++....
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-------------- 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-------------- 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--------------
Confidence 34455666666666 356666666666666666666665 56666777777777666666654311
Q ss_pred CceeeCCCCCCcccccccccCCCCCCEEeccCccCCC-CcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEc
Q 002055 373 LESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVG-LVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLV 451 (974)
Q Consensus 373 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l 451 (974)
..+..++.|+.++++.|++.. -+|..+..+..|+.|||++|++. +.|
T Consensus 72 ----------------GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP--------------- 119 (1255)
T KOG0444|consen 72 ----------------GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVP--------------- 119 (1255)
T ss_pred ----------------hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcc---------------
Confidence 123445666667777666532 24666667777777777777765 222
Q ss_pred CCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccc
Q 002055 452 GENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG 531 (974)
Q Consensus 452 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 531 (974)
..+..-+++-.|+||+|+|. +||..++-++..|-.||+|+|++..
T Consensus 120 ----------------------------------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 120 ----------------------------------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred ----------------------------------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh
Confidence 22334455556666666665 7788888888888888888888876
Q ss_pred cccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCccccccccccccc-ccCCcccc
Q 002055 532 ELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQ-GNLPDCWM 610 (974)
Q Consensus 532 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~ 610 (974)
..|.+..+..|+.|++++|.+.. +....+..+++|++|.+++.+-+ ..+|.++.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~h-------------------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNH-------------------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhH-------------------------HHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 66666665555555555554331 11111122344555555554332 24555555
Q ss_pred cCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhh
Q 002055 611 SYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVF 690 (974)
Q Consensus 611 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~ 690 (974)
++.+|..+|+|.|.+. .+|+++..+++|+.|+|++|+++ .+........+|++|++|+|+
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ------------------ 279 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ------------------ 279 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch------------------
Confidence 5556666666666554 45555555555555555555555 222333334444445555544
Q ss_pred hhccCCccccccCccccCCCCCcEEEccCCcCC-CCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEE
Q 002055 691 LILRSNYFHGLLPTKLCDLAFLQILDLADNNLS-GTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVV 769 (974)
Q Consensus 691 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (974)
++ .+|..++.++.|+.|.+.+|+++ .-||..|+.+.+|
T Consensus 280 -------Lt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L--------------------------------- 318 (1255)
T KOG0444|consen 280 -------LT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL--------------------------------- 318 (1255)
T ss_pred -------hc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---------------------------------
Confidence 43 34555555555555555555544 2356666665555
Q ss_pred EecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCcc
Q 002055 770 MKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQS 849 (974)
Q Consensus 770 ~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~ 849 (974)
+.+..++|.+. .+|+.+..+..|+.|.|++|++- .+|+.+.-|+.|+.|||..|.-.--.|.-
T Consensus 319 ---------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 319 ---------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ---------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 22334455554 67778888888888888888887 67888888888888888888655333322
Q ss_pred ccCCCCCCeeecccC-----eeeecCCC
Q 002055 850 MSSLTFLNHLNLSNN-----YLTGKIPS 872 (974)
Q Consensus 850 l~~l~~L~~L~ls~N-----~l~g~iP~ 872 (974)
=..-+.|+.-|+..- ++.|..|.
T Consensus 382 ~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 382 NDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred chhhhcceeeecceehhhHHhhccCCcc
Confidence 122256666555432 56777664
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.3e-31 Score=282.55 Aligned_cols=369 Identities=28% Similarity=0.406 Sum_probs=223.5
Q ss_pred cCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCC
Q 002055 119 LDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLE 198 (974)
Q Consensus 119 ~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 198 (974)
+-++..|-.|+++|.+++..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++..+..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---------- 72 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---------- 72 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence 346678888999999987778999999999999999888876 678888888888888888777654322
Q ss_pred eecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEcc
Q 002055 199 HLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLG 278 (974)
Q Consensus 199 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 278 (974)
.++.++.|+.+++..|++....+|..+..+..|..|||+
T Consensus 73 -----------------------------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 73 -----------------------------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred -----------------------------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 223334444444455554444455556666666666666
Q ss_pred CcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcc
Q 002055 279 YNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEI 358 (974)
Q Consensus 279 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 358 (974)
+|++. +.|..+..-+++-+|+|++|++.......|.+++.|-.|||++|++. .+|+.+..+..|+.|+|++|++...
T Consensus 112 hNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf- 188 (1255)
T KOG0444|consen 112 HNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF- 188 (1255)
T ss_pred hhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH-
Confidence 66665 45555666666666666666665332233456666666666666665 4555666666666666666655321
Q ss_pred hhhhhhhcccCCC--CCceeeCCCCCC-cccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCccccee
Q 002055 359 SEILDIFSGCVPN--GLESLVLPNSSI-FGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTL 435 (974)
Q Consensus 359 ~~~~~~~~~~~~~--~L~~L~L~~n~~-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i 435 (974)
.+..+|+ +|+.|.+++.+- ...+|.++..+.+|..+|++.|.+... |+.+.++++|+.|+|++|+++. +
T Consensus 189 ------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~ite-L 260 (1255)
T KOG0444|consen 189 ------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITE-L 260 (1255)
T ss_pred ------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceee-e
Confidence 1112221 144444444332 234566677777777777777777643 7777777777777777777752 1
Q ss_pred chhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhh
Q 002055 436 SEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKS 515 (974)
Q Consensus 436 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~ 515 (974)
.. .. ....+|++|++|.|+++ .+|..+
T Consensus 261 ~~-~~------------------------------------------------~~W~~lEtLNlSrNQLt-~LP~av--- 287 (1255)
T KOG0444|consen 261 NM-TE------------------------------------------------GEWENLETLNLSRNQLT-VLPDAV--- 287 (1255)
T ss_pred ec-cH------------------------------------------------HHHhhhhhhccccchhc-cchHHH---
Confidence 11 11 11233444444444444 344333
Q ss_pred cCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccc
Q 002055 516 ASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLF 595 (974)
Q Consensus 516 l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~ 595 (974)
.++++|+.|.+.+|+++ |.| ++..|+++..|+++.
T Consensus 288 ---------------------cKL~kL~kLy~n~NkL~-------------------FeG-----iPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 288 ---------------------CKLTKLTKLYANNNKLT-------------------FEG-----IPSGIGKLIQLEVFH 322 (1255)
T ss_pred ---------------------hhhHHHHHHHhccCccc-------------------ccC-----CccchhhhhhhHHHH
Confidence 23333333333333332 011 113455566677777
Q ss_pred cccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCccc
Q 002055 596 LDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLS 650 (974)
Q Consensus 596 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 650 (974)
.++|.+. .+|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.|++..|.-.
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 7766665 66777777777777777777766 66777777777777777777644
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-25 Score=226.02 Aligned_cols=417 Identities=24% Similarity=0.243 Sum_probs=266.2
Q ss_pred cCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccC-CcccceechhhhcCCCCC
Q 002055 368 CVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYR-NKLHGTLSEIHFVNLTKL 446 (974)
Q Consensus 368 ~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L 446 (974)
.+|..-.+++|..|+++...+.+|+.+++|++|||++|.|+.+.|..|.++++|.+|-+.+ |+|+ .++...|.++.++
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 4566688888888888888888899999999999999999999899999999888777766 7776 7777788889888
Q ss_pred cEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecc
Q 002055 447 SVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGH 526 (974)
Q Consensus 447 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~ 526 (974)
+.|.+.-|++.+...+.+..++.+..|.+.++.+...--..+..+..++.+.+..|.+....- ++.+.. ++..
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn------L~wla~-~~a~ 215 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN------LPWLAD-DLAM 215 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc------cchhhh-HHhh
Confidence 888888888887777777777777777777776665544566677777777776666331100 000000 0000
Q ss_pred ccccccccccccccccceeeccCccCCCCCCCC-CCCCcEE---ECcCCccccccchhhHHhhhcCCccccccccccccc
Q 002055 527 NQIHGELTNLTKASQLSFLRLMANNLSGPLPLI-SSNLIGL---DLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQ 602 (974)
Q Consensus 527 n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~-~~~L~~L---~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 602 (974)
+.+ ..+.........+.+.++...-+.. ..+++.+ -.+.+...+..|. ..+..+++|+.|+|++|+++
T Consensus 216 ~~i-----etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 216 NPI-----ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred chh-----hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH---HHHhhcccceEeccCCCccc
Confidence 000 0111111111111111111111100 0111111 1122222333332 23778999999999999999
Q ss_pred ccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccC-chhH
Q 002055 603 GNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNI-PSWF 681 (974)
Q Consensus 603 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~ 681 (974)
+.-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+-..|.+|..+.+|.+|.+-.|++...- -.|+
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHH
Confidence 999999999999999999999998666778899999999999999999999999999999999999999986542 2344
Q ss_pred HhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCC---CCCChhhcc---------cccccccCCCccCcccc
Q 002055 682 GEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLS---GTLPNCIHN---------LTAMATVNPFTGNAIKY 749 (974)
Q Consensus 682 ~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~---g~ip~~~~~---------l~~l~~l~~~~~~~~~~ 749 (974)
++ +++.+.-.|. |. -+.-..++.++++++.+. ..-|++.+. ++.+.
T Consensus 368 ~~--------Wlr~~~~~~~-~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~------------ 425 (498)
T KOG4237|consen 368 GE--------WLRKKSVVGN-PR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD------------ 425 (498)
T ss_pred HH--------HHhhCCCCCC-CC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh------------
Confidence 42 2334442222 22 122345667777776543 223332221 11111
Q ss_pred ccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccccc
Q 002055 750 SIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAM 829 (974)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l 829 (974)
+....|++.++ .+|..+. ..-..|++.+|.++ .+|.+ .+
T Consensus 426 -----------------------------------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~ 464 (498)
T KOG4237|consen 426 -----------------------------------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LL 464 (498)
T ss_pred -----------------------------------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HH
Confidence 12223344333 3444332 23455677777777 66665 55
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 830 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 830 ~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
.+| .+|+|+|+++-.--..|.++++|.+|-+|||
T Consensus 465 ~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 465 RSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 666 7777777777555666777777777777776
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=9.9e-22 Score=249.38 Aligned_cols=207 Identities=22% Similarity=0.200 Sum_probs=104.9
Q ss_pred CCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcC
Q 002055 491 QKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSG 570 (974)
Q Consensus 491 ~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~ 570 (974)
+.+|+.|++++|++. .++..+ ..+++|+.|+++++...+.+|.+..+++|+.|++++|.....+|.
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~------------ 675 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS------------ 675 (1153)
T ss_pred ccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch------------
Confidence 345555555555443 222221 234455555555444334444444444444444444433333332
Q ss_pred CccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCccc
Q 002055 571 NSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLS 650 (974)
Q Consensus 571 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 650 (974)
.+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. .++|++|++++|.+.
T Consensus 676 -------------si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 676 -------------SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE 738 (1153)
T ss_pred -------------hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence 23345556666666554444555443 4566666666666554445432 345666666666654
Q ss_pred ccCCcccccCCCCCeEeccCCccc------ccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCC
Q 002055 651 GTMPISLKNCTSLMTLDVGENEFF------GNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSG 724 (974)
Q Consensus 651 ~~~p~~l~~l~~L~~L~Ls~N~l~------~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 724 (974)
.+|..+ .+++|+.|++.++... ..++......+++|+.|++++|...+.+|..++++++|+.|++++|+..+
T Consensus 739 -~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 739 -EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred -cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 445433 4556666666553211 01111111134566677777776666677777777777777777665555
Q ss_pred CCChhh
Q 002055 725 TLPNCI 730 (974)
Q Consensus 725 ~ip~~~ 730 (974)
.+|..+
T Consensus 817 ~LP~~~ 822 (1153)
T PLN03210 817 TLPTGI 822 (1153)
T ss_pred eeCCCC
Confidence 566543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1e-23 Score=216.21 Aligned_cols=289 Identities=21% Similarity=0.186 Sum_probs=146.4
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCcc-ccCCCcchhHHhhcCCCCCcEE
Q 002055 148 NLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSY-VNLSKASDWLLVTHMLPSLVEL 226 (974)
Q Consensus 148 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~l~~L~~L 226 (974)
.-..++|..|.|+...|.+|+.+++|+.||||+|.|+.|.+.+|.++.+|..|-+.+ |+|++++...+ +.+.+|+.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHH
Confidence 455667777777766667777777777777777777777777777776666655544 55555543322 333444444
Q ss_pred EcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCC
Q 002055 227 DLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHF 306 (974)
Q Consensus 227 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 306 (974)
.+.-|++.-+....|..+++|..|.+..|.+.... ...+..+..++.+.+..|.+.. ..+++.+..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~------- 212 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD------- 212 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCcccc-----ccccchhhhH-------
Confidence 44444444444444444555555555555443221 2233344444444444433210 0111111100
Q ss_pred CCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCccc
Q 002055 307 NSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGH 386 (974)
Q Consensus 307 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 386 (974)
....|..++......-..+.+.++...-+..+... ++.+ ..-..+.+...+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl--------------------------~s~~~~~d~~d~~ 264 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESL--------------------------PSRLSSEDFPDSI 264 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhH--------------------------HHhhccccCcCCc
Confidence 00112222333333333333333332222111110 1111 0000111111122
Q ss_pred cc-ccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCC
Q 002055 387 LT-DQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWI 465 (974)
Q Consensus 387 ~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 465 (974)
.| ..|..+++|+.|++++|+++++-+.+|.+...++.|.|..|++. .+....|.++..|+.|++.+|+++...+..|.
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 22 23566667777777777777766667777777777777777765 44555666777777777777777777777777
Q ss_pred CcccceeEeccCCCC
Q 002055 466 PPFQLIELGLRSCNV 480 (974)
Q Consensus 466 ~~~~L~~L~l~~~~~ 480 (974)
....|.+|.+-.|.+
T Consensus 344 ~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPF 358 (498)
T ss_pred ccceeeeeehccCcc
Confidence 777777766666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1e-21 Score=230.21 Aligned_cols=261 Identities=26% Similarity=0.348 Sum_probs=135.1
Q ss_pred CCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCcc
Q 002055 494 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSF 573 (974)
Q Consensus 494 L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l 573 (974)
-..|++++++++ .+|..+. ++|+.|++++|+++. +|.. .++|++|++++|+++. +|..+++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence 445666666665 4555442 245666666665553 2211 2344455555444442 233344444444444444
Q ss_pred ccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccC
Q 002055 574 SGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTM 653 (974)
Q Consensus 574 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 653 (974)
+ .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +
T Consensus 275 ----------------------------~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 275 ----------------------------T-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-L 317 (788)
T ss_pred ----------------------------h-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-C
Confidence 3 12221 133445555555554 23321 2445555555555553 2
Q ss_pred CcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhccc
Q 002055 654 PISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNL 733 (974)
Q Consensus 654 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l 733 (974)
|.. ..+|+.|++++|++. .+|. ...+|+.|+|++|++++ +|.. .++|+.|++++|+++ .+|...
T Consensus 318 p~l---p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~--- 381 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--- 381 (788)
T ss_pred CCC---cccccccccccCccc-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---
Confidence 321 123455555555553 2442 22355555566555553 3332 234556666666665 244311
Q ss_pred ccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEc
Q 002055 734 TAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNL 813 (974)
Q Consensus 734 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 813 (974)
..|+.||+++|+|+ .+|.. .++|+.|++
T Consensus 382 ------------------------------------------------~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdL 409 (788)
T PRK15387 382 ------------------------------------------------SGLKELIVSGNRLT-SLPVL---PSELKELMV 409 (788)
T ss_pred ------------------------------------------------cccceEEecCCccc-CCCCc---ccCCCEEEc
Confidence 01255666777766 35543 245667777
Q ss_pred cCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCC
Q 002055 814 SYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 814 s~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
++|+|+ .+|... .+|+.|++++|+++ .+|.++.+++.|+.|+|++|+|+|.+|.
T Consensus 410 S~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 410 SGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 777776 356432 35666777777776 5677777777777777777777776664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.2e-21 Score=229.78 Aligned_cols=256 Identities=26% Similarity=0.309 Sum_probs=182.4
Q ss_pred eeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCc
Q 002055 544 FLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNN 623 (974)
Q Consensus 544 ~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 623 (974)
.|+++.+.++...+..+.+++.|++++|+++. +|. ..++|++|++++|+++. +|.. .++|+.|++++|
T Consensus 205 ~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~-LP~-------lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 205 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA-------LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred EEEcCCCCCCcCCcchhcCCCEEEccCCcCCC-CCC-------CCCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 34444444442222223456666666666654 221 13567788888887773 4542 468999999999
Q ss_pred cccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccC
Q 002055 624 KFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLP 703 (974)
Q Consensus 624 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p 703 (974)
.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++++ +|. ....|+.|++++|++++ +|
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCC----CcccccccccccCcccc-cc
Confidence 987 45553 367999999999998 4564 34789999999999975 564 24578899999999975 56
Q ss_pred ccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccce
Q 002055 704 TKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNL 783 (974)
Q Consensus 704 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 783 (974)
.. ..+|+.|++++|+++ .+|.... .
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls-~LP~lp~---------------------------------------------------~ 363 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLA-SLPTLPS---------------------------------------------------E 363 (788)
T ss_pred cc---ccccceEecCCCccC-CCCCCCc---------------------------------------------------c
Confidence 42 257999999999998 4554211 1
Q ss_pred eeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeeccc
Q 002055 784 VRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 863 (974)
Q Consensus 784 l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~ 863 (974)
++.|++++|+++ .+|.. ..+|+.|+|++|+|+ .+|.. .++|+.||+|+|++++ +|... ..|+.|++++
T Consensus 364 L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~ 431 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYR 431 (788)
T ss_pred cceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhcc
Confidence 256889999998 47864 357999999999999 47754 3689999999999984 78643 4678899999
Q ss_pred CeeeecCCCC-cccCcccccccCCCCCCCCC
Q 002055 864 NYLTGKIPSS-TQLQSFNASCFLGNNLCGAP 893 (974)
Q Consensus 864 N~l~g~iP~~-~~~~~~~~~~~~~n~lcg~~ 893 (974)
|+++ .||.. ..+..+....+.+|.++|..
T Consensus 432 NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 432 NQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred Cccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 9997 78864 34445555567788887653
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.2e-20 Score=235.70 Aligned_cols=177 Identities=25% Similarity=0.372 Sum_probs=84.6
Q ss_pred hcCCCCCcEEEccCcc------cccCCCcccCCCC-CCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhh
Q 002055 266 VFGLSHLLFLNLGYNN------FHGPIPEGLQSLT-SLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSM 338 (974)
Q Consensus 266 l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 338 (974)
+.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4445555555543332 1122344444432 4555555555544 344443 3455555555555544 344444
Q ss_pred hcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCC
Q 002055 339 ARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRL 418 (974)
Q Consensus 339 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 418 (974)
..+++|+.|+++++.....+|. +..++. |+.|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-----LSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-----cccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 5555555555555543333332 222333 5555555555555555555555666666666554333344433 45
Q ss_pred CCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccc
Q 002055 419 SSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTL 456 (974)
Q Consensus 419 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l 456 (974)
++|+.|++++|...+.+|. ..++|+.|++++|.+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAI 737 (1153)
T ss_pred CCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcc
Confidence 5566666655544333332 123455555555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=5e-19 Score=209.47 Aligned_cols=285 Identities=19% Similarity=0.254 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCCC----CCCCCCCCccccc----------------eeeCCCCCceEEEEcCCCCcc
Q 002055 36 VGCLESEREALLRFKQDLQDPSYRLA----SWIGNRDCCAWAG----------------IFCDNVTGHIVELNLRNPFTY 95 (974)
Q Consensus 36 ~~~~~~~~~~ll~~k~~~~~~~~~~~----~W~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~~~ 95 (974)
.+-.++|...++++.+.+..|. ... .|++++++|.-.. |.|. .+.|+.+...+....
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~ 134 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQA 134 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccc
Confidence 3457899999999999998774 333 4998889996544 6664 456777766553111
Q ss_pred ccC--CCc----------cccC--C-----CccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCC
Q 002055 96 YVQ--PDQ----------YEAN--P-----RSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSG 156 (974)
Q Consensus 96 ~~~--~~~----------~~~~--~-----~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~ 156 (974)
.-. +.. +... + +......+... -..+...|+++++.++. +|..+. ++|+.|+|++
T Consensus 135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~C--l~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDC--LKNNKTELRLKILGLTT--IPACIP--EQITTLILDN 208 (754)
T ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhh--cccCceEEEeCCCCcCc--CCcccc--cCCcEEEecC
Confidence 000 000 0000 0 00000001111 12456789999888885 566553 5789999999
Q ss_pred CCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCC
Q 002055 157 SRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIF 236 (974)
Q Consensus 157 n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (974)
|+++. +|..+. ++|++|++++|+++.++... ..+|+.|++++|++..++... ..+|+.|++++|+++.+
T Consensus 209 N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l-----~s~L~~L~Ls~N~L~~L 277 (754)
T PRK15370 209 NELKS-LPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERL-----PSALQSLDLFHNKISCL 277 (754)
T ss_pred CCCCc-CChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhH-----hCCCCEEECcCCccCcc
Confidence 98884 555443 58889999988888765432 246888888888887765432 24678888888877765
Q ss_pred CCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhc
Q 002055 237 PPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCR 316 (974)
Q Consensus 237 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 316 (974)
+. .+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+.
T Consensus 278 P~-~l~--~sL~~L~Ls~N~Lt~--LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~- 345 (754)
T PRK15370 278 PE-NLP--EELRYLSVYDNSIRT--LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP- 345 (754)
T ss_pred cc-ccC--CCCcEEECCCCcccc--Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc-
Confidence 43 222 467777777777764 243322 356777777777763 443332 567777777777663 454442
Q ss_pred CCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCC
Q 002055 317 LTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQ 356 (974)
Q Consensus 317 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 356 (974)
++|+.|++++|+++ .+|..+ .++|+.|++++|.+..
T Consensus 346 -~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 346 -PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred -CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence 56777777777666 345444 2466666666666653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.3e-19 Score=212.42 Aligned_cols=244 Identities=27% Similarity=0.380 Sum_probs=161.3
Q ss_pred eeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCc
Q 002055 544 FLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNN 623 (974)
Q Consensus 544 ~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 623 (974)
.|+++++.++......+..++.|++++|+++. +|..+ ..+|+.|++++|+++ .+|..+. .+|+.|+|++|
T Consensus 182 ~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 182 ELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN 251 (754)
T ss_pred EEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence 34444444443222234556666666666663 33221 246777777777776 4555443 36788888888
Q ss_pred cccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccC
Q 002055 624 KFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLP 703 (974)
Q Consensus 624 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p 703 (974)
.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|+++. +|
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l---p~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL---PSGITHLNVQSNSLTA-LP 320 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc---hhhHHHHHhcCCcccc-CC
Confidence 876 5666553 47888888888887 4666553 578888888888763 56543 3578888888888874 45
Q ss_pred ccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccce
Q 002055 704 TKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNL 783 (974)
Q Consensus 704 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 783 (974)
..+. ++|+.|++++|.+++ +|..+. +.
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--------------------------------------------------~s 347 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS-LPASLP--------------------------------------------------PE 347 (754)
T ss_pred cccc--ccceeccccCCcccc-CChhhc--------------------------------------------------Cc
Confidence 4442 578888888888874 554321 12
Q ss_pred eeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCcccc----CCCCCCee
Q 002055 784 VRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMS----SLTFLNHL 859 (974)
Q Consensus 784 l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~----~l~~L~~L 859 (974)
|+.|++++|+|+ .+|..+. +.|+.|+|++|+|+ .+|..+. ..|+.||+++|+++ .+|.++. .++.+..+
T Consensus 348 L~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred ccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 367888888887 5776553 57888888888888 5676654 36888888888887 5555443 34777888
Q ss_pred ecccCeeee
Q 002055 860 NLSNNYLTG 868 (974)
Q Consensus 860 ~ls~N~l~g 868 (974)
++.+|+++.
T Consensus 421 ~L~~Npls~ 429 (754)
T PRK15370 421 IVEYNPFSE 429 (754)
T ss_pred EeeCCCccH
Confidence 888888763
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=8.3e-19 Score=193.96 Aligned_cols=259 Identities=24% Similarity=0.231 Sum_probs=124.8
Q ss_pred CcEEECcCCccccccchhhHHhhhcCCcccccccccccccc------cCCcccccCCCCCeeeCCCccccccCCccccCC
Q 002055 563 LIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQG------NLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSL 636 (974)
Q Consensus 563 L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 636 (974)
|+.++++++.++..-...++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 45555555554433222333344445556666666655541 223344555666666666666654444444433
Q ss_pred CC---ccEEEccCCcccc----cCCcccccC-CCCCeEeccCCcccccCchhHHh---hhhhhhhhhccCCcccc----c
Q 002055 637 SS---LVSLHLRKNRLSG----TMPISLKNC-TSLMTLDVGENEFFGNIPSWFGE---MFSIMVFLILRSNYFHG----L 701 (974)
Q Consensus 637 ~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~---~~~~L~~L~L~~N~l~~----~ 701 (974)
.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++..+..+.. .+..|+.|++++|.+++ .
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 33 6666666666652 222334444 56666666666665332221111 12345555555555542 1
Q ss_pred cCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhcc
Q 002055 702 LPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEIL 781 (974)
Q Consensus 702 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 781 (974)
++..+..+++|+.|++++|.+++.-+..+... ...+
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--------------------------------------------~~~~ 220 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAET--------------------------------------------LASL 220 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHH--------------------------------------------hccc
Confidence 22333444566666666665553221111100 0012
Q ss_pred ceeeEEEeccccceecCCccccc-----ccCCCEEEccCceee----eeccccccccCCCCEEECCCCccccc----CCc
Q 002055 782 NLVRIIDVSKNFFSGTLPIGLTN-----LKALQSLNLSYNIFT----GRIPETIGAMRSLESIDFSVNKFTGE----IPQ 848 (974)
Q Consensus 782 ~~l~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~LdLs~N~l~g~----iP~ 848 (974)
+.|+.||+++|.+++..+..+.. .+.|+.|++++|.++ ..++..+..+++|+.+|+++|.++.. +..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 23355666666665432222211 256666666666665 22333444556666666666666633 333
Q ss_pred cccCC-CCCCeeecccCe
Q 002055 849 SMSSL-TFLNHLNLSNNY 865 (974)
Q Consensus 849 ~l~~l-~~L~~L~ls~N~ 865 (974)
.+... +.|+++++.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 33333 456666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.8e-17 Score=183.24 Aligned_cols=144 Identities=28% Similarity=0.326 Sum_probs=63.3
Q ss_pred hhcCCCCCEEECcCCCCCCCchHhhhcCCC---CcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCccc----
Q 002055 314 LCRLTHLEHLSLSHNSLEGRIPRSMARLCN---LKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGH---- 386 (974)
Q Consensus 314 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~---- 386 (974)
+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+.+.....+...+..++.+|++|++++|.+.+.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344445555555555544333333333333 5555555554442221111112223312255555555554421
Q ss_pred ccccccCCCCCCEEeccCccCCCC----cccccCCCCCCCEEEccCCcccceech---hhhcCCCCCcEEEcCCcccc
Q 002055 387 LTDQIGLFKNLDSLDLSNNSIVGL----VPQSFGRLSSLRVLQLYRNKLHGTLSE---IHFVNLTKLSVFLVGENTLT 457 (974)
Q Consensus 387 ~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~l~~n~l~ 457 (974)
++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.... ..+..+++|+.|++++|.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 222344445566666666655532 122233445666666666655422111 12344555666665555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.9e-17 Score=148.28 Aligned_cols=143 Identities=35% Similarity=0.473 Sum_probs=128.1
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
+...+.|.|++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.++.|+.|++.-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456777888999888 67778999999999999999987 78889999999999999999998 8899999999999999
Q ss_pred ccCCcccc-cCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccc
Q 002055 668 VGENEFFG-NIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAM 736 (974)
Q Consensus 668 Ls~N~l~~-~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l 736 (974)
+.+|++.. .+|..|. .++.|+.|+|++|.|. .+|..++++++||.|.+.+|.+. ++|..++.++.|
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 99999975 4788887 7899999999999996 78999999999999999999987 889998888776
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.5e-15 Score=179.99 Aligned_cols=116 Identities=37% Similarity=0.641 Sum_probs=103.3
Q ss_pred eeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeeccc
Q 002055 784 VRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 863 (974)
Q Consensus 784 l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~ 863 (974)
++.|+|++|.++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCc--ccCcccccccCCC-CCCCCCCCCCCC
Q 002055 864 NYLTGKIPSST--QLQSFNASCFLGN-NLCGAPLPKNCT 899 (974)
Q Consensus 864 N~l~g~iP~~~--~~~~~~~~~~~~n-~lcg~~~~~~c~ 899 (974)
|+++|.+|..- .+.......+.+| .+||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999742 1223344568899 899976545564
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.9e-17 Score=148.92 Aligned_cols=184 Identities=28% Similarity=0.487 Sum_probs=124.8
Q ss_pred ccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhh
Q 002055 610 MSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMV 689 (974)
Q Consensus 610 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~ 689 (974)
.++...+.|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.++.|+.|+++-|++
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------------- 91 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------------- 91 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh----------------
Confidence 34455555666666655 44445555566666666666655 4555555555555555555444
Q ss_pred hhhccCCccccccCccccCCCCCcEEEccCCcCCC-CCChhhcccccccccCCCccCccccccCCCccccccccceeeEE
Q 002055 690 FLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSG-TLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALV 768 (974)
Q Consensus 690 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (974)
. ..|..|+.++.|+.|||++|++.. .+|..|-.++.
T Consensus 92 ---------~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t--------------------------------- 128 (264)
T KOG0617|consen 92 ---------N-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT--------------------------------- 128 (264)
T ss_pred ---------h-cCccccCCCchhhhhhccccccccccCCcchhHHHH---------------------------------
Confidence 2 456677777778888888877763 23433322222
Q ss_pred EEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCc
Q 002055 769 VMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQ 848 (974)
Q Consensus 769 ~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~ 848 (974)
|+.|+|+.|.|. .+|.+++++++||.|.+..|.+- ++|..+|.++.|+.|.+.+|+++ .+|.
T Consensus 129 ---------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 129 ---------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred ---------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence 256778888886 78999999999999999999988 78999999999999999999998 7788
Q ss_pred cccCCCC---CCeeecccCeeeecCCC
Q 002055 849 SMSSLTF---LNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 849 ~l~~l~~---L~~L~ls~N~l~g~iP~ 872 (974)
+++++.- =+.+.+.+|+..-+|-+
T Consensus 191 el~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 191 ELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 8887642 24456677877665543
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=6.2e-13 Score=157.81 Aligned_cols=149 Identities=33% Similarity=0.436 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeeCC--CC--CceEEEEcCCCCccccCCCccccCCCc
Q 002055 37 GCLESEREALLRFKQDLQDPSYRLASWIGNRDCC----AWAGIFCDN--VT--GHIVELNLRNPFTYYVQPDQYEANPRS 108 (974)
Q Consensus 37 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~ 108 (974)
.+.++|..||+++|+++.++.. .+|. +..|| .|.||.|.. .. .+|+.|+|+++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---------------- 428 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---------------- 428 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC----------------
Confidence 4567899999999999976532 4895 44443 799999952 22 25999999984
Q ss_pred cccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCc
Q 002055 109 MLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNF 188 (974)
Q Consensus 109 ~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~ 188 (974)
.+.|.+|+.+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|+.++++++|++|+|++|.++...+
T Consensus 429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 429 GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 88899999999999999999999999985 99999999999999999999999999999999999999999998876555
Q ss_pred cccCCC-CCCCeecCccc
Q 002055 189 GWLSGL-SFLEHLDFSYV 205 (974)
Q Consensus 189 ~~l~~l-~~L~~L~Ls~n 205 (974)
..+... .++..+++.+|
T Consensus 508 ~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 508 AALGGRLLHRASFNFTDN 525 (623)
T ss_pred hHHhhccccCceEEecCC
Confidence 444332 23334444433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=1.3e-13 Score=148.94 Aligned_cols=194 Identities=27% Similarity=0.414 Sum_probs=112.5
Q ss_pred CCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhh
Q 002055 613 QNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLI 692 (974)
Q Consensus 613 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~ 692 (974)
..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|.++.++..|+.|||+.|+++ .+|..+. .--|+.|.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEE
Confidence 33455666777665 56666666666666666666665 56666666666666666666663 4454443 12355556
Q ss_pred ccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEec
Q 002055 693 LRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKG 772 (974)
Q Consensus 693 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (974)
+++|+++ .+|+.++.+..|..||.+.|++. .+|..++.+.+|
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl------------------------------------ 191 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL------------------------------------ 191 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH------------------------------------
Confidence 6666654 45555555556666666666655 555555544444
Q ss_pred ccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccc--
Q 002055 773 VAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSM-- 850 (974)
Q Consensus 773 ~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l-- 850 (974)
+.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|. ..|.++
T Consensus 192 ------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 192 ------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred ------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 23344455554 456555533 3566666666666 56666666666666666666665 444444
Q ss_pred -cCCCCCCeeecccCe
Q 002055 851 -SSLTFLNHLNLSNNY 865 (974)
Q Consensus 851 -~~l~~L~~L~ls~N~ 865 (974)
+...-.++|+...++
T Consensus 256 kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccceeeeeeecchhcc
Confidence 234445566666554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=8.5e-13 Score=142.69 Aligned_cols=188 Identities=28% Similarity=0.391 Sum_probs=97.5
Q ss_pred cccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcc
Q 002055 594 LFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEF 673 (974)
Q Consensus 594 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 673 (974)
.|++.|++. ++|..++.+..|+.+.|..|.+. .+|..+.++..|+.|+|+.|+++ .+|..++.|+ |+.|-+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 334444443 34444444444444444444443 44444444444444455444444 3444444443 44555555554
Q ss_pred cccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCC
Q 002055 674 FGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPL 753 (974)
Q Consensus 674 ~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~ 753 (974)
+.+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..++
T Consensus 156 -~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------------- 212 (722)
T KOG0532|consen 156 -TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------------- 212 (722)
T ss_pred -ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------------
Confidence 34444444 4455555555555553 34555555666666666666655 4554443221
Q ss_pred CccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccc---cccC
Q 002055 754 NSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETI---GAMR 830 (974)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~l~ 830 (974)
|..||+|+|+++ .||.+|.+|+.|++|-|.+|.++ ..|..+ |...
T Consensus 213 ------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVH 260 (722)
T KOG0532|consen 213 ------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVH 260 (722)
T ss_pred ------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcccee
Confidence 246677777776 67777777777777777777776 555544 2223
Q ss_pred CCCEEECCCC
Q 002055 831 SLESIDFSVN 840 (974)
Q Consensus 831 ~L~~LdLs~N 840 (974)
=-++|+..-+
T Consensus 261 IFKyL~~qA~ 270 (722)
T KOG0532|consen 261 IFKYLSTQAC 270 (722)
T ss_pred eeeeecchhc
Confidence 3345555544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.7e-11 Score=137.93 Aligned_cols=84 Identities=39% Similarity=0.583 Sum_probs=50.5
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
+.+++++|... .++..+.+++.+..|.+++|++. .+|..++.+++++.|++++|.++ .++. ++.+..+++|++++|
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCc
Confidence 44555555322 35555666666666666666665 33556666666666666666666 3443 666666666666666
Q ss_pred eeeecCCC
Q 002055 865 YLTGKIPS 872 (974)
Q Consensus 865 ~l~g~iP~ 872 (974)
.++...|.
T Consensus 288 ~~~~~~~~ 295 (394)
T COG4886 288 SLSNALPL 295 (394)
T ss_pred cccccchh
Confidence 66665554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=5.4e-11 Score=135.37 Aligned_cols=182 Identities=30% Similarity=0.485 Sum_probs=105.5
Q ss_pred CCCCeeeCCCccccccCCccccCCC-CccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhh
Q 002055 613 QNLMMLDLSNNKFIGNLPTSFGSLS-SLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFL 691 (974)
Q Consensus 613 ~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L 691 (974)
+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..++.|+.|++++|++. .+|...+ ..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhhe
Confidence 44555555555554 3343344442 5555555555555 33344555555555555555553 2333222 24555555
Q ss_pred hccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEe
Q 002055 692 ILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMK 771 (974)
Q Consensus 692 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (974)
++++|++. .+|........|+++++++|+.. .++..+.++..+
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l----------------------------------- 234 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL----------------------------------- 234 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-----------------------------------
Confidence 55555554 33433334444666666666422 233333333322
Q ss_pred cccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCcccc
Q 002055 772 GVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMS 851 (974)
Q Consensus 772 ~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~ 851 (974)
..+.+++|++. .+|..++.++.++.|++++|.++ .++. ++.+..++.||+++|.++..+|....
T Consensus 235 -------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 235 -------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred -------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhc
Confidence 44556677765 34667788888999999999988 5555 88889999999999999877766543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-11 Score=129.79 Aligned_cols=164 Identities=26% Similarity=0.195 Sum_probs=96.2
Q ss_pred cCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC--ccccCCCCCCCEEEcCCCCccccCccc-cCCCC
Q 002055 119 LDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMI--PHQLGNLSSLQYLVLSRNFLHLVNFGW-LSGLS 195 (974)
Q Consensus 119 ~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~ 195 (974)
.++..|+...|.++.+.....-.....|++++.|||+.|-+..-- -.....|++|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466777777777776654322235566777777777777554321 133456777777777777765433221 12456
Q ss_pred CCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEE
Q 002055 196 FLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFL 275 (974)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 275 (974)
+|+.|.++.|.++ ..+.......+|+|+.|+|..|............+..|++|||++|.+.........+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6777777777776 444555555667777777777653333334444556666666666665543222344555566666
Q ss_pred EccCcccc
Q 002055 276 NLGYNNFH 283 (974)
Q Consensus 276 ~L~~n~l~ 283 (974)
+++.+.+.
T Consensus 277 nls~tgi~ 284 (505)
T KOG3207|consen 277 NLSSTGIA 284 (505)
T ss_pred hccccCcc
Confidence 66555554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=3.4e-11 Score=123.57 Aligned_cols=232 Identities=27% Similarity=0.276 Sum_probs=123.4
Q ss_pred ccccCcCcCCCCCCEEECCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCC----CCccc-------cCCCCCCCEEE
Q 002055 112 GKVNPSLLDLKHLSYLDLSFNDFQGV---PIPRFIGSMGNLKYLNLSGSRFVG----MIPHQ-------LGNLSSLQYLV 177 (974)
Q Consensus 112 ~~l~~~l~~l~~L~~L~Ls~n~i~~~---~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~-------~~~l~~L~~L~ 177 (974)
+.+-+.+..+..+++++||+|.|... .+...+.+.++|+..++++- ++| .+|+. +..+++|++||
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 34445667788999999999988642 13455677788999888863 233 24433 34566788888
Q ss_pred cCCCCccccCccc----cCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCC
Q 002055 178 LSRNFLHLVNFGW----LSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLS 253 (974)
Q Consensus 178 Ls~n~i~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 253 (974)
||.|.+....+.. ++.+..|++|.|.+|.+.....-... ..|.+|. .......-+.|+++..+
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~----~al~~l~---------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG----RALFELA---------VNKKAASKPKLRVFICG 165 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH----HHHHHHH---------HHhccCCCcceEEEEee
Confidence 8887766554442 34556666666666655543111000 0000000 00112223455555555
Q ss_pred CCCCCCCC---ChhhhcCCCCCcEEEccCcccccC----CCcccCCCCCCCEEEcCCCCCCCC----chhhhhcCCCCCE
Q 002055 254 HNQFDNSF---VPSWVFGLSHLLFLNLGYNNFHGP----IPEGLQSLTSLKHLDLSFNHFNSS----IPNLLCRLTHLEH 322 (974)
Q Consensus 254 ~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~ 322 (974)
.|++.... +...+...+.|+.+.++.|.+... +...+..+++|++|||.+|.++.. +...+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 55554321 112334445666666666655421 123455666666666666666532 2223445566666
Q ss_pred EECcCCCCCCCchHhh-----hcCCCCcEEEccCCCCCCc
Q 002055 323 LSLSHNSLEGRIPRSM-----ARLCNLKRLYLSGAKLNQE 357 (974)
Q Consensus 323 L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~ 357 (974)
|++++|.+...-...+ ...++|++|.+.+|.++..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 6666666654333222 1245566666666655543
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=2.2e-11 Score=124.87 Aligned_cols=249 Identities=22% Similarity=0.181 Sum_probs=150.1
Q ss_pred CCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCC---CCCc-------ccCCCCCCC
Q 002055 81 TGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGV---PIPR-------FIGSMGNLK 150 (974)
Q Consensus 81 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~---~~p~-------~l~~l~~L~ 150 (974)
...++.|+|+|++.. ..-...+.+.+.+.+.|+..++|.- +++. ++|+ .+-.+++|+
T Consensus 29 ~~s~~~l~lsgnt~G------------~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFG------------TEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred cCceEEEeccCCchh------------HHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 457999999995211 0112235566778889999999864 2221 2443 345578999
Q ss_pred EEeCCCCCCCCCCccc----cCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEE
Q 002055 151 YLNLSGSRFVGMIPHQ----LGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVEL 226 (974)
Q Consensus 151 ~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 226 (974)
+||||+|.+...-+.. +..+..|++|.|.+|.+.......++. .|.+|. . .......+.|+++
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~---------~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V---------NKKAASKPKLRVF 162 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H---------HhccCCCcceEEE
Confidence 9999999987554443 467899999999999887655443221 011111 0 0011223445555
Q ss_pred EcCCCCCCCCCC----CCCcCCCCCCEEeCCCCCCCCCC---ChhhhcCCCCCcEEEccCcccccC----CCcccCCCCC
Q 002055 227 DLSNCQLHIFPP----LPVANFSTLTTLDLSHNQFDNSF---VPSWVFGLSHLLFLNLGYNNFHGP----IPEGLQSLTS 295 (974)
Q Consensus 227 ~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~ 295 (974)
...+|++...+. ..|...+.|+.+.+..|.+.... +...+..+++|++|||.+|.++.. +...+..+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 555555443332 22334455555555555553221 123455677777777777766532 3345666778
Q ss_pred CCEEEcCCCCCCCCchhhh-----hcCCCCCEEECcCCCCCCC----chHhhhcCCCCcEEEccCCCCC
Q 002055 296 LKHLDLSFNHFNSSIPNLL-----CRLTHLEHLSLSHNSLEGR----IPRSMARLCNLKRLYLSGAKLN 355 (974)
Q Consensus 296 L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 355 (974)
|++|++++|.+...-...+ ...+.|++|.+.+|.++.. +...+...+.|+.|+|++|.+.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 8888888887765433333 2367888888888887643 2234455778888888888773
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.5e-11 Score=126.73 Aligned_cols=164 Identities=24% Similarity=0.188 Sum_probs=104.3
Q ss_pred CCCCCCCEEEcCCCCccccCc-cccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCC-CcCCC
Q 002055 168 GNLSSLQYLVLSRNFLHLVNF-GWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLP-VANFS 245 (974)
Q Consensus 168 ~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 245 (974)
+++++|+...|.++.+...+. +....|++++.|||+.|-+..+.........+|+|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355666666666666554443 3556678888888888888877777777778888888888888876543322 22456
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCc-hhhhhcCCCCCEEE
Q 002055 246 TLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSI-PNLLCRLTHLEHLS 324 (974)
Q Consensus 246 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~ 324 (974)
+|+.|.++.|.++...+...+..+++|+.|+|..|.....-......+..|++|||++|.+.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77777777777764433344456777777777777422222223344566777777777654221 12345666777777
Q ss_pred CcCCCCC
Q 002055 325 LSHNSLE 331 (974)
Q Consensus 325 L~~n~l~ 331 (974)
++.|.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 7766665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=5.8e-11 Score=115.08 Aligned_cols=129 Identities=23% Similarity=0.279 Sum_probs=36.7
Q ss_pred cCCCCCCEEECCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCC
Q 002055 119 LDLKHLSYLDLSFNDFQGVPIPRFIG-SMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFL 197 (974)
Q Consensus 119 ~~l~~L~~L~Ls~n~i~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 197 (974)
.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|+|+.+.......+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3444667777777777653 2344 466777777777776643 245666666666666666665543222345555
Q ss_pred CeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCC--hhhhcCCCCCcEE
Q 002055 198 EHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFV--PSWVFGLSHLLFL 275 (974)
Q Consensus 198 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L 275 (974)
++|++++|++.+..+. ..+..+++|++|++.+|.+..... ...+..+++|+.|
T Consensus 91 ~~L~L~~N~I~~l~~l-------------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 91 QELYLSNNKISDLNEL-------------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp -EEE-TTS---SCCCC-------------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred CEEECcCCcCCChHHh-------------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 5555555555544332 234455555555555555442210 1234456666666
Q ss_pred Ec
Q 002055 276 NL 277 (974)
Q Consensus 276 ~L 277 (974)
|-
T Consensus 146 D~ 147 (175)
T PF14580_consen 146 DG 147 (175)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=2.6e-10 Score=113.98 Aligned_cols=205 Identities=24% Similarity=0.255 Sum_probs=107.7
Q ss_pred ccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccC---c
Q 002055 112 GKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVN---F 188 (974)
Q Consensus 112 ~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~---~ 188 (974)
..+|-.+..+++|..+.+|.+.-.. +-.....=|.|+++.+.+..+... | .+--.+.+ -|.++..-+... .
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~--~D~~~~E~~t~~G~~~ 277 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDV-P-SLLPETIL--ADPSGSEPSTSNGSAL 277 (490)
T ss_pred cccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccc-c-cccchhhh--cCccCCCCCccCCceE
Confidence 3455566777888888888775433 222222346788888777655422 1 11111111 122211111000 0
Q ss_pred cccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcC
Q 002055 189 GWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFG 268 (974)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 268 (974)
..+...+.|+++||++|.++.+.+ ...-.|+++.|++++|.+..+.. +..+++|+.|||++|.++. ...|-..
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~--~~Gwh~K 350 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE--CVGWHLK 350 (490)
T ss_pred EecchHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh--hhhhHhh
Confidence 112334566667777776666533 22345666777777776666543 5666666677777666653 2344445
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCC-chhhhhcCCCCCEEECcCCCCC
Q 002055 269 LSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSS-IPNLLCRLTHLEHLSLSHNSLE 331 (974)
Q Consensus 269 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 331 (974)
+.+++.|.|+.|.+... ..+.++-+|..||+++|++... -...+++++.|+++.|.+|.+.
T Consensus 351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 56666666666665422 3455556666666666665421 1123555555666666555555
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2.4e-09 Score=103.84 Aligned_cols=106 Identities=32% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCCCEEeCCCCCCCCCCChhhhc-CCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhh-hcCCCCCE
Q 002055 245 STLTTLDLSHNQFDNSFVPSWVF-GLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLL-CRLTHLEH 322 (974)
Q Consensus 245 ~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~ 322 (974)
.++++|+|++|.++. .+.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++.. ...+ ..+++|++
T Consensus 19 ~~~~~L~L~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQIST---IENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccc---ccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 344555555555543 22233 345556666666655532 2355566666666666666633 2223 34666777
Q ss_pred EECcCCCCCCCc-hHhhhcCCCCcEEEccCCCCCC
Q 002055 323 LSLSHNSLEGRI-PRSMARLCNLKRLYLSGAKLNQ 356 (974)
Q Consensus 323 L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 356 (974)
|++++|++...- -..++.+++|+.|++.+|++..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 777776665321 1345666677777777776543
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=4.8e-10 Score=127.67 Aligned_cols=218 Identities=30% Similarity=0.306 Sum_probs=137.6
Q ss_pred CCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCe
Q 002055 120 DLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEH 199 (974)
Q Consensus 120 ~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 199 (974)
.+..++.++++.|.+.. +-..+..+++|..|++.+|.+... ...+..+++|++|++++|.|+.+.. +..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhh
Confidence 45666677777777764 234467778888888888887743 2226677888888888888776654 555666777
Q ss_pred ecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCC-CCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEcc
Q 002055 200 LDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPP-LPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLG 278 (974)
Q Consensus 200 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 278 (974)
|++++|.++.+..+. .++.|+.+++++|++..+.. . ...+.+++.+++.+|.+.. ...+..+..+..+++.
T Consensus 145 L~l~~N~i~~~~~~~----~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 145 LNLSGNLISDISGLE----SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLLSLL 216 (414)
T ss_pred heeccCcchhccCCc----cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHhhcc
Confidence 888888777765432 26777777777777776655 3 4666777777777777654 3444555555556777
Q ss_pred CcccccCCCcccCCCCC--CCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCC
Q 002055 279 YNNFHGPIPEGLQSLTS--LKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLN 355 (974)
Q Consensus 279 ~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 355 (974)
.|.++..- .+..+.. |+.+++++|++. ..+..+..+.++..|++.+|.+...- .+.....+..+....+.+.
T Consensus 217 ~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 217 DNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 77666331 2223333 777777777766 23344556677777777777665321 2333444445555555443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.7e-09 Score=108.13 Aligned_cols=132 Identities=31% Similarity=0.344 Sum_probs=75.5
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEE
Q 002055 269 LSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLY 348 (974)
Q Consensus 269 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (974)
...|+++||++|.++ .+.++..-.|.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-.++-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345666666666665 3445555556666666666666522 23556666666666666655 3333444555666666
Q ss_pred ccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCc-ccccCCCCCCCEEEcc
Q 002055 349 LSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLV-PQSFGRLSSLRVLQLY 427 (974)
Q Consensus 349 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~ 427 (974)
|++|.+... ..++.+-+|..||+++|+|.... ...++++|-|+.+.|.
T Consensus 359 La~N~iE~L-------------------------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 359 LAQNKIETL-------------------------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhhhHhhh-------------------------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 666554320 12444556677777777665431 2356777777777777
Q ss_pred CCccccee
Q 002055 428 RNKLHGTL 435 (974)
Q Consensus 428 ~n~l~~~i 435 (974)
+|.+.+..
T Consensus 408 ~NPl~~~v 415 (490)
T KOG1259|consen 408 GNPLAGSV 415 (490)
T ss_pred CCCccccc
Confidence 77776443
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.74 E-value=1.1e-08 Score=74.32 Aligned_cols=39 Identities=49% Similarity=0.994 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceeeC
Q 002055 40 ESEREALLRFKQDLQ-DPSYRLASWIGN--RDCCAWAGIFCD 78 (974)
Q Consensus 40 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~--~~~c~w~gv~c~ 78 (974)
++|++||++||+++. +|.+.+.+|+.+ .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 577889999865 799999999995
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=9e-09 Score=81.94 Aligned_cols=60 Identities=40% Similarity=0.542 Sum_probs=35.3
Q ss_pred CCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCee
Q 002055 807 ALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 866 (974)
Q Consensus 807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l 866 (974)
+|+.|++++|+++...+..|..+++|++||+++|+++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666666644445556666666666666666655555566666666666666653
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=9.2e-09 Score=124.77 Aligned_cols=235 Identities=25% Similarity=0.199 Sum_probs=132.1
Q ss_pred ccccC-cCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccc
Q 002055 112 GKVNP-SLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 112 ~~l~~-~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~ 190 (974)
..++. .|..+++|++|||++|.=-+ ++|..++.|-+||+|+++++.+. .+|..+++|++|.+|++..+.-....++.
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 33443 36779999999999875333 48999999999999999999987 78999999999999999988755555666
Q ss_pred cCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCC----EEeCCCCCCCCCCChhhh
Q 002055 191 LSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLT----TLDLSHNQFDNSFVPSWV 266 (974)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~l 266 (974)
...+.+||+|.+..............+.++.+|+.+....... .....+..+..|+ .+.+.++... ..+..+
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~--~~~~~~ 713 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR--TLISSL 713 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc--eeeccc
Confidence 7778999999887766444333444445566666665543332 0001112222222 2222221111 124455
Q ss_pred cCCCCCcEEEccCcccccCCCcccCC------CCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhc
Q 002055 267 FGLSHLLFLNLGYNNFHGPIPEGLQS------LTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMAR 340 (974)
Q Consensus 267 ~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 340 (974)
..+.+|+.|.+.++.+.......... ++++..+...++..- ..+.+....++|+.|.+..+.....+.+....
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHH
Confidence 56667777777666654322211111 112222222222211 12223334456666666666544444444444
Q ss_pred CCCCcEEEccCCC
Q 002055 341 LCNLKRLYLSGAK 353 (974)
Q Consensus 341 l~~L~~L~L~~n~ 353 (974)
+..++.+.+..+.
T Consensus 793 ~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 793 LLELKELILPFNK 805 (889)
T ss_pred hhhcccEEecccc
Confidence 4444444444333
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=2.6e-08 Score=79.28 Aligned_cols=60 Identities=28% Similarity=0.429 Sum_probs=55.0
Q ss_pred eeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcc
Q 002055 783 LVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKF 842 (974)
Q Consensus 783 ~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 842 (974)
.|+.|++++|+++..-+..+.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999999966557889999999999999999988888999999999999999986
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=5.8e-09 Score=118.83 Aligned_cols=232 Identities=29% Similarity=0.291 Sum_probs=171.1
Q ss_pred cccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccc
Q 002055 111 VGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 111 ~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~ 190 (974)
.+.+-..+..+++|+.|++.+|.|..+ ...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.|..+..
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-- 157 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-- 157 (414)
T ss_pred hhhhhcccccccceeeeeccccchhhc--ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC--
Confidence 333445578899999999999999864 44478899999999999999866 346778889999999999987654
Q ss_pred cCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCC
Q 002055 191 LSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLS 270 (974)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 270 (974)
+..+++|+.+++++|++..+... . ...+.+++.+++.+|.+..+.. +..+..+..+++..|.++. ...+..+.
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~---~~~l~~~~ 230 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISK---LEGLNELV 230 (414)
T ss_pred CccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccccee---ccCcccch
Confidence 56699999999999999988652 1 3568899999999999887654 3334555556888888764 22333334
Q ss_pred C--CcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCC---chHh-hhcCCCC
Q 002055 271 H--LLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGR---IPRS-MARLCNL 344 (974)
Q Consensus 271 ~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~~~~-l~~l~~L 344 (974)
. |+.+++++|++.. .+..+..+..+..|++.+|++... ..+...+.+..+....+.+... .... ....+.+
T Consensus 231 ~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (414)
T KOG0531|consen 231 MLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTL 307 (414)
T ss_pred hHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccc
Confidence 3 8999999999883 346677889999999999988743 2344566677777777776522 1111 4556677
Q ss_pred cEEEccCCCCCCcc
Q 002055 345 KRLYLSGAKLNQEI 358 (974)
Q Consensus 345 ~~L~L~~n~l~~~~ 358 (974)
+...+..+......
T Consensus 308 ~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 308 VTLTLELNPIRKIS 321 (414)
T ss_pred cccccccCcccccc
Confidence 77777777665533
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=8e-10 Score=110.64 Aligned_cols=199 Identities=24% Similarity=0.227 Sum_probs=108.6
Q ss_pred CCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCC-ccccCcc-ccCCCCCCCee
Q 002055 123 HLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNF-LHLVNFG-WLSGLSFLEHL 200 (974)
Q Consensus 123 ~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~~~~-~l~~l~~L~~L 200 (974)
.|++||||+..|+...+...++.|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.+. ++.-... .++.|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 478888888887765555667778888888888888887777777888888888887653 3322222 34556666666
Q ss_pred cCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCc
Q 002055 201 DFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYN 280 (974)
Q Consensus 201 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 280 (974)
+++.|.+....--.....--++|+.|+++++.-. +....+......+++|..|||++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn----------------------l~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN----------------------LQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh----------------------hhhhHHHHHHHhCCceeeeccccc
Confidence 6666555443211111122234444444443210 111111222345566666666655
Q ss_pred c-cccCCCcccCCCCCCCEEEcCCCCCCCCchhh---hhcCCCCCEEECcCCCCCCCchHhhhcCCCCc
Q 002055 281 N-FHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNL---LCRLTHLEHLSLSHNSLEGRIPRSMARLCNLK 345 (974)
Q Consensus 281 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 345 (974)
. ++......+.+++.|++|.++.|.. .+|.. +...+.|.+|++.++--.+...-....+++|+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 3 2222223345566666666666653 34443 34456677777666543333322333444444
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=4.9e-08 Score=118.58 Aligned_cols=105 Identities=22% Similarity=0.146 Sum_probs=46.4
Q ss_pred CCCEEeCCCCC--CCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcE
Q 002055 148 NLKYLNLSGSR--FVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVE 225 (974)
Q Consensus 148 ~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~ 225 (974)
+|++|-+..|. +....+..|..++.|++|||++|.--..-|..++.+-+||+|++++..+..+|. .++++..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~---~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS---GLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch---HHHHHHhhhe
Confidence 45555444443 222222334445555555555443323333334444444444444444443322 2234445555
Q ss_pred EEcCCCCCCCCCCCCCcCCCCCCEEeCCCC
Q 002055 226 LDLSNCQLHIFPPLPVANFSTLTTLDLSHN 255 (974)
Q Consensus 226 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 255 (974)
|++..+......+.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 555544433333334444555555555443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.1e-08 Score=99.46 Aligned_cols=113 Identities=21% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCCCCEEEcCCCCccccCcc-cc-CCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCC
Q 002055 170 LSSLQYLVLSRNFLHLVNFG-WL-SGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTL 247 (974)
Q Consensus 170 l~~L~~L~Ls~n~i~~~~~~-~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 247 (974)
+..++.|.+.++.|...... .| +.++.++.+||.+|.+++..++...+.++|.|+.|+++.|++...+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 33444555555555444332 22 35688899999999999999999999999999999999999876654333566788
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCcEEEccCccc
Q 002055 248 TTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNF 282 (974)
Q Consensus 248 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 282 (974)
++|-|.+..+.-......+..++.++.|.++.|.+
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 88888888776555455666777888888877743
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.2e-08 Score=100.61 Aligned_cols=157 Identities=25% Similarity=0.214 Sum_probs=95.0
Q ss_pred CCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCC-CCCCCCChhhhcCCCCCcE
Q 002055 196 FLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHN-QFDNSFVPSWVFGLSHLLF 274 (974)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~ 274 (974)
.|++|||+...++.. .....+..+.+|+.|.+.++++.+.....+++-.+|+.|+++.+ .++...+.-.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 455555555544432 22233445666666666666666666666666777777777764 3443333345667888888
Q ss_pred EEccCcccccCCCcc-cCC-CCCCCEEEcCCCCCC---CCchhhhhcCCCCCEEECcCCC-CCCCchHhhhcCCCCcEEE
Q 002055 275 LNLGYNNFHGPIPEG-LQS-LTSLKHLDLSFNHFN---SSIPNLLCRLTHLEHLSLSHNS-LEGRIPRSMARLCNLKRLY 348 (974)
Q Consensus 275 L~L~~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 348 (974)
|++++|.+....-.. +.+ -++|+.|+|+++.-. ..+..-...+++|.+|||++|. ++......|-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888766433211 111 257788888876421 2222334567888888888764 4544555677777888888
Q ss_pred ccCCC
Q 002055 349 LSGAK 353 (974)
Q Consensus 349 L~~n~ 353 (974)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 87775
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=8.6e-09 Score=114.98 Aligned_cols=180 Identities=28% Similarity=0.266 Sum_probs=89.6
Q ss_pred cCcCcCCCCCCEEECCCCCCCCCCCCcccCCC-CCCCEEeCCCCCCC---CCCcc---ccCC---CCCCCEEEcCCCCcc
Q 002055 115 NPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSM-GNLKYLNLSGSRFV---GMIPH---QLGN---LSSLQYLVLSRNFLH 184 (974)
Q Consensus 115 ~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l-~~L~~L~Ls~n~l~---~~~p~---~~~~---l~~L~~L~Ls~n~i~ 184 (974)
|-+|..+..||+|.|+++.+.... .+..+ .+|++|...+. +. ..+.. .|.+ --+|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~---GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK---GLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh---hhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 556788999999999999886421 11111 23334332211 10 00000 0110 123444455555544
Q ss_pred ccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChh
Q 002055 185 LVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPS 264 (974)
Q Consensus 185 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 264 (974)
..+ ..+.-++.|+.|+|+.|++++.. .+..+++|++|||+.|.+..++-.....+. |..|.+++|.++. ..
T Consensus 178 ~mD-~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t---L~ 248 (1096)
T KOG1859|consen 178 LMD-ESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT---LR 248 (1096)
T ss_pred hHH-HHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh---hh
Confidence 322 22444555555555555555543 223455566666666655555544444444 6666666665543 33
Q ss_pred hhcCCCCCcEEEccCcccccCC-CcccCCCCCCCEEEcCCCCCC
Q 002055 265 WVFGLSHLLFLNLGYNNFHGPI-PEGLQSLTSLKHLDLSFNHFN 307 (974)
Q Consensus 265 ~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 307 (974)
.+.++++|+.||+++|-+.+.- -..++.+..|++|.|.+|.+.
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4555666666666666554321 112344556666666666554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.5e-07 Score=102.53 Aligned_cols=110 Identities=25% Similarity=0.176 Sum_probs=71.3
Q ss_pred hhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCc-cccCCCCccEEEccCCcccccCCcccccCCC
Q 002055 584 TINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPT-SFGSLSSLVSLHLRKNRLSGTMPISLKNCTS 662 (974)
Q Consensus 584 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 662 (974)
++.-++.++.|+|++|+++... .+..|+.|++|||+.|.+. .+|. ...++. |+.|.+++|.++.. ..+.++.+
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 3444566777777777776432 5667777888888888776 3333 222333 78888888877632 24667778
Q ss_pred CCeEeccCCcccccCchhHHhhhhhhhhhhccCCccc
Q 002055 663 LMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFH 699 (974)
Q Consensus 663 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~ 699 (974)
|+.||+++|-+.+.-.-.....+..|+.|+|.+|++-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888887765433222225677788888888764
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=9.9e-08 Score=84.97 Aligned_cols=85 Identities=25% Similarity=0.342 Sum_probs=44.8
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
+.++|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.++-+||.-+|.+. +||..+---+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 44555666665 45655666666666666666665 44555555555666665555554 44444322233333344555
Q ss_pred eeeecCCC
Q 002055 865 YLTGKIPS 872 (974)
Q Consensus 865 ~l~g~iP~ 872 (974)
++.|..|.
T Consensus 157 pl~~~~~~ 164 (177)
T KOG4579|consen 157 PLGDETKK 164 (177)
T ss_pred cccccCcc
Confidence 55555444
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=3.5e-06 Score=83.93 Aligned_cols=192 Identities=23% Similarity=0.177 Sum_probs=92.2
Q ss_pred CcCCCCCCEEECCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCCC----Cc-------cccCCCCCCCEEEcCCCCc
Q 002055 118 LLDLKHLSYLDLSFNDFQGV---PIPRFIGSMGNLKYLNLSGSRFVGM----IP-------HQLGNLSSLQYLVLSRNFL 183 (974)
Q Consensus 118 l~~l~~L~~L~Ls~n~i~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p-------~~~~~l~~L~~L~Ls~n~i 183 (974)
+..+..++.+|||+|.|... .+...+.+-.+|+..+++.-. +|. ++ ..+-+|++|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34467788888888887642 123345556677777776532 222 22 2334556666666666655
Q ss_pred cccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCC-------------CcCCCCCCEE
Q 002055 184 HLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLP-------------VANFSTLTTL 250 (974)
Q Consensus 184 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------l~~l~~L~~L 250 (974)
....+. .....+..-+.|++|.+++|.+..+.... ..+-+.|++.
T Consensus 105 g~~~~e----------------------~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 105 GSEFPE----------------------ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred Ccccch----------------------HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 433222 22233334444555555555443322211 1233556666
Q ss_pred eCCCCCCCCCCCh---hhhcCCCCCcEEEccCcccccC-----CCcccCCCCCCCEEEcCCCCCCCCch----hhhhcCC
Q 002055 251 DLSHNQFDNSFVP---SWVFGLSHLLFLNLGYNNFHGP-----IPEGLQSLTSLKHLDLSFNHFNSSIP----NLLCRLT 318 (974)
Q Consensus 251 ~Ls~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~ 318 (974)
....|++...... ..+..-.+|+++.+..|.+... +-..+..+.+|+.|||.+|.++-.-. ..+...+
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 6666655331101 1122224566666666654421 01122344566666666665543211 1223344
Q ss_pred CCCEEECcCCCCCC
Q 002055 319 HLEHLSLSHNSLEG 332 (974)
Q Consensus 319 ~L~~L~L~~n~l~~ 332 (974)
.|+.|.+.+|-++.
T Consensus 243 ~lrEL~lnDClls~ 256 (388)
T COG5238 243 LLRELRLNDCLLSN 256 (388)
T ss_pred hhhhccccchhhcc
Confidence 45555555555543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=4.2e-07 Score=81.10 Aligned_cols=109 Identities=28% Similarity=0.338 Sum_probs=56.4
Q ss_pred CCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEE
Q 002055 196 FLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFL 275 (974)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 275 (974)
.+..++|+.|++-.+++....+.....|+..+|++|.+..+++..-..++.++.|++++|.+++ +|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhc
Confidence 3445666666666555555555555555556666666655555444444455555555555544 24445555555555
Q ss_pred EccCcccccCCCcccCCCCCCCEEEcCCCCCC
Q 002055 276 NLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFN 307 (974)
Q Consensus 276 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 307 (974)
+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 55555544 23344444444444444444443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=5.3e-06 Score=82.68 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=23.7
Q ss_pred cCCCCCCCEEEcCCCCccccCcccc----CCCCCCCeecCccc
Q 002055 167 LGNLSSLQYLVLSRNFLHLVNFGWL----SGLSFLEHLDFSYV 205 (974)
Q Consensus 167 ~~~l~~L~~L~Ls~n~i~~~~~~~l----~~l~~L~~L~Ls~n 205 (974)
+..+..+..++||+|.|......++ .+-.+|+..++++-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 3446777888888887766555443 33456666665543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=2.3e-06 Score=86.39 Aligned_cols=213 Identities=22% Similarity=0.192 Sum_probs=105.0
Q ss_pred CCCCCEEECcCCCCCCCch-Hhh-hcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCC
Q 002055 317 LTHLEHLSLSHNSLEGRIP-RSM-ARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLF 394 (974)
Q Consensus 317 l~~L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l 394 (974)
+..++.|.+.++.|..... ..+ ..++.++++||.+|.++.-- .+...+.++
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs---------------------------eI~~ile~l 96 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS---------------------------EIGAILEQL 96 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH---------------------------HHHHHHhcC
Confidence 3445566666666653221 122 34566777777777765421 111223455
Q ss_pred CCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCcccc---ccccCCCCCcccce
Q 002055 395 KNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLT---LKVRRDWIPPFQLI 471 (974)
Q Consensus 395 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~ 471 (974)
|.|+.|+++.|++...+...-....+|++|-|.+..+.-.-....+..++++++|+++.|.+. .+....-...+.++
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~ 176 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVL 176 (418)
T ss_pred ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhh
Confidence 666666666666654322211234466666666655543333334556666667766666322 11111111122334
Q ss_pred eEeccCCCCCC--CCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccc--cccccccccccceeec
Q 002055 472 ELGLRSCNVGS--RFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG--ELTNLTKASQLSFLRL 547 (974)
Q Consensus 472 ~L~l~~~~~~~--~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~~~~L~~L~l 547 (974)
.+....|...- ..-..-.-++++..+-+..|.+...-...-+..++.+..|+++.|++.. .+..+..+++|..|.+
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRV 256 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeec
Confidence 44443332110 0000011234556666666655543333334445556667777777653 2235666677777777
Q ss_pred cCccCCCCC
Q 002055 548 MANNLSGPL 556 (974)
Q Consensus 548 ~~n~l~~~~ 556 (974)
+++.+...+
T Consensus 257 ~~~Pl~d~l 265 (418)
T KOG2982|consen 257 SENPLSDPL 265 (418)
T ss_pred cCCcccccc
Confidence 777665443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=4.9e-05 Score=83.04 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=28.8
Q ss_pred cccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCC
Q 002055 609 WMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGEN 671 (974)
Q Consensus 609 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 671 (974)
+..+..++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+. ++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 334566777777777655 4441 123566666665443334443321 34445555444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.1e-05 Score=58.71 Aligned_cols=36 Identities=31% Similarity=0.547 Sum_probs=16.3
Q ss_pred CCCEEEccCceeeeeccccccccCCCCEEECCCCccc
Q 002055 807 ALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFT 843 (974)
Q Consensus 807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 843 (974)
+|++|++++|+|+ .+|..+++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444455555444 34444444555555555555444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=3.4e-05 Score=74.08 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEE
Q 002055 147 GNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVEL 226 (974)
Q Consensus 147 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 226 (974)
.+...+||++|.+... +.|..+++|.+|.+++|+|+.+.+..-..+++|+.|.|.+|.+..+.+.. .+..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCcccee
Confidence 3556677777765432 34666677777777777777777665555666666666666666554321 22345555555
Q ss_pred EcCCCCCCCCCC---CCCcCCCCCCEEeCCCC
Q 002055 227 DLSNCQLHIFPP---LPVANFSTLTTLDLSHN 255 (974)
Q Consensus 227 ~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n 255 (974)
.+-+|.++.... -.+..+++|++||+..-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 555555544322 23344555555555443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.3e-05 Score=56.89 Aligned_cols=37 Identities=43% Similarity=0.695 Sum_probs=32.5
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCeeecccCeee
Q 002055 830 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 867 (974)
Q Consensus 830 ~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~ 867 (974)
++|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 68888999999999999999987
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.4e-05 Score=94.95 Aligned_cols=112 Identities=20% Similarity=0.282 Sum_probs=51.3
Q ss_pred CCCCCEEeCCCCCCCCC-CccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCc
Q 002055 146 MGNLKYLNLSGSRFVGM-IPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLV 224 (974)
Q Consensus 146 l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 224 (974)
||.|++|.+++-.+... .-....++++|..||+|+.+++.+ ..++.+++|++|.+.+-.+....++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l----------- 213 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL----------- 213 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH-----------
Confidence 45555555554333211 111223445555555555554444 3344455555555444444433222
Q ss_pred EEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCC--C---hhhhcCCCCCcEEEccCccccc
Q 002055 225 ELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSF--V---PSWVFGLSHLLFLNLGYNNFHG 284 (974)
Q Consensus 225 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~l~~ 284 (974)
..+.++++|++||+|..+..... + .+.-..+++|+.||.+++.+..
T Consensus 214 --------------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 214 --------------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred --------------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 23444555666666554433211 0 0111246667777777665554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00016 Score=79.21 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=73.5
Q ss_pred hhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCC
Q 002055 584 TINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSL 663 (974)
Q Consensus 584 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 663 (974)
.+..+..++.|++++|.++ .+|. -..+|++|+++++.-...+|..+ .++|++|++++|.....+|. +|
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 3455678888999988776 4452 12469999998866555777655 36899999999843335553 57
Q ss_pred CeEeccCCcccccCchhHHhhhhhhhhhhccCCccc--cccCccccCCCCCcEEEccCCcCC
Q 002055 664 MTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFH--GLLPTKLCDLAFLQILDLADNNLS 723 (974)
Q Consensus 664 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (974)
+.|+++.+... .++ ..+++|+.|.+.+++.. ..+|.. -.++|+.|++++|...
T Consensus 115 e~L~L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 115 RSLEIKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred ceEEeCCCCCc-ccc----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 77888766542 121 13455666766543311 011110 1146777777777644
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=7.6e-05 Score=71.74 Aligned_cols=62 Identities=26% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcc
Q 002055 220 LPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNN 281 (974)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 281 (974)
+++|..|.+++|+|+.+.+.--.-+++|..|.|.+|++........+..+++|++|.+-+|.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 34444444444444444443333334444444444444322112223334444444444443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.57 E-value=2e-06 Score=90.95 Aligned_cols=285 Identities=19% Similarity=0.143 Sum_probs=126.4
Q ss_pred CCCCEEECCCCC-CCCCCCCcccCCCCCCCEEeCCCCC-CCCCCcccc-CCCCCCCEEEcCCC-CccccCcc-ccCCCCC
Q 002055 122 KHLSYLDLSFND-FQGVPIPRFIGSMGNLKYLNLSGSR-FVGMIPHQL-GNLSSLQYLVLSRN-FLHLVNFG-WLSGLSF 196 (974)
Q Consensus 122 ~~L~~L~Ls~n~-i~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~Ls~n-~i~~~~~~-~l~~l~~ 196 (974)
..|+.|.++++. ....++-.+...++++++|++.+|. ++...-..+ ..+++|++|++..| .+++.... .-.++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357777777774 2222344455677777777777774 222111122 35677777777663 34433333 2245666
Q ss_pred CCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCC--CCCcCCCCCCEEeCCCC-CCCCCCChhhhcCCCCCc
Q 002055 197 LEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPP--LPVANFSTLTTLDLSHN-QFDNSFVPSWVFGLSHLL 273 (974)
Q Consensus 197 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~ 273 (974)
|++|+++.+....-.........+..++.+.+++|.-.+... ..-..+..+.++++..+ .+++..+...-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 666666655433222222223334444455444432111100 00012223333443332 233322122223455566
Q ss_pred EEEccCcccccCCC--cccCCCCCCCEEEcCCCCC-CCCchhhh-hcCCCCCEEECcCCCCCC--CchHhhhcCCCCcEE
Q 002055 274 FLNLGYNNFHGPIP--EGLQSLTSLKHLDLSFNHF-NSSIPNLL-CRLTHLEHLSLSHNSLEG--RIPRSMARLCNLKRL 347 (974)
Q Consensus 274 ~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L 347 (974)
+|+.+++...+..+ .--.+..+|+.|.++.++. +..--..+ .+.+.|+.+++..+.... .+..--.+++.|++|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 66665554321110 1113445666666665542 11111111 234556666655554221 111122334555555
Q ss_pred EccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCC-CCcccccCCCCCCCEEEc
Q 002055 348 YLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIV-GLVPQSFGRLSSLRVLQL 426 (974)
Q Consensus 348 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L 426 (974)
.+++|....... .+.+ ...-..+..|..+.+++++.. +..-+.+..+++|+.+++
T Consensus 378 slshce~itD~g-------------i~~l-----------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 378 SLSHCELITDEG-------------IRHL-----------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred Chhhhhhhhhhh-------------hhhh-----------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 555553321110 0000 011123456667777776543 233344566677777777
Q ss_pred cCCc
Q 002055 427 YRNK 430 (974)
Q Consensus 427 ~~n~ 430 (974)
.+++
T Consensus 434 ~~~q 437 (483)
T KOG4341|consen 434 IDCQ 437 (483)
T ss_pred echh
Confidence 7665
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=5.4e-05 Score=76.10 Aligned_cols=118 Identities=25% Similarity=0.253 Sum_probs=80.1
Q ss_pred cccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCC--CCCCCCccccCCCCCCCEEEcCCCCcccc-C
Q 002055 111 VGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGS--RFVGMIPHQLGNLSSLQYLVLSRNFLHLV-N 187 (974)
Q Consensus 111 ~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~ 187 (974)
.|.+..-.-.+..|+.|++.+..++.. ..+-.|++|++|.++.| .+++.++....++++|++|++++|+|..+ .
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 344444445566677777777766643 33456889999999999 66766666667789999999999998853 2
Q ss_pred ccccCCCCCCCeecCccccCCCcchhH-HhhcCCCCCcEEEcCCC
Q 002055 188 FGWLSGLSFLEHLDFSYVNLSKASDWL-LVTHMLPSLVELDLSNC 231 (974)
Q Consensus 188 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L~~n 231 (974)
...+..+.+|..|++..|..+...+.. ..+..+++|++||-...
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 335667778888888888777764332 22344566666654443
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.46 E-value=1.5e-05 Score=84.62 Aligned_cols=280 Identities=21% Similarity=0.123 Sum_probs=128.4
Q ss_pred CCCCEEeCCCCCCCCCCc--cccCCCCCCCEEEcCCCC-ccccCcccc-CCCCCCCeecCccccCCCcchhHHhhcCCCC
Q 002055 147 GNLKYLNLSGSRFVGMIP--HQLGNLSSLQYLVLSRNF-LHLVNFGWL-SGLSFLEHLDFSYVNLSKASDWLLVTHMLPS 222 (974)
Q Consensus 147 ~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~ 222 (974)
..|+.|.++++.-.+.-+ ..-.+++++++|++.++. +++.....+ ..+++|++|++..+..-+..........+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468888899886544322 233567888888887775 222222222 3467777777766432222122223344566
Q ss_pred CcEEEcCCCC-CCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccC--CCcccCCCCCCCEE
Q 002055 223 LVELDLSNCQ-LHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGP--IPEGLQSLTSLKHL 299 (974)
Q Consensus 223 L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L 299 (974)
|+++++++|. +++ ..+.....++..++.+.+.+|.-.+. +-..=+.+..+.++
T Consensus 218 L~~lNlSwc~qi~~------------------------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG------------------------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred HHHhhhccCchhhc------------------------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 6666666553 222 11122333444444444444321110 00001223445555
Q ss_pred EcCCCC-CCCCc-hhhhhcCCCCCEEECcCCCCC-CCchHhh-hcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCce
Q 002055 300 DLSFNH-FNSSI-PNLLCRLTHLEHLSLSHNSLE-GRIPRSM-ARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLES 375 (974)
Q Consensus 300 ~L~~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~-~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~ 375 (974)
++..|. ++..- -..-..+..|+.|+.+++... ...-..+ .+..+|+.|.+++++.-.... ...++..-..|+.
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~---ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG---FTMLGRNCPHLER 350 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh---hhhhhcCChhhhh
Confidence 554443 22111 011123556677776665432 2222222 345667777777665211110 0022222222666
Q ss_pred eeCCCCCCc--ccccccccCCCCCCEEeccCccC-CCCc----ccccCCCCCCCEEEccCCcccceechhhhcCCCCCcE
Q 002055 376 LVLPNSSIF--GHLTDQIGLFKNLDSLDLSNNSI-VGLV----PQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSV 448 (974)
Q Consensus 376 L~L~~n~~~--~~~p~~l~~l~~L~~L~L~~n~l-~~~~----p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 448 (974)
+++.++... +.+...-.+++.|+.+.+++|.. ++.. ...-..+..|+.+.|+++.....-...++..+++|+.
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 666655432 12222234566777777776643 2220 1111234556666666666543322234445555555
Q ss_pred EEcCC
Q 002055 449 FLVGE 453 (974)
Q Consensus 449 L~l~~ 453 (974)
+++-+
T Consensus 431 i~l~~ 435 (483)
T KOG4341|consen 431 IELID 435 (483)
T ss_pred eeeec
Confidence 54443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=7.1e-05 Score=89.12 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=9.5
Q ss_pred CCCCcEEEccCCCCCCc
Q 002055 341 LCNLKRLYLSGAKLNQE 357 (974)
Q Consensus 341 l~~L~~L~L~~n~l~~~ 357 (974)
+|+|+.||.++..+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEE 265 (699)
T ss_pred CccccEEecCCcchhHH
Confidence 55666666665555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00043 Score=69.79 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=35.1
Q ss_pred CCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCC--CccccCccccCCCCCCCeecCccccCCC
Q 002055 139 IPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRN--FLHLVNFGWLSGLSFLEHLDFSYVNLSK 209 (974)
Q Consensus 139 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~Ls~n~l~~ 209 (974)
+......+..|+.|.+.+..++.. ..|-.|++|++|+++.| ++..........+++|++|++++|++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 333344456666666666655532 23445666677777666 3332222223334555555555555443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.57 E-value=0.0038 Score=58.25 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=10.8
Q ss_pred cCCCCCCCEEEcCCCCccccCccccCCCCCCCeecC
Q 002055 167 LGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDF 202 (974)
Q Consensus 167 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 202 (974)
|.++++|+.+.+.. .+..+....|.++++|+.+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~ 42 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINF 42 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccc
Confidence 33444444444432 233333344444444444433
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.46 E-value=0.0048 Score=57.55 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=32.4
Q ss_pred CcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCC
Q 002055 118 LLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFL 197 (974)
Q Consensus 118 l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 197 (974)
|.++++|+.+.+.. .+..+ -...+..+++|+.+.+.++ +.......|.++++|+.+.+.. .+..++...|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44455555555553 23322 2233455555555555543 3333334455555555555543 3444444445545555
Q ss_pred CeecCc
Q 002055 198 EHLDFS 203 (974)
Q Consensus 198 ~~L~Ls 203 (974)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00027 Score=71.17 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=44.6
Q ss_pred CCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCee
Q 002055 121 LKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHL 200 (974)
Q Consensus 121 l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 200 (974)
+...+.|++-+|.+.++ ....+++.|++|.|+-|+|+..-| |..|++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--------------------------l~rCtrLkEl 68 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--------------------------LQRCTRLKEL 68 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--------------------------HHHHHHHHHH
Confidence 44556666666666654 223455666666666666554322 3444455555
Q ss_pred cCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCC
Q 002055 201 DFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIF 236 (974)
Q Consensus 201 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (974)
.|..|.|.++.+ .+.+.++|+|+.|.|..|.-.+.
T Consensus 69 YLRkN~I~sldE-L~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 69 YLRKNCIESLDE-LEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHhcccccHHH-HHHHhcCchhhhHhhccCCcccc
Confidence 555555544433 23345555555555555544433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.00018 Score=72.32 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=37.5
Q ss_pred cCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccC
Q 002055 218 HMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGP 285 (974)
Q Consensus 218 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 285 (974)
..++.|++|.|+-|+|+.+.+ +..|++|++|.|..|.|.+..-...+.++++|+.|.|..|.-.+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 345556666666666555543 556666666666666665433233455666666666666655443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.00086 Score=78.72 Aligned_cols=112 Identities=28% Similarity=0.210 Sum_probs=52.4
Q ss_pred CCCCCEEeCCCCCCCCC--CccccCCCCCCCEEEcCCC--CccccC---ccccCCCCCCCeecCccccCCCcchhHHhhc
Q 002055 146 MGNLKYLNLSGSRFVGM--IPHQLGNLSSLQYLVLSRN--FLHLVN---FGWLSGLSFLEHLDFSYVNLSKASDWLLVTH 218 (974)
Q Consensus 146 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n--~i~~~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 218 (974)
++.|+.|.+..+.-... .-.....++.|+.|+++++ .+.... ......+++|+.|+++++.............
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555665555532222 1223345556666666542 111111 1133445666666666666322222333333
Q ss_pred CCCCCcEEEcCCCC-CCCCCCCC-CcCCCCCCEEeCCCCCC
Q 002055 219 MLPSLVELDLSNCQ-LHIFPPLP-VANFSTLTTLDLSHNQF 257 (974)
Q Consensus 219 ~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~Ls~n~l 257 (974)
.+++|++|.+.+|. +++..-.. ...++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 46677777666655 34332222 23345566666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.04 E-value=0.0038 Score=37.66 Aligned_cols=19 Identities=42% Similarity=0.565 Sum_probs=8.5
Q ss_pred CCEEEccCceeeeecccccc
Q 002055 808 LQSLNLSYNIFTGRIPETIG 827 (974)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~ 827 (974)
|+.|||++|+|+ .||++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 4444433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.00 E-value=0.0028 Score=38.21 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=15.0
Q ss_pred CCCEEECCCCcccccCCccccC
Q 002055 831 SLESIDFSVNKFTGEIPQSMSS 852 (974)
Q Consensus 831 ~L~~LdLs~N~l~g~iP~~l~~ 852 (974)
+|+.||||+|+++ .||.++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677778887777 67776654
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.86 E-value=0.00085 Score=78.79 Aligned_cols=133 Identities=26% Similarity=0.249 Sum_probs=65.2
Q ss_pred CCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCC-CC-CCCC---CCCCcCCCCCCEEeCCCCC-CCCCCChhhhc
Q 002055 194 LSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNC-QL-HIFP---PLPVANFSTLTTLDLSHNQ-FDNSFVPSWVF 267 (974)
Q Consensus 194 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~ 267 (974)
++.|+.|.+..+.-............++.|+.|+++++ .. .... ......+++|+.|++++.. +++..+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 55556665555533222223344455666666666652 11 1111 1233445666777776666 44443222222
Q ss_pred CCCCCcEEEccCcc-cccC-CCcccCCCCCCCEEEcCCCCCCC--CchhhhhcCCCCCEEECc
Q 002055 268 GLSHLLFLNLGYNN-FHGP-IPEGLQSLTSLKHLDLSFNHFNS--SIPNLLCRLTHLEHLSLS 326 (974)
Q Consensus 268 ~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~ 326 (974)
.+++|++|.+.++. ++.. +-.....+++|++|+++++.... .+.....++++|+.|.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 36677777766665 3322 11223456667777777665431 122333445655555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.41 E-value=0.00085 Score=76.57 Aligned_cols=39 Identities=33% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCCEEeccCccCCCCcc----cccCCCCCCCEEEccCCcccc
Q 002055 395 KNLDSLDLSNNSIVGLVP----QSFGRLSSLRVLQLYRNKLHG 433 (974)
Q Consensus 395 ~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~ 433 (974)
..+++++++.|.++.... ..+..++.++++.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 466777777777765433 334566777888888887754
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.03 E-value=0.001 Score=75.85 Aligned_cols=185 Identities=26% Similarity=0.237 Sum_probs=93.3
Q ss_pred CceEEecccccccccc-----ccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcC-Cccc
Q 002055 519 LYLLDLGHNQIHGELT-----NLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAG-MKLQ 592 (974)
Q Consensus 519 L~~L~Ls~n~l~~~~~-----~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-~~L~ 592 (974)
+..+.+.+|.+..... .+...+.|..|++++|.+. +.--..++..+... ..++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~---------------------~~g~~~l~~~l~~~~~~l~ 147 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG---------------------DEGARLLCEGLRLPQCLLQ 147 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc---------------------cHhHHHHHhhcccchHHHH
Confidence 6667777777654322 2334445555555555554 22222233333222 3445
Q ss_pred ccccccccccc----cCCcccccCCCCCeeeCCCccccc----cCCcccc----CCCCccEEEccCCccccc----CCcc
Q 002055 593 FLFLDRNILQG----NLPDCWMSYQNLMMLDLSNNKFIG----NLPTSFG----SLSSLVSLHLRKNRLSGT----MPIS 656 (974)
Q Consensus 593 ~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~----~l~~L~~L~L~~n~l~~~----~p~~ 656 (974)
+|++..|.+++ .+...+.....++.++++.|.+.. .++..+. ...++++|.+++|.++.. +...
T Consensus 148 ~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 148 TLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred HHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 55555555543 223334445556666666665521 1122222 355677777777766521 1122
Q ss_pred cccCCC-CCeEeccCCcccccCchhHHh---hh-hhhhhhhccCCccccccC----ccccCCCCCcEEEccCCcCCC
Q 002055 657 LKNCTS-LMTLDVGENEFFGNIPSWFGE---MF-SIMVFLILRSNYFHGLLP----TKLCDLAFLQILDLADNNLSG 724 (974)
Q Consensus 657 l~~l~~-L~~L~Ls~N~l~~~~p~~~~~---~~-~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~g 724 (974)
+...++ +..|++..|++.+..-..+.. .+ ..++.++++.|.++..-. ..+..++.++.+.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 334444 566777777764332111111 12 345677777777765433 344556677888888887653
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.22 E-value=0.01 Score=58.58 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=72.1
Q ss_pred ceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeec
Q 002055 782 NLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNL 861 (974)
Q Consensus 782 ~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~l 861 (974)
...+.||+|.|++- ..-..+.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.+++.++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34578999999986 34455677888999999999998 78999999999999999999988 78999999999999999
Q ss_pred ccCeee
Q 002055 862 SNNYLT 867 (974)
Q Consensus 862 s~N~l~ 867 (974)
-.|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999865
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.55 E-value=0.14 Score=28.60 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=3.3
Q ss_pred CCEEEccCcee
Q 002055 808 LQSLNLSYNIF 818 (974)
Q Consensus 808 L~~L~Ls~N~l 818 (974)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.26 E-value=0.16 Score=28.39 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=7.3
Q ss_pred CCCCEEECCCCccc
Q 002055 830 RSLESIDFSVNKFT 843 (974)
Q Consensus 830 ~~L~~LdLs~N~l~ 843 (974)
++|+.|||++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35677777777765
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.23 E-value=0.08 Score=51.63 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCC-CCCCCCCCCcCCCCCCEEe
Q 002055 173 LQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQ-LHIFPPLPVANFSTLTTLD 251 (974)
Q Consensus 173 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 251 (974)
++.+|-++..|..+....+..++.++.|.+.++.--+.......-+-.++|+.|++++|. |++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444444444444444444444444332222222222234555555555542 4444333444444444444
Q ss_pred CC
Q 002055 252 LS 253 (974)
Q Consensus 252 Ls 253 (974)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.29 E-value=0.55 Score=29.51 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=9.6
Q ss_pred cCCCCEEECCCCccc
Q 002055 829 MRSLESIDFSVNKFT 843 (974)
Q Consensus 829 l~~L~~LdLs~N~l~ 843 (974)
+++|+.|+|++|+++
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 355666666666666
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.29 E-value=0.55 Score=29.51 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=9.6
Q ss_pred cCCCCEEECCCCccc
Q 002055 829 MRSLESIDFSVNKFT 843 (974)
Q Consensus 829 l~~L~~LdLs~N~l~ 843 (974)
+++|+.|+|++|+++
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 355666666666666
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.54 E-value=0.67 Score=29.09 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=10.0
Q ss_pred CCCCEEEcCCCCccccCccc
Q 002055 171 SSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 171 ~~L~~L~Ls~n~i~~~~~~~ 190 (974)
++|++|+|++|.+..++...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555544443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.54 E-value=0.67 Score=29.09 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=10.0
Q ss_pred CCCCEEEcCCCCccccCccc
Q 002055 171 SSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 171 ~~L~~L~Ls~n~i~~~~~~~ 190 (974)
++|++|+|++|.+..++...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555544443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.25 E-value=0.24 Score=30.46 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=6.5
Q ss_pred CCCCEEECCCCccccc
Q 002055 830 RSLESIDFSVNKFTGE 845 (974)
Q Consensus 830 ~~L~~LdLs~N~l~g~ 845 (974)
++|++|||++|+++..
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3444555555544433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.88 E-value=0.24 Score=30.50 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=10.6
Q ss_pred cCCCEEEccCceeeeeccc
Q 002055 806 KALQSLNLSYNIFTGRIPE 824 (974)
Q Consensus 806 ~~L~~L~Ls~N~l~g~ip~ 824 (974)
++|++|+|++|+|++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4667777777777655443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.05 E-value=13 Score=41.51 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=33.3
Q ss_pred CCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhh---cCCCCcEEEccCCCCCCcchh
Q 002055 292 SLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMA---RLCNLKRLYLSGAKLNQEISE 360 (974)
Q Consensus 292 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~ 360 (974)
.-+.+++++++.|.+....|..+..-. --+.++.|..+...-..+. .=..+.+++++.|.....+|.
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 345678888888887665554432211 1155555555432111110 012355566666665555555
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.26 E-value=0.039 Score=54.60 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=25.9
Q ss_pred CCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCC
Q 002055 293 LTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAK 353 (974)
Q Consensus 293 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 353 (974)
++.|+.|+++.|.+. ..|..++.+..++.+++..|..+ ..|.++++.+.++.+++.++.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 334444444444433 33444444444444444444433 344444444444444444444
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.50 E-value=0.65 Score=45.50 Aligned_cols=83 Identities=27% Similarity=0.243 Sum_probs=43.6
Q ss_pred CCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCC
Q 002055 319 HLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLD 398 (974)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 398 (974)
.++.+|-++..|..+--+.+..++.++.|.+.+|.--+..- -..++. -.++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~---L~~l~~------------------------~~~~L~ 154 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC---LERLGG------------------------LAPSLQ 154 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH---HHHhcc------------------------cccchh
Confidence 35566666666555555556666666666666654322110 001111 124666
Q ss_pred EEeccCc-cCCCCcccccCCCCCCCEEEccC
Q 002055 399 SLDLSNN-SIVGLVPQSFGRLSSLRVLQLYR 428 (974)
Q Consensus 399 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~ 428 (974)
.|++++| .|++..-..+..+++|+.|.+.+
T Consensus 155 ~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 155 DLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred eeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 6666655 45554445566666666666654
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.54 E-value=3.4 Score=26.04 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=10.8
Q ss_pred cCCCCEEECCCCccc
Q 002055 829 MRSLESIDFSVNKFT 843 (974)
Q Consensus 829 l~~L~~LdLs~N~l~ 843 (974)
+++|+.|+|++|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.64 E-value=4.2 Score=25.56 Aligned_cols=12 Identities=50% Similarity=0.625 Sum_probs=6.1
Q ss_pred CCEEEccCceee
Q 002055 808 LQSLNLSYNIFT 819 (974)
Q Consensus 808 L~~L~Ls~N~l~ 819 (974)
|+.|+.++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444555555554
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.91 E-value=8 Score=24.79 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=8.9
Q ss_pred CCCCEEECCCCccc
Q 002055 830 RSLESIDFSVNKFT 843 (974)
Q Consensus 830 ~~L~~LdLs~N~l~ 843 (974)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777776664
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.41 E-value=7.2 Score=44.37 Aligned_cols=63 Identities=30% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCCCcEEEcCCCCCCCCCC--CCCcCCCCCCEEeCCCC--CCCCCCChhhhc--CCCCCcEEEccCccccc
Q 002055 219 MLPSLVELDLSNCQLHIFPP--LPVANFSTLTTLDLSHN--QFDNSFVPSWVF--GLSHLLFLNLGYNNFHG 284 (974)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n--~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~ 284 (974)
+.+.+..++|++|++..+.. ..-...++|+.|+|++| .+.. ..++. +...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~---~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS---ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc---hhhhhhhcCCCHHHeeecCCcccc
Confidence 34555555555555443322 11123355666666666 2222 12222 22346677777776654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.55 E-value=2.3e+02 Score=32.22 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=11.0
Q ss_pred CCCCEEeCCCCCCCCCCccc
Q 002055 147 GNLKYLNLSGSRFVGMIPHQ 166 (974)
Q Consensus 147 ~~L~~L~Ls~n~l~~~~p~~ 166 (974)
+.+++++++.|.+....|..
T Consensus 165 pr~r~~dls~npi~dkvpih 184 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIH 184 (553)
T ss_pred chhhhhccCCCcccccCCcc
Confidence 34566666666655554433
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.09 E-value=21 Score=40.74 Aligned_cols=14 Identities=36% Similarity=0.245 Sum_probs=7.2
Q ss_pred CCCcEEEcCCCCCC
Q 002055 221 PSLVELDLSNCQLH 234 (974)
Q Consensus 221 ~~L~~L~L~~n~l~ 234 (974)
..|++|-+.+|.+.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 34555555555544
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.89 E-value=30 Score=32.43 Aligned_cols=13 Identities=23% Similarity=0.733 Sum_probs=6.7
Q ss_pred hhhhcccceEEEE
Q 002055 957 NFLDGVGDRIVSF 969 (974)
Q Consensus 957 ~~~~~~~~~~~~~ 969 (974)
.|+|.-...+.++
T Consensus 81 dfidSdGkvvtay 93 (154)
T PF04478_consen 81 DFIDSDGKVVTAY 93 (154)
T ss_pred ccccCCCcEEEEE
Confidence 5666555544433
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.44 E-value=42 Score=29.14 Aligned_cols=6 Identities=0% Similarity=0.390 Sum_probs=2.3
Q ss_pred eeehhh
Q 002055 928 VSVALG 933 (974)
Q Consensus 928 ~~~~~~ 933 (974)
.+++++
T Consensus 69 agi~vg 74 (96)
T PTZ00382 69 AGISVA 74 (96)
T ss_pred EEEEee
Confidence 333333
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.12 E-value=51 Score=20.51 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=6.0
Q ss_pred CCCCEEeCCCC
Q 002055 147 GNLKYLNLSGS 157 (974)
Q Consensus 147 ~~L~~L~Ls~n 157 (974)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.27 E-value=39 Score=46.64 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=22.6
Q ss_pred EccCceeeeeccccccccCCCCEEECCCCccc
Q 002055 812 NLSYNIFTGRIPETIGAMRSLESIDFSVNKFT 843 (974)
Q Consensus 812 ~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 843 (974)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57777777555566777777777777777654
No 99
>PRK00523 hypothetical protein; Provisional
Probab=22.95 E-value=34 Score=27.52 Aligned_cols=21 Identities=14% Similarity=-0.143 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhcccchhhhHh
Q 002055 937 GFWCFIGPLLVNRRWRYKYCN 957 (974)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ 957 (974)
.++++++.+|+.|++..+|+.
T Consensus 15 li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 15 LIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666566554
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.39 E-value=37 Score=30.81 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=9.9
Q ss_pred eeeehhhHHHHHHHHHhh
Q 002055 927 YVSVALGFVVGFWCFIGP 944 (974)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~ 944 (974)
..++++|.++|+++++++
T Consensus 66 i~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHH
Confidence 345556666666555443
Done!