Query 002055
Match_columns 974
No_of_seqs 952 out of 5783
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-91 5.5E-96 863.8 50.7 704 38-901 9-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-71 4E-76 686.8 46.3 619 114-869 92-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7.6E-58 2.6E-62 559.1 50.0 608 125-872 7-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-56 7.6E-61 546.1 49.9 588 112-847 17-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.1E-53 3.6E-58 515.3 41.5 531 113-872 26-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.4E-52 4.8E-57 505.5 41.7 529 82-847 33-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-52 8.7E-57 503.2 35.6 540 197-872 13-563 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 7E-52 2.4E-56 515.9 38.3 565 199-901 8-591 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-51 6E-56 495.9 37.1 537 126-847 15-562 (606)
10 4eco_A Uncharacterized protein 100.0 4.1E-53 1.4E-57 509.3 18.7 510 38-868 27-601 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 1.4E-49 4.6E-54 485.1 31.2 80 36-137 264-363 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-47 4.1E-52 477.8 38.7 527 121-727 23-564 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.6E-47 1.2E-51 455.1 35.4 501 123-874 29-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.3E-46 7.7E-51 448.2 32.1 500 81-848 27-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-45 8.4E-50 436.9 30.8 482 113-727 19-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-45 7.3E-50 437.4 28.1 492 246-873 6-516 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 5.6E-45 1.9E-49 430.5 25.0 460 273-872 3-486 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-43 1.3E-47 426.1 35.7 526 221-871 52-584 (635)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-41 4.3E-46 412.8 40.5 520 122-845 52-582 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 5.6E-43 1.9E-47 413.4 26.1 464 224-847 3-485 (520)
21 4eco_A Uncharacterized protein 100.0 4.2E-44 1.4E-48 430.9 16.0 252 587-887 328-597 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 7.4E-43 2.5E-47 425.8 22.8 123 328-457 435-586 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.8E-42 2E-46 408.1 24.4 228 588-872 275-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-40 5.8E-45 395.4 26.5 472 222-848 32-515 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.6E-39 5.5E-44 373.7 17.0 263 488-872 149-416 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 5.8E-39 2E-43 369.0 17.9 396 373-891 13-410 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.3E-37 4.5E-42 361.0 28.0 381 395-876 30-417 (455)
28 1ogq_A PGIP-2, polygalacturona 100.0 7E-39 2.4E-43 350.8 13.1 293 37-382 2-302 (313)
29 3v47_A TOLL-like receptor 5B a 100.0 2.1E-36 7.3E-41 350.9 28.9 387 273-728 13-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-36 1.6E-40 345.2 26.8 229 139-452 34-262 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7E-35 2.4E-39 335.3 33.2 272 112-436 32-303 (457)
32 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-35 5.7E-40 324.0 18.7 258 589-898 50-312 (313)
33 1o6v_A Internalin A; bacterial 100.0 1.4E-32 4.9E-37 318.9 35.0 343 82-481 46-388 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 9.2E-34 3.2E-38 330.5 22.4 211 588-871 127-337 (477)
35 1o6v_A Internalin A; bacterial 100.0 2.3E-32 7.8E-37 317.2 33.9 347 120-532 44-390 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 1.6E-32 5.3E-37 320.2 29.4 312 113-435 25-336 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 6.7E-32 2.3E-36 306.0 25.8 314 119-461 42-356 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.8E-36 321.1 22.5 330 491-893 50-384 (597)
39 3oja_B Anopheles plasmodium-re 100.0 5.7E-31 1.9E-35 314.9 26.7 313 120-460 49-361 (597)
40 3o6n_A APL1; leucine-rich repe 100.0 2.8E-31 9.5E-36 300.9 22.1 329 490-891 43-376 (390)
41 4fmz_A Internalin; leucine ric 100.0 4.2E-30 1.4E-34 286.5 31.2 306 119-457 41-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 1.3E-29 4.5E-34 282.4 31.0 303 82-432 44-346 (347)
43 4fcg_A Uncharacterized protein 100.0 3.2E-31 1.1E-35 291.7 14.7 279 37-355 23-314 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-33 2E-37 322.5 -1.6 362 395-845 3-413 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-29 1.8E-33 275.4 24.4 291 122-455 33-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.9E-28 6.6E-33 270.7 26.7 269 148-454 53-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 8.8E-32 3E-36 312.6 -1.4 395 221-677 3-443 (461)
48 1xku_A Decorin; proteoglycan, 100.0 1.5E-27 5.2E-32 263.5 29.4 275 122-430 52-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 6E-28 2E-32 266.9 25.9 281 113-430 47-331 (332)
50 4fcg_A Uncharacterized protein 100.0 9.3E-29 3.2E-33 272.0 14.8 226 588-866 80-313 (328)
51 2z80_A TOLL-like receptor 2, v 99.9 4E-28 1.4E-32 270.8 14.0 279 540-872 31-319 (353)
52 3ogk_B Coronatine-insensitive 99.9 3.3E-30 1.1E-34 309.4 -3.3 425 114-548 65-546 (592)
53 3ogk_B Coronatine-insensitive 99.9 1.5E-28 5E-33 295.1 7.5 61 611-671 376-446 (592)
54 2z66_A Variable lymphocyte rec 99.9 2.6E-27 9E-32 258.7 16.6 233 589-871 28-265 (306)
55 2z66_A Variable lymphocyte rec 99.9 1.9E-27 6.6E-32 259.7 14.7 276 543-872 10-292 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 2.1E-26 7.3E-31 256.8 19.6 284 117-436 26-318 (353)
57 1wwl_A Monocyte differentiatio 99.9 3.8E-28 1.3E-32 265.6 4.5 256 538-869 41-311 (312)
58 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.6E-30 259.2 23.7 236 113-356 68-304 (452)
59 3zyi_A Leucine-rich repeat-con 99.9 7.8E-26 2.7E-30 261.1 21.5 231 590-871 76-307 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-26 6.6E-31 248.9 15.0 228 593-872 15-243 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 9.1E-26 3.1E-30 259.6 21.1 232 589-871 64-296 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 2E-26 7E-31 248.7 14.4 235 589-873 32-267 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 254.5 24.0 236 113-356 57-293 (440)
64 1wwl_A Monocyte differentiatio 99.9 4.1E-27 1.4E-31 257.5 6.6 247 587-891 41-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-26 4.5E-31 254.1 5.7 225 585-872 54-281 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-25 1.9E-29 260.1 19.4 285 60-437 12-302 (622)
67 3oja_A Leucine-rich immune mol 99.9 8E-26 2.7E-30 262.3 11.9 221 588-871 33-255 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-25 4.9E-30 245.8 11.3 243 563-872 12-256 (317)
69 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.8E-30 260.3 10.3 236 560-862 33-270 (487)
70 2p1m_B Transport inhibitor res 99.9 1.4E-26 4.9E-31 277.9 2.0 388 393-867 103-519 (594)
71 2z62_A TOLL-like receptor 4, v 99.9 2.1E-24 7.1E-29 231.8 17.7 211 613-873 28-243 (276)
72 2o6q_A Variable lymphocyte rec 99.9 3.4E-23 1.1E-27 221.4 23.2 218 67-332 2-219 (270)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-22 4.4E-27 239.8 29.4 264 122-463 40-303 (622)
74 2p1m_B Transport inhibitor res 99.9 4.8E-26 1.6E-30 273.3 -1.0 386 292-723 103-519 (594)
75 3rfs_A Internalin B, repeat mo 99.9 5.1E-24 1.7E-28 227.9 11.1 223 589-873 19-241 (272)
76 2ca6_A RAN GTPase-activating p 99.9 3.5E-25 1.2E-29 250.3 1.2 243 581-871 24-320 (386)
77 2z62_A TOLL-like receptor 4, v 99.9 3.2E-23 1.1E-27 222.5 15.3 212 590-847 29-241 (276)
78 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.3E-27 216.2 17.9 206 591-872 18-223 (270)
79 3rfs_A Internalin B, repeat mo 99.9 3.7E-23 1.3E-27 221.2 12.0 208 587-854 39-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.7E-27 216.8 16.6 206 609-870 6-211 (290)
81 3goz_A Leucine-rich repeat-con 99.9 9.7E-24 3.3E-28 235.9 4.8 256 566-869 3-299 (362)
82 4glp_A Monocyte differentiatio 99.9 6.3E-23 2.2E-27 224.0 10.4 235 562-868 65-308 (310)
83 3goz_A Leucine-rich repeat-con 99.9 1.7E-23 5.6E-28 234.0 3.8 248 561-851 22-305 (362)
84 4glp_A Monocyte differentiatio 99.9 4.4E-23 1.5E-27 225.3 6.6 220 615-890 66-307 (310)
85 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 6E-28 236.3 3.0 238 561-847 32-320 (386)
86 2ast_B S-phase kinase-associat 99.9 4.9E-23 1.7E-27 228.1 6.5 249 562-872 48-311 (336)
87 3m19_A Variable lymphocyte rec 99.9 6E-22 2E-26 209.1 12.9 213 613-901 14-232 (251)
88 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.8E-25 203.5 22.2 204 117-355 5-208 (290)
89 2xwt_C Thyrotropin receptor; s 99.9 9.9E-22 3.4E-26 205.9 11.1 107 614-723 32-144 (239)
90 3m19_A Variable lymphocyte rec 99.8 2.2E-20 7.4E-25 197.2 19.7 193 67-309 2-194 (251)
91 1h6u_A Internalin H; cell adhe 99.8 3.3E-21 1.1E-25 209.8 13.2 210 592-868 22-231 (308)
92 1h6u_A Internalin H; cell adhe 99.8 5.5E-21 1.9E-25 208.1 14.9 192 588-844 40-231 (308)
93 2ast_B S-phase kinase-associat 99.8 4.6E-22 1.6E-26 220.3 5.8 271 67-393 34-315 (336)
94 2xwt_C Thyrotropin receptor; s 99.8 8.3E-21 2.8E-25 198.8 12.0 196 590-840 32-236 (239)
95 3cvr_A Invasion plasmid antige 99.8 1.8E-20 6.3E-25 218.5 12.0 188 590-854 60-254 (571)
96 2o6s_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 182.3 16.4 163 121-294 27-189 (208)
97 3cvr_A Invasion plasmid antige 99.8 2.6E-19 8.9E-24 208.8 15.2 209 61-343 34-255 (571)
98 4ay9_X Follicle-stimulating ho 99.8 3.7E-19 1.3E-23 197.5 13.8 224 589-866 30-258 (350)
99 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.7E-23 193.9 15.7 229 113-352 23-256 (350)
100 2o6s_A Variable lymphocyte rec 99.8 2.9E-18 9.8E-23 175.2 17.0 163 220-395 27-189 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 8.5E-19 2.9E-23 180.5 11.6 156 665-872 15-171 (220)
102 1dce_A Protein (RAB geranylger 99.8 9.9E-21 3.4E-25 222.3 -4.2 203 588-873 348-552 (567)
103 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 172.9 18.7 164 62-260 11-174 (229)
104 1m9s_A Internalin B; cell inva 99.7 1.5E-18 5E-23 205.0 10.8 149 562-727 22-170 (605)
105 1h6t_A Internalin B; cell adhe 99.7 1.7E-18 5.8E-23 186.6 10.2 190 590-868 25-214 (291)
106 1dce_A Protein (RAB geranylger 99.7 1.1E-20 3.8E-25 221.9 -7.9 215 560-861 348-567 (567)
107 1h6t_A Internalin B; cell adhe 99.7 2.5E-18 8.6E-23 185.2 10.0 191 561-844 24-214 (291)
108 1m9s_A Internalin B; cell inva 99.7 9.3E-18 3.2E-22 198.2 15.1 121 592-723 24-144 (605)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-17 4E-22 171.9 12.8 156 616-847 14-170 (220)
110 2v9t_B SLIT homolog 2 protein 99.7 1.4E-17 4.7E-22 171.4 12.3 155 665-871 15-169 (220)
111 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.5E-22 172.1 12.4 156 664-872 22-177 (229)
112 2xot_A Amphoterin-induced prot 99.7 9.5E-18 3.2E-22 187.0 10.1 178 616-869 21-204 (361)
113 4b8c_D Glucose-repressible alc 99.7 3E-18 1E-22 207.7 3.7 158 561-733 173-339 (727)
114 4b8c_D Glucose-repressible alc 99.7 3.8E-18 1.3E-22 206.8 4.3 222 589-871 173-408 (727)
115 1w8a_A SLIT protein; signaling 99.7 2.6E-17 8.9E-22 165.5 9.1 88 785-872 57-144 (192)
116 4ezg_A Putative uncharacterize 99.7 2.8E-17 9.4E-22 166.2 9.1 156 633-868 40-195 (197)
117 2v9t_B SLIT homolog 2 protein 99.7 7.5E-17 2.6E-21 165.9 12.2 153 616-844 14-166 (220)
118 2xot_A Amphoterin-induced prot 99.7 4.8E-17 1.6E-21 181.2 10.6 130 591-724 20-150 (361)
119 4ezg_A Putative uncharacterize 99.7 8.4E-17 2.9E-21 162.6 9.9 157 608-844 39-195 (197)
120 1xeu_A Internalin C; cellular 99.7 4.1E-17 1.4E-21 172.8 7.0 82 588-675 18-99 (263)
121 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 173.3 6.4 171 611-869 17-187 (263)
122 1w8a_A SLIT protein; signaling 99.6 2E-16 6.8E-21 159.0 9.4 132 664-847 11-143 (192)
123 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 146.0 7.2 129 685-863 16-149 (149)
124 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 147.9 7.2 83 785-867 74-160 (168)
125 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4E-19 146.0 11.5 129 691-871 15-143 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 145.1 8.7 137 637-849 24-165 (168)
127 3sb4_A Hypothetical leucine ri 99.5 4.2E-15 1.4E-19 163.3 8.4 219 588-860 100-327 (329)
128 2o6r_A Variable lymphocyte rec 99.5 1.6E-14 5.6E-19 143.0 10.0 88 785-872 55-142 (177)
129 1ds9_A Outer arm dynein; leuci 99.5 4.7E-16 1.6E-20 157.3 -3.1 150 661-866 18-184 (198)
130 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.6E-19 139.9 6.1 127 589-718 17-148 (149)
131 3sb4_A Hypothetical leucine ri 99.5 3.5E-14 1.2E-18 156.0 10.5 221 269-497 100-326 (329)
132 1ds9_A Outer arm dynein; leuci 99.5 1.6E-15 5.6E-20 153.3 -4.4 155 609-843 14-185 (198)
133 2wfh_A SLIT homolog 2 protein 99.4 9.7E-13 3.3E-17 131.9 15.2 130 543-677 13-142 (193)
134 4fdw_A Leucine rich hypothetic 99.4 4.1E-12 1.4E-16 142.4 21.1 215 120-349 111-330 (401)
135 2o6r_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 128.4 15.5 132 224-359 10-141 (177)
136 3g39_A Variable lymphocyte rec 99.4 2.6E-13 9E-18 133.0 9.2 88 785-872 33-120 (170)
137 4fdw_A Leucine rich hypothetic 99.4 3.3E-12 1.1E-16 143.2 19.3 245 116-380 130-379 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.8E-18 135.0 6.8 82 785-868 67-154 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.4 3.2E-13 1.1E-17 133.5 7.7 136 116-256 13-151 (176)
140 2r9u_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 130.3 9.2 88 785-872 36-123 (174)
141 4fs7_A Uncharacterized protein 99.3 4.4E-11 1.5E-15 134.7 19.6 62 141-204 65-126 (394)
142 4fs7_A Uncharacterized protein 99.3 5.9E-11 2E-15 133.6 20.5 310 116-452 65-374 (394)
143 3un9_A NLR family member X1; l 99.3 1.6E-13 5.4E-18 152.4 -1.9 68 784-851 185-260 (372)
144 3g39_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 117.6 12.3 95 113-210 23-117 (170)
145 2r9u_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 114.1 12.5 98 111-211 24-121 (174)
146 2ifg_A High affinity nerve gro 99.2 4.7E-11 1.6E-15 132.1 9.8 85 785-870 34-119 (347)
147 3un9_A NLR family member X1; l 99.1 3.2E-12 1.1E-16 141.8 -2.1 187 221-432 72-283 (372)
148 2ifg_A High affinity nerve gro 99.0 4.3E-10 1.5E-14 124.3 11.0 95 113-210 23-118 (347)
149 4gt6_A Cell surface protein; l 99.0 1.5E-08 5.2E-13 113.8 20.6 90 160-253 52-145 (394)
150 4gt6_A Cell surface protein; l 99.0 2.3E-08 7.9E-13 112.3 21.7 129 337-478 260-388 (394)
151 2ra8_A Uncharacterized protein 98.7 4.2E-09 1.5E-13 115.6 3.6 83 781-865 251-341 (362)
152 2ra8_A Uncharacterized protein 98.7 4.4E-09 1.5E-13 115.5 3.2 211 561-841 107-341 (362)
153 4h09_A Hypothetical leucine ri 98.6 1.8E-06 6.1E-11 96.3 21.4 301 118-453 42-342 (379)
154 4h09_A Hypothetical leucine ri 98.6 1.9E-06 6.5E-11 96.1 21.2 285 115-446 62-358 (379)
155 3rw6_A Nuclear RNA export fact 98.4 3.7E-08 1.3E-12 102.3 -0.7 66 804-871 168-237 (267)
156 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.7E-12 98.8 1.5 80 779-860 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 1.6E-07 5.6E-12 92.8 2.6 114 561-674 36-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 1E-06 3.4E-11 87.1 4.6 120 288-432 30-164 (185)
159 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.5E-10 76.9 4.5 85 270-354 61-151 (176)
160 3e4g_A ATP synthase subunit S, 97.7 7.5E-06 2.6E-10 78.6 1.3 59 147-205 61-124 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00023 7.9E-09 69.6 2.9 113 561-673 41-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.002 6.9E-08 62.9 6.3 43 314-356 66-112 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0033 1.1E-07 57.4 5.2 55 786-842 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.004 1.4E-07 56.8 5.2 59 809-869 11-70 (130)
165 2lz0_A Uncharacterized protein 42.5 30 0.001 29.1 4.8 41 163-204 12-52 (100)
166 2lz0_A Uncharacterized protein 36.1 42 0.0014 28.1 4.7 22 182-203 7-28 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-91 Score=863.81 Aligned_cols=704 Identities=32% Similarity=0.442 Sum_probs=476.6
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCceEEEEcCCCCccccCCCccccCCCcccccc---c
Q 002055 38 CLESEREALLRFKQDLQDPSYRLASWIGNRDCCAWAGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGK---V 114 (974)
Q Consensus 38 ~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~---l 114 (974)
+.++|++||++||+++.||. .+++|+.+++||.|+||+|+ .+||++|+|++. .+.|. +
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~----------------~l~g~~~~l 69 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK----------------PLNVGFSAV 69 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS----------------CCCEEHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC----------------CcCCccCcc
Confidence 45789999999999999988 89999888999999999998 689999999984 77787 8
Q ss_pred cCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcc--ccCCCCCCCEEEcCCCCccccCcccc-
Q 002055 115 NPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPH--QLGNLSSLQYLVLSRNFLHLVNFGWL- 191 (974)
Q Consensus 115 ~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~i~~~~~~~l- 191 (974)
|+++.++++|+.++++.+.+.. +|..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+....+..+
T Consensus 70 ~~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 70 SSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred ChhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence 9999999999999999998753 678899999999999999999998888 89999999999999887764433322
Q ss_pred CCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCC---CcCCCCCCEEeCCCCCCCCCCChhhhcC
Q 002055 192 SGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLP---VANFSTLTTLDLSHNQFDNSFVPSWVFG 268 (974)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 268 (974)
.++++|++|++++|.++ +..+.. +.++++|++|++++|.+++.. + +..
T Consensus 148 ~~l~~L~~L~Ls~n~l~--------------------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~ 198 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSIS--------------------------GANVVGWVLSDGCGELKHLAISGNKISGDV-D--VSR 198 (768)
T ss_dssp CCCTTCSEEECCSSCCE--------------------------EETHHHHHHTTCCTTCCEEECCSSEEESCC-B--CTT
T ss_pred ccCCCCCEEECCCCccC--------------------------CcCChhhhhhccCCCCCEEECCCCcccccC-C--ccc
Confidence 33333333333333332 222222 344555555555555554422 1 244
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEE
Q 002055 269 LSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLY 348 (974)
Q Consensus 269 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (974)
+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|.. .+++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~----- 270 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS----- 270 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTT-----
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCC-----
Confidence 55555555555555544444 555555555555555555555555555555555555555554444332 3444
Q ss_pred ccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCC-CCCCEEeccCccCCCCcccccCCCCCCCEEEcc
Q 002055 349 LSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLF-KNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLY 427 (974)
Q Consensus 349 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 427 (974)
|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..++++++|++|+++
T Consensus 271 ------------------------L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 271 ------------------------LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp ------------------------CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred ------------------------CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 5555555555555555555443 666666666666666666666666666666666
Q ss_pred CCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCC-CCCEEeCCCCCCcC
Q 002055 428 RNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQK-DLQFLDLFNSGISG 506 (974)
Q Consensus 428 ~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~Ls~n~~~~ 506 (974)
+|+++|.+|...+.++++|+.|++++|.+....+. .+..++ +|++|++++|++.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~------------------------~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE------------------------SLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT------------------------THHHHTTTCSEEECCSSEEEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH------------------------HHHhhhcCCcEEEccCCCcCC
Confidence 66666666654466666666666665555433222 222222 33333333333333
Q ss_pred CcChhHHhh-cCcCceEEecccccccccc-ccccccccceeeccCccCCCCCCCC---CCCCcEEECcCCccccccchhh
Q 002055 507 TFPNRLLKS-ASQLYLLDLGHNQIHGELT-NLTKASQLSFLRLMANNLSGPLPLI---SSNLIGLDLSGNSFSGSIFHFL 581 (974)
Q Consensus 507 ~~p~~~~~~-l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~~---~~~L~~L~Ls~n~l~~~~~~~~ 581 (974)
.+|..+... +++|++|++++|.+++.+| .+..+++|+.|++++|.+++.+|.. +++|+.|++++|++++.+|.
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-- 460 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-- 460 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--
Confidence 333322211 2334444444444443333 3344444444444444444443332 23445555555555544442
Q ss_pred HHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCC
Q 002055 582 CYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCT 661 (974)
Q Consensus 582 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 661 (974)
.+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+++++
T Consensus 461 --~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 461 --ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp --GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred --HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 344567788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCeEeccCCcccccCchhHHhhhhhhhhhhccC-Cc---------------------cccccCccccCCCCCcEEEccC
Q 002055 662 SLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRS-NY---------------------FHGLLPTKLCDLAFLQILDLAD 719 (974)
Q Consensus 662 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~-N~---------------------l~~~~p~~l~~l~~L~~L~Ls~ 719 (974)
+|+.|++++|+++|.+|.++.. ...+..+.+.. +. +.|..|..+..++.++.++++.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCEEECCCCccCCcCChHHhc-ccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 8888888888888888877763 33333333322 11 2233333333444444444444
Q ss_pred CcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCC
Q 002055 720 NNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLP 799 (974)
Q Consensus 720 N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip 799 (974)
|.++|.+|..++ .++.|+.||||+|+++|.||
T Consensus 618 ~~~~g~~~~~~~------------------------------------------------~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 618 RVYGGHTSPTFD------------------------------------------------NNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp CEEEEECCCSCS------------------------------------------------SSBCCCEEECCSSCCBSCCC
T ss_pred ceecccCchhhh------------------------------------------------ccccccEEECcCCcccccCC
Confidence 444444444433 34455899999999999999
Q ss_pred cccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcc
Q 002055 800 IGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSF 879 (974)
Q Consensus 800 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 879 (974)
.+++++++|+.|||++|+++|.||++++++++|++||||+|+++|.||.+++++++|++||+|+|+++|+||.+++|++|
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCC-CCCCCCCCCCCCCC
Q 002055 880 NASCFLGN-NLCGAPLPKNCTDE 901 (974)
Q Consensus 880 ~~~~~~~n-~lcg~~~~~~c~~~ 901 (974)
+..+|.|| +|||.|+. .|...
T Consensus 730 ~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp CGGGGCSCTEEESTTSC-CCCSC
T ss_pred CHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999 99999987 78643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-71 Score=686.76 Aligned_cols=619 Identities=28% Similarity=0.372 Sum_probs=500.8
Q ss_pred ccCcCcCCCCCCEEECCCCCCCCCCCCc--ccCCCCCCCEEeCCCCCCCCCCcccc-CCCCCCCEEEcCCCCccccCccc
Q 002055 114 VNPSLLDLKHLSYLDLSFNDFQGVPIPR--FIGSMGNLKYLNLSGSRFVGMIPHQL-GNLSSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 114 l~~~l~~l~~L~~L~Ls~n~i~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~i~~~~~~~ 190 (974)
+|+.++++++|++|||++|.+++. +|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.++...+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 458899999999999999999874 777 89999999999999999998888776 89999999999999999887766
Q ss_pred ---cCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhc
Q 002055 191 ---LSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVF 267 (974)
Q Consensus 191 ---l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 267 (974)
+.++++|++|++++|.+.+.... ..+++|++|++++|++++..+. ++++++|++|++++|.+++.. |..+.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~ 244 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAIS 244 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTT
T ss_pred hhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHh
Confidence 88999999999999999876443 6789999999999999998776 999999999999999999876 88999
Q ss_pred CCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcC-CCCCEEECcCCCCCCCchHhhhcCCCCcE
Q 002055 268 GLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRL-THLEHLSLSHNSLEGRIPRSMARLCNLKR 346 (974)
Q Consensus 268 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 346 (974)
.+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 9999999999999999888765 88999999999999998889888775 99999999999999999999999999999
Q ss_pred EEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCC-CCCEEeccCccCCCCcccccCC--CCCCCE
Q 002055 347 LYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFK-NLDSLDLSNNSIVGLVPQSFGR--LSSLRV 423 (974)
Q Consensus 347 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~--l~~L~~ 423 (974)
|++++|.+.+.+|.. .++.++. |++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+.. +++|++
T Consensus 323 L~L~~n~l~~~ip~~---~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 323 LALSSNNFSGELPMD---TLLKMRG-LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp EECCSSEEEEECCHH---HHTTCTT-CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred EECCCCcccCcCCHH---HHhcCCC-CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 999999998777762 3666666 88888888888888888888776 8888888888888877777766 778888
Q ss_pred EEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCC
Q 002055 424 LQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSG 503 (974)
Q Consensus 424 L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~ 503 (974)
|++++|.+++.+|. .+.++++|+.|++++|.+. +.+|..+..+++|++|++++|+
T Consensus 399 L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~------------------------~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 399 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS------------------------GTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp EECCSSEEEEECCG-GGGGCTTCCEEECCSSEEE------------------------SCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccccccCH-HHhcCCCCCEEECcCCccc------------------------CcccHHHhcCCCCCEEECCCCc
Confidence 88888888877776 6777777777777776654 4566667777778888888877
Q ss_pred CcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHH
Q 002055 504 ISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCY 583 (974)
Q Consensus 504 ~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~ 583 (974)
+.+.+|..+ ..+++|++|++++|++++.+|.
T Consensus 454 l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~------------------------------------------------ 484 (768)
T 3rgz_A 454 LEGEIPQEL-MYVKTLETLILDFNDLTGEIPS------------------------------------------------ 484 (768)
T ss_dssp CCSCCCGGG-GGCTTCCEEECCSSCCCSCCCG------------------------------------------------
T ss_pred ccCcCCHHH-cCCCCceEEEecCCcccCcCCH------------------------------------------------
Confidence 777766643 3345555555555555444331
Q ss_pred hhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCC
Q 002055 584 TINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSL 663 (974)
Q Consensus 584 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 663 (974)
.+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|..+..+..+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 12234445555555555555555555555666666666666655566656566666666666666666666555554444
Q ss_pred CeEeccCC----------------------cccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCc
Q 002055 664 MTLDVGEN----------------------EFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNN 721 (974)
Q Consensus 664 ~~L~Ls~N----------------------~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 721 (974)
..+++..+ .+.+..|..+. .++.++.+++..|.+.|.+|..+.++++|+.||+++|+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 44333321 24456666665 57788889999999999999999999999999999999
Q ss_pred CCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcc
Q 002055 722 LSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIG 801 (974)
Q Consensus 722 l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~ 801 (974)
++|.+|..+++++.| +.||||+|+++|.||..
T Consensus 644 l~g~ip~~l~~l~~L------------------------------------------------~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYL------------------------------------------------FILNLGHNDISGSIPDE 675 (768)
T ss_dssp CBSCCCGGGGGCTTC------------------------------------------------CEEECCSSCCCSCCCGG
T ss_pred ccccCCHHHhccccC------------------------------------------------CEEeCcCCccCCCCChH
Confidence 999999999888776 68999999999999999
Q ss_pred cccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCe-eeec
Q 002055 802 LTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY-LTGK 869 (974)
Q Consensus 802 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~-l~g~ 869 (974)
++++++|++||||+|+++|.||+.++.+++|++||||+|+++|.||.. +.+..+....+.+|+ |+|.
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 999999999999999999999999999999999999999999999975 556677777888885 6764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.6e-58 Score=559.05 Aligned_cols=608 Identities=21% Similarity=0.213 Sum_probs=421.0
Q ss_pred CEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCcc
Q 002055 125 SYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSY 204 (974)
Q Consensus 125 ~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~ 204 (974)
+.+|.++++++. +|..+. +++++|++++|.+.+..+..|+++++|++|++++|.++.+.+..|.++++|++|++++
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 456666666664 455443 5677777777777666666677777777777777666665555454444444444444
Q ss_pred ccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCccccc
Q 002055 205 VNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHG 284 (974)
Q Consensus 205 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 284 (974)
|+++++++..|.++++|++|++++|++++.. +..+..+++|++|++++|.+++
T Consensus 83 --------------------------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 83 --------------------------NELSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp --------------------------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSC
T ss_pred --------------------------CccCccChhhhccCCCCCEEECCCCccCccC-hhHccccCCCCEEECCCCcccc
Confidence 4444444445555666666666666665432 4556666666666666666666
Q ss_pred CCCcccCCCCCCCEEEcCCCCCCCCchhhhh--cCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhh
Q 002055 285 PIPEGLQSLTSLKHLDLSFNHFNSSIPNLLC--RLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEIL 362 (974)
Q Consensus 285 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 362 (974)
..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++.++.+........
T Consensus 136 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 215 (680)
T 1ziw_A 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215 (680)
T ss_dssp CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHH
T ss_pred cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHH
Confidence 6666677777777777777777766665544 34677777777777777777777777777777777776543322211
Q ss_pred hhhcccCCCCCceeeCCCCCCcccccccccCCCC--CCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhh
Q 002055 363 DIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKN--LDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHF 440 (974)
Q Consensus 363 ~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~ 440 (974)
...+. .+ +|+.|++++|.+.+..|.++..++. |++|++++|.+++..|..+..+++|++|++++|.+.+..+. .+
T Consensus 216 ~~~l~-~~-~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 292 (680)
T 1ziw_A 216 CLELA-NT-SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SL 292 (680)
T ss_dssp HHHHT-TS-CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TT
T ss_pred HHHhh-hc-cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hh
Confidence 11111 12 3777888888777777777776654 88888888888877777788888888888888888765554 67
Q ss_pred cCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCC----ccccCCCCCCEEeCCCCCCcCCcChhHHhhc
Q 002055 441 VNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFP----LWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 516 (974)
Q Consensus 441 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p----~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l 516 (974)
.++++|+.|++++|........ ..+| ..+..+++|++|++++|++.+. +...+..+
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~-------------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 352 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISL-------------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGL 352 (680)
T ss_dssp TTCTTCCEEECTTCBCCC-------------------------CCEECTTTTTTCTTCCEEECCSCCBCCC-CTTTTTTC
T ss_pred cCCCCccEEeccchhhhccccc-------------------ccccccChhhcccCCCCCEEECCCCccCCC-ChhHhccc
Confidence 7788888888876543321100 0112 1456677888888888887753 33344556
Q ss_pred CcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCccccccc
Q 002055 517 SQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFL 596 (974)
Q Consensus 517 ~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~L 596 (974)
++|++|++++|.+.+.... . ..+. . ...++|+.|++
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~----------------------~------------~~f~---------~-~~~~~L~~L~L 388 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLT----------------------N------------ETFV---------S-LAHSPLHILNL 388 (680)
T ss_dssp TTCCEEECTTCBSCCCEEC----------------------T------------TTTG---------G-GTTSCCCEEEC
T ss_pred cCCcEEECCCCchhhhhcc----------------------h------------hhhc---------c-cccCcCceEEC
Confidence 6777777776654321100 0 0000 0 01245777777
Q ss_pred ccccccccCCcccccCCCCCeeeCCCccccccCC-ccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCccc-
Q 002055 597 DRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLP-TSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFF- 674 (974)
Q Consensus 597 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 674 (974)
++|++++..|..+..+++|++|++++|++.+.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 7777777777788888888888888888887665 57788888888888888888888888888888888888888876
Q ss_pred -ccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCC
Q 002055 675 -GNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPL 753 (974)
Q Consensus 675 -~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~ 753 (974)
+.+|..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..-+
T Consensus 469 ~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~------------------- 528 (680)
T 1ziw_A 469 VDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP------------------- 528 (680)
T ss_dssp TTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-------------------
T ss_pred cccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-------------------
Confidence 56777776 678888888888888887777889999999999999998853322211000
Q ss_pred CccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCc-ccccccCCCEEEccCceeeeeccccccccCCC
Q 002055 754 NSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPI-GLTNLKALQSLNLSYNIFTGRIPETIGAMRSL 832 (974)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 832 (974)
......++.|+.|||++|+++ .+|. .++++++|+.|+|++|++++..|..+..+++|
T Consensus 529 ---------------------~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 529 ---------------------IYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp ---------------------CCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ---------------------chhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 001123455689999999999 5665 58999999999999999997777778999999
Q ss_pred CEEECCCCcccccCCcccc-CCCCCCeeecccCeeeecCCC
Q 002055 833 ESIDFSVNKFTGEIPQSMS-SLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 833 ~~LdLs~N~l~g~iP~~l~-~l~~L~~L~ls~N~l~g~iP~ 872 (974)
+.|||++|++++..|..+. .+++|+++++++|++.+.++.
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999998888887 789999999999999998874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-56 Score=546.08 Aligned_cols=588 Identities=23% Similarity=0.229 Sum_probs=423.6
Q ss_pred ccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCcccc
Q 002055 112 GKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWL 191 (974)
Q Consensus 112 ~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l 191 (974)
..+|..+. +++++|+|++|.+++. .+..++++++|++|++++|.+.+..|..|+++++|++|++++|.++.++...|
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 34665554 7899999999999985 56679999999999999999999999999999999999999999999988889
Q ss_pred CCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhc--CC
Q 002055 192 SGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVF--GL 269 (974)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~--~l 269 (974)
.++++|++|++++|.+..++.. .+..+++|++|++++|.+++..+..+.++++|++|++++|.+++.. +..+. .+
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~ 170 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNN--PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFAN 170 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSC--TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTT
T ss_pred ccCCCCCEEECCCCccCccChh--HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhcccc
Confidence 9999999999999988876532 2467888889999888888888888888888888888888887654 44443 45
Q ss_pred CCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhh---cCCCCCEEECcCCCCCCCchHhhhcCCC--C
Q 002055 270 SHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLC---RLTHLEHLSLSHNSLEGRIPRSMARLCN--L 344 (974)
Q Consensus 270 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L 344 (974)
++|++|++++|.+++..|..+..+++|+.|+++++.+.......+. ..++|++|++++|.+++..|..+..++. |
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 7888888888888877777888888888888888776532222211 3467888888888887777777776644 7
Q ss_pred cEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCC-----ccc----cc
Q 002055 345 KRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGL-----VPQ----SF 415 (974)
Q Consensus 345 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~----~l 415 (974)
++|++++|.+.+..+. .++.++. |++|++++|.+.+..|..+..+++|++|++++|...+. +|. .+
T Consensus 251 ~~L~Ls~n~l~~~~~~----~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGND----SFAWLPQ-LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CEEECTTSCCCEECTT----TTTTCTT-CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CEEECCCCCcCccCcc----cccCccc-ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 7777777777665555 4455555 66777776666666666666666677776666544321 121 45
Q ss_pred CCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCcccc--CCCC
Q 002055 416 GRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLY--SQKD 493 (974)
Q Consensus 416 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~--~~~~ 493 (974)
..+++|++|++++|.+++..+ ..+.++++|+.|++++|.+...... ...+. ..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~----------------------~~~f~~~~~~~ 382 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLT----------------------NETFVSLAHSP 382 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEEC----------------------TTTTGGGTTSC
T ss_pred ccCCCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchhhhhcc----------------------hhhhcccccCc
Confidence 556666666666666654333 2556666666666666543221110 11111 1256
Q ss_pred CCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCcc
Q 002055 494 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSF 573 (974)
Q Consensus 494 L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l 573 (974)
|+.|++++|++.+..|. .+..+++|+.|++++|.+++.++
T Consensus 383 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--------------------------------------- 422 (680)
T 1ziw_A 383 LHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELT--------------------------------------- 422 (680)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCEEECC---------------------------------------
T ss_pred CceEECCCCCCCeEChh-hhhCCCCCCEEeCCCCcCccccC---------------------------------------
Confidence 78888888877754443 23344444444444444433221
Q ss_pred ccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCcccc--ccCCccccCCCCccEEEccCCcccc
Q 002055 574 SGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFI--GNLPTSFGSLSSLVSLHLRKNRLSG 651 (974)
Q Consensus 574 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~n~l~~ 651 (974)
. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. +.+|..++.+++|++|++++|++++
T Consensus 423 -----~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 423 -----G---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp -----S---GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred -----c---ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 0 12234556677777777777666777777888888888888876 5677888888888888888888887
Q ss_pred cCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCCh-hh
Q 002055 652 TMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPN-CI 730 (974)
Q Consensus 652 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~ 730 (974)
..|..|.++++|++|++++|++++..+..+ .+..+..+.++++|+.|++++|+++ .+|. .+
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------------~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~ 556 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHAN-----------------PGGPIYFLKGLSHLHILNLESNGFD-EIPVEVF 556 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTS-----------------TTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred CChhhhccccccCEEeCCCCCccccchhhc-----------------cCCcchhhcCCCCCCEEECCCCCCC-CCCHHHc
Confidence 777778888888888888888754322111 1112235788999999999999998 5554 45
Q ss_pred cccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCE
Q 002055 731 HNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQS 810 (974)
Q Consensus 731 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~ 810 (974)
.++++| +.|||++|++++..|..+.++++|+.
T Consensus 557 ~~l~~L------------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 557 KDLFEL------------------------------------------------KIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp TTCTTC------------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCc------------------------------------------------ceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 555554 78999999999665666789999999
Q ss_pred EEccCceeeeecccccc-ccCCCCEEECCCCcccccCC
Q 002055 811 LNLSYNIFTGRIPETIG-AMRSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 811 L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP 847 (974)
|+|++|++++.+|..++ .+++|+.|++++|.+....+
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999998888888 89999999999999997655
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-53 Score=515.31 Aligned_cols=531 Identities=21% Similarity=0.229 Sum_probs=321.3
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|..+.. ++++|+|++|.++++ .|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.++.+.+..|.
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 45544432 567777777777764 466677777777777777777776777777777777777777777666666666
Q ss_pred CCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCC
Q 002055 193 GLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHL 272 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 272 (974)
++++|++|++++|.++.+ .+..+.++++|++|++++|++++...+. +..+++|
T Consensus 103 ~l~~L~~L~L~~n~i~~l--------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 155 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSI--------------------------DFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKL 155 (606)
T ss_dssp SCTTCCEEECTTSCCSCG--------------------------GGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTC
T ss_pred ccccccEeeccccCcccC--------------------------CcchhccCCcccEEECCCCcccccCccc-ccCCccc
Confidence 666555555555555543 2333444444455555544444322122 2224444
Q ss_pred cEEEccCcccccCCCcccCCCCCCC--EEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEcc
Q 002055 273 LFLNLGYNNFHGPIPEGLQSLTSLK--HLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLS 350 (974)
Q Consensus 273 ~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (974)
++|++++|.+++..|..++.+++|+ +|++++|.+++..|..+. ..+|++|++++|. .++..+..+.+++...+.
T Consensus 156 ~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp CEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEE
T ss_pred CEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhhee
Confidence 4444444444444444444445554 455555555443333332 2345555555553 234444444444333332
Q ss_pred CCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCc
Q 002055 351 GAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNK 430 (974)
Q Consensus 351 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 430 (974)
...+.+ +....+. ......+... +|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 232 ~~~~~~----------------~~~~~i~-----~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 232 LGTFED----------------MDDEDIS-----PAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp CCCCTT----------------SCCCCCC-----GGGGGGGGGS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred chhhcc----------------ccccccC-----hhHhchhhcC-ceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 221111 1000111 1111111111 56666666666666666666666666666666666
Q ss_pred ccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcCh
Q 002055 431 LHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPN 510 (974)
Q Consensus 431 l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~ 510 (974)
++ .+|. .+..+++|++|++++|++.+..|.
T Consensus 290 l~-~lp~-------------------------------------------------~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 290 LS-ELPS-------------------------------------------------GLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CS-CCCS-------------------------------------------------SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cC-CCCh-------------------------------------------------hhcccccCCEEECccCCcCcCchh
Confidence 54 2222 223333444444444443322111
Q ss_pred hHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCc
Q 002055 511 RLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMK 590 (974)
Q Consensus 511 ~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~ 590 (974)
.+. .+++
T Consensus 320 -~~~------------------------------------------------------------------------~l~~ 326 (606)
T 3t6q_A 320 -SAS------------------------------------------------------------------------NFPS 326 (606)
T ss_dssp -CGG------------------------------------------------------------------------GCTT
T ss_pred -hhh------------------------------------------------------------------------ccCc
Confidence 111 1223
Q ss_pred ccccccccccccccCCc-ccccCCCCCeeeCCCccccccC--CccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 591 LQFLFLDRNILQGNLPD-CWMSYQNLMMLDLSNNKFIGNL--PTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 591 L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. |..++.+++|++|++++|++++..|..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 33333333333333332 2555566666666666665544 55566666666666666666666666666666666666
Q ss_pred ccCCcccccCchh-HHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCC-C--hhhcccccccccCCCc
Q 002055 668 VGENEFFGNIPSW-FGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTL-P--NCIHNLTAMATVNPFT 743 (974)
Q Consensus 668 Ls~N~l~~~~p~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i-p--~~~~~l~~l~~l~~~~ 743 (974)
+++|++.+..|.. +. .+++|+.|++++|.+++..|..+..+++|+.|++++|++++.. | ..+..++
T Consensus 407 l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~--------- 476 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG--------- 476 (606)
T ss_dssp CTTCCEECCTTCCTTT-TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT---------
T ss_pred CCCCcCCCcccchhhh-CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC---------
Confidence 6666666655443 33 5666777777777777777777888899999999999987632 2 2333333
Q ss_pred cCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecc
Q 002055 744 GNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIP 823 (974)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 823 (974)
.|+.||+++|++++.+|..++++++|+.|+|++|++++.+|
T Consensus 477 ---------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 477 ---------------------------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp ---------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred ---------------------------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 34789999999999999999999999999999999999999
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCC
Q 002055 824 ETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 824 ~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
+.+++++.| .||+++|++++.+|..+..+++|++|++++|++.|.++.
T Consensus 518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999 999999999999999999999999999999999998874
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-52 Score=505.54 Aligned_cols=529 Identities=21% Similarity=0.197 Sum_probs=372.3
Q ss_pred CceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCC
Q 002055 82 GHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVG 161 (974)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 161 (974)
.+++.|+|+++ .+.+..|.+|.++++|++|+|++|.++++ .|..|+.+++|++|+|++|++.+
T Consensus 33 ~~l~~L~Ls~n----------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 33 NSTECLEFSFN----------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TTCCEEECTTC----------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSE
T ss_pred CcCcEEEccCC----------------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccc
Confidence 47899999984 67777788999999999999999999985 78899999999999999999999
Q ss_pred CCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCC
Q 002055 162 MIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPV 241 (974)
Q Consensus 162 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 241 (974)
..|..|+++++|++|++++|.++.+.+..+.++++|++|++++|.+.. +....+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~--------------------------~~~~~~ 149 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS--------------------------IKLPKG 149 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC--------------------------CCCCTT
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc--------------------------cCcccc
Confidence 999999999999999999999998877777766666666666555544 333344
Q ss_pred cCCCCCCEEeCCCCCCCCCCChhhhcCCCCCc--EEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCC
Q 002055 242 ANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLL--FLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTH 319 (974)
Q Consensus 242 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 319 (974)
..+++|++|++++|.+++.. +..+..+++|+ +|++++|.+++..|..+. ..+|++|++++|. .++..+..+.+
T Consensus 150 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~ 224 (606)
T 3t6q_A 150 FPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKN 224 (606)
T ss_dssp CCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTT
T ss_pred cCCcccCEEEcccCcccccC-hhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccc
Confidence 45778888888888887654 77788888888 888899988877666554 4689999999886 46677777777
Q ss_pred CCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCE
Q 002055 320 LEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDS 399 (974)
Q Consensus 320 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 399 (974)
++...+....+.+ +....+....+. .+ .+.+++.|++++|.+.+..+..++.+++|++
T Consensus 225 ~~l~~l~~~~~~~-----------~~~~~i~~~~~~---------~l--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 225 STIQSLWLGTFED-----------MDDEDISPAVFE---------GL--CEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp CEEEEEECCCCTT-----------SCCCCCCGGGGG---------GG--GGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cchhheechhhcc-----------ccccccChhHhc---------hh--hcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 6655554433221 111111111110 00 0112777777777777766777888889999
Q ss_pred EeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCC
Q 002055 400 LDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCN 479 (974)
Q Consensus 400 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 479 (974)
|++++|.++. +|..+.++++|++|++++|++.+..+. .+.+++
T Consensus 283 L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~----------------------------------- 325 (606)
T 3t6q_A 283 LDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQI-SASNFP----------------------------------- 325 (606)
T ss_dssp EECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGG-CGGGCT-----------------------------------
T ss_pred EeccCCccCC-CChhhcccccCCEEECccCCcCcCchh-hhhccC-----------------------------------
Confidence 9999998884 577788889999999999988754442 344444
Q ss_pred CCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCC
Q 002055 480 VGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLI 559 (974)
Q Consensus 480 ~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 559 (974)
+|++|++++|.+.+.+|...+..+++|++|++++|.+++...
T Consensus 326 -------------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------- 367 (606)
T 3t6q_A 326 -------------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC------------------------- 367 (606)
T ss_dssp -------------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE-------------------------
T ss_pred -------------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC-------------------------
Confidence 444444444444444443333334444444444443321100
Q ss_pred CCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCcc-ccCCCC
Q 002055 560 SSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTS-FGSLSS 638 (974)
Q Consensus 560 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 638 (974)
....+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|.. +..+++
T Consensus 368 ---------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 368 ---------------------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp ---------------------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred ---------------------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 0011233456666666666666666666666666666666666666554433 556666
Q ss_pred ccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEcc
Q 002055 639 LVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLA 718 (974)
Q Consensus 639 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 718 (974)
|++|++++|++++..|..+..+++|++|++++|++.+... ..+..+..+++|+.|+++
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----------------------QKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----------------------CSSCGGGGCTTCCEEECT
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----------------------ccchhhccCCCccEEECC
Confidence 6666666666666666666666666666666666543110 122456778888999999
Q ss_pred CCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecC
Q 002055 719 DNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTL 798 (974)
Q Consensus 719 ~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~i 798 (974)
+|++++..|..++.++.| +.|||++|++++.+
T Consensus 485 ~n~l~~~~~~~~~~l~~L------------------------------------------------~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMM------------------------------------------------NHVDLSHNRLTSSS 516 (606)
T ss_dssp TSCCCEECTTTTTTCTTC------------------------------------------------CEEECCSSCCCGGG
T ss_pred CCccCccChhhhccccCC------------------------------------------------CEEECCCCccCcCC
Confidence 998887777777666655 67889999999889
Q ss_pred CcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCC
Q 002055 799 PIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 799 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP 847 (974)
|..+++++.| .|+|++|++++.+|..++.+++|+.||+++|.+++..+
T Consensus 517 ~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999 99999999999889889999999999999999998665
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-52 Score=503.24 Aligned_cols=540 Identities=22% Similarity=0.179 Sum_probs=391.5
Q ss_pred CCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEE
Q 002055 197 LEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLN 276 (974)
Q Consensus 197 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 276 (974)
-++++.+++.++.+|.. -.+++++|++++|+++++++..|.++++|++|++++|.+++.. +..+.++++|++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEE
T ss_pred CCceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC-HHHhhchhhcCEeE
Confidence 35778888888887652 2378888888888888888888888888888888888887654 66778888888888
Q ss_pred ccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCC-CchHhhhcCCCCcEEEccCCCCC
Q 002055 277 LGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEG-RIPRSMARLCNLKRLYLSGAKLN 355 (974)
Q Consensus 277 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~ 355 (974)
+++|.+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 88888887778888888888888888888887666778888888888888888875 56778888888888888888776
Q ss_pred CcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCC----CCEEeccCccCCCCcccccCCCCCCCEEEccCCcc
Q 002055 356 QEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKN----LDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKL 431 (974)
Q Consensus 356 ~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 431 (974)
+..+. .++.+++ +++|++++|.+++..+..+... +|++|++++|.+
T Consensus 167 ~~~~~-----------------------------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 167 TITVN-----------------------------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp EECTT-----------------------------TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred ecChh-----------------------------hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCcc
Confidence 64443 2222222 3366777776665544444333 677777777776
Q ss_pred cceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeC-CCCCCcCCcCh
Q 002055 432 HGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDL-FNSGISGTFPN 510 (974)
Q Consensus 432 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L-s~n~~~~~~p~ 510 (974)
.+......+.+++.|+.+++..+.+.......... ...+..+..+ .++.+++ ..+.+.+.+|.
T Consensus 217 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC---------------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS
T ss_pred chhHHHHHhccccccccccccccccccCCcccccC---------------hHHhhhhhhc-cHhheeccccccccccccc
Confidence 64444446667777766666543322111000000 0000011111 2334444 44444444444
Q ss_pred hHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCc
Q 002055 511 RLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMK 590 (974)
Q Consensus 511 ~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~ 590 (974)
+..+++|+.|++++|.+.. ++.+..+++| +.|++++|.+ +.+|. + .+++
T Consensus 281 --~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L---------------------~~L~l~~n~l-~~lp~-----~-~l~~ 329 (606)
T 3vq2_A 281 --FHCLANVSAMSLAGVSIKY-LEDVPKHFKW---------------------QSLSIIRCQL-KQFPT-----L-DLPF 329 (606)
T ss_dssp --CGGGTTCSEEEEESCCCCC-CCCCCTTCCC---------------------SEEEEESCCC-SSCCC-----C-CCSS
T ss_pred --cccCCCCCEEEecCccchh-hhhccccccC---------------------CEEEcccccC-ccccc-----C-CCCc
Confidence 4445555555555555532 2234444444 4444444444 33331 1 3567
Q ss_pred ccccccccccccccCCcccccCCCCCeeeCCCcccccc--CCccccCCCCccEEEccCCcccccCCcccccCCCCCeEec
Q 002055 591 LQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGN--LPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDV 668 (974)
Q Consensus 591 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 668 (974)
|++|++++|...+.+ .+..+++|++|++++|++++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++
T Consensus 330 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF 406 (606)
T ss_dssp CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeEC
Confidence 777777777555444 466788888888888888765 47778888888888888888875 5678888888888888
Q ss_pred cCCcccccCc-hhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCC-CChhhcccccccccCCCccCc
Q 002055 669 GENEFFGNIP-SWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGT-LPNCIHNLTAMATVNPFTGNA 746 (974)
Q Consensus 669 s~N~l~~~~p-~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~l~~l~~~~~~~ 746 (974)
++|++.+..| ..+. .+++|+.|++++|++++..|..+.++++|+.|++++|++++. +|..++.+++|
T Consensus 407 ~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------- 475 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---------- 475 (606)
T ss_dssp TTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------
T ss_pred CCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC----------
Confidence 8888888777 4555 688888899999998888888899999999999999999874 67766666555
Q ss_pred cccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccc
Q 002055 747 IKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETI 826 (974)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 826 (974)
+.|||++|++++.+|..++++++|+.|+|++|++++.+|..+
T Consensus 476 --------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 476 --------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp --------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred --------------------------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 789999999999999999999999999999999999999999
Q ss_pred cccCCCCEEECCCCcccccCCccccCCC-CCCeeecccCeeeecCCC
Q 002055 827 GAMRSLESIDFSVNKFTGEIPQSMSSLT-FLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 827 ~~l~~L~~LdLs~N~l~g~iP~~l~~l~-~L~~L~ls~N~l~g~iP~ 872 (974)
+.+++|+.|||++|+++ .+|..+..++ +|++|++++|++.|.+|.
T Consensus 518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999999 7888899997 699999999999998875
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7e-52 Score=515.87 Aligned_cols=565 Identities=21% Similarity=0.206 Sum_probs=401.2
Q ss_pred eecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEcc
Q 002055 199 HLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLG 278 (974)
Q Consensus 199 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 278 (974)
..+.++++++.+|. ..++|++|+|++|.++++.+..|.++++|++|++++|...+.+.+..+.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 34445555555553 246788888888888888888888899999999998876655557778888999999999
Q ss_pred CcccccCCCcccCCCCCCCEEEcCCCCCCCCchhh--hhcCCCCCEEECcCCCCCCCch-HhhhcCCCCcEEEccCCCCC
Q 002055 279 YNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNL--LCRLTHLEHLSLSHNSLEGRIP-RSMARLCNLKRLYLSGAKLN 355 (974)
Q Consensus 279 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 355 (974)
+|.+.+..|..++++++|++|+|++|.+++.+|.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99888888888889999999999999888766654 8888999999999998887654 57888999999999998888
Q ss_pred CcchhhhhhhcccC--CCCCceeeCCCCCCcccccccccCCCC------CCEEeccCccCCCCcccccCCC---CCCCEE
Q 002055 356 QEISEILDIFSGCV--PNGLESLVLPNSSIFGHLTDQIGLFKN------LDSLDLSNNSIVGLVPQSFGRL---SSLRVL 424 (974)
Q Consensus 356 ~~~~~~~~~~~~~~--~~~L~~L~L~~n~~~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L 424 (974)
+..+. .+..+ +. |+.|+++.|.+.+..|..++.+++ |++|++++|.+++..+..+... ++++.+
T Consensus 162 ~~~~~----~l~~l~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 162 LVCEH----ELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp CCCSG----GGHHHHHCS-SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred eeCHH----HcccccCCc-cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 77666 23322 33 888888888887777766666655 8888888888777766655432 466777
Q ss_pred EccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCC--cccceeEeccCCCCCCCCCccccCCCCCCEEeCCCC
Q 002055 425 QLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIP--PFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNS 502 (974)
Q Consensus 425 ~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n 502 (974)
.++.+..... ...+.+.......+.. ..+++.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 237 ~l~~~~~~~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 237 ILAHHIMGAG----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp ECCSSCCBCS----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC
T ss_pred eccccccccc----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC
Confidence 7764433211 1112222222223332 357888888888888778888889999999999999
Q ss_pred CCcCCcChhHHhhcCcCceEEecccccccccc-ccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhh
Q 002055 503 GISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFL 581 (974)
Q Consensus 503 ~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~ 581 (974)
++.+..|. .+..+++|++|++++|.+++..+ .+.
T Consensus 301 ~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------------- 335 (844)
T 3j0a_A 301 KINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFY-------------------------------------------- 335 (844)
T ss_dssp CCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCS--------------------------------------------
T ss_pred cCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhc--------------------------------------------
Confidence 99855443 34556777777777776654433 222
Q ss_pred HHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCC
Q 002055 582 CYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCT 661 (974)
Q Consensus 582 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 661 (974)
.+++|++|++++|.+++..+..|.++++|++|++++|.+++ + ..+++|+.|++++|+++ .+|.. ..
T Consensus 336 -----~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~ 401 (844)
T 3j0a_A 336 -----GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---NL 401 (844)
T ss_dssp -----SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---CT
T ss_pred -----CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---cc
Confidence 24455556666666655555666777777777777777653 2 22667777777777776 44432 45
Q ss_pred CCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCc-cccCCCCCcEEEccCCcCCCCCChhhcccccccccC
Q 002055 662 SLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPT-KLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVN 740 (974)
Q Consensus 662 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ 740 (974)
+++.|++++|++.+.-.......+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+..+.
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--------- 472 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC--------- 472 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC---------
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc---------
Confidence 6777788877776542222222567777888888887765443 355678999999999998743322110
Q ss_pred CCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeee
Q 002055 741 PFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTG 820 (974)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 820 (974)
......++.|+.|||++|++++..|..++++++|+.|+|++|++++
T Consensus 473 ----------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 473 ----------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp ----------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ----------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 0001123456899999999999888889999999999999999998
Q ss_pred eccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccccCCC-CCCCCCCCCCCC
Q 002055 821 RIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCT 899 (974)
Q Consensus 821 ~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n-~lcg~~~~~~c~ 899 (974)
..|..+. ++|+.|||++|++++.+|..+. +|+.|++++|++.|.++-. .|..-...+| .++|.+....|.
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCV 589 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCS
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccC
Confidence 7777766 8999999999999999998764 7899999999999988742 2211112345 677777666776
Q ss_pred CC
Q 002055 900 DE 901 (974)
Q Consensus 900 ~~ 901 (974)
.+
T Consensus 590 ~p 591 (844)
T 3j0a_A 590 YP 591 (844)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-51 Score=495.92 Aligned_cols=537 Identities=20% Similarity=0.207 Sum_probs=335.1
Q ss_pred EEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccc
Q 002055 126 YLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYV 205 (974)
Q Consensus 126 ~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n 205 (974)
+++.+++.++. +|..+. ++|++|++++|.+++..+..|+++++|++|++++|.++.+.+..|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCccc--CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 34444444443 333222 44455555555544444444455555555555555544444444444444444444444
Q ss_pred cCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccC
Q 002055 206 NLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGP 285 (974)
Q Consensus 206 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 285 (974)
.++.... ..+..+++|++|++++|++++.++..++++++|++|++++|.+++..+|..+.++++|++|++++|++++.
T Consensus 91 ~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSP--GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCT--TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccccCh--hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 4444311 12244566666666666666666667788888888888888887644477888888888888888888877
Q ss_pred CCcccCCCCCCC----EEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCC-CCchHhhhcCCCCcEEEccCCCCCCcchh
Q 002055 286 IPEGLQSLTSLK----HLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLE-GRIPRSMARLCNLKRLYLSGAKLNQEISE 360 (974)
Q Consensus 286 ~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 360 (974)
.+..++.+++|+ +|++++|.+++..+..+.. .+|++|++++|.++ +..|..+..++.|+.+++..+.+.+...
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~- 246 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN- 246 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc-
Confidence 676666655544 7888888887554444443 47888888888876 3566778888888887776544332100
Q ss_pred hhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEec-cCccCCCCcccccCCCCCCCEEEccCCcccceechhh
Q 002055 361 ILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDL-SNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIH 439 (974)
Q Consensus 361 ~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~ 439 (974)
+.. +....+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .++
T Consensus 247 ------------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--- 301 (606)
T 3vq2_A 247 ------------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--- 301 (606)
T ss_dssp ------------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC---
T ss_pred ------------ccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh---
Confidence 000 001111112221 3444444 34444444443 445555555555555443 111
Q ss_pred hcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcC
Q 002055 440 FVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL 519 (974)
Q Consensus 440 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L 519 (974)
++..+++|++|++++|++ +.+|.. .+++|
T Consensus 302 -----------------------------------------------~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L 330 (606)
T 3vq2_A 302 -----------------------------------------------DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFL 330 (606)
T ss_dssp -----------------------------------------------CCCTTCCCSEEEEESCCC-SSCCCC---CCSSC
T ss_pred -----------------------------------------------hccccccCCEEEcccccC-cccccC---CCCcc
Confidence 222334444444444444 344421 34455
Q ss_pred ceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccc
Q 002055 520 YLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRN 599 (974)
Q Consensus 520 ~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n 599 (974)
+.|++++|...+.+ . +..+++|++|++++|
T Consensus 331 ~~L~l~~n~~~~~~-~-------------------------------------------------~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 331 KSLTLTMNKGSISF-K-------------------------------------------------KVALPSLSYLDLSRN 360 (606)
T ss_dssp CEEEEESCSSCEEC-C-------------------------------------------------CCCCTTCCEEECCSS
T ss_pred ceeeccCCcCccch-h-------------------------------------------------hccCCCCCEEECcCC
Confidence 55555554322111 0 112344455555555
Q ss_pred ccccc--CCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCC-cccccCCCCCeEeccCCccccc
Q 002055 600 ILQGN--LPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMP-ISLKNCTSLMTLDVGENEFFGN 676 (974)
Q Consensus 600 ~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ 676 (974)
.+++. +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+.++++|++|++++|++.+.
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 54443 35556666777777777777653 45666667777777777777776665 5667777777777777777776
Q ss_pred CchhHHhhhhhhhhhhccCCcccc-ccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCc
Q 002055 677 IPSWFGEMFSIMVFLILRSNYFHG-LLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNS 755 (974)
Q Consensus 677 ~p~~~~~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 755 (974)
.|..+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..++++++|
T Consensus 440 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------- 499 (606)
T 3vq2_A 440 FDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL------------------- 499 (606)
T ss_dssp CTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------
T ss_pred chhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC-------------------
Confidence 666665 56777777777777776 467888999999999999999998888877776665
Q ss_pred cccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccC-CCCE
Q 002055 756 TYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMR-SLES 834 (974)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~ 834 (974)
+.|+|++|++++.+|..++++++|+.|+|++|+++ .+|..+..++ +|+.
T Consensus 500 -----------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 500 -----------------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp -----------------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred -----------------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 78999999999999999999999999999999999 7888899997 6999
Q ss_pred EECCCCcccccCC
Q 002055 835 IDFSVNKFTGEIP 847 (974)
Q Consensus 835 LdLs~N~l~g~iP 847 (974)
|++++|.+.+..|
T Consensus 550 l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 550 FNLTNNSVACICE 562 (606)
T ss_dssp EECCSCCCCCSST
T ss_pred EEccCCCcccCCc
Confidence 9999999997655
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-53 Score=509.34 Aligned_cols=510 Identities=18% Similarity=0.229 Sum_probs=303.9
Q ss_pred CCHHHHHHHHHhhhcCCCCCCC--------CCCCCCCCCCccc---cceeeCCCCCceEEEEcCCCCccccCCCccccCC
Q 002055 38 CLESEREALLRFKQDLQDPSYR--------LASWIGNRDCCAW---AGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANP 106 (974)
Q Consensus 38 ~~~~~~~~ll~~k~~~~~~~~~--------~~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 106 (974)
....|+.||.++|+++.++.+. ..+|+.+++||.| .||+|+. .|||++|+|+++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~-------------- 91 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF-------------- 91 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS--------------
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCc--------------
Confidence 3457999999999998765443 3479988999999 9999986 489999999994
Q ss_pred CccccccccCcCcCCCCCCEEECCCCCCCCC-----------CCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCE
Q 002055 107 RSMLVGKVNPSLLDLKHLSYLDLSFNDFQGV-----------PIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQY 175 (974)
Q Consensus 107 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~-----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 175 (974)
.+.|.+|++++++++|++|+|++|.+... .+|... +.+|+ ++++++.+.+.+|..+..+
T Consensus 92 --~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~----- 161 (636)
T 4eco_A 92 --GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDL----- 161 (636)
T ss_dssp --CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHH-----
T ss_pred --ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHH-----
Confidence 88999999999999999999999976321 122221 23444 5555554444444333211
Q ss_pred EEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeC--C
Q 002055 176 LVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDL--S 253 (974)
Q Consensus 176 L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L--s 253 (974)
+.++..+++....+.. .....++.+.+ .
T Consensus 162 ------------------~~~l~~~~l~~~~~~~--------------------------------~~~~~l~~l~l~~~ 191 (636)
T 4eco_A 162 ------------------IKDCINSDPQQKSIKK--------------------------------SSRITLKDTQIGQL 191 (636)
T ss_dssp ------------------HHHHHHHCTTSCCCCC--------------------------------CCCCCCCTTTTTCC
T ss_pred ------------------HHHHhhcCcccccccc--------------------------------ccccchhhhhhccc
Confidence 0001111111000000 00001111111 1
Q ss_pred CCCCCCCCChhhhcCCCCCcEEEccCcccccC-----------------CCcccC--CCCCCCEEEcCCCCCCCCchhhh
Q 002055 254 HNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGP-----------------IPEGLQ--SLTSLKHLDLSFNHFNSSIPNLL 314 (974)
Q Consensus 254 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l 314 (974)
.|++++ + |..++++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-V-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-E-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-C-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 234444 2 44455555555555555555543 444444 55555555555555555555555
Q ss_pred hcCCCCCEEECcCCC-CCC-CchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCccccccccc
Q 002055 315 CRLTHLEHLSLSHNS-LEG-RIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIG 392 (974)
Q Consensus 315 ~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~ 392 (974)
+++++|++|++++|. +++ .+|..++.+. .+.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----------------------------------------------~~~ 302 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALA-----------------------------------------------DAP 302 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------------------------------------HSG
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhh-----------------------------------------------ccc
Confidence 555555555555554 444 4444433320 012
Q ss_pred CCCCCCEEeccCccCCCCccc--ccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccc
Q 002055 393 LFKNLDSLDLSNNSIVGLVPQ--SFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQL 470 (974)
Q Consensus 393 ~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 470 (974)
.+++|++|++++|.++ .+|. .++++++|++|++++|+++|.+| .+.++++|+.|++++|.+.
T Consensus 303 ~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~------------- 366 (636)
T 4eco_A 303 VGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT------------- 366 (636)
T ss_dssp GGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-------------
T ss_pred cCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-------------
Confidence 2356666666666666 4455 66677777777777777666555 3333333333333222221
Q ss_pred eeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCc
Q 002055 471 IELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMAN 550 (974)
Q Consensus 471 ~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n 550 (974)
.+|..
T Consensus 367 ------------------------------------~lp~~--------------------------------------- 371 (636)
T 4eco_A 367 ------------------------------------EIPAN--------------------------------------- 371 (636)
T ss_dssp ------------------------------------ECCTT---------------------------------------
T ss_pred ------------------------------------cccHh---------------------------------------
Confidence 11110
Q ss_pred cCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCc-ccccccccccccccCCcccccC--CCCCeeeCCCccccc
Q 002055 551 NLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMK-LQFLFLDRNILQGNLPDCWMSY--QNLMMLDLSNNKFIG 627 (974)
Q Consensus 551 ~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~ 627 (974)
+..+++ |++|++++|.++ .+|..+..+ ++|++|++++|++.+
T Consensus 372 ----------------------------------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 372 ----------------------------------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp ----------------------------------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred ----------------------------------hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 111222 333444444443 344444443 378888888888888
Q ss_pred cCCcccc-------CCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCcccc
Q 002055 628 NLPTSFG-------SLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHG 700 (974)
Q Consensus 628 ~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~ 700 (974)
.+|..+. .+++|++|++++|+++...+..+..+++|+.|++++|+++ .+|.......
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~--------------- 480 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE--------------- 480 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET---------------
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc---------------
Confidence 8887777 6778888888888887433334556788888888888876 5665432111
Q ss_pred ccCccccCCCCCcEEEccCCcCCCCCChhhc--ccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhh
Q 002055 701 LLPTKLCDLAFLQILDLADNNLSGTLPNCIH--NLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYS 778 (974)
Q Consensus 701 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (974)
+..+.++++|+.|++++|+++ .+|..+. .+++|
T Consensus 481 --~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L------------------------------------------ 515 (636)
T 4eco_A 481 --NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL------------------------------------------ 515 (636)
T ss_dssp --TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC------------------------------------------
T ss_pred --cccccccCCccEEECcCCcCC-ccChhhhhccCCCc------------------------------------------
Confidence 111234446777777777777 5665554 44433
Q ss_pred hccceeeEEEeccccceecCCcccccccCCCEEEc------cCceeeeeccccccccCCCCEEECCCCcccccCCccccC
Q 002055 779 EILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNL------SYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSS 852 (974)
Q Consensus 779 ~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~L------s~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~ 852 (974)
+.|||++|++++ +|..++++++|+.|+| ++|++.+.+|.+++.+++|+.|||++|++ +.||..+.
T Consensus 516 ------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 516 ------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp ------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred ------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence 567777777776 7777777777777777 56788889999999999999999999999 78888876
Q ss_pred CCCCCeeecccCeeee
Q 002055 853 LTFLNHLNLSNNYLTG 868 (974)
Q Consensus 853 l~~L~~L~ls~N~l~g 868 (974)
++|++||+++|++..
T Consensus 587 -~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 -PNISVLDIKDNPNIS 601 (636)
T ss_dssp -TTCCEEECCSCTTCE
T ss_pred -CcCCEEECcCCCCcc
Confidence 789999999997653
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-49 Score=485.11 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCCCCCCCC-----CCC--ccc------------cceeeCCCCCceEEEEcCCCCccc
Q 002055 36 VGCLESEREALLRFKQDLQDPSYRLASWIGN-----RDC--CAW------------AGIFCDNVTGHIVELNLRNPFTYY 96 (974)
Q Consensus 36 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~ 96 (974)
.++..+|+.||++||+++.+| +|+.+ .+| |.| .||+|+. .+||+.|+|+++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~---- 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF---- 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC----
Confidence 345678999999999999877 67632 355 999 9999986 789999999994
Q ss_pred cCCCccccCCCccccccccCcCcCCCCCCEEEC-CCCCCCCC
Q 002055 97 VQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDL-SFNDFQGV 137 (974)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~L-s~n~i~~~ 137 (974)
.+.|.+|++++++++|++|+| ++|.+.+.
T Consensus 334 ------------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 334 ------------GAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp ------------CCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred ------------CCCCcCchHHhccccceEeeeccccccccc
Confidence 899999999999999999999 88876553
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=477.81 Aligned_cols=527 Identities=22% Similarity=0.186 Sum_probs=298.2
Q ss_pred CCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-ccccCCCCCCCEEEcCCCCccccCccccCCCCCCCe
Q 002055 121 LKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMI-PHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEH 199 (974)
Q Consensus 121 l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 199 (974)
.++|++|||++|.+++. .|..+..+++|++|+|++|...+.+ |..|+++++|++|+|++|.+..+.+..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 35677777777777664 5666777777777777777544444 566777777777777777777666666666666666
Q ss_pred ecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCC-CCCcCCCCCCEEeCCCCCCCCCCChhhhcCC--CCCcEEE
Q 002055 200 LDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPP-LPVANFSTLTTLDLSHNQFDNSFVPSWVFGL--SHLLFLN 276 (974)
Q Consensus 200 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l--~~L~~L~ 276 (974)
|++++|.+.+.......+..+++|++|++++|.+++..+ ..++++++|++|++++|.+++.. +..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEE
Confidence 666666665421111112344444444444444444332 23444444444444444444332 3333333 3444444
Q ss_pred ccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcC---CCCcEEEccCCC
Q 002055 277 LGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARL---CNLKRLYLSGAK 353 (974)
Q Consensus 277 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~ 353 (974)
+++|.+.+..|..++.+++ .+.+ ..|++|++++|.+++..+..+... .+++.|.+..+.
T Consensus 181 L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CCCCccccccccchhhcCC-----------------cccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 4444444433333333222 0000 014444444444444443333321 334444444222
Q ss_pred CCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCC--CCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcc
Q 002055 354 LNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLF--KNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKL 431 (974)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 431 (974)
.... +..+.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 243 ~~~~--------------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 243 MGAG--------------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp CBCS--------------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred cccc--------------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC
Confidence 1110 00111111111112221 3455555555555544444455555555555555555
Q ss_pred cceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChh
Q 002055 432 HGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNR 511 (974)
Q Consensus 432 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~ 511 (974)
++..+. .|.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++ ++
T Consensus 303 ~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~-- 378 (844)
T 3j0a_A 303 NKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH-- 378 (844)
T ss_dssp CEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS--
T ss_pred CCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc--
Confidence 433332 34444444444444444433322233333333333333333333333344444555555555554442 11
Q ss_pred HHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcc
Q 002055 512 LLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKL 591 (974)
Q Consensus 512 ~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L 591 (974)
.+++|+.+++++|+++ .+|....+++.|++++|++++.-. ...+..+++|
T Consensus 379 --------------------------~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~---~~~~~~l~~L 428 (844)
T 3j0a_A 379 --------------------------FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDI---LYFLLRVPHL 428 (844)
T ss_dssp --------------------------SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTT---HHHHTTCTTC
T ss_pred --------------------------CCCCcchhccCCCCcc-cccccccccceeecccCccccCch---hhhhhcCCcc
Confidence 1344455555555554 344455677888888888776422 1234568899
Q ss_pred cccccccccccccCCc-ccccCCCCCeeeCCCcccc-----ccCCccccCCCCccEEEccCCcccccCCcccccCCCCCe
Q 002055 592 QFLFLDRNILQGNLPD-CWMSYQNLMMLDLSNNKFI-----GNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMT 665 (974)
Q Consensus 592 ~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 665 (974)
+.|++++|.+++..+. .+..+++|+.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 9999999998865443 4566889999999999987 445567888999999999999999988888999999999
Q ss_pred EeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCC
Q 002055 666 LDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLP 727 (974)
Q Consensus 666 L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 727 (974)
|+|++|++++..|..+. ++|+.|++++|++++.+|..+ .+|+.|++++|++.+..+
T Consensus 509 L~Ls~N~l~~l~~~~~~---~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP---ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEESCCCSSCCCCCCC---SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred eECCCCCCCccChhhhh---ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 99999999876665442 789999999999999998765 478999999999987665
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-47 Score=455.12 Aligned_cols=501 Identities=22% Similarity=0.258 Sum_probs=305.0
Q ss_pred CCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecC
Q 002055 123 HLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDF 202 (974)
Q Consensus 123 ~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 202 (974)
++++|++++|.+++. .+..+..+++|++|+|++|++.+..|..|+++++|++|++++|.++.+++..|.
T Consensus 29 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 97 (570)
T 2z63_A 29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS---------- 97 (570)
T ss_dssp SCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------
T ss_pred cccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc----------
Confidence 455555555555443 333444555555555555555444444455555555555555544444444343
Q ss_pred ccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCccc
Q 002055 203 SYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNF 282 (974)
Q Consensus 203 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 282 (974)
.+++|++|++++|+++++++..++++++|++|++++|.+++..+|..+.++++|++|++++|++
T Consensus 98 ----------------~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 98 ----------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp ----------------TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ----------------CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 3455555555555555555555667777777777777776533466677777777777777777
Q ss_pred ccCCCcccCCCCCC----CEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCC-CchHhhhcCCCCcEEEccCCCCCCc
Q 002055 283 HGPIPEGLQSLTSL----KHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEG-RIPRSMARLCNLKRLYLSGAKLNQE 357 (974)
Q Consensus 283 ~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 357 (974)
++..+..++.+++| ++|++++|.+++..|..+... +|++|++++|.... .++..+..++.++.+.+....+...
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 76666666666666 677777777766555555544 67777777764332 3455566666666555443222110
Q ss_pred chhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCc-cCCCCcccccCCCCCCCEEEccCCcccceec
Q 002055 358 ISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNN-SIVGLVPQSFGRLSSLRVLQLYRNKLHGTLS 436 (974)
Q Consensus 358 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~ 436 (974)
. . ++.+ ....+ ..+..+ .++.++++++ .+.+..|..+..+++|++|++++|.+. .+
T Consensus 241 ~------------~-l~~~--~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l- 297 (570)
T 2z63_A 241 G------------N-LEKF--DKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RV- 297 (570)
T ss_dssp S------------S-CEEC--CTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SC-
T ss_pred h------------h-hhhc--chhhh-----cccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hh-
Confidence 0 0 1100 00000 001111 2344444444 344444444444444444444444433 11
Q ss_pred hhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhc
Q 002055 437 EIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 516 (974)
Q Consensus 437 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l 516 (974)
|.++..+ +|++|++++|.+. .+|.
T Consensus 298 ------------------------------------------------~~~~~~~-~L~~L~l~~n~~~-~l~~------ 321 (570)
T 2z63_A 298 ------------------------------------------------KDFSYNF-GWQHLELVNCKFG-QFPT------ 321 (570)
T ss_dssp ------------------------------------------------CBCCSCC-CCSEEEEESCBCS-SCCB------
T ss_pred ------------------------------------------------hhhhccC-CccEEeeccCccc-ccCc------
Confidence 1112222 2333333333222 1111
Q ss_pred CcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCccccccc
Q 002055 517 SQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFL 596 (974)
Q Consensus 517 ~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~L 596 (974)
..+++|+.|++
T Consensus 322 ---------------------------------------------------------------------~~l~~L~~L~l 332 (570)
T 2z63_A 322 ---------------------------------------------------------------------LKLKSLKRLTF 332 (570)
T ss_dssp ---------------------------------------------------------------------CBCSSCCEEEE
T ss_pred ---------------------------------------------------------------------ccccccCEEeC
Confidence 01233444444
Q ss_pred ccccccccCCcccccCCCCCeeeCCCccccccC--CccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCccc
Q 002055 597 DRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNL--PTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFF 674 (974)
Q Consensus 597 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 674 (974)
++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|++++..+. +..+++|+.|++++|++.
T Consensus 333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEE
T ss_pred cCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccc
Confidence 44444433333 45677888888888776543 56677777788888887777754443 777777777777777765
Q ss_pred ccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCC
Q 002055 675 GNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLN 754 (974)
Q Consensus 675 ~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~ 754 (974)
+..|. ..+.++++|+.|++++|++++..|..+..+++|
T Consensus 410 ~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------ 447 (570)
T 2z63_A 410 QMSEF------------------------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------------ 447 (570)
T ss_dssp SCTTS------------------------CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------------
T ss_pred cccch------------------------hhhhcCCCCCEEeCcCCcccccchhhhhcCCcC------------------
Confidence 44331 245667788888888888887777766665554
Q ss_pred ccccccccceeeEEEEecccchhhhccceeeEEEeccccce-ecCCcccccccCCCEEEccCceeeeeccccccccCCCC
Q 002055 755 STYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFS-GTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLE 833 (974)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~ 833 (974)
+.|++++|+++ +.+|..++.+++|+.|+|++|++++.+|..++.+++|+
T Consensus 448 ------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 448 ------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp ------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ------------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 67888888887 67888899999999999999999999999999999999
Q ss_pred EEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCc
Q 002055 834 SIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSST 874 (974)
Q Consensus 834 ~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~ 874 (974)
.|++++|++++.+|..+.++++|++|++++|+++|.+|...
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99999999999988899999999999999999999999753
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=448.20 Aligned_cols=500 Identities=22% Similarity=0.231 Sum_probs=363.0
Q ss_pred CCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 002055 81 TGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFV 160 (974)
Q Consensus 81 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~ 160 (974)
..+++.|+++++ .+.+..+.+|..+++|++|+|++|.++++ .|..++.+++|++|+|++|+++
T Consensus 27 ~~~l~~L~Ls~n----------------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 27 PFSTKNLDLSFN----------------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CSSCCEEECCSC----------------CCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCC
T ss_pred cccccEEEccCC----------------ccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCC
Confidence 457999999984 66666677899999999999999999975 5678999999999999999999
Q ss_pred CCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCC
Q 002055 161 GMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLP 240 (974)
Q Consensus 161 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 240 (974)
+..|..|+++++|++|++++|.++.++...+.++++|++|++++|.+..+. .+..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------lp~~ 144 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------------------------LPEY 144 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-------------------------CCGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec-------------------------Chhh
Confidence 888899999999999999999998887766777666666666666555421 2344
Q ss_pred CcCCCCCCEEeCCCCCCCCCCChhhhcCCCCC----cEEEccCcccccCCCcccCCCCCCCEEEcCCCCCC-CCchhhhh
Q 002055 241 VANFSTLTTLDLSHNQFDNSFVPSWVFGLSHL----LFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFN-SSIPNLLC 315 (974)
Q Consensus 241 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~ 315 (974)
+.++++|++|++++|++++.. +..+..+++| ++|++++|.+++..|..+... +|++|++++|... ..++..+.
T Consensus 145 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 145 FSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp GGGCTTCCEEECTTSCCCEEC-GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHH
T ss_pred hcccCCCCEEeCcCCccceec-HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhc
Confidence 566666666666666666543 5556666666 677888887776666666554 7888888887543 24566778
Q ss_pred cCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCC-CCcccccccccCC
Q 002055 316 RLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNS-SIFGHLTDQIGLF 394 (974)
Q Consensus 316 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~p~~l~~l 394 (974)
.++.++.+.+....+.. ...++. +....+.+ +..+ .++.+++.++ .+.+.+|..+..+
T Consensus 223 ~l~~l~~~~l~~~~~~~--------~~~l~~--~~~~~~~~---------l~~l--~l~~l~l~~~~~~~~~~~~~~~~l 281 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRN--------EGNLEK--FDKSALEG---------LCNL--TIEEFRLAYLDYYLDDIIDLFNCL 281 (570)
T ss_dssp TTTTCEEEEEEEEECCC--------CSSCEE--CCTTTTGG---------GGGS--EEEEEEEEETTEEESCSTTTTGGG
T ss_pred CccccceeeeccccccC--------chhhhh--cchhhhcc---------cccc--chhhhhhhcchhhhhhchhhhcCc
Confidence 88888877765433221 111111 11111110 0011 1566666666 5667778888999
Q ss_pred CCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEe
Q 002055 395 KNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELG 474 (974)
Q Consensus 395 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 474 (974)
++|++|++++|.+++ +|..+..+ +|++|++++|.+. .+|. ..
T Consensus 282 ~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~-------------------------------- 323 (570)
T 2z63_A 282 TNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT---LK-------------------------------- 323 (570)
T ss_dssp TTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB---CB--------------------------------
T ss_pred CcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc---cc--------------------------------
Confidence 999999999999985 57788888 9999999999886 3332 12
Q ss_pred ccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCC
Q 002055 475 LRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSG 554 (974)
Q Consensus 475 l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~ 554 (974)
+++|++|++++|.+.+..+.
T Consensus 324 ----------------l~~L~~L~l~~n~~~~~~~~-------------------------------------------- 343 (570)
T 2z63_A 324 ----------------LKSLKRLTFTSNKGGNAFSE-------------------------------------------- 343 (570)
T ss_dssp ----------------CSSCCEEEEESCBSCCBCCC--------------------------------------------
T ss_pred ----------------ccccCEEeCcCCcccccccc--------------------------------------------
Confidence 23333344333333211111
Q ss_pred CCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccC--CcccccCCCCCeeeCCCccccccCCcc
Q 002055 555 PLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNL--PDCWMSYQNLMMLDLSNNKFIGNLPTS 632 (974)
Q Consensus 555 ~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 632 (974)
..+++|++|++++|.+++.. |..+.++++|++|++++|.+.+..+.
T Consensus 344 -------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 391 (570)
T 2z63_A 344 -------------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391 (570)
T ss_dssp -------------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-
T ss_pred -------------------------------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-
Confidence 11345666666666666543 67788999999999999999865554
Q ss_pred ccCCCCccEEEccCCcccccCC-cccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCC
Q 002055 633 FGSLSSLVSLHLRKNRLSGTMP-ISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAF 711 (974)
Q Consensus 633 ~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~ 711 (974)
+..+++|++|++++|++.+..| ..+.++++|++|++++|++.+..|.. +..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------~~~l~~ 446 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-------------------------FNGLSS 446 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-------------------------TTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-------------------------hhcCCc
Confidence 9999999999999999998766 56888999999999998876655543 445666
Q ss_pred CcEEEccCCcCC-CCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEec
Q 002055 712 LQILDLADNNLS-GTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVS 790 (974)
Q Consensus 712 L~~L~Ls~N~l~-g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs 790 (974)
|+.|++++|+++ +.+|..+..+++| +.|||+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L------------------------------------------------~~L~l~ 478 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNL------------------------------------------------TFLDLS 478 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTC------------------------------------------------CEEECT
T ss_pred CcEEECcCCcCccccchhhhhcccCC------------------------------------------------CEEECC
Confidence 777777777766 4566555554444 567777
Q ss_pred cccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCc
Q 002055 791 KNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQ 848 (974)
Q Consensus 791 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~ 848 (974)
+|++++..|..++++++|+.|+|++|++++.+|..++++++|+.||+++|.+++.+|.
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8888777788888899999999999999988888899999999999999999988774
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-45 Score=436.89 Aligned_cols=482 Identities=20% Similarity=0.205 Sum_probs=331.9
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|+.+. ++|++|++++|.+++. .|..++.+++|++|++++|++.+..|..|+++++|++|++++|.++.+++..|.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4555443 6888999999888875 567788888888888888888887778888888888888888887776665555
Q ss_pred CCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCC
Q 002055 193 GLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHL 272 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 272 (974)
++++|++|++++|.++..+ .+..+.++++|++|++++|.+.+.+.+..+..+++|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~-------------------------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLG-------------------------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TCTTCCEEECTTCCCSSSC-------------------------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred cCCCCcEEECCCCcccccc-------------------------hhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 5555555555555444321 223566677777777777764443323566677777
Q ss_pred cEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhh-hhcCCCCCEEECcCCCCCCCc--h-HhhhcCCCCcEEE
Q 002055 273 LFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNL-LCRLTHLEHLSLSHNSLEGRI--P-RSMARLCNLKRLY 348 (974)
Q Consensus 273 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~ 348 (974)
++|++++|++++..|..++.+++|++|++++|.+. .+|.. +..+++|++|++++|.+++.. | .....+++|+.|+
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 77777777777777777777777777777777765 33443 345777777777777776531 1 1123345566666
Q ss_pred ccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCc------ccccCCCCCCC
Q 002055 349 LSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLV------PQSFGRLSSLR 422 (974)
Q Consensus 349 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~ 422 (974)
+++|.+.+..+.. ++..+..+++|+.+++++|.+.+.. ...+..+++|+
T Consensus 230 l~~n~l~~~~~~~-------------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 230 FRGSVLTDESFNE-------------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp EESCEEEHHHHHH-------------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred ccccccchhHHHH-------------------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 6665554433321 1122344556666666666655431 11233444555
Q ss_pred EEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCC
Q 002055 423 VLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNS 502 (974)
Q Consensus 423 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n 502 (974)
.|++.++.+..... ...++.......+|++|++++|
T Consensus 285 ~L~l~~~~i~~~~~--------------------------------------------~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 285 TVTIRRLHIPQFYL--------------------------------------------FYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp EEEEESCBCSCGGG--------------------------------------------SCCCCHHHHHSTTCCEEEEESS
T ss_pred cccccccccchhhh--------------------------------------------cccchhhhhhcccceEEEeccC
Confidence 55555544321100 0011222334567788888888
Q ss_pred CCcCCcChhHHhhcCcCceEEeccccccccccc----cccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccc
Q 002055 503 GISGTFPNRLLKSASQLYLLDLGHNQIHGELTN----LTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIF 578 (974)
Q Consensus 503 ~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~----l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~ 578 (974)
++. .+|..++..+++|++|++++|++++.++. +..+ ++|++|++++|++++..+
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l---------------------~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW---------------------PSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS---------------------TTCCEEECTTSCCCCHHH
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc---------------------ccCcEEEccCCccccccc
Confidence 776 77877777788888888888888765431 2333 456666666666654211
Q ss_pred hhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccc
Q 002055 579 HFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLK 658 (974)
Q Consensus 579 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 658 (974)
....+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ .
T Consensus 379 --~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~ 448 (549)
T 2z81_A 379 --TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----L 448 (549)
T ss_dssp --HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----C
T ss_pred --chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----c
Confidence 1134667899999999999998 68888999999999999999987 455444 368999999999999753 5
Q ss_pred cCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCC
Q 002055 659 NCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLP 727 (974)
Q Consensus 659 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 727 (974)
.+++|++|++++|+++ .+|.. . .+++|++|++++|++++..|..+..+++|+.|++++|++++.+|
T Consensus 449 ~l~~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 FLPRLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCChhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7899999999999997 78874 3 68999999999999999999999999999999999999999887
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-45 Score=437.42 Aligned_cols=492 Identities=21% Similarity=0.190 Sum_probs=324.7
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEEC
Q 002055 246 TLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSL 325 (974)
Q Consensus 246 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 325 (974)
...+.+.+++.++. +|..+. ++|++|++++|++++..|..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 6 ~~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 6 ASGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TTSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 33445667777764 354432 67788888888877766777777888888888888777666677777778888888
Q ss_pred cCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCc
Q 002055 326 SHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNN 405 (974)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n 405 (974)
++|.+++..|..++.+++|++|++++|.+.+. ..|..++.+++|++|++++|
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL----------------------------GVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS----------------------------CSSCSCTTCTTCCEEEEEES
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCccccc----------------------------chhhhhhccCCccEEECCCC
Confidence 88877776666677777777777777765531 12335677788888888888
Q ss_pred cCCCCc-ccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCC
Q 002055 406 SIVGLV-PQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRF 484 (974)
Q Consensus 406 ~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 484 (974)
.+.+.+ +..+.++++|++|++++|++++.++. .+..+++|+.|+++.|.+.......+....+|+.|++++|.+.+..
T Consensus 134 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred ccccccCHhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence 744433 45788888888888888888876665 6777777777777777654222111122334444444444443321
Q ss_pred --C-ccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCC-----
Q 002055 485 --P-LWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPL----- 556 (974)
Q Consensus 485 --p-~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~----- 556 (974)
| .....+++|+.|++++|.+.+..+..+.. .+..+++|+.+++++|.+.+..
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK--------------------LLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG--------------------GGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHH--------------------Hhhhhcccccccccccccccccccccc
Confidence 1 11122334444444444443332222211 1223334444444444433311
Q ss_pred ----CCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCcc
Q 002055 557 ----PLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTS 632 (974)
Q Consensus 557 ----p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 632 (974)
+..+.+++.|++.++.+..... ...++..+...++|+.|++++|++. .+|..
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~-----------------------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~ 328 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYL-----------------------FYDLSTVYSLLEKVKRITVENSKVF-LVPCS 328 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGG-----------------------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHH
T ss_pred chhhhhhhcccccccccccccchhhh-----------------------cccchhhhhhcccceEEEeccCccc-cCCHH
Confidence 1123344444444443321100 0012222334566777777777765 56655
Q ss_pred c-cCCCCccEEEccCCcccccCCc---ccccCCCCCeEeccCCcccccCc--hhHHhhhhhhhhhhccCCccccccCccc
Q 002055 633 F-GSLSSLVSLHLRKNRLSGTMPI---SLKNCTSLMTLDVGENEFFGNIP--SWFGEMFSIMVFLILRSNYFHGLLPTKL 706 (974)
Q Consensus 633 ~-~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~~~~~L~~L~L~~N~l~~~~p~~l 706 (974)
+ ..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ ..+. .+++|++|++++|+++ .+|..+
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~ 406 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDISRNTFH-PMPDSC 406 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-GCTTCCEEECTTCCCC-CCCSCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh-cCCCCCEEECCCCCCc-cCChhh
Confidence 5 4677788888888887776542 36677788888888887765432 2343 5778888888888887 578888
Q ss_pred cCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeE
Q 002055 707 CDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRI 786 (974)
Q Consensus 707 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 786 (974)
..+++|+.|++++|+++ .+|..+. +.|+.
T Consensus 407 ~~~~~L~~L~Ls~N~l~-~l~~~~~--------------------------------------------------~~L~~ 435 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIR-VVKTCIP--------------------------------------------------QTLEV 435 (549)
T ss_dssp CCCTTCCEEECTTSCCS-CCCTTSC--------------------------------------------------TTCSE
T ss_pred cccccccEEECCCCCcc-cccchhc--------------------------------------------------CCceE
Confidence 88999999999999987 3443221 12478
Q ss_pred EEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCee
Q 002055 787 IDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 866 (974)
Q Consensus 787 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l 866 (974)
|||++|++++.+ +++++|++|+|++|+++ .||+ .+.+++|+.|||++|++++.+|..++.+++|++|++++|++
T Consensus 436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 999999999753 57899999999999999 7887 57899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002055 867 TGKIPSS 873 (974)
Q Consensus 867 ~g~iP~~ 873 (974)
+|.+|..
T Consensus 510 ~~~~~~~ 516 (549)
T 2z81_A 510 DCSCPRI 516 (549)
T ss_dssp CCCHHHH
T ss_pred cCCCccH
Confidence 9999853
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.6e-45 Score=430.52 Aligned_cols=460 Identities=20% Similarity=0.211 Sum_probs=321.0
Q ss_pred cEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCC
Q 002055 273 LFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGA 352 (974)
Q Consensus 273 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 352 (974)
++|++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35666666666 3555444 67777777777777666677777777777777777777666777777777777777777
Q ss_pred CCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCC-CcccccCCCCCCCEEEccCCcc
Q 002055 353 KLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVG-LVPQSFGRLSSLRVLQLYRNKL 431 (974)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l 431 (974)
.++ .+|. . .+++|++|++++|.+++ .+|..++++++|++|++++|.+
T Consensus 80 ~l~-~lp~-----------------------------~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 80 KLV-KISC-----------------------------H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCC-EEEC-----------------------------C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cee-ecCc-----------------------------c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 765 2332 1 23445555555555544 2344555555555555555554
Q ss_pred cceechhhhcCCCCC--cEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCC-CCCEEeCCCCCCcCCc
Q 002055 432 HGTLSEIHFVNLTKL--SVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQK-DLQFLDLFNSGISGTF 508 (974)
Q Consensus 432 ~~~i~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~Ls~n~~~~~~ 508 (974)
++ ..+..+++| +.|++++|.+.. .+..|..+..+. ....+++++|.+.+.+
T Consensus 128 ~~----~~~~~l~~L~L~~L~l~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 128 EK----SSVLPIAHLNISKVLLVLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CG----GGGGGGTTSCEEEEEEEECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred ch----hhccccccceeeEEEeecccccc----------------------cccccccccccccceEEEEeccCcchhhh
Confidence 43 123333443 444444433300 112222222222 1224455666666666
Q ss_pred ChhHHhhcCcCceEEecccc-------ccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhh
Q 002055 509 PNRLLKSASQLYLLDLGHNQ-------IHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFL 581 (974)
Q Consensus 509 p~~~~~~l~~L~~L~Ls~n~-------l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~ 581 (974)
+...+..+++|+.+++++|. +.+.++.+..+++|+.|++ ++|.+++..+..+
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l---------------------~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL---------------------NNIETTWNSFIRI 240 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE---------------------EEEEEEHHHHHHH
T ss_pred hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc---------------------cccccCHHHHHHH
Confidence 66556666777777777775 4555555555544444444 4444443322222
Q ss_pred HHhhhcCCcccccccccccccccCCccc-----ccCCCCCeeeCCCccccccCC-ccccCC---CCccEEEccCCccccc
Q 002055 582 CYTINAGMKLQFLFLDRNILQGNLPDCW-----MSYQNLMMLDLSNNKFIGNLP-TSFGSL---SSLVSLHLRKNRLSGT 652 (974)
Q Consensus 582 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~n~l~~~ 652 (974)
.... ..++|++|++++|.++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+...
T Consensus 241 ~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 241 LQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence 2222 24689999999999998889888 8899999999999988 566 445444 6799999999988643
Q ss_pred CCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCcccc--ccCccccCCCCCcEEEccCCcCCCCCChh-
Q 002055 653 MPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHG--LLPTKLCDLAFLQILDLADNNLSGTLPNC- 729 (974)
Q Consensus 653 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~- 729 (974)
. .+..+++|++|++++|++++.+|.++. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|..
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 2 126888999999999999988888887 68899999999999987 67788999999999999999999877764
Q ss_pred hcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCC
Q 002055 730 IHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQ 809 (974)
Q Consensus 730 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~ 809 (974)
+..++ .|+.|++++|++++.+|..+. ++|+
T Consensus 395 ~~~l~------------------------------------------------~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 395 CSWTK------------------------------------------------SLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp CCCCT------------------------------------------------TCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred hccCc------------------------------------------------cCCEEECcCCCCCcchhhhhc--ccCC
Confidence 33333 347899999999999988775 7999
Q ss_pred EEEccCceeeeeccccccccCCCCEEECCCCcccccCCcc-ccCCCCCCeeecccCeeeecCCC
Q 002055 810 SLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQS-MSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 810 ~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~-l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
.|+|++|+++ .+|..+..+++|+.|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999 89998999999999999999999 57776 89999999999999999998763
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-43 Score=426.15 Aligned_cols=526 Identities=21% Similarity=0.171 Sum_probs=340.3
Q ss_pred CCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEE
Q 002055 221 PSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLD 300 (974)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 300 (974)
+++++|+|++|+++++++..|.++++|++|+|++|++++.. +..+.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46777777777777777777778888888888888776543 55677777788888887777766666777778888888
Q ss_pred cCCCCCCCCchhhhhcCCCCCEEECcCCCCCC-CchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCC
Q 002055 301 LSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEG-RIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLP 379 (974)
Q Consensus 301 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 379 (974)
+++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++.+..+..+.. +...+.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~-------- 201 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPL-------- 201 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTT--------
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhh--------
Confidence 88887776655667777888888888877764 35667777777777777777776654442110 111111
Q ss_pred CCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCcccccc
Q 002055 380 NSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLK 459 (974)
Q Consensus 380 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~ 459 (974)
....++++.|.++...+..+ ....++.+++.+|.....+....+..+..++...+..+.....
T Consensus 202 ----------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 202 ----------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp ----------------CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ----------------hhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 22345555665554433322 2334555666666554444444555666655554432221110
Q ss_pred ccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCC--cChhHHhhcCcCceEEeccccccccccccc
Q 002055 460 VRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGT--FPNRLLKSASQLYLLDLGHNQIHGELTNLT 537 (974)
Q Consensus 460 ~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~--~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~ 537 (974)
... .......+.....+...++..+..... .....+....+++.+++.++.+... +.+.
T Consensus 265 ~~l------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~ 325 (635)
T 4g8a_A 265 GNL------------------EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFS 325 (635)
T ss_dssp CCC------------------SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGG
T ss_pred ccc------------------ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccc
Confidence 000 000011111112222222221111100 0001122334555555555544322 1223
Q ss_pred cccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCe
Q 002055 538 KASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMM 617 (974)
Q Consensus 538 ~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 617 (974)
....++.|++.+|.+.+..+..+ ..|+.+++.+|...... ....+++|+.
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~l----------------------------~~L~~l~l~~n~~~~~~--~~~~l~~L~~ 375 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPTLKL----------------------------KSLKRLTFTSNKGGNAF--SEVDLPSLEF 375 (635)
T ss_dssp SCCCCSEEEEESCEESSCCCCBC----------------------------TTCCEEEEESCCSCCBC--CCCBCTTCCE
T ss_pred cchhhhhhhcccccccCcCcccc----------------------------hhhhhcccccccCCCCc--cccccccccc
Confidence 33344455554444443333323 34555555555444322 2345677777
Q ss_pred eeCCCcccc--ccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccC
Q 002055 618 LDLSNNKFI--GNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRS 695 (974)
Q Consensus 618 L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~ 695 (974)
|++++|.+. +..+..+..+.+|+.|++..|.... ++..+..+++|+.+++++|+.....+......+++++.++++.
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred chhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 888777764 3345556667788888888887764 4456777888888888888777666654444677788888888
Q ss_pred CccccccCccccCCCCCcEEEccCCcCCC-CCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEeccc
Q 002055 696 NYFHGLLPTKLCDLAFLQILDLADNNLSG-TLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVA 774 (974)
Q Consensus 696 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (974)
|.+.+..|..+..++.|+.|++++|++.+ .+|..+..+++|
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------------------------------- 496 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------------------------- 496 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------------------
T ss_pred cccccccccccccchhhhhhhhhhcccccccCchhhhhcccc--------------------------------------
Confidence 88888888888889999999999997543 455555555444
Q ss_pred chhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCC-
Q 002055 775 ADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSL- 853 (974)
Q Consensus 775 ~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l- 853 (974)
+.|||++|++++.+|..++++++|++|+|++|+|++.+|..++.+++|++|||++|++++.+|..+..+
T Consensus 497 ----------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 497 ----------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp ----------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred ----------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeecccCeeeecCC
Q 002055 854 TFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 854 ~~L~~L~ls~N~l~g~iP 871 (974)
++|++|++++|++++.+.
T Consensus 567 ~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCCEEECTTCCBCCSGG
T ss_pred CcCCEEEeeCCCCcccCC
Confidence 789999999999998765
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-41 Score=412.82 Aligned_cols=520 Identities=23% Similarity=0.257 Sum_probs=309.5
Q ss_pred CCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeec
Q 002055 122 KHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLD 201 (974)
Q Consensus 122 ~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 201 (974)
+.+++|||++|.|+.+ .+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|+++.++...|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L- 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 129 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE-
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE-
Confidence 3678888888888764 44567788888888888888877767777888888888888777777766666555555544
Q ss_pred CccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcc
Q 002055 202 FSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNN 281 (974)
Q Consensus 202 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 281 (974)
++++|+++++++..|+++++|++|++++|.+++...|..+..+++|++|++++|+
T Consensus 130 -------------------------~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 130 -------------------------VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp -------------------------ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred -------------------------ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 4555555555556677778888888888887665456777777888888888887
Q ss_pred cccCCCcccCCCCC----CCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCC-chHhhhcCCCCcEEEccCCCCCC
Q 002055 282 FHGPIPEGLQSLTS----LKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGR-IPRSMARLCNLKRLYLSGAKLNQ 356 (974)
Q Consensus 282 l~~~~p~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 356 (974)
+++..+..+..+.+ ...++++.|.+....+. ......++.+++.+|..... .+..+..+..++...+..+....
T Consensus 185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 77766666554433 34677777777643333 33344566777777655432 23445666666655554332211
Q ss_pred cchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCC---cccccCCCCCCCEEEccCCcccc
Q 002055 357 EISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGL---VPQSFGRLSSLRVLQLYRNKLHG 433 (974)
Q Consensus 357 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~ 433 (974)
.. .+.......+..+..+...++..+..... .+..+..+.+++.+++.++.+.+
T Consensus 264 ~~-----------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (635)
T 4g8a_A 264 EG-----------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER 320 (635)
T ss_dssp SC-----------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred cc-----------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc
Confidence 00 00001111222333344444433322211 11223333445555554444332
Q ss_pred eechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHH
Q 002055 434 TLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLL 513 (974)
Q Consensus 434 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~ 513 (974)
.. .+.. ...++.|++.+|.+.+..+
T Consensus 321 ~~---~~~~------------------------------------------------~~~L~~L~l~~~~~~~~~~---- 345 (635)
T 4g8a_A 321 VK---DFSY------------------------------------------------NFGWQHLELVNCKFGQFPT---- 345 (635)
T ss_dssp CG---GGGS------------------------------------------------CCCCSEEEEESCEESSCCC----
T ss_pred cc---cccc------------------------------------------------chhhhhhhcccccccCcCc----
Confidence 11 1111 2233333333333321111
Q ss_pred hhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccc
Q 002055 514 KSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQF 593 (974)
Q Consensus 514 ~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~ 593 (974)
..++.|+.+++++|...... .... +++|+.+++++|.+...
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~-~~~~---------------------l~~L~~L~ls~n~l~~~----------------- 386 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAF-SEVD---------------------LPSLEFLDLSRNGLSFK----------------- 386 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBC-CCCB---------------------CTTCCEEECCSSCCBEE-----------------
T ss_pred ccchhhhhcccccccCCCCc-cccc---------------------ccccccchhhccccccc-----------------
Confidence 11234445555544433211 1111 23444444544444321
Q ss_pred cccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCC-cccccCCCCCeEeccCCc
Q 002055 594 LFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMP-ISLKNCTSLMTLDVGENE 672 (974)
Q Consensus 594 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~ 672 (974)
+..+..+..+.+|+.++++.|.... .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.
T Consensus 387 ---------~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 387 ---------GCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp ---------EECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred ---------cccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 1223333444555555555555442 23344455555555555555443332 234555566666666666
Q ss_pred ccccCchhHHhhhhhhhhhhccCCcc-ccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcccccc
Q 002055 673 FFGNIPSWFGEMFSIMVFLILRSNYF-HGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSI 751 (974)
Q Consensus 673 l~~~~p~~~~~~~~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~ 751 (974)
+.+..|..+. .++.++.|++++|.+ .+.+|..+..+++|++|||++|++++..|..++++++|
T Consensus 457 l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L--------------- 520 (635)
T 4g8a_A 457 TRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------- 520 (635)
T ss_dssp CEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------
T ss_pred cccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC---------------
Confidence 5555554444 455666666666653 34567788889999999999999998888888777665
Q ss_pred CCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccccc-C
Q 002055 752 PLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAM-R 830 (974)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~ 830 (974)
+.|+|++|+|++..|..++++++|++|||++|+|++.+|+.+..+ +
T Consensus 521 ---------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 521 ---------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp ---------------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred ---------------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 688999999998888889999999999999999999999999988 7
Q ss_pred CCCEEECCCCccccc
Q 002055 831 SLESIDFSVNKFTGE 845 (974)
Q Consensus 831 ~L~~LdLs~N~l~g~ 845 (974)
+|+.|||++|.++..
T Consensus 568 ~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 568 SLAFLNLTQNDFACT 582 (635)
T ss_dssp TCCEEECTTCCBCCS
T ss_pred cCCEEEeeCCCCccc
Confidence 899999999999853
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.6e-43 Score=413.39 Aligned_cols=464 Identities=20% Similarity=0.224 Sum_probs=280.4
Q ss_pred cEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCC
Q 002055 224 VELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSF 303 (974)
Q Consensus 224 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 303 (974)
++|++++|+++.++.. +. ++|++|++++|.+++.. +..+..+++|++|++++|++++..|..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccc-cc--ccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 4567777777765543 22 67788888888777654 66777788888888888888776677788888888888888
Q ss_pred CCCCCCchhhhhcCCCCCEEECcCCCCCC-CchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCC
Q 002055 304 NHFNSSIPNLLCRLTHLEHLSLSHNSLEG-RIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSS 382 (974)
Q Consensus 304 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 382 (974)
|.++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+.+. .
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~----------------- 131 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-------S----------------- 131 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-------G-----------------
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-------h-----------------
Confidence 8877 45555 67888888888888776 4667788888888888887776541 1
Q ss_pred CcccccccccCCCCC--CEEeccCccC--CCCcccccCCCC-CCCEEEccCCcccceechhhhcCCCCCcEEEcCCcccc
Q 002055 383 IFGHLTDQIGLFKNL--DSLDLSNNSI--VGLVPQSFGRLS-SLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLT 457 (974)
Q Consensus 383 ~~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~ 457 (974)
+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|...
T Consensus 132 --------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 132 --------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp --------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred --------ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 2223344 6666666666 555555554443 22345556666655555555555555555555554310
Q ss_pred ccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHh--hcCcCceEEecccccccccc-
Q 002055 458 LKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLK--SASQLYLLDLGHNQIHGELT- 534 (974)
Q Consensus 458 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~~- 534 (974)
.... .+.+.+| .+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.++|.+|
T Consensus 204 ~~~~-----------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 204 NKCS-----------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp TTTH-----------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred cccc-----------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 0000 0001111 3445566666666666655433332221 13467777777777666555
Q ss_pred cc-----ccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccc-hhhHHhhhcCCcccccccccccccccCCcc
Q 002055 535 NL-----TKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIF-HFLCYTINAGMKLQFLFLDRNILQGNLPDC 608 (974)
Q Consensus 535 ~l-----~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 608 (974)
.+ ..++ +|+.+++++|.+ .+| ..+.. +....+|+.|++++|.+.+.. .
T Consensus 266 ~~~~~~~~~l~---------------------~L~~l~l~~n~~--~~p~~~~~~-~~~~~~L~~L~l~~n~l~~~~--~ 319 (520)
T 2z7x_B 266 RDFDYSGTSLK---------------------ALSIHQVVSDVF--GFPQSYIYE-IFSNMNIKNFTVSGTRMVHML--C 319 (520)
T ss_dssp CCCCCCSCCCC---------------------EEEEEEEEECCC--CSCTHHHHH-HHHTCCCSEEEEESSCCCCCC--C
T ss_pred chhhcccccCc---------------------eeEeccccccce--ecchhhhhc-ccccCceeEEEcCCCcccccc--c
Confidence 22 2222 233333333333 122 11111 101134555555555443211 0
Q ss_pred cccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccc--cCCcccccCCCCCeEeccCCcccccCchhHHhhhh
Q 002055 609 WMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSG--TMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFS 686 (974)
Q Consensus 609 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 686 (974)
+..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+ +
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-------------------------~ 374 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-------------------------K 374 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-------------------------T
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-------------------------C
Confidence 1344445555555555544444444444555555555554443 333344444 4
Q ss_pred hhhhhhccCCccccccCcc-ccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCcccccccccee
Q 002055 687 IMVFLILRSNYFHGLLPTK-LCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQ 765 (974)
Q Consensus 687 ~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (974)
+|++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. +
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~------------------------------- 421 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P------------------------------- 421 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T-------------------------------
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c-------------------------------
Confidence 5555555555555444433 66788999999999999887776542 2
Q ss_pred eEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccc-ccccCCCCEEECCCCcccc
Q 002055 766 ALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPET-IGAMRSLESIDFSVNKFTG 844 (974)
Q Consensus 766 ~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~LdLs~N~l~g 844 (974)
.|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|+.||+++|.+++
T Consensus 422 -----------------~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 422 -----------------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp -----------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -----------------cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 2378999999999 89998999999999999999999 57765 9999999999999999998
Q ss_pred cCC
Q 002055 845 EIP 847 (974)
Q Consensus 845 ~iP 847 (974)
..+
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 765
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-44 Score=430.92 Aligned_cols=252 Identities=21% Similarity=0.254 Sum_probs=169.6
Q ss_pred cCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCC-ccEEEccCCcccccCCcccccCC--CC
Q 002055 587 AGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSS-LVSLHLRKNRLSGTMPISLKNCT--SL 663 (974)
Q Consensus 587 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L 663 (974)
.+++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 34455555555555555555 5555555555555555555 55555555555 555555555555 4555444433 55
Q ss_pred CeEeccCCcccccCchhHHh------hhhhhhhhhccCCccccccCcc-ccCCCCCcEEEccCCcCCCCCChhhcccccc
Q 002055 664 MTLDVGENEFFGNIPSWFGE------MFSIMVFLILRSNYFHGLLPTK-LCDLAFLQILDLADNNLSGTLPNCIHNLTAM 736 (974)
Q Consensus 664 ~~L~Ls~N~l~~~~p~~~~~------~~~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l 736 (974)
++|++++|++.+.+|..+.. .+++|+.|++++|++++ +|.. +..+++|+.|++++|+++ .+|..+.....
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~- 481 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN- 481 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-
Confidence 55555555555555544330 13455566666666653 3333 445788899999999888 67654322110
Q ss_pred cccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccc--cccCCCEEEcc
Q 002055 737 ATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLT--NLKALQSLNLS 814 (974)
Q Consensus 737 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls 814 (974)
.....++.|+.|||++|+++ .+|..+. .+++|+.|+|+
T Consensus 482 ---------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 482 ---------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp ---------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred ---------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 00012335689999999999 8999987 99999999999
Q ss_pred CceeeeeccccccccCCCCEEEC------CCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccccCCC
Q 002055 815 YNIFTGRIPETIGAMRSLESIDF------SVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN 887 (974)
Q Consensus 815 ~N~l~g~ip~~l~~l~~L~~LdL------s~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n 887 (974)
+|++++ +|..++.+++|+.|+| ++|++.+.+|.+++++++|++|++++|++ +.||..-. ..+......+|
T Consensus 522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSC
T ss_pred CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCC
Confidence 999998 9999999999999999 56889999999999999999999999999 89997522 34444445566
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.4e-43 Score=425.79 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=67.8
Q ss_pred CCCCCCchHhhhcCCCCcEEEccCCCCCC-----------------cchhhhhhhcc--cCCCCCceeeCCCCCCccccc
Q 002055 328 NSLEGRIPRSMARLCNLKRLYLSGAKLNQ-----------------EISEILDIFSG--CVPNGLESLVLPNSSIFGHLT 388 (974)
Q Consensus 328 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~p 388 (974)
|.+++ +|..++++++|+.|+|++|.+++ .+|. .++ .++. |++|++++|.+.+.+|
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~-L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKD-LTDVELYNCPNMTQLP 508 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTT-CCEEEEESCTTCCSCC
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCC-CCEEECcCCCCCccCh
Confidence 44444 45555555555555555555554 2444 333 4444 5566666665555666
Q ss_pred ccccCCCCCCEEeccCcc-CCC-CcccccCCC-------CCCCEEEccCCcccceech-hhhcCCCCCcEEEcCCcccc
Q 002055 389 DQIGLFKNLDSLDLSNNS-IVG-LVPQSFGRL-------SSLRVLQLYRNKLHGTLSE-IHFVNLTKLSVFLVGENTLT 457 (974)
Q Consensus 389 ~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l-------~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~l~~n~l~ 457 (974)
..++++++|++|++++|+ +++ .+|..++.+ ++|+.|++++|.++ .+|. ..+.++++|+.|++++|.+.
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 666666666666666665 555 445443333 36666666666666 4443 24566666666666665544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.8e-42 Score=408.08 Aligned_cols=228 Identities=17% Similarity=0.237 Sum_probs=185.6
Q ss_pred CCcccccccccccccccCCccc-----ccCCCCCeeeCCCccccccCC-ccccC---CCCccEEEccCCcccccCCcccc
Q 002055 588 GMKLQFLFLDRNILQGNLPDCW-----MSYQNLMMLDLSNNKFIGNLP-TSFGS---LSSLVSLHLRKNRLSGTMPISLK 658 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~---l~~L~~L~L~~n~l~~~~p~~l~ 658 (974)
.++|++|++++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|++++|.+.... ...
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~ 350 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPP 350 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--Ccc
Confidence 3478888888888888888776 6677777777777766 445 22222 257889999998876322 126
Q ss_pred cCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCcccc--ccCccccCCCCCcEEEccCCcCCCCCChh-hccccc
Q 002055 659 NCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHG--LLPTKLCDLAFLQILDLADNNLSGTLPNC-IHNLTA 735 (974)
Q Consensus 659 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~ 735 (974)
.+++|++|++++|++++.+|..+. .+++|++|++++|++++ .+|..+.++++|+.|++++|++++.+|.. +..++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~- 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE- 428 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT-
T ss_pred CCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc-
Confidence 788899999999999888888776 68889999999998887 45678999999999999999999877753 33333
Q ss_pred ccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccC
Q 002055 736 MATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSY 815 (974)
Q Consensus 736 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 815 (974)
.|+.|++++|++++.+|..+. ++|+.|+|++
T Consensus 429 -----------------------------------------------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~ 459 (562)
T 3a79_B 429 -----------------------------------------------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459 (562)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCS
T ss_pred -----------------------------------------------cCCEEECCCCCCCcchhhhhc--CcCCEEECCC
Confidence 347899999999998888765 7999999999
Q ss_pred ceeeeeccccccccCCCCEEECCCCcccccCCcc-ccCCCCCCeeecccCeeeecCCC
Q 002055 816 NIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQS-MSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 816 N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~-l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
|+++ .+|..+..+++|+.|||++|+++ .+|.. +..+++|++|++++|++.|.+|.
T Consensus 460 N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 460 NRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999 89998889999999999999999 57776 99999999999999999998874
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-40 Score=395.41 Aligned_cols=472 Identities=22% Similarity=0.222 Sum_probs=267.6
Q ss_pred CCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEc
Q 002055 222 SLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDL 301 (974)
Q Consensus 222 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 301 (974)
..+++++++|++++++.... ++|++|++++|.+++.. +..+..+++|++|++++|++++..|..+.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 33666666666666554222 56777777777776544 566777777777777777777666677777777777777
Q ss_pred CCCCCCCCchhhhhcCCCCCEEECcCCCCCC-CchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCC
Q 002055 302 SFNHFNSSIPNLLCRLTHLEHLSLSHNSLEG-RIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPN 380 (974)
Q Consensus 302 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 380 (974)
++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---------------------- 162 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---------------------- 162 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----------------------
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----------------------
Confidence 777776 45554 67777777777777765 34567777777777777777665411
Q ss_pred CCCcccccccccCCCCC--CEEeccCccC--CCCcccccCCCC-CCCEEEccCCcccceechhhhcCCCCCcEEEcCCcc
Q 002055 381 SSIFGHLTDQIGLFKNL--DSLDLSNNSI--VGLVPQSFGRLS-SLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENT 455 (974)
Q Consensus 381 n~~~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~ 455 (974)
+..+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+.++++|+.+++++|.
T Consensus 163 ----------~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 163 ----------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp ----------TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred ----------hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 1112222 5555655555 555555544433 111345555555555554445555555555555543
Q ss_pred ccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHh--hcCcCceEEeccccccccc
Q 002055 456 LTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLK--SASQLYLLDLGHNQIHGEL 533 (974)
Q Consensus 456 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~ 533 (974)
...... ......+..++.|+.++++++.+.+........ ..++|++|++++|.++|.+
T Consensus 233 ~~~~~l--------------------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 233 ENCQRL--------------------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp TTHHHH--------------------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred cccchH--------------------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 110000 000112333444444444444433221111110 1225555555555555444
Q ss_pred c-ccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccC
Q 002055 534 T-NLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSY 612 (974)
Q Consensus 534 ~-~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l 612 (974)
| .+.... ...+..|+.+++..+.+ .+|......+-...+|++|++++|.+.... ....+
T Consensus 293 p~~~~~~~----------------~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 293 DREEFTYS----------------ETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp CCCCCCCC----------------SCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cchhhhcc----------------cccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 4 110000 00011222222333333 222111111111244566666665554211 11345
Q ss_pred CCCCeeeCCCccccccCCccccCCCCccEEEccCCcccc--cCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhh
Q 002055 613 QNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSG--TMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVF 690 (974)
Q Consensus 613 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~ 690 (974)
++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+.++++|++|++++|++.+.+|.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----------- 421 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD----------- 421 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----------
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-----------
Confidence 555555555555555555555555555555555555554 2233455555555555555555433332
Q ss_pred hhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEE
Q 002055 691 LILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVM 770 (974)
Q Consensus 691 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (974)
..+..+++|+.|++++|++++.+|..+. +
T Consensus 422 -------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~------------------------------------ 450 (562)
T 3a79_B 422 -------------RTCAWAESILVLNLSSNMLTGSVFRCLP--P------------------------------------ 450 (562)
T ss_dssp -------------CCCCCCTTCCEEECCSSCCCGGGGSSCC--T------------------------------------
T ss_pred -------------hhhcCcccCCEEECCCCCCCcchhhhhc--C------------------------------------
Confidence 2366778899999999999877765442 2
Q ss_pred ecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccc-ccccCCCCEEECCCCcccccCCc
Q 002055 771 KGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPET-IGAMRSLESIDFSVNKFTGEIPQ 848 (974)
Q Consensus 771 ~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~LdLs~N~l~g~iP~ 848 (974)
.|+.|||++|+++ .+|..+.++++|+.|+|++|+++ .+|.. ++.+++|+.||+++|.+.+..|.
T Consensus 451 ------------~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 451 ------------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp ------------TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred ------------cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 2378899999998 79988889999999999999999 57766 99999999999999999987663
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-39 Score=373.66 Aligned_cols=263 Identities=27% Similarity=0.382 Sum_probs=123.6
Q ss_pred ccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEE
Q 002055 488 LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLD 567 (974)
Q Consensus 488 l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~ 567 (974)
+..+++|++|++++|++++ +|.. .++|++|++++|.+++ +|.+..+++|+.|++++|.+++ +|..+.+|++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEE
Confidence 4455555555555555553 3332 2366777777776665 4456666666666666666665 444444555555
Q ss_pred CcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCC
Q 002055 568 LSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKN 647 (974)
Q Consensus 568 Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 647 (974)
+++|++. .+|. +..+++|++|++++|++++ +|.. +++|++|++++|
T Consensus 222 l~~n~l~-----------------------------~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 222 AGNNILE-----------------------------ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDN 267 (454)
T ss_dssp CCSSCCS-----------------------------SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSS
T ss_pred CcCCcCC-----------------------------cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCC
Confidence 5555544 2332 4445555555555555543 3321 245555555555
Q ss_pred cccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCC-CCCcEEEccCCcCCCCC
Q 002055 648 RLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDL-AFLQILDLADNNLSGTL 726 (974)
Q Consensus 648 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~i 726 (974)
++++ +|.. .++|+.|++++|++++ +|. ..++|+.|++++|++++. + .+ ++|+.|++++|++++ +
T Consensus 268 ~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-l 332 (454)
T 1jl5_A 268 YLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-L 332 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-C
T ss_pred cccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-c
Confidence 5553 3322 2455555555555544 111 123455555555555431 1 12 356666666666664 4
Q ss_pred ChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCccccccc
Q 002055 727 PNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLK 806 (974)
Q Consensus 727 p~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~ 806 (974)
|..+ + .|+.||+++|+++ .+|. .++
T Consensus 333 p~~~---~------------------------------------------------~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 333 PALP---P------------------------------------------------RLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp CCCC---T------------------------------------------------TCCEEECCSSCCS-CCCC---CCT
T ss_pred cccC---C------------------------------------------------cCCEEECCCCccc-cccc---hhh
Confidence 4321 1 1256666666666 4555 356
Q ss_pred CCCEEEccCceeee--eccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeee--cCCC
Q 002055 807 ALQSLNLSYNIFTG--RIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG--KIPS 872 (974)
Q Consensus 807 ~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g--~iP~ 872 (974)
+|+.|++++|+++| .+|.+++.+ +.|.+.|.+|.. +++|++||+++|+++| .||.
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 66777777777766 566555432 345566666653 3566677777777766 6664
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-39 Score=368.98 Aligned_cols=396 Identities=21% Similarity=0.241 Sum_probs=247.2
Q ss_pred CceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcC
Q 002055 373 LESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVG 452 (974)
Q Consensus 373 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~ 452 (974)
|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++++|.. .+++.|+++
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~l~ 79 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELELN 79 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEECT
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEEec
Confidence 55555555555 55666666677777777777777666666666666542222222210 123333333
Q ss_pred CccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecccccccc
Q 002055 453 ENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE 532 (974)
Q Consensus 453 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 532 (974)
+|.++.... -+.+|++|++++|.+.+ +|.. .++|++|++++|++.+ +|. ..++|++|++++|.+++
T Consensus 80 ~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 80 NLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-
T ss_pred CCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-
Confidence 333322111 11344444454444444 3432 3677888888887774 332 12578888888888886
Q ss_pred ccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccC
Q 002055 533 LTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSY 612 (974)
Q Consensus 533 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l 612 (974)
+|.+..+++|++|++++|++++ +|..+.+|++|++++|++++ +| .++.+++|++|++++|.+++ +|.. .
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 6678888888888888888886 66667789999999999887 44 25678899999999999886 4543 2
Q ss_pred CCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhh
Q 002055 613 QNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLI 692 (974)
Q Consensus 613 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~ 692 (974)
++|++|++++|.+. .+|. ++.+++|++|++++|++++ +|.. +++|+.|++++|++.+ +|.. +++|+.|+
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ 283 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFLD 283 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEEE
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCEEE
Confidence 58999999999888 6774 8889999999999999985 5543 4789999999999876 6653 47888999
Q ss_pred ccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEec
Q 002055 693 LRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKG 772 (974)
Q Consensus 693 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (974)
+++|++++. |.. .++|+.|++++|++++ +|. +
T Consensus 284 ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~----~--------------------------------------- 315 (454)
T 1jl5_A 284 VSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCD----L--------------------------------------- 315 (454)
T ss_dssp CCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECC----C---------------------------------------
T ss_pred CcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccC----C---------------------------------------
Confidence 999998872 211 2678899999998874 221 1
Q ss_pred ccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccc--cCCccc
Q 002055 773 VAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTG--EIPQSM 850 (974)
Q Consensus 773 ~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g--~iP~~l 850 (974)
.+.|+.||+++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.||+++|++++ .+|.++
T Consensus 316 --------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 316 --------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp --------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred --------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence 1134789999999996 7764 588999999999999 5777 47899999999999999 788876
Q ss_pred cCCCCCCeeecccCeeeecCCCCcccCcccccccCCCCCCC
Q 002055 851 SSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCG 891 (974)
Q Consensus 851 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~lcg 891 (974)
++ ++.|++.|.+|.. +..+....+.+|.+.|
T Consensus 380 ~~--------L~~n~~~~~i~~~--~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 380 ED--------LRMNSHLAEVPEL--PQNLKQLHVETNPLRE 410 (454)
T ss_dssp CE--------EECCC--------------------------
T ss_pred Hh--------hhhcccccccccc--cCcCCEEECCCCcCCc
Confidence 54 4568899999974 3445555566776665
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-37 Score=361.02 Aligned_cols=381 Identities=22% Similarity=0.220 Sum_probs=235.7
Q ss_pred CCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEe
Q 002055 395 KNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELG 474 (974)
Q Consensus 395 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 474 (974)
++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+.+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45555555555555555555555555555555555555455444455555555555555554433333333333333333
Q ss_pred ccCCCCCCCCCcc--ccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecccccccccc-ccccccccceeeccCcc
Q 002055 475 LRSCNVGSRFPLW--LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSFLRLMANN 551 (974)
Q Consensus 475 l~~~~~~~~~p~~--l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~ 551 (974)
+++|.+.+..+.. +..+++|++|++++|++.+..|..++..+++|++|++++|.+++..+ .+..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~----------- 178 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ----------- 178 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-----------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-----------
Confidence 3333333322222 44455555555555555544454444445555555555555444333 121110
Q ss_pred CCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCc
Q 002055 552 LSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPT 631 (974)
Q Consensus 552 l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 631 (974)
..+++.|++++|.+.+..+..+. ......+..+++|++|++++|++.+..|.
T Consensus 179 --------~~~L~~L~l~~n~l~~~~~~~~~--------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 179 --------GKHFTLLRLSSITLQDMNEYWLG--------------------WEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp --------TCEEEEEECTTCBCTTCSTTCTT--------------------HHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred --------cccccccccccCcccccchhhcc--------------------ccccccccccceeeeEecCCCcccccchh
Confidence 01233333333333321110000 00011123456677777777777666665
Q ss_pred cccCC---CCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHh-hhhhhhhhhccCCccccccCcccc
Q 002055 632 SFGSL---SSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGE-MFSIMVFLILRSNYFHGLLPTKLC 707 (974)
Q Consensus 632 ~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~~~L~~L~L~~N~l~~~~p~~l~ 707 (974)
.+... ++|+.|++++|.+.+... ..+.+.+..+..+.. ..++|+.|++++|.+++.+|..+.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred hhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 55443 677777777776554311 111111111111110 236788888888888888888899
Q ss_pred CCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEE
Q 002055 708 DLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRII 787 (974)
Q Consensus 708 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 787 (974)
.+++|+.|++++|++++..|..+..++.| +.|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------------~~L 328 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHL------------------------------------------------LKL 328 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------------------------CEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccC------------------------------------------------CEE
Confidence 99999999999999998778777766655 789
Q ss_pred EeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeee
Q 002055 788 DVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 867 (974)
Q Consensus 788 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~ 867 (974)
||++|++++..|..++++++|++|+|++|++++.+|.+++.+++|++|||++|++++..|..+..+++|++|++++|+++
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 99999999888999999999999999999999999999999999999999999999877777899999999999999999
Q ss_pred ecCCCCccc
Q 002055 868 GKIPSSTQL 876 (974)
Q Consensus 868 g~iP~~~~~ 876 (974)
|.+|....+
T Consensus 409 ~~~~~~~~l 417 (455)
T 3v47_A 409 CSCPRIDYL 417 (455)
T ss_dssp CCTTTTHHH
T ss_pred cCCCcchHH
Confidence 999965443
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7e-39 Score=350.82 Aligned_cols=293 Identities=27% Similarity=0.421 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CceEEEEcCCCCccccCCCccccCCCccccc
Q 002055 37 GCLESEREALLRFKQDLQDPSYRLASWIGNRDCCA--WAGIFCDNVT--GHIVELNLRNPFTYYVQPDQYEANPRSMLVG 112 (974)
Q Consensus 37 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 112 (974)
.|.++|++||++||+++.+|. .+++|..+++||. |.||+|+... ++|++|+|+++ .+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~----------------~l~~ 64 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL----------------NLPK 64 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC----------------CCSS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC----------------CccC
Confidence 599999999999999998876 7899987889998 9999998654 89999999984 7778
Q ss_pred --cccCcCcCCCCCCEEECCC-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCcc
Q 002055 113 --KVNPSLLDLKHLSYLDLSF-NDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFG 189 (974)
Q Consensus 113 --~l~~~l~~l~~L~~L~Ls~-n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~ 189 (974)
.+|+.+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..|.++++|++|++++|.++...+.
T Consensus 65 ~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 65 PYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp CEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 8899999999999999995 888875 899999999999999999999989999999999999999999998866666
Q ss_pred ccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCC-CCCEEeCCCCCCCCCCChhhhcC
Q 002055 190 WLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFS-TLTTLDLSHNQFDNSFVPSWVFG 268 (974)
Q Consensus 190 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~ 268 (974)
.+..+++|++|++++|+++ +..+..+..++ +|++|++++|++++.. |..+..
T Consensus 144 ~~~~l~~L~~L~L~~N~l~--------------------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~~~~~ 196 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRIS--------------------------GAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFAN 196 (313)
T ss_dssp GGGGCTTCCEEECCSSCCE--------------------------EECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGG
T ss_pred HHhcCCCCCeEECcCCccc--------------------------CcCCHHHhhhhhcCcEEECcCCeeeccC-ChHHhC
Confidence 6666666666666665554 33334445554 5666666666665444 555555
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEE
Q 002055 269 LSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLY 348 (974)
Q Consensus 269 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (974)
++ |++|++++|.+++.+|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 55 66666666666666666666677777777777766655444 56666777777777777666666677777777777
Q ss_pred ccCCCCCCcchhhhhhhcccCCCCCceeeCCCCC
Q 002055 349 LSGAKLNQEISEILDIFSGCVPNGLESLVLPNSS 382 (974)
Q Consensus 349 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 382 (974)
+++|++++.+|. . +.++. |+.+++++|.
T Consensus 275 Ls~N~l~~~ip~----~-~~l~~-L~~l~l~~N~ 302 (313)
T 1ogq_A 275 VSFNNLCGEIPQ----G-GNLQR-FDVSAYANNK 302 (313)
T ss_dssp CCSSEEEEECCC----S-TTGGG-SCGGGTCSSS
T ss_pred CcCCcccccCCC----C-ccccc-cChHHhcCCC
Confidence 777777666665 2 44454 7777777776
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-36 Score=350.87 Aligned_cols=387 Identities=22% Similarity=0.240 Sum_probs=271.5
Q ss_pred cEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCc-hHhhhcCCCCcEEEccC
Q 002055 273 LFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRI-PRSMARLCNLKRLYLSG 351 (974)
Q Consensus 273 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~ 351 (974)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45777777776 4555 2 278899999999988777888888999999999998887555 45688888888888888
Q ss_pred CCCCCcchhhhhhhcccCCCCCceeeCCCCCCccccccc--ccCCCCCCEEeccCccCCCCcccc-cCCCCCCCEEEccC
Q 002055 352 AKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQ--IGLFKNLDSLDLSNNSIVGLVPQS-FGRLSSLRVLQLYR 428 (974)
Q Consensus 352 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 428 (974)
|.+.+..|. .++.++. |++|++++|.+.+.++.. +..+++|++|++++|.+++..|.. +.++++|++|++++
T Consensus 89 n~l~~~~~~----~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 89 NQFLQLETG----AFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CTTCEECTT----TTTTCTT-CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CccCccChh----hccCccc-CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 887766555 4444554 666666666665544433 555566666666666665554444 45556666666666
Q ss_pred CcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCcc--------ccCCCCCCEEeCC
Q 002055 429 NKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLW--------LYSQKDLQFLDLF 500 (974)
Q Consensus 429 n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~--------l~~~~~L~~L~Ls 500 (974)
|++++..+. .+..+ ....++.+++++|.+....+.+ +..+++|++|+++
T Consensus 164 n~l~~~~~~-~l~~l----------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 164 NKVKSICEE-DLLNF----------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCBSCCCTT-TSGGG----------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred CcccccChh-hhhcc----------------------ccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 655544332 22222 1134444455554444433322 2345677788888
Q ss_pred CCCCcCCcChhHHhhc--CcCceEEeccccccccccccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccc
Q 002055 501 NSGISGTFPNRLLKSA--SQLYLLDLGHNQIHGELTNLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIF 578 (974)
Q Consensus 501 ~n~~~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~ 578 (974)
+|++.+..|..+.... ++|+.|++++|...+...... .+.+..+ ..+.+
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~-------------~~~~~--- 271 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDN-------------FTFKG--- 271 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCT-------------TTTGG---
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccchh-------------hhccCcc-------------ccccc---
Confidence 8887777666655432 566677776665543221111 1110000 00000
Q ss_pred hhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccc
Q 002055 579 HFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLK 658 (974)
Q Consensus 579 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 658 (974)
...++|++|++++|.+++..|..+..+++|++|++++|++.+..|..|+.+++|++|++++|++++..|..+.
T Consensus 272 -------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 272 -------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp -------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred -------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 1236788888999988888888899999999999999999988888999999999999999999888888899
Q ss_pred cCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCCh
Q 002055 659 NCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPN 728 (974)
Q Consensus 659 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 728 (974)
++++|++|+|++|++.+..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999888888887 689999999999999987777789999999999999999999883
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.6e-36 Score=345.20 Aligned_cols=229 Identities=21% Similarity=0.206 Sum_probs=131.3
Q ss_pred CCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhc
Q 002055 139 IPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTH 218 (974)
Q Consensus 139 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 218 (974)
.+..++++++|++|++++|.+++. | .++++++|++|++++|.++.++ +..+++|++|++++|.+++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~------- 101 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD------- 101 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-------
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee-------
Confidence 445667788888888888887764 4 5777788888888777776653 445555555555555444431
Q ss_pred CCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCE
Q 002055 219 MLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKH 298 (974)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 298 (974)
++++++|++|++++|++++. + +..+++|++|++++|++++. + ++.+++|++
T Consensus 102 ----------------------~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~ 152 (457)
T 3bz5_A 102 ----------------------VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTE 152 (457)
T ss_dssp ----------------------CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCE
T ss_pred ----------------------cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCcccee-c--cccCCcCCE
Confidence 44455555555555555441 2 44555555555555555542 1 455566666
Q ss_pred EEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeC
Q 002055 299 LDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVL 378 (974)
Q Consensus 299 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L 378 (974)
|++++|...+.+ .++.+++|++|++++|.+++ +| ++.+++|+.|++++|.+++.
T Consensus 153 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--------------------- 206 (457)
T 3bz5_A 153 LDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--------------------- 206 (457)
T ss_dssp EECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---------------------
T ss_pred EECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---------------------
Confidence 666666443333 24556666666666666654 22 45555555555555554331
Q ss_pred CCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcC
Q 002055 379 PNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVG 452 (974)
Q Consensus 379 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~ 452 (974)
.++.+++|++|++++|++++. | +..+++|+.|++++|++++.. ...+++|+.|+++
T Consensus 207 -----------~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 207 -----------DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCI 262 (457)
T ss_dssp -----------CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECT
T ss_pred -----------ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEecc
Confidence 144456666777777766663 3 666677777777777666432 2344445555443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7e-35 Score=335.34 Aligned_cols=272 Identities=21% Similarity=0.187 Sum_probs=214.9
Q ss_pred ccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCcccc
Q 002055 112 GKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWL 191 (974)
Q Consensus 112 ~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l 191 (974)
+..+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++++++|++|++++|.++.++ +
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~ 102 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---V 102 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred cccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---c
Confidence 3444567889999999999999997 45 689999999999999999875 3 899999999999999999874 8
Q ss_pred CCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCC
Q 002055 192 SGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSH 271 (974)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 271 (974)
.++++|++|++++|+++.++ +..+++|++|++++|+++++ .++.+++|++|++++|+..+.+ .+..+++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTT
T ss_pred CCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCc
Confidence 89999999999999998864 57789999999999999886 3788899999999999655543 4678889
Q ss_pred CcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccC
Q 002055 272 LLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSG 351 (974)
Q Consensus 272 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (974)
|++|++++|++++ +| +..+++|++|++++|.+++. .++.+++|++|++++|.+++ +| ++.+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 9999999999886 44 78889999999999998864 37788999999999999886 55 77888888888888
Q ss_pred CCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcc
Q 002055 352 AKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKL 431 (974)
Q Consensus 352 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 431 (974)
|++++..+ +.++. |+.|+++.+ +|+.|++++|.+.+.+| ++.+++|+.|++++|..
T Consensus 243 N~l~~~~~-------~~l~~-L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 243 NPLTELDV-------STLSK-LTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp SCCSCCCC-------TTCTT-CCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred CcCCCcCH-------HHCCC-CCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 88876422 23333 666665543 45566666666655554 35566666666666665
Q ss_pred cceec
Q 002055 432 HGTLS 436 (974)
Q Consensus 432 ~~~i~ 436 (974)
.+.+|
T Consensus 299 l~~l~ 303 (457)
T 3bz5_A 299 LYLLD 303 (457)
T ss_dssp CCEEE
T ss_pred cceec
Confidence 55554
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-35 Score=324.00 Aligned_cols=258 Identities=28% Similarity=0.518 Sum_probs=236.3
Q ss_pred Ccccccccccccccc--cCCcccccCCCCCeeeCCC-ccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCe
Q 002055 589 MKLQFLFLDRNILQG--NLPDCWMSYQNLMMLDLSN-NKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMT 665 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 665 (974)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888888 8888999999999999995 8898899999999999999999999999999999999999999
Q ss_pred EeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCC-CCcEEEccCCcCCCCCChhhcccccccccCCCcc
Q 002055 666 LDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLA-FLQILDLADNNLSGTLPNCIHNLTAMATVNPFTG 744 (974)
Q Consensus 666 L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~ 744 (974)
|++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|+++|.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999889998887 689999999999999999999999998 999999999999999998876654 3
Q ss_pred CccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccc
Q 002055 745 NAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPE 824 (974)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 824 (974)
+.||+++|++++.+|..++++++|+.|+|++|++++.+|.
T Consensus 200 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 200 ----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp ----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ----------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 7899999999999999999999999999999999988887
Q ss_pred cccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccccCCC-CCCCCCCCCCC
Q 002055 825 TIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNC 898 (974)
Q Consensus 825 ~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n-~lcg~~~~~~c 898 (974)
++.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.||...++..+....+.|| .+||.|++ .|
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 88999999999999999999999999999999999999999999999888888988899999 79998876 56
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-32 Score=318.92 Aligned_cols=343 Identities=25% Similarity=0.340 Sum_probs=256.0
Q ss_pred CceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCC
Q 002055 82 GHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVG 161 (974)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 161 (974)
.+++.|+++++ .+ ..+| .+..+++|++|++++|.+++. +. ++.+++|++|++++|.+.+
T Consensus 46 ~~l~~L~l~~~----------------~i-~~l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 46 DQVTTLQADRL----------------GI-KSID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp HTCCEEECCSS----------------CC-CCCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC
T ss_pred ccccEEecCCC----------------CC-ccCc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCcccc
Confidence 36888888873 22 2344 477889999999999999874 44 8899999999999999886
Q ss_pred CCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCC
Q 002055 162 MIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPV 241 (974)
Q Consensus 162 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 241 (974)
..+ ++++++|++|++++|.++.++. +..+++|++|++++|.+...+. +..+++|++|+++ +.+.+.. .+
T Consensus 105 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~-~~~~~~~--~~ 173 (466)
T 1o6v_A 105 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFG-NQVTDLK--PL 173 (466)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG----GTTCTTCSEEEEE-ESCCCCG--GG
T ss_pred Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh----hccCCcccEeecC-CcccCch--hh
Confidence 654 8999999999999999888764 8889999999999999888653 5678899999986 4555543 37
Q ss_pred cCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCC
Q 002055 242 ANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLE 321 (974)
Q Consensus 242 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 321 (974)
.++++|++|++++|.+++ ...+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. ..+..+++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp TTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ccCCCCCEEECcCCcCCC---ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 888899999999998876 2457788889999999888886544 67788899999988888753 3577888889
Q ss_pred EEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEe
Q 002055 322 HLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLD 401 (974)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 401 (974)
+|++++|.+++..+ +..+++|++|++++|.+.+..+ +..++. |+.|++++|.+.+..+ ++.+++|++|+
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~------~~~l~~-L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP------LAGLTA-LTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG------GTTCTT-CSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc------ccCCCc-cCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 99998888886554 7888888888888888876432 334555 7777777777766544 66777777777
Q ss_pred ccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCC
Q 002055 402 LSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVG 481 (974)
Q Consensus 402 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 481 (974)
+++|++++..| +..+++|++|++++|++++. + .+.++++|+.|++++|++....+ +..+++|+.|++++|.+.
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 77777777654 66777777777777777654 2 46677777777777776654433 334444444444444443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=330.54 Aligned_cols=211 Identities=19% Similarity=0.163 Sum_probs=147.9
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|+.|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 45666666666666666666666666777777777766655555566666666777766666666666666666666666
Q ss_pred ccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcc
Q 002055 668 VGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAI 747 (974)
Q Consensus 668 Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~ 747 (974)
+++|++.+.+| .......+|+.|++++|++++..+..+..++.|
T Consensus 207 l~~~~~~~~~~-------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 250 (477)
T 2id5_A 207 ISHWPYLDTMT-------------------------PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL----------- 250 (477)
T ss_dssp EECCTTCCEEC-------------------------TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-----------
T ss_pred CCCCccccccC-------------------------cccccCccccEEECcCCcccccCHHHhcCcccc-----------
Confidence 66666555444 333444567778888887773322344444433
Q ss_pred ccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccc
Q 002055 748 KYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIG 827 (974)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 827 (974)
+.|||++|++++..+..+.++++|+.|+|++|++++..|..+.
T Consensus 251 -------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 251 -------------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp -------------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred -------------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 6778888888877777778888888888888888888888888
Q ss_pred ccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCC
Q 002055 828 AMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 828 ~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP 871 (974)
.+++|+.|||++|++++..+..+..+++|++|++++|++.+.++
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 88888888888888887766777888888888888888887655
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-32 Score=317.21 Aligned_cols=347 Identities=23% Similarity=0.315 Sum_probs=259.6
Q ss_pred CCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCe
Q 002055 120 DLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEH 199 (974)
Q Consensus 120 ~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 199 (974)
.+++++.|+++++.+.. +|. +..+++|++|++++|.+.+..| +.++++|++|++++|.+..+.+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 46789999999999986 454 7889999999999999986644 9999999999999999988776 889999999
Q ss_pred ecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccC
Q 002055 200 LDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGY 279 (974)
Q Consensus 200 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 279 (974)
|++++|.+++.+. +..+++|++|++++|.+++.+ .+..+++|++|+++ |.+.+ ...+..+++|++|++++
T Consensus 117 L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~---~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 117 LTLFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD---LKPLANLTTLERLDISS 186 (466)
T ss_dssp EECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC---CGGGTTCTTCCEEECCS
T ss_pred EECCCCCCCCChH----HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC---chhhccCCCCCEEECcC
Confidence 9999998888754 567888999999888888764 47788888888886 44443 22377888888888888
Q ss_pred cccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcch
Q 002055 280 NNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEIS 359 (974)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 359 (974)
|.+++. ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 887753 347778888888888888876554 66788888888888887753 357778888888888887766432
Q ss_pred hhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhh
Q 002055 360 EILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIH 439 (974)
Q Consensus 360 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~ 439 (974)
+..++. |++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+
T Consensus 261 ------~~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--- 326 (466)
T 1o6v_A 261 ------LSGLTK-LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--- 326 (466)
T ss_dssp ------GTTCTT-CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---
T ss_pred ------hhcCCC-CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---
Confidence 334444 6677777666665443 5666666667776666666533 5566666666666666665433
Q ss_pred hcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcC
Q 002055 440 FVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL 519 (974)
Q Consensus 440 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L 519 (974)
+..+++|+.|++++|++. +. ..+..+++|++|++++|++++..| +..+++|
T Consensus 327 ~~~l~~L~~L~l~~n~l~------------------------~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L 377 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVS------------------------DV--SSLANLTNINWLSAGHNQISDLTP---LANLTRI 377 (466)
T ss_dssp GGGCTTCCEEECCSSCCC------------------------CC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTC
T ss_pred hccCccCCEeECCCCccC------------------------Cc--hhhccCCCCCEEeCCCCccCccch---hhcCCCC
Confidence 445566666666555543 32 356778889999999999987776 5678899
Q ss_pred ceEEecccccccc
Q 002055 520 YLLDLGHNQIHGE 532 (974)
Q Consensus 520 ~~L~Ls~n~l~~~ 532 (974)
+.|++++|.+++.
T Consensus 378 ~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 378 TQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCCEEEECC
T ss_pred CEEeccCCcccCC
Confidence 9999999998864
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=320.16 Aligned_cols=312 Identities=21% Similarity=0.207 Sum_probs=257.2
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|..+. +++++|+|++|.+++. .+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++.++...|.
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 3444443 5899999999999985 678899999999999999999998899999999999999999999999999999
Q ss_pred CCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCC
Q 002055 193 GLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHL 272 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 272 (974)
++++|++|++++|.+...... .+..+++|++|++++|.++++.+..|.++++|++|++++|++++.. +..+..+++|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L 178 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGL 178 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTC
T ss_pred CCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCC
Confidence 999999999999999876432 3467899999999999999999989999999999999999998754 6778899999
Q ss_pred cEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCC
Q 002055 273 LFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGA 352 (974)
Q Consensus 273 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 352 (974)
++|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 99999999999887888999999999999999888888877777779999999999998666678889999999999999
Q ss_pred CCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCccc
Q 002055 353 KLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLH 432 (974)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 432 (974)
.+.+..+. .+..++. |++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 259 ~l~~~~~~----~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 259 PISTIEGS----MLHELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCEECTT----SCTTCTT-CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCccChh----hcccccc-CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 88765544 4455555 677777777666666666666666777777766666665556666666666666666665
Q ss_pred cee
Q 002055 433 GTL 435 (974)
Q Consensus 433 ~~i 435 (974)
...
T Consensus 334 c~c 336 (477)
T 2id5_A 334 CDC 336 (477)
T ss_dssp CSG
T ss_pred Ccc
Confidence 443
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-32 Score=305.98 Aligned_cols=314 Identities=19% Similarity=0.210 Sum_probs=254.8
Q ss_pred cCCCCCCEEECCCCCCCCCCCCc-ccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCC
Q 002055 119 LDLKHLSYLDLSFNDFQGVPIPR-FIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFL 197 (974)
Q Consensus 119 ~~l~~L~~L~Ls~n~i~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 197 (974)
..++++++|+++++.++. +|. .+..+++|++|++++|.+.+..+..|+++++|++|++++|.++.+++..+.++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 456889999999998886 444 46889999999999999988878889999999999999999999888889999999
Q ss_pred CeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEc
Q 002055 198 EHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNL 277 (974)
Q Consensus 198 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 277 (974)
++|++++|.++.++... +..+++|++|++++|+++++++..+..+++|++|++++|++++. .+..+++|++|++
T Consensus 120 ~~L~L~~n~l~~l~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEEC
T ss_pred CEEECCCCccCcCCHHH--hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeec
Confidence 99999999988776532 35688999999999999998888899999999999999998763 3567889999999
Q ss_pred cCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCc
Q 002055 278 GYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQE 357 (974)
Q Consensus 278 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 357 (974)
++|.+++. ...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence 99887742 3346899999999988743 432 357899999999998864 4788899999999999988877
Q ss_pred chhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceech
Q 002055 358 ISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSE 437 (974)
Q Consensus 358 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~ 437 (974)
.|. .+..++. |++|++++|.+.+ +|..+..+++|++|++++|++++. |..+..+++|++|++++|+++..
T Consensus 264 ~~~----~~~~l~~-L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~--- 333 (390)
T 3o6n_A 264 MYH----PFVKMQR-LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL--- 333 (390)
T ss_dssp ESG----GGTTCSS-CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC---
T ss_pred Chh----Hcccccc-CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee---
Confidence 676 5666776 8888888888866 455667788888888888888864 56677788888888888888643
Q ss_pred hhhcCCCCCcEEEcCCcccccccc
Q 002055 438 IHFVNLTKLSVFLVGENTLTLKVR 461 (974)
Q Consensus 438 ~~~~~l~~L~~L~l~~n~l~~~~~ 461 (974)
.+..+++|+.|++++|++.+...
T Consensus 334 -~~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 334 -KLSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp -CCCTTCCCSEEECCSSCEEHHHH
T ss_pred -CchhhccCCEEEcCCCCccchhH
Confidence 25677888888888888876543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-31 Score=321.06 Aligned_cols=330 Identities=21% Similarity=0.169 Sum_probs=274.7
Q ss_pred CCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecccccccccc-ccccccccceeeccCccCCCCCCCC---CCCCcEE
Q 002055 491 QKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSFLRLMANNLSGPLPLI---SSNLIGL 566 (974)
Q Consensus 491 ~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~~---~~~L~~L 566 (974)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+..|.. +++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467788888888776 6777777888888888888888887766 7788888888888888888877654 5788888
Q ss_pred ECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccC
Q 002055 567 DLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRK 646 (974)
Q Consensus 567 ~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 646 (974)
++++|.+++..+ ..++.+++|++|++++|.+++..|..|.++++|++|++++|.+++.. ++.+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred EeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence 999998885443 23467889999999999999988989999999999999999998652 56688999999999
Q ss_pred CcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCC
Q 002055 647 NRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTL 726 (974)
Q Consensus 647 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 726 (974)
|.+++ +...++|+.|++++|.+....+ . ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEEC-S---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred Ccccc-----ccCCchhheeeccCCccccccc-c---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 99874 3455789999999999865433 2 347899999999999874 77999999999999999999988
Q ss_pred ChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCccccccc
Q 002055 727 PNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLK 806 (974)
Q Consensus 727 p~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~ 806 (974)
|..++.++.| +.|+|++|++++ +|..++.++
T Consensus 271 ~~~~~~l~~L------------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 271 YHPFVKMQRL------------------------------------------------ERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp SGGGTTCSSC------------------------------------------------CEEECTTSCCCE-EECSSSCCT
T ss_pred HHHhcCccCC------------------------------------------------CEEECCCCCCCC-CCcccccCC
Confidence 8888776665 789999999996 687888899
Q ss_pred CCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccccCC
Q 002055 807 ALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLG 886 (974)
Q Consensus 807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~ 886 (974)
+|+.|+|++|.++ .+|..++.+++|+.|||++|.+++. | +..+++|++|++++|+++|..+. ..+..+....+.+
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~ 376 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDD 376 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhcccc
Confidence 9999999999999 7898999999999999999999865 3 67789999999999999987543 3455666666778
Q ss_pred C-CCCCCC
Q 002055 887 N-NLCGAP 893 (974)
Q Consensus 887 n-~lcg~~ 893 (974)
+ ..|+.+
T Consensus 377 ~~~~C~~~ 384 (597)
T 3oja_B 377 ADQHCKID 384 (597)
T ss_dssp CCCCCCTT
T ss_pred ccccCCcc
Confidence 7 788764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.7e-31 Score=314.89 Aligned_cols=313 Identities=20% Similarity=0.207 Sum_probs=244.7
Q ss_pred CCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCe
Q 002055 120 DLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEH 199 (974)
Q Consensus 120 ~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 199 (974)
.+.+++.+++++|.+..+ .+..+..+++|++|+|++|.+.+..|..|+++++|++|+|++|.++.+++..|.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 467888888888888763 3344677888999999888888877788888888999999888888888888888888888
Q ss_pred ecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccC
Q 002055 200 LDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGY 279 (974)
Q Consensus 200 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 279 (974)
|++++|.++.++... +..+++|++|++++|.++++++..+..+++|++|++++|.+++. .+..+++|+.|++++
T Consensus 128 L~L~~n~l~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 128 LVLERNDLSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSY 201 (597)
T ss_dssp EECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCS
T ss_pred EEeeCCCCCCCCHHH--hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhhhccc
Confidence 888888888775432 35688888888888888888888888888888888888888763 256678888888888
Q ss_pred cccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcch
Q 002055 280 NNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEIS 359 (974)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 359 (974)
|.+++ +...++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+|
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred Ccccc-----ccCCchhheeeccCCccccc-ccc--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH
Confidence 87764 23446788888888888743 322 236788888888888863 568888888888888888887777
Q ss_pred hhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhh
Q 002055 360 EILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIH 439 (974)
Q Consensus 360 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~ 439 (974)
. .++.++. |+.|++++|.+.+ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++. .
T Consensus 272 ~----~~~~l~~-L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~----~ 340 (597)
T 3oja_B 272 H----PFVKMQR-LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL----K 340 (597)
T ss_dssp G----GGTTCSS-CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC----C
T ss_pred H----HhcCccC-CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc----C
Confidence 6 5666666 8888888888776 46666778888888888888885 466677788888888888888643 2
Q ss_pred hcCCCCCcEEEcCCccccccc
Q 002055 440 FVNLTKLSVFLVGENTLTLKV 460 (974)
Q Consensus 440 ~~~l~~L~~L~l~~n~l~~~~ 460 (974)
+..+++|+.|++++|++.+..
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHHH
T ss_pred hhhcCCCCEEEeeCCCCCChh
Confidence 566778888888888877654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.8e-31 Score=300.89 Aligned_cols=329 Identities=21% Similarity=0.181 Sum_probs=260.9
Q ss_pred CCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecccccccccc-ccccccccceeeccCccCCCCCCCC---CCCCcE
Q 002055 490 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSFLRLMANNLSGPLPLI---SSNLIG 565 (974)
Q Consensus 490 ~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~~---~~~L~~ 565 (974)
.+.+++.+++++|.+. .+|...+..+++|++|++++|.+++..+ .+..+++|++|++++|.+.+..|.. +++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3567888888888776 6777777888888888888888877666 6778888888888888888776653 567888
Q ss_pred EECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEcc
Q 002055 566 LDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLR 645 (974)
Q Consensus 566 L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 645 (974)
|++++|+++...+ ..+..+++|++|++++|.+++..|..+.++++|++|++++|++++. .++.+++|++|+++
T Consensus 122 L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 122 LVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS 194 (390)
T ss_dssp EECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC
T ss_pred EECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc
Confidence 8888888875332 2245688999999999999988888899999999999999998854 25668899999999
Q ss_pred CCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCC
Q 002055 646 KNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGT 725 (974)
Q Consensus 646 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 725 (974)
+|.+++ +...++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 195 ~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 195 YNLLST-----LAIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp SSCCSE-----EECCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccc-----cCCCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence 998874 33456899999999998654 443 357899999999999875 5788999999999999999988
Q ss_pred CChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccc
Q 002055 726 LPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNL 805 (974)
Q Consensus 726 ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l 805 (974)
.|..+..++.| +.|+|++|++++ +|..++.+
T Consensus 264 ~~~~~~~l~~L------------------------------------------------~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 264 MYHPFVKMQRL------------------------------------------------ERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp ESGGGTTCSSC------------------------------------------------CEEECCSSCCCE-EECSSSCC
T ss_pred ChhHccccccC------------------------------------------------CEEECCCCcCcc-cCcccCCC
Confidence 78777666555 789999999985 67777889
Q ss_pred cCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccccC
Q 002055 806 KALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFL 885 (974)
Q Consensus 806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 885 (974)
++|+.|+|++|+++ .+|..++.+++|+.|||++|++++. | +..+++|++|++++|++.+.... ..+..+....+.
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~ 369 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVD 369 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBC
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccc
Confidence 99999999999999 6788899999999999999999854 4 77889999999999999886332 223333333444
Q ss_pred CC-CCCC
Q 002055 886 GN-NLCG 891 (974)
Q Consensus 886 ~n-~lcg 891 (974)
++ ..|+
T Consensus 370 ~~~~~c~ 376 (390)
T 3o6n_A 370 DADQHCK 376 (390)
T ss_dssp CCCSCCC
T ss_pred ccCceec
Confidence 44 4443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.2e-30 Score=286.46 Aligned_cols=306 Identities=24% Similarity=0.311 Sum_probs=209.5
Q ss_pred cCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCC
Q 002055 119 LDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLE 198 (974)
Q Consensus 119 ~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 198 (974)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++.++ .+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCC
Confidence 456677777777777765 33 36677777777777777765433 777777777777777776653 477777777
Q ss_pred eecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEcc
Q 002055 199 HLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLG 278 (974)
Q Consensus 199 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 278 (974)
+|++++|.+...+. +..+++|++|++++|......+ .+..+++|++|++++|.+.+.. .+..+++|++|+++
T Consensus 114 ~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 114 ELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLN 185 (347)
T ss_dssp EEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECT
T ss_pred EEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEcc
Confidence 77777777776654 4567777777777775444333 3677777777777777776532 26677777777777
Q ss_pred CcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcc
Q 002055 279 YNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEI 358 (974)
Q Consensus 279 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 358 (974)
+|.+.+. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.
T Consensus 186 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 186 YNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 7777643 22 6677777777777777775433 6677777777777777775433 77777777777777776653
Q ss_pred hhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechh
Q 002055 359 SEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEI 438 (974)
Q Consensus 359 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~ 438 (974)
+ .+..++. |++|++++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 259 ~-----~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 259 N-----AVKDLTK-LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp G-----GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred h-----hHhcCCC-cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 1 3444554 77777777766654 346677777777777777777777777777777777777777775544
Q ss_pred hhcCCCCCcEEEcCCcccc
Q 002055 439 HFVNLTKLSVFLVGENTLT 457 (974)
Q Consensus 439 ~~~~l~~L~~L~l~~n~l~ 457 (974)
+..+++|+.|++++|+++
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 566777777777777653
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.3e-29 Score=282.43 Aligned_cols=303 Identities=22% Similarity=0.328 Sum_probs=260.2
Q ss_pred CceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCC
Q 002055 82 GHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVG 161 (974)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 161 (974)
.+++.|+++++ .+ ..++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+
T Consensus 44 ~~L~~L~l~~~----------------~i-~~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~ 102 (347)
T 4fmz_A 44 ESITKLVVAGE----------------KV-ASIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD 102 (347)
T ss_dssp TTCSEEECCSS----------------CC-CCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC
T ss_pred ccccEEEEeCC----------------cc-ccch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC
Confidence 47889999884 22 2333 48889999999999999997 444 8999999999999999986
Q ss_pred CCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCC
Q 002055 162 MIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPV 241 (974)
Q Consensus 162 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 241 (974)
. +.+.++++|++|++++|.+..++. +..+++|++|++++|....... .+..+++|++|++++|.+.+..+ +
T Consensus 103 ~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 103 I--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp C--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred c--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh--h
Confidence 3 469999999999999999988766 8999999999999995444322 25789999999999999988766 8
Q ss_pred cCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCC
Q 002055 242 ANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLE 321 (974)
Q Consensus 242 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 321 (974)
..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDI--SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246 (347)
T ss_dssp GGCTTCSEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEEccCCccccc--cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence 8999999999999999873 33 8899999999999999986543 8899999999999999986544 88999999
Q ss_pred EEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEe
Q 002055 322 HLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLD 401 (974)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 401 (974)
+|++++|.+++. ..+..+++|++|++++|.+.+. + .+..++. |+.|++++|.+.+..+..+..+++|++|+
T Consensus 247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQ-LNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTT-CSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCC-CCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 999999999864 4689999999999999998874 2 4556676 99999999999999999999999999999
Q ss_pred ccCccCCCCcccccCCCCCCCEEEccCCccc
Q 002055 402 LSNNSIVGLVPQSFGRLSSLRVLQLYRNKLH 432 (974)
Q Consensus 402 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 432 (974)
+++|++++..| +..+++|++|++++|.++
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999866 889999999999999875
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.2e-31 Score=291.68 Aligned_cols=279 Identities=19% Similarity=0.190 Sum_probs=212.2
Q ss_pred CCCHHHHHHHHHhhhcC-CCCCCCCCCC----CCCCCCccccceeeCC--------CCCceEEEEcCCCCccccCCCccc
Q 002055 37 GCLESEREALLRFKQDL-QDPSYRLASW----IGNRDCCAWAGIFCDN--------VTGHIVELNLRNPFTYYVQPDQYE 103 (974)
Q Consensus 37 ~~~~~~~~~ll~~k~~~-~~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~~ 103 (974)
++..+|+.||++||+++ .++.+...+| ....++|.|.|+.|.. ...+|+.|+|+++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n----------- 91 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV----------- 91 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-----------
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-----------
Confidence 46678999999999988 4676667889 4567899999999952 3468888888873
Q ss_pred cCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCc
Q 002055 104 ANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFL 183 (974)
Q Consensus 104 ~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i 183 (974)
.+. .+|+.++++++|++|+|++|.++. +|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+
T Consensus 92 -----~l~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 92 -----PLP-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp -----CCS-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred -----Cch-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 333 778888888888888888888883 7888888888888888888888 6788888888888888888665
Q ss_pred cccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCCh
Q 002055 184 HLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVP 263 (974)
Q Consensus 184 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 263 (974)
....+..+.. ..+ ...+..+++|++|++++|+++.+ +..+.++++|++|++++|++++ +|
T Consensus 163 ~~~~p~~~~~------~~~-----------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~--l~ 222 (328)
T 4fcg_A 163 LTELPEPLAS------TDA-----------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA--LG 222 (328)
T ss_dssp CCCCCSCSEE------EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC--CC
T ss_pred ccccChhHhh------ccc-----------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc--Cc
Confidence 4433332221 000 00123356666666666666633 3457777788888888888775 35
Q ss_pred hhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCC
Q 002055 264 SWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCN 343 (974)
Q Consensus 264 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 343 (974)
..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcEEEccCCCCC
Q 002055 344 LKRLYLSGAKLN 355 (974)
Q Consensus 344 L~~L~L~~n~l~ 355 (974)
|+.+++..+.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 888888766543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.9e-33 Score=322.53 Aligned_cols=362 Identities=20% Similarity=0.119 Sum_probs=201.8
Q ss_pred CCCCEEeccCccCCCCcccc-cCCCCCCCEEEccCCcccce----echhhhcCCCCCcEEEcCCccccccccCCCCCccc
Q 002055 395 KNLDSLDLSNNSIVGLVPQS-FGRLSSLRVLQLYRNKLHGT----LSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQ 469 (974)
Q Consensus 395 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 469 (974)
++|++|++++|.++...... +..+++|++|++++|.+++. ++. .+..+++|++|++++|.+......
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~------- 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVH------- 74 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHH-------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHH-------
Confidence 46777788777776543332 55677777777777776532 121 344455555555555544321110
Q ss_pred ceeEeccCCCCCCCCCccccCCC----CCCEEeCCCCCCcCCc---ChhHHhhcCcCceEEecccccccccc-ccccccc
Q 002055 470 LIELGLRSCNVGSRFPLWLYSQK----DLQFLDLFNSGISGTF---PNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQ 541 (974)
Q Consensus 470 L~~L~l~~~~~~~~~p~~l~~~~----~L~~L~Ls~n~~~~~~---p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~ 541 (974)
.....++ +|++|++++|++.+.. ....+..+++|++|++++|.+++..+ .+..
T Consensus 75 ----------------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--- 135 (461)
T 1z7x_W 75 ----------------CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--- 135 (461)
T ss_dssp ----------------HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH---
T ss_pred ----------------HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH---
Confidence 0001111 4555555555554211 11122334445555555554432211 1100
Q ss_pred cceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccc-----cCCCCC
Q 002055 542 LSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWM-----SYQNLM 616 (974)
Q Consensus 542 L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~ 616 (974)
.+.....+|++|++++|++++.....++..+..+++|++|++++|.+++..+..+. ..++|+
T Consensus 136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 00111235677777777776655555556666677777777777776654333332 245777
Q ss_pred eeeCCCcccccc----CCccccCCCCccEEEccCCcccccC-----CcccccCCCCCeEeccCCccccc----CchhHHh
Q 002055 617 MLDLSNNKFIGN----LPTSFGSLSSLVSLHLRKNRLSGTM-----PISLKNCTSLMTLDVGENEFFGN----IPSWFGE 683 (974)
Q Consensus 617 ~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~ 683 (974)
+|++++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+.
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~- 281 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-
Confidence 777777777653 4555666777777777777766432 22223467777777777776543 444444
Q ss_pred hhhhhhhhhccCCccccccCccccC-----CCCCcEEEccCCcCCCC----CChhhcccccccccCCCccCccccccCCC
Q 002055 684 MFSIMVFLILRSNYFHGLLPTKLCD-----LAFLQILDLADNNLSGT----LPNCIHNLTAMATVNPFTGNAIKYSIPLN 754 (974)
Q Consensus 684 ~~~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~g~----ip~~~~~l~~l~~l~~~~~~~~~~~~~~~ 754 (974)
.+++|+.|++++|.+++..+..+.. .++|+.|++++|++++. +|..+..+
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~--------------------- 340 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN--------------------- 340 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC---------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC---------------------
Confidence 3566666666666665443333322 25677777777776644 22222222
Q ss_pred ccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCccccc-----ccCCCEEEccCceeee----ecccc
Q 002055 755 STYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTN-----LKALQSLNLSYNIFTG----RIPET 825 (974)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~ip~~ 825 (974)
+.|+.|||++|++++..+..+.. .++|+.|+|++|++++ .+|..
T Consensus 341 ---------------------------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 341 ---------------------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp ---------------------------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred ---------------------------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 23366777777776655544432 5577777777777775 67777
Q ss_pred ccccCCCCEEECCCCccccc
Q 002055 826 IGAMRSLESIDFSVNKFTGE 845 (974)
Q Consensus 826 l~~l~~L~~LdLs~N~l~g~ 845 (974)
+..+++|++||+++|++++.
T Consensus 394 l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHH
T ss_pred HHhCCCccEEECCCCCCCHH
Confidence 77777777777777777654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.3e-29 Score=275.40 Aligned_cols=291 Identities=23% Similarity=0.293 Sum_probs=226.1
Q ss_pred CCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeec
Q 002055 122 KHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLD 201 (974)
Q Consensus 122 ~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 201 (974)
.++++++++++.++. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.++.+.+..|.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 379999999999985 676653 7999999999999988888999999999999999999999889999999999999
Q ss_pred CccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCC-CCChhhhcCCCCCcEEEccCc
Q 002055 202 FSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDN-SFVPSWVFGLSHLLFLNLGYN 280 (974)
Q Consensus 202 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n 280 (974)
+++|.++.++... .++|++|++++|+++.+++..+.++++|++|++++|.++. ...+..+..+ +|++|++++|
T Consensus 109 L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 9999998876532 2789999999999998888888999999999999998853 1225566666 8889999998
Q ss_pred ccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchh
Q 002055 281 NFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISE 360 (974)
Q Consensus 281 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 360 (974)
++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+
T Consensus 183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l-- 256 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV-- 256 (332)
T ss_dssp BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC--
T ss_pred CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec--
Confidence 8885 555443 68888888888888777778888888888888888888777777888888888888888765 23
Q ss_pred hhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCC------CCCCCEEEccCCccc-c
Q 002055 361 ILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGR------LSSLRVLQLYRNKLH-G 433 (974)
Q Consensus 361 ~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~-~ 433 (974)
|..+..+++|++|++++|++++..+..+.. .++|+.|++++|.+. .
T Consensus 257 ---------------------------p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 257 ---------------------------PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp ---------------------------CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred ---------------------------ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 334555666777777777776665555543 255777777777765 1
Q ss_pred eechhhhcCCCCCcEEEcCCcc
Q 002055 434 TLSEIHFVNLTKLSVFLVGENT 455 (974)
Q Consensus 434 ~i~~~~~~~l~~L~~L~l~~n~ 455 (974)
.++...|..+++|+.+++++|+
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 2344467777777777777663
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.9e-28 Score=270.70 Aligned_cols=269 Identities=22% Similarity=0.285 Sum_probs=131.1
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEE
Q 002055 148 NLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELD 227 (974)
Q Consensus 148 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 227 (974)
+|++|++++|++++..+..|+++++|++|++++|.++.+.+..|.++++|++|++++|.++.++.. ..++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-----hcccccEEE
Confidence 444444444444443333444444444444444444444444444444444444444444433221 114455555
Q ss_pred cCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCC-CChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCC
Q 002055 228 LSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNS-FVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHF 306 (974)
Q Consensus 228 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 306 (974)
+++|++++.++..+.++++|++|++++|.+... ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 555555555444455555555555555555321 113445555555555555555552 333322 4555555555555
Q ss_pred CCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCccc
Q 002055 307 NSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGH 386 (974)
Q Consensus 307 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 386 (974)
++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------------~ 254 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------------------------------K 254 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS------------------------------S
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc------------------------------c
Confidence 5544555555555555555555555444444555555555555555443 1
Q ss_pred ccccccCCCCCCEEeccCccCCCCcccccCC------CCCCCEEEccCCcccc-eechhhhcCCCCCcEEEcCCc
Q 002055 387 LTDQIGLFKNLDSLDLSNNSIVGLVPQSFGR------LSSLRVLQLYRNKLHG-TLSEIHFVNLTKLSVFLVGEN 454 (974)
Q Consensus 387 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~l~~n 454 (974)
+|.++..+++|++|++++|++++..+..|.. .+.++.|++++|.+.. .++...|..+..++.+++++|
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2233444555555555555555554444432 2456666666666542 233345666666666666665
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.8e-32 Score=312.64 Aligned_cols=395 Identities=19% Similarity=0.149 Sum_probs=184.2
Q ss_pred CCCcEEEcCCCCCCCCCCCC-CcCCCCCCEEeCCCCCCCCC---CChhhhcCCCCCcEEEccCcccccCCCccc-CCCC-
Q 002055 221 PSLVELDLSNCQLHIFPPLP-VANFSTLTTLDLSHNQFDNS---FVPSWVFGLSHLLFLNLGYNNFHGPIPEGL-QSLT- 294 (974)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~- 294 (974)
++|++|++++|+++...... +..+++|++|++++|++++. .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555666555555443222 34455555555555554421 112334444555555555554443211111 1122
Q ss_pred ---CCCEEEcCCCCCCC----CchhhhhcCCCCCEEECcCCCCCCCchHhhhc-----CCCCcEEEccCCCCCCcchhhh
Q 002055 295 ---SLKHLDLSFNHFNS----SIPNLLCRLTHLEHLSLSHNSLEGRIPRSMAR-----LCNLKRLYLSGAKLNQEISEIL 362 (974)
Q Consensus 295 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~~ 362 (974)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~- 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP- 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence 35555555554442 23444444445555555554444322222221 234444444444444332221
Q ss_pred hhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccC-----CCCCCCEEEccCCcccce---
Q 002055 363 DIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFG-----RLSSLRVLQLYRNKLHGT--- 434 (974)
Q Consensus 363 ~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~--- 434 (974)
++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 162 ------------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 162 ------------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp ------------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred ------------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 233344455555555555555443222222 234555566655555432
Q ss_pred -echhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCC----cC
Q 002055 435 -LSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGT----FP 509 (974)
Q Consensus 435 -i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~----~p 509 (974)
++. .+..+++|+.|++++|.+.......+ .+.....+++|++|++++|++++. ++
T Consensus 218 ~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 218 DLCG-IVASKASLRELALGSNKLGDVGMAEL-------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp HHHH-HHHHCTTCCEEECCSSBCHHHHHHHH-------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred HHHH-HHHhCCCccEEeccCCcCChHHHHHH-------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 222 34455555555555555432211000 011112345566666666665532 22
Q ss_pred hhHHhhcCcCceEEecccccccccc-ccccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcC
Q 002055 510 NRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAG 588 (974)
Q Consensus 510 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 588 (974)
.. +..+++|++|++++|.+.+..+ .+... +....++|++|++++|.+++.....++..+..+
T Consensus 278 ~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~----------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 278 RV-LRAKESLKELSLAGNELGDEGARLLCET----------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp HH-HHHCTTCCEEECTTCCCHHHHHHHHHHH----------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred HH-HhhCCCcceEECCCCCCchHHHHHHHHH----------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 21 2335566666666665543211 11100 001123556666666666554444444555566
Q ss_pred CcccccccccccccccCCccccc-----CCCCCeeeCCCccccc----cCCccccCCCCccEEEccCCcccccCCcccc-
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMS-----YQNLMMLDLSNNKFIG----NLPTSFGSLSSLVSLHLRKNRLSGTMPISLK- 658 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~- 658 (974)
++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.-...+.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 67777777777666544433332 4567777777777664 5566666667777777777766543111111
Q ss_pred ----cCCCCCeEeccCCcccccC
Q 002055 659 ----NCTSLMTLDVGENEFFGNI 677 (974)
Q Consensus 659 ----~l~~L~~L~Ls~N~l~~~~ 677 (974)
....|+.|++.++.+....
T Consensus 421 ~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 421 SVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp HHTSTTCCCCEEECTTCCCCHHH
T ss_pred HhccCCcchhheeecccccCHHH
Confidence 1335666666665554433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-27 Score=263.53 Aligned_cols=275 Identities=20% Similarity=0.219 Sum_probs=227.7
Q ss_pred CCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeec
Q 002055 122 KHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLD 201 (974)
Q Consensus 122 ~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 201 (974)
+++++|++++|.+++. .+..++.+++|++|++++|.+++..|..|+++++|++|++++|.++.++...+ ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEE
Confidence 6899999999999985 55679999999999999999998889999999999999999999998776554 7999999
Q ss_pred CccccCCCcchhHHhhcCCCCCcEEEcCCCCCCC--CCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccC
Q 002055 202 FSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHI--FPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGY 279 (974)
Q Consensus 202 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 279 (974)
+++|.+...+.. .+..+++|++|++++|.++. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++
T Consensus 128 l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 128 VHENEITKVRKS--VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--PSLTELHLDG 201 (330)
T ss_dssp CCSSCCCBBCHH--HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSCC--TTCSEEECTT
T ss_pred CCCCcccccCHh--HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcccc--ccCCEEECCC
Confidence 999999987543 34779999999999999975 677789999999999999999986 354443 8999999999
Q ss_pred cccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcch
Q 002055 280 NNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEIS 359 (974)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 359 (974)
|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 9999888899999999999999999999877778999999999999999999 788889999999999999999887544
Q ss_pred hhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCC--CcccccCCCCCCCEEEccCCc
Q 002055 360 EILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVG--LVPQSFGRLSSLRVLQLYRNK 430 (974)
Q Consensus 360 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~ 430 (974)
.. +.... .....+.++.+++++|.+.. ..|..+..+++++.+++++|+
T Consensus 281 ~~----f~~~~-------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 281 ND----FCPPG-------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TS----SSCSS-------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hh----cCCcc-------------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 41 11100 01123567777777777653 456677777788888887774
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6e-28 Score=266.93 Aligned_cols=281 Identities=21% Similarity=0.206 Sum_probs=231.0
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|..+. ++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..|+++++|++|++++|.++.++...+
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~- 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-
Confidence 4555553 6899999999999875 56789999999999999999998889999999999999999999998776655
Q ss_pred CCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCC--CCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCC
Q 002055 193 GLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHI--FPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLS 270 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 270 (974)
++|++|++++|.+..++.. .+..+++|++|++++|.++. ..+..+..+ +|++|++++|++++ +|..+. +
T Consensus 123 --~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~~~~--~ 193 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKG--VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPKDLP--E 193 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSG--GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCSSSC--S
T ss_pred --ccCCEEECCCCccCccCHh--HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCcccc--C
Confidence 8999999999999987543 34779999999999999964 677788888 99999999999987 355443 7
Q ss_pred CCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEcc
Q 002055 271 HLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLS 350 (974)
Q Consensus 271 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (974)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 9999999999999888889999999999999999999888888999999999999999999 788889999999999999
Q ss_pred CCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCC--CCcccccCCCCCCCEEEccC
Q 002055 351 GAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIV--GLVPQSFGRLSSLRVLQLYR 428 (974)
Q Consensus 351 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~ 428 (974)
+|++++..+. .+..... -...++|+.|++++|.+. +..|..+..+++|+.+++++
T Consensus 273 ~N~l~~~~~~----~~~~~~~-------------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 273 TNNITKVGVN----DFCPVGF-------------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SSCCCBCCTT----SSSCSSC-------------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CCCCCccChh----Hcccccc-------------------ccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 9998865444 1111100 011356777777777776 55666777778888888877
Q ss_pred Cc
Q 002055 429 NK 430 (974)
Q Consensus 429 n~ 430 (974)
|+
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 64
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.3e-29 Score=272.01 Aligned_cols=226 Identities=19% Similarity=0.220 Sum_probs=179.7
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
...++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467889999999988 77888888999999999999998 88988999999999999999998 7888999999999999
Q ss_pred ccCCcccccCchhHHh--------hhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhccccccccc
Q 002055 668 VGENEFFGNIPSWFGE--------MFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATV 739 (974)
Q Consensus 668 Ls~N~l~~~~p~~~~~--------~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l 739 (974)
+++|++.+.+|..+.. .+++|++|++++|+++ .+|..+.++++|+.|++++|++++ +|..++.+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 9999988999887641 2677777777777776 667777777777777777777773 55555544443
Q ss_pred CCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceee
Q 002055 740 NPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFT 819 (974)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 819 (974)
+.|||++|++.+.+|..++++++|+.|+|++|++.
T Consensus 232 ---------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 232 ---------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp ---------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred ---------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 56777777777777777777777777777777777
Q ss_pred eeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCee
Q 002055 820 GRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 866 (974)
Q Consensus 820 g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l 866 (974)
+.+|.+++.+++|+.|||++|++.|.+|.+++++++|+.++++.|.+
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777777777777777777777777777777777777776643
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=270.82 Aligned_cols=279 Identities=19% Similarity=0.184 Sum_probs=223.2
Q ss_pred cccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeee
Q 002055 540 SQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLD 619 (974)
Q Consensus 540 ~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 619 (974)
+.....+++++.++......++++++|++++|++++..+ ..+..+++|++|++++|.+++..|..|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334445666666665544456788888888888876443 2456788999999999999988888899999999999
Q ss_pred CCCccccccCCccccCCCCccEEEccCCcccccCC-cccccCCCCCeEeccCCc-ccccCchhHHhhhhhhhhhhccCCc
Q 002055 620 LSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMP-ISLKNCTSLMTLDVGENE-FFGNIPSWFGEMFSIMVFLILRSNY 697 (974)
Q Consensus 620 Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~L~~L~L~~N~ 697 (974)
+++|++++..+..++.+++|++|++++|++++..+ ..+.++++|++|++++|. +.+..|..+. .+++|+.|++++|+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCC
Confidence 99999986555568899999999999999985433 478899999999999995 5555556666 68899999999999
Q ss_pred cccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchh
Q 002055 698 FHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADY 777 (974)
Q Consensus 698 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (974)
+++..|..+.++++|+.|++++|+++ .+|..+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~---------------------------------------------- 218 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV---------------------------------------------- 218 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHH----------------------------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhh----------------------------------------------
Confidence 99998999999999999999999885 4443221
Q ss_pred hhccceeeEEEeccccceecCCcccc---cccCCCEEEccCceeee----eccccccccCCCCEEECCCCcccccCCcc-
Q 002055 778 SEILNLVRIIDVSKNFFSGTLPIGLT---NLKALQSLNLSYNIFTG----RIPETIGAMRSLESIDFSVNKFTGEIPQS- 849 (974)
Q Consensus 778 ~~~l~~l~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l~g~iP~~- 849 (974)
..++.|+.||+++|++++..+..+. ....++.++|++|.+++ .+|+.++.+++|+.|||++|+++ .+|..
T Consensus 219 -~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 219 -DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp -HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 1233458999999999976655443 46778899999999887 58889999999999999999999 67777
Q ss_pred ccCCCCCCeeecccCeeeecCCC
Q 002055 850 MSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 850 l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
++++++|++|++++|++.|.+|.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCCCCCEEEeeCCCccCcCCC
Confidence 48999999999999999999874
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.3e-30 Score=309.41 Aligned_cols=425 Identities=14% Similarity=0.056 Sum_probs=297.4
Q ss_pred ccCcCcCCCCCCEEECCCCCCC---CCCCCcccC------------CCCCCCEEeCCCCCCCCCCccccCC-CC-CCCEE
Q 002055 114 VNPSLLDLKHLSYLDLSFNDFQ---GVPIPRFIG------------SMGNLKYLNLSGSRFVGMIPHQLGN-LS-SLQYL 176 (974)
Q Consensus 114 l~~~l~~l~~L~~L~Ls~n~i~---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~~~~-l~-~L~~L 176 (974)
++..+..+++|++|+|+++... +. +|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445567888999999876421 11 232222 7899999999999887766666655 34 49999
Q ss_pred EcCCCC-ccccCcc-ccCCCCCCCeecCccccCCCcch--hHHhhcCCCCCcEEEcCCCCCCCCCC----CCCcCCCCCC
Q 002055 177 VLSRNF-LHLVNFG-WLSGLSFLEHLDFSYVNLSKASD--WLLVTHMLPSLVELDLSNCQLHIFPP----LPVANFSTLT 248 (974)
Q Consensus 177 ~Ls~n~-i~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~ 248 (974)
++++|. ++..... ....+++|++|++++|.+++... .......+++|++|++++|.+++... ..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 999886 2222221 23478999999999998765522 33344668999999999999875443 3345789999
Q ss_pred EEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccc---cCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEEC
Q 002055 249 TLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFH---GPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSL 325 (974)
Q Consensus 249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 325 (974)
+|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.|+++++.. ..+|..+..+++|++|++
T Consensus 224 ~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 224 SVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDL 300 (592)
T ss_dssp EEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEE
T ss_pred EEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEec
Confidence 99999998876 4788889999999999864332 23445678889999999988643 467888888999999999
Q ss_pred cCCCCCCCch-HhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCC-----------CCCccc-cccccc
Q 002055 326 SHNSLEGRIP-RSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPN-----------SSIFGH-LTDQIG 392 (974)
Q Consensus 326 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~p~~l~ 392 (974)
++|.+++... ..+..+++|++|+++++...+.++. ....++. |++|++++ +.+++. ++....
T Consensus 301 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~-L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV----LAQYCKQ-LKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----HHHHCTT-CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----HHHhCCC-CCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 9999765444 4468899999999983322222222 3345666 99999994 455443 233345
Q ss_pred CCCCCCEEeccCccCCCCcccccCC-CCCCCEEEcc----CCcccce-----echhhhcCCCCCcEEEcCCcc--ccccc
Q 002055 393 LFKNLDSLDLSNNSIVGLVPQSFGR-LSSLRVLQLY----RNKLHGT-----LSEIHFVNLTKLSVFLVGENT--LTLKV 460 (974)
Q Consensus 393 ~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----i~~~~~~~l~~L~~L~l~~n~--l~~~~ 460 (974)
.+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++. .+.++++|+.|+++.+. ++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHH
Confidence 6899999999888888776666665 8899999996 6677653 222 35678999999997543 43332
Q ss_pred cCCCC-CcccceeEeccCCCCCC-CCCccccCCCCCCEEeCCCCCCcCCcChhHHhhcCcCceEEecccccccccc-cc-
Q 002055 461 RRDWI-PPFQLIELGLRSCNVGS-RFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NL- 536 (974)
Q Consensus 461 ~~~~~-~~~~L~~L~l~~~~~~~-~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l- 536 (974)
...+. ..++|+.|++++|.+.+ .++..+..+++|++|++++|.+++.....+...+++|++|++++|+++..-. .+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 22222 25678888888888765 3455667788899999999988766566666778889999999998775422 22
Q ss_pred ccccccceeecc
Q 002055 537 TKASQLSFLRLM 548 (974)
Q Consensus 537 ~~~~~L~~L~l~ 548 (974)
..++.+....+.
T Consensus 535 ~~~p~l~~~~~~ 546 (592)
T 3ogk_B 535 MARPYWNIELIP 546 (592)
T ss_dssp GCCTTEEEEEEC
T ss_pred HhCCCcEEEEec
Confidence 234555544443
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-28 Score=295.13 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=31.3
Q ss_pred cCCCCCeeeCCCccccccCCccccC-CCCccEEEcc----CCccccc-----CCcccccCCCCCeEeccCC
Q 002055 611 SYQNLMMLDLSNNKFIGNLPTSFGS-LSSLVSLHLR----KNRLSGT-----MPISLKNCTSLMTLDVGEN 671 (974)
Q Consensus 611 ~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~p~~l~~l~~L~~L~Ls~N 671 (974)
.+++|++|+++.|.+++..+..++. +++|++|+++ .|++++. ++..+.++++|+.|++++|
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 3555555555555555444444443 5556666654 4444432 2233455666666666543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=258.66 Aligned_cols=233 Identities=23% Similarity=0.234 Sum_probs=173.1
Q ss_pred CcccccccccccccccCCcccccCCCCCeeeCCCccccc--cCCccccCCCCccEEEccCCcccccCCcccccCCCCCeE
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIG--NLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTL 666 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 666 (974)
+++++|++++|.++...+..|.++++|++|++++|++.. ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 345566666666654333446677777777777777652 23555566777777777777776 355567777777777
Q ss_pred eccCCcccccCc-hhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCC-CCChhhcccccccccCCCcc
Q 002055 667 DVGENEFFGNIP-SWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSG-TLPNCIHNLTAMATVNPFTG 744 (974)
Q Consensus 667 ~Ls~N~l~~~~p-~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~l~~~~~ 744 (974)
++++|++.+..+ ..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|++++ .+|..+..++.|
T Consensus 107 ~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred ECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence 777777765444 3344 56777777777777777777778888888888888888876 456555554443
Q ss_pred CccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccc
Q 002055 745 NAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPE 824 (974)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 824 (974)
+.||+++|++++..|..++++++|+.|+|++|++++..+.
T Consensus 178 ----------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 178 ----------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ----------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ----------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 6788888888887788888888999999999999877777
Q ss_pred cccccCCCCEEECCCCcccccCCccccCC-CCCCeeecccCeeeecCC
Q 002055 825 TIGAMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 825 ~l~~l~~L~~LdLs~N~l~g~iP~~l~~l-~~L~~L~ls~N~l~g~iP 871 (974)
.++.+++|+.|||++|++++.+|..+..+ ++|++|++++|+++|..+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 88888999999999999998888888888 489999999999888654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.9e-27 Score=259.74 Aligned_cols=276 Identities=21% Similarity=0.242 Sum_probs=221.1
Q ss_pred ceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccc--cCCcccccCCCCCeeeC
Q 002055 543 SFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQG--NLPDCWMSYQNLMMLDL 620 (974)
Q Consensus 543 ~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L 620 (974)
+.++++++.++......++++++|++++|+++...+ ..+..+++|++|++++|.++. ..|..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 345555555554444445678888888888774322 234567889999999998873 34667778899999999
Q ss_pred CCccccccCCccccCCCCccEEEccCCcccccCC-cccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccc
Q 002055 621 SNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMP-ISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFH 699 (974)
Q Consensus 621 s~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~ 699 (974)
++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence 999987 567778889999999999999986655 5788999999999999999888887776 6889999999999998
Q ss_pred c-ccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhh
Q 002055 700 G-LLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYS 778 (974)
Q Consensus 700 ~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (974)
+ .+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------ 201 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------------------------ 201 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------------------
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC------------------------------------------
Confidence 7 688899999999999999999998778777666555
Q ss_pred hccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccccc-CCCCEEECCCCcccccCCc--cccCCCC
Q 002055 779 EILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAM-RSLESIDFSVNKFTGEIPQ--SMSSLTF 855 (974)
Q Consensus 779 ~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~LdLs~N~l~g~iP~--~l~~l~~ 855 (974)
+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|+.|||++|.+++..+. ...-+..
T Consensus 202 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 202 ------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp ------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred ------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 789999999998777789999999999999999999999999998 5999999999999975431 1122344
Q ss_pred CCeeecccCeeeecCCC
Q 002055 856 LNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 856 L~~L~ls~N~l~g~iP~ 872 (974)
.+.+.+..+.+.+..|.
T Consensus 276 ~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 276 QRQLLVEVERMECATPS 292 (306)
T ss_dssp TGGGBSCGGGCBEEESG
T ss_pred hhhhhccccccccCCch
Confidence 55667778888888885
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=256.82 Aligned_cols=284 Identities=23% Similarity=0.249 Sum_probs=208.1
Q ss_pred cCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCC
Q 002055 117 SLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSF 196 (974)
Q Consensus 117 ~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 196 (974)
+-..++.....+.+++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++.+.+..|.++++
T Consensus 26 ~~~~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp -CCEECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 33455666678999999986 676554 58999999999999877778999999999999999999988888999999
Q ss_pred CCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCC-CCCcCCCCCCEEeCCCCC-CCCCCChhhhcCCCCCcE
Q 002055 197 LEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPP-LPVANFSTLTTLDLSHNQ-FDNSFVPSWVFGLSHLLF 274 (974)
Q Consensus 197 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~ 274 (974)
|++|++++|+++.++.. .+..+++|++|++++|+++.++. ..+.++++|++|++++|. +.+ ..+..+..+++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSS--WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEE 178 (353)
T ss_dssp CCEEECCSSCCSSCCHH--HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEE
T ss_pred CCEEECCCCcCCcCCHh--HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCE
Confidence 99999999998887543 24668888888888888887776 677888888888888874 443 22556777777777
Q ss_pred EEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhh---cCCCCcEEEccC
Q 002055 275 LNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMA---RLCNLKRLYLSG 351 (974)
Q Consensus 275 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~ 351 (974)
|++++|++++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+. ....++.
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~----- 253 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK----- 253 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE-----
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhc-----
Confidence 88877777776677777777777777777777533333344577777777777777654332221 2333444
Q ss_pred CCCCCcchhhhhhhcccCCCCCceeeCCCCCCcc----cccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEcc
Q 002055 352 AKLNQEISEILDIFSGCVPNGLESLVLPNSSIFG----HLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLY 427 (974)
Q Consensus 352 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 427 (974)
++++++.+.+ .+|..+..+++|++|++++|+++...+..+..+++|++|+++
T Consensus 254 ------------------------l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 254 ------------------------FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp ------------------------EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ------------------------cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 4444444333 356677788888888998888886544445788888888888
Q ss_pred CCcccceec
Q 002055 428 RNKLHGTLS 436 (974)
Q Consensus 428 ~n~l~~~i~ 436 (974)
+|++.+..+
T Consensus 310 ~N~~~~~~~ 318 (353)
T 2z80_A 310 TNPWDCSCP 318 (353)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCcCC
Confidence 888887665
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.8e-28 Score=265.64 Aligned_cols=256 Identities=19% Similarity=0.207 Sum_probs=151.1
Q ss_pred cccccceeeccCccCCCCCCC-CCCCCcEEECcCCcc-ccccchhhH---HhhhcCCcccccccccccccccCCccc--c
Q 002055 538 KASQLSFLRLMANNLSGPLPL-ISSNLIGLDLSGNSF-SGSIFHFLC---YTINAGMKLQFLFLDRNILQGNLPDCW--M 610 (974)
Q Consensus 538 ~~~~L~~L~l~~n~l~~~~p~-~~~~L~~L~Ls~n~l-~~~~~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~p~~l--~ 610 (974)
..++|+.+++++|.+ .+|. ....++.|++++|.+ .+.++.... ....++++|++|++++|.+++.+|..+ .
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 344566666666666 3443 123355555555555 222332111 011124445555555555554444443 4
Q ss_pred cCCCCCeeeCCCccccccCCccccCC-----CCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhh
Q 002055 611 SYQNLMMLDLSNNKFIGNLPTSFGSL-----SSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMF 685 (974)
Q Consensus 611 ~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 685 (974)
.+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..|+++++|++|++++|++.+.++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------- 190 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------- 190 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-------
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-------
Confidence 445555555555555443 4444433 445555555555544444444445555555555544433211
Q ss_pred hhhhhhhccCCccccccCccc--cCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccc
Q 002055 686 SIMVFLILRSNYFHGLLPTKL--CDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVT 763 (974)
Q Consensus 686 ~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 763 (974)
+|..+ ..+++|+.|++++|++++ +|....
T Consensus 191 ----------------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-------------------------------- 221 (312)
T 1wwl_A 191 ----------------LISALCPLKFPTLQVLALRNAGMET-PSGVCS-------------------------------- 221 (312)
T ss_dssp ----------------HHHHSCTTSCTTCCEEECTTSCCCC-HHHHHH--------------------------------
T ss_pred ----------------HHHHHHhccCCCCCEEECCCCcCcc-hHHHHH--------------------------------
Confidence 12223 677888888888888872 111100
Q ss_pred eeeEEEEecccchhhhccceeeEEEeccccceecCC-cccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcc
Q 002055 764 EQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLP-IGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKF 842 (974)
Q Consensus 764 ~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 842 (974)
.....++.|+.|||++|++++.+| ..+..+++|+.|+|++|+|+ .+|..+. ++|+.|||++|++
T Consensus 222 ------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 222 ------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp ------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred ------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence 001123345789999999998776 45667899999999999998 8888877 8899999999999
Q ss_pred cccCCccccCCCCCCeeecccCeeeec
Q 002055 843 TGEIPQSMSSLTFLNHLNLSNNYLTGK 869 (974)
Q Consensus 843 ~g~iP~~l~~l~~L~~L~ls~N~l~g~ 869 (974)
++. |. +..+++|++|++++|++++.
T Consensus 287 ~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 287 DRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 976 76 88999999999999998763
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=259.15 Aligned_cols=236 Identities=23% Similarity=0.238 Sum_probs=202.9
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|..+. +++++|+|++|.++++ .|..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++.++...|.
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 3444443 6899999999999985 678899999999999999999988889999999999999999999999998999
Q ss_pred CCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCC-CCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCC
Q 002055 193 GLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSN-CQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSH 271 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 271 (974)
.+++|++|++++|.+..++.. .+..+++|++|++++ +.+..++...+.++++|++|++++|++++. ..+..+++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~ 219 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVG 219 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTT
T ss_pred ccCCCCEEECCCCCcceeCHh--HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---cccccccc
Confidence 999999999999999877543 346788999999998 567777777888999999999999998862 35778889
Q ss_pred CcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccC
Q 002055 272 LLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSG 351 (974)
Q Consensus 272 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (974)
|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 99999999999888888899999999999999999888788888899999999999999877777788889999999999
Q ss_pred CCCCC
Q 002055 352 AKLNQ 356 (974)
Q Consensus 352 n~l~~ 356 (974)
|++..
T Consensus 300 Np~~C 304 (452)
T 3zyi_A 300 NPWNC 304 (452)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 87654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.8e-26 Score=261.13 Aligned_cols=231 Identities=20% Similarity=0.187 Sum_probs=174.0
Q ss_pred cccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEecc
Q 002055 590 KLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVG 669 (974)
Q Consensus 590 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 669 (974)
++++|+|++|.+++..|..|.++++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45556666666665556666666667777777776666666666666777777777777665555556666777777777
Q ss_pred CCcccccCchhHHhhhhhhhhhhccCCccccccC-ccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccc
Q 002055 670 ENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLP-TKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIK 748 (974)
Q Consensus 670 ~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~ 748 (974)
+|++.+..+..+. .+++|+.|++++|...+.+| ..+.++++|+.|++++|++++ +|. +..+
T Consensus 156 ~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l--------------- 217 (452)
T 3zyi_A 156 NNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPL--------------- 217 (452)
T ss_dssp SCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTTC---------------
T ss_pred CCCcceeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cccc---------------
Confidence 7766544443444 56667777776644434444 358889999999999999884 342 2222
Q ss_pred cccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccc
Q 002055 749 YSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGA 828 (974)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 828 (974)
+.|+.|||++|++++..|..+.++++|+.|+|++|++++..|..|..
T Consensus 218 ---------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 218 ---------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp ---------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ---------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 23478999999999999999999999999999999999999999999
Q ss_pred cCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCC
Q 002055 829 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 829 l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP 871 (974)
+++|+.|||++|++++..+..+..+++|++|++++|++.+...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999998888888999999999999999987764
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.9e-26 Score=248.95 Aligned_cols=228 Identities=21% Similarity=0.173 Sum_probs=159.3
Q ss_pred ccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCc
Q 002055 593 FLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENE 672 (974)
Q Consensus 593 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 672 (974)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3444444444 233322 3456666666666665555566666666666666666666666666666666667766665
Q ss_pred -ccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcccccc
Q 002055 673 -FFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSI 751 (974)
Q Consensus 673 -l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~ 751 (974)
+.+..|..+. .+++|++|++++|.+++..|..+.++++|++|++++|++++..+..++.+++|
T Consensus 92 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------- 155 (285)
T 1ozn_A 92 QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------- 155 (285)
T ss_dssp TCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred CccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc---------------
Confidence 4433355554 46667777777777766667777778888888888888875555545544443
Q ss_pred CCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCC
Q 002055 752 PLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRS 831 (974)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 831 (974)
+.|+|++|++++..+..+.++++|+.|+|++|++++..|..++.+++
T Consensus 156 ---------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ---------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 67788888888666666888888888888888888888888888888
Q ss_pred CCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCC
Q 002055 832 LESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 832 L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
|+.||+++|++++..|..+..+++|++|++++|++.+.++.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 88888888888876667788888888888888888877654
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=9.1e-26 Score=259.58 Aligned_cols=232 Identities=22% Similarity=0.189 Sum_probs=176.1
Q ss_pred CcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEec
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDV 668 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 668 (974)
++++.|+|++|++++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555666666666555666666777777777777776666666666777777777777776555556667777777777
Q ss_pred cCCcccccCchhHHhhhhhhhhhhccCCccccccC-ccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcc
Q 002055 669 GENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLP-TKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAI 747 (974)
Q Consensus 669 s~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~ 747 (974)
++|++.+..+..+. .+++|+.|++++|+..+.++ ..+.++++|+.|++++|+++ .+|. +..+
T Consensus 144 ~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l-------------- 206 (440)
T 3zyj_A 144 RNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPL-------------- 206 (440)
T ss_dssp CSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTC--------------
T ss_pred CCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCC--------------
Confidence 77776554444444 56677777777644444444 46888999999999999987 4552 2222
Q ss_pred ccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccc
Q 002055 748 KYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIG 827 (974)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 827 (974)
+.|+.|||++|++++..|..+.++++|+.|+|++|++++..|..|.
T Consensus 207 ----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 207 ----------------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp ----------------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred ----------------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 2347899999999998899999999999999999999999999999
Q ss_pred ccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCC
Q 002055 828 AMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 828 ~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP 871 (974)
++++|+.|||++|++++..+..+..+++|++|++++|++.+...
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999998888888999999999999999987653
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2e-26 Score=248.75 Aligned_cols=235 Identities=20% Similarity=0.256 Sum_probs=173.7
Q ss_pred CcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCc-ccccCCcccccCCCCCeEe
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNR-LSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ 667 (974)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355666666666665555666777777777777777776667777777777777777776 6555566677777777777
Q ss_pred ccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcc
Q 002055 668 VGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAI 747 (974)
Q Consensus 668 Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~ 747 (974)
+++|++.+..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----------- 179 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence 777777666666555 56777777777777776666678888899999999998885444445554444
Q ss_pred ccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccc
Q 002055 748 KYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIG 827 (974)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 827 (974)
+.|++++|++++..|..++++++|+.|+|++|++++..|..++
T Consensus 180 -------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 180 -------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp -------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred -------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 6889999999988898899999999999999999987777789
Q ss_pred ccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCC
Q 002055 828 AMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 873 (974)
Q Consensus 828 ~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~ 873 (974)
.+++|+.|++++|.+....+.. .-...++.+..+.|.+.+..|..
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 9999999999999998755432 11234556668888999998863
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=254.49 Aligned_cols=236 Identities=23% Similarity=0.229 Sum_probs=204.0
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|..+. +++++|+|++|.++.. .+..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|+++.++...|.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 4555444 6899999999999985 567899999999999999999988889999999999999999999999988999
Q ss_pred CCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCC-CCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCC
Q 002055 193 GLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSN-CQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSH 271 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 271 (974)
.+++|++|++++|.+..++.. .+..+++|++|++++ +.+..+++..|.++++|++|++++|+++. +| .+..+++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~ 208 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIK 208 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSS
T ss_pred ccccCceeeCCCCcccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcc
Confidence 999999999999999877543 346789999999998 45677777788999999999999999885 23 4778889
Q ss_pred CcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccC
Q 002055 272 LLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSG 351 (974)
Q Consensus 272 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (974)
|++|+|++|++++..|..+..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|+.|++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 99999999999988888899999999999999999888888888999999999999999977777788899999999999
Q ss_pred CCCCC
Q 002055 352 AKLNQ 356 (974)
Q Consensus 352 n~l~~ 356 (974)
|++..
T Consensus 289 Np~~C 293 (440)
T 3zyj_A 289 NPWNC 293 (440)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 98653
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.1e-27 Score=257.49 Aligned_cols=247 Identities=19% Similarity=0.252 Sum_probs=202.8
Q ss_pred cCCcccccccccccccccCCcccccCCCCCeeeCCCccc-cccCCcccc-------CCCCccEEEccCCcccccCCccc-
Q 002055 587 AGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKF-IGNLPTSFG-------SLSSLVSLHLRKNRLSGTMPISL- 657 (974)
Q Consensus 587 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l- 657 (974)
..++|+.|++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. .+++|++|++++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 356788899999888 677766654 88899999998 456777665 68999999999999999899876
Q ss_pred -ccCCCCCeEeccCCcccccCchhHHhhh-----hhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCC--Chh
Q 002055 658 -KNCTSLMTLDVGENEFFGNIPSWFGEMF-----SIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTL--PNC 729 (974)
Q Consensus 658 -~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i--p~~ 729 (974)
..+++|++|++++|++++. |..+. .+ ++|++|++++|++++..|..++++++|+.|++++|++.|.+ |..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8899999999999999887 87777 34 89999999999999998899999999999999999988763 322
Q ss_pred h--cccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEecccccee--cCCcc-ccc
Q 002055 730 I--HNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSG--TLPIG-LTN 804 (974)
Q Consensus 730 ~--~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g--~ip~~-l~~ 804 (974)
+ +.+ +.|+.|+|++|++++ .+|.. +.+
T Consensus 195 ~~~~~l------------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 195 LCPLKF------------------------------------------------PTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp SCTTSC------------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred HHhccC------------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhc
Confidence 2 333 344899999999983 34433 467
Q ss_pred ccCCCEEEccCceeeeecc-ccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCCcccCcccccc
Q 002055 805 LKALQSLNLSYNIFTGRIP-ETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC 883 (974)
Q Consensus 805 l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 883 (974)
+++|+.|+|++|++++.+| ..+..+++|+.|||++|+++ .+|..+. ++|++||+++|++++. |....+..+....
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~ 302 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLS 302 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEE
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEe
Confidence 8999999999999999886 56777999999999999999 8999887 8999999999999987 7655555566666
Q ss_pred cCCCCCCC
Q 002055 884 FLGNNLCG 891 (974)
Q Consensus 884 ~~~n~lcg 891 (974)
+.+|.+.+
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 67775554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-26 Score=254.07 Aligned_cols=225 Identities=21% Similarity=0.185 Sum_probs=157.5
Q ss_pred hhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCC
Q 002055 585 INAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLM 664 (974)
Q Consensus 585 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 664 (974)
+..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|++++|++++..+.. +++|+
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~ 123 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKK 123 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCE
T ss_pred hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCC
Confidence 3455666666666666665443 666777777777777766322 2367777777777776554432 45677
Q ss_pred eEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCcccc-CCCCCcEEEccCCcCCCCCChhhcccccccccCCCc
Q 002055 665 TLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLC-DLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFT 743 (974)
Q Consensus 665 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~ 743 (974)
+|++++|++.+..|..+. .+++|++|++++|++++..|..+. .+++|+.|++++|++++. |...
T Consensus 124 ~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~------------- 188 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV------------- 188 (317)
T ss_dssp EEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC-------------
T ss_pred EEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccc-------------
Confidence 777777777665555555 467777777777777776666653 677888888888877632 2110
Q ss_pred cCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecc
Q 002055 744 GNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIP 823 (974)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 823 (974)
.++.|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|
T Consensus 189 ------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~ 230 (317)
T 3o53_A 189 ------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIE 230 (317)
T ss_dssp ------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred ------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chh
Confidence 12334788888888885 5555888888888888888888 577
Q ss_pred ccccccCCCCEEECCCCccc-ccCCccccCCCCCCeeecc-cCeeeecCCC
Q 002055 824 ETIGAMRSLESIDFSVNKFT-GEIPQSMSSLTFLNHLNLS-NNYLTGKIPS 872 (974)
Q Consensus 824 ~~l~~l~~L~~LdLs~N~l~-g~iP~~l~~l~~L~~L~ls-~N~l~g~iP~ 872 (974)
..++.+++|+.||+++|.++ +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 78888888888888888888 7788888888888888888 4566776654
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.4e-25 Score=260.12 Aligned_cols=285 Identities=24% Similarity=0.234 Sum_probs=165.2
Q ss_pred CCCCCCCCCCccccceeeC------CCCCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCC
Q 002055 60 LASWIGNRDCCAWAGIFCD------NVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFND 133 (974)
Q Consensus 60 ~~~W~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~ 133 (974)
.+.|..+.+||.|+|..|. -....++.|+++++ .+. .+|..+. ++|++|+|++|.
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n----------------~L~-~lp~~l~--~~L~~L~L~~N~ 72 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES----------------GLT-TLPDCLP--AHITTLVIPDNN 72 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS----------------CCS-CCCSCCC--TTCSEEEECSCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC----------------CcC-ccChhhC--CCCcEEEecCCC
Confidence 4567667889999774321 01224677777763 333 5565554 677777777777
Q ss_pred CCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchh
Q 002055 134 FQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDW 213 (974)
Q Consensus 134 i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 213 (974)
++. +|. .+++|++|+|++|++++ +|. .+++|++|++++|.++.++. .+++|++|++++|+++.++.
T Consensus 73 l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~- 138 (622)
T 3g06_A 73 LTS--LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV- 138 (622)
T ss_dssp CSC--CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC-
T ss_pred CCC--CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC-
Confidence 774 454 45777777777777663 443 56777777777777666544 44566666666666655543
Q ss_pred HHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCC
Q 002055 214 LLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSL 293 (974)
Q Consensus 214 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 293 (974)
.+++|++|++++|++++++. .+++|+.|++++|.+++ +| ..+++|++|++++|.+++ +|.. .
T Consensus 139 -----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~-l~~~---~ 200 (622)
T 3g06_A 139 -----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLAS-LPTL---P 200 (622)
T ss_dssp -----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred -----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence 13555555555555555432 23445555555555543 12 234455555555555543 2221 2
Q ss_pred CCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCC
Q 002055 294 TSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGL 373 (974)
Q Consensus 294 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L 373 (974)
++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..+++ |
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~-----------------------------L 243 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE-----------------------------L 243 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT-----------------------------C
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc-----------------------------C
Confidence 445555555554442 221 12444444444444442 22 22233 5
Q ss_pred ceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceech
Q 002055 374 ESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSE 437 (974)
Q Consensus 374 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~ 437 (974)
+.|++++|.+.. +|. .+++|+.|++++|.++ .+|..+.++++|+.|+|++|.+++.++.
T Consensus 244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 555555555542 333 4578888888888888 4477788888899999999988876655
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8e-26 Score=262.31 Aligned_cols=221 Identities=21% Similarity=0.170 Sum_probs=163.9
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| ++.+++|++|+|++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 4477788888888877777778888888888888888876655 777888888888888877433 237788888
Q ss_pred ccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhc-ccccccccCCCccCc
Q 002055 668 VGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIH-NLTAMATVNPFTGNA 746 (974)
Q Consensus 668 Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~l~~l~~l~~~~~~~ 746 (974)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+. .++.|
T Consensus 106 L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L---------- 171 (487)
T 3oja_A 106 AANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------- 171 (487)
T ss_dssp CCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----------
T ss_pred CcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc----------
Confidence 888888766554 356788888888888887777888888888888888888877666553 33333
Q ss_pred cccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccc
Q 002055 747 IKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETI 826 (974)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 826 (974)
+.|||++|.+++. |. ...+++|+.|+|++|++++.+| .+
T Consensus 172 --------------------------------------~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~ 210 (487)
T 3oja_A 172 --------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EF 210 (487)
T ss_dssp --------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GG
T ss_pred --------------------------------------cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hH
Confidence 6778888888765 22 3457888888888888886444 47
Q ss_pred cccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeee-ecCC
Q 002055 827 GAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT-GKIP 871 (974)
Q Consensus 827 ~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~-g~iP 871 (974)
+.+++|+.|||++|.+++ +|..+..+++|++|++++|++. |.+|
T Consensus 211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 788888888888888885 6777778888888888888877 4444
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=245.78 Aligned_cols=243 Identities=20% Similarity=0.148 Sum_probs=201.6
Q ss_pred CcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEE
Q 002055 563 LIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSL 642 (974)
Q Consensus 563 L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 642 (974)
++..+++.+.+.. .....+..+++|++|++++|.+++..|..+.++++|++|++++|++++..| +..+++|++|
T Consensus 12 l~i~~ls~~~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLKQ----ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHHH----HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchhh----hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 4445556655533 223344456789999999999998888899999999999999999987665 8899999999
Q ss_pred EccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcC
Q 002055 643 HLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNL 722 (974)
Q Consensus 643 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 722 (974)
++++|++++.. ..++|++|++++|++.+..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 99999998533 448999999999999876654 367899999999999998888999999999999999999
Q ss_pred CCCCChhhc-ccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcc
Q 002055 723 SGTLPNCIH-NLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIG 801 (974)
Q Consensus 723 ~g~ip~~~~-~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~ 801 (974)
++..|..+. .++ .|+.|+|++|++++. |.
T Consensus 157 ~~~~~~~~~~~l~------------------------------------------------~L~~L~L~~N~l~~~-~~- 186 (317)
T 3o53_A 157 DTVNFAELAASSD------------------------------------------------TLEHLNLQYNFIYDV-KG- 186 (317)
T ss_dssp CEEEGGGGGGGTT------------------------------------------------TCCEEECTTSCCCEE-EC-
T ss_pred CcccHHHHhhccC------------------------------------------------cCCEEECCCCcCccc-cc-
Confidence 976665442 333 347899999999865 43
Q ss_pred cccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeee-ecCCC
Q 002055 802 LTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT-GKIPS 872 (974)
Q Consensus 802 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~-g~iP~ 872 (974)
...+++|+.|+|++|++++ +|..+..+++|+.|||++|+++ .+|..+..+++|++|++++|+++ +.+|.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 4469999999999999996 4556999999999999999999 58999999999999999999998 55553
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=260.26 Aligned_cols=236 Identities=22% Similarity=0.176 Sum_probs=199.1
Q ss_pred CCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCc
Q 002055 560 SSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSL 639 (974)
Q Consensus 560 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 639 (974)
+++|+.|++++|.+++..| ..+..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred CCCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence 3467777777777776544 345678899999999999988766 8899999999999999885432 3899
Q ss_pred cEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCcccc-CCCCCcEEEcc
Q 002055 640 VSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLC-DLAFLQILDLA 718 (974)
Q Consensus 640 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls 718 (974)
++|++++|++++..+. .+++|+.|++++|.+++..|..++ .+++|+.|++++|.+++.+|..+. .+++|+.|+|+
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 9999999999977654 457899999999999988888877 689999999999999999998887 79999999999
Q ss_pred CCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecC
Q 002055 719 DNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTL 798 (974)
Q Consensus 719 ~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~i 798 (974)
+|.+++..+. .. ++.|+.|||++|++++ +
T Consensus 178 ~N~l~~~~~~--~~------------------------------------------------l~~L~~L~Ls~N~l~~-~ 206 (487)
T 3oja_A 178 YNFIYDVKGQ--VV------------------------------------------------FAKLKTLDLSSNKLAF-M 206 (487)
T ss_dssp TSCCCEEECC--CC------------------------------------------------CTTCCEEECCSSCCCE-E
T ss_pred CCcccccccc--cc------------------------------------------------CCCCCEEECCCCCCCC-C
Confidence 9999854221 11 2344899999999997 5
Q ss_pred CcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCccc-ccCCccccCCCCCCeeecc
Q 002055 799 PIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFT-GEIPQSMSSLTFLNHLNLS 862 (974)
Q Consensus 799 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~-g~iP~~l~~l~~L~~L~ls 862 (974)
|+.++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5559999999999999999995 7888999999999999999999 8899999999999999987
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.4e-26 Score=277.90 Aligned_cols=388 Identities=14% Similarity=0.097 Sum_probs=216.9
Q ss_pred CCCCCCEEeccCccCCCCcccccC-CCCCCCEEEccCC-cccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccc
Q 002055 393 LFKNLDSLDLSNNSIVGLVPQSFG-RLSSLRVLQLYRN-KLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQL 470 (974)
Q Consensus 393 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 470 (974)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.........++++|++|++++|.++......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~------- 175 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW------- 175 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG-------
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH-------
Confidence 345555555555555544443343 4556666666555 2322111112334555555555555443211110
Q ss_pred eeEeccCCCCCCCCCccccCCCCCCEEeCCCCC--CcCCcChhHHhhcCcCceEEecccccccccc-ccccccccceeec
Q 002055 471 IELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSG--ISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSFLRL 547 (974)
Q Consensus 471 ~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~--~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l 547 (974)
++.....+++|++|++++|. +.......+...+++|+.|++++|...+.++ .+..+++|+.|++
T Consensus 176 -------------l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 176 -------------LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp -------------GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred -------------HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 11112234556666666554 2111112223345666666666662222233 3444555555554
Q ss_pred cCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCccccc-ccccccccccCCcccccCCCCCeeeCCCcccc
Q 002055 548 MANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFL-FLDRNILQGNLPDCWMSYQNLMMLDLSNNKFI 626 (974)
Q Consensus 548 ~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 626 (974)
..+.. ++..+.+.+ +...+.++++|+.| .+.+... +.++..+..+++|++|++++|.++
T Consensus 243 ~~~~~--------------~~~~~~~~~-----l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 243 GGYTA--------------EVRPDVYSG-----LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp SBCCC--------------CCCHHHHHH-----HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred ccccC--------------ccchhhHHH-----HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 43211 112222222 22345667777777 3433222 345555567788888888888865
Q ss_pred ccC-CccccCCCCccEEEccCCcccc-cCCcccccCCCCCeEecc---------CCcccccCchhHHhhhhhhhhhhccC
Q 002055 627 GNL-PTSFGSLSSLVSLHLRKNRLSG-TMPISLKNCTSLMTLDVG---------ENEFFGNIPSWFGEMFSIMVFLILRS 695 (974)
Q Consensus 627 ~~~-p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls---------~N~l~~~~p~~~~~~~~~L~~L~L~~ 695 (974)
+.. +..+..+++|++|++++| +.. .++.....+++|+.|+++ .+.+++.....+...+++|+.|.++.
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 432 223557788888888888 432 223333457888888883 34554443344444567888888888
Q ss_pred CccccccCcccc-CCCCCcEEEcc--C----CcCCCCCCh--hhcccccccccCCCccCccccccCCCccccccccceee
Q 002055 696 NYFHGLLPTKLC-DLAFLQILDLA--D----NNLSGTLPN--CIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQA 766 (974)
Q Consensus 696 N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~g~ip~--~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (974)
|.+++..+..+. .+++|+.|+++ + |++++ .|. .+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~----------------------------------- 425 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFG----------------------------------- 425 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHH-----------------------------------
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-CchhhHHH-----------------------------------
Confidence 888776665554 47888888888 3 33331 110 100
Q ss_pred EEEEecccchhhhccceeeEEEeccccceecCCccccc-ccCCCEEEccCceeeeeccccc-cccCCCCEEECCCCcccc
Q 002055 767 LVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTN-LKALQSLNLSYNIFTGRIPETI-GAMRSLESIDFSVNKFTG 844 (974)
Q Consensus 767 ~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~LdLs~N~l~g 844 (974)
.....++.|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++
T Consensus 426 ---------~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 426 ---------AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp ---------HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred ---------HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 0112334557788876 676666666655 7888888888888877666555 667888888888888866
Q ss_pred cCCc-cccCCCCCCeeecccCeee
Q 002055 845 EIPQ-SMSSLTFLNHLNLSNNYLT 867 (974)
Q Consensus 845 ~iP~-~l~~l~~L~~L~ls~N~l~ 867 (974)
..+. ....+++|++|++++|+++
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCC
Confidence 5544 3345788888888888774
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.1e-24 Score=231.80 Aligned_cols=211 Identities=23% Similarity=0.192 Sum_probs=164.0
Q ss_pred CCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhh
Q 002055 613 QNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLI 692 (974)
Q Consensus 613 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~ 692 (974)
++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++.+..|..+. .+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence 3577777777777666666677777777777777777766666677777777777777777666655555 567777777
Q ss_pred ccCCccccccCccccCCCCCcEEEccCCcCCC-CCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEe
Q 002055 693 LRSNYFHGLLPTKLCDLAFLQILDLADNNLSG-TLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMK 771 (974)
Q Consensus 693 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (974)
+++|.+++..+..+..+++|++|++++|++++ .+|..++++++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------------------------- 151 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------------------------- 151 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence 77777777666678888999999999999886 367777666555
Q ss_pred cccchhhhccceeeEEEeccccceecCCcccccccCCC----EEEccCceeeeeccccccccCCCCEEECCCCcccccCC
Q 002055 772 GVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQ----SLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 772 ~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP 847 (974)
+.||+++|++++..+..+..+++|+ .|++++|++++..|..+. ..+|+.|||++|++++..+
T Consensus 152 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 152 -------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp -------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT
T ss_pred -------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH
Confidence 6889999999987777888777777 899999999976665554 4589999999999997777
Q ss_pred ccccCCCCCCeeecccCeeeecCCCC
Q 002055 848 QSMSSLTFLNHLNLSNNYLTGKIPSS 873 (974)
Q Consensus 848 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 873 (974)
..+.++++|++|++++|++.|.+|.-
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred hHhcccccccEEEccCCcccccCCch
Confidence 77899999999999999999998854
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.4e-23 Score=221.36 Aligned_cols=218 Identities=22% Similarity=0.274 Sum_probs=144.0
Q ss_pred CCCccccceeeCCCCCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCC
Q 002055 67 RDCCAWAGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSM 146 (974)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l 146 (974)
.++|.|.|+.|.- .+.++.+++++. .+. .+|..+. +++++|+|++|.++.. .+..+..+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~----------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l 60 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK----------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRL 60 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS----------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC----------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCC
Confidence 5899999999963 234566777762 222 3454443 4677777777777764 34466777
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEE
Q 002055 147 GNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVEL 226 (974)
Q Consensus 147 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 226 (974)
++|++|++++|.++...+..|.++++|++|++++|.++.++...|..+++| ++|
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------~~L 114 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL--------------------------AEL 114 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC--------------------------CEE
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC--------------------------CEE
Confidence 777777777777765555556677777777777777666665555555554 455
Q ss_pred EcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCC
Q 002055 227 DLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHF 306 (974)
Q Consensus 227 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 306 (974)
++++|+++++++..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 55555555555555666666777777777666533 44456677777777777777765555677777777777777777
Q ss_pred CCCchhhhhcCCCCCEEECcCCCCCC
Q 002055 307 NSSIPNLLCRLTHLEHLSLSHNSLEG 332 (974)
Q Consensus 307 ~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (974)
++..+..+..+++|++|++++|.+..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCHHHhccccCCCEEEecCCCeeC
Confidence 76555567777788888888877654
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.3e-22 Score=239.81 Aligned_cols=264 Identities=24% Similarity=0.287 Sum_probs=177.6
Q ss_pred CCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeec
Q 002055 122 KHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLD 201 (974)
Q Consensus 122 ~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 201 (974)
..+++|++++|.++. +|..+. ++|++|++++|.++. +|. .+++|++|++++|+++.++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 468999999999985 677665 899999999999884 554 57899999999998887665 567777777
Q ss_pred CccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcc
Q 002055 202 FSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNN 281 (974)
Q Consensus 202 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 281 (974)
+++|.++.++. .+++|+.|++++|+++.++.. +++|++|++++|++++. |. .+++|+.|++++|.
T Consensus 108 Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l--~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 108 IFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL--PA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp ECSCCCCCCCC------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSC
T ss_pred CcCCcCCCCCC------CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc--CC---ccCCCCEEECCCCC
Confidence 77777776654 356666666666666665432 35566666666665541 21 23455555555555
Q ss_pred cccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhh
Q 002055 282 FHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEI 361 (974)
Q Consensus 282 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 361 (974)
+++ +| ..+++|++|++++|.+++ +|. .+++|+.|++++|.++. +|. .++
T Consensus 173 l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~------------------- 221 (622)
T 3g06_A 173 LTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS------------------- 221 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT-------------------
T ss_pred CCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC-------------------
Confidence 553 33 233455555555555542 222 12444444444444441 221 112
Q ss_pred hhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceechhhhc
Q 002055 362 LDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSEIHFV 441 (974)
Q Consensus 362 ~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~ 441 (974)
+|+.|++++|.+.+ +| ..+++|+.|++++|.++.. |. .+++|+.|++++|+++ .+|. .+.
T Consensus 222 ----------~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~-~l~ 281 (622)
T 3g06_A 222 ----------GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPE-SLI 281 (622)
T ss_dssp ----------TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCG-GGG
T ss_pred ----------CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCH-HHh
Confidence 26666666666654 34 4568999999999999965 44 6789999999999998 6776 689
Q ss_pred CCCCCcEEEcCCccccccccCC
Q 002055 442 NLTKLSVFLVGENTLTLKVRRD 463 (974)
Q Consensus 442 ~l~~L~~L~l~~n~l~~~~~~~ 463 (974)
++++|+.|++++|++....+..
T Consensus 282 ~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp GSCTTCEEECCSCCCCHHHHHH
T ss_pred hccccCEEEecCCCCCCcCHHH
Confidence 9999999999999988665443
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=4.8e-26 Score=273.34 Aligned_cols=386 Identities=16% Similarity=0.080 Sum_probs=191.0
Q ss_pred CCCCCCEEEcCCCCCCCCchhhhh-cCCCCCEEECcCC-CCCCC-chHhhhcCCCCcEEEccCCCCCCcchhhhhhhccc
Q 002055 292 SLTSLKHLDLSFNHFNSSIPNLLC-RLTHLEHLSLSHN-SLEGR-IPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGC 368 (974)
Q Consensus 292 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 368 (974)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..+..+......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345666666666655544444443 4566666666665 33321 23333456666666666665554433322222223
Q ss_pred CCCCCceeeCCCCC--Ccc-cccccccCCCCCCEEeccCc-cCCCCcccccCCCCCCCEEEccCC-------cccceech
Q 002055 369 VPNGLESLVLPNSS--IFG-HLTDQIGLFKNLDSLDLSNN-SIVGLVPQSFGRLSSLRVLQLYRN-------KLHGTLSE 437 (974)
Q Consensus 369 ~~~~L~~L~L~~n~--~~~-~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-------~l~~~i~~ 437 (974)
++. |++|++++|. +.. .++..+..+++|++|++++| .+.+ ++..+..+++|+.|+++.+ .+.+ ++.
T Consensus 183 ~~~-L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 183 YTS-LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp CCC-CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred CCc-CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 333 5555555554 111 11111234566666666665 3333 4555555666666664433 2222 222
Q ss_pred hhhcCCCCCcEEE-cCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEEeCCCCCCcCCcChhHHhhc
Q 002055 438 IHFVNLTKLSVFL-VGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 516 (974)
Q Consensus 438 ~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~~~~~~p~~~~~~l 516 (974)
.+.++++|+.+. +.+.. ...++..+..+++|++|++++|.+.+.....+...+
T Consensus 260 -~l~~~~~L~~Ls~~~~~~-------------------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 260 -ALSGCKELRCLSGFWDAV-------------------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp -HHHTCTTCCEEECCBTCC-------------------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred -HHhcCCCcccccCCcccc-------------------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 345666666552 21110 012333344566777777777776554444455566
Q ss_pred CcCceEEecccccc-cccccc-ccccccceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCccccc
Q 002055 517 SQLYLLDLGHNQIH-GELTNL-TKASQLSFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFL 594 (974)
Q Consensus 517 ~~L~~L~Ls~n~l~-~~~~~l-~~~~~L~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L 594 (974)
++|+.|++++| +. ..++.+ ..+++|+.|++.++.-.| ....+.+++.. +......+++|+.|
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~~---l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQG---LVSVSMGCPKLESV 377 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHHH---HHHHHHHCTTCCEE
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHHH---HHHHHHhchhHHHH
Confidence 77777777776 32 122222 235556666654321100 00112222111 11111235566666
Q ss_pred ccccccccccCCcccc-cCCCCCeeeCC--C----ccccc-----cCCccccCCCCccEEEccCCcccccCCccccc-CC
Q 002055 595 FLDRNILQGNLPDCWM-SYQNLMMLDLS--N----NKFIG-----NLPTSFGSLSSLVSLHLRKNRLSGTMPISLKN-CT 661 (974)
Q Consensus 595 ~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~-----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~ 661 (974)
.+..|.+++..+..+. .+++|+.|+++ + |.+++ .++..+..+++|++|++++ .+++..+..+.. ++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 6655555554433333 35666666666 2 33331 1112244566666676655 454444444443 66
Q ss_pred CCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCc-cccCCCCCcEEEccCCcCC
Q 002055 662 SLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPT-KLCDLAFLQILDLADNNLS 723 (974)
Q Consensus 662 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 723 (974)
+|+.|+|++|.+++..+..+...+++|+.|++++|++++.... ....+++|+.|++++|+++
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6777777776665554444433466677777777766544333 2334667777777777664
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.1e-24 Score=227.94 Aligned_cols=223 Identities=20% Similarity=0.165 Sum_probs=182.5
Q ss_pred CcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEec
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDV 668 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 668 (974)
..+..+++..+.+.... ....+++|+.|++++|.+.. ++ .++.+++|++|++++|++++. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34556667776665543 35677888888998888763 33 477888899999999988863 47888889999999
Q ss_pred cCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccc
Q 002055 669 GENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIK 748 (974)
Q Consensus 669 s~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~ 748 (974)
++|.+.+..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 93 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------ 159 (272)
T 3rfs_A 93 TGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------ 159 (272)
T ss_dssp TTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence 99988776666565 67888889999999888877788999999999999999986666555555554
Q ss_pred cccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccc
Q 002055 749 YSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGA 828 (974)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 828 (974)
+.|++++|++++..|..++++++|+.|+|++|++++..|..++.
T Consensus 160 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (272)
T 3rfs_A 160 ------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203 (272)
T ss_dssp ------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC
Confidence 78999999999877777899999999999999999988888999
Q ss_pred cCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCCC
Q 002055 829 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 873 (974)
Q Consensus 829 l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~ 873 (974)
+++|+.|++++|.+.+..| .|++++++.|+++|.||..
T Consensus 204 l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred CcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 9999999999999987654 6889999999999999974
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.5e-25 Score=250.28 Aligned_cols=243 Identities=15% Similarity=0.212 Sum_probs=187.6
Q ss_pred hHHhhhcCCcccccccccccccccC----CcccccCCCCCeeeCCCc---cccccCCccc-------cCCCCccEEEccC
Q 002055 581 LCYTINAGMKLQFLFLDRNILQGNL----PDCWMSYQNLMMLDLSNN---KFIGNLPTSF-------GSLSSLVSLHLRK 646 (974)
Q Consensus 581 ~~~~l~~~~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~ 646 (974)
+...+..+++|++|++++|.+++.. +..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3345666778888888888877653 344667888888888885 4455566554 6788899999999
Q ss_pred Ccccc----cCCcccccCCCCCeEeccCCcccccCchhHHhhh------------hhhhhhhccCCccc-cccC---ccc
Q 002055 647 NRLSG----TMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMF------------SIMVFLILRSNYFH-GLLP---TKL 706 (974)
Q Consensus 647 n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~------------~~L~~L~L~~N~l~-~~~p---~~l 706 (974)
|++++ .+|..+..+++|++|+|++|.+.+..+..+...+ ++|+.|++++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 98887 4777888888999999999988655554444322 68888888888887 4455 467
Q ss_pred cCCCCCcEEEccCCcCCC-----CCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhcc
Q 002055 707 CDLAFLQILDLADNNLSG-----TLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEIL 781 (974)
Q Consensus 707 ~~l~~L~~L~Ls~N~l~g-----~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 781 (974)
..+++|+.|++++|+++. .+|..+..+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~------------------------------------------------ 215 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC------------------------------------------------ 215 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC------------------------------------------------
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC------------------------------------------------
Confidence 778889999999998872 122233333
Q ss_pred ceeeEEEeccccce----ecCCcccccccCCCEEEccCceeeee----ccccc--cccCCCCEEECCCCcccc----cCC
Q 002055 782 NLVRIIDVSKNFFS----GTLPIGLTNLKALQSLNLSYNIFTGR----IPETI--GAMRSLESIDFSVNKFTG----EIP 847 (974)
Q Consensus 782 ~~l~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l--~~l~~L~~LdLs~N~l~g----~iP 847 (974)
+.|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 34478999999997 67898999999999999999999977 67777 449999999999999998 589
Q ss_pred ccc-cCCCCCCeeecccCeeeecCC
Q 002055 848 QSM-SSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 848 ~~l-~~l~~L~~L~ls~N~l~g~iP 871 (974)
..+ .++++|++|++++|++++..|
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhcCCCceEEEccCCcCCcchh
Confidence 888 668999999999999998765
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.2e-23 Score=222.52 Aligned_cols=212 Identities=23% Similarity=0.196 Sum_probs=155.7
Q ss_pred cccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEecc
Q 002055 590 KLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVG 669 (974)
Q Consensus 590 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 669 (974)
++++|++++|.+++..+..+.++++|++|++++|++.+..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35555555555555555566667777777777777766666666677777777777777776666667777777777777
Q ss_pred CCcccccCchhHHhhhhhhhhhhccCCcccc-ccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccc
Q 002055 670 ENEFFGNIPSWFGEMFSIMVFLILRSNYFHG-LLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIK 748 (974)
Q Consensus 670 ~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~ 748 (974)
+|++.+..+..+. .+++|++|++++|.+++ .+|..+.++++|+.|++++|++++..+..+..+..++.+.
T Consensus 109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~-------- 179 (276)
T 2z62_A 109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-------- 179 (276)
T ss_dssp TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC--------
T ss_pred CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc--------
Confidence 7777655544454 56777777777777766 3578888899999999999999977777777666653321
Q ss_pred cccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccc
Q 002055 749 YSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGA 828 (974)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 828 (974)
..||+++|++++..|.. ....+|+.|+|++|++++..+..++.
T Consensus 180 ------------------------------------l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 180 ------------------------------------LSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp ------------------------------------EEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred ------------------------------------eeeecCCCcccccCccc-cCCCcccEEECCCCceeecCHhHhcc
Confidence 27899999999655544 44558999999999999777777899
Q ss_pred cCCCCEEECCCCcccccCC
Q 002055 829 MRSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 829 l~~L~~LdLs~N~l~g~iP 847 (974)
+++|+.|+|++|.+++..|
T Consensus 223 l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCEEECCSSCBCCCTT
T ss_pred cccccEEEccCCcccccCC
Confidence 9999999999999997654
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.6e-22 Score=216.16 Aligned_cols=206 Identities=21% Similarity=0.197 Sum_probs=141.3
Q ss_pred ccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccC
Q 002055 591 LQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGE 670 (974)
Q Consensus 591 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 670 (974)
.+.++++++.++ .+|..+. +++++|++++|++.+..+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555555 2343322 3455555555555444444455555555555555555433333344445555555544
Q ss_pred CcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccc
Q 002055 671 NEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYS 750 (974)
Q Consensus 671 N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~ 750 (974)
|++++..+..+..+++|+.|++++|++++..|..+..+++|
T Consensus 95 -------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 135 (270)
T 2o6q_A 95 -------------------------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------- 135 (270)
T ss_dssp -------------------------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred -------------------------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------
Confidence 44444444556777888888888888886666555555444
Q ss_pred cCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccC
Q 002055 751 IPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMR 830 (974)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 830 (974)
+.|+|++|++++..+..++.+++|+.|+|++|++++..|..+..++
T Consensus 136 ----------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 136 ----------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence 6788899988865555688999999999999999987777899999
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCC
Q 002055 831 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 831 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
+|+.|||++|++++..+..+..+++|++|++++|++.+..+.
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999999999977777789999999999999999887763
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.7e-23 Score=221.21 Aligned_cols=208 Identities=20% Similarity=0.198 Sum_probs=170.8
Q ss_pred cCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeE
Q 002055 587 AGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTL 666 (974)
Q Consensus 587 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 666 (974)
.+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..++.+++|++|++++|++++..+..+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45677778888877763 2 3477788888888888888752 367788888888888888887777778888888888
Q ss_pred eccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCc
Q 002055 667 DVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNA 746 (974)
Q Consensus 667 ~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~ 746 (974)
++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 115 ~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------- 183 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL---------- 183 (272)
T ss_dssp ECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------
T ss_pred ECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC----------
Confidence 8888888776666565 67888888888888887777778899999999999999997666656655554
Q ss_pred cccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccc
Q 002055 747 IKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETI 826 (974)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 826 (974)
+.|++++|++++..|..++++++|+.|+|++|.++|..
T Consensus 184 --------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---- 221 (272)
T 3rfs_A 184 --------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---- 221 (272)
T ss_dssp --------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT----
T ss_pred --------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC----
Confidence 78999999999888878899999999999999998654
Q ss_pred cccCCCCEEECCCCcccccCCccccCCC
Q 002055 827 GAMRSLESIDFSVNKFTGEIPQSMSSLT 854 (974)
Q Consensus 827 ~~l~~L~~LdLs~N~l~g~iP~~l~~l~ 854 (974)
++|+.|+++.|.++|.+|.+++.+.
T Consensus 222 ---~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 222 ---PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ---TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ---cHHHHHHHHHHhCCCcccCcccccC
Confidence 4689999999999999999987664
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.2e-22 Score=216.77 Aligned_cols=206 Identities=19% Similarity=0.191 Sum_probs=145.9
Q ss_pred cccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhh
Q 002055 609 WMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIM 688 (974)
Q Consensus 609 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L 688 (974)
+.++++++++++++|.++ .+|..+. +++++|++++|++++..|..|.++++|+.|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 344555566666665555 3444332 4566666666666655555566666666666666665443222 145666
Q ss_pred hhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEE
Q 002055 689 VFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALV 768 (974)
Q Consensus 689 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (974)
++|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 66666666665 456677788888888888888886666666655554
Q ss_pred EEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCc
Q 002055 769 VMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQ 848 (974)
Q Consensus 769 ~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~ 848 (974)
+.|+|++|++++..|..+..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+++ .+|.
T Consensus 127 ----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 127 ----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp ----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred ----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 67888888888666666788899999999999999666666788999999999999998 7888
Q ss_pred cccCCCCCCeeecccCeeeecC
Q 002055 849 SMSSLTFLNHLNLSNNYLTGKI 870 (974)
Q Consensus 849 ~l~~l~~L~~L~ls~N~l~g~i 870 (974)
.+..+..|+++++++|++.+..
T Consensus 190 ~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTCCCSEEECCSCCBCCSG
T ss_pred hhcccccCCeEEeCCCCccCcC
Confidence 8888889999999999987654
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.7e-24 Score=235.88 Aligned_cols=256 Identities=19% Similarity=0.172 Sum_probs=144.1
Q ss_pred EECcCCccccccchhhHHhhhcCCcccccccccccccccCC----cccccCC-CCCeeeCCCccccccCCccccCC----
Q 002055 566 LDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLP----DCWMSYQ-NLMMLDLSNNKFIGNLPTSFGSL---- 636 (974)
Q Consensus 566 L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l---- 636 (974)
++++.|.+++.+|.+ +...++|++|++++|.+++..+ ..+.+++ +|++|+|++|++.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF----TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHH----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHH----HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 344455555444322 2223335555555555554444 4455555 56666666666655545444443
Q ss_pred -CCccEEEccCCcccccCCccc----ccC-CCCCeEeccCCcccccCchhHHhh----hhhhhhhhccCCccccc----c
Q 002055 637 -SSLVSLHLRKNRLSGTMPISL----KNC-TSLMTLDVGENEFFGNIPSWFGEM----FSIMVFLILRSNYFHGL----L 702 (974)
Q Consensus 637 -~~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~----~~~L~~L~L~~N~l~~~----~ 702 (974)
++|++|++++|++++..+..+ ..+ ++|++|++++|++.+..+..+... .++|++|++++|.+++. +
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 566666666666655444432 223 566666666666655544444322 24566666666666532 2
Q ss_pred CccccCCC-CCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhcc
Q 002055 703 PTKLCDLA-FLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEIL 781 (974)
Q Consensus 703 p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 781 (974)
+..+..++ +|+.|++++|++++..+..+...- ...
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------------------~~~ 194 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------------------ASI 194 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------------HTS
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------------HhC
Confidence 33344444 777777777777765554443210 001
Q ss_pred -ceeeEEEeccccceec----CCccccc-ccCCCEEEccCceeeeecc----ccccccCCCCEEECCCCccccc------
Q 002055 782 -NLVRIIDVSKNFFSGT----LPIGLTN-LKALQSLNLSYNIFTGRIP----ETIGAMRSLESIDFSVNKFTGE------ 845 (974)
Q Consensus 782 -~~l~~LdLs~N~l~g~----ip~~l~~-l~~L~~L~Ls~N~l~g~ip----~~l~~l~~L~~LdLs~N~l~g~------ 845 (974)
+.|+.|||++|++++. +|..+.. .++|+.|||++|++++..+ ..+..+++|+.|+|++|.+.+.
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 2346777777777753 4445544 3478888888888776544 3345667788888888874432
Q ss_pred -CCccccCCCCCCeeecccCeeeec
Q 002055 846 -IPQSMSSLTFLNHLNLSNNYLTGK 869 (974)
Q Consensus 846 -iP~~l~~l~~L~~L~ls~N~l~g~ 869 (974)
++..+.++++|+.||+++|++.+.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHhccCCceEEEecCCCcCCCc
Confidence 344566777788888888877665
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.3e-23 Score=224.04 Aligned_cols=235 Identities=19% Similarity=0.191 Sum_probs=167.0
Q ss_pred CCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCccc--ccCCCCCeeeCCCccccccCC----ccccC
Q 002055 562 NLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCW--MSYQNLMMLDLSNNKFIGNLP----TSFGS 635 (974)
Q Consensus 562 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 635 (974)
.++.+.+.++.++......+.. ...+++|++|++++|.+++..|..+ ..+++|++|++++|++.+..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3556666666654322111111 1234679999999999999888887 889999999999999987655 34456
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEE
Q 002055 636 LSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQIL 715 (974)
Q Consensus 636 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 715 (974)
+++|++|++++|++++..|..++.+++|++|++++|++.+.... ..+..+..+++|++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNL 202 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEE
Confidence 88999999999999888888888999999999999987542100 001123466778888
Q ss_pred EccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccce
Q 002055 716 DLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFS 795 (974)
Q Consensus 716 ~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~ 795 (974)
++++|+++ .+|.....+ ...++.|+.||||+|+++
T Consensus 203 ~Ls~N~l~-~l~~~~~~l--------------------------------------------~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 203 ALRNTGME-TPTGVCAAL--------------------------------------------AAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp BCCSSCCC-CHHHHHHHH--------------------------------------------HHHTCCCSSEECTTSCCC
T ss_pred ECCCCCCC-chHHHHHHH--------------------------------------------HhcCCCCCEEECCCCCCC
Confidence 88888775 333211000 011223367888888888
Q ss_pred ecCCcccccc---cCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeee
Q 002055 796 GTLPIGLTNL---KALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 868 (974)
Q Consensus 796 g~ip~~l~~l---~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g 868 (974)
+.+|..++.+ ++|+.|+|++|+|+ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7778777776 58889999999988 7787775 7899999999999863 43 5677888999999998764
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.7e-23 Score=234.00 Aligned_cols=248 Identities=21% Similarity=0.165 Sum_probs=170.6
Q ss_pred CCCcEEECcCCccccccchhhHHhhhcCC-cccccccccccccccCCcccccC-----CCCCeeeCCCccccccCCcccc
Q 002055 561 SNLIGLDLSGNSFSGSIFHFLCYTINAGM-KLQFLFLDRNILQGNLPDCWMSY-----QNLMMLDLSNNKFIGNLPTSFG 634 (974)
Q Consensus 561 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~ 634 (974)
.+|++|++++|.+++..+..++..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 44667777777776666555666667777 78888888888877666666664 7888888888888766665433
Q ss_pred C----C-CCccEEEccCCcccccCCcccc----c-CCCCCeEeccCCcccccCchhH----HhhhhhhhhhhccCCcccc
Q 002055 635 S----L-SSLVSLHLRKNRLSGTMPISLK----N-CTSLMTLDVGENEFFGNIPSWF----GEMFSIMVFLILRSNYFHG 700 (974)
Q Consensus 635 ~----l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~Ls~N~l~~~~p~~~----~~~~~~L~~L~L~~N~l~~ 700 (974)
. + ++|++|++++|++++..+..+. . .++|++|+|++|++.+..+..+ ....++|+.|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3 3 7888888888888766554443 3 3688888888888875444333 3112378888888888877
Q ss_pred ccCcccc----CC-CCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccc
Q 002055 701 LLPTKLC----DL-AFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAA 775 (974)
Q Consensus 701 ~~p~~l~----~l-~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (974)
..+..+. .+ ++|+.|||++|++++.-...+...
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~------------------------------------------ 219 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI------------------------------------------ 219 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------------------------
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH------------------------------------------
Confidence 6664443 44 589999999999875322211100
Q ss_pred hhhhccceeeEEEeccccceecCCc----ccccccCCCEEEccCceeee-------eccccccccCCCCEEECCCCcccc
Q 002055 776 DYSEILNLVRIIDVSKNFFSGTLPI----GLTNLKALQSLNLSYNIFTG-------RIPETIGAMRSLESIDFSVNKFTG 844 (974)
Q Consensus 776 ~~~~~l~~l~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g-------~ip~~l~~l~~L~~LdLs~N~l~g 844 (974)
+....+.|+.|||++|++++..+. .+..+++|+.|+|++|.+++ .++..+..+++|+.||+++|++.+
T Consensus 220 -l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 220 -FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp -HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred -HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 001122458899999999875553 34677899999999998443 344577888999999999999988
Q ss_pred cCCcccc
Q 002055 845 EIPQSMS 851 (974)
Q Consensus 845 ~iP~~l~ 851 (974)
..|..+.
T Consensus 299 ~~~~~~~ 305 (362)
T 3goz_A 299 SHSIPIS 305 (362)
T ss_dssp GGCHHHH
T ss_pred cchHHHH
Confidence 7665554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.4e-23 Score=225.33 Aligned_cols=220 Identities=19% Similarity=0.195 Sum_probs=164.0
Q ss_pred CCeeeCCCcccccc----CCccccCCCCccEEEccCCcccccCCccc--ccCCCCCeEeccCCcccccCc----hhHHhh
Q 002055 615 LMMLDLSNNKFIGN----LPTSFGSLSSLVSLHLRKNRLSGTMPISL--KNCTSLMTLDVGENEFFGNIP----SWFGEM 684 (974)
Q Consensus 615 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~~ 684 (974)
++.+.+.++.+... ++. +..+++|++|++++|++++..|..+ ..+++|++|++++|++.+..| ..+. .
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred eeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 45555555554321 111 1234568888888888888777777 778888888888888877655 2222 4
Q ss_pred hhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCC--CC--hhhcccccccccCCCccCccccccCCCcccccc
Q 002055 685 FSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGT--LP--NCIHNLTAMATVNPFTGNAIKYSIPLNSTYALG 760 (974)
Q Consensus 685 ~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~--ip--~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 760 (974)
+++|++|++++|++++..|..+..+++|++||+++|++.+. +| .+++.++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-------------------------- 197 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-------------------------- 197 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC--------------------------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC--------------------------
Confidence 77888888999998888888999999999999999998753 22 1223333
Q ss_pred ccceeeEEEEecccchhhhccceeeEEEeccccceecCCc----ccccccCCCEEEccCceeeeecccccccc---CCCC
Q 002055 761 SVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPI----GLTNLKALQSLNLSYNIFTGRIPETIGAM---RSLE 833 (974)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~ 833 (974)
.|++|+|++|+++ .+|. .++++++|++|||++|++++.+|+.++.+ ++|+
T Consensus 198 ----------------------~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~ 254 (310)
T 4glp_A 198 ----------------------AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN 254 (310)
T ss_dssp ----------------------CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred ----------------------CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence 3478899999997 3333 25788999999999999999989888887 6999
Q ss_pred EEECCCCcccccCCccccCCCCCCeeecccCeeee-cCCCCcccCcccccccCCCCCC
Q 002055 834 SIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG-KIPSSTQLQSFNASCFLGNNLC 890 (974)
Q Consensus 834 ~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g-~iP~~~~~~~~~~~~~~~n~lc 890 (974)
+|||++|+++ .+|..+. ++|++||+++|+++| ++| ..+..+....+.+|.+.
T Consensus 255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQP--DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCT--TSCCCCSCEECSSTTTS
T ss_pred EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchh--hhCCCccEEECcCCCCC
Confidence 9999999999 7898885 899999999999998 443 34455555556666443
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.7e-23 Score=236.29 Aligned_cols=238 Identities=21% Similarity=0.291 Sum_probs=185.1
Q ss_pred CCCcEEECcCCccccccchhhHHhhhcCCcccccccccc---cccccCCccc-------ccCCCCCeeeCCCccccc---
Q 002055 561 SNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRN---ILQGNLPDCW-------MSYQNLMMLDLSNNKFIG--- 627 (974)
Q Consensus 561 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~~--- 627 (974)
++|+.|++++|.+.+..+..++..+..+++|++|+|++| .+++.+|..+ ..+++|++|+|++|.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456667777777766655556666777888888888885 4555566554 678889999999999887
Q ss_pred -cCCccccCCCCccEEEccCCcccccCCcc----cccC---------CCCCeEeccCCccc-ccCc---hhHHhhhhhhh
Q 002055 628 -NLPTSFGSLSSLVSLHLRKNRLSGTMPIS----LKNC---------TSLMTLDVGENEFF-GNIP---SWFGEMFSIMV 689 (974)
Q Consensus 628 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~~~~~L~ 689 (974)
.+|..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|++. +.+| ..+. .+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcC
Confidence 46777888899999999999987544433 3344 89999999999987 4455 3344 577899
Q ss_pred hhhccCCccc--c---ccCccccCCCCCcEEEccCCcCC----CCCChhhcccccccccCCCccCccccccCCCcccccc
Q 002055 690 FLILRSNYFH--G---LLPTKLCDLAFLQILDLADNNLS----GTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALG 760 (974)
Q Consensus 690 ~L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 760 (974)
.|++++|.++ | .+|..+..+++|+.|+|++|+++ +.+|..+..++.|
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------ 246 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------ 246 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence 9999999887 3 45558889999999999999986 5566665555444
Q ss_pred ccceeeEEEEecccchhhhccceeeEEEeccccceec----CCccc--ccccCCCEEEccCceeee----eccccc-ccc
Q 002055 761 SVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGT----LPIGL--TNLKALQSLNLSYNIFTG----RIPETI-GAM 829 (974)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~----ip~~l--~~l~~L~~L~Ls~N~l~g----~ip~~l-~~l 829 (974)
+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++
T Consensus 247 ------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 247 ------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp ------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred ------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 7899999999876 67777 449999999999999998 589888 678
Q ss_pred CCCCEEECCCCcccccCC
Q 002055 830 RSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 830 ~~L~~LdLs~N~l~g~iP 847 (974)
++|+.|+|++|++++..|
T Consensus 303 ~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 303 PDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTSBSCTTSH
T ss_pred CCceEEEccCCcCCcchh
Confidence 999999999999998875
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.9e-23 Score=228.07 Aligned_cols=249 Identities=19% Similarity=0.204 Sum_probs=197.4
Q ss_pred CCcEEECcCCccccccchhhHHhhhcC--CcccccccccccccccCCcccccCCCCCeeeCCCcccccc-CCccccCCCC
Q 002055 562 NLIGLDLSGNSFSGSIFHFLCYTINAG--MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGN-LPTSFGSLSS 638 (974)
Q Consensus 562 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~ 638 (974)
.++.++++++.+.. ..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..+++
T Consensus 48 ~~~~l~l~~~~~~~-------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCCH-------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCCH-------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 46778888887763 123334 7899999999999987666 55789999999999998866 7888899999
Q ss_pred ccEEEccCCcccccCCcccccCCCCCeEeccCC-ccccc-CchhHHhhhhhhhhhhccCC-ccccc-cCccccCCC-CCc
Q 002055 639 LVSLHLRKNRLSGTMPISLKNCTSLMTLDVGEN-EFFGN-IPSWFGEMFSIMVFLILRSN-YFHGL-LPTKLCDLA-FLQ 713 (974)
Q Consensus 639 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~ 713 (974)
|++|++++|++++..|..++.+++|++|++++| .+++. +|..+. .+++|+.|++++| .+++. ++..+..++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999999999888889999999999999999 67653 566565 6889999999999 88865 677788899 999
Q ss_pred EEEccCC--cCC-CCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEec
Q 002055 714 ILDLADN--NLS-GTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVS 790 (974)
Q Consensus 714 ~L~Ls~N--~l~-g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs 790 (974)
.|++++| .++ +.+|..+..+++ |+.|+++
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~------------------------------------------------L~~L~l~ 230 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPN------------------------------------------------LVHLDLS 230 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTT------------------------------------------------CSEEECT
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCC------------------------------------------------CCEEeCC
Confidence 9999999 455 445554444443 3788999
Q ss_pred ccc-ceecCCcccccccCCCEEEccCce-eeeeccccccccCCCCEEECCCCcccccCCc-cccCC-CCCCeeecccCee
Q 002055 791 KNF-FSGTLPIGLTNLKALQSLNLSYNI-FTGRIPETIGAMRSLESIDFSVNKFTGEIPQ-SMSSL-TFLNHLNLSNNYL 866 (974)
Q Consensus 791 ~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l-~~L~~L~ls~N~l 866 (974)
+|. +++..+..++++++|+.|++++|. ++......++++++|+.|++++| +|. .+..+ ..++.|++++|++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccC
Confidence 999 788888889999999999999995 33322236888999999999998 333 34444 3488888999999
Q ss_pred eecCCC
Q 002055 867 TGKIPS 872 (974)
Q Consensus 867 ~g~iP~ 872 (974)
+|.+|.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 998885
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6e-22 Score=209.14 Aligned_cols=213 Identities=18% Similarity=0.196 Sum_probs=151.9
Q ss_pred CCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhh
Q 002055 613 QNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLI 692 (974)
Q Consensus 613 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~ 692 (974)
.+.++++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|++.+..|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 76 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-------------- 76 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH--------------
Confidence 35677888888877 5666554 578888888888887777778888888888887777755433
Q ss_pred ccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEec
Q 002055 693 LRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKG 772 (974)
Q Consensus 693 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (974)
..+.++++|+.|++++|++++..|..+..++.|
T Consensus 77 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------------------ 109 (251)
T 3m19_A 77 -----------GVFDDLTELGTLGLANNQLASLPLGVFDHLTQL------------------------------------ 109 (251)
T ss_dssp -----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------------------------------
T ss_pred -----------hHhccCCcCCEEECCCCcccccChhHhcccCCC------------------------------------
Confidence 345566777778888887775555555444443
Q ss_pred ccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccC
Q 002055 773 VAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSS 852 (974)
Q Consensus 773 ~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~ 852 (974)
+.|+|++|++++..|..++++++|+.|+|++|++++..|..++.+++|+.|||++|++++..|..+..
T Consensus 110 ------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 110 ------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 67788888888655556788899999999999999777778999999999999999999888888999
Q ss_pred CCCCCeeecccCeeeecCCCCcccCc------ccccccCCCCCCCCCCCCCCCCC
Q 002055 853 LTFLNHLNLSNNYLTGKIPSSTQLQS------FNASCFLGNNLCGAPLPKNCTDE 901 (974)
Q Consensus 853 l~~L~~L~ls~N~l~g~iP~~~~~~~------~~~~~~~~n~lcg~~~~~~c~~~ 901 (974)
+++|++|++++|+++|..+.-..+.. .......|+.+++.|....|...
T Consensus 178 l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 99999999999999987543222211 11122345677777766677654
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.1e-20 Score=203.49 Aligned_cols=204 Identities=24% Similarity=0.252 Sum_probs=126.8
Q ss_pred cCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCC
Q 002055 117 SLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSF 196 (974)
Q Consensus 117 ~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 196 (974)
.+.+++++++++++++.++. +|..+. +++++|+|++|.+.+..|..|.++++|++|++++|.++.++.. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 35678889999999998885 566553 6889999999998887788888889999999988888766543 56666
Q ss_pred CCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEE
Q 002055 197 LEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLN 276 (974)
Q Consensus 197 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 276 (974)
|++|++++|++..++. .+..+++|++|++++|+++++++..|..+++|++|++++|+++
T Consensus 79 L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~------------------ 137 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK------------------ 137 (290)
T ss_dssp CCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC------------------
T ss_pred CCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC------------------
Confidence 6666666666665543 2234455555555555555555555555555555555555544
Q ss_pred ccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCC
Q 002055 277 LGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLN 355 (974)
Q Consensus 277 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 355 (974)
+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+.+|+.|++++|++.
T Consensus 138 -------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 -------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 333334445555555555555555433334445555555555555555 34444555555555555555544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=9.9e-22 Score=205.88 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCeeeCCCccccccCCccccCCCCccEEEccCCc-ccccCCcccccCCCCCeEeccC-CcccccCchhHHhhhhhhhhh
Q 002055 614 NLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNR-LSGTMPISLKNCTSLMTLDVGE-NEFFGNIPSWFGEMFSIMVFL 691 (974)
Q Consensus 614 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~L~~L 691 (974)
+|++|++++|++++..+..|+.+++|++|++++|+ +++..+..|.++++|++|++++ |++.+..+..+. .+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence 56666666666665555556666666666666665 5544444566666666666665 555433333222 23333333
Q ss_pred hccCCccccccCccccCCCCCc---EEEccCC-cCC
Q 002055 692 ILRSNYFHGLLPTKLCDLAFLQ---ILDLADN-NLS 723 (974)
Q Consensus 692 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~ 723 (974)
++++|++++ +|. +..+++|+ .|++++| +++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence 444333333 232 33444444 4555554 444
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.2e-20 Score=197.16 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=138.4
Q ss_pred CCCccccceeeCCCCCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCC
Q 002055 67 RDCCAWAGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSM 146 (974)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l 146 (974)
.+||.|.|.+|.. ..+.+++++. -...+|..+. +++++|+|++|.+++. .+..+..+
T Consensus 2 ~~Cp~~~gC~C~~---~~~~l~~~~~-----------------~l~~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l 58 (251)
T 3m19_A 2 KTCETVTGCTCNE---GKKEVDCQGK-----------------SLDSVPSGIP--ADTEKLDLQSTGLATL-SDATFRGL 58 (251)
T ss_dssp --CHHHHSSEEEG---GGTEEECTTC-----------------CCSSCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred ccCCCCCceEcCC---CCeEEecCCC-----------------CccccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCc
Confidence 3688999999953 2345677762 2334555544 5788888888888875 56677888
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEE
Q 002055 147 GNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVEL 226 (974)
Q Consensus 147 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 226 (974)
++|++|+|++|.+.+..|..|.++++|++|++++|.++.++...|..+++ |++|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--------------------------L~~L 112 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ--------------------------LDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------------CCEE
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCC--------------------------CCEE
Confidence 88888888888888777777788888888888888777766665555554 4555
Q ss_pred EcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCC
Q 002055 227 DLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHF 306 (974)
Q Consensus 227 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 306 (974)
++++|+++++++..+..+++|++|++++|++++.. +..+..+++|++|+|++|++++..+..+..+++|++|++++|.+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 55555555555556677777777777777777543 45677778888888888888876667788888899999999888
Q ss_pred CCC
Q 002055 307 NSS 309 (974)
Q Consensus 307 ~~~ 309 (974)
...
T Consensus 192 ~c~ 194 (251)
T 3m19_A 192 DCS 194 (251)
T ss_dssp CTT
T ss_pred eCC
Confidence 765
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.3e-21 Score=209.85 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=158.2
Q ss_pred cccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCC
Q 002055 592 QFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGEN 671 (974)
Q Consensus 592 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 671 (974)
..+.+..+.+++.++ ...+++|++|++++|.+.. +| .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 22 ~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 22 IKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 334455555544332 4456777888888887763 44 46777888888888888775433 777888888888888
Q ss_pred cccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcccccc
Q 002055 672 EFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSI 751 (974)
Q Consensus 672 ~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~ 751 (974)
++.+ +| .+. .+++|+.|++++|++++. | .+..+++|+.|++++|++++..+ +..++.
T Consensus 96 ~l~~-~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~---------------- 152 (308)
T 1h6u_A 96 PLKN-VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN---------------- 152 (308)
T ss_dssp CCSC-CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT----------------
T ss_pred cCCC-ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC----------------
Confidence 8754 33 344 577788888888888764 3 38889999999999999885433 433333
Q ss_pred CCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCC
Q 002055 752 PLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRS 831 (974)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 831 (974)
|+.|++++|++++ +|. ++++++|+.|+|++|++++..| +..+++
T Consensus 153 --------------------------------L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 196 (308)
T 1h6u_A 153 --------------------------------LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPN 196 (308)
T ss_dssp --------------------------------CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred --------------------------------ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCC
Confidence 3789999999986 444 8899999999999999996544 889999
Q ss_pred CCEEECCCCcccccCCccccCCCCCCeeecccCeeee
Q 002055 832 LESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 868 (974)
Q Consensus 832 L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g 868 (974)
|+.|+|++|++++..| +..+++|++|++++|++++
T Consensus 197 L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999999997654 8899999999999999987
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.5e-21 Score=208.07 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=134.8
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
+++|++|++++|.++. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4566777777776664 33 46677777777777777764433 67777777777777777643 2577777777777
Q ss_pred ccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcc
Q 002055 668 VGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAI 747 (974)
Q Consensus 668 Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~ 747 (974)
+++|++.+ +|. +. .+++|+.|++++|++++..+ +..+++|+.|++++|++++ +|. +..++.
T Consensus 114 l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~------------ 174 (308)
T 1h6u_A 114 LTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSK------------ 174 (308)
T ss_dssp CTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTT------------
T ss_pred CCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCC------------
Confidence 77777755 333 43 56777777777777776543 7778888888888888874 332 333333
Q ss_pred ccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccc
Q 002055 748 KYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIG 827 (974)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 827 (974)
|+.|++++|++++..| +..+++|+.|+|++|++++..| +.
T Consensus 175 ------------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~ 214 (308)
T 1h6u_A 175 ------------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214 (308)
T ss_dssp ------------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred ------------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence 3678888888875433 7788888888888888886553 78
Q ss_pred ccCCCCEEECCCCcccc
Q 002055 828 AMRSLESIDFSVNKFTG 844 (974)
Q Consensus 828 ~l~~L~~LdLs~N~l~g 844 (974)
.+++|+.|++++|++++
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 88888888888888875
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.6e-22 Score=220.26 Aligned_cols=271 Identities=22% Similarity=0.148 Sum_probs=166.2
Q ss_pred CCCccccceeeCCCCCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCC--CCCCEEECCCCCCCCCCCCcccC
Q 002055 67 RDCCAWAGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDL--KHLSYLDLSFNDFQGVPIPRFIG 144 (974)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l--~~L~~L~Ls~n~i~~~~~p~~l~ 144 (974)
.-|.+|.++.|+ ...++.+++++. .+. +..+..+ +++++|++++|.+.+. .+. +.
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~~----------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~ 90 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTGK----------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HF 90 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTTC----------------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CC
T ss_pred HHHHHHHHHhcC--chhheeeccccc----------------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hc
Confidence 456689999886 345788999873 222 3445555 7899999999998874 443 56
Q ss_pred CCCCCCEEeCCCCCCCCC-CccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccc-cCCCcchhHHhhcCCCC
Q 002055 145 SMGNLKYLNLSGSRFVGM-IPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYV-NLSKASDWLLVTHMLPS 222 (974)
Q Consensus 145 ~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~ 222 (974)
.+++|++|++++|.+.+. +|..+.++++|++|++++|.++...+..+..+++|++|++++| .+++. .....+..+++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTT
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCC
Confidence 789999999999988765 7778889999999999999887666667777788888888777 44431 12223334555
Q ss_pred CcEEEcCCC-CCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCC-CCcEEEccCc--ccc-cCCCcccCCCCCCC
Q 002055 223 LVELDLSNC-QLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLS-HLLFLNLGYN--NFH-GPIPEGLQSLTSLK 297 (974)
Q Consensus 223 L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~ 297 (974)
|++|++++| .+++ ..++..+..++ +|++|++++| .++ +.++..+..+++|+
T Consensus 170 L~~L~l~~~~~l~~------------------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 170 LDELNLSWCFDFTE------------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp CCEEECCCCTTCCH------------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCEEcCCCCCCcCh------------------------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 555555555 4443 22234444555 5555555555 232 22344445556666
Q ss_pred EEEcCCCC-CCCCchhhhhcCCCCCEEECcCCC-CCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCce
Q 002055 298 HLDLSFNH-FNSSIPNLLCRLTHLEHLSLSHNS-LEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLES 375 (974)
Q Consensus 298 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~ 375 (974)
+|++++|. +++..+..+..+++|++|++++|. +.......++++++|++|++++| +.... +..+...++.
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~-------~~~l~~~l~~ 297 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-------LQLLKEALPH 297 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-------HHHHHHHSTT
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH-------HHHHHhhCcc
Confidence 66666665 444455555666666666666663 22222224556666666666666 32211 1111112555
Q ss_pred eeCCCCCCcccccccccC
Q 002055 376 LVLPNSSIFGHLTDQIGL 393 (974)
Q Consensus 376 L~L~~n~~~~~~p~~l~~ 393 (974)
|++++|.+++..|..++.
T Consensus 298 L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 298 LQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SEESCCCSCCTTCSSCSS
T ss_pred eEEecccCccccCCcccc
Confidence 666777777766665553
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=8.3e-21 Score=198.83 Aligned_cols=196 Identities=17% Similarity=0.151 Sum_probs=139.9
Q ss_pred cccccccccccccccCCcccccCCCCCeeeCCCcc-ccccCCccccCCCCccEEEccC-CcccccCCcccccCCCCCeEe
Q 002055 590 KLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNK-FIGNLPTSFGSLSSLVSLHLRK-NRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 590 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 667 (974)
++++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666777777766666677788888888888886 7665566788888888888887 888876677788888888888
Q ss_pred ccCCcccccCchhHHhhhhhhh---hhhccCC-ccccccCccccCCCCCc-EEEccCCcCCCCCChhhcccccccccCCC
Q 002055 668 VGENEFFGNIPSWFGEMFSIMV---FLILRSN-YFHGLLPTKLCDLAFLQ-ILDLADNNLSGTLPNCIHNLTAMATVNPF 742 (974)
Q Consensus 668 Ls~N~l~~~~p~~~~~~~~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~ 742 (974)
+++|++++ +|. +. .+++|+ +|++++| .+++..+..+.++++|+ .|++++|+++ .+|......
T Consensus 112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~--------- 178 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG--------- 178 (239)
T ss_dssp EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT---------
T ss_pred CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC---------
Confidence 88888865 665 44 567777 8888888 88777777788999999 9999999887 555422111
Q ss_pred ccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEecccc-ceecCCcccccc-cCCCEEEccCceeee
Q 002055 743 TGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNF-FSGTLPIGLTNL-KALQSLNLSYNIFTG 820 (974)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~-l~g~ip~~l~~l-~~L~~L~Ls~N~l~g 820 (974)
+.|+.|+|++|+ +++..|..+.++ ++|+.|++++|+++
T Consensus 179 ---------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~- 218 (239)
T 2xwt_C 179 ---------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218 (239)
T ss_dssp ---------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-
T ss_pred ---------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-
Confidence 133677777774 765445556666 67777777777776
Q ss_pred eccccccccCCCCEEECCCC
Q 002055 821 RIPETIGAMRSLESIDFSVN 840 (974)
Q Consensus 821 ~ip~~l~~l~~L~~LdLs~N 840 (974)
.+|.. .+++|+.|+++++
T Consensus 219 ~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC
T ss_pred cCChh--HhccCceeeccCc
Confidence 34443 4566666666655
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.8e-20 Score=218.53 Aligned_cols=188 Identities=29% Similarity=0.406 Sum_probs=109.0
Q ss_pred cccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEecc
Q 002055 590 KLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVG 669 (974)
Q Consensus 590 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 669 (974)
+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666665 55444 256666777776666 455 335666666666666665 555 443 66666666
Q ss_pred CCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcccc
Q 002055 670 ENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKY 749 (974)
Q Consensus 670 ~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~ 749 (974)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +. ++
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------- 181 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------- 181 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence 666655 454 24556666666666654 443 34566666666666654 444 22 11
Q ss_pred ccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCC-------CEEEccCceeeeec
Q 002055 750 SIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKAL-------QSLNLSYNIFTGRI 822 (974)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~g~i 822 (974)
|+.|||++|+|+ .+|. +.. +| +.|+|++|+|+ .|
T Consensus 182 ----------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 182 ----------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp ----------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CC
T ss_pred ----------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ec
Confidence 145666666665 4555 443 44 66666666666 45
Q ss_pred cccccccCCCCEEECCCCcccccCCccccCCC
Q 002055 823 PETIGAMRSLESIDFSVNKFTGEIPQSMSSLT 854 (974)
Q Consensus 823 p~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~ 854 (974)
|..+..+++|+.|||++|++++.+|..+..++
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66666666666666666666666666655543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.3e-19 Score=182.31 Aligned_cols=163 Identities=25% Similarity=0.311 Sum_probs=116.6
Q ss_pred CCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCee
Q 002055 121 LKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHL 200 (974)
Q Consensus 121 l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 200 (974)
.++|++|++++|.+++. .+..++.+++|++|++++|++.+..+..|.++++|++|++++|.++.++...|..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 35899999999999875 55567899999999999999987777778899999999999999988887777777777777
Q ss_pred cCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCc
Q 002055 201 DFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYN 280 (974)
Q Consensus 201 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 280 (974)
++++|+++.++.. .+..+++|++|++++|+++++++..+..+++|++|++++|.+.+ .+++|++|+++.|
T Consensus 106 ~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n 175 (208)
T 2o6s_A 106 ALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWIN 175 (208)
T ss_dssp ECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHH
T ss_pred EcCCCcCcccCHh--HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHH
Confidence 7777777665432 22455666666666666666666556666666666666665443 2345555666666
Q ss_pred ccccCCCcccCCCC
Q 002055 281 NFHGPIPEGLQSLT 294 (974)
Q Consensus 281 ~l~~~~p~~l~~l~ 294 (974)
+++|.+|..++.++
T Consensus 176 ~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 176 KHSGVVRNSAGSVA 189 (208)
T ss_dssp HCTTTBBCTTSSBC
T ss_pred hCCceeeccCcccc
Confidence 66665555555443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.6e-19 Score=208.84 Aligned_cols=209 Identities=21% Similarity=0.275 Sum_probs=140.3
Q ss_pred CCCCCCCCCc-----cccce-eeCCCCCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCC
Q 002055 61 ASWIGNRDCC-----AWAGI-FCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDF 134 (974)
Q Consensus 61 ~~W~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i 134 (974)
.+|..+.++| .|.|+ .|. .++++.|+++++ .+.+ +|..+. ++|++|+|++|.|
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n----------------~L~~-lp~~l~--~~L~~L~Ls~N~l 92 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL----------------NLSS-LPDNLP--PQITVLEITQNAL 92 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSS----------------CCSC-CCSCCC--TTCSEEECCSSCC
T ss_pred HHHhccCCccccccchhhhccccc--cCCccEEEeCCC----------------CCCc-cCHhHc--CCCCEEECcCCCC
Confidence 3565555667 79999 785 357888999883 4444 666653 7889999999888
Q ss_pred CCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhH
Q 002055 135 QGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWL 214 (974)
Q Consensus 135 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 214 (974)
+. +| ..+++|++|++++|.+++ +|. +.+ +|++|++++|.++.++. .+++|++|++++|.++.++
T Consensus 93 ~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp--- 156 (571)
T 3cvr_A 93 IS--LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLP--- 156 (571)
T ss_dssp SC--CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---
T ss_pred cc--cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCC---
Confidence 85 56 457888888888888886 565 655 78888888887776443 3455555555555554433
Q ss_pred HhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCC
Q 002055 215 LVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLT 294 (974)
Q Consensus 215 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 294 (974)
. .+++|++|++++|++++ +|. +. ++|++|+|++|+++ .+|. +..
T Consensus 157 -----------------------~----~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-- 200 (571)
T 3cvr_A 157 -----------------------E----LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-- 200 (571)
T ss_dssp -----------------------C----CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred -----------------------C----cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence 2 34455555555555554 233 32 56666666666666 4444 433
Q ss_pred CC-------CEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCC
Q 002055 295 SL-------KHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCN 343 (974)
Q Consensus 295 ~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 343 (974)
+| ++|+|++|.++ .+|..+..+++|++|++++|.+++.+|..+..+..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 55 88888888887 56777777888888888888888888887776543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3.7e-19 Score=197.54 Aligned_cols=224 Identities=17% Similarity=0.120 Sum_probs=153.7
Q ss_pred CcccccccccccccccCCcccccCCCCCeeeCCCccccccCC-ccccCCCCccE-EEccCCcccccCCcccccCCCCCeE
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLP-TSFGSLSSLVS-LHLRKNRLSGTMPISLKNCTSLMTL 666 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L 666 (974)
+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|+++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 356667777777765545567788888888888888766555 35677777665 5566678887777778888888888
Q ss_pred eccCCcccccCchhHHhhhhhhhhhhccC-CccccccCccccCCC-CCcEEEccCCcCCCCCChhhcccccccccCCCcc
Q 002055 667 DVGENEFFGNIPSWFGEMFSIMVFLILRS-NYFHGLLPTKLCDLA-FLQILDLADNNLSGTLPNCIHNLTAMATVNPFTG 744 (974)
Q Consensus 667 ~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~ 744 (974)
++++|++.+..+..+. ....+..|++.+ |++....+..+..+. .++.|++++|+++ .+|.......
T Consensus 110 ~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~---------- 177 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT---------- 177 (350)
T ss_dssp EEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE----------
T ss_pred cccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc----------
Confidence 8888887655444433 344555666655 455544445566654 5888999999887 4554332222
Q ss_pred CccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCc-ccccccCCCEEEccCceeeeecc
Q 002055 745 NAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPI-GLTNLKALQSLNLSYNIFTGRIP 823 (974)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip 823 (974)
.++.+++++|+..+.||. .++++++|+.|||++|+|+ .+|
T Consensus 178 --------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp 218 (350)
T 4ay9_X 178 --------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP 218 (350)
T ss_dssp --------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCC
T ss_pred --------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccC
Confidence 236788876444446775 4688999999999999998 555
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCee
Q 002055 824 ETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 866 (974)
Q Consensus 824 ~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l 866 (974)
. +.+.+|+.|.+.++.-...+|. +.++++|+.++++++.-
T Consensus 219 ~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 219 S--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH 258 (350)
T ss_dssp S--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred h--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence 4 2356677777777666667884 88889999999987643
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.1e-18 Score=193.85 Aligned_cols=229 Identities=19% Similarity=0.213 Sum_probs=178.4
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCCE-EEcCCCCccccCccc
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIP-HQLGNLSSLQY-LVLSRNFLHLVNFGW 190 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n~i~~~~~~~ 190 (974)
++|..+ .+++++|+|++|+|+.+ -+..|..+++|++|+|++|++.+.+| ..|.++++|++ +.+++|+++.+++..
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCcCc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 455555 35899999999999963 33568999999999999999877655 57899999876 666789999999999
Q ss_pred cCCCCCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCC-CCCCCCCCCCCcCCC-CCCEEeCCCCCCCCCCChhhhcC
Q 002055 191 LSGLSFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSN-CQLHIFPPLPVANFS-TLTTLDLSHNQFDNSFVPSWVFG 268 (974)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~ 268 (974)
|..+++|++|++++|++...+...+ ....++..|++.+ +++..++...|..+. .+++|++++|+++. ++.....
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~ 175 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFN 175 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSST
T ss_pred hhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhcc
Confidence 9999999999999999998865432 3456778888865 678888888887775 68899999999975 3566667
Q ss_pred CCCCcEEEccC-cccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEE
Q 002055 269 LSHLLFLNLGY-NNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRL 347 (974)
Q Consensus 269 l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (974)
..+|++|++.+ |.++...++.|..+++|++|++++|+++.. |. ..+.+|+.|.+.++.--..+| .+..+++|+.+
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l 251 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEA 251 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-CS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-Ch--hhhccchHhhhccCCCcCcCC-CchhCcChhhC
Confidence 78899999986 555543345688999999999999999854 43 235677777776665444666 47888899999
Q ss_pred EccCC
Q 002055 348 YLSGA 352 (974)
Q Consensus 348 ~L~~n 352 (974)
++.++
T Consensus 252 ~l~~~ 256 (350)
T 4ay9_X 252 SLTYP 256 (350)
T ss_dssp ECSCH
T ss_pred cCCCC
Confidence 88754
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.9e-18 Score=175.24 Aligned_cols=163 Identities=23% Similarity=0.253 Sum_probs=117.6
Q ss_pred CCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEE
Q 002055 220 LPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHL 299 (974)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 299 (974)
.++|++|++++|+++++++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 456777777787777777777778888888888888887543 4556778888888888888876666667788888888
Q ss_pred EcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCC
Q 002055 300 DLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLP 379 (974)
Q Consensus 300 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 379 (974)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+. ++.|++.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~------------l~~L~~~ 173 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG------------IRYLSEW 173 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT------------THHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC------------HHHHHHH
Confidence 8888888866666677888888888888888866666677788888888888876543322 5555555
Q ss_pred CCCCcccccccccCCC
Q 002055 380 NSSIFGHLTDQIGLFK 395 (974)
Q Consensus 380 ~n~~~~~~p~~l~~l~ 395 (974)
.|.+.|.+|.+++.++
T Consensus 174 ~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHCTTTBBCTTSSBC
T ss_pred HHhCCceeeccCcccc
Confidence 5555555555554443
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=8.5e-19 Score=180.50 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=121.2
Q ss_pred eEeccCCcccccCchhHHhhhhhhhhhhccCCccccccC-ccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCc
Q 002055 665 TLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLP-TKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFT 743 (974)
Q Consensus 665 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~ 743 (974)
.+++++|.++ .+|..+ .+.++.|++++|++++..| ..+..+++|+.|++++|++++..|..+..++.|
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------- 83 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------- 83 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence 4555555542 244332 2334555666666655544 346778888888888888886666566655544
Q ss_pred cCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecc
Q 002055 744 GNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIP 823 (974)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 823 (974)
+.|||++|++++..|..++++++|++|+|++|+|++..|
T Consensus 84 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 84 -----------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred -----------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 678889999987777778999999999999999999889
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCC
Q 002055 824 ETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 824 ~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
..|+.+++|+.|||++|++++..|..+..+++|++|++++|+++|.++-
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999999999999999999899999999999999999999988763
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=9.9e-21 Score=222.29 Aligned_cols=203 Identities=20% Similarity=0.158 Sum_probs=151.3
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
++.|+.|+|++|.++ .+|..++++++|+.|++++|.....+|..+ ..+...+.+|..++++++|+.|+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHHC
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccCc
Confidence 455666666666665 456666666666666665543221111110 11224556777777888888887
Q ss_pred -ccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCc
Q 002055 668 -VGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNA 746 (974)
Q Consensus 668 -Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~ 746 (974)
++.|. +..|+.+.+.+|.+++..+ ..|+.|++++|++++ +|. ++.++.|
T Consensus 416 ~l~~n~------------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L---------- 465 (567)
T 1dce_A 416 PMRAAY------------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV---------- 465 (567)
T ss_dssp GGGHHH------------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC----------
T ss_pred chhhcc------------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC----------
Confidence 55543 3456667777787775433 248999999999985 675 6665554
Q ss_pred cccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccc
Q 002055 747 IKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETI 826 (974)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 826 (974)
+.|||++|+++ .+|..++++++|+.|+|++|+|++ +| .+
T Consensus 466 --------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l 504 (567)
T 1dce_A 466 --------------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV 504 (567)
T ss_dssp --------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred --------------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-cc
Confidence 78999999999 899999999999999999999996 78 89
Q ss_pred cccCCCCEEECCCCcccccC-CccccCCCCCCeeecccCeeeecCCCC
Q 002055 827 GAMRSLESIDFSVNKFTGEI-PQSMSSLTFLNHLNLSNNYLTGKIPSS 873 (974)
Q Consensus 827 ~~l~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~ls~N~l~g~iP~~ 873 (974)
+.+++|+.|||++|++++.+ |..++.+++|++|++++|+++|.+|..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999999999999999887 999999999999999999999987754
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.3e-17 Score=172.91 Aligned_cols=164 Identities=22% Similarity=0.220 Sum_probs=136.5
Q ss_pred CCCCCCCCccccceeeCCCCCceEEEEcCCCCccccCCCccccCCCccccccccCcCcCCCCCCEEECCCCCCCCCCCCc
Q 002055 62 SWIGNRDCCAWAGIFCDNVTGHIVELNLRNPFTYYVQPDQYEANPRSMLVGKVNPSLLDLKHLSYLDLSFNDFQGVPIPR 141 (974)
Q Consensus 62 ~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~ 141 (974)
.|..+...|.|++|.|.. .-.+.+|..+. ++|++|+|++|.+++. .|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~-----------------------------~~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~ 58 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS-----------------------------KRHASVPAGIP--TNAQILYLHDNQITKL-EPG 58 (229)
T ss_dssp CCCCTTCEEETTEEECTT-----------------------------SCCSSCCSCCC--TTCSEEECCSSCCCCC-CTT
T ss_pred ccCCCCCEEeCCEeEccC-----------------------------CCcCccCCCCC--CCCCEEEcCCCccCcc-CHH
Confidence 455688999999999964 12234454443 7899999999999986 788
Q ss_pred ccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCccccCCCcchhHHhhcCCC
Q 002055 142 FIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVNLSKASDWLLVTHMLP 221 (974)
Q Consensus 142 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~ 221 (974)
.+..+++|++|+|++|++....+..|.++++|++|+|++|.++.++...|..+++|++|++++|+++.++.. +..++
T Consensus 59 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~~~l~ 135 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG---IERLT 135 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT---GGGCT
T ss_pred HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc---cccCC
Confidence 899999999999999999877777889999999999999999999988899999999999999999877543 35678
Q ss_pred CCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCC
Q 002055 222 SLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNS 260 (974)
Q Consensus 222 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 260 (974)
+|++|++++|+++++++..+..+++|++|++++|.+...
T Consensus 136 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888888888888888877788888888888888887654
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.5e-18 Score=205.04 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=92.4
Q ss_pred CCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccE
Q 002055 562 NLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVS 641 (974)
Q Consensus 562 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 641 (974)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..| +..+++|+.
T Consensus 22 ~l~~l~l~~~~i~~~~~------~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHTTCSCTTSEEC------HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHhccCCCcccccc------hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 44455566666555433 2345667777777777664 23 46677777777777777765444 666777777
Q ss_pred EEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCc
Q 002055 642 LHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNN 721 (974)
Q Consensus 642 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 721 (974)
|+|++|++++ +| .+..+++|+.|+|++|++.+ +| .+. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|+
T Consensus 92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence 7777777764 23 56677777777777777654 23 233 456666666666666654 456666666666666666
Q ss_pred CCCCCC
Q 002055 722 LSGTLP 727 (974)
Q Consensus 722 l~g~ip 727 (974)
+++..|
T Consensus 165 l~~~~~ 170 (605)
T 1m9s_A 165 ISDIVP 170 (605)
T ss_dssp CCCCGG
T ss_pred CCCchh
Confidence 665444
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.7e-18 Score=186.57 Aligned_cols=190 Identities=20% Similarity=0.257 Sum_probs=136.4
Q ss_pred cccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEecc
Q 002055 590 KLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVG 669 (974)
Q Consensus 590 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 669 (974)
.+..+.+..+.+++..+ +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 34445566665554332 34677777778877777633 3 36667777777777777775443 6777777777777
Q ss_pred CCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCcccc
Q 002055 670 ENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKY 749 (974)
Q Consensus 670 ~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~ 749 (974)
+|++.+ + +.+..+++|+.|++++|++++ ++ .+..++
T Consensus 99 ~n~l~~-~--------------------------~~l~~l~~L~~L~L~~n~i~~-~~-~l~~l~--------------- 134 (291)
T 1h6t_A 99 ENKVKD-L--------------------------SSLKDLKKLKSLSLEHNGISD-IN-GLVHLP--------------- 134 (291)
T ss_dssp SSCCCC-G--------------------------GGGTTCTTCCEEECTTSCCCC-CG-GGGGCT---------------
T ss_pred CCcCCC-C--------------------------hhhccCCCCCEEECCCCcCCC-Ch-hhcCCC---------------
Confidence 776643 1 125667788888888888874 22 233333
Q ss_pred ccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecccccccc
Q 002055 750 SIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAM 829 (974)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l 829 (974)
.|+.|++++|++++. ..++.+++|+.|+|++|++++..| ++.+
T Consensus 135 ---------------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 135 ---------------------------------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp ---------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred ---------------------------------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence 337788888888864 568889999999999999987655 8899
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCeeecccCeeee
Q 002055 830 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 868 (974)
Q Consensus 830 ~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g 868 (974)
++|+.|++++|++++ +|. +..+++|++|++++|+++.
T Consensus 178 ~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 999999999999985 554 8889999999999999876
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.1e-20 Score=221.90 Aligned_cols=215 Identities=19% Similarity=0.171 Sum_probs=154.4
Q ss_pred CCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCc
Q 002055 560 SSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSL 639 (974)
Q Consensus 560 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 639 (974)
.++|+.|++++|+++ . ++..++.+++|+.|++++|.....+|..+ ..+...+..|..++.+++|
T Consensus 348 ~~~L~~L~Ls~n~L~-~----Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 348 DEQLFRCELSVEKST-V----LQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp TTTSSSCCCCHHHHH-H----HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHH
T ss_pred CccceeccCChhhHH-h----hHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhc
Confidence 568999999999986 2 44667789999999998775322222111 1122334556666666666
Q ss_pred cEEE-ccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEcc
Q 002055 640 VSLH-LRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLA 718 (974)
Q Consensus 640 ~~L~-L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 718 (974)
+.|+ ++.|.+. .|+.+.+++|.+.+. | ...|+.|++++|.+++ +|. ++.+++|+.|+|+
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l-~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKM-E------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHH-H------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECC
T ss_pred ccCcchhhcccc-----------hhhhhhhhccccccc-C------ccCceEEEecCCCCCC-CcC-ccccccCcEeecC
Confidence 6666 5555432 334455555554321 1 1246667777777765 565 7888889999999
Q ss_pred CCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecC
Q 002055 719 DNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTL 798 (974)
Q Consensus 719 ~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~i 798 (974)
+|+++ .+|..++++++| +.|||++|++++ +
T Consensus 472 ~N~l~-~lp~~~~~l~~L------------------------------------------------~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCL------------------------------------------------EVLQASDNALEN-V 501 (567)
T ss_dssp SSCCC-CCCGGGGGCTTC------------------------------------------------CEEECCSSCCCC-C
T ss_pred ccccc-ccchhhhcCCCC------------------------------------------------CEEECCCCCCCC-C
Confidence 99998 888877776665 688999999986 7
Q ss_pred CcccccccCCCEEEccCceeeeec-cccccccCCCCEEECCCCcccccCCcc---ccCCCCCCeeec
Q 002055 799 PIGLTNLKALQSLNLSYNIFTGRI-PETIGAMRSLESIDFSVNKFTGEIPQS---MSSLTFLNHLNL 861 (974)
Q Consensus 799 p~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~l~g~iP~~---l~~l~~L~~L~l 861 (974)
| .++++++|+.|+|++|+|++.+ |..++.+++|+.|||++|++++.+|.. +..+++|+.||+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7 7999999999999999999887 999999999999999999999876632 234788888874
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.5e-18 Score=185.23 Aligned_cols=191 Identities=21% Similarity=0.303 Sum_probs=143.1
Q ss_pred CCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCcc
Q 002055 561 SNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLV 640 (974)
Q Consensus 561 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 640 (974)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|+
T Consensus 24 ~~~~~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~ 93 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 93 (291)
T ss_dssp HHHHHHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred HHHHHHHhcCCCcccccc------hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCC
Confidence 345556677777766433 23467899999999999854 4 48899999999999999986554 89999999
Q ss_pred EEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCC
Q 002055 641 SLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADN 720 (974)
Q Consensus 641 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 720 (974)
+|++++|++++ +| .+..+++|++|++++|++.+. + .+..+++|+.|++++|
T Consensus 94 ~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~--------------------------~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 94 WLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N--------------------------GLVHLPQLESLYLGNN 144 (291)
T ss_dssp EEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G--------------------------GGGGCTTCCEEECCSS
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-h--------------------------hhcCCCCCCEEEccCC
Confidence 99999999986 33 489999999999999988642 2 1334566777777777
Q ss_pred cCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCc
Q 002055 721 NLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPI 800 (974)
Q Consensus 721 ~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~ 800 (974)
++++. ..+..+++ |+.|++++|++++..|
T Consensus 145 ~l~~~--~~l~~l~~------------------------------------------------L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 145 KITDI--TVLSRLTK------------------------------------------------LDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCCC--GGGGGCTT------------------------------------------------CSEEECCSSCCCCCGG-
T ss_pred cCCcc--hhhccCCC------------------------------------------------CCEEEccCCccccchh-
Confidence 77643 23333332 3677777777775444
Q ss_pred ccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccc
Q 002055 801 GLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTG 844 (974)
Q Consensus 801 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 844 (974)
+..+++|+.|+|++|++++ +|. +..+++|+.||+++|+++.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred -hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 7788888888888888885 453 7888888888888888875
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.3e-18 Score=198.16 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=56.4
Q ss_pred cccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCC
Q 002055 592 QFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGEN 671 (974)
Q Consensus 592 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 671 (974)
..+.+..+.+.+..+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+|++|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 334444444443322 3344555555555555442 22 24445555555555555554332 445555555555555
Q ss_pred cccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCC
Q 002055 672 EFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLS 723 (974)
Q Consensus 672 ~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (974)
++.+ +| .+. .+++|+.|+|++|.+.+. +.+..+++|+.|+|++|+++
T Consensus 98 ~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 98 KIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 5533 22 232 345555555555555442 23445555555555555554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=171.93 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=119.5
Q ss_pred CeeeCCCccccccCCccccCCCCccEEEccCCcccccCC-cccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhcc
Q 002055 616 MMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMP-ISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILR 694 (974)
Q Consensus 616 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~ 694 (974)
+.+++++|.++ .+|..+. +.+++|++++|++++..| ..|..+++|+.|++++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------- 71 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------- 71 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-------------------
Confidence 47778887776 4565543 356777777777776644 346666677776666666643
Q ss_pred CCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEeccc
Q 002055 695 SNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVA 774 (974)
Q Consensus 695 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (974)
..+..|.++++|++|+|++|++++..|..+..++.|
T Consensus 72 ------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------------- 107 (220)
T 2v70_A 72 ------IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL-------------------------------------- 107 (220)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC--------------------------------------
T ss_pred ------ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC--------------------------------------
Confidence 334456677888888888888887666666655554
Q ss_pred chhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCC
Q 002055 775 ADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 775 ~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP 847 (974)
+.|+|++|++++..|..+.++++|+.|+|++|++++..|..|+.+++|+.|+|++|.+.+..+
T Consensus 108 ----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 108 ----------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ----------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ----------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 678899999998888889999999999999999999889999999999999999999987655
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=1.4e-17 Score=171.45 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=117.9
Q ss_pred eEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCcc
Q 002055 665 TLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTG 744 (974)
Q Consensus 665 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~ 744 (974)
.++++++.++ .+|..+ .+.++.|++++|.+++..+..+..+++|+.|+|++|++++..|..+..++.|
T Consensus 15 ~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------- 82 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------- 82 (220)
T ss_dssp EEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC--------
T ss_pred EEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC--------
Confidence 4445555442 334332 2455556666666665556677788888888888888887667766665554
Q ss_pred CccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccc
Q 002055 745 NAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPE 824 (974)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 824 (974)
+.|||++|++++..+..+.++++|+.|+|++|++++..|.
T Consensus 83 ----------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 83 ----------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 6788888888854444568899999999999999988899
Q ss_pred cccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCC
Q 002055 825 TIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 825 ~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP 871 (974)
.|+.+++|+.|||++|++++..|..+..+++|++|++++|++.+..+
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999999999999999998888889999999999999999987654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.6e-17 Score=172.13 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=121.4
Q ss_pred CeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCc
Q 002055 664 MTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFT 743 (974)
Q Consensus 664 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~ 743 (974)
+.++.+++.+ +.+|..+ .++|++|++++|.+++..|..+..+++|+.|+|++|++++..+..+..++.|
T Consensus 22 ~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------- 90 (229)
T 3e6j_A 22 TTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------- 90 (229)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-------
Confidence 3455555554 3444432 3556666666666666667777888889999999998864444444544444
Q ss_pred cCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeecc
Q 002055 744 GNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIP 823 (974)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 823 (974)
+.|||++|++++..+..++.+++|+.|+|++|+|+ .+|
T Consensus 91 -----------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 91 -----------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred -----------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 78899999998766666789999999999999999 889
Q ss_pred ccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeecCCC
Q 002055 824 ETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 872 (974)
Q Consensus 824 ~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~ 872 (974)
..++.+++|+.|||++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9999999999999999999977777899999999999999999988763
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=9.5e-18 Score=186.97 Aligned_cols=178 Identities=25% Similarity=0.202 Sum_probs=111.4
Q ss_pred CeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccc-cCCCCCeEeccCCcccccCchhHHhhhhhhhhhhcc
Q 002055 616 MMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLK-NCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILR 694 (974)
Q Consensus 616 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~ 694 (974)
+.+++++|.+. .+|..+. +.++.|+|++|++++..+..+. ++++|+.|+|++|++.+..|..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------------- 83 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA-------------- 83 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT--------------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh--------------
Confidence 57888888887 5676553 4688888888888877777776 7888888888888876544443
Q ss_pred CCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEeccc
Q 002055 695 SNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVA 774 (974)
Q Consensus 695 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (974)
|.++++|+.|+|++|++++..+..+..++.|
T Consensus 84 -----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------------- 114 (361)
T 2xot_A 84 -----------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL-------------------------------------- 114 (361)
T ss_dssp -----------TTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------------
T ss_pred -----------ccCCCCCCEEECCCCcCCcCCHHHhCCCcCC--------------------------------------
Confidence 4445555555555555554333333333332
Q ss_pred chhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccc---cccCCCCEEECCCCcccccCCcccc
Q 002055 775 ADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETI---GAMRSLESIDFSVNKFTGEIPQSMS 851 (974)
Q Consensus 775 ~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~l~~L~~LdLs~N~l~g~iP~~l~ 851 (974)
+.|+|++|++++..|..+.++++|+.|+|++|+|++..+..+ +.+++|+.|||++|++++..+..+.
T Consensus 115 ----------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 184 (361)
T 2xot_A 115 ----------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184 (361)
T ss_dssp ----------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred ----------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence 455666666665555666666666666666666664333333 4566667777777766654445555
Q ss_pred CCCC--CCeeecccCeeeec
Q 002055 852 SLTF--LNHLNLSNNYLTGK 869 (974)
Q Consensus 852 ~l~~--L~~L~ls~N~l~g~ 869 (974)
.++. ++.|++++|++.+.
T Consensus 185 ~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp HSCHHHHTTEECCSSCEECC
T ss_pred hccHhhcceEEecCCCccCC
Confidence 5554 36667777766654
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3e-18 Score=207.74 Aligned_cols=158 Identities=23% Similarity=0.257 Sum_probs=82.5
Q ss_pred CCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccc---------cCCcccccCCCCCeeeCCCccccccCCc
Q 002055 561 SNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQG---------NLPDCWMSYQNLMMLDLSNNKFIGNLPT 631 (974)
Q Consensus 561 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~---------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 631 (974)
+.++.|++.+|.+... + ...++.++|+.|.+.+ ..|..+..++.|+.|+|++|.+. .+|.
T Consensus 173 ~~~~~l~L~~n~~~~~-~---------~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-N---------QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA 241 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCS-CCCG
T ss_pred CccceEEeeCCCCCcc-h---------hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh
Confidence 4577788888877652 1 1234445555554443 33556667777777777777776 5666
Q ss_pred cccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCC
Q 002055 632 SFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAF 711 (974)
Q Consensus 632 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~ 711 (974)
.+..+++|++|+|++|+++ .+|..|.++++|++|+|++|+++ .+|..++ .+++|++|+|++|.++ .+|..|+++++
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~ 317 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCN 317 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTT
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCC
Confidence 6666777777777777777 66777777777777777777776 5676665 5677777777777765 56666777777
Q ss_pred CcEEEccCCcCCCCCChhhccc
Q 002055 712 LQILDLADNNLSGTLPNCIHNL 733 (974)
Q Consensus 712 L~~L~Ls~N~l~g~ip~~~~~l 733 (974)
|+.|+|++|+++|.+|..+..+
T Consensus 318 L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 318 LQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CCCEECTTSCCCSHHHHHHHHH
T ss_pred ccEEeCCCCccCCCChHHHhhc
Confidence 7777777777777666665443
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.8e-18 Score=206.84 Aligned_cols=222 Identities=18% Similarity=0.101 Sum_probs=109.7
Q ss_pred CcccccccccccccccCCcccccCCCCC-----eeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCC
Q 002055 589 MKLQFLFLDRNILQGNLPDCWMSYQNLM-----MLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSL 663 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 663 (974)
+.++.|+|.+|.+... +..+.....|. .++++.|.+. ..|..+..++.|+.|+|++|++. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4567777777777652 33322222222 2223333333 44667777888888888888887 677777788888
Q ss_pred CeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCc
Q 002055 664 MTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFT 743 (974)
Q Consensus 664 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~ 743 (974)
++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..++++++|+.|+|++|.++ .+|..++++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------- 318 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------- 318 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-------
T ss_pred CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-------
Confidence 88888888886 7787776 6788888888888887 67888888888888888888886 777766666555
Q ss_pred cCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccC-CCEEEccCceeeeec
Q 002055 744 GNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKA-LQSLNLSYNIFTGRI 822 (974)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~i 822 (974)
+.|||++|.|+|.+|..++.+.. +..|+|++|.++|.+
T Consensus 319 -----------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 319 -----------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp -----------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred -----------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 56788888888888877655432 234778888888877
Q ss_pred cccccccCCCCEEECCCC--------cccccCCccccCCCCCCeeecccCeeeecCC
Q 002055 823 PETIGAMRSLESIDFSVN--------KFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 823 p~~l~~l~~L~~LdLs~N--------~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP 871 (974)
|.. |+.|++++| .+.+.++..+.++..+....+++|-+.+...
T Consensus 358 p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 358 PHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp CCC-----------------------------------------------CCCGGGC
T ss_pred ccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 764 445566666 4444445555666677777788887765443
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.6e-17 Score=165.47 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=78.6
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
+.|||++|++++.+|..++++++|+.|+|++|+|++..|..|+.+++|+.|||++|++++.+|..+..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 67888888888888888889999999999999999888888999999999999999999988999999999999999999
Q ss_pred eeeecCCC
Q 002055 865 YLTGKIPS 872 (974)
Q Consensus 865 ~l~g~iP~ 872 (974)
+++|.+|-
T Consensus 137 ~l~c~c~l 144 (192)
T 1w8a_A 137 PFNCNCHL 144 (192)
T ss_dssp CBCCSGGG
T ss_pred CccCcCcc
Confidence 99988774
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.8e-17 Score=166.21 Aligned_cols=156 Identities=15% Similarity=0.267 Sum_probs=107.1
Q ss_pred ccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCC
Q 002055 633 FGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFL 712 (974)
Q Consensus 633 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L 712 (974)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+.. + ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~-------------------------~~l~~l~~L 90 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--Y-------------------------NPISGLSNL 90 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--C-------------------------GGGTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--c-------------------------hhhhcCCCC
Confidence 356788899999998888 556 68888888888888885521 1 134455666
Q ss_pred cEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccc
Q 002055 713 QILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKN 792 (974)
Q Consensus 713 ~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N 792 (974)
+.|++++|++++..|..++.++.| +.|++++|
T Consensus 91 ~~L~l~~n~l~~~~~~~l~~l~~L------------------------------------------------~~L~Ls~n 122 (197)
T 4ezg_A 91 ERLRIMGKDVTSDKIPNLSGLTSL------------------------------------------------TLLDISHS 122 (197)
T ss_dssp CEEEEECTTCBGGGSCCCTTCTTC------------------------------------------------CEEECCSS
T ss_pred CEEEeECCccCcccChhhcCCCCC------------------------------------------------CEEEecCC
Confidence 677777776665555555444433 56677777
Q ss_pred cceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeee
Q 002055 793 FFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 868 (974)
Q Consensus 793 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g 868 (974)
++++..|..++++++|+.|+|++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|++.+
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7776667777777778888888887333566 57778888888888888875 44 67778888888888887654
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=7.5e-17 Score=165.89 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=116.7
Q ss_pred CeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccC
Q 002055 616 MMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRS 695 (974)
Q Consensus 616 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~ 695 (974)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|..+++|+.|+|++|++.+.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------------------- 71 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------------------- 71 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------------------
Confidence 56788888876 5666553 6788888888888876666777777777777777776543
Q ss_pred CccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccc
Q 002055 696 NYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAA 775 (974)
Q Consensus 696 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (974)
.|..|.++++|++|+|++|++++..+..+..+++|
T Consensus 72 ------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L--------------------------------------- 106 (220)
T 2v9t_B 72 ------APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL--------------------------------------- 106 (220)
T ss_dssp ------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred ------CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC---------------------------------------
Confidence 34556677788888888888874333334444443
Q ss_pred hhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccc
Q 002055 776 DYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTG 844 (974)
Q Consensus 776 ~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 844 (974)
+.|+|++|++++..|..++++++|+.|+|++|+|++..|..+..+++|+.|+|++|.+..
T Consensus 107 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 107 ---------QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ---------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ---------CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 678888888888778888899999999999999998888889999999999999998875
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=4.8e-17 Score=181.24 Aligned_cols=130 Identities=24% Similarity=0.211 Sum_probs=110.3
Q ss_pred ccccccccccccccCCcccccCCCCCeeeCCCccccccCCcccc-CCCCccEEEccCCcccccCCcccccCCCCCeEecc
Q 002055 591 LQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFG-SLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVG 669 (974)
Q Consensus 591 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 669 (974)
-+.++++++.++. +|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3679999999884 676553 4689999999999988888887 89999999999999998888899999999999999
Q ss_pred CCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCC
Q 002055 670 ENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSG 724 (974)
Q Consensus 670 ~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 724 (974)
+|++.+..+..+. .+++|+.|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus 97 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 97 SNHLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 9999776665565 57888888888888887777888888888888888888774
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=8.4e-17 Score=162.63 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=111.7
Q ss_pred ccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhh
Q 002055 608 CWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSI 687 (974)
Q Consensus 608 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 687 (974)
....+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++.+..|.
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-------- 106 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIP-------- 106 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSC--------
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccCh--------
Confidence 3467889999999999998 666 6889999999999999775 345788899999999988887654444
Q ss_pred hhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeE
Q 002055 688 MVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQAL 767 (974)
Q Consensus 688 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (974)
.+..+++|+.|++++|++++..|..++.++.|
T Consensus 107 -----------------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L------------------------------- 138 (197)
T 4ezg_A 107 -----------------NLSGLTSLTLLDISHSAHDDSILTKINTLPKV------------------------------- 138 (197)
T ss_dssp -----------------CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC-------------------------------
T ss_pred -----------------hhcCCCCCCEEEecCCccCcHhHHHHhhCCCC-------------------------------
Confidence 34455666666666666665555555444433
Q ss_pred EEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccc
Q 002055 768 VVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTG 844 (974)
Q Consensus 768 ~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 844 (974)
+.|++++|++.+.+| .++++++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus 139 -----------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 -----------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -----------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred -----------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 566666666333455 46777778888888888775 44 67778888888888887654
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.1e-17 Score=172.82 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
+.++..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455777888888877543 4778888888888888887 455 67788888888888888886544 78888888888
Q ss_pred ccCCcccc
Q 002055 668 VGENEFFG 675 (974)
Q Consensus 668 Ls~N~l~~ 675 (974)
+++|++.+
T Consensus 92 L~~N~l~~ 99 (263)
T 1xeu_A 92 VNRNRLKN 99 (263)
T ss_dssp CCSSCCSC
T ss_pred CCCCccCC
Confidence 88888754
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=3.6e-17 Score=173.29 Aligned_cols=171 Identities=20% Similarity=0.281 Sum_probs=126.1
Q ss_pred cCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhh
Q 002055 611 SYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVF 690 (974)
Q Consensus 611 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~ 690 (974)
++.++..+++++|.+++.. .+..+++|++|++++|+++ .+| .+..+++|++|++++|++.+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~--------------- 77 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD--------------- 77 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC---------------
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC---------------
Confidence 4556777777777776432 4566777777777777776 344 56667777777777776643
Q ss_pred hhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEE
Q 002055 691 LILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVM 770 (974)
Q Consensus 691 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (974)
..| +..+++|+.|++++|++++ +|....
T Consensus 78 ----------~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--------------------------------------- 105 (263)
T 1xeu_A 78 ----------LSP--LKDLTKLEELSVNRNRLKN-LNGIPS--------------------------------------- 105 (263)
T ss_dssp ----------CGG--GTTCSSCCEEECCSSCCSC-CTTCCC---------------------------------------
T ss_pred ----------Chh--hccCCCCCEEECCCCccCC-cCcccc---------------------------------------
Confidence 222 5567778888888888774 332111
Q ss_pred ecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccc
Q 002055 771 KGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSM 850 (974)
Q Consensus 771 ~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l 850 (974)
..|+.|+|++|++++ +| .++++++|+.|+|++|++++. | .++.+++|+.||+++|++++. ..+
T Consensus 106 -----------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 106 -----------ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp -----------SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred -----------CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHh
Confidence 223788889998885 44 588899999999999999864 4 688999999999999999976 678
Q ss_pred cCCCCCCeeecccCeeeec
Q 002055 851 SSLTFLNHLNLSNNYLTGK 869 (974)
Q Consensus 851 ~~l~~L~~L~ls~N~l~g~ 869 (974)
..+++|++|++++|++++.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCCCCEEEEEEEEEECC
T ss_pred ccCCCCCEEeCCCCcccCC
Confidence 8899999999999999876
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=2e-16 Score=158.98 Aligned_cols=132 Identities=22% Similarity=0.286 Sum_probs=102.2
Q ss_pred CeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCc-cccCCCCCcEEEccCCcCCCCCChhhcccccccccCCC
Q 002055 664 MTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPT-KLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPF 742 (974)
Q Consensus 664 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~ 742 (974)
+++++++|.+ +.+|..+. ..++.|++++|++++..+. .+..+++|+.|++++|++++..|..+..++.|
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 3455555554 34444322 2555556666665555443 37778889999999999988778777766655
Q ss_pred ccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeec
Q 002055 743 TGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRI 822 (974)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 822 (974)
+.|||++|++++..|..++++++|+.|+|++|+|++.+
T Consensus 81 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 81 ------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118 (192)
T ss_dssp ------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred ------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC
Confidence 68899999999888888999999999999999999999
Q ss_pred cccccccCCCCEEECCCCcccccCC
Q 002055 823 PETIGAMRSLESIDFSVNKFTGEIP 847 (974)
Q Consensus 823 p~~l~~l~~L~~LdLs~N~l~g~iP 847 (974)
|..++.+++|+.|||++|.+++..|
T Consensus 119 ~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 119 PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999999999999999998766
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.4e-15 Score=146.02 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=103.8
Q ss_pred hhhhhhhhccCCccc-cccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccc
Q 002055 685 FSIMVFLILRSNYFH-GLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVT 763 (974)
Q Consensus 685 ~~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 763 (974)
.++++.|++++|.++ +.+|..+..+++|+.|++++|++++. ..++.++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 466777777777777 67777788888999999999988754 33433333
Q ss_pred eeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeee-ccccccccCCCCEEECCCCcc
Q 002055 764 EQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGR-IPETIGAMRSLESIDFSVNKF 842 (974)
Q Consensus 764 ~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l 842 (974)
|+.||+++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|+.||+++|++
T Consensus 66 --------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 66 --------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp --------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred --------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 37889999999888888888899999999999999874 458899999999999999999
Q ss_pred cccCC---ccccCCCCCCeeeccc
Q 002055 843 TGEIP---QSMSSLTFLNHLNLSN 863 (974)
Q Consensus 843 ~g~iP---~~l~~l~~L~~L~ls~ 863 (974)
++..+ ..+..+++|++||+++
T Consensus 126 ~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 126 TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cchHHHHHHHHHHCCCcccccCCC
Confidence 97766 5788899999999874
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=2.2e-15 Score=147.92 Aligned_cols=83 Identities=23% Similarity=0.184 Sum_probs=62.4
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeec-cccccccCCCCEEECCCCcccccCC---ccccCCCCCCeee
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRI-PETIGAMRSLESIDFSVNKFTGEIP---QSMSSLTFLNHLN 860 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~l~g~iP---~~l~~l~~L~~L~ 860 (974)
+.|||++|++++.+|..++++++|+.|+|++|++++.. +..++.+++|+.||+++|++++..+ ..+..+++|++|+
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 66777777777667776677788888888888887532 2677888888888888888886555 4777888888888
Q ss_pred cccCeee
Q 002055 861 LSNNYLT 867 (974)
Q Consensus 861 ls~N~l~ 867 (974)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 8888764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=145.96 Aligned_cols=129 Identities=23% Similarity=0.299 Sum_probs=104.5
Q ss_pred hhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEE
Q 002055 691 LILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVM 770 (974)
Q Consensus 691 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (974)
+++++|.++ .+|..+. ++|+.|++++|+++ .+|..+..++.|
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L---------------------------------- 56 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL---------------------------------- 56 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC----------------------------------
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC----------------------------------
Confidence 444444443 3444332 47888999999887 677666555544
Q ss_pred ecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccc
Q 002055 771 KGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSM 850 (974)
Q Consensus 771 ~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l 850 (974)
+.|||++|++++..|..+.++++|+.|+|++|+|++..|..|+.+++|+.|+|++|++++..+..+
T Consensus 57 --------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 57 --------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred --------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 788999999998777889999999999999999998888899999999999999999997767779
Q ss_pred cCCCCCCeeecccCeeeecCC
Q 002055 851 SSLTFLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 851 ~~l~~L~~L~ls~N~l~g~iP 871 (974)
..+++|++|++++|++.+...
T Consensus 123 ~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 123 NDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTCTTCCEEECCSSCEECSGG
T ss_pred hcCccccEEEeCCCCeecCCc
Confidence 999999999999999987654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=5.5e-15 Score=145.10 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCccEEEccCCccc-ccCCcccccCCCCCeEeccCCcccccCchhHHhhhhhhhhhhccCCccccccCccccCCCCCcEE
Q 002055 637 SSLVSLHLRKNRLS-GTMPISLKNCTSLMTLDVGENEFFGNIPSWFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQIL 715 (974)
Q Consensus 637 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 715 (974)
++|++|++++|+++ +.+|..+..+++|++|++++|. +++. ..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------------------------l~~~--~~~~~l~~L~~L 76 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------------------------LISV--SNLPKLPKLKKL 76 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------------------------CCCC--SSCCCCSSCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------------------------CCCh--hhhccCCCCCEE
Confidence 45566666666555 4455555555555555555554 4433 457778889999
Q ss_pred EccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccce
Q 002055 716 DLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFS 795 (974)
Q Consensus 716 ~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~ 795 (974)
++++|++++.+|..+..++.| +.|||++|+++
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L------------------------------------------------~~L~Ls~N~l~ 108 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNL------------------------------------------------THLNLSGNKLK 108 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTC------------------------------------------------CEEECBSSSCC
T ss_pred ECcCCcCchHHHHHHhhCCCC------------------------------------------------CEEeccCCccC
Confidence 999999987777766655554 68899999998
Q ss_pred ec-CCcccccccCCCEEEccCceeeeecc---ccccccCCCCEEECCCCcccccCCcc
Q 002055 796 GT-LPIGLTNLKALQSLNLSYNIFTGRIP---ETIGAMRSLESIDFSVNKFTGEIPQS 849 (974)
Q Consensus 796 g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip---~~l~~l~~L~~LdLs~N~l~g~iP~~ 849 (974)
+. .+..++.+++|+.|++++|.+++..+ ..+..+++|+.||+++|.+. .+|.+
T Consensus 109 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 63 22678899999999999999996555 47899999999999999987 55654
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=4.2e-15 Score=163.33 Aligned_cols=219 Identities=13% Similarity=0.059 Sum_probs=125.7
Q ss_pred CCcccccccccccccccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcc----cccCCcccccCCCC
Q 002055 588 GMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRL----SGTMPISLKNCTSL 663 (974)
Q Consensus 588 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L 663 (974)
|++|+.+++.+ .++..-+.+|.+|++|+.+++++|.+....+..|.++.++..+....+.. ....+.+|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77788888877 67666667777888888888888877766667777777777666655322 22234456666777
Q ss_pred C-eEeccCCcccccCchhHHhh---hhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhccccccccc
Q 002055 664 M-TLDVGENEFFGNIPSWFGEM---FSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATV 739 (974)
Q Consensus 664 ~-~L~Ls~N~l~~~~p~~~~~~---~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l 739 (974)
+ .+++... +.++..+... ..+++.+.+.++-.......-...+++|+.+++++|+++..-+..|.++++|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 6 4555432 2233322211 2233333333321111111111125677777777776662222344444443
Q ss_pred CCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCC-EEEccCcee
Q 002055 740 NPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQ-SLNLSYNIF 818 (974)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l 818 (974)
+.++|++| ++..-+..|.++++|+ .+++.+ .+
T Consensus 253 ---------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 253 ---------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp ---------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred ---------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 45666665 5533344566777777 777766 56
Q ss_pred eeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeee
Q 002055 819 TGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN 860 (974)
Q Consensus 819 ~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ 860 (974)
+..-+..|.++++|+.+++++|+++..-+..|.++++|+.++
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 644456677777777777777777755556677777777664
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.6e-14 Score=143.01 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
+.|++++|++++..+..++++++|+.|+|++|++++..|..++.+++|+.||+++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 67788888888655566788999999999999999877777899999999999999999766666788999999999999
Q ss_pred eeeecCCC
Q 002055 865 YLTGKIPS 872 (974)
Q Consensus 865 ~l~g~iP~ 872 (974)
+++|.+|.
T Consensus 135 ~~~~~~~~ 142 (177)
T 2o6r_A 135 PWDCSCPR 142 (177)
T ss_dssp CBCCCHHH
T ss_pred CeeccCcc
Confidence 99998874
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=4.7e-16 Score=157.28 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=89.1
Q ss_pred CCCCeEeccCCcccccCch------hHHhhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccc
Q 002055 661 TSLMTLDVGENEFFGNIPS------WFGEMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLT 734 (974)
Q Consensus 661 ~~L~~L~Ls~N~l~~~~p~------~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 734 (974)
..++.++++.+.+.|.+|. .+. .+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444444444444444333 333 34445555555555544 34 5555666777777777766 4554444333
Q ss_pred cccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhccceeeEEEeccccceecCCcccccccCCCEEEcc
Q 002055 735 AMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLPIGLTNLKALQSLNLS 814 (974)
Q Consensus 735 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 814 (974)
.| +.|||++|++++ +| .++++++|+.|+|+
T Consensus 94 ~L------------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 94 TL------------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HC------------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred cC------------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 33 567777777775 44 56777777777777
Q ss_pred Cceeeeecc-ccccccCCCCEEECCCCcccccCCcc----------ccCCCCCCeeecccCee
Q 002055 815 YNIFTGRIP-ETIGAMRSLESIDFSVNKFTGEIPQS----------MSSLTFLNHLNLSNNYL 866 (974)
Q Consensus 815 ~N~l~g~ip-~~l~~l~~L~~LdLs~N~l~g~iP~~----------l~~l~~L~~L~ls~N~l 866 (974)
+|++++..+ ..++.+++|+.|++++|.+++.+|.. +..+++|++|| +|++
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 777774322 35677777777777777777776653 66677777776 4444
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.1e-14 Score=139.86 Aligned_cols=127 Identities=21% Similarity=0.200 Sum_probs=66.4
Q ss_pred Cccccccccccccc-ccCCcccccCCCCCeeeCCCccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEe
Q 002055 589 MKLQFLFLDRNILQ-GNLPDCWMSYQNLMMLDLSNNKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLD 667 (974)
Q Consensus 589 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 667 (974)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555555 45555555566666666666665543 4455555666666666666555555555555666666
Q ss_pred ccCCccccc-CchhHHhhhhhhhhhhccCCccccccC---ccccCCCCCcEEEcc
Q 002055 668 VGENEFFGN-IPSWFGEMFSIMVFLILRSNYFHGLLP---TKLCDLAFLQILDLA 718 (974)
Q Consensus 668 Ls~N~l~~~-~p~~~~~~~~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls 718 (974)
+++|++.+. .|..+. .+++|+.|++++|++++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666655442 223333 34444444444444444333 234444555555443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=3.5e-14 Score=155.96 Aligned_cols=221 Identities=13% Similarity=0.075 Sum_probs=108.3
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCC----CCCCchHhhhcCCCC
Q 002055 269 LSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNS----LEGRIPRSMARLCNL 344 (974)
Q Consensus 269 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L 344 (974)
+++|+.|++.. .++..-+.+|..+++|+++++++|.+....+..|.++.++..+....+. ........|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 4444444455556666666666555554444455555555544443311 111112234444455
Q ss_pred c-EEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCE
Q 002055 345 K-RLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRV 423 (974)
Q Consensus 345 ~-~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 423 (974)
+ .+.+.... .++..... ....+.+++.+.+.++-...........+++|+.+++++|+++.+.+..|.++++|+.
T Consensus 179 ~~~i~~~~~~---~l~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMK-AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHH-TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhh-cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 4 33333221 12221000 0011122444444333111111111123677777777777777766667777777777
Q ss_pred EEccCCcccceechhhhcCCCCCc-EEEcCCccccccccCCCCCcccceeEeccCCCCCCCCCccccCCCCCCEE
Q 002055 424 LQLYRNKLHGTLSEIHFVNLTKLS-VFLVGENTLTLKVRRDWIPPFQLIELGLRSCNVGSRFPLWLYSQKDLQFL 497 (974)
Q Consensus 424 L~L~~n~l~~~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L 497 (974)
+++.+| ++ .++...|.+|++|+ .+++.+ .++......|..+.+|+.+++.++.+...-+..|.++++|+.+
T Consensus 255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 777776 43 56666777777777 777766 4544444444444444444444444443333444444444444
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.6e-15 Score=153.26 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=104.7
Q ss_pred cccCCCCCeeeCCCccccccCCc------cccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccCchhHH
Q 002055 609 WMSYQNLMMLDLSNNKFIGNLPT------SFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNIPSWFG 682 (974)
Q Consensus 609 l~~l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 682 (974)
+.....++.++++.+.+.|.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|++. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45567788888888888887776 67777777777777777775 55 6777777777777777775 4554433
Q ss_pred hhhhhhhhhhccCCccccccCccccCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCcccccccc
Q 002055 683 EMFSIMVFLILRSNYFHGLLPTKLCDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSV 762 (974)
Q Consensus 683 ~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 762 (974)
.+++|+.|++++|++++ +| .+..++.|
T Consensus 91 -------------------------~~~~L~~L~L~~N~l~~-l~-~~~~l~~L-------------------------- 117 (198)
T 1ds9_A 91 -------------------------VADTLEELWISYNQIAS-LS-GIEKLVNL-------------------------- 117 (198)
T ss_dssp -------------------------HHHHCSEEEEEEEECCC-HH-HHHHHHHS--------------------------
T ss_pred -------------------------cCCcCCEEECcCCcCCc-CC-ccccCCCC--------------------------
Confidence 33445666666666653 33 23333333
Q ss_pred ceeeEEEEecccchhhhccceeeEEEeccccceecCC-cccccccCCCEEEccCceeeeecccc----------ccccCC
Q 002055 763 TEQALVVMKGVAADYSEILNLVRIIDVSKNFFSGTLP-IGLTNLKALQSLNLSYNIFTGRIPET----------IGAMRS 831 (974)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~----------l~~l~~ 831 (974)
+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++
T Consensus 118 ----------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 118 ----------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp ----------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred ----------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 566777777764222 35777888888888888888777664 778888
Q ss_pred CCEEECCCCccc
Q 002055 832 LESIDFSVNKFT 843 (974)
Q Consensus 832 L~~LdLs~N~l~ 843 (974)
|+.|| .|.++
T Consensus 176 L~~Ld--~~~i~ 185 (198)
T 1ds9_A 176 LKKLD--GMPVD 185 (198)
T ss_dssp CSEEC--CGGGT
T ss_pred cEEEC--CcccC
Confidence 88887 56555
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=9.7e-13 Score=131.88 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=105.9
Q ss_pred ceeeccCccCCCCCCCCCCCCcEEECcCCccccccchhhHHhhhcCCcccccccccccccccCCcccccCCCCCeeeCCC
Q 002055 543 SFLRLMANNLSGPLPLISSNLIGLDLSGNSFSGSIFHFLCYTINAGMKLQFLFLDRNILQGNLPDCWMSYQNLMMLDLSN 622 (974)
Q Consensus 543 ~~L~l~~n~l~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 622 (974)
+.+++++|.++......+.++++|++++|+++ .+| ..+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip----~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVP----KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCC----GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhH----HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34555566555433334567888888888887 344 3566788999999999999988888899999999999999
Q ss_pred ccccccCCccccCCCCccEEEccCCcccccCCcccccCCCCCeEeccCCcccccC
Q 002055 623 NKFIGNLPTSFGSLSSLVSLHLRKNRLSGTMPISLKNCTSLMTLDVGENEFFGNI 677 (974)
Q Consensus 623 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 677 (974)
|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++....
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 9999888888999999999999999999777777899999999999999987643
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=4.1e-12 Score=142.44 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=137.5
Q ss_pred CCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCe
Q 002055 120 DLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEH 199 (974)
Q Consensus 120 ~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 199 (974)
.+..++.+.+.. .++.+ -...|..+ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+...+|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 346677777765 34433 23455554 7888888766 665666777774 688888875 778888888888888888
Q ss_pred ecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccC
Q 002055 200 LDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGY 279 (974)
Q Consensus 200 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 279 (974)
++++.|.++.++...+. ..+|+.+.+.. .++.+...+|.++++|+.+++..+ ++... ...|.+ .+|+.+.+.
T Consensus 185 l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~-~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIG-QEAFRE-SGITTVKLP- 256 (401)
T ss_dssp EECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEEC-TTTTTT-CCCSEEEEE-
T ss_pred eecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcc-cccccc-CCccEEEeC-
Confidence 88888888887766553 47888888874 477777888888888888888764 32211 333334 667777773
Q ss_pred cccccCCCcccCCCCCCCEEEcCCCCCC-----CCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEc
Q 002055 280 NNFHGPIPEGLQSLTSLKHLDLSFNHFN-----SSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYL 349 (974)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 349 (974)
+.++..-..+|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++......|..+++|+.+.+
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 3344444556677777777777666543 12334455555566555552 243333344444455554444
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1.7e-12 Score=128.42 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=75.1
Q ss_pred cEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCC
Q 002055 224 VELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSF 303 (974)
Q Consensus 224 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 303 (974)
+.+++++++++.++... .++|++|++++|++++.. +..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34444555544443221 245555555555555422 33445556666666666666544444556666666666666
Q ss_pred CCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCcch
Q 002055 304 NHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQEIS 359 (974)
Q Consensus 304 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 359 (974)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66665555555666666666666666665444445666666666666666665544
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=2.6e-13 Score=133.03 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=81.5
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
+.|+|++|++++..|..++++++|+.|+|++|+|++..|..|+.+++|+.|||++|++++..|..+..+++|++|++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 78999999999888999999999999999999999877778899999999999999999877778999999999999999
Q ss_pred eeeecCCC
Q 002055 865 YLTGKIPS 872 (974)
Q Consensus 865 ~l~g~iP~ 872 (974)
++.+.++.
T Consensus 113 ~~~c~c~~ 120 (170)
T 3g39_A 113 PWDCACSD 120 (170)
T ss_dssp CBCTTBGG
T ss_pred CCCCCchh
Confidence 99988764
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=3.3e-12 Score=143.18 Aligned_cols=245 Identities=11% Similarity=0.078 Sum_probs=186.3
Q ss_pred CcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCC
Q 002055 116 PSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLS 195 (974)
Q Consensus 116 ~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 195 (974)
.+|.++ +|+.+++..+ ++.+ -...|..+ +|+.+.+.. .+....+.+|.++++|+.+++++|.++.++..+|. +.
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred hhcccC-CccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 456664 7999999876 6554 33456664 799999986 66666778899999999999999999999999998 58
Q ss_pred CCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEE
Q 002055 196 FLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFL 275 (974)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 275 (974)
+|+.+.+..+ +..++... +..+++|+.+++.. .++.+...+|.+ .+|+.+.+.. .++... ...|.++++|+.+
T Consensus 204 ~L~~l~lp~~-l~~I~~~a--F~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~-~~aF~~c~~L~~l 276 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQA--FLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN-GVTNIA-SRAFYYCPELAEV 276 (401)
T ss_dssp CCSEEECCTT-CCEECTTT--TTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET-TCCEEC-TTTTTTCTTCCEE
T ss_pred ccCEEEeCCc-hheehhhH--hhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC-CccEEC-hhHhhCCCCCCEE
Confidence 9999999844 66665544 36789999999987 478888888888 7899999954 444322 6678899999999
Q ss_pred EccCcccc-----cCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEcc
Q 002055 276 NLGYNNFH-----GPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLS 350 (974)
Q Consensus 276 ~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (974)
++.++.+. ...+..|..+++|+.+++.+ .++.....+|.++++|+.+.+..+ ++..-...|..+ +|+.+++.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 99988765 34457899999999999984 576566678999999999999665 665556778888 99999999
Q ss_pred CCCCCCcchhhhhhhcccCCCCCceeeCCC
Q 002055 351 GAKLNQEISEILDIFSGCVPNGLESLVLPN 380 (974)
Q Consensus 351 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 380 (974)
+|......+. .+..++..++.|++..
T Consensus 354 ~n~~~~l~~~----~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 354 GTTPPQVFEK----VWYGFPDDITVIRVPA 379 (401)
T ss_dssp CSSCCBCCCS----SCCCSCTTCCEEEECG
T ss_pred CCCCcccccc----cccCCCCCccEEEeCH
Confidence 9876543322 3333443344444443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=2e-13 Score=134.97 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccc--cccccCCCCEEECCCCcccccCCcc----ccCCCCCCe
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPE--TIGAMRSLESIDFSVNKFTGEIPQS----MSSLTFLNH 858 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~LdLs~N~l~g~iP~~----l~~l~~L~~ 858 (974)
+.|||++|++++..|..++.+++|+.|+|++|+++ .+|. .++.+++|+.|++++|.++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 45556666665433333366777777777777775 5565 6777788888888888877 45654 777788888
Q ss_pred eecccCeeee
Q 002055 859 LNLSNNYLTG 868 (974)
Q Consensus 859 L~ls~N~l~g 868 (974)
||+++|....
T Consensus 145 Ld~~~n~~~~ 154 (176)
T 1a9n_A 145 LDFQKVKLKE 154 (176)
T ss_dssp ETTEECCHHH
T ss_pred eCCCcCCHHH
Confidence 8888876543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.2e-13 Score=133.49 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=93.3
Q ss_pred CcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCC
Q 002055 116 PSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLS 195 (974)
Q Consensus 116 ~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 195 (974)
+.+.++.+|++|++++|.++. +|......++|++|++++|.+++. ..++++++|++|++++|.++.+++..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345678899999999999985 555444445999999999998865 6788899999999999999888776677788
Q ss_pred CCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCC---CCcCCCCCCEEeCCCCC
Q 002055 196 FLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPL---PVANFSTLTTLDLSHNQ 256 (974)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~ 256 (974)
+|++|++++|.+..++... .+..+++|++|++++|.++..+.. .+..+++|++||++.|.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~-~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLD-PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGG-GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhH-hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888888776655421 233455555555555555543321 23444444444444443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=7.2e-13 Score=130.29 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=79.3
Q ss_pred eEEEeccccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccC
Q 002055 785 RIIDVSKNFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 864 (974)
Q Consensus 785 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N 864 (974)
+.|+|++|++++..|..++++++|+.|+|++|+|++..+..|+.+++|+.|||++|++++..|..+..+++|++|++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 78999999999888999999999999999999999766667899999999999999999766667999999999999999
Q ss_pred eeeecCCC
Q 002055 865 YLTGKIPS 872 (974)
Q Consensus 865 ~l~g~iP~ 872 (974)
++.+..+.
T Consensus 116 ~~~c~~~~ 123 (174)
T 2r9u_A 116 PWDCECRD 123 (174)
T ss_dssp CBCTTBGG
T ss_pred Cccccccc
Confidence 99876553
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=4.4e-11 Score=134.67 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=43.6
Q ss_pred cccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCcc
Q 002055 141 RFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSY 204 (974)
Q Consensus 141 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~ 204 (974)
..|..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.++..+|.++.+|+.+.+..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 45667788888888643 55455567788888888888644 6667777777777777766653
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=5.9e-11 Score=133.64 Aligned_cols=310 Identities=14% Similarity=0.091 Sum_probs=171.1
Q ss_pred CcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCC
Q 002055 116 PSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLS 195 (974)
Q Consensus 116 ~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 195 (974)
.+|.++.+|+.++|..+ ++.+ -...|..+++|+.+++..+ ++.....+|.++.+|+.+.+..+ +..+...+|.++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 57889999999999753 6654 3457889999999999765 55455678899999998877644 6666777777776
Q ss_pred CCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEE
Q 002055 196 FLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFL 275 (974)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 275 (974)
.++........ .+... .+..+++|+.+.+.++ +..+....|.++.+|+.+++..+ ++. +....+.++..|+.+
T Consensus 141 ~~~~~~~~~~~--~i~~~--aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~-I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 141 FKEITIPEGVT--VIGDE--AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI-IRDYCFAECILLENM 213 (394)
T ss_dssp CSEEECCTTCC--EECTT--TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE-ECTTTTTTCTTCCBC
T ss_pred ccccccCcccc--ccchh--hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE-eCchhhcccccccee
Confidence 54444333222 12111 2355677777777543 45556667777777777777654 221 113445566666666
Q ss_pred EccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCC
Q 002055 276 NLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLN 355 (974)
Q Consensus 276 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 355 (974)
.+..+... +.+......+|+.+.+.... +......+.++..|+.+.+..+... .....+..+..++.+......+.
T Consensus 214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 214 EFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp CCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC
T ss_pred ecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec
Confidence 66554322 22233344566666664332 2222334556666776666655332 33344556666666655443221
Q ss_pred CcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCccccee
Q 002055 356 QEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTL 435 (974)
Q Consensus 356 ~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i 435 (974)
.. .+..+.. |+.+.+..+ +...-..+|.++++|+.+++.++ ++.+....|.+|++|+.+++..+ ++ .+
T Consensus 290 ~~-------~F~~~~~-L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I 357 (394)
T 4fs7_A 290 EK-------TFYGCSS-LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KI 357 (394)
T ss_dssp TT-------TTTTCTT-CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EE
T ss_pred cc-------ccccccc-ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Ee
Confidence 10 1222222 444444332 22222234555555555555432 43333445555555555555444 32 44
Q ss_pred chhhhcCCCCCcEEEcC
Q 002055 436 SEIHFVNLTKLSVFLVG 452 (974)
Q Consensus 436 ~~~~~~~l~~L~~L~l~ 452 (974)
....|.+|++|+.+.+.
T Consensus 358 ~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 358 GANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTTBTTCTTCCEEEEE
T ss_pred hHHHhhCCCCCCEEEEC
Confidence 44455555555555554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.6e-13 Score=152.43 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=38.2
Q ss_pred eeEEEeccccceec----CCcccccccCCCEEEccCceeeee----ccccccccCCCCEEECCCCcccccCCcccc
Q 002055 784 VRIIDVSKNFFSGT----LPIGLTNLKALQSLNLSYNIFTGR----IPETIGAMRSLESIDFSVNKFTGEIPQSMS 851 (974)
Q Consensus 784 l~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~ 851 (974)
|+.|||++|++++. ++..+...+.|+.|+|++|.|++. ++..+...++|++|||++|.++..-...+.
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 35666666666532 244455556666666666666542 333344456666666666666654444443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=3.7e-11 Score=117.62 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=80.9
Q ss_pred cccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccC
Q 002055 113 KVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLS 192 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 192 (974)
.+|..+. ++|++|+|++|.|++. .|..+..+++|++|+|++|++++..+..|.++++|++|+|++|+++.++...|.
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 99 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCccCC--CCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhc
Confidence 4555553 7889999999999886 677888999999999999999987777788999999999999999988888888
Q ss_pred CCCCCCeecCccccCCCc
Q 002055 193 GLSFLEHLDFSYVNLSKA 210 (974)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~ 210 (974)
.+++|++|++++|.+...
T Consensus 100 ~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 100 NLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCTTCCEEECCSSCBCTT
T ss_pred CCCCCCEEEeCCCCCCCC
Confidence 899999999998887755
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.3e-10 Score=114.07 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=82.7
Q ss_pred cccccCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccc
Q 002055 111 VGKVNPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGW 190 (974)
Q Consensus 111 ~~~l~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~ 190 (974)
.+.+|..+. ++|++|+|++|.+++. .|..++.+++|++|+|++|++++..+..|.++++|++|+|++|+++.++...
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHH
Confidence 356676664 7899999999999885 6778889999999999999998776677889999999999999999888888
Q ss_pred cCCCCCCCeecCccccCCCcc
Q 002055 191 LSGLSFLEHLDFSYVNLSKAS 211 (974)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~ 211 (974)
|..+++|++|++++|.+....
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTB
T ss_pred hccccCCCEEEeCCCCccccc
Confidence 888999999999988887654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=4.7e-11 Score=132.08 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=62.9
Q ss_pred eEEEecc-ccceecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeeccc
Q 002055 785 RIIDVSK-NFFSGTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 863 (974)
Q Consensus 785 ~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~ 863 (974)
+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |++|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5677775 777776667777788888888888888877777777888888888888888765555555555 78888888
Q ss_pred CeeeecC
Q 002055 864 NYLTGKI 870 (974)
Q Consensus 864 N~l~g~i 870 (974)
|++.+..
T Consensus 113 N~~~c~c 119 (347)
T 2ifg_A 113 NPLHCSC 119 (347)
T ss_dssp SCCCCCG
T ss_pred CCccCCC
Confidence 8776654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=3.2e-12 Score=141.83 Aligned_cols=187 Identities=20% Similarity=0.182 Sum_probs=87.2
Q ss_pred CCCcEEEcCCCCCCCCCCCCCc-----CCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEccCcccccCCCccc-----
Q 002055 221 PSLVELDLSNCQLHIFPPLPVA-----NFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNLGYNNFHGPIPEGL----- 290 (974)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l----- 290 (974)
+.|++|++++|.++......+. ..++|++|+|++|.+++.........+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555666666655543322221 124566666666665432212222234456666666665543222222
Q ss_pred CCCCCCCEEEcCCCCCCC----CchhhhhcCCCCCEEECcCCCCCCC----chHhhhcCCCCcEEEccCCCCCCcchhhh
Q 002055 291 QSLTSLKHLDLSFNHFNS----SIPNLLCRLTHLEHLSLSHNSLEGR----IPRSMARLCNLKRLYLSGAKLNQEISEIL 362 (974)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 362 (974)
...++|++|+|++|.++. .++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-- 229 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-- 229 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH--
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH--
Confidence 234556666666665543 1223334555566666666655432 133344455555555555555432221
Q ss_pred hhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCC---C--CCCEEE--ccCCccc
Q 002055 363 DIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRL---S--SLRVLQ--LYRNKLH 432 (974)
Q Consensus 363 ~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~--~L~~L~--L~~n~l~ 432 (974)
.++..+...++|++|+|++|.|++.....+..+ . .|+.+. +..+.+.
T Consensus 230 -----------------------~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 -----------------------ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp -----------------------HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred -----------------------HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 122233445667777777776665433333222 1 156666 5555554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=4.3e-10 Score=124.33 Aligned_cols=95 Identities=24% Similarity=0.241 Sum_probs=81.7
Q ss_pred cccCcCcCCCCCCEEECCC-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCcccc
Q 002055 113 KVNPSLLDLKHLSYLDLSF-NDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWL 191 (974)
Q Consensus 113 ~l~~~l~~l~~L~~L~Ls~-n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l 191 (974)
.+|. +..+++|++|+|++ |.++++ .+..|+.+++|++|+|++|++++..|..|.++++|++|+|++|+++.++...|
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 4777 88999999999996 999875 55778999999999999999999888899999999999999999998888777
Q ss_pred CCCCCCCeecCccccCCCc
Q 002055 192 SGLSFLEHLDFSYVNLSKA 210 (974)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~ 210 (974)
..++ |+.|+|.+|.+...
T Consensus 101 ~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSCC-CCEEECCSSCCCCC
T ss_pred ccCC-ceEEEeeCCCccCC
Confidence 7766 88888888877654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=1.5e-08 Score=113.83 Aligned_cols=90 Identities=8% Similarity=0.090 Sum_probs=55.9
Q ss_pred CCCCccccCCCC-CCCEEEcCCCCccccCccccCCCCCCCeecCcccc---CCCcchhHHhhcCCCCCcEEEcCCCCCCC
Q 002055 160 VGMIPHQLGNLS-SLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSYVN---LSKASDWLLVTHMLPSLVELDLSNCQLHI 235 (974)
Q Consensus 160 ~~~~p~~~~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (974)
+.....+|.+++ .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+. ++.+...++ ..+.+|+.+.+.. .++.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF--~~c~~L~~i~~~~-~~~~ 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF--MFCSELTDIPILD-SVTE 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT--TTCTTCCBCGGGT-TCSE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc--hhcccceeeccCC-ccce
Confidence 334456788774 5999999754 888888999999999999887764 333333222 3445555554433 2444
Q ss_pred CCCCCCcCCCCCCEEeCC
Q 002055 236 FPPLPVANFSTLTTLDLS 253 (974)
Q Consensus 236 ~~~~~l~~l~~L~~L~Ls 253 (974)
+...+|..+.+|+.+.+.
T Consensus 128 I~~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIP 145 (394)
T ss_dssp ECTTTTTTCTTCCEEECC
T ss_pred ehhhhhhhhccccccccc
Confidence 444555555555555554
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=2.3e-08 Score=112.34 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=71.0
Q ss_pred hhhcCCCCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccC
Q 002055 337 SMARLCNLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFG 416 (974)
Q Consensus 337 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 416 (974)
.|..+..|+.+.+..+... +.. ..+..++. |+.+.+.. .+.......|.++.+|+.+++..+ ++.+....|.
T Consensus 260 aF~~c~~L~~i~lp~~~~~--I~~---~aF~~c~~-L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS--IGT---GAFMNCPA-LQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE--ECT---TTTTTCTT-CCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eeeecccccEEecccccce--ecC---cccccccc-cccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 4555556666655443211 111 02223333 55555542 233333345777888888888654 5555556788
Q ss_pred CCCCCCEEEccCCcccceechhhhcCCCCCcEEEcCCccccccccCCCCCcccceeEeccCC
Q 002055 417 RLSSLRVLQLYRNKLHGTLSEIHFVNLTKLSVFLVGENTLTLKVRRDWIPPFQLIELGLRSC 478 (974)
Q Consensus 417 ~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 478 (974)
+|++|+.+.+..+ ++ .+....|.+|++|+.+++.++.... ..+.....|+.+.+..+
T Consensus 332 ~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 8888888888654 43 5666688888888888888765432 23445556666666544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=4.2e-09 Score=115.59 Aligned_cols=83 Identities=12% Similarity=0.255 Sum_probs=49.1
Q ss_pred cceeeEEEeccccceecCCcccc---cccCCCEEEccCceeeee----ccccccccCCCCEEECCCCcccccCCccccC-
Q 002055 781 LNLVRIIDVSKNFFSGTLPIGLT---NLKALQSLNLSYNIFTGR----IPETIGAMRSLESIDFSVNKFTGEIPQSMSS- 852 (974)
Q Consensus 781 l~~l~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~- 852 (974)
++.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|||++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34557777777777654433332 466777777777777653 4455556677777777777766443333332
Q ss_pred CCCCCeeecccCe
Q 002055 853 LTFLNHLNLSNNY 865 (974)
Q Consensus 853 l~~L~~L~ls~N~ 865 (974)
+ ...++++.|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2445666654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=4.4e-09 Score=115.45 Aligned_cols=211 Identities=14% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCCcEEECcCCcccc-cc---chhhHHhhhcCCccccccccccccc---------ccCCcccccCCCCCeeeCCCccccc
Q 002055 561 SNLIGLDLSGNSFSG-SI---FHFLCYTINAGMKLQFLFLDRNILQ---------GNLPDCWMSYQNLMMLDLSNNKFIG 627 (974)
Q Consensus 561 ~~L~~L~Ls~n~l~~-~~---~~~~~~~l~~~~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~~ 627 (974)
.+++.|.+....+.+ .. ...++..+..+++|+.|.+.+.... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777777655442 11 1122333455677777777554221 112233445566666666665211
Q ss_pred cCCccccCCCCccEEEccCCcccccCCcccc--cCCCCCeEeccCC--cccccCchhHHhhhhhhhhhhccCCccccccC
Q 002055 628 NLPTSFGSLSSLVSLHLRKNRLSGTMPISLK--NCTSLMTLDVGEN--EFFGNIPSWFGEMFSIMVFLILRSNYFHGLLP 703 (974)
Q Consensus 628 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p 703 (974)
.++. +. +++|++|+|..|.+.......+. .+++|+.|+|+.+ ...+... ...+ .
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~------~~~l--------------~ 243 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD------MNVF--------------R 243 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC------GGGT--------------G
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh------HHHH--------------H
Confidence 2222 22 55666666666655433222332 4566666665421 1111000 0000 0
Q ss_pred ccc--cCCCCCcEEEccCCcCCCCCChhhcccccccccCCCccCccccccCCCccccccccceeeEEEEecccchhhhcc
Q 002055 704 TKL--CDLAFLQILDLADNNLSGTLPNCIHNLTAMATVNPFTGNAIKYSIPLNSTYALGSVTEQALVVMKGVAADYSEIL 781 (974)
Q Consensus 704 ~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 781 (974)
..+ ..+++|+.|++++|.+.+..+..+.... .+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~---------------------------------------------~~ 278 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD---------------------------------------------IL 278 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS---------------------------------------------SG
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc---------------------------------------------cC
Confidence 111 3478999999999988754443332211 13
Q ss_pred ceeeEEEeccccceec----CCcccccccCCCEEEccCceeeeeccccccc-cCCCCEEECCCCc
Q 002055 782 NLVRIIDVSKNFFSGT----LPIGLTNLKALQSLNLSYNIFTGRIPETIGA-MRSLESIDFSVNK 841 (974)
Q Consensus 782 ~~l~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-l~~L~~LdLs~N~ 841 (974)
+.|+.||||.|.+++. ++..+.++++|+.|+|++|.++...-..+.. + ...+|+++|+
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4568999999999874 4555577899999999999988654444443 2 3668999987
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.61 E-value=1.8e-06 Score=96.32 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=138.1
Q ss_pred CcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCCCCC
Q 002055 118 LLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFL 197 (974)
Q Consensus 118 l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 197 (974)
+....+|+.+.+.. .++.+ -...|..+.+|+.++|..+ ++.....+|.++ +|+.+.+.. .+..+...+|..+ +|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeCC-CccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence 44456677777754 23332 2345677777777777644 444445566665 566666653 3555666666654 57
Q ss_pred CeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCCCCCcCCCCCCEEeCCCCCCCCCCChhhhcCCCCCcEEEc
Q 002055 198 EHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPPLPVANFSTLTTLDLSHNQFDNSFVPSWVFGLSHLLFLNL 277 (974)
Q Consensus 198 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 277 (974)
+.+++..+ +..+....+ . ..+|+...+.. .++.+....+..+..++...+..+...... ..... .
T Consensus 116 ~~i~lp~~-~~~i~~~~F--~-~~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~-~~~~~-~-------- 180 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIF--Y-NSSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVA-ENYVL-Y-------- 180 (379)
T ss_dssp SEEECCTT-CCEECTTTT--T-TCCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEE-ETTEE-E--------
T ss_pred ccccCCCc-ccccccccc--c-cceeeeeeccc-eeeccccchhcccccccccccccccceeec-cccee-c--------
Confidence 77766543 222222222 1 12344444332 244444455556666666555443221100 00000 0
Q ss_pred cCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCCCCcEEEccCCCCCCc
Q 002055 278 GYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLCNLKRLYLSGAKLNQE 357 (974)
Q Consensus 278 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 357 (974)
+ ........+.....+..+.+..... ......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.
T Consensus 181 --~-~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~- 253 (379)
T 4h09_A 181 --N-KNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS- 253 (379)
T ss_dssp --E-TTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-
T ss_pred --c-cccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-
Confidence 0 0000111122233333333322211 112223334444444444332 12122233444444444444332 111
Q ss_pred chhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCCEEEccCCcccceech
Q 002055 358 ISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLRVLQLYRNKLHGTLSE 437 (974)
Q Consensus 358 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~ 437 (974)
+.. ..+..... ++.+.+..+ +.......|..+++|+.+.+.++.++.+....|.++.+|+.+.+..+ ++ .|..
T Consensus 254 I~~---~aF~~~~~-l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~ 326 (379)
T 4h09_A 254 IGS---FLLQNCTA-LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQV 326 (379)
T ss_dssp ECT---TTTTTCTT-CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred eCc---cccceeeh-hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHH
Confidence 100 01111222 333333221 11112234666777777777776666655666777777777777544 33 5556
Q ss_pred hhhcCCCCCcEEEcCC
Q 002055 438 IHFVNLTKLSVFLVGE 453 (974)
Q Consensus 438 ~~~~~l~~L~~L~l~~ 453 (974)
..|.+|++|+.+.+..
T Consensus 327 ~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 327 YAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCCCEEEECC
Confidence 6677777777666644
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=1.9e-06 Score=96.13 Aligned_cols=285 Identities=10% Similarity=0.015 Sum_probs=153.7
Q ss_pred cCcCcCCCCCCEEECCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCCccccCccccCCC
Q 002055 115 NPSLLDLKHLSYLDLSFNDFQGVPIPRFIGSMGNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGL 194 (974)
Q Consensus 115 ~~~l~~l~~L~~L~Ls~n~i~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l 194 (974)
..+|.++.+|+.++|..+ ++.+ -...|..+ +|+.+.+..+ +......+|.+. +|+.+.+..+ +..+...+|.++
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~ 135 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS 135 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccc
Confidence 357899999999999754 5543 33456666 6888887654 443444566654 8999999765 556666777766
Q ss_pred CCCCeecCccccCCCcchhHHhhcCCCCCcEEEcCCCCCCCCCC------------CCCcCCCCCCEEeCCCCCCCCCCC
Q 002055 195 SFLEHLDFSYVNLSKASDWLLVTHMLPSLVELDLSNCQLHIFPP------------LPVANFSTLTTLDLSHNQFDNSFV 262 (974)
Q Consensus 195 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~l~~l~~L~~L~Ls~n~l~~~~~ 262 (974)
+|+...+..+ ++.+.... ...+..++...+..+....... ..+.....+....+...... ..
T Consensus 136 -~l~~~~~~~~-v~~i~~~~--f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~ 209 (379)
T 4h09_A 136 -SVKRIVIPKS-VTTIKDGI--GYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT--VT 209 (379)
T ss_dssp -CCCEEEECTT-CCEECSCT--TTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE--EC
T ss_pred -eeeeeeccce-eeccccch--hcccccccccccccccceeecccceecccccceeccccccccccccccccceeE--Ee
Confidence 4555555432 23332222 2456777777776544321111 11222333333333222110 01
Q ss_pred hhhhcCCCCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCCCCCCchhhhhcCCCCCEEECcCCCCCCCchHhhhcCC
Q 002055 263 PSWVFGLSHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNHFNSSIPNLLCRLTHLEHLSLSHNSLEGRIPRSMARLC 342 (974)
Q Consensus 263 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 342 (974)
...+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|..++
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 223334445555554432 22122334445555555555433 22222334444555555554332 2212223344444
Q ss_pred CCcEEEccCCCCCCcchhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEeccCccCCCCcccccCCCCCCC
Q 002055 343 NLKRLYLSGAKLNQEISEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDLSNNSIVGLVPQSFGRLSSLR 422 (974)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 422 (974)
+ |+.+.+.++.+...-...|.++.+|+.+++..+ ++.+....|.+|++|+
T Consensus 287 ~-----------------------------L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 287 N-----------------------------LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp T-----------------------------CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred c-----------------------------cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 4 455555444444334456788888999888654 5555567888999999
Q ss_pred EEEccCCcccceechhhhcCCCCC
Q 002055 423 VLQLYRNKLHGTLSEIHFVNLTKL 446 (974)
Q Consensus 423 ~L~L~~n~l~~~i~~~~~~~l~~L 446 (974)
.+.+..+ ++ .|....|.++..+
T Consensus 337 ~i~ip~~-v~-~I~~~aF~~c~~~ 358 (379)
T 4h09_A 337 TISYPKS-IT-LIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCTT-CC-EECTTTTTTSSCC
T ss_pred EEEECCc-cC-EEchhHhhCCCCC
Confidence 9888655 43 5666667766433
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=3.7e-08 Score=102.30 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=31.4
Q ss_pred cccCCCEEEccCceeee--eccccccccCCCCEEECCCCcccccCCccccCCC--CCCeeecccCeeeecCC
Q 002055 804 NLKALQSLNLSYNIFTG--RIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLT--FLNHLNLSNNYLTGKIP 871 (974)
Q Consensus 804 ~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~--~L~~L~ls~N~l~g~iP 871 (974)
++++|+.|+||+|+|++ .+|..++.+++|+.||||+|++++. ..+..+. .|++|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34445555555555554 3334444555555555555555543 2222222 45555555555555444
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=1.1e-07 Score=98.77 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=68.0
Q ss_pred hccceeeEEEecccccee--cCCcccccccCCCEEEccCceeeeeccccccccC--CCCEEECCCCcccccCCc------
Q 002055 779 EILNLVRIIDVSKNFFSG--TLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMR--SLESIDFSVNKFTGEIPQ------ 848 (974)
Q Consensus 779 ~~l~~l~~LdLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~l~g~iP~------ 848 (974)
..++.|+.||||+|+|++ .+|..++.+++|+.|+|++|+|++. +.++.+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999999998 6777888999999999999999965 4456666 999999999999998873
Q ss_pred -cccCCCCCCeee
Q 002055 849 -SMSSLTFLNHLN 860 (974)
Q Consensus 849 -~l~~l~~L~~L~ 860 (974)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 366788888876
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=1.6e-07 Score=92.79 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCcEEECcCC-ccccccchhhHHhhhcCCccccccccccccccc----CCcccccCCCCCeeeCCCcccccc----CCc
Q 002055 561 SNLIGLDLSGN-SFSGSIFHFLCYTINAGMKLQFLFLDRNILQGN----LPDCWMSYQNLMMLDLSNNKFIGN----LPT 631 (974)
Q Consensus 561 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 631 (974)
++|++|++++| .+...-...++..+...++|++|+|++|.+... +...+...++|++|+|++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45666677776 666544455556666667777777777777542 334455566777777777777643 344
Q ss_pred cccCCCCccEEEc--cCCccccc----CCcccccCCCCCeEeccCCccc
Q 002055 632 SFGSLSSLVSLHL--RKNRLSGT----MPISLKNCTSLMTLDVGENEFF 674 (974)
Q Consensus 632 ~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 674 (974)
.+...++|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5566677778877 67777643 3344556677888888777763
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=1e-06 Score=87.07 Aligned_cols=120 Identities=11% Similarity=0.049 Sum_probs=61.9
Q ss_pred cccCCCCCCCEEEcCCC-CCCCC----chhhhhcCCCCCEEECcCCCCCCC----chHhhhcCCCCcEEEccCCCCCCcc
Q 002055 288 EGLQSLTSLKHLDLSFN-HFNSS----IPNLLCRLTHLEHLSLSHNSLEGR----IPRSMARLCNLKRLYLSGAKLNQEI 358 (974)
Q Consensus 288 ~~l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~ 358 (974)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777776 65532 223344456666666666666532 2233444455666666665554332
Q ss_pred hhhhhhhcccCCCCCceeeCCCCCCcccccccccCCCCCCEEec--cCccCCCCc----ccccCCCCCCCEEEccCCccc
Q 002055 359 SEILDIFSGCVPNGLESLVLPNSSIFGHLTDQIGLFKNLDSLDL--SNNSIVGLV----PQSFGRLSSLRVLQLYRNKLH 432 (974)
Q Consensus 359 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L--~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~ 432 (974)
... +...+...++|++|++ ++|.++... ...+...++|++|++++|.+.
T Consensus 110 ~~~-------------------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILA-------------------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH-------------------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-------------------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 221 1223444455666666 556655431 222334456666666666553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.3e-05 Score=76.86 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCcEEEccCcccccCCCcccCCCCCCCEEEcCCCC-CCCCchhhhhcC----CCCCEEECcCCC-CCCCchHhhhcCCC
Q 002055 270 SHLLFLNLGYNNFHGPIPEGLQSLTSLKHLDLSFNH-FNSSIPNLLCRL----THLEHLSLSHNS-LEGRIPRSMARLCN 343 (974)
Q Consensus 270 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 343 (974)
.+|++|++++|.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777776655434456677788888888875 554333445543 368888888875 77655566777888
Q ss_pred CcEEEccCCCC
Q 002055 344 LKRLYLSGAKL 354 (974)
Q Consensus 344 L~~L~L~~n~l 354 (974)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888888763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=7.5e-06 Score=78.56 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCCEEEcCCCC-ccccCccccCCC----CCCCeecCccc
Q 002055 147 GNLKYLNLSGSRFVGMIPHQLGNLSSLQYLVLSRNF-LHLVNFGWLSGL----SFLEHLDFSYV 205 (974)
Q Consensus 147 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l----~~L~~L~Ls~n 205 (974)
.+|++||+++|.++..--..+.++++|++|+|++|. +++.....+..+ ++|++|++++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 467777777777665544555666677777776663 554444434332 23444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00023 Score=69.60 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCcEEECcCC-ccccccchhhHHhhhcCCccccccccccccccc----CCcccccCCCCCeeeCCCcccccc----CCc
Q 002055 561 SNLIGLDLSGN-SFSGSIFHFLCYTINAGMKLQFLFLDRNILQGN----LPDCWMSYQNLMMLDLSNNKFIGN----LPT 631 (974)
Q Consensus 561 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 631 (974)
+.|+.|++++| ++...-...++..+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.|... +-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45777777774 665544455667777777888888888888742 334455667888888888888643 233
Q ss_pred cccCCCCccEEEccCCc---ccc----cCCcccccCCCCCeEeccCCcc
Q 002055 632 SFGSLSSLVSLHLRKNR---LSG----TMPISLKNCTSLMTLDVGENEF 673 (974)
Q Consensus 632 ~~~~l~~L~~L~L~~n~---l~~----~~p~~l~~l~~L~~L~Ls~N~l 673 (974)
.+..-+.|++|+|++|. +.. .+...+..-+.|+.|+++.|..
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 45555678888887653 332 2344566678888888887765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.002 Score=62.88 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=20.9
Q ss_pred hhcCCCCCEEECcCCCCCC----CchHhhhcCCCCcEEEccCCCCCC
Q 002055 314 LCRLTHLEHLSLSHNSLEG----RIPRSMARLCNLKRLYLSGAKLNQ 356 (974)
Q Consensus 314 l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~ 356 (974)
+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|++|.+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3334455555555555542 223334444555555555555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0033 Score=57.36 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=28.1
Q ss_pred EEEeccccce-ecCCcccccccCCCEEEccCceeeeeccccccccCCCCEEECCCCcc
Q 002055 786 IIDVSKNFFS-GTLPIGLTNLKALQSLNLSYNIFTGRIPETIGAMRSLESIDFSVNKF 842 (974)
Q Consensus 786 ~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 842 (974)
.+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 34554332 2455555555555533334445555555555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.28 E-value=0.004 Score=56.76 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=49.7
Q ss_pred CEEEccCceee-eeccccccccCCCCEEECCCCcccccCCccccCCCCCCeeecccCeeeec
Q 002055 809 QSLNLSYNIFT-GRIPETIGAMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGK 869 (974)
Q Consensus 809 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~ 869 (974)
..++.+++.++ ..+|..+. .+|+.|||++|+|+..-+..|..+++|++|+|++|++...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 47899999997 46776543 5799999999999976677788999999999999998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.54 E-value=30 Score=29.07 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=22.5
Q ss_pred CccccCCCCCCCEEEcCCCCccccCccccCCCCCCCeecCcc
Q 002055 163 IPHQLGNLSSLQYLVLSRNFLHLVNFGWLSGLSFLEHLDFSY 204 (974)
Q Consensus 163 ~p~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~ 204 (974)
-...|.++.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3345555556665555433 4555555666666666655544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.12 E-value=42 Score=28.15 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=12.4
Q ss_pred CccccCccccCCCCCCCeecCc
Q 002055 182 FLHLVNFGWLSGLSFLEHLDFS 203 (974)
Q Consensus 182 ~i~~~~~~~l~~l~~L~~L~Ls 203 (974)
.++.+...+|.+|.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQ 28 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcC
Confidence 3455555566666666555543
Done!