Query 002056
Match_columns 974
No_of_seqs 256 out of 1246
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 3E-227 6E-232 1888.4 74.4 918 25-972 22-950 (996)
2 PLN02701 alpha-mannosidase 100.0 2E-178 5E-183 1629.5 89.5 887 26-966 27-1019(1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 3E-161 7E-166 1356.4 55.9 882 25-965 148-1107(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 1E-105 3E-110 995.8 78.5 767 39-922 3-821 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 1.9E-79 4.2E-84 666.3 43.9 698 38-926 279-1018(1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 1E-59 2.2E-64 514.5 24.2 270 41-353 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 7.3E-50 1.6E-54 488.3 29.2 663 41-926 199-895 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 9.9E-41 2.1E-45 393.1 37.9 410 490-959 1-437 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.8 1.3E-21 2.8E-26 170.4 3.2 75 358-432 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 4.1E-20 9E-25 160.5 6.6 74 359-432 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.8 5.3E-21 1.2E-25 235.2 -1.8 358 38-434 2-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.4 7.8E-07 1.7E-11 101.2 10.0 121 74-196 28-195 (360)
13 COG1543 Uncharacterized conser 96.3 0.0086 1.9E-07 67.2 7.1 122 72-195 75-207 (504)
14 COG1449 Alpha-amylase/alpha-ma 95.6 0.65 1.4E-05 56.3 19.2 98 93-192 162-263 (615)
15 PF01522 Polysacc_deac_1: Poly 95.2 0.2 4.3E-06 47.2 11.0 104 75-191 17-122 (123)
16 TIGR03212 uraD_N-term-dom puta 93.8 5.7 0.00012 43.8 19.6 111 74-198 75-187 (297)
17 TIGR02884 spore_pdaA delta-lac 92.4 0.98 2.1E-05 47.8 10.8 101 80-192 54-156 (224)
18 TIGR02764 spore_ybaN_pdaB poly 92.3 1.4 2.9E-05 45.3 11.5 101 79-192 22-124 (191)
19 TIGR03006 pepcterm_polyde poly 90.2 2.7 5.9E-05 45.5 11.6 112 72-195 24-139 (265)
20 TIGR02873 spore_ylxY probable 89.1 3.9 8.4E-05 44.5 11.7 101 78-191 100-202 (268)
21 PRK14582 pgaB outer membrane N 85.1 25 0.00055 43.1 16.5 151 114-319 168-347 (671)
22 PRK14581 hmsF outer membrane N 80.6 9.2 0.0002 46.8 10.5 81 113-196 167-275 (672)
23 PRK15394 4-deoxy-4-formamido-L 72.7 1.6E+02 0.0034 32.6 16.5 80 114-197 92-175 (296)
24 PF07481 DUF1521: Domain of Un 67.4 58 0.0013 31.9 10.0 96 599-711 7-103 (171)
25 PF08672 APC2: Anaphase promot 63.1 8.7 0.00019 31.3 3.2 23 110-132 36-58 (60)
26 PHA03393 odv-e66 occlusion-der 44.3 29 0.00063 42.1 4.9 110 53-183 54-174 (682)
27 PF12395 DUF3658: Protein of u 36.3 62 0.0013 30.0 4.8 69 41-136 40-108 (111)
28 TIGR03826 YvyF flagellar opero 34.7 30 0.00066 33.3 2.5 51 73-130 27-77 (137)
29 PF06044 DRP: Dam-replacing fa 30.5 85 0.0018 33.1 5.0 92 34-132 146-250 (254)
30 TIGR03593 yidC_nterm membrane 26.4 4.6E+02 0.01 29.8 10.9 29 599-627 73-101 (366)
31 PRK10148 hypothetical protein; 26.3 24 0.00053 34.5 0.3 18 164-181 123-140 (147)
32 COG0726 CDA1 Predicted xylanas 25.7 4.4E+02 0.0095 27.7 10.1 115 52-190 65-181 (267)
33 PRK12465 xylose isomerase; Pro 24.0 1.4E+02 0.003 34.2 5.6 65 264-333 86-155 (445)
34 PF14849 YidC_periplas: YidC p 23.5 4.6E+02 0.0099 28.2 9.7 25 602-626 2-26 (270)
35 PF13289 SIR2_2: SIR2-like dom 21.0 4.8E+02 0.011 24.5 8.4 83 93-190 59-141 (143)
36 PF03755 YicC_N: YicC-like fam 20.7 2.3E+02 0.0049 28.1 6.0 61 103-163 39-101 (159)
37 PF10074 DUF2285: Uncharacteri 20.6 18 0.00038 33.3 -1.8 27 103-132 75-101 (106)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-227 Score=1888.42 Aligned_cols=918 Identities=52% Similarity=0.857 Sum_probs=844.0
Q ss_pred eeeEecCCCCCCCCceEEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHH
Q 002056 25 KYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRW 104 (974)
Q Consensus 25 ~~~~~~~~~~~~~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w 104 (974)
.++.|++|+.+.+++++||||||||+|+|||||+||||+|++|.||++.|++|||+||++|.+||+|||+++|++||.+|
T Consensus 22 ~~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rW 101 (996)
T KOG1959|consen 22 SRAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARW 101 (996)
T ss_pred HhhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHH
Confidence 45559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcC--CCCceeeecCCCCCChhhHHH
Q 002056 105 WDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFG--VTPRIGWQIDPFGHSAVQAYL 182 (974)
Q Consensus 105 ~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG--~~p~~~w~~D~FGhs~~~p~l 182 (974)
|.+|++++|+.||+||++|||||+||||||+|||.+||.++|+||+.||+||.++|| .+|++||||||||||+.+|.|
T Consensus 102 W~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAsl 181 (996)
T KOG1959|consen 102 WNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASL 181 (996)
T ss_pred HHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HhhhcCCceEEEeccChhhHHhhhcCCceeEEEecCCCCCCCCceeEeeCCCCCCCCCCCccccccCCCCccccCccccc
Q 002056 183 LGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFD 262 (974)
Q Consensus 183 l~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~ 262 (974)
| ++|||++++|+||||++|+.|..++.|||+|+|++++++.++|||++||.||++| +|||||.+|.+.|++|++.+.+
T Consensus 182 f-AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P-~gfc~dv~c~d~Pi~D~~~~~d 259 (996)
T KOG1959|consen 182 F-AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPP-PGFCFDVLCGDDPIIDGPRSYD 259 (996)
T ss_pred H-HHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCC-CCceeccccCCCCCCCCCCCCC
Confidence 9 9999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCeEEEeeccCCCccchHHHHHHHHHHHHHHhcC---C-CeEEEEcChhhhHHHHHhc
Q 002056 263 YNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD---G-RVNALYSTPSIYTDAKYAS 338 (974)
Q Consensus 263 ~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~---~-~~~i~~sT~~~Yf~~~~~~ 338 (974)
|||++|++.|++.++.++.+|+|||||+|||+||+|.+|..||+||||||+|+|+. + ++++.||||+||++++++.
T Consensus 260 ~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~ 339 (996)
T KOG1959|consen 260 YNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAA 339 (996)
T ss_pred ccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999943 4 7999999999999999999
Q ss_pred CCCCCCccCCcccccccCCCccceeecchhhHHHHHHHhhHHHHHHHHHHHhhccCC--CCCchHHHHHHHHHhcccccc
Q 002056 339 NESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRSE--TGHNTDSLADALAIAQHHDAV 416 (974)
Q Consensus 339 ~~~~p~~~gDf~py~~~~~~yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~~~~~lw~~l~~~QhHDaI 416 (974)
+.+||+++.|||||++++|+||||||||||.+|++.|++++.|++|+||++++++.. ..+.++.|+++|++.||||||
T Consensus 340 ~~Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAV 419 (996)
T KOG1959|consen 340 NQTWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAV 419 (996)
T ss_pred cCcccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999998654 567899999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEc
Q 002056 417 TGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYN 496 (974)
Q Consensus 417 tGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfN 496 (974)
|||+|++|.+||.++|..|+..|+++++.+|+.|.... ..+|++|++||+|+||.++. .++++.|+|||
T Consensus 420 TGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YN 488 (996)
T KOG1959|consen 420 TGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYN 488 (996)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEc
Confidence 99999999999999999999999999999999998753 34799999999999999973 36789999999
Q ss_pred CCCceEEEEEEEEEeCCcEEEEccCCCeEEEEEcCCcccccchhhhhhhhhcCCCCCCCCcEEEEEEeecCCCceEEEEE
Q 002056 497 SLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTI 576 (974)
Q Consensus 497 pL~~~r~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPplG~~~y~i 576 (974)
||+|.++++|+|||..+++.|+|+.|++|++|++|.......+. .+.....|+|+|.|.|||+|+++|.|
T Consensus 489 pLa~~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i 558 (996)
T KOG1959|consen 489 PLAHTVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFI 558 (996)
T ss_pred CCcceeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEE
Confidence 99999999999999999999999999999999999876543321 12345679999999999999999999
Q ss_pred EecCCCCCccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCccEEEEEEEEEEeeccCCCCCCCCCCCc
Q 002056 577 SSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAG 656 (974)
Q Consensus 577 ~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sG 656 (974)
+........+ .+............+.|+|+++++.||.++|.+++|....+|.+.++.|.|.+|.+..|++ +.+.||
T Consensus 559 ~k~~~~~~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n--~~q~Sg 635 (996)
T KOG1959|consen 559 KKVASTERGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDN--DKQASG 635 (996)
T ss_pred eecCcccccc-cccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCc--CCccCc
Confidence 9655432210 0111111122333488999999999998889999999888999999999999999988842 359999
Q ss_pred ceeEecCCCceeecC-CcccEEEEEcccEEEEEEEEcceEEEEEEEecCCCceEEEEEECcccccCCCCcEEEEEEEeec
Q 002056 657 AYIFRPNGTFFIKSE-GQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTL 735 (974)
Q Consensus 657 AYiF~P~~~~~~~~~-~~~~i~v~~Gpl~~ev~~~~~~~i~~~vrLy~~~~~ie~e~~v~~i~~~~~~~~El~~~f~t~i 735 (974)
||+|+| +..++++. ....++|+.|||+.||++.++.|++|++|+|+|.+++||||.|+|||++++.|||++.||.|+|
T Consensus 636 AYiFRp-~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i 714 (996)
T KOG1959|consen 636 AYIFRP-GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEI 714 (996)
T ss_pred ceEecC-CCCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEecccc
Confidence 999999 54444443 3578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEccCCcceeeccccccCCccccCCCCcccceEeeeeeEEEEeCCcceEEEeccccceeeccCCeEEEEEEe-e
Q 002056 736 ETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHR-L 814 (974)
Q Consensus 736 ~~~~~fyTD~ng~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ssl~~G~iElml~R-l 814 (974)
+++++|||||||++|+||.+++|++|..+.++||+||||||++.|||+|+++||+|||||+|||+|++||+||||||| +
T Consensus 715 ~S~g~fYTDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl 794 (996)
T KOG1959|consen 715 SSNGVFYTDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRL 794 (996)
T ss_pred ccCceEEecCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEEeecccCCccccCCeEEEEeeehh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCCcccccccccccccccccCCeEEEeEEEEEeecCCCcc-cccccchhhhcCCCeeeeeccCCCcccCCcccccccC
Q 002056 815 LLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA-KWRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGI 893 (974)
Q Consensus 815 ~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l 893 (974)
+.||+|||||+|||+.++. .||+++|+|++.|++....+ ..+|..++++..|.+.+|++.....+........+.+
T Consensus 795 ~~DD~~Gv~EaLnEt~~~~---~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f 871 (996)
T KOG1959|consen 795 LNDDGRGVGEALNETVYGH---AGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAF 871 (996)
T ss_pred hcccccccchhcccccccc---cceEEeeeEEEEEecccccchhhhhhhhhhcccHHHHHhhcCCCccchhhcCCCcccc
Confidence 9999999999999999862 79999999999999888775 6778889999999999999876644444322222223
Q ss_pred CCCCCCCCceeEEEEEeeCCCcEEEEEecccccCCCCCCCcceeeeccccCCCCCcceEEEcccccccccchhhccCCC
Q 002056 894 DSSYSLPDNVAIITLQELDDGKILLRLAHLYQLGEDNDLSKPTNVELKKLFPRKKIGKVTETSLSANQERTEMEKRDSS 972 (974)
Q Consensus 894 ~~~~~lp~nvhlltl~~~~~~~illRl~~l~~~~~~~~~s~~~~v~l~~lf~~~~~~~~~EtsLt~~~~~~~~~~~~~~ 972 (974)
..+..||.+||||||++|+++.+||||+|+|++|||+++|++++|||.+||..+.|..|+||||+||+++++|++.|++
T Consensus 872 ~~~~~lP~~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvsfnl~~lf~~~~i~~i~EttL~gN~~ls~mkr~k~~ 950 (996)
T KOG1959|consen 872 SGSYDLPQSVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVSFNLRKLFSALDIVEIRETTLDGNQPLSDMKRFKFH 950 (996)
T ss_pred ccccCCCcceeeeecccCCCCceEeeehhhhhcccccccCcceEEEhHHhhcccCeeEEEEeeccCccChhhhhhhccc
Confidence 2245899999999999999999999999999999999999999999999999999999999999999999999665553
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=2.3e-178 Score=1629.48 Aligned_cols=887 Identities=27% Similarity=0.478 Sum_probs=746.6
Q ss_pred eeEecCCCCCCCCceEEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHH
Q 002056 26 YRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWW 105 (974)
Q Consensus 26 ~~~~~~~~~~~~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~ 105 (974)
.|.|+..++. +++++||||||||||+|||||++|||+ +.++.||++||+.|++||+|||+|+|++||++||
T Consensus 27 ~~~y~~~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww 97 (1050)
T PLN02701 27 RVKYRGDEWD-REKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLERWW 97 (1050)
T ss_pred ceeecccccC-CcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHH
Confidence 4568888775 788999999999999999999999997 8999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhh
Q 002056 106 DEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGS 185 (974)
Q Consensus 106 ~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~ 185 (974)
++++|+++++||+||++||||||||||||+|||++|||+|||||++||+|++++||+.|++||+|||||||++||||| +
T Consensus 98 ~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll-~ 176 (1050)
T PLN02701 98 RDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLL-R 176 (1050)
T ss_pred HhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hcCCceEEEeccChhhHHhhhcCCceeEEEecCCCCCCCCceeEeeCCC-CCC-----CCCCCcc--ccccC------CC
Q 002056 186 EVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYE-----PPPGGFY--FEVND------KY 251 (974)
Q Consensus 186 ~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~-~Y~-----~p~~~f~--f~~~~------~~ 251 (974)
+|||++++|+|++|++|..|..++.+||+|+++++.++|++||||+||+ +|+ .||++|| ||..+ ..
T Consensus 177 ~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~~ 256 (1050)
T PLN02701 177 RMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYEL 256 (1050)
T ss_pred hCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCccccccccccccccccccc
Confidence 9999999999999999999999999999999987777799999999994 553 2335666 55442 12
Q ss_pred CccccC-cccccCCHHHHHHHHHHHHHHhhcccCCCeEEEeeccCCCc---cchHHHHHHHHHHHHHHhcCC--CeEEEE
Q 002056 252 PIIQDN-IKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKY---QYARTWFRQLDKFIHYVNMDG--RVNALY 325 (974)
Q Consensus 252 ~~~~~~-~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~---~~a~~~~~~~~~li~~~N~~~--~~~i~~ 325 (974)
||+.++ +.++++|+++|++.|++++++++..|+++++|+|+|+||+| .+|..||+||++||+++|+++ .++++|
T Consensus 257 cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~~ 336 (1050)
T PLN02701 257 CPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVKF 336 (1050)
T ss_pred CcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEEE
Confidence 555444 46888999999999999999999999999999999999999 468899999999999999774 489999
Q ss_pred cChhhhHHHHHhcC----------------CCCCCccCCcccccccCCCccceeecchhhHHHHHHHhhHHHHHHHHHHH
Q 002056 326 STPSIYTDAKYASN----------------ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEF 389 (974)
Q Consensus 326 sT~~~Yf~~~~~~~----------------~~~p~~~gDf~py~~~~~~yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~ 389 (974)
|||++||+++++.. ..||+++||||||+++.++||||||||||.+|+++|.+|++|++||+|++
T Consensus 337 ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L~s 416 (1050)
T PLN02701 337 GTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFS 416 (1050)
T ss_pred CCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998753 57999999999999999999999999999999999999999999999999
Q ss_pred hhc--------cCCC---CCchHHHHHHHHHhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 002056 390 YIG--------RSET---GHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNG 458 (974)
Q Consensus 390 l~~--------~~~~---~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~ 458 (974)
++. ..++ .+.++.+||+|+++|||||||||++++|++||..||.+++..++.+++.+++.|+..... .
T Consensus 417 la~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~~-~ 495 (1050)
T PLN02701 417 FLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRHE-K 495 (1050)
T ss_pred HHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c
Confidence 842 2244 245789999999999999999999999999999999999999999999999999864321 1
Q ss_pred CCCCCccccccc-ccccccCCCccc-ccCCCCeEEEEEEcCCCceEEEEEEEEEeCCcEEEEccCCCeEEEEEcCCcccc
Q 002056 459 CGRSTTRFQQCP-LLNISYCPASEI-DFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAF 536 (974)
Q Consensus 459 ~~~~~~~~~~~~-~ln~s~c~~~~~-~~~~~~~~~vvvfNpL~~~r~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~ 536 (974)
+..+...|+.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|++|++|++|++|.+...
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~~~ 575 (1050)
T PLN02701 496 SDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQHD 575 (1050)
T ss_pred cccccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEecccccc
Confidence 112234577784 468999987752 233456689999999999999999999999999999999999999999886421
Q ss_pred cchhhhhhhhhcCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCcccccc--------------ceecccCCCCce
Q 002056 537 MDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSS--------------IQTFESSDKSTV 602 (974)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPplG~~~y~i~~~~~~~~~~~~s~--------------~~~~~~~~~~~~ 602 (974)
. .......|+|+|.|+||||||++|.|............++ .........+.+
T Consensus 576 ~-------------~~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1050)
T PLN02701 576 G-------------EKLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDTV 642 (1050)
T ss_pred c-------------cccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCCCcE
Confidence 0 0012357999999999999999999986532211000000 000001123458
Q ss_pred EEecceEEEEEeCCCCCeEEEEecCCccEEEEEEEEEEeeccCCCCCCCCCCCcceeEecCCCc-eeecCCcccEEEEEc
Q 002056 603 EVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIKSEGQVPLTVMRG 681 (974)
Q Consensus 603 ~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~-~~~~~~~~~i~v~~G 681 (974)
.|||++++|+||+++|.|++|+++++|++..+.++|.+|.+ +.||||+|+|++.+ ++. .....+.|++|
T Consensus 643 ~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s---------~~SGAYiFrP~~~~~p~~-~~~~~~~v~~G 712 (1050)
T PLN02701 643 EISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS---------QGSGAYLFKPDGEAQPIV-QAGGLVVVSEG 712 (1050)
T ss_pred EEecCeEEEEEcCCCCceeEEEecccCceecceeeeeeecC---------CCCcceEEcCCCCCcccC-CCCceEEEEeC
Confidence 99999999999989999999999999999999999999963 35799999998875 332 22234567899
Q ss_pred ccEEEEEEEE-----cceEEEEEEEecC-----CCceEEEEEECcccccCCCCcEEEEEEEeecCCCCeEEEccCCccee
Q 002056 682 PILDEVHQKI-----NEWIYQVTRLYKG-----KEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFI 751 (974)
Q Consensus 682 pl~~ev~~~~-----~~~i~~~vrLy~~-----~~~ie~e~~v~~i~~~~~~~~El~~~f~t~i~~~~~fyTD~ng~~~i 751 (974)
|++++|++.+ +++++|++|||++ ...||++++||+||. |..|||+++||.|+|+|+++||||+|||||+
T Consensus 713 plv~eV~~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~ 791 (1050)
T PLN02701 713 PLVQEVHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMS 791 (1050)
T ss_pred CEEEEEEEEeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceee
Confidence 9999999976 5789999999998 678999999999997 6789999999999999999999999999999
Q ss_pred eccccccCCccccCCCCcccceEeeeeeEEEEe-CCcceEEEeccccceeeccCCeEEEEEEe-ecCCCCcccccccccc
Q 002056 752 KRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQD-VKKEFSLLVDRALGGSSIVDGEVELMLHR-LLLDDSRGVAEALNET 829 (974)
Q Consensus 752 kR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D-~~~~ltvl~dr~~G~ssl~~G~iElml~R-l~~DD~rGvge~l~e~ 829 (974)
||+ +|+ ++|++||||||++.|||+| ++.||+|+|||++||+|+++|+||||||| |++||+|||||||+|+
T Consensus 792 kR~-----~~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~dn 863 (1050)
T PLN02701 792 RRE-----TYD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDN 863 (1050)
T ss_pred eec-----ccc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCcccccccccc
Confidence 996 343 6999999999999999999 66899999999999999999999999999 9999999999999997
Q ss_pred cccccccCCeEEEeEEEEEeecCCCccc------------ccccchhhhcCCCeeeeeccCCC-cccCCcccccccCCCC
Q 002056 830 DCVLDECKGLTIQGKYYFRIDTIGDGAK------------WRRTFGQEIYSPPLLAFTEEDGD-SWRNSHVTTFSGIDSS 896 (974)
Q Consensus 830 ~~~~~~~~gl~~~~~~~l~~~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 896 (974)
. ++.++|+|++|+...... ..+..+..|++|+++|++..... ........+|++|.+
T Consensus 864 k---------~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~- 933 (1050)
T PLN02701 864 R---------PMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQDTSFAPLAK- 933 (1050)
T ss_pred c---------cccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCccccccccccccccccccC-
Confidence 4 578899999996653210 12345688999999888543221 111112267888875
Q ss_pred CCCCCceeEEEEEeeCCC-------------cEEEEEecccccCC--CCCCCcc-e-eeeccccCCCCCcceEEEccccc
Q 002056 897 YSLPDNVAIITLQELDDG-------------KILLRLAHLYQLGE--DNDLSKP-T-NVELKKLFPRKKIGKVTETSLSA 959 (974)
Q Consensus 897 ~~lp~nvhlltl~~~~~~-------------~illRl~~l~~~~~--~~~~s~~-~-~v~l~~lf~~~~~~~~~EtsLt~ 959 (974)
+||||+||+|||++.+. .||+|.+-.+.... +..|+.. . .|+|.+||.++.+..+++||||.
T Consensus 934 -~lpcD~hlv~lrt~~~~~~~~~~~~~~~~~~~l~r~~~d~~~~~~~~~~c~~~~~~~~~~~~lf~~l~~~~~~~tsl~~ 1012 (1050)
T PLN02701 934 -PLPCDLHIVNFKVPRPSKYSQQEAEDPRFGLLLQRRGWDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNL 1012 (1050)
T ss_pred -CCCCcEEEEEeeccCCcccccccCCCccEEEEEEecccCcccccCCCccCcccCCcccchhhhhcccceeeeecccccc
Confidence 99999999999976532 27888773222211 1222322 2 39999999999999999999999
Q ss_pred ccccchh
Q 002056 960 NQERTEM 966 (974)
Q Consensus 960 ~~~~~~~ 966 (974)
.++..+|
T Consensus 1013 ~~~~~~~ 1019 (1050)
T PLN02701 1013 LHDDAEM 1019 (1050)
T ss_pred cccchhh
Confidence 9976443
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-161 Score=1356.41 Aligned_cols=882 Identities=29% Similarity=0.468 Sum_probs=730.8
Q ss_pred eeeEecCCCCCCCCceEEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHH
Q 002056 25 KYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRW 104 (974)
Q Consensus 25 ~~~~~~~~~~~~~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w 104 (974)
-.|.|++..+....+++|+||||||+|+||++||++||+ ...++||++++..|.++|++||+|+|++||.+|
T Consensus 148 ~~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~w 219 (1129)
T KOG1958|consen 148 FKITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLERW 219 (1129)
T ss_pred ceeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHHHh
Confidence 456698888877777999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHh
Q 002056 105 WDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLG 184 (974)
Q Consensus 105 ~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~ 184 (974)
|+.++|+.+++||+||++||||||+|||||||||.+||.++|+|+++||+||..++|++|+++|.|||||||++||+||
T Consensus 220 w~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL- 298 (1129)
T KOG1958|consen 220 WDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLL- 298 (1129)
T ss_pred hhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEeccChhhHHhhhcCCceeEEEecCCCCCCCCceeEeeCCC-CCCCC---------CCCccccccC---CC
Q 002056 185 SEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPP---------PGGFYFEVND---KY 251 (974)
Q Consensus 185 ~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~-~Y~~p---------~~~f~f~~~~---~~ 251 (974)
+++||++++|+|+||..|+.++.+|++||+||+.|+..+.++||||+||+ +|+.| +|+|||.+.+ ..
T Consensus 299 ~~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~ 378 (1129)
T KOG1958|consen 299 RRAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCE 378 (1129)
T ss_pred hhcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcC
Confidence 89999999999999999999999999999999999988889999999998 78765 2689999874 24
Q ss_pred Ccc-ccCcccccCCHHHHHHHHHHHHHHhhcccCCCeEEEeeccCCCccchHHH---HHHHHHHHHHHhcCC--CeEEEE
Q 002056 252 PII-QDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTW---FRQLDKFIHYVNMDG--RVNALY 325 (974)
Q Consensus 252 ~~~-~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~---~~~~~~li~~~N~~~--~~~i~~ 325 (974)
||| ..+..|++.||++||+.+++||+++++.|++|.+|+|.||||+|..-.+| |.|+.+|+++||+.+ .+.++|
T Consensus 379 Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqF 458 (1129)
T KOG1958|consen 379 CPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQF 458 (1129)
T ss_pred CCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeeec
Confidence 666 55558999999999999999999999999999999999999999887665 999999999999865 688999
Q ss_pred cChhhhHHHHHhc------C-CCCCCccCCcccccccCCCccceeecchhhHHHHHHHhhHHHHHHHHHHHhhc------
Q 002056 326 STPSIYTDAKYAS------N-ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG------ 392 (974)
Q Consensus 326 sT~~~Yf~~~~~~------~-~~~p~~~gDf~py~~~~~~yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~l~~------ 392 (974)
+|++|||+++++. + ..||+++||||+|+|+.++||||||||||.+|++.|.+|++||+||++.+++.
T Consensus 459 GTlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r~ 538 (1129)
T KOG1958|consen 459 GTLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHRV 538 (1129)
T ss_pred CCHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999999999865 1 35899999999999999999999999999999999999999999999998642
Q ss_pred -c--CCCC---CchHHHHHHHHHhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccc
Q 002056 393 -R--SETG---HNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRF 466 (974)
Q Consensus 393 -~--~~~~---~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 466 (974)
. ..+. ..+..+||+|+++|||||||||||++|+.||..||..++..++.++.+++..|+......+...+...+
T Consensus 539 ~~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~~ 618 (1129)
T KOG1958|consen 539 GLAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSHSF 618 (1129)
T ss_pred hhhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCc
Confidence 1 1122 346789999999999999999999999999999999999999999999999998866422222222111
Q ss_pred cccccc--ccccCCC-cccccCCCCeEEEEEEcCCCceEEEEEEEEEeCCcEEEEccCCCeEEEEEcCCcccccchhhhh
Q 002056 467 QQCPLL--NISYCPA-SEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYY 543 (974)
Q Consensus 467 ~~~~~l--n~s~c~~-~~~~~~~~~~~~vvvfNpL~~~r~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~ 543 (974)
-+.... +.+..|. +-..+ .+.+..|++||||+++|.++|.|.|+.+.|.|.+..|.+|++||.|+|......
T Consensus 619 ~emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk---- 693 (1129)
T KOG1958|consen 619 IEMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK---- 693 (1129)
T ss_pred eehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc----
Confidence 111111 1111121 00112 233468999999999999999999999999999999999999999999632110
Q ss_pred hhhhcCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCccccc---cce-----ecc--cCCCCceEEecceEEEEE
Q 002056 544 VRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRS---SIQ-----TFE--SSDKSTVEVGQGNLKLIF 613 (974)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~f~a~vPplG~~~y~i~~~~~~~~~~~~s---~~~-----~~~--~~~~~~~~ieN~~~~v~~ 613 (974)
......|+|+|.+.|||||..+|++..+.........+ +++ ... ........++|++..|.|
T Consensus 694 --------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~f 765 (1129)
T KOG1958|consen 694 --------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELRF 765 (1129)
T ss_pred --------eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeEEe
Confidence 01124799999999999999999998763321111110 010 000 111223589999999999
Q ss_pred eCCCCCeEEEEecCCccEEEEEEEEEEeeccCCCCCCCCCCCcceeEecCCCc-eeecCCcccEEEEEcccEEEEEEEEc
Q 002056 614 SSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIKSEGQVPLTVMRGPILDEVHQKIN 692 (974)
Q Consensus 614 ~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~-~~~~~~~~~i~v~~Gpl~~ev~~~~~ 692 (974)
++++|.|+++..+.+++...+...|..|.+..+ +..||||+|.|+|++ ++..-....|.+ +|+|+++|.+...
T Consensus 766 d~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~-----~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~ 839 (1129)
T KOG1958|consen 766 DPETGTIKSINSLSDNKHFESQVSFSNYGERIS-----GDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLK 839 (1129)
T ss_pred ccccchhhhhhhcccCCCcccceeecccccccc-----CCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccccc
Confidence 999999999988888888888888988865543 567999999999985 544334456666 9999999998763
Q ss_pred c---eEEEEEEEecCCCceEEEEEECcccccCCCCcEEEEEEEeecCCCCeEEEccCCcceeeccccccCCccccCCCCc
Q 002056 693 E---WIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPV 769 (974)
Q Consensus 693 ~---~i~~~vrLy~~~~~ie~e~~v~~i~~~~~~~~El~~~f~t~i~~~~~fyTD~ng~~~ikR~~~~r~~w~~~~~~pv 769 (974)
+ ...|.+|+|.|. .+|++..|+ +.+..+.|++|||.|+++++..||||+||+||+||.+. .+.|+
T Consensus 840 ~v~~~~~~~~~~~~G~-~vei~~~vd---i~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~KlPl 907 (1129)
T KOG1958|consen 840 NVLHRLSQNVRGYSGE-EVEISNSVD---IRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKLPL 907 (1129)
T ss_pred hHHHhchhheeccCCc-ceeeeceee---cccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccCcc
Confidence 2 233788999887 678877764 55568999999999999999999999999999999765 47999
Q ss_pred ccceEeeeeeEEEEeCCcceEEEeccccceeeccCCeEEEEEEe-ecCCCCcccccccccccccccccCCeEEEeEEEEE
Q 002056 770 AGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHR-LLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFR 848 (974)
Q Consensus 770 ~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ssl~~G~iElml~R-l~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~ 848 (974)
++|||||++++||+|.+.||++++.+++|++|+.+|+||||++| |.+||+||+|+++.|+ .++..+|+|+
T Consensus 908 QaNyYPmpt~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DN---------k~t~~~frlv 978 (1129)
T KOG1958|consen 908 QANYYPMPTAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDN---------KPTDMKFRLV 978 (1129)
T ss_pred cceeecccceeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCcccccccccc---------chhhheeeee
Confidence 99999999999999999999999999999999999999999999 9999999999999876 3577899999
Q ss_pred eecCCCccc------------ccccchhhhcCCCeeeeeccCCCcccCCcccccccCCCCCCCCCceeEEEEEeeCCC--
Q 002056 849 IDTIGDGAK------------WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDDG-- 914 (974)
Q Consensus 849 ~~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~-- 914 (974)
+++...... ..+...+.+++|+..++.+... +... ...|.++.. +|||++|++|++++.+.
T Consensus 979 ~e~~~s~~~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~pk--~i~~-~g~~~~~~~--~lpcDl~lvt~rtl~~~~~ 1053 (1129)
T KOG1958|consen 979 LESLNSAQDPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEPK--KIED-QGIFEPLNL--SLPCDLHLVTFRTLESSKA 1053 (1129)
T ss_pred ecccccccCchhcCCCCChhhhhhcccceecCCchhhcccCCC--Chhh-ccccccccC--CCccceeEEEeeeccCccc
Confidence 998765321 1134567889999888743321 1111 334666654 99999999999999754
Q ss_pred ------cEEEEEecccccC--CCCCCCcceeeeccccCCCCCcceEEEcccccccccch
Q 002056 915 ------KILLRLAHLYQLG--EDNDLSKPTNVELKKLFPRKKIGKVTETSLSANQERTE 965 (974)
Q Consensus 915 ------~illRl~~l~~~~--~~~~~s~~~~v~l~~lf~~~~~~~~~EtsLt~~~~~~~ 965 (974)
.||+|-+ .+|+ ....+. ..++++.+|+.. +.+++.|+|++.+....
T Consensus 1054 ~~~~~~lil~R~~--~~c~~~~~g~c~-~~ki~~~~ll~~--~~~v~~tsLs~l~~~~~ 1107 (1129)
T KOG1958|consen 1054 AEKRAALILHRHA--TDCRSQKKGTCG-QLKISVMDLLIK--AKSVKKTSLSLLQEVGG 1107 (1129)
T ss_pred ccccceeeeeecc--cccccccccccc-cccCcHHHHHHH--HHhhchhhHHhhhhccc
Confidence 3777754 4443 222223 558889999987 88999999999887543
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=1.3e-105 Score=995.82 Aligned_cols=767 Identities=15% Similarity=0.191 Sum_probs=583.4
Q ss_pred ceEEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEE-echhHHHHHHHhcCHHHHHHHH
Q 002056 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIY-VEQAFFQRWWDEQSEAMQHEVK 117 (974)
Q Consensus 39 ~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~-~e~~~~~~w~~~~~p~~~~~vk 117 (974)
+++||+|||||||+|||||++++.. ++.+++++|++.|+++|+++|.+ ++|..+.+||.+.+|+++++||
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ik 73 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKERVK 73 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHHHH
Confidence 4789999999999999999999874 88899999999999999999764 3444444555589999999999
Q ss_pred HHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCceEEEecc
Q 002056 118 QLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRI 197 (974)
Q Consensus 118 ~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R~ 197 (974)
+||++||| ++||||||+||+++||||+||||++|++|+ ++||..|++||+|||||||++||||| ++|||+++++||+
T Consensus 74 ~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~~~wr~ 150 (875)
T PRK09819 74 KLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRTLFWRG 150 (875)
T ss_pred HHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeEEEEec
Confidence 99999999 666666999999999999999999999998 79999999999999999999999999 9999999999997
Q ss_pred ChhhHHhhhcCCceeEEEecCCCCCCCCceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHHHHHHH
Q 002056 198 DYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAI 277 (974)
Q Consensus 198 ~~~~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~ 277 (974)
..+. ...+..+|+|+|+| ||+||||++|.+|+.+ ..+ | ....+++++++.+++.++
T Consensus 151 ~~~~----~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g-~~~---------~------~~~~~~~~~~~~~~~~~~ 206 (875)
T PRK09819 151 VSDR----HGTDKTEFLWQSDD----GSEVLAQQLPLGYAIG-KYL---------P------EDEEELKKRLDEYFGVLE 206 (875)
T ss_pred cccc----ccCCCceEEEECCC----CCeEEEEECccccccC-CCC---------C------cCHHHHHHHHHHHHHHHh
Confidence 5321 11246789999999 9999999999999765 211 1 122467778888777776
Q ss_pred HhhcccCCCeEEEeeccCCCccchHHHHHHHHHHHHHHhcC-CCeEEEEcChhhhHHHHHhcCCCCCCccCCcc-ccccc
Q 002056 278 SQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYSTPSIYTDAKYASNESWPLKTDDFF-PYADR 355 (974)
Q Consensus 278 ~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~-~~~~i~~sT~~~Yf~~~~~~~~~~p~~~gDf~-py~~~ 355 (974)
+.+ .++++|+|+|+|+.+.. ++|.++|+.+|+. +.+++++||+++||++++++...||+++|||+ |+..+
T Consensus 207 ~~~---~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y~~ 278 (875)
T PRK09819 207 KKS---STKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKYMR 278 (875)
T ss_pred hcC---CCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcccc
Confidence 553 78999999999997765 5788888888865 46899999999999999988788999999998 33333
Q ss_pred CCCccceeecchhhHHHHHHHhhHHHHH-HHHHHHhh---ccCCCCCchHHHHHHHHHhcccccccCCcchhhhHHHHHH
Q 002056 356 AHAYWTGYFSSRPALKRYVKVMSGYYLA-ARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKR 431 (974)
Q Consensus 356 ~~~yWtG~~TSR~~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~r 431 (974)
.| +|+||||+.+|++||++|++|+. +|.|.+++ |..|+...++++|+.|+++||||+||||++++|++|+..|
T Consensus 279 ~H---rG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r 355 (875)
T PRK09819 279 VH---RSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVAR 355 (875)
T ss_pred cc---CCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHH
Confidence 33 59999999999999999999985 89888875 4567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEEEEEEEEEe
Q 002056 432 LAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVA 511 (974)
Q Consensus 432 l~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfNpL~~~r~~~V~i~v~ 511 (974)
+.++.+.++.+++.+++.|+.... .++...++|||||+|+|+++|++++.
T Consensus 356 ~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~v~i~~~ 405 (875)
T PRK09819 356 YKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEVINTTVY 405 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeEEEEEEE
Confidence 999999999999999999986431 12345789999999999999998774
Q ss_pred --CCcEEEEccCCCeEEEEEcCCcccccchhhhhhhhhcCCCCCCCCcEEEEEEe-ecCCCceEEEEEEecCCCCCcccc
Q 002056 512 --NGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPV-SVPPLGFSTYTISSVKRGGGHSIR 588 (974)
Q Consensus 512 --~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a-~vPplG~~~y~i~~~~~~~~~~~~ 588 (974)
...+.|.|.+|++|++|+...................+.. ....+.+.|.+ +||||||++|.+...+......
T Consensus 406 ~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~~-- 481 (875)
T PRK09819 406 LPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIVHYGNYD--PFMEFDIQINVQILPAMGYRTLYIELNEEGNVIE-- 481 (875)
T ss_pred eccCCEEEECCCCCEeeEEEeeccccccchhhcceeccCCCC--ceEEEEEEEEECCCCCcccEEEEEEeCCcccccc--
Confidence 5788999999999999998544321111100000000000 01146788874 8999999999987543311100
Q ss_pred ccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCccEEEEEEEEEEeeccCCCCCCCCCCCcceeEecCCC-ce
Q 002056 589 SSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGT-FF 667 (974)
Q Consensus 589 s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~-~~ 667 (974)
........|||++|+|+|+ ++|.| +|+||.+|+++. ++..|. +. ++.++||+|.|... ..
T Consensus 482 -------~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~-d~------~d~gD~yd~~p~~~d~~ 542 (875)
T PRK09819 482 -------PKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIE-EN------GDDGDEYDYSPPREDWV 542 (875)
T ss_pred -------ccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEE-ec------CcCCCCcccCCCCCCCE
Confidence 1223457899999999999 78999 599999999874 344443 22 33567999998653 33
Q ss_pred eecCC-cccEEEEEcccEEEEEEEE------------------cceEEEEEEEecCCCceEEEEEECcccccCCCCcEEE
Q 002056 668 IKSEG-QVPLTVMRGPILDEVHQKI------------------NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVV 728 (974)
Q Consensus 668 ~~~~~-~~~i~v~~Gpl~~ev~~~~------------------~~~i~~~vrLy~~~~~ie~e~~v~~i~~~~~~~~El~ 728 (974)
+.... ...+++++|++.+++++++ .+.++++++|++++++|+|++.|++. ..+|.|+
T Consensus 543 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lr 618 (875)
T PRK09819 543 ITSAEAVPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLR 618 (875)
T ss_pred EeccCCcceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEE
Confidence 33322 3467788899988887764 25788999999999999999999865 6799999
Q ss_pred EEEEeecCCCCeEEEccCCcceeeccccc--cCCccccCC--CCcccceEeeeeeEEEEeCCcceEEEeccccceeeccC
Q 002056 729 THITSTLETNKTFYTDSNGRDFIKRIRDY--RTDWDLEVN--EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVD 804 (974)
Q Consensus 729 ~~f~t~i~~~~~fyTD~ng~~~ikR~~~~--r~~w~~~~~--~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ssl~~ 804 (974)
+.|+++|.++..+| +.+||+++|+++. .++|+.... .|++ .||+.+|+.|.|++.+++|+||+.+|+....+
T Consensus 619 v~fp~~i~~~~~~~--d~~fG~i~Rp~~~~~~~~W~~~~~~e~p~~--~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~ 694 (875)
T PRK09819 619 VLFPTEIASKFSLA--DQQFGSITRPVNDPAMDVWEQEGWQEAPIS--IEPMQSFVALHDERHGVAVFTEGVREYEIIGE 694 (875)
T ss_pred EEccCCCCCCceEc--CCCceEEECCCcCccccccccccceeCCCC--ChhhhceEEEecCCceEEEECCCcceEEEecC
Confidence 99999999966555 5999999999764 468876533 3544 78999999999999999999999999975543
Q ss_pred --CeEEEEEEe-ec--------CCCCcccccccccccccccccCCeEEEeEEEEEeecCCCcc--cccccchhhhcCCCe
Q 002056 805 --GEVELMLHR-LL--------LDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA--KWRRTFGQEIYSPPL 871 (974)
Q Consensus 805 --G~iElml~R-l~--------~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~--~~~r~~~~~l~~p~~ 871 (974)
++|.|+|.| .- +-.+|..|-.+-+.+ .+|.| .+.|.+.|.+..+.. ....+.+++++.|+.
T Consensus 695 ~~~~i~LTLlRs~g~lgk~~l~~rpgr~sG~~~ptP~---aq~~G---~h~f~y~l~ph~g~~~~~~~~~~a~~~n~p~~ 768 (875)
T PRK09819 695 NYDTIALTLFRGVGLLGKEDLLYRPGRPSGIKIPTPD---SQLLG---ELSFRFSLTSYEGTFDEAGVAQQAKEYLTPVQ 768 (875)
T ss_pred CCCeEEEEeecccCccCCCccccCCCcccCCccCCCh---HHhcC---ceEEEEEEEEccCCcchHHHHHHHHHhccCcc
Confidence 389999999 52 233455543321111 12334 334555554433221 112346788999987
Q ss_pred eeeeccC----CCcccCCcccccccCCCCCCCCCceeEEEEEeeCCC-cEEEEEec
Q 002056 872 LAFTEED----GDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDDG-KILLRLAH 922 (974)
Q Consensus 872 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~-~illRl~~ 922 (974)
.+-.... ...-......+++.+. -.+.+|.+-++|+..++ .++||+.+
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~i~~sa~K~aed~~~~ilRlyn 821 (875)
T PRK09819 769 CYNKIPFLNMRLNDEEFTLPESYSLLK---MPPDGAVLSAVKKAEDRDGLILRFFN 821 (875)
T ss_pred eeecccccccccCcccCCCCcccccee---eCCCCEEEEEEEEeccCCCEEEEEeC
Confidence 6521100 0000001112233221 22458999999998765 49999554
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-79 Score=666.28 Aligned_cols=698 Identities=18% Similarity=0.232 Sum_probs=543.1
Q ss_pred CceEEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHH
Q 002056 38 GKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVK 117 (974)
Q Consensus 38 ~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk 117 (974)
..-+||.|+|+|+|.+|||+|.|+.+ ++.+...+.+..|+++|+++|+.++... .+|.+|.+|+.+++++
T Consensus 279 s~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAqQ-~~WlkedhP~~f~kl~ 348 (1078)
T KOG4342|consen 279 SQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQQ-LEWLKEDHPGLFSKLQ 348 (1078)
T ss_pred cccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHHH-HHHHhhhChhHHHHHH
Confidence 46789999999999999999999985 8888899999999999999999886444 4899999999999999
Q ss_pred HHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCceEEEecc
Q 002056 118 QLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRI 197 (974)
Q Consensus 118 ~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R~ 197 (974)
..+..||+-.|||.||++|.++|+|||+|||++.|++|+.++||...+.-|+||+||+|+|||||. +.+||+.|+++++
T Consensus 349 e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFLTQKL 427 (1078)
T KOG4342|consen 349 EFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFLTQKL 427 (1078)
T ss_pred HHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ChhhHHhhhcCCceeEEEecCCCCCCCCceeEeeCCC-CCCCCCCCccccccCCCCccccCcccccCCHHHHHHHHHHHH
Q 002056 198 DYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAA 276 (974)
Q Consensus 198 ~~~~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~-~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~ 276 (974)
.|+..+.+++.. |.|.|.| ||+|++|+.|. .|... -++ .+.+..+
T Consensus 428 SWNniNSFPhsT---FnW~glD----GSqvl~HmPPgntYtad-----------------------~~v----~dVL~tv 473 (1078)
T KOG4342|consen 428 SWNNINSFPHST---FNWEGLD----GSQVLVHMPPGNTYTAD-----------------------GSV----EDVLKTV 473 (1078)
T ss_pred cccccCcCCccc---eeeeecc----CceEEEecCCCCccccc-----------------------CcH----HHHHHHH
Confidence 999999998876 9999999 99999998775 45443 122 3344444
Q ss_pred HHhhcccCCCeEEEeeccCCCccchHHHHHHHHHHHH---HHhcCC-CeEEEEc-ChhhhHHHHHhc---CCCCCCccCC
Q 002056 277 ISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIH---YVNMDG-RVNALYS-TPSIYTDAKYAS---NESWPLKTDD 348 (974)
Q Consensus 277 ~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~---~~N~~~-~~~i~~s-T~~~Yf~~~~~~---~~~~p~~~gD 348 (974)
.+..+.-+.++-|+.+|-....+.+.+ +.++||.+ .-|.++ -++++.+ |+++||+++.+. +..+|+|.||
T Consensus 474 ~qnk~~~~~~~gl~lfG~GDGGGGPT~--eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~GE 551 (1078)
T KOG4342|consen 474 AQNKDKGRANHGLFLFGFGDGGGGPTQ--EMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVGE 551 (1078)
T ss_pred HhcCCccccCcceEEEEecCCCCCCcH--HHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccchh
Confidence 444444556666777774443433221 45555544 445556 5899999 999999998775 3569999999
Q ss_pred -cccccccCCCccceeecchhhHHHHHHHhhHHHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHhcccccccCCcch
Q 002056 349 -FFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR-----SETGHNTDSLADALAIAQHHDAVTGTEKQ 422 (974)
Q Consensus 349 -f~py~~~~~~yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~lw~~l~~~QhHDaItGTs~~ 422 (974)
||++|+ |.|||++.+|+++|.+|..|+.+|.+++++.. .||...++.||+.++++|+||.+||++++
T Consensus 552 LyfEfHr-------GTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCIe 624 (1078)
T KOG4342|consen 552 LYFEFHR-------GTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCIE 624 (1078)
T ss_pred eEEEEec-------CceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHHH
Confidence 569887 99999999999999999999999999998653 35667899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceE
Q 002056 423 HVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKR 502 (974)
Q Consensus 423 ~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfNpL~~~r 502 (974)
-|++|.+-.+......++.++..+++.|.... ++ .-.+++.|+|+|+|
T Consensus 625 MVykeA~p~~~~v~k~~~tLl~~a~~~L~as~-------------------------------s~-ke~L~~~nTLpW~~ 672 (1078)
T KOG4342|consen 625 MVYKEAMPHYEDVRKHGNTLLSAAAAALCASE-------------------------------SG-KEGLLIVNTLPWKR 672 (1078)
T ss_pred HHHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC-------------------------------CC-ccceEEEeccccce
Confidence 99999999999999999999999999885432 02 23578899999999
Q ss_pred EEEEEEEEeCCcEEEEccCCCeEEEEEcCCcccccchhhhhhhhhcCCCCCCCCcEEEEE-EeecCCCceEEEEEEecCC
Q 002056 503 EDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAF-PVSVPPLGFSTYTISSVKR 581 (974)
Q Consensus 503 ~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f-~a~vPplG~~~y~i~~~~~ 581 (974)
.+++.++-+... .++ ..++|.+|++... +
T Consensus 673 ~~v~~~~kp~k~---------------------------------------------~~~e~c~~~g~~ta~vt-----~ 702 (1078)
T KOG4342|consen 673 IEVMALPKPGKA---------------------------------------------HSLELCTVPGMGTAPVT-----P 702 (1078)
T ss_pred eeeecccCCCCc---------------------------------------------eeEEEeccCCccccCCC-----C
Confidence 998887643211 111 1466766654321 0
Q ss_pred CCCccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCccEEE---------EEEEEEEeeccCCCCCCCC
Q 002056 582 GGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES---------VEQSYSFYPAYNGTNDKAP 652 (974)
Q Consensus 582 ~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~---------~~~~f~~Y~~~~G~~~~~~ 652 (974)
. .+++..- ..++.++|.|+.+||.++ .+|.|+|++|...|++.. ..++|..|.. .+
T Consensus 703 --~---~~p~~~y--q~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD-------~P 767 (1078)
T KOG4342|consen 703 --P---TSPVFVY--QTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDD-------VP 767 (1078)
T ss_pred --C---CCceeEE--ecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecC-------Cc
Confidence 0 0111111 346778999999999999 579999999988888755 2367777742 25
Q ss_pred CCCcceeEecCCCceeec-CCcccEEE-EEcccEEEEEEEE----cceEEEEEEEecCC-----CceEEEEEECcccccC
Q 002056 653 QNAGAYIFRPNGTFFIKS-EGQVPLTV-MRGPILDEVHQKI----NEWIYQVTRLYKGK-----EHVEVEFIVGPIPVDD 721 (974)
Q Consensus 653 ~~sGAYiF~P~~~~~~~~-~~~~~i~v-~~Gpl~~ev~~~~----~~~i~~~vrLy~~~-----~~ie~e~~v~~i~~~~ 721 (974)
-.|.||+-.-..-..+++ .....+.| .+|++...+.+.+ ++.++++|.|..+. +.|.|.++|+ |+
T Consensus 768 L~WqAWDte~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---Wh- 843 (1078)
T KOG4342|consen 768 LYWQAWDTEDYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---WH- 843 (1078)
T ss_pred cchhhhhhhhhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---eh-
Confidence 567777532211112333 22334667 5899988777654 57899999997765 7899999986 43
Q ss_pred CCCcEEEEEEEeecCCCCeEEEccCCcceeeccccccCCccccCCCCcccceEeeeeeEEEEeCCcceEEEeccccceee
Q 002056 722 GLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSS 801 (974)
Q Consensus 722 ~~~~El~~~f~t~i~~~~~fyTD~ng~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ss 801 (974)
+..|-+.|.|+.+|.|..+.| +.+|++.||+++|+++|+-...|... ..+++..|-..+++|||||+||. |
T Consensus 844 e~~KFLKVEFPv~irs~fAsY--EtQFGitkRPTHYNTSWDvAkFEVch------hkfaDySe~~~Gvs~LNDCKYGf-S 914 (1078)
T KOG4342|consen 844 EAHKFLKVEFPVRIRSSFASY--ETQFGITKRPTHYNTSWDVAKFEVCH------HKFADYSEHGFGVSLLNDCKYGF-S 914 (1078)
T ss_pred hcCceEEeeccccccccchhh--hhhcccccCCccccccchhhHhHHHH------hhhhhhhhcccceeeeccccccc-c
Confidence 679999999999999866666 89999999999999999987776544 37899999999999999999998 6
Q ss_pred ccCCeEEEEEEe-ecCCCCcccccccccccccccccCCeEEEeEEEEEeecCCCcccc-cccchhhhcCCCeeeeeccCC
Q 002056 802 IVDGEVELMLHR-LLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKW-RRTFGQEIYSPPLLAFTEEDG 879 (974)
Q Consensus 802 l~~G~iElml~R-l~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~~~-~r~~~~~l~~p~~~~~~~~~~ 879 (974)
.+..-|.|.|+| .-.+|... |.+ ++.+...+-+.+.+... .-+.+.++++|.-+.....+.
T Consensus 915 thGnlmrLSLLRsPKaPDAhA------DmG-----------~Hei~YA~yPH~g~lds~tv~aAh~fN~~fkl~lpa~~~ 977 (1078)
T KOG4342|consen 915 THGNLMRLSLLRSPKAPDAHA------DMG-----------RHEITYALYPHKGSLDSGTVQAAHSFNFPFKLALPAPSP 977 (1078)
T ss_pred cccceeeehhhcCCCCCCccc------ccC-----------cceEEEEeccCCCCCchhHHHHHHhcCCceeeccCCCCC
Confidence 788899999999 98888654 432 45666777776654321 123678888887555443221
Q ss_pred CcccCCcccccccCCCCCCCCCceeEEEEEeeCC----CcEEEEEeccccc
Q 002056 880 DSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDD----GKILLRLAHLYQL 926 (974)
Q Consensus 880 ~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~----~~illRl~~l~~~ 926 (974)
-....|..+. .+=.+||.|-++|..++ ..|+|| .||.
T Consensus 978 -----an~d~~dafs--vsgdpnViLs~iK~aE~~~~~~SivlR---vYEs 1018 (1078)
T KOG4342|consen 978 -----ANADSWDAFS--VSGDPNVILSTIKQAESSPQRRSIVLR---VYES 1018 (1078)
T ss_pred -----CCCcccccee--ecCCchHHHHHhhhhccCcccceEEEE---ehhh
Confidence 1122333332 14457888888888764 369999 7776
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1e-59 Score=514.48 Aligned_cols=270 Identities=31% Similarity=0.505 Sum_probs=216.4
Q ss_pred EEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHH
Q 002056 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (974)
Q Consensus 41 ~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 120 (974)
+||+|||||||+||++|+++|. ..+.++|+++++.|+++|++||+++|+.++. ||.+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~-~~~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLE-DYLEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHH-HHHHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHH-HHHHhCCHHHHHHHHHH
Confidence 6999999999999999999995 6999999999999999999999998888875 45566999999999999
Q ss_pred hCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCceEEEeccChh
Q 002056 121 GSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQ 200 (974)
Q Consensus 121 ~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R~~~~ 200 (974)
++||||+|||||||+||+++++|++||||++|++|++++||+.|++||+||+||||+++|+|| +++||++++++|++++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hHHhhhcCCceeEEEecCCCCCCCCceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHHHHHHHHhh
Q 002056 201 DRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQA 280 (974)
Q Consensus 201 ~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~ 280 (974)
.++.++..+..+|+|+|+| |++||||++|.+|..+..+. +. ++++.+++++++.+
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~--------------------~~-~~~~~~~~~~~~~~ 204 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGS--------------------EF-EDADELLEQLRKLA 204 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTC--------------------CH-HHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCc--------------------cc-ccHHHHHHHHHHHH
Confidence 9998878888999999999 99999999999876530111 11 35778899999999
Q ss_pred cccCCCeEEEeeccCCCccchHHHHHHHHHHHHHHh---c-CCCeEEEEcChhhhHHHHHhcCCCCCCc-cCCccccc
Q 002056 281 NITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVN---M-DGRVNALYSTPSIYTDAKYASNESWPLK-TDDFFPYA 353 (974)
Q Consensus 281 ~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N---~-~~~~~i~~sT~~~Yf~~~~~~~~~~p~~-~gDf~py~ 353 (974)
+.+.++++|+|+|+| ..++..++++++++| + ...+++++||+++||++++++ .+||++ +|||+||+
T Consensus 205 ~~~~~~~~l~~~G~d------~~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 205 KKYYTNNILIPYGDD------DDGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CCSSSSEEEEEEEEE------HHHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred HhcCCCceEEEeecC------CCCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 999999999999999 222344555555555 4 358999999999999999998 999999 99999995
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-50 Score=488.26 Aligned_cols=663 Identities=18% Similarity=0.197 Sum_probs=474.9
Q ss_pred EEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHH
Q 002056 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (974)
Q Consensus 41 ~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 120 (974)
+|+.+.|+|.|..|+|++++..+ +......+++..|...|.++|..+. ...+.|..+..|+..++ ++|
T Consensus 199 ~I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~s~-~~~y~~l~~d~p~l~~~--~~v 266 (943)
T COG0383 199 EIPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQSA-AALYNWLKPDVPFLFSR--PAV 266 (943)
T ss_pred cccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhhhH-HHHHHHhcCccHHHhhc--ccc
Confidence 39999999999999999999974 8888999999999999999999865 44569999999999999 999
Q ss_pred hCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCceEEEeccChh
Q 002056 121 GSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQ 200 (974)
Q Consensus 121 ~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R~~~~ 200 (974)
+.|+|+++||+||.+|.++++||+++||+++|++|+.++||...|+.|.||+||.|+++|||+ ..+|+++|+++++.|+
T Consensus 267 ~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~klawn 345 (943)
T COG0383 267 EFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKLAWN 345 (943)
T ss_pred cccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHH-Hhhcchhhhccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hHHhhhcCCceeEEEecCCCCCCCCceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHHHHHHHHHHHHHhh
Q 002056 201 DRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQA 280 (974)
Q Consensus 201 ~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~ 280 (974)
+.+.++++. |.|++.| |+++++|..+.+++.. . .+ ...+++...
T Consensus 346 ~tn~~Ph~~---~~w~~~d----g~e~~~hds~~~~~~d-----------------~-----v~-------~~~~~r~~~ 389 (943)
T COG0383 346 DTNRFPHDL---LRWRWKD----GTENLAHDSICGCSSD-----------------P-----VH-------REMEYRFEK 389 (943)
T ss_pred hccCCChhH---heeeccc----ccccceeecCCCCccc-----------------H-----HH-------HHHHhhhhh
Confidence 999999865 9999999 9999999876543211 0 00 001111111
Q ss_pred cccCCCeEEEeeccC-CCccchHHHHHHHHHHHHHHhcCCCeEEEEcChhhhHHH----HHhcCCCCCCccCC-cccccc
Q 002056 281 NITRTNHIMWTMGTD-FKYQYARTWFRQLDKFIHYVNMDGRVNALYSTPSIYTDA----KYASNESWPLKTDD-FFPYAD 354 (974)
Q Consensus 281 ~~~~t~~il~~~G~D-f~~~~a~~~~~~~~~li~~~N~~~~~~i~~sT~~~Yf~~----~~~~~~~~p~~~gD-f~py~~ 354 (974)
.....|+.+|.. +..+.+.++-.+.. ...+..+|.. +.......|++.|+ |+.+|+
T Consensus 390 ---~~~~~~~~~g~gd~ggg~~~dm~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~E~hr 451 (943)
T COG0383 390 ---INQVGLYLYGYGDGGGGPSIDMLENPE---------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYLELHR 451 (943)
T ss_pred ---hccceeEEeeccCCCCCCCHHHHhccc---------------cccccceeeecceeeeeecccccccchhhhhhccC
Confidence 334456666643 33322221111111 1223333333 22234568999888 458887
Q ss_pred cCCCccceeecchhhHHHHHHHhhHHHHHHHHHHHhhc------cCCCCCchHHHHHHHHHhcccccccCCcchhhhH-H
Q 002056 355 RAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG------RSETGHNTDSLADALAIAQHHDAVTGTEKQHVAN-D 427 (974)
Q Consensus 355 ~~~~yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~l~~------~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~-d 427 (974)
|+||+....|.++|.+|..|+.+|.+.+++. ..++...++++|+.++++|+||.++|++...|+. +
T Consensus 452 -------g~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~ 524 (943)
T COG0383 452 -------GTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSYD 524 (943)
T ss_pred -------ceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechhh
Confidence 9999999999999999999999998887742 3456778999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEEEEEE
Q 002056 428 YAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIR 507 (974)
Q Consensus 428 y~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfNpL~~~r~~~V~ 507 (974)
....+......+..++..+++.|.+.. .....++|++.|.+.
T Consensus 525 a~~~~~~~~~~~~~i~~~~~~~l~~~~----------------------------------~e~~~~~~~~~~~~~---- 566 (943)
T COG0383 525 ALPLLEVVQKGASKIAELALKVLSSQC----------------------------------LENLFVKNTLSWNGI---- 566 (943)
T ss_pred HHHHHHhhhccchhhhhhhhhhhhhcc----------------------------------ccceEEEeeccCCcc----
Confidence 888888888888888888888773321 124679999999981
Q ss_pred EEEeCCcEEEEccCCCeEEEEEcCCcccccchhhhhhhhhcCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCccc
Q 002056 508 IPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSI 587 (974)
Q Consensus 508 i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPplG~~~y~i~~~~~~~~~~~ 587 (974)
.+.|+|..++.++.+.+. ...++|++|...++++......
T Consensus 567 ------~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~---- 606 (943)
T COG0383 567 ------SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP---- 606 (943)
T ss_pred ------eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc----
Confidence 556677655554433221 0146889998888873322110
Q ss_pred cccceecccCCCCceEEecceEEEEEeCCCC-CeEEEEecCCccEEEEEEEEEEeeccCCCCCCCCCCCcceeEecCCCc
Q 002056 588 RSSIQTFESSDKSTVEVGQGNLKLIFSSDKS-KPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF 666 (974)
Q Consensus 588 ~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G-~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~ 666 (974)
.....+++..+..++ ++| .+..+.++ +..+.||.-.+....
T Consensus 607 ------------~~~~~~~~~~~~~~~-~~gn~~~~~~~~-------------------------~~~~~~w~i~~~~~~ 648 (943)
T COG0383 607 ------------ETVIEEKEWKRLIIN-DTGNQLALIEDE-------------------------PAYWDAWNIDKFLEE 648 (943)
T ss_pred ------------cccccccchheeecc-CCCcceeeeecc-------------------------cceechhcchhhhhh
Confidence 112234444445554 566 22211111 222345544433221
Q ss_pred -eeecCCcccEEEEEcccEEEEEEEE---cceEEEEEEEecCCCceEEEEEECcccccCCCCcEEEEEEEeecCCCCeEE
Q 002056 667 -FIKSEGQVPLTVMRGPILDEVHQKI---NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFY 742 (974)
Q Consensus 667 -~~~~~~~~~i~v~~Gpl~~ev~~~~---~~~i~~~vrLy~~~~~ie~e~~v~~i~~~~~~~~El~~~f~t~i~~~~~fy 742 (974)
...+.....-.+++|||..++++.. .+.+++.|++++++++|+|++.|++. ..+|.+++.|+++++++...
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a~- 723 (943)
T COG0383 649 ELLALTALPEEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFAT- 723 (943)
T ss_pred hhhhhhccccchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEeccccccccee-
Confidence 1122222222357999999998865 46789999999999999999999865 67999999999999985433
Q ss_pred EccCCcceeeccccccCCccccCCCCcccceEeeeeeEEEEeCCcc--eEEEeccccceeeccCCeEEEEEEe-e-----
Q 002056 743 TDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKE--FSLLVDRALGGSSIVDGEVELMLHR-L----- 814 (974)
Q Consensus 743 TD~ng~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~--ltvl~dr~~G~ssl~~G~iElml~R-l----- 814 (974)
.+..|+.++|+++.+++|+....+ -|+..++.+.|...+ +++++|++||++ .+++.|.|+|.| .
T Consensus 724 -~d~~fg~v~Rp~~~~~~W~~a~~e------~p~~~~vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~~~gd 795 (943)
T COG0383 724 -ADIPFGVVERPTHPNTSWENARFE------VPLQKFVDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVGELGD 795 (943)
T ss_pred -ccccceeeccCCCCchhhhcccCc------chhhccccccCCccceeEeccCCcceeEe-ccCCEEEEEeccccccccc
Confidence 369999999999999999865443 368899999999998 888999999995 599999999999 7
Q ss_pred --cCCCCcccccccccccccccccCCeEEEeEEEEEeecCCCccc--ccccchhhhcCCCeeeeeccCCCcccCCccccc
Q 002056 815 --LLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAK--WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTF 890 (974)
Q Consensus 815 --~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~~--~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 890 (974)
.++|. +-+ |-| .++|.+.+.+...... .....++.++.|........+.. .......+
T Consensus 796 ~~~~P~p--------~Ad-----~~g---~h~~~y~ly~h~~~~~~~~~~~~a~~~~~P~~~~~~~~~~~--~~~~~~~~ 857 (943)
T COG0383 796 WGYRPDP--------EAD-----CLG---EHEFTYALYPHQGSFLSAPTAVRAYELNVPVRTVQVEEDGV--EGTLEATL 857 (943)
T ss_pred ccccCCc--------hhh-----hcc---ceeEEEEEEEccccccccchhhhhhhccCceEEeecccccc--cccchhcc
Confidence 44443 221 222 2344444444432211 11123444566665554322110 00001111
Q ss_pred c---cCCCCCCCCCceeEEEEEeeCCC-cEEEEEeccccc
Q 002056 891 S---GIDSSYSLPDNVAIITLQELDDG-KILLRLAHLYQL 926 (974)
Q Consensus 891 ~---~l~~~~~lp~nvhlltl~~~~~~-~illRl~~l~~~ 926 (974)
+ ++. ..-|+++.|-++|+..++ .++||+.+....
T Consensus 858 ~~~~~~~--~~~~~~~~lsA~K~aed~~~~IlR~yn~~~~ 895 (943)
T COG0383 858 DLLEPLL--LVGPDNLILSALKRAEDGDGLILRLYNPSGT 895 (943)
T ss_pred ccccccc--cCCCcceEEEeeeecccCCceEEEEeccCCC
Confidence 1 111 145899999999999876 699997765433
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=9.9e-41 Score=393.14 Aligned_cols=410 Identities=27% Similarity=0.417 Sum_probs=277.6
Q ss_pred EEEEEEcCCCceEEEEEEEEEeCCcEEEEccCCCeEEEEEcCCcccccchhhhhhhhhcCCCCCCCCcEEEEEEeecCCC
Q 002056 490 LVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPL 569 (974)
Q Consensus 490 ~~vvvfNpL~~~r~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPpl 569 (974)
+.|+|||||+|+|+++|+|++..+.+.+.|..|++|++|++|... ....|+|+|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 579999999999999999999999999999999999999998211 1245789998899999
Q ss_pred ceEEEEEEecCCCCCccccccceecccCCCCceEEecceEEEEEeCCCCCeEEEEecCCccEEE--EEEEEEEeeccCCC
Q 002056 570 GFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES--VEQSYSFYPAYNGT 647 (974)
Q Consensus 570 G~~~y~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~--~~~~f~~Y~~~~G~ 647 (974)
||++|.|............ .. ....+...|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|....++
T Consensus 62 Gy~~~~i~~~~~~~~~~~~-~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~ 136 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEA-SI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGD 136 (457)
T ss_dssp EEEEEEEEECSS--TTC---CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSC
T ss_pred eeEEEEeeccccccccccc-ee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEecccccc
Confidence 9999999987654322100 00 01113478999999999996669999999999999999 88999999765442
Q ss_pred CC---CCCCCCcceeEecCCCceeecCCcccEEEEEcc--cEEEEEEEEcceEEEEEEEecCCCceEEEEEECcccccCC
Q 002056 648 ND---KAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGP--ILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 722 (974)
Q Consensus 648 ~~---~~~~~sGAYiF~P~~~~~~~~~~~~~i~v~~Gp--l~~ev~~~~~~~i~~~vrLy~~~~~ie~e~~v~~i~~~~~ 722 (974)
.. .....+|+|.|.|++.....+.-...+.+ .+. ++.++.....+.++++++||+++++|||++.|+|.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~-p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~--- 212 (457)
T PF07748_consen 137 YDISPLELQRSGAYLFVEDGPLRSSIRVEYKFEL-PKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE--- 212 (457)
T ss_dssp TTE-SCCCGSEECCEEEEESSSEEEEEEEEEEEE-ESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT---
T ss_pred ccccccccccCceEEEEecCCceEEEEEEEEEec-cCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc---
Confidence 11 12336899999987763111100001111 111 3344444456789999999999999999999997532
Q ss_pred CC-cEEEEEEEeecCCCCeEEEccCCcceeeccccccCCccccCCCCcccceEeeeeeEEEEeCCcceEEEeccccceee
Q 002056 723 LG-KEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSS 801 (974)
Q Consensus 723 ~~-~El~~~f~t~i~~~~~fyTD~ng~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ss 801 (974)
.. ++++++|+|+|.++..||+|.+|+.+.+|+++ .+.|.++|||||.+.++|.|.+.+|+|+||+++|+++
T Consensus 213 ~~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~--------~~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~ 284 (457)
T PF07748_consen 213 DHRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTH--------PNTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYES 284 (457)
T ss_dssp SCEEEEEEEEEES-S-TCEEEEESTTEEEEECESS--------TTTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEE
T ss_pred CCceeEEEEeecCCCCCCEEEECCCCeEEecCCcc--------ccCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEe
Confidence 22 36999999999999999988666655444544 2367889999999999999999889999999999998
Q ss_pred cc-CCeEEEEEEe-ecCCCCcccccccccccccccccCCeEEEeEEEEEeecCCCcccccccchhhhcCCCeeeeeccCC
Q 002056 802 IV-DGEVELMLHR-LLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPPLLAFTEEDG 879 (974)
Q Consensus 802 l~-~G~iElml~R-l~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~ 879 (974)
+. +|+|+||||| +.+||++|++ .|.|.+...........+.+..+++|++++....
T Consensus 285 ~~~~g~l~ltL~R~~~~D~g~~~~--------------------~~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~-- 342 (457)
T PF07748_consen 285 LDQDGELELTLLRRPSQDDGRGVF--------------------RYALYPHSGSWDEADVVQEAYELNQPLIVFNSSN-- 342 (457)
T ss_dssp CTTTTEEEEEEEEEBSCG-SSSEE--------------------CCEEEEEEEEEEEEECHHCHHHHTS-EEEESS----
T ss_pred ccCCCeEEEEEeecccccCCccEE--------------------EEEEEEeccccccccchhhhhhccCccEEeeccc--
Confidence 87 9999999999 9999999976 1334333222111111235678999998772211
Q ss_pred CcccCCcccccccCCC-CCCCCCceeEEEE-----EeeCCC-----cEEEEEecccccCCCCC---CCcc---eeeeccc
Q 002056 880 DSWRNSHVTTFSGIDS-SYSLPDNVAIITL-----QELDDG-----KILLRLAHLYQLGEDND---LSKP---TNVELKK 942 (974)
Q Consensus 880 ~~~~~~~~~~~~~l~~-~~~lp~nvhlltl-----~~~~~~-----~illRl~~l~~~~~~~~---~s~~---~~v~l~~ 942 (974)
. .......++++.. ...+|+++|+.+| |+.+++ .++||+.+......... ++.+ +++++.+
T Consensus 343 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (457)
T PF07748_consen 343 -I-QARQLNSFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEASLDFLSKPLSGAEVNLVN 420 (457)
T ss_dssp -T-TBEE--CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCCTTCCTSCCTEEEEEEEES
T ss_pred -c-ccccccCCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCccccccccCCccceeEEEEecc
Confidence 1 1112233343321 1247888877777 666555 68888765444432222 2345 7888899
Q ss_pred cCCCCCcceEEEccccc
Q 002056 943 LFPRKKIGKVTETSLSA 959 (974)
Q Consensus 943 lf~~~~~~~~~EtsLt~ 959 (974)
+|....+..+.||++++
T Consensus 421 lle~~~~~~i~e~s~~~ 437 (457)
T PF07748_consen 421 LLEEPDIEEIEETSLSD 437 (457)
T ss_dssp TTSSSCEEEEEEE-SEE
T ss_pred cccCCCccceEeeccCC
Confidence 99998889999999654
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.83 E-value=1.3e-21 Score=170.44 Aligned_cols=75 Identities=35% Similarity=0.549 Sum_probs=65.1
Q ss_pred CccceeecchhhHHHHHHHhhHHHHHHHHHHHhhccC-----CCCCchHHHHHHHHHhcccccccCCcchhhhHHHHHHH
Q 002056 358 AYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRS-----ETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 432 (974)
Q Consensus 358 ~yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~l~~~~-----~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (974)
+||+|||||||.+|+++|++|++|+.||.+.+++... ++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 4899999999999999999999999999999985432 45567899999999999999999999999999999886
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.80 E-value=4.1e-20 Score=160.54 Aligned_cols=74 Identities=36% Similarity=0.534 Sum_probs=68.1
Q ss_pred ccceeecchhhHHHHHHHhhHHHHHHHHHHHhh-----ccCCCCCchHHHHHHHHHhcccccccCCcchhhhHHHHHHH
Q 002056 359 YWTGYFSSRPALKRYVKVMSGYYLAARQLEFYI-----GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 432 (974)
Q Consensus 359 yWtG~~TSR~~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (974)
||+||||||+.+|+++|++|++|+.+|.+.+++ +..++...++.+|+.|+++||||+||||++++|++||..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 799999999999999999999999999998875 34566778999999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=5.3e-21 Score=235.17 Aligned_cols=358 Identities=16% Similarity=0.106 Sum_probs=261.7
Q ss_pred CceEEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHH
Q 002056 38 GKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEV 116 (974)
Q Consensus 38 ~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~v 116 (974)
.+..+|++.|+|||++|+.+.+.+.. .+...++.+++.++++|. ..|..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 34567999999999999999999886 556669999999999994 44888888876677777899999999
Q ss_pred HHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCceEEEec
Q 002056 117 KQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR 196 (974)
Q Consensus 117 k~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R 196 (974)
+.+++.|++ .+|.++.+.|.+.+++|+.+|++++|..+ ...+|...+.||.+|.||+..++|+++ ..+|++.+.|+|
T Consensus 73 ~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~-~~~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~~f~r 149 (943)
T COG0383 73 KLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFD-AERFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAVAFGR 149 (943)
T ss_pred HHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHH-HHHhhhhhccccccccchhhhhhhHHH-HhcCCchhhccc
Confidence 999999999 78888899999999999999999999995 666779999999999999999999999 899999999999
Q ss_pred cChhh------HH---hhhcCCceeEEEecCCCCCCCCceeEeeCCCCCCCCCCCccccccCCCCccccCcccccCCHHH
Q 002056 197 IDYQD------RA---KRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQD 267 (974)
Q Consensus 197 ~~~~~------k~---~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~ 267 (974)
+.... .. .-....-.+..|.+++ +++++.+.++..|..+ ....-. .-.-++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g-~~I~~~--------------ghahid~ 210 (943)
T COG0383 150 GAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNG-NEIPAV--------------GHAHIDT 210 (943)
T ss_pred ccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhcc-cccccc--------------chhhHHH
Confidence 76321 10 1112234467898888 8888888888888776 221000 0011222
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEeeccCCCccchHHHHHHHHHHHHHHhcC-CCeEEEEcC----hhhhHHHHHhcC-CC
Q 002056 268 RVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYST----PSIYTDAKYASN-ES 341 (974)
Q Consensus 268 ~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~-~~~~i~~sT----~~~Yf~~~~~~~-~~ 341 (974)
.+..-++..++.+ .+..++++.|+|..+.. .++...+++.|.- ......|+. ...|+......- ..
T Consensus 211 aWlw~l~et~r~a---~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERKA---STSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHHH---hhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 2333344445444 67778899999988776 6777777777742 233444444 444554433321 34
Q ss_pred CCCccCCccc-ccccCCCccc--eeecchhhHHHHHHHhhHHHHH-HHHHHH-------h---hccCCCCCchHHHHHHH
Q 002056 342 WPLKTDDFFP-YADRAHAYWT--GYFSSRPALKRYVKVMSGYYLA-ARQLEF-------Y---IGRSETGHNTDSLADAL 407 (974)
Q Consensus 342 ~p~~~gDf~p-y~~~~~~yWt--G~~TSR~~~K~~~R~~e~~L~~-ae~l~~-------l---~~~~~~~~~~~~lw~~l 407 (974)
.++.+||+.. -..+-..|.+ ..-+||..+|..+-..+..|-. ++.+.. + .+..+|...+.-.|+.+
T Consensus 283 ~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~~dg 362 (943)
T COG0383 283 LNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRWKDG 362 (943)
T ss_pred CCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeecccc
Confidence 6888999862 2222111221 4458999999998777776641 222221 1 12345666677789999
Q ss_pred HHhcccccccCCcchhhhHHHHHHHHH
Q 002056 408 AIAQHHDAVTGTEKQHVANDYAKRLAI 434 (974)
Q Consensus 408 ~~~QhHDaItGTs~~~V~~dy~~rl~~ 434 (974)
..++.||++|||+.+.|+.+...|...
T Consensus 363 ~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 363 TENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred cccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999988865
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.42 E-value=7.8e-07 Score=101.25 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHH-----------------------------------------
Q 002056 74 VQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAM----------------------------------------- 112 (974)
Q Consensus 74 v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~----------------------------------------- 112 (974)
..+.+--++..|++.|+.|++.+=...|.+++++..+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 344555677777777767766653444567887777777
Q ss_pred -----HHHHHHHHhCCCEEEEcceeeeecccCCCh-HHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhh
Q 002056 113 -----QHEVKQLVGSGQLEFINGGMCMHDEAVTHY-IDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSE 186 (974)
Q Consensus 113 -----~~~vk~lV~~Grle~vgGgwv~~Dea~~~~-es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~ 186 (974)
.+.+|+|+++|++|+++++|..+=-.+..- +++..|+..|.+.+++.||++|+..|.|. .+.+..+..+| ++
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l-~~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEIL-AE 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHH-HH
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHH-HH
Confidence 899999999999999999998888877888 99999999999999999999999999998 79999999999 99
Q ss_pred cCCceEEEec
Q 002056 187 VGFDSFFYGR 196 (974)
Q Consensus 187 ~G~~~~~~~R 196 (974)
+||+++++.-
T Consensus 186 ~Gi~~~i~d~ 195 (360)
T PF03065_consen 186 AGIRYTILDG 195 (360)
T ss_dssp TT--EEEEEC
T ss_pred cCCEEEEECc
Confidence 9999999864
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.0086 Score=67.20 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCe----------EEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCC
Q 002056 72 ACVQNVLDSVIPELLADKNRK----------FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTH 141 (974)
Q Consensus 72 ~~v~~il~~vl~~L~~~p~~k----------F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~ 141 (974)
.+..+-|+..++.+++...|. |..-+-.-....|+..+.....+||++.+.|.+|+++++.+-.---+-.
T Consensus 75 ~ry~~~Le~~~el~e~e~~R~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~ 154 (504)
T COG1543 75 DRYLRYLEWKIELSEKEEKRYADQSLRELAEFYIPEFLNARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLG 154 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcC
Confidence 345556666666666543321 1111111234677888899999999999999999998876544332222
Q ss_pred -hHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCceEEEe
Q 002056 142 -YIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYG 195 (974)
Q Consensus 142 -~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~ 195 (974)
-|++=-|+..|.+-..++||..|+--|.|. -++.+.++.+| +..||+++++-
T Consensus 155 ~peAi~AQi~~g~~~ye~~fg~~P~GiWlPE-cay~pgie~~l-~~~Gi~yf~vd 207 (504)
T COG1543 155 GPEAIEAQILTGIELYEEHFGLAPKGIWLPE-CAYAPGIERIL-KDAGIEYFFVD 207 (504)
T ss_pred CchhhHHHHHHHHHHHHHHhCCCCCceechh-hccccchHHHH-HhcCceEEEec
Confidence 488889999999988889999999999995 79999999999 89999999975
No 14
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.65 Score=56.27 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=79.7
Q ss_pred EEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCC----ChHHHHHHHHHHHHHHHHHcCCCCceee
Q 002056 93 FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVT----HYIDMIDQTTLGHRFIKNEFGVTPRIGW 168 (974)
Q Consensus 93 F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~----~~es~Irql~~G~~~l~~~fG~~p~~~w 168 (974)
|++++..-+..+-....++..+.+|++++.|+.|++.-.|--+=-.+- -++++++|+..+....++.||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 777763344455556678889999999999999999888844422222 3569999999999999999999999999
Q ss_pred ecCCCCCChhhHHHHhhhcCCceE
Q 002056 169 QIDPFGHSAVQAYLLGSEVGFDSF 192 (974)
Q Consensus 169 ~~D~FGhs~~~p~ll~~~~G~~~~ 192 (974)
.+- +=.+.++..++ +.+|+...
T Consensus 242 ~tE-l~y~~~i~~~~-~e~G~~~~ 263 (615)
T COG1449 242 NTE-LAYNDQILEYF-EESGFSWI 263 (615)
T ss_pred Chh-hhccHHHHHHH-HHcCCccc
Confidence 987 78899999999 99999953
No 15
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.24 E-value=0.2 Score=47.22 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHH
Q 002056 75 QNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGH 153 (974)
Q Consensus 75 ~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~ 153 (974)
...+..+++.|+++.- ..|-.... +..+. .+.+++++++| +||.+-||.-++....+.+.+.+++..+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~-~~~~~--------~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~ 86 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS-WVERY--------PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSR 86 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH-HHHHH--------HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccceeeeeccc-ccccc--------cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHH
Confidence 3456788888888642 33433322 22222 68899999999 99999999988888889999999999999
Q ss_pred HHHHHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCce
Q 002056 154 RFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 191 (974)
Q Consensus 154 ~~l~~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~~ 191 (974)
++|++.+|..|+. -.=|||. +..+-+++ +++||++
T Consensus 87 ~~l~~~~g~~~~~--f~~P~g~~~~~~~~~l-~~~G~~y 122 (123)
T PF01522_consen 87 EILEEITGRPPKG--FRYPFGSYDDNTLQAL-REAGYKY 122 (123)
T ss_dssp HHHHHHHSSEESE--EE-GGGEECHHHHHHH-HHTT-EE
T ss_pred HHHHHHhCCCCcE--EECCCCCCCHHHHHHH-HHcCCCc
Confidence 9999999994443 4457886 77788999 8999987
No 16
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=93.79 E-value=5.7 Score=43.82 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhCC-CCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHH
Q 002056 74 VQNVLDSVIPELLADK-NRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLG 152 (974)
Q Consensus 74 v~~il~~vl~~L~~~p-~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G 152 (974)
.+.=+-.+++.|.++- ..+|-... |+.+.+|+ .+|+++++| .||.+=||...+-..-+.+...++|..+
T Consensus 75 ~rvG~~RiLdlL~~~gv~aTffv~g------~~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s 144 (297)
T TIGR03212 75 SRAGFWRLLRLFTERGIPVTVFGVA------MALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEA 144 (297)
T ss_pred chhCHHHHHHHHHHcCCCEEEEeEH------HHHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHH
Confidence 3444666888888764 34465544 33456774 677777899 8999999987776666888899999999
Q ss_pred HHHHHHHcCCCCceeeecCCCCCChhhHHHHhhh-cCCceEEEeccC
Q 002056 153 HRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSE-VGFDSFFYGRID 198 (974)
Q Consensus 153 ~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~-~G~~~~~~~R~~ 198 (974)
.+-|++..|.+| .||.. -.+|..++.|+ ++ .||.+..-+..+
T Consensus 145 ~~~i~~~tG~~P-~G~~~--~~~s~~T~~LL-~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 145 IRLHTEVTGERP-LGWYT--GRTSPNTRRLV-AEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHhCCCC-ceEEC--CCCChhHHHHH-HHhcCceEeCchhhc
Confidence 998888888765 46653 36899999999 88 999988765544
No 17
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=92.44 E-value=0.98 Score=47.76 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=76.8
Q ss_pred HHHHHHHhCC-CCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHH
Q 002056 80 SVIPELLADK-NRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158 (974)
Q Consensus 80 ~vl~~L~~~p-~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~ 158 (974)
.+++.|+++- ..+|-..+. |. +..| +.+|+++++|- ||-+-+|.-++-...+.+.+.+++....+.|++
T Consensus 54 ~lL~~L~~~~vkATFFv~G~-----~~-~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~ 123 (224)
T TIGR02884 54 KILDVLKEKKVPAAFFVTGH-----YI-KTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKK 123 (224)
T ss_pred HHHHHHHHcCCCeEEEeech-----hh-HHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHH
Confidence 4677787764 344555442 22 3444 67899999995 688889987777777889999999999999999
Q ss_pred HcCCCCceeeecCCCC-CChhhHHHHhhhcCCceE
Q 002056 159 EFGVTPRIGWQIDPFG-HSAVQAYLLGSEVGFDSF 192 (974)
Q Consensus 159 ~fG~~p~~~w~~D~FG-hs~~~p~ll~~~~G~~~~ 192 (974)
..|..+ ..|.-=|+| ++..+.+++ +++|+..+
T Consensus 124 ~~G~~~-~~~fR~P~G~~~~~~~~~l-~~~Gy~~v 156 (224)
T TIGR02884 124 VTGQKE-MKYFRPPRGVFSERTLAYT-KELGYYTV 156 (224)
T ss_pred HhCCCC-CCEEeCCCCCcCHHHHHHH-HHcCCcEE
Confidence 999762 236667899 477899999 89999864
No 18
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=92.35 E-value=1.4 Score=45.34 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=75.9
Q ss_pred HHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHH
Q 002056 79 DSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIK 157 (974)
Q Consensus 79 ~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~ 157 (974)
..+++.|+++.- .+|-.... | .+.+| +.+++++++|- ||-+-+|.-++-...+.+.+.+++..+.+.|+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~-----~-~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS-----W-AERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH-----H-HHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 456677777643 34544432 2 23344 57889999995 79999998888777889999999999999999
Q ss_pred HHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCceE
Q 002056 158 NEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDSF 192 (974)
Q Consensus 158 ~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~~~ 192 (974)
+..|..|+ |--=|+|. +..+..++ ++.||..+
T Consensus 92 ~~~g~~~~--~fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPT--LFRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHhCCCCC--EEECCCcCCCHHHHHHH-HHcCCeEE
Confidence 99998876 44556774 77778888 89999854
No 19
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=90.24 E-value=2.7 Score=45.54 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHhCC-CCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHH
Q 002056 72 ACVQNVLDSVIPELLADK-NRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTT 150 (974)
Q Consensus 72 ~~v~~il~~vl~~L~~~p-~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~ 150 (974)
.+|...+..+++.|+++- ..+|-..+ |+.+..| +.+|+++++| .||.+=||.-.+-..-+.+.+..++.
T Consensus 24 ~rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~ 93 (265)
T TIGR03006 24 CRVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIR 93 (265)
T ss_pred chHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHH
Confidence 367777888999999874 34555543 3344566 4699999999 69999999877666668899999999
Q ss_pred HHHHHHHHHcCCCCceeeecCCCCCC---hhhHHHHhhhcCCceEEEe
Q 002056 151 LGHRFIKNEFGVTPRIGWQIDPFGHS---AVQAYLLGSEVGFDSFFYG 195 (974)
Q Consensus 151 ~G~~~l~~~fG~~p~~~w~~D~FGhs---~~~p~ll~~~~G~~~~~~~ 195 (974)
...+.|++..|..|+ ||-.=.+..+ .....++ +++||.+..-.
T Consensus 94 ~s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~YdsS~ 139 (265)
T TIGR03006 94 RSKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCEEEEee
Confidence 999999888888776 5543333333 3346899 89999986543
No 20
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=89.13 E-value=3.9 Score=44.46 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCC-CCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHH
Q 002056 78 LDSVIPELLADK-NRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFI 156 (974)
Q Consensus 78 l~~vl~~L~~~p-~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l 156 (974)
...+++.|.++- ..+|-..+. |. +.+| +.+|+++++|- ||-+=+|.-++-...+.+.+.++|..+.+.+
T Consensus 100 t~~iL~iLkk~~vkATFFv~G~-----~i-~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEGK-----WV-KENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeehH-----hh-hHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 446777887764 344555542 32 3455 45788899995 7999999888888888899999999999999
Q ss_pred HHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCce
Q 002056 157 KNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 191 (974)
Q Consensus 157 ~~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~~ 191 (974)
.+..|..|+ |.-=|+|. +..+.+++ +++|+..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 999999887 66668987 57788888 8999874
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=85.06 E-value=25 Score=43.14 Aligned_cols=151 Identities=17% Similarity=0.293 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCEEEEcceeeeeccc--------------------CCCh-------HHHHHHHHHHHHHHHHHcCCCCce
Q 002056 114 HEVKQLVGSGQLEFINGGMCMHDEA--------------------VTHY-------IDMIDQTTLGHRFIKNEFGVTPRI 166 (974)
Q Consensus 114 ~~vk~lV~~Grle~vgGgwv~~Dea--------------------~~~~-------es~Irql~~G~~~l~~~fG~~p~~ 166 (974)
+.||+++++|-+||-+=+|..|.-. ...| +.+.+.+....+.|++..|..|++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999988888655311 0122 226678999999999999998875
Q ss_pred eeecCCCCC-ChhhHHHHhhhcCCceEEEeccChhhHHhhhcCCceeEEEecCCCCCCCCceeEeeCCCCCCCCCCCccc
Q 002056 167 GWQIDPFGH-SAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYF 245 (974)
Q Consensus 167 ~w~~D~FGh-s~~~p~ll~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~~~d~~~~gs~i~t~~~~~~Y~~p~~~f~f 245 (974)
..=|||+ +.....++ +++||+..+..+-.... .+.. |.-| + +..
T Consensus 248 --FayPyG~~n~~~~~ia-keaGY~~afT~~~G~~~----------------------~~~~--------~~Lp-R-i~I 292 (671)
T PRK14582 248 --WVWPYGEANGIALEEL-KKLGYDMAFTLESGLAN----------------------ASQL--------DSIP-R-VLI 292 (671)
T ss_pred --EecCCCCCCHHHHHHH-HHCCCeEEEEeCCCCCC----------------------CCCc--------Cccc-e-EEe
Confidence 5568985 67788999 89999988765422100 0000 1111 0 000
Q ss_pred cccCCCCccccCcccccCCHHHHHHHHHHHHHHhhcccCCCeEEEeeccCCCc-cchHHHHHHHHHHHHHHhcCC
Q 002056 246 EVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKY-QYARTWFRQLDKFIHYVNMDG 319 (974)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~-~~a~~~~~~~~~li~~~N~~~ 319 (974)
. .++ . ++.|...+.... .....+++-.+-|+-| .++..+-++++++|+.+.+.+
T Consensus 293 ~---------~~~-----s----l~~f~~~v~~~~--~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 293 A---------NNP-----S----LKEFAQQIITVQ--EKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred c---------CCC-----C----HHHHHHHHhccc--CCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 0 001 1 234544443221 2455667777778887 566667799999999988654
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=80.59 E-value=9.2 Score=46.80 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCEEEEcceeeeecc--------------------cCCChH-------HHHHHHHHHHHHHHHHcCCCCc
Q 002056 113 QHEVKQLVGSGQLEFINGGMCMHDE--------------------AVTHYI-------DMIDQTTLGHRFIKNEFGVTPR 165 (974)
Q Consensus 113 ~~~vk~lV~~Grle~vgGgwv~~De--------------------a~~~~e-------s~Irql~~G~~~l~~~fG~~p~ 165 (974)
.++||+++++|-+||-+=+|..+.- ....+| .+-+.+....+.|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3689999999999998888876631 112233 2556678888989999999887
Q ss_pred eeeecCCCCC-ChhhHHHHhhhcCCceEEEec
Q 002056 166 IGWQIDPFGH-SAVQAYLLGSEVGFDSFFYGR 196 (974)
Q Consensus 166 ~~w~~D~FGh-s~~~p~ll~~~~G~~~~~~~R 196 (974)
. ..=|||+ +...-.++ +++||+..+..+
T Consensus 247 ~--FayPyG~yn~~~~~ia-k~aGy~~afTt~ 275 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNIL-RQHGYQLAMTLD 275 (672)
T ss_pred E--EEcCCCCcCHHHHHHH-HHCCCcEEEECC
Confidence 4 4568995 78889999 899999888665
No 23
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=72.71 E-value=1.6e+02 Score=32.58 Aligned_cols=80 Identities=13% Similarity=-0.020 Sum_probs=60.4
Q ss_pred HHHHHHHhCCCEEEEcceeeee----cccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCC
Q 002056 114 HEVKQLVGSGQLEFINGGMCMH----DEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGF 189 (974)
Q Consensus 114 ~~vk~lV~~Grle~vgGgwv~~----Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~ 189 (974)
+.+|+.+++ -|+.+=||.-. .-..-+.+.+.++|..+.+-|++..|..|+ ||-+=.+-.+..+..++ +++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHH-HHcCC
Confidence 456777777 89988888644 234457788999999999988888888764 45555555678889999 89999
Q ss_pred ceEEEecc
Q 002056 190 DSFFYGRI 197 (974)
Q Consensus 190 ~~~~~~R~ 197 (974)
.|-.-.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 99854444
No 24
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=67.41 E-value=58 Score=31.88 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=54.7
Q ss_pred CCceEEe-cceEEEEEeCCCCCeEEEEecCCccEEEEEEEEEEeeccCCCCCCCCCCCcceeEecCCCceeecCCcccEE
Q 002056 599 KSTVEVG-QGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLT 677 (974)
Q Consensus 599 ~~~~~ie-N~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~~~~~~~~~~i~ 677 (974)
.+.-.|+ ++.|+|.++..++.+. |++|++|....+--+=.+.. .| ..--+++|.-+. .+.+.....|.
T Consensus 7 dgkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~--~G------dg~~~fDFk~~~--tf~L~DGTKIt 75 (171)
T PF07481_consen 7 DGKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDA--DG------DGKTDFDFKGDM--TFQLDDGTKIT 75 (171)
T ss_pred CCeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCcccc--CC------CcccceeecCce--EEEeCCCCEEE
Confidence 3445677 7789999996678887 99999999887533322211 11 111267886433 45555555666
Q ss_pred EEEcccEEEEEEEEcceEEEEEEEecCCCceEEE
Q 002056 678 VMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVE 711 (974)
Q Consensus 678 v~~Gpl~~ev~~~~~~~i~~~vrLy~~~~~ie~e 711 (974)
|..=|.-. +..+...+.+.++...+.++
T Consensus 76 V~T~p~gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 76 VDTVPWGN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred EeeeecCC------CcEEeeeEEEEcCCceEEEe
Confidence 54322111 12333445566666655554
No 25
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=63.13 E-value=8.7 Score=31.33 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCEEEEccee
Q 002056 110 EAMQHEVKQLVGSGQLEFINGGM 132 (974)
Q Consensus 110 p~~~~~vk~lV~~Grle~vgGgw 132 (974)
++.++-+-++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 34566678999999999998877
No 26
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=44.34 E-value=29 Score=42.14 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=71.5
Q ss_pred ccchhhheeeeccCCcchhhHHHHHHHHHHHHHHh--CCCCeEEEechhH--HHHHHHhcCHHHHHHHHHHHhCCCEEEE
Q 002056 53 GWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLA--DKNRKFIYVEQAF--FQRWWDEQSEAMQHEVKQLVGSGQLEFI 128 (974)
Q Consensus 53 gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~--~p~~kF~~~e~~~--~~~w~~~~~p~~~~~vk~lV~~Grle~v 128 (974)
.=|..||+||. .- +.......-+| +|.|.|..++..| +.-| +..++--.-.+.|+.-|=
T Consensus 54 ~~L~~FE~yy~--------~T---L~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw--~sa~dFgt~~hTLigY~v---- 116 (682)
T PHA03393 54 DDLDTFERYYK--------NT---LTQKFLQKAEKIANPTRQFSDDDNIFDGLSPW--TSANDFGTLCHTLIGYCV---- 116 (682)
T ss_pred hHHHHHHHHHH--------HH---HHHHHHhhhhhhcCCcccccCCCceecCCccc--cCHHHHHHHHHHHHhheE----
Confidence 45889999985 11 22223334444 7898899777555 3334 223344444566654432
Q ss_pred cceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCC-------CChhhHHHH
Q 002056 129 NGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG-------HSAVQAYLL 183 (974)
Q Consensus 129 gGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FG-------hs~~~p~ll 183 (974)
-|..++.++-.-..+..+|..|.+++.+++...+. ++-.|+| ++=+||..+
T Consensus 117 --ry~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~ 174 (682)
T PHA03393 117 --RYNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECF 174 (682)
T ss_pred --EecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHH
Confidence 24566667777788999999999999999998763 2445555 677888876
No 27
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=36.34 E-value=62 Score=30.01 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred EEEEEecccCCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHH
Q 002056 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (974)
Q Consensus 41 ~V~lvpHSH~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 120 (974)
+|.=+|=.|.|.--+.....-|. ++.+++-.|+..+.... .+|| ..-|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~~---------~~arvIg~vl~~~~~~i------------~D~f------~~~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEFQ---------KAARVIGEVLGHSDQGI------------GDWF------LEYRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCcccc---------HHHHHHHHHHHhcCcCC------------ChHH------HHHHHHHHH
Confidence 35556778888888876555543 67788888877753221 1333 225899999
Q ss_pred hCCCEEEEcceeeeec
Q 002056 121 GSGQLEFINGGMCMHD 136 (974)
Q Consensus 121 ~~Grle~vgGgwv~~D 136 (974)
++|+||+.|-.-.|.+
T Consensus 93 ~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMRH 108 (111)
T ss_pred HCCCEEEecCCCcccc
Confidence 9999999986555543
No 28
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=34.68 E-value=30 Score=33.32 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcc
Q 002056 73 CVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFING 130 (974)
Q Consensus 73 ~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgG 130 (974)
....-+..|-+.|.++|.+.-+..|++= ...-..+.|.++|++|||++...
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~e-------~tgVs~~~I~~~IreGRL~~~~~ 77 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIVE-------ETGVSEKLILKFIREGRLQLKHF 77 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHH-------HHCcCHHHHHHHHHcCCeeccCC
Confidence 4567788889999999997766655432 23333478999999999998753
No 29
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=30.53 E-value=85 Score=33.05 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred CCCCCceEEEEEeccc------CCCccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHh
Q 002056 34 GIVPGKLNVHLVAHTH------DDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDE 107 (974)
Q Consensus 34 ~~~~~~~~V~lvpHSH------~D~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~ 107 (974)
..-++.-+|++|-..- .=--|-+|.-=.- +....+--+-.++.-+++=|...|+.+++.-|+.-...
T Consensus 146 ~~iPesGkI~lv~~~~~~~~~~V~~~~~~tlfLr~-------~~~~~rGWlldi~~cid~i~~~~FtL~diY~Fe~~L~~ 218 (254)
T PF06044_consen 146 SKIPESGKIFLVKNGQIIPPEEVLEQWQKTLFLRT-------QNIESRGWLLDIMKCIDKIPKNEFTLDDIYAFEDELQI 218 (254)
T ss_dssp GGS-GGG-EEEEETTEE--HHHHHHHHHHGGGGGG-------S-HHHHHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHH
T ss_pred ccCCCcceEEEEeCCeEcCHHHHHHHHHHHHHHHh-------ccccccchHHHHHHHHHhcCccceeHHHHHHHHHHHHH
Confidence 3356677788775432 2223444332100 01234455666777777888899999999988888888
Q ss_pred cCHH-------HHHHHHHHHhCCCEEEEccee
Q 002056 108 QSEA-------MQHEVKQLVGSGQLEFINGGM 132 (974)
Q Consensus 108 ~~p~-------~~~~vk~lV~~Grle~vgGgw 132 (974)
.+|. .|.+++-|=..|-|||+|-|-
T Consensus 219 ~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 250 (254)
T PF06044_consen 219 KYPNNNHIKAKIRQQLQILRDKGIIEFLGRGR 250 (254)
T ss_dssp HSTT-S-HHHHHHHHHHHHHHTTSEEE-STTE
T ss_pred hCCCCCChhHHHHHHHHHHhhCCceEEecCCc
Confidence 7774 355566666789999998763
No 30
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=26.38 E-value=4.6e+02 Score=29.76 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=23.7
Q ss_pred CCceEEecceEEEEEeCCCCCeEEEEecC
Q 002056 599 KSTVEVGQGNLKLIFSSDKSKPINYINNK 627 (974)
Q Consensus 599 ~~~~~ieN~~~~v~~~~~~G~l~si~dk~ 627 (974)
...++|+|+.++++|+...|.|.++.-|+
T Consensus 73 ~~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 73 AKRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CCeEEEECCeEEEEEeCCCceeeeecccc
Confidence 34689999999999997677898887653
No 31
>PRK10148 hypothetical protein; Provisional
Probab=26.26 E-value=24 Score=34.49 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.8
Q ss_pred CceeeecCCCCCChhhHH
Q 002056 164 PRIGWQIDPFGHSAVQAY 181 (974)
Q Consensus 164 p~~~w~~D~FGhs~~~p~ 181 (974)
++.||..|+||++|++-.
T Consensus 123 ~~~g~v~D~fGi~W~l~~ 140 (147)
T PRK10148 123 HGFGKVTDKFGVPWMINV 140 (147)
T ss_pred hccEEEECCCCCEEEEEe
Confidence 467999999999997643
No 32
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=25.71 E-value=4.4e+02 Score=27.67 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=79.7
Q ss_pred CccchhhheeeeccCCcchhhHHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcc
Q 002056 52 VGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFING 130 (974)
Q Consensus 52 ~gWl~t~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgG 130 (974)
.--..|||+.+. .. ....+++.|+++-- .+|-..+ .|.+..|+..+++. ++|.- +-+=
T Consensus 65 k~v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~~~~---~~Ghe-ig~H 123 (267)
T COG0726 65 KAVALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG------SWIERNPDLVKRIA---EAGHE-IGNH 123 (267)
T ss_pred CeEEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHHHHH---hccCe-ehhC
Confidence 344568888775 21 56677888887643 4566555 44566775554444 47765 6778
Q ss_pred eeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCc
Q 002056 131 GMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFD 190 (974)
Q Consensus 131 gwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~ 190 (974)
+|--.+....+.+.+..++...+..+.+..|..|+ |.--|.|. +...-.+. +..|+.
T Consensus 124 ~~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~-~~~g~~ 181 (267)
T COG0726 124 GYDHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALA-RRLGYR 181 (267)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHH-HhCCCc
Confidence 88777777778888888999999999999999833 45556665 46667777 788886
No 33
>PRK12465 xylose isomerase; Provisional
Probab=24.01 E-value=1.4e+02 Score=34.21 Aligned_cols=65 Identities=8% Similarity=0.067 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHhhcccCC--CeEEEeeccCCCccchHHHHHHHHHHHHHHhc---CCCeEEEEcChhhhHH
Q 002056 264 NVQDRVNDFVAAAISQANITRT--NHIMWTMGTDFKYQYARTWFRQLDKFIHYVNM---DGRVNALYSTPSIYTD 333 (974)
Q Consensus 264 nv~~~~~~~~~~~~~~~~~~~t--~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~---~~~~~i~~sT~~~Yf~ 333 (974)
.++.|++...+-+.+....|-+ ..=++|.|.+.+-. .+|++++++++.+ ...+++.++|+..|.+
T Consensus 86 ~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~E~-----~~nld~iv~~~k~~~~~tGikllw~TaNlFs~ 155 (445)
T PRK12465 86 RAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDADDIGEY-----ESNLKHMVGIAKQRQADTGIKLLWGTANLFSH 155 (445)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeccccccCCCCCCHHHH-----HHHHHHHHHHHHHHhhhhCceeeeeccccccC
Confidence 4566777777777776544422 23356776554433 3789998888774 3478888888877744
No 34
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=23.50 E-value=4.6e+02 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=19.9
Q ss_pred eEEecceEEEEEeCCCCCeEEEEec
Q 002056 602 VEVGQGNLKLIFSSDKSKPINYINN 626 (974)
Q Consensus 602 ~~ieN~~~~v~~~~~~G~l~si~dk 626 (974)
++|||+.++++|+...|.|.++.-|
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcC
Confidence 6899999999999788999988754
No 35
>PF13289 SIR2_2: SIR2-like domain
Probab=21.02 E-value=4.8e+02 Score=24.50 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=52.4
Q ss_pred EEEechhHHHHHHHhcCHHHHHHHHHHHhCCCEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCC
Q 002056 93 FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDP 172 (974)
Q Consensus 93 F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~ 172 (974)
++..+..|. +.+ ...+...+.++.+.++.-+-|+ ||-+.|+. |++++ +++.+..+..++-.|.+.+
T Consensus 59 ~vlt~~~y~-~~~-~~~~~~~~~l~~~l~~~~~lfi--Gys~~D~~-------i~~~l---~~~~~~~~~~~~~~~~v~~ 124 (143)
T PF13289_consen 59 IVLTEDDYE-EYY-SSNPWFPNFLRSLLRSKTLLFI--GYSFNDPD-------IRQLL---RSALENSGKSRPRHYIVIP 124 (143)
T ss_pred EEEcHHHHH-HHh-hhHHHHHHHHHHHHcCCCEEEE--EECCCCHH-------HHHHH---HHHHHhccCCCccEEEEEc
Confidence 455554442 333 3467778889999988888788 55566753 44444 3355666664444455565
Q ss_pred CCCChhhHHHHhhhcCCc
Q 002056 173 FGHSAVQAYLLGSEVGFD 190 (974)
Q Consensus 173 FGhs~~~p~ll~~~~G~~ 190 (974)
-.-......++ +..|++
T Consensus 125 ~~~~~~~~~~~-~~~~i~ 141 (143)
T PF13289_consen 125 DPDDENEREFL-EKYGIE 141 (143)
T ss_pred CCchHHHHHHH-HHcCCE
Confidence 55567777777 788876
No 36
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=20.70 E-value=2.3e+02 Score=28.08 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHhcCHHHHHHHHHHHhCCCEEEE-cceeee-ecccCCChHHHHHHHHHHHHHHHHHcCCC
Q 002056 103 RWWDEQSEAMQHEVKQLVGSGQLEFI-NGGMCM-HDEAVTHYIDMIDQTTLGHRFIKNEFGVT 163 (974)
Q Consensus 103 ~w~~~~~p~~~~~vk~lV~~Grle~v-gGgwv~-~Dea~~~~es~Irql~~G~~~l~~~fG~~ 163 (974)
+.|....++.++.|++.++.|++++. .=-+.. ....+.=-+.+++++....+.+++.+|..
T Consensus 39 ~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~~~ 101 (159)
T PF03755_consen 39 RELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVELRINEELAKAYYEALKELAEELGLA 101 (159)
T ss_pred HHHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCCcccCHHHHHHHHHHHHHHHHHcCCC
Confidence 45566778899999999999999873 222222 12223335778999999999999999874
No 37
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=20.62 E-value=18 Score=33.34 Aligned_cols=27 Identities=19% Similarity=0.628 Sum_probs=23.8
Q ss_pred HHHHhcCHHHHHHHHHHHhCCCEEEEccee
Q 002056 103 RWWDEQSEAMQHEVKQLVGSGQLEFINGGM 132 (974)
Q Consensus 103 ~w~~~~~p~~~~~vk~lV~~Grle~vgGgw 132 (974)
.||+. ...+.+++.+|+.|++ ++.|||
T Consensus 75 ~~W~~--~~~R~~~~rll~~a~~-l~~gGY 101 (106)
T PF10074_consen 75 DEWKD--SSLRRRVRRLLRRARA-LMEGGY 101 (106)
T ss_pred ccccC--hHHHHHHHHHHHHHHH-HHHhhH
Confidence 57864 7789999999999999 899998
Done!