BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002057
(974 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CWV|A Chain A, Crystal Structure Of Invasin: A Bacterial Integrin-Binding
Protein
Length = 492
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 404 LITHEIVVQLLDSYSNPVLSQQSGLKLEI-TSMNSSGFSSWMFVDNNDGSYSGHYLAMDV 462
L+ I ++L D+Y +P Q+G + T++ + G + D+NDG+YS + +
Sbjct: 123 LMASTITLELKDTYGDP----QAGANVAFDTTLGNMG----VITDHNDGTYSAPLTSTTL 174
Query: 463 GTYEMCVSYDGTNFSLCPFLVNVYSSQYFPKA 494
G + V DG FS+ VN +++ P A
Sbjct: 175 GVATVTVKVDGAAFSVPSVTVN-FTADPIPDA 205
>pdb|2DIB|A Chain A, Solution Structure Of The 11th Filamin Domain From Human
Filamin-B
Length = 128
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 422 LSQQSGLKLEITSMNSSGFSSWMFV-DNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCP 480
L+Q G ++ N SG S+ FV DN DG+Y Y + G + + V+YD P
Sbjct: 51 LTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSP 110
Query: 481 FLVNV 485
F V V
Sbjct: 111 FKVAV 115
>pdb|2EE9|A Chain A, Solution Structure Of The 16th Filamin Domain From Human
Filamin-B
Length = 95
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 429 KLEITS---MNSSGFSSWMFVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCP--FLV 483
K EIT M S ++ VDN DG+ + Y +VG +EM + Y G++ P F V
Sbjct: 29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFYV 88
Query: 484 N 484
N
Sbjct: 89 N 89
>pdb|2DIC|A Chain A, Solution Structure Of The 12th Filamin Domain From Human
Filamin-B
Length = 105
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 447 DNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNV 485
DN DGS S Y+ G Y++ ++Y G + PF V V
Sbjct: 60 DNKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVPV 98
>pdb|2D7N|A Chain A, Solution Structure Of The 16th Filamin Domain From Human
Filamin C
Length = 93
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 420 PVLSQQSGLKLEITSMNSSGFSSWMFVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLC 479
P Q+ L E+ M S + DN DG+ + Y + G ++M + YDG +
Sbjct: 16 PFAVQKGELTGEV-RMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGS 74
Query: 480 P--FLVNVYSSQY 490
P F V+ +S++
Sbjct: 75 PLQFYVDAINSRH 87
>pdb|2E9J|A Chain A, Solution Structure Of The 14th Filamin Domain From Human
Filamin-B
Length = 119
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 447 DNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLV 483
DN DG+Y+ Y+ G Y + V+Y G + L P+ +
Sbjct: 74 DNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRI 110
>pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|K Chain K, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|L Chain L, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1SMY|A Chain A, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1SMY|B Chain B, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1SMY|K Chain K, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1SMY|L Chain L, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1ZYR|A Chain A, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|1ZYR|B Chain B, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|1ZYR|K Chain K, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|1ZYR|L Chain L, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|2A68|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A68|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A68|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A68|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A69|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A69|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A69|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A69|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A6E|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6E|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6E|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6E|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6H|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2A6H|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2A6H|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2A6H|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2CW0|A Chain A, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2CW0|B Chain B, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2CW0|K Chain K, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2CW0|L Chain L, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2BE5|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2BE5|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2BE5|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2BE5|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2O5I|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5I|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5I|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5I|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5J|A Chain A, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2O5J|B Chain B, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2O5J|K Chain K, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2O5J|L Chain L, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2PPB|A Chain A, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|2PPB|B Chain B, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|2PPB|K Chain K, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|2PPB|L Chain L, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|3DXJ|A Chain A, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3DXJ|B Chain B, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3DXJ|K Chain K, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3DXJ|L Chain L, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3EQL|A Chain A, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3EQL|B Chain B, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3EQL|K Chain K, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3EQL|L Chain L, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3AOH|A Chain A, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|B Chain B, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|F Chain F, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|G Chain G, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|K Chain K, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|L Chain L, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOI|A Chain A, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|B Chain B, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|F Chain F, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|G Chain G, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|K Chain K, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|L Chain L, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|4G7H|A Chain A, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7H|B Chain B, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7H|K Chain K, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7H|L Chain L, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7O|A Chain A, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7O|B Chain B, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7O|K Chain K, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7O|L Chain L, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7Z|A Chain A, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4G7Z|B Chain B, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4G7Z|K Chain K, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4G7Z|L Chain L, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4GZY|A Chain A, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
pdb|4GZY|B Chain B, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
pdb|4GZZ|A Chain A, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
pdb|4GZZ|B Chain B, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
Length = 315
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 41 EVLDSSLHFKV--EPGRLNPSVCVASWMGLINEFEAGNKDRIMILPKDA 87
E+++ LH E GRLN V V +G + + G KDRI +P DA
Sbjct: 121 EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDA 169
>pdb|2D7M|A Chain A, Solution Structure Of The 14th Filamin Domain From Human
Filamin C
Length = 115
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 26/117 (22%)
Query: 373 NGGHSFTKEVTASDVNMTLSGV-----VKFTPKVAKLITHEIVVQLLDSYSNPVLSQQSG 427
+G H +K V AS + SG+ V+FT + VQ+LD P +++
Sbjct: 6 SGAHDASK-VRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKP---KKAN 61
Query: 428 LKLEITSMNSSGFSSWMFVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVN 484
++ DN DG+Y+ YL G Y + + Y G PF ++
Sbjct: 62 IR-----------------DNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH 101
>pdb|2DMB|A Chain A, Solution Structure Of The 15th Filamin Domain From Human
Filamin-B
Length = 124
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 446 VDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLV 483
++N DG+Y Y A GTY + V + G + PF V
Sbjct: 62 IENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTV 99
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 642 MSSGLSVRIGDGYQKEL-----IIEGSVEIISMALQSIQYLGNENFYGEDTIRVSARNKN 696
++ +SV +GD Y K ++ G+ +IS+ L++ + +N GE + ++ + KN
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222
>pdb|2K7P|A Chain A, Filamin A Ig-Like Domains 16-17
Length = 188
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 405 ITHEIVVQLLDSYSNPVLSQQSGLKLEITSMNSSGFSSWMFVDNNDGSYSGHYLAMDVGT 464
+TH +V + N + + GL L I + + S DN DG+ S YL + G
Sbjct: 107 LTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKAEISC---TDNQDGTCSVSYLPVLPGD 163
Query: 465 YEMCVSYDGTNFSLCPFLVNV 485
Y + V Y+ + PF V
Sbjct: 164 YSILVKYNEQHVPGSPFTARV 184
>pdb|2K7Q|A Chain A, Filamin A Ig-Like Domains 18-19
Length = 191
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 129 GYIIIEFILMKAGNFSLHVEAGNQTLNGSPLPFKVNPGPVDVSNCVAKWKYEVAAWQIFS 188
G++ I F+ + G +HV+ Q + SP+P ++ + ++ V + F
Sbjct: 55 GHVGISFVPKETGEHLVHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQGLHEGHTFE 114
Query: 189 KMEIFIHQLDQ-YGNLVPGFYAFDADVVEKETNLSI---PVADLQFEEVAPGVQLFSYTI 244
E I D YG L +LSI D+ E++ G +Y
Sbjct: 115 PAEFIIDTRDAGYGGL----------------SLSIEGPSKVDINTEDLEDGTCRVTYCP 158
Query: 245 EESGNFLLTISDEKHNKSVSNMPYTYTV 272
E GN+++ I + ++ V P++ V
Sbjct: 159 TEPGNYIINI--KFADQHVPGSPFSVKV 184
>pdb|2BP3|A Chain A, Crystal Structure Of Filamin A Domain 17 And Gpib Alpha
Cytoplasmic Domain Complex
pdb|2BP3|B Chain B, Crystal Structure Of Filamin A Domain 17 And Gpib Alpha
Cytoplasmic Domain Complex
Length = 97
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 405 ITHEIVVQLLDSYSNPVLSQQSGLKLEITSMNSSGFSSWMFVDNNDGSYSGHYLAMDVGT 464
+TH +V + N + + GL L I + + S DN DG+ S YL + G
Sbjct: 16 LTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKAEISC---TDNQDGTCSVSYLPVLPGD 72
Query: 465 YEMCVSYDGTNFSLCPFLVNV 485
Y + V Y+ + PF V
Sbjct: 73 YSILVKYNEQHVPGSPFTARV 93
>pdb|2EE6|A Chain A, Solution Structure Of The 21th Filamin Domain From Human
Filamin-B
Length = 105
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 445 FVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNV 485
F D+ +GS Y+A + G YE+ + ++ + P+LV V
Sbjct: 58 FDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVPV 98
>pdb|2BRQ|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Integrin Beta7 Cytoplasmic Tail Peptide
pdb|2BRQ|B Chain B, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Integrin Beta7 Cytoplasmic Tail Peptide
pdb|2JF1|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Integrin Beta2 Cytoplasmic Tail Peptide
Length = 97
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 445 FVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNVYS 487
F D DGS Y+ + G YE+ V ++ + PF+V V S
Sbjct: 53 FEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVAS 95
>pdb|3ISW|A Chain A, Crystal Structure Of Filamin-A Immunoglobulin-Like Repeat
21 An N-Terminal Peptide Of Cftr
pdb|3ISW|B Chain B, Crystal Structure Of Filamin-A Immunoglobulin-Like Repeat
21 An N-Terminal Peptide Of Cftr
Length = 99
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 445 FVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNVYS 487
F D DGS Y+ + G YE+ V ++ + PF+V V S
Sbjct: 55 FEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVAS 97
>pdb|2W0P|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Migfilin Peptide
pdb|2W0P|B Chain B, Crystal Structure Of The Filamin A Repeat 21 Complexed
With The Migfilin Peptide
Length = 94
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 445 FVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNVYS 487
F D DGS Y+ + G YE+ V ++ + PF+V V S
Sbjct: 50 FEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVAS 92
>pdb|2K9U|A Chain A, Solution Nmr Structure Of The Filamin-Migfilin Complex
Length = 119
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 445 FVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNVYS 487
F D DGS Y+ + G YE+ + ++ + PF+V V S
Sbjct: 65 FEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVAS 107
>pdb|3KCS|A Chain A, Crystal Structure Of Pamcherry1 In The Dark State
pdb|3KCT|A Chain A, Crystal Structure Of Pamcherry1 In The Photoactivated
State
Length = 234
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 778 PAELINSTELKLKTSFQWEPLQTY-----VTISKHFTVKAS----GVRFRGT-------- 820
PA++ + +L F+WE + + VT+++ +++ V+ RGT
Sbjct: 79 PADIPDYFKLSFPEGFKWERVMKFEDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPV 138
Query: 821 ----VNDCNSIMQQLFYQSG--EGDDVLKVKLNDMGHYGCRPDCTEKISLPLFAEATVNL 874
++ ++++ + G +G+ +VKL D GHY T K P+ N+
Sbjct: 139 MQKKTMGWEALSERMYPEDGALKGEVKPRVKLKDGGHYDAEVKTTYKAKKPVQLPGAYNV 198
Query: 875 IRRRPMSS 882
R+ ++S
Sbjct: 199 NRKLDITS 206
>pdb|2J3S|A Chain A, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
pdb|2J3S|B Chain B, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
Length = 288
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 445 FVDNNDGSYSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNVYS 487
F D DGS Y+ + G YE+ V ++ + PF+V V S
Sbjct: 244 FEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVAS 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,812,811
Number of Sequences: 62578
Number of extensions: 1096508
Number of successful extensions: 2737
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2704
Number of HSP's gapped (non-prelim): 44
length of query: 974
length of database: 14,973,337
effective HSP length: 108
effective length of query: 866
effective length of database: 8,214,913
effective search space: 7114114658
effective search space used: 7114114658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)