Query 002057
Match_columns 974
No_of_seqs 411 out of 1476
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0518 Actin-binding cytoskel 100.0 1.6E-42 3.4E-47 408.7 41.8 425 6-485 404-941 (1113)
2 KOG0518 Actin-binding cytoskel 100.0 2.2E-40 4.8E-45 390.6 37.4 367 10-434 710-1108(1113)
3 smart00557 IG_FLMN Filamin-typ 99.7 8E-16 1.7E-20 141.6 13.2 92 58-165 1-92 (93)
4 PF00630 Filamin: Filamin/ABP2 99.7 6.5E-16 1.4E-20 144.0 11.4 101 276-379 1-101 (101)
5 smart00557 IG_FLMN Filamin-typ 99.6 1.5E-15 3.3E-20 139.8 12.5 92 279-384 1-92 (93)
6 PF00630 Filamin: Filamin/ABP2 99.6 4.1E-15 8.8E-20 138.7 12.5 98 56-160 2-101 (101)
7 TIGR01965 VCBS_repeat VCBS rep 98.2 8.4E-06 1.8E-10 75.2 9.0 70 511-584 4-87 (99)
8 TIGR01965 VCBS_repeat VCBS rep 97.8 0.00019 4E-09 66.5 10.8 49 670-721 33-91 (99)
9 PRK14081 triple tyrosine motif 97.5 0.11 2.3E-06 63.5 30.1 289 18-371 147-460 (667)
10 PRK14081 triple tyrosine motif 97.4 0.11 2.3E-06 63.4 29.5 295 17-371 244-556 (667)
11 KOG4289 Cadherin EGF LAG seven 97.3 1.1 2.3E-05 57.7 42.1 206 477-717 460-683 (2531)
12 KOG4289 Cadherin EGF LAG seven 96.6 0.85 1.8E-05 58.5 27.0 231 479-749 358-621 (2531)
13 cd00031 CA Cadherin repeat dom 95.8 2 4.4E-05 44.3 21.8 86 499-584 4-103 (199)
14 PF13584 BatD: Oxygen toleranc 95.2 2 4.3E-05 51.6 22.1 146 16-168 72-259 (484)
15 cd00031 CA Cadherin repeat dom 95.2 1.5 3.3E-05 45.2 18.7 121 457-577 62-198 (199)
16 PF13584 BatD: Oxygen toleranc 95.1 10 0.00023 45.4 28.0 39 129-167 73-114 (484)
17 COG2373 Large extracellular al 94.1 2.8 6.1E-05 56.8 21.2 124 71-207 404-532 (1621)
18 PF13753 SWM_repeat: Putative 92.3 5.5 0.00012 45.1 17.3 63 516-580 72-140 (317)
19 smart00736 CADG Dystroglycan-t 91.8 1.2 2.6E-05 41.2 9.4 45 669-713 52-97 (97)
20 smart00736 CADG Dystroglycan-t 91.5 2.6 5.7E-05 39.0 11.3 79 500-579 8-94 (97)
21 KOG1948 Metalloproteinase-rela 89.8 66 0.0014 40.6 34.2 291 20-371 157-453 (1165)
22 PF13750 Big_3_3: Bacterial Ig 89.6 20 0.00044 36.4 16.6 41 544-584 7-50 (158)
23 PF01835 A2M_N: MG2 domain; I 89.0 2 4.3E-05 39.7 8.1 74 70-150 9-86 (99)
24 KOG1428 Inhibitor of type V ad 88.1 1.7 3.6E-05 55.9 8.7 100 56-165 1981-2141(3738)
25 PF13754 Big_3_4: Bacterial Ig 88.1 1.3 2.9E-05 36.5 5.6 44 538-581 10-54 (54)
26 PF02369 Big_1: Bacterial Ig-l 87.7 3.5 7.6E-05 38.5 8.9 70 74-153 21-92 (100)
27 PF13753 SWM_repeat: Putative 85.3 7.8 0.00017 43.8 11.9 33 551-583 11-43 (317)
28 PF13750 Big_3_3: Bacterial Ig 81.7 22 0.00048 36.1 12.2 32 546-577 117-148 (158)
29 TIGR03660 T1SS_rpt_143 T1SS-14 77.1 8 0.00017 38.4 7.1 31 554-584 87-117 (137)
30 smart00634 BID_1 Bacterial Ig- 77.0 18 0.00038 33.1 9.0 67 76-151 18-84 (92)
31 KOG1948 Metalloproteinase-rela 76.1 2.3E+02 0.005 36.1 37.7 28 126-155 153-180 (1165)
32 KOG1219 Uncharacterized conser 76.0 3.7E+02 0.0081 38.4 39.6 170 406-581 862-1055(4289)
33 TIGR00864 PCC polycystin catio 74.3 4.4E+02 0.0095 38.4 53.2 26 551-577 1567-1592(2740)
34 PF09134 Invasin_D3: Invasin, 73.2 26 0.00056 32.8 8.8 77 189-274 22-98 (99)
35 PF02369 Big_1: Bacterial Ig-l 72.6 28 0.00061 32.4 9.3 69 295-371 22-92 (100)
36 TIGR03503 conserved hypothetic 72.6 1.9E+02 0.0042 33.6 21.6 125 233-384 168-302 (374)
37 PF02494 HYR: HYR domain; Int 72.2 5.7 0.00012 35.3 4.4 26 551-576 56-81 (81)
38 PF13115 YtkA: YtkA-like 71.6 21 0.00045 31.9 7.9 62 191-254 23-85 (86)
39 PF00028 Cadherin: Cadherin do 71.5 58 0.0013 29.2 11.0 78 499-576 3-92 (93)
40 PF01835 A2M_N: MG2 domain; I 71.5 28 0.00061 31.9 9.0 70 294-368 13-86 (99)
41 PF05895 DUF859: Siphovirus pr 67.7 3.2E+02 0.0069 34.1 20.1 37 679-716 293-331 (624)
42 PF13115 YtkA: YtkA-like 66.9 40 0.00086 30.1 8.7 66 72-147 17-85 (86)
43 PHA03105 EEV glycoprotein; Pro 66.3 12 0.00025 37.4 5.3 69 889-959 2-79 (188)
44 smart00112 CA Cadherin repeats 65.0 52 0.0011 28.5 9.0 61 521-581 10-78 (79)
45 PF09134 Invasin_D3: Invasin, 61.9 72 0.0016 29.9 9.3 77 76-164 21-97 (99)
46 PF12273 RCR: Chitin synthesis 59.9 5.5 0.00012 39.0 1.9 14 898-911 6-19 (130)
47 TIGR03660 T1SS_rpt_143 T1SS-14 59.2 82 0.0018 31.3 9.9 58 443-504 58-127 (137)
48 TIGR03096 nitroso_cyanin nitro 56.6 42 0.00092 33.2 7.3 33 235-267 99-131 (135)
49 PF10873 DUF2668: Protein of u 55.3 21 0.00046 35.3 4.9 40 884-924 55-95 (155)
50 PF06312 Neurexophilin: Neurex 55.3 40 0.00086 36.2 7.4 46 426-471 70-115 (219)
51 PF06312 Neurexophilin: Neurex 54.9 54 0.0012 35.2 8.4 47 206-255 68-114 (219)
52 smart00634 BID_1 Bacterial Ig- 53.1 59 0.0013 29.6 7.4 66 406-473 19-84 (92)
53 PRK13718 conjugal transfer pro 52.7 7.8 0.00017 34.2 1.4 54 871-925 18-75 (84)
54 PF12245 Big_3_2: Bacterial Ig 52.2 40 0.00087 28.4 5.6 41 542-582 13-54 (60)
55 TIGR03503 conserved hypothetic 50.2 2.3E+02 0.0049 33.0 12.9 121 15-163 169-300 (374)
56 PF13754 Big_3_4: Bacterial Ig 49.7 51 0.0011 27.1 5.8 39 670-708 10-50 (54)
57 KOG1428 Inhibitor of type V ad 49.2 57 0.0012 43.2 8.3 139 9-158 2098-2244(3738)
58 KOG1219 Uncharacterized conser 48.8 1.1E+03 0.024 34.3 35.2 69 681-749 2040-2118(4289)
59 PF05751 FixH: FixH; InterPro 48.1 1.2E+02 0.0027 29.8 9.5 73 298-380 69-141 (146)
60 PF05345 He_PIG: Putative Ig d 43.1 48 0.001 26.8 4.5 30 668-697 19-49 (49)
61 TIGR03096 nitroso_cyanin nitro 41.5 1.8E+02 0.004 28.9 9.1 31 127-157 98-130 (135)
62 PF13473 Cupredoxin_1: Cupredo 41.3 55 0.0012 30.4 5.4 21 235-255 73-93 (104)
63 PF13620 CarboxypepD_reg: Carb 40.9 1E+02 0.0022 26.8 6.8 46 103-154 16-61 (82)
64 PF07705 CARDB: CARDB; InterP 39.7 1.2E+02 0.0026 27.2 7.4 72 71-151 14-85 (101)
65 KOG0544 FKBP-type peptidyl-pro 39.0 1.5E+02 0.0033 27.6 7.3 64 130-203 22-86 (108)
66 PF07495 Y_Y_Y: Y_Y_Y domain; 37.9 63 0.0014 27.0 4.8 18 239-256 30-47 (66)
67 PF02494 HYR: HYR domain; Int 36.9 1.4E+02 0.0029 26.4 7.0 32 676-707 48-81 (81)
68 PF13860 FlgD_ig: FlgD Ig-like 33.1 3.5E+02 0.0075 24.0 9.2 45 103-149 26-77 (81)
69 PF07495 Y_Y_Y: Y_Y_Y domain; 33.1 48 0.001 27.7 3.3 18 132-149 30-47 (66)
70 PF07523 Big_3: Bacterial Ig-l 31.4 75 0.0016 27.1 4.2 44 102-153 17-60 (67)
71 PF04234 CopC: CopC domain; I 31.2 72 0.0016 29.5 4.3 56 105-161 36-96 (97)
72 PF00116 COX2: Cytochrome C ox 30.8 2.6E+02 0.0057 27.0 8.3 71 183-272 49-119 (120)
73 PF01708 Gemini_mov: Geminivir 30.7 31 0.00068 31.4 1.7 35 888-922 37-71 (91)
74 KOG0544 FKBP-type peptidyl-pro 30.5 2.4E+02 0.0052 26.3 7.2 62 16-91 20-86 (108)
75 smart00112 CA Cadherin repeats 30.0 93 0.002 26.8 4.7 31 684-714 45-78 (79)
76 cd00146 PKD polycystic kidney 29.0 1.2E+02 0.0025 26.5 5.2 35 540-576 47-81 (81)
77 PF15099 PIRT: Phosphoinositid 26.8 27 0.00059 33.8 0.7 14 897-910 85-98 (129)
78 PF05404 TRAP-delta: Transloco 26.6 3.1E+02 0.0068 28.2 8.2 21 347-367 78-102 (167)
79 PF00017 SH2: SH2 domain; Int 26.5 2E+02 0.0043 24.8 6.1 29 344-372 19-47 (77)
80 COG4856 Uncharacterized protei 26.0 1.1E+03 0.024 27.5 13.2 22 252-273 54-75 (403)
81 PF10577 UPF0560: Uncharacteri 25.3 30 0.00066 43.3 0.9 50 886-943 277-327 (807)
82 PF12273 RCR: Chitin synthesis 25.1 58 0.0013 31.9 2.7 27 899-925 3-29 (130)
83 PF00017 SH2: SH2 domain; Int 24.6 1.1E+02 0.0024 26.4 4.2 26 126-151 19-44 (77)
84 PF06016 Reovirus_L2: Reovirus 24.5 3.7E+02 0.0079 36.0 10.1 66 124-194 1082-1147(1289)
85 TIGR02866 CoxB cytochrome c ox 24.5 3.2E+02 0.0069 28.8 8.3 71 184-274 121-192 (201)
86 PF13473 Cupredoxin_1: Cupredo 23.8 2E+02 0.0044 26.6 6.1 21 347-367 74-94 (104)
87 PF15050 SCIMP: SCIMP protein 23.6 43 0.00094 32.1 1.4 13 900-913 21-33 (133)
88 PF12245 Big_3_2: Bacterial Ig 23.1 3.2E+02 0.007 22.9 6.5 28 673-700 12-39 (60)
89 PF05393 Hum_adeno_E3A: Human 22.8 58 0.0013 29.6 1.9 12 900-911 43-54 (94)
90 PF05345 He_PIG: Putative Ig d 21.9 2E+02 0.0042 23.3 4.7 27 539-565 22-49 (49)
91 PF01102 Glycophorin_A: Glycop 21.5 50 0.0011 32.2 1.4 13 899-911 75-87 (122)
92 PF05083 LST1: LST-1 protein; 21.5 83 0.0018 27.4 2.5 36 901-936 5-40 (74)
93 KOG2996 Rho guanine nucleotide 20.2 70 0.0015 38.5 2.4 35 229-263 700-734 (865)
94 PRK10301 hypothetical protein; 20.1 1.8E+02 0.0038 28.4 4.9 21 137-157 95-118 (124)
No 1
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=100.00 E-value=1.6e-42 Score=408.73 Aligned_cols=425 Identities=18% Similarity=0.230 Sum_probs=311.7
Q ss_pred eEEEEEEecCCceEEEEEEcCcceeEEEEEEECCeecCCCCeEEEEecCCCCCCeeEEecCCccceeEeCCeeEEEEEec
Q 002057 6 HLFILISLLASTLSSASAAELAIGLFNVIIKDDLFEVLDSSLHFKVEPGRLNPSVCVASWMGLINEFEAGNKDRIMILPK 85 (974)
Q Consensus 6 ~~~~~~~~~~~~~~~v~Y~P~~~G~h~v~V~~~g~~I~gSPf~v~V~~g~~~~s~~~a~g~g~~~~~~aG~~a~f~I~~r 85 (974)
|.-++...=-..++.++|.|..+|.|.|.|+|+|++|++|||++.-.+ ++++|....+. .++.|+++.|.|+++
T Consensus 404 ~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~gd~i~gSPf~~ra~~---dask~~~~~~i---~~~vg~~~~~~vdak 477 (1113)
T KOG0518|consen 404 KEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYGGDPIPGSPFTARAYP---DASKEVLVPPI---NAQVGKEANFVVDAK 477 (1113)
T ss_pred eeeEEEecCCCceEEEEEcCCCCCceEEEEEECCcccCCCceEEEecc---CccceEecCCC---cccccceeeeEeehh
Confidence 444444433345999999999999999999999999999999998876 78888665542 267889999988877
Q ss_pred cCCCCccc--------------------------ccccccccceEEEEEEe-----------------------------
Q 002057 86 DAFGNNVT--------------------------STSEELSSFNFTVSALY----------------------------- 110 (974)
Q Consensus 86 Da~gn~i~--------------------------~~~~~~~~~~~~V~v~~----------------------------- 110 (974)
-+.-..+. ..+..++.+.+.+...+
T Consensus 478 ~ag~g~~~~~~~~pdn~n~~~~v~~~~dg~~~iv~ta~~~~~~~i~v~f~ge~vp~sp~~~~a~~~~~~~~~~r~v~e~h 557 (1113)
T KOG0518|consen 478 AAGAGPVTCTVVTPDNRNVPADVQKNGDGTFDIVFTAQDPGTYTIDVRFGGEHVPDSPFIVSASAGIGTAVAARWVTEEH 557 (1113)
T ss_pred hccCCCceeEEeccccCCCCceeeeccCcceeeEeccCCCCcceEEEEECCeeCCCCceeEEEecccccccccccccccc
Confidence 44322100 00000000111110000
Q ss_pred ------------------------------------------CCCCc-------------ccceeEeceeCCCceEEEEE
Q 002057 111 ------------------------------------------ANGSA-------------LTPNITNMGLNEVGYIIIEF 135 (974)
Q Consensus 111 ------------------------------------------~~g~~-------------~~~~~~~~~~n~dGt~~v~Y 135 (974)
.+|+. .+..+ .|.+|+||+|.++|
T Consensus 558 ~v~v~~~~~~~~vi~~~v~k~~l~~ev~~~t~k~~~~~iiDn~d~t~~v~~~~t~aiegPskaei-~c~dn~Dgt~~vsy 636 (1113)
T KOG0518|consen 558 SVEVIEQQSKTLVIPFTVQKKELAGEVNMPTGKQAKPEIIDNKDGTITVRYAPTLAIEGPSKAEI-RCYDNKDGTCSVSY 636 (1113)
T ss_pred cccccccccccccccccccccchhccccCccccccCceeeccCCCceeEEeccccccCCCCccce-eEEeCCCCcEEecc
Confidence 00100 00011 25689999999999
Q ss_pred EecCCeeEEEEEEECCeecCCCCeeEEecCCCCCCcceEEeccccceeEEeeeeeEEEEeeccccCCCCCceeeeEEEEE
Q 002057 136 ILMKAGNFSLHVEAGNQTLNGSPLPFKVNPGPVDVSNCVAKWKYEVAAWQIFSKMEIFIHQLDQYGNLVPGFYAFDADVV 215 (974)
Q Consensus 136 ~P~~~G~Y~V~V~~~~~~I~gSPf~v~V~pg~~d~s~~~~~g~~~~~~~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~ 215 (974)
+|+.||.|.|+|+++++||+||||+..|.. |.+ .-....++|+..++.|.-+.+ ++..+.|++.
T Consensus 637 ~P~vpG~y~i~V~~~~k~vpgSPF~~~Vt~---~~s-------~r~s~~~Vgs~~ev~in~~~~------~~s~ltaeI~ 700 (1113)
T KOG0518|consen 637 TPTVPGVYKIEVKFGDKHVPGSPFVALVTG---DES-------IRTSHLSVGSIHEVTINITEA------DLSVLTAEIV 700 (1113)
T ss_pred CCCCCceEEEEEEECCeeCCCCCceEEEec---ccc-------cccccceecceeeEEeecccc------CCceeEEEEE
Confidence 999999999999999999999999999973 111 012345677888888872222 3445677777
Q ss_pred ecCCCeeecccceeeEEeCCceEEEEEeeCCceeEEEEEEeCCCcccccCCCeEEEEEccccCCcceEEeccCccccccC
Q 002057 216 EKETNLSIPVADLQFEEVAPGVQLFSYTIEESGNFLLTISDEKHNKSVSNMPYTYTVFVGYCNGSSSVVNGSGLNDSVAG 295 (974)
Q Consensus 216 ~~~~~~s~p~~~~~~~~~~dG~~~vsf~P~~~G~y~v~V~~~~~~~~I~gSPf~~~V~~g~~d~skv~a~G~GL~~~~~g 295 (974)
.+ .+...|+. ++...+|.+.++|+|.|+|+|+|+|+. .|+||+||||.+.|.....|++|++++|+||..++.-
T Consensus 701 ~P-sGn~~~c~---~r~l~~g~~~itF~P~e~GeH~I~Vk~--~G~hVpgsPf~i~V~~~e~dAsk~~v~g~g~~~G~t~ 774 (1113)
T KOG0518|consen 701 DP-SGNPEPCL---VRRLPNGHDGITFTPREVGEHKINVKV--AGKHVPGSPFSIKVSESEIDASKVRVSGQGLKEGHTF 774 (1113)
T ss_pred CC-CCCcccee---eEecCCCceeEEECCCcCcceEEEEEE--cceECCCCCeEEEeccccccceeEEEecccccccccc
Confidence 65 44556665 888999999999999999999999995 4779999999999996666999999999999999999
Q ss_pred CceEEEEEEecCCCCCcccccceeEEEEEecCCCccccCCCCCceeeecCCCeEEEEEecCCCeeEEEEEEECceEecCC
Q 002057 296 ETAHFSVYLNDMFQYPYPVEVERLQVQIAREVDSSTVWPSISPTQIYNVQASAFDVTYTPEKSGIYKILVLCANIVLNGG 375 (974)
Q Consensus 296 ~~a~F~V~~rda~~~~~~~~~~~l~V~I~~~~ds~~v~p~~~p~~i~d~~dG~y~VsYtP~~~G~Y~I~V~~~~~~i~Gg 375 (974)
|+++|+||+|++ +-|+|++.+.++. + .-++|.|+.||+|+|+|+|++||.|.|+|+|+++||+ |
T Consensus 775 ep~~fivDtr~a-------gyGgLsi~~~Gps---k-----vd~~~~d~~dGt~kV~ytPtepG~Y~I~i~Fad~~I~-g 838 (1113)
T KOG0518|consen 775 EPAEFIVDTRKA-------GYGGLSISVQGPS---K-----VDLNVEDREDGTCKVSYTPTEPGTYIINIKFADEHIK-G 838 (1113)
T ss_pred cchheEeccccC-------CCCceEEEEeCCc---c-----cccceeecCCCeEEEEEeCCCCceEEEEEEEcCccCC-C
Confidence 999999998864 4567889988876 2 3467899999999999999999999999999999999 9
Q ss_pred CceEEEEEccceeeeeccee--ecccc-cceeeeEEEEEEeecccCCccccCCCcEEEEEEcCCCCCceeeEEecCCCcc
Q 002057 376 HSFTKEVTASDVNMTLSGVV--KFTPK-VAKLITHEIVVQLLDSYSNPVLSQQSGLKLEITSMNSSGFSSWMFVDNNDGS 452 (974)
Q Consensus 376 sPF~~~V~~g~v~vs~s~v~--~~~~~-v~~~~~~~f~V~~~D~~~n~v~~~~~~Ltv~i~s~~~~~~~~~~i~~n~dGt 452 (974)
|||+++|.... ++- .++. ...+. ...+..++|.+.+.. ......+++++++. ......++++.++|+
T Consensus 839 SPftVkv~~~~-~vv-esi~~~~~~~~va~~g~~~~l~lk~~~-------~~~~d~ta~vt~PS-G~~~~aei~~~~~~~ 908 (1113)
T KOG0518|consen 839 SPFTVKVTGES-RVV-ESITRDREAPSVARVGHTCSLDLKATE-------ASSQDITARVTDPS-GRVFEAEIVDLGQGT 908 (1113)
T ss_pred CceEEEecCCe-eEe-eeeeecccccceecccceeeeeeecCC-------CCccceEEEeeCCC-CCccccEEEECCCce
Confidence 99999999543 111 1111 11111 112334455433331 33345677776532 234467899999999
Q ss_pred EEEEEEEeeeeeeEEEeecCCCcccccccceee
Q 002057 453 YSGHYLAMDVGTYEMCVSYDGTNFSLCPFLVNV 485 (974)
Q Consensus 453 Ytv~y~~~dsgtYtV~~~~g~~~~~~~pvtV~v 485 (974)
|.+.|++.+.|.|+|+++|.+.++..++|++-.
T Consensus 909 y~vrFtP~e~G~~tl~V~y~~~~vegspftvgs 941 (1113)
T KOG0518|consen 909 YQVRFTPKEPGNHTLSVKYKDQHVEGSPFTVGS 941 (1113)
T ss_pred EEEEecCCCCCceEEEEEecCccCCCCceeeec
Confidence 999999999999999999999999999987755
No 2
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=100.00 E-value=2.2e-40 Score=390.63 Aligned_cols=367 Identities=19% Similarity=0.242 Sum_probs=273.1
Q ss_pred EEEecCCceEEEEEEcCcceeEEEEEEECCeecCCCCeEEEEecCCCCCCeeEEecCCccceeEeCCeeEEEEEeccCCC
Q 002057 10 LISLLASTLSSASAAELAIGLFNVIIKDDLFEVLDSSLHFKVEPGRLNPSVCVASWMGLINEFEAGNKDRIMILPKDAFG 89 (974)
Q Consensus 10 ~~~~~~~~~~~v~Y~P~~~G~h~v~V~~~g~~I~gSPf~v~V~~g~~~~s~~~a~g~g~~~~~~aG~~a~f~I~~rDa~g 89 (974)
+++.|-.+.+.++|+|.++|+|+|+|+++|+||+||||.+.|...+.++++.+++|.|+..+..- +++.|.|++|+|+-
T Consensus 710 ~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~hVpgsPf~i~V~~~e~dAsk~~v~g~g~~~G~t~-ep~~fivDtr~agy 788 (1113)
T KOG0518|consen 710 LVRRLPNGHDGITFTPREVGEHKINVKVAGKHVPGSPFSIKVSESEIDASKVRVSGQGLKEGHTF-EPAEFIVDTRKAGY 788 (1113)
T ss_pred eeEecCCCceeEEECCCcCcceEEEEEEcceECCCCCeEEEeccccccceeEEEecccccccccc-cchheEeccccCCC
Confidence 56677888999999999999999999999999999999999999888999999999977544322 99999999999953
Q ss_pred CcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeecCCCCeeEEecCCCCC
Q 002057 90 NNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTLNGSPLPFKVNPGPVD 169 (974)
Q Consensus 90 n~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~gSPf~v~V~pg~~d 169 (974)
+.++|++.++. . +++ ++.+++||+|.|.|+|++||.|.|+|+|+++||+||||+|+|..
T Consensus 789 ------------GgLsi~~~Gps--k--vd~-~~~d~~dGt~kV~ytPtepG~Y~I~i~Fad~~I~gSPftVkv~~---- 847 (1113)
T KOG0518|consen 789 ------------GGLSISVQGPS--K--VDL-NVEDREDGTCKVSYTPTEPGTYIINIKFADEHIKGSPFTVKVTG---- 847 (1113)
T ss_pred ------------CceEEEEeCCc--c--ccc-ceeecCCCeEEEEEeCCCCceEEEEEEEcCccCCCCceEEEecC----
Confidence 35889998864 3 343 35689999999999999999999999999999999999999963
Q ss_pred CcceEEec----cccceeEEeeeeeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCceEEEEEeeC
Q 002057 170 VSNCVAKW----KYEVAAWQIFSKMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPGVQLFSYTIE 245 (974)
Q Consensus 170 ~s~~~~~g----~~~~~~~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG~~~vsf~P~ 245 (974)
.+ .+++. ....+.+..|+...|.++...+ +..+..|++..+ ++. ..+..+.++++|+|+|+|+|.
T Consensus 848 ~~-~vvesi~~~~~~~~va~~g~~~~l~lk~~~~------~~~d~ta~vt~P-SG~---~~~aei~~~~~~~y~vrFtP~ 916 (1113)
T KOG0518|consen 848 ES-RVVESITRDREAPSVARVGHTCSLDLKATEA------SSQDITARVTDP-SGR---VFEAEIVDLGQGTYQVRFTPK 916 (1113)
T ss_pred Ce-eEeeeeeecccccceecccceeeeeeecCCC------CccceEEEeeCC-CCC---ccccEEEECCCceEEEEecCC
Confidence 33 22221 1122345667777776654422 222445554432 222 335669999999999999999
Q ss_pred CceeEEEEEEeCCCcccccCCCeEEEEEccccCCcceEEeccCccccccCCceEEEEEEecCCCCCcccccceeE--E--
Q 002057 246 ESGNFLLTISDEKHNKSVSNMPYTYTVFVGYCNGSSSVVNGSGLNDSVAGETAHFSVYLNDMFQYPYPVEVERLQ--V-- 321 (974)
Q Consensus 246 ~~G~y~v~V~~~~~~~~I~gSPf~~~V~~g~~d~skv~a~G~GL~~~~~g~~a~F~V~~rda~~~~~~~~~~~l~--V-- 321 (974)
|+|.|.|.|+|. ++||.||||.+-=. +...++|+++.|+||+++.+|++ |.||.|+++.....+..+... +
T Consensus 917 e~G~~tl~V~y~--~~~vegspftvgs~-~e~~ahkvra~g~Gl~R~~~g~~--F~I~~rea~~~g~~va~egpsc~v~y 991 (1113)
T KOG0518|consen 917 EPGNHTLSVKYK--DQHVEGSPFTVGSL-GEGGAHKVRAAGPGLERGEAGEP--FSIWTREAGAGGLAVAVEGPSCGVSY 991 (1113)
T ss_pred CCCceEEEEEec--CccCCCCceeeecc-cccccceeeccCCceeeccccCc--eeEeehhcCccceEEEeeCCCceeEE
Confidence 999999999965 66999999654322 34578999999999999999999 999999865443222111110 0
Q ss_pred EEEecC------------------------CCccccCCCCCceeeecCCCeEEEEEecCCCeeEEEEEEECceEecCCCc
Q 002057 322 QIAREV------------------------DSSTVWPSISPTQIYNVQASAFDVTYTPEKSGIYKILVLCANIVLNGGHS 377 (974)
Q Consensus 322 ~I~~~~------------------------ds~~v~p~~~p~~i~d~~dG~y~VsYtP~~~G~Y~I~V~~~~~~i~GgsP 377 (974)
.+..|+ |+.-.+|+-.|.+|.....+.|.++|+|.+.|.|.|.|+|++.|++ |||
T Consensus 992 ~v~~pGv~~l~~~~~~~~~~v~tn~a~g~ida~v~~p~~~~~~c~~~~~~~ya~~f~P~e~G~h~i~Vkfd~~hv~-gSP 1070 (1113)
T KOG0518|consen 992 TVQTPGVGSLQEQGVPASFAVTTNRAKGDIDAKVHTPSNAVEECYVSEIEKYAMRFIPKENGVHTIDVKFDGEHVP-GSP 1070 (1113)
T ss_pred EecCCCcchhhhcCcceEEEEEeccccCceeeEEeCCCCCccEEEeeccceEEEEEeecCCCcEEEEEEeCCccCC-CCC
Confidence 000000 0000134446667888888899999999999999999999999999 999
Q ss_pred eEEEEEccceeeeecceeecccccceeeeEEEEEEeecccCCccccCCCcEEEEEEc
Q 002057 378 FTKEVTASDVNMTLSGVVKFTPKVAKLITHEIVVQLLDSYSNPVLSQQSGLKLEITS 434 (974)
Q Consensus 378 F~~~V~~g~v~vs~s~v~~~~~~v~~~~~~~f~V~~~D~~~n~v~~~~~~Ltv~i~s 434 (974)
|++.|. +++...++. . ..+|.+-+. .++.+.|++++.+
T Consensus 1071 F~i~v~---vsayG~gle-------~--~sefvvnt~-------~agaG~lsv~~~g 1108 (1113)
T KOG0518|consen 1071 FKIRVG---VSAYGPGLE-------G--KSEFVVNTS-------NAGAGALSVTIDG 1108 (1113)
T ss_pred eEEEEE---EEeecCCcC-------c--cceEEeecc-------CCCcceeeeecCC
Confidence 999987 233322222 1 455654333 3677888888765
No 3
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=99.66 E-value=8e-16 Score=141.61 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCeeEEecCCccceeEeCCeeEEEEEeccCCCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEe
Q 002057 58 PSVCVASWMGLINEFEAGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFIL 137 (974)
Q Consensus 58 ~s~~~a~g~g~~~~~~aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P 137 (974)
|++|+|+|+|+. ...+|+++.|.|.++|+++ .+|+|.+.+++|...+.+ +.+++||+|.|+|+|
T Consensus 1 p~~~~v~G~Gl~-~~~vg~~~~f~v~~~d~G~------------~~~~v~i~~p~g~~~~~~---v~d~~dGty~v~y~P 64 (93)
T smart00557 1 ASKVKASGPGLE-KGVVGEPAEFTIDTRGAGG------------GELEVEVTGPSGKKVPVE---VKDNGDGTYTVSYTP 64 (93)
T ss_pred CCeEEEECCCcC-ceecCCCEEEEEEcCCCCC------------CcEEEEEECCCCCeeEeE---EEeCCCCEEEEEEEe
Confidence 579999999775 4599999999999999832 379999999888654444 458999999999999
Q ss_pred cCCeeEEEEEEECCeecCCCCeeEEecC
Q 002057 138 MKAGNFSLHVEAGNQTLNGSPLPFKVNP 165 (974)
Q Consensus 138 ~~~G~Y~V~V~~~~~~I~gSPf~v~V~p 165 (974)
.++|.|.|+|+++|+||+||||+++|.+
T Consensus 65 ~~~G~~~i~V~~~g~~I~gSPF~v~V~~ 92 (93)
T smart00557 65 TEPGDYTVTVKFGGEHIPGSPFTVKVGP 92 (93)
T ss_pred CCCEeEEEEEEECCEECCCCCEEEEEeC
Confidence 9999999999999999999999999965
No 4
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=99.65 E-value=6.5e-16 Score=144.03 Aligned_cols=101 Identities=31% Similarity=0.469 Sum_probs=88.5
Q ss_pred ccCCcceEEeccCccccccCCceEEEEEEecCCCCCcccccceeEEEEEecCCCccccCCCCCceeeecCCCeEEEEEec
Q 002057 276 YCNGSSSVVNGSGLNDSVAGETAHFSVYLNDMFQYPYPVEVERLQVQIAREVDSSTVWPSISPTQIYNVQASAFDVTYTP 355 (974)
Q Consensus 276 ~~d~skv~a~G~GL~~~~~g~~a~F~V~~rda~~~~~~~~~~~l~V~I~~~~ds~~v~p~~~p~~i~d~~dG~y~VsYtP 355 (974)
++||++|+|.|+||+.+.+|++++|+|++||+++++...+...++|+|.++++... +...++++.++.+|+|.|+|+|
T Consensus 1 ~~dp~~~~v~G~gl~~~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~--~~~~~~~v~~~~~G~y~v~y~p 78 (101)
T PF00630_consen 1 YIDPSKCKVSGPGLEPAVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEE--PVPVPVEVIDNGDGTYTVSYTP 78 (101)
T ss_dssp SCSGCGEEEESGGGTEEETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS----EEEEEEEEESSSEEEEEEEE
T ss_pred CCCCCEEEEECCccCCeECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCcc--ccccceEEEECCCCEEEEEEEe
Confidence 47999999999999999999999999999999999888888889999988875310 0024567899999999999999
Q ss_pred CCCeeEEEEEEECceEecCCCceE
Q 002057 356 EKSGIYKILVLCANIVLNGGHSFT 379 (974)
Q Consensus 356 ~~~G~Y~I~V~~~~~~i~GgsPF~ 379 (974)
.++|.|.|+|+|++++|+ +|||+
T Consensus 79 ~~~G~y~i~V~~~g~~I~-gSPf~ 101 (101)
T PF00630_consen 79 TEPGKYKISVKINGQPIP-GSPFT 101 (101)
T ss_dssp SSSEEEEEEEEESSEB-T-TSSEE
T ss_pred CccEeEEEEEEECCEECc-CCCcC
Confidence 999999999999999999 99996
No 5
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=99.64 E-value=1.5e-15 Score=139.75 Aligned_cols=92 Identities=25% Similarity=0.428 Sum_probs=83.5
Q ss_pred CcceEEeccCccccccCCceEEEEEEecCCCCCcccccceeEEEEEecCCCccccCCCCCceeeecCCCeEEEEEecCCC
Q 002057 279 GSSSVVNGSGLNDSVAGETAHFSVYLNDMFQYPYPVEVERLQVQIAREVDSSTVWPSISPTQIYNVQASAFDVTYTPEKS 358 (974)
Q Consensus 279 ~skv~a~G~GL~~~~~g~~a~F~V~~rda~~~~~~~~~~~l~V~I~~~~ds~~v~p~~~p~~i~d~~dG~y~VsYtP~~~ 358 (974)
|++|+|+|+||+.+.+|++++|+|+++|+ |.+.++|.|.++++. ..|.++.|++||+|.|+|+|.++
T Consensus 1 p~~~~v~G~Gl~~~~vg~~~~f~v~~~d~-------G~~~~~v~i~~p~g~------~~~~~v~d~~dGty~v~y~P~~~ 67 (93)
T smart00557 1 ASKVKASGPGLEKGVVGEPAEFTIDTRGA-------GGGELEVEVTGPSGK------KVPVEVKDNGDGTYTVSYTPTEP 67 (93)
T ss_pred CCeEEEECCCcCceecCCCEEEEEEcCCC-------CCCcEEEEEECCCCC------eeEeEEEeCCCCEEEEEEEeCCC
Confidence 57999999999999999999999999987 345789999888752 36778999999999999999999
Q ss_pred eeEEEEEEECceEecCCCceEEEEEc
Q 002057 359 GIYKILVLCANIVLNGGHSFTKEVTA 384 (974)
Q Consensus 359 G~Y~I~V~~~~~~i~GgsPF~~~V~~ 384 (974)
|.|.|+|++++++|+ +|||.++|.+
T Consensus 68 G~~~i~V~~~g~~I~-gSPF~v~V~~ 92 (93)
T smart00557 68 GDYTVTVKFGGEHIP-GSPFTVKVGP 92 (93)
T ss_pred EeEEEEEEECCEECC-CCCEEEEEeC
Confidence 999999999999999 9999999875
No 6
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=99.62 E-value=4.1e-15 Score=138.65 Aligned_cols=98 Identities=24% Similarity=0.376 Sum_probs=82.5
Q ss_pred CCCCeeEEecCCccceeEeCCeeEEEEEeccCCCCcccccccccccceEEEEEEeCCCCcc--cceeEeceeCCCceEEE
Q 002057 56 LNPSVCVASWMGLINEFEAGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYANGSAL--TPNITNMGLNEVGYIII 133 (974)
Q Consensus 56 ~~~s~~~a~g~g~~~~~~aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~--~~~~~~~~~n~dGt~~v 133 (974)
.||++|+++|+|+ ....+|+++.|.|++||++|+.+..++ ..|.|.+.++.+... .+.+ .+.+++||+|.|
T Consensus 2 ~dp~~~~v~G~gl-~~~~~g~~~~F~V~~~d~~g~~~~~~~-----~~~~v~i~~p~~~~~~~~~~~-~v~~~~~G~y~v 74 (101)
T PF00630_consen 2 IDPSKCKVSGPGL-EPAVVGEPATFTVDTRDAGGNPVSSGG-----DEFQVTITSPDGKEEPVPVPV-EVIDNGDGTYTV 74 (101)
T ss_dssp CSGCGEEEESGGG-TEEETTSEEEEEEEETTTTSSBEESTS-----SEEEEEEESSSSESS--EEEE-EEEEESSSEEEE
T ss_pred CCCCEEEEECCcc-CCeECCCcEEEEEEEccCCCCccccCC-----ceeEEEEeCCCCCccccccce-EEEECCCCEEEE
Confidence 5899999999977 566999999999999999998876654 378999988877631 2333 245789999999
Q ss_pred EEEecCCeeEEEEEEECCeecCCCCee
Q 002057 134 EFILMKAGNFSLHVEAGNQTLNGSPLP 160 (974)
Q Consensus 134 ~Y~P~~~G~Y~V~V~~~~~~I~gSPf~ 160 (974)
+|+|.++|.|.|+|+++|+||+||||+
T Consensus 75 ~y~p~~~G~y~i~V~~~g~~I~gSPf~ 101 (101)
T PF00630_consen 75 SYTPTEPGKYKISVKINGQPIPGSPFT 101 (101)
T ss_dssp EEEESSSEEEEEEEEESSEB-TTSSEE
T ss_pred EEEeCccEeEEEEEEECCEECcCCCcC
Confidence 999999999999999999999999996
No 7
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=98.17 E-value=8.4e-06 Score=75.25 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=54.2
Q ss_pred cccccccCCCceEEEEE-ecCCceeEEEe-CcEEEEcCCCC----------CeeeeEEEEEEEcCCCCeeEEEEEEEEe-
Q 002057 511 ALANDYFAGNNASIIEF-SKPVRGSLLQY-GRIFRYTPFKD----------YIGNDSFSYTIADVNGNLATAAVNISVL- 577 (974)
Q Consensus 511 vLaND~D~g~~l~i~~v-~~p~~G~v~~~-~g~~tYtP~~~----------f~G~DsFtYtV~D~~G~~~tatVtVtV~- 577 (974)
+...|.|.++.+.+... .....|++.++ +|.|+|+++.. -..+|+|+|++.|+. +++|+|+|.
T Consensus 4 Lt~sD~D~gd~~~~s~~~~~g~yGtlti~~~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt----t~~vtItI~G 79 (99)
T TIGR01965 4 LTISDADAGQAHFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT----SQTVTITITG 79 (99)
T ss_pred eEEeCCCCCCceEEecccccCCcEEEEECCCCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC----eEEEEEEEEc
Confidence 34567777777666432 24578999998 89999999764 456899999999973 888888887
Q ss_pred -cCCCccc
Q 002057 578 -SIPPQFV 584 (974)
Q Consensus 578 -nd~P~~v 584 (974)
||+|++.
T Consensus 80 tNDapvi~ 87 (99)
T TIGR01965 80 ANDAAVIG 87 (99)
T ss_pred cCCCCEEe
Confidence 9999654
No 8
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=97.81 E-value=0.00019 Score=66.47 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=40.7
Q ss_pred ccceEEEecCCC----------CeeeeEEEEEEEcCCCCceEEEEEEEeeCCCCCeeccCce
Q 002057 670 ALQSIQYLGNEN----------FYGEDTIRVSARNKNGKNDLAVPVFVDPVNDPPFIQVPKY 721 (974)
Q Consensus 670 a~g~~~YtP~~~----------f~G~dsftytV~D~~g~~tatV~ItV~pvNd~P~~~~p~~ 721 (974)
++|+|+|+++.. -..+++|+|++.|+ .+++|+|+|...||+|++.....
T Consensus 33 ~~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG---tt~~vtItI~GtNDapvi~~~~~ 91 (99)
T TIGR01965 33 ADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG---TSQTVTITITGANDAAVIGGADT 91 (99)
T ss_pred CCCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC---CeEEEEEEEEccCCCCEEecccc
Confidence 478999999765 34579999999997 48999999999999999865433
No 9
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=97.46 E-value=0.11 Score=63.45 Aligned_cols=289 Identities=14% Similarity=0.176 Sum_probs=138.8
Q ss_pred eEEEEEEcCcceeEEEEEE---------ECCeecCCCCeEEEEecCCCCCCeeEEecC-CccceeEeCCeeEEEEEeccC
Q 002057 18 LSSASAAELAIGLFNVIIK---------DDLFEVLDSSLHFKVEPGRLNPSVCVASWM-GLINEFEAGNKDRIMILPKDA 87 (974)
Q Consensus 18 ~~~v~Y~P~~~G~h~v~V~---------~~g~~I~gSPf~v~V~~g~~~~s~~~a~g~-g~~~~~~aG~~a~f~I~~rDa 87 (974)
-=.++|+|..+|.|.|-|. |+...+ ..+.|.+- .++....- .+.....+|+.-.|.+.+..-
T Consensus 147 ~n~lsyt~~~~G~Y~ll~~~Kd~~S~~~fDD~~~----v~y~Vk~~----~~v~I~~F~~lns~~i~~~eI~f~~~a~~~ 218 (667)
T PRK14081 147 ENSLSYTANKPGKYELLVECKRIDSTKDFDDFKK----VKFKVKEI----DKVEITDFKCLNKELICDEELVFEVESVYE 218 (667)
T ss_pred cceEEEEecCCCcEEEEEEEecCCCccccCcceE----EEEEcccC----cceEEEeccccCcceecCcEEEEEEEEEeC
Confidence 3468999999999999876 344444 45666652 12222211 133445678888888876544
Q ss_pred CCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeecCCC-----CeeEE
Q 002057 88 FGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTLNGS-----PLPFK 162 (974)
Q Consensus 88 ~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~gS-----Pf~v~ 162 (974)
.|+.+ .+.|.+ ..++|..... .++.... .++|+|..+|.|.|.+..-+..=.+. =..+.
T Consensus 219 ~g~~~--------LYKF~~--i~~~G~~~~~----qdYst~n--~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~ 282 (667)
T PRK14081 219 EDRTI--------LYKFVK--IDSDGKQTCI----QDYSTKN--IVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYT 282 (667)
T ss_pred CCceE--------EEEEEE--ECCCCCEEEe----cCccccc--eEEEEeCCCccEEEEEEEeccCcccccccceEEEEE
Confidence 33322 245552 2345543110 0112222 35899999999999886543321110 00112
Q ss_pred ecC-CCCCCcceEEeccccceeEEeeeeeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCc-eEEE
Q 002057 163 VNP-GPVDVSNCVAKWKYEVAAWQIFSKMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPG-VQLF 240 (974)
Q Consensus 163 V~p-g~~d~s~~~~~g~~~~~~~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG-~~~v 240 (974)
|.+ .++-.....++. ...-..|+...|...+.. |+.+ ++.|.+. |. ..++.+=+ .-.+
T Consensus 283 Vk~~~~vkI~~~~~d~---~s~ql~g~~I~ika~a~G--G~~l--lYrf~I~------G~-------~~e~~~Y~~~n~~ 342 (667)
T PRK14081 283 VKPYKDIKIRNFTTDL---SSPQLTDTDIELKAVAEG--GKEL--LYRFIIK------GK-------ESEDSGYIRNNIY 342 (667)
T ss_pred EecCCCcEEEEEEEcC---CCCeecCceEEEEEEecC--CCce--EEEEEEC------Cc-------EEeeccccccceE
Confidence 221 011111122211 111234455555443322 2211 2333331 11 12222222 2368
Q ss_pred EEeeCCceeEEEEEE--eCCCcccccC-CCeEEEEEccccCCc---ceEEeccCccccccCCceEEEEEEecCCCCCccc
Q 002057 241 SYTIEESGNFLLTIS--DEKHNKSVSN-MPYTYTVFVGYCNGS---SSVVNGSGLNDSVAGETAHFSVYLNDMFQYPYPV 314 (974)
Q Consensus 241 sf~P~~~G~y~v~V~--~~~~~~~I~g-SPf~~~V~~g~~d~s---kv~a~G~GL~~~~~g~~a~F~V~~rda~~~~~~~ 314 (974)
.|+|.++|.|.|.|+ +....+.--. .=..++|..-...|. .+.+. .-+.-.+|++..+.+.+.+..
T Consensus 343 ~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d--~~~~~lvG~~i~i~v~a~gg~------ 414 (667)
T PRK14081 343 TWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILD--KGKHILKGEEIKIRVIAEGGT------ 414 (667)
T ss_pred EEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEEC--CCCceEeCCeEEEEEEecCCC------
Confidence 999999999999875 2211111110 111223321111222 22222 223446788888888765431
Q ss_pred ccceeEEEE-EecCCCccccCCCCCceeeecCC-CeEEEEEecCCCeeEEEEEEECceE
Q 002057 315 EVERLQVQI-AREVDSSTVWPSISPTQIYNVQA-SAFDVTYTPEKSGIYKILVLCANIV 371 (974)
Q Consensus 315 ~~~~l~V~I-~~~~ds~~v~p~~~p~~i~d~~d-G~y~VsYtP~~~G~Y~I~V~~~~~~ 371 (974)
.+..+. ...++. .+.+..= -.-.+.|+|..+|.|+|.|+..+..
T Consensus 415 ---~~lY~f~ik~ng~----------~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~ 460 (667)
T PRK14081 415 ---NLRYSFIIKKDGK----------EEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKY 460 (667)
T ss_pred ---eEEEEEEEEECCE----------EEEEeecccccEEEEEECCCeeEEEEEEEeccc
Confidence 122211 111210 0111111 1356899999999999999987753
No 10
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=97.42 E-value=0.11 Score=63.37 Aligned_cols=295 Identities=15% Similarity=0.127 Sum_probs=141.5
Q ss_pred ceEEEEEEcCcceeEEEEEEECCeecCC-----CCeEEEEecC-CCCCCeeEEecCCccceeEeCCeeEEEEEeccCCCC
Q 002057 17 TLSSASAAELAIGLFNVIIKDDLFEVLD-----SSLHFKVEPG-RLNPSVCVASWMGLINEFEAGNKDRIMILPKDAFGN 90 (974)
Q Consensus 17 ~~~~v~Y~P~~~G~h~v~V~~~g~~I~g-----SPf~v~V~~g-~~~~s~~~a~g~g~~~~~~aG~~a~f~I~~rDa~gn 90 (974)
.--.++|+|..+|.|.|.+......=.+ .=..+.|.+- ++--....+. .......|+.-.|...+. +|+
T Consensus 244 t~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d---~~s~ql~g~~I~ika~a~--GG~ 318 (667)
T PRK14081 244 TKNIVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTD---LSSPQLTDTDIELKAVAE--GGK 318 (667)
T ss_pred ccceEEEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEc---CCCCeecCceEEEEEEec--CCC
Confidence 3346799999999999988754332111 1123344321 1111111222 122335677777776553 233
Q ss_pred cccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeecCC-----CCeeEEecC
Q 002057 91 NVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTLNG-----SPLPFKVNP 165 (974)
Q Consensus 91 ~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~g-----SPf~v~V~p 165 (974)
++ .+.|.|. |... ...++.. .-.+.|+|.++|.|.|.|..-++.=.+ .=..++|..
T Consensus 319 ~l--------lYrf~I~-----G~~~----e~~~Y~~--~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~ 379 (667)
T PRK14081 319 EL--------LYRFIIK-----GKES----EDSGYIR--NNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEE 379 (667)
T ss_pred ce--------EEEEEEC-----CcEE----eeccccc--cceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcc
Confidence 32 2556553 2221 1111111 245699999999999998775553321 112334432
Q ss_pred CCCCCcceEEeccccceeEEeeeeeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCc-eEEEEEee
Q 002057 166 GPVDVSNCVAKWKYEVAAWQIFSKMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPG-VQLFSYTI 244 (974)
Q Consensus 166 g~~d~s~~~~~g~~~~~~~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG-~~~vsf~P 244 (974)
-+-.|.+..-.-........+|+.+.+.+.+.+. +. =++.|-+..- |. .+++.+=+ .-.++|+|
T Consensus 380 ~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg--~~--~lY~f~ik~n----g~-------~ve~~~Y~~~~~~~f~P 444 (667)
T PRK14081 380 KSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGG--TN--LRYSFIIKKD----GK-------EEEKIDYGKNNWVNFIP 444 (667)
T ss_pred cCCCCeEEEEEEECCCCceEeCCeEEEEEEecCC--Ce--EEEEEEEEEC----CE-------EEEEeecccccEEEEEE
Confidence 1112222111001122456667777777765442 11 1223433321 11 13333322 34699999
Q ss_pred CCceeEEEEEE--eCCCcccccC-CCeEEEEEccccCCcc-eEEeccCccccccCCceEEEEEEecCCCCCcccccceeE
Q 002057 245 EESGNFLLTIS--DEKHNKSVSN-MPYTYTVFVGYCNGSS-SVVNGSGLNDSVAGETAHFSVYLNDMFQYPYPVEVERLQ 320 (974)
Q Consensus 245 ~~~G~y~v~V~--~~~~~~~I~g-SPf~~~V~~g~~d~sk-v~a~G~GL~~~~~g~~a~F~V~~rda~~~~~~~~~~~l~ 320 (974)
.++|.|+|.|. +....++.-. .=+.+.|..- -|.+ -.+-=+-.+...+|+..+|++.+++...-.. ...
T Consensus 445 ~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~--~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y-----~y~ 517 (667)
T PRK14081 445 EEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEY--IPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLI-----KYI 517 (667)
T ss_pred CCCeeEEEEEEEecccCchhcccceEEEEEEecc--CceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEE-----EEE
Confidence 99999999885 2222222211 1122333310 1110 0000122344578999999998776311100 011
Q ss_pred EEEEecCCCccccCCCCCceeeecCC--CeEEEEEecCCCeeEEEEEEECceE
Q 002057 321 VQIAREVDSSTVWPSISPTQIYNVQA--SAFDVTYTPEKSGIYKILVLCANIV 371 (974)
Q Consensus 321 V~I~~~~ds~~v~p~~~p~~i~d~~d--G~y~VsYtP~~~G~Y~I~V~~~~~~ 371 (974)
+.+ ++. .+...+ -.-..+|+|..+|.|+|.|+..+.-
T Consensus 518 ~~~---NG~-----------~v~~t~Ys~~~~ysf~P~~~GkY~I~V~aKn~~ 556 (667)
T PRK14081 518 LKI---NGH-----------KVEETDYIKNKKYKFIPKCSGKYTIEVLAKNIK 556 (667)
T ss_pred EEE---CCE-----------EEEEeeccccceEEEeecCCceEEEEEEEcccc
Confidence 111 111 000010 1124578899999999999998753
No 11
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=97.32 E-value=1.1 Score=57.73 Aligned_cols=206 Identities=17% Similarity=0.166 Sum_probs=114.2
Q ss_pred cccccceeeccc-ccCCc--cccceEEeecCCc---EEEecccccccCCCceEEEEEecCCceeEEEe--CcEEEEcCCC
Q 002057 477 SLCPFLVNVYSS-QYFPK--AYDDKVSVWEDES---IALDALANDYFAGNNASIIEFSKPVRGSLLQY--GRIFRYTPFK 548 (974)
Q Consensus 477 ~~~pvtV~v~~~-n~~Pv--A~dD~~~~~ed~~---v~i~vLaND~D~g~~l~i~~v~~p~~G~v~~~--~g~~tYtP~~ 548 (974)
.++.+.|.|... ..+|+ +..-.+++.|+.+ +.+.+-++|.|.|.+..+ ......-|-..|+ .|.|+-+-.-
T Consensus 460 n~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l-~y~laG~~pf~I~~~SG~Itvtk~l 538 (2531)
T KOG4289|consen 460 NTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARL-HYSLAGVGPFQINNGSGWITVTKEL 538 (2531)
T ss_pred CCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccce-eeeeccCCCeeEecCCceEEEeecc
Confidence 345555666542 23564 3344567777765 456778999997665333 2333444566665 4788888877
Q ss_pred CCeeeeEEEEEEEcCC-CC---eeEEEEEEEEe--c-CCCccccCCCcccccccccccccCcceeeEEeecCCccceEEE
Q 002057 549 DYIGNDSFSYTIADVN-GN---LATAAVNISVL--S-IPPQFVSFPSQLQATEDMISPRFGGFLGFEIRYSDMLENISVS 621 (974)
Q Consensus 549 ~f~G~DsFtYtV~D~~-G~---~~tatVtVtV~--n-d~P~~v~~p~~~~a~eD~~~~~~~~~~~i~v~~nD~~~~isvt 621 (974)
++.-.+-..+-|.+-. |. +++++|.|+|. | ..|++..--..+..+||.+. .-..+.+.-.++|.+..++..
T Consensus 539 drEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pv--gsSI~tvtAvD~d~~s~ityq 616 (2531)
T KOG4289|consen 539 DRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPV--GSSIVTVTAVDRDANSVITYQ 616 (2531)
T ss_pred cccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccc--cceEEEEEEeccccccceEEE
Confidence 8777776666666543 22 34677888876 3 35677655556677888753 111223333334443334443
Q ss_pred eeeccceeEeeccccccccCCCcceEEEecCCcceeEEEcccEEEEecccceEEEecCCCC--eeeeEEEEEEEcCCCCc
Q 002057 622 LSARSGTVLLSSMMMQFWQPMSSGLSVRIGDGYQKELIIEGSVEIISMALQSIQYLGNENF--YGEDTIRVSARNKNGKN 699 (974)
Q Consensus 622 v~a~~G~l~l~p~~~~~~~p~~g~ltv~~~~~~~~~l~~~Gtv~~in~a~g~~~YtP~~~f--~G~dsftytV~D~~g~~ 699 (974)
+.. |+- ...+.+++..+ .|-++-.-..++ .+.-....+++||.-..
T Consensus 617 i~g--~nt-------------rn~Fsi~si~g-----------------~Glitlalp~dkKqe~~~vl~vtAtDg~l~d 664 (2531)
T KOG4289|consen 617 ITG--GNT-------------RNRFSISSIGG-----------------GGLITLALPLDKKQERQYVLAVTATDGTLQD 664 (2531)
T ss_pred ecC--Ccc-------------cccceeeccCC-----------------cceEEeecchhhcccceEEEEEEecCCcccc
Confidence 332 210 01122222110 011222222222 24556778888865456
Q ss_pred eEEEEEEEeeCC-CCCeec
Q 002057 700 DLAVPVFVDPVN-DPPFIQ 717 (974)
Q Consensus 700 tatV~ItV~pvN-d~P~~~ 717 (974)
+..|.|.|+-.| ..|++.
T Consensus 665 ~~~V~v~I~danThrpvFq 683 (2531)
T KOG4289|consen 665 TCSVNVNITDANTHRPVFQ 683 (2531)
T ss_pred ceEEEEEeeecccCCcccc
Confidence 799999999999 788754
No 12
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=96.61 E-value=0.85 Score=58.54 Aligned_cols=231 Identities=21% Similarity=0.206 Sum_probs=130.0
Q ss_pred cccceeec--ccccCCccccce--EEeecCC---cEEEecccccccCCCc--eEEEEEecCCceeEEEe--CcEEEEcCC
Q 002057 479 CPFLVNVY--SSQYFPKAYDDK--VSVWEDE---SIALDALANDYFAGNN--ASIIEFSKPVRGSLLQY--GRIFRYTPF 547 (974)
Q Consensus 479 ~pvtV~v~--~~n~~PvA~dD~--~~~~ed~---~v~i~vLaND~D~g~~--l~i~~v~~p~~G~v~~~--~g~~tYtP~ 547 (974)
+.+.|+|. |+| +|+-..+. +.+.||. .+.+.|.|.|.|.|.+ +.....+....|.+.++ -|.+...-.
T Consensus 358 a~V~itV~D~NDN-aPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~p 436 (2531)
T KOG4289|consen 358 AMVEITVEDENDN-APQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEP 436 (2531)
T ss_pred EEEEEEEEecCCC-CccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEecc
Confidence 33444444 444 67666665 4677875 3566888999995543 44455677788999887 578888777
Q ss_pred CCCeee-eEEEEEEEcCCC--CeeEEEEEEEEe---cCCCccccCCCcccccccccccccCcceeeEEeecCCccceEEE
Q 002057 548 KDYIGN-DSFSYTIADVNG--NLATAAVNISVL---SIPPQFVSFPSQLQATEDMISPRFGGFLGFEIRYSDMLENISVS 621 (974)
Q Consensus 548 ~~f~G~-DsFtYtV~D~~G--~~~tatVtVtV~---nd~P~~v~~p~~~~a~eD~~~~~~~~~~~i~v~~nD~~~~isvt 621 (974)
-+|.-. .+..-...|+.- .+.+.-++|.|. ..+|.+++.|.+.++.|-... +-.-..+-.+|.++
T Consensus 437 lD~e~~~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~l----g~~v~~vqaidads----- 507 (2531)
T KOG4289|consen 437 LDFENSEYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPL----GYLVCHVQAIDADS----- 507 (2531)
T ss_pred ccccCCeeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccc----cceEEEEecccCCC-----
Confidence 777655 233333346531 123334447776 468888877765555553321 11222333333322
Q ss_pred eeeccceeEeeccccccccCCCcceEEEecCCcceeEEEcccE-EEEecccceEEEecCCCCeeeeEEEEEEEcCC-CC-
Q 002057 622 LSARSGTVLLSSMMMQFWQPMSSGLSVRIGDGYQKELIIEGSV-EIISMALQSIQYLGNENFYGEDTIRVSARNKN-GK- 698 (974)
Q Consensus 622 v~a~~G~l~l~p~~~~~~~p~~g~ltv~~~~~~~~~l~~~Gtv-~~in~a~g~~~YtP~~~f~G~dsftytV~D~~-g~- 698 (974)
+.++.+..+ +.|.. -.|+...|.|+-+---|+--.+...+-|.+.+ |.
T Consensus 508 -------------------g~na~l~y~----------laG~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp 558 (2531)
T KOG4289|consen 508 -------------------GENARLHYS----------LAGVGPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTP 558 (2531)
T ss_pred -------------------Ccccceeee----------eccCCCeeEecCCceEEEeecccccccceEEEEEEEcCCCCC
Confidence 122222222 11211 23455567888887777776666666666653 33
Q ss_pred ---ceEEEEEEEeeCCC-CCeeccCceEEeecCCC---CceEec-----CC-CCcEEEEEeCCC
Q 002057 699 ---NDLAVPVFVDPVND-PPFIQVPKYIVLKSDAD---ESQIFD-----RE-TNKFNVSIGDPD 749 (974)
Q Consensus 699 ---~tatV~ItV~pvNd-~P~~~~p~~i~~~~n~d---g~~~~~-----p~-~d~~~ysv~D~~ 749 (974)
++++|.|+|.++|| .|++..+.+. +.-||| |+-+|+ .+ ...++|.|...+
T Consensus 559 ~l~tstsI~Vtv~dvndndP~Ft~~eyt-l~inED~pvgsSI~tvtAvD~d~~s~ityqi~g~n 621 (2531)
T KOG4289|consen 559 PLSTSTSISVTVLDVNDNDPTFTQKEYT-LRINEDAPVGSSIVTVTAVDRDANSVITYQITGGN 621 (2531)
T ss_pred cccccceEEEEecccCCCCCccccCceE-EEecCCccccceEEEEEEeccccccceEEEecCCc
Confidence 25899999999997 5887665443 233454 443332 11 234677776554
No 13
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=95.75 E-value=2 Score=44.30 Aligned_cols=86 Identities=23% Similarity=0.177 Sum_probs=54.6
Q ss_pred EEeecCCcE---EEecccccccCC--CceEEEEEecCCceeEEEe--CcEEEEcCCCCCee--eeEEEEEEEcCCCCe--
Q 002057 499 VSVWEDESI---ALDALANDYFAG--NNASIIEFSKPVRGSLLQY--GRIFRYTPFKDYIG--NDSFSYTIADVNGNL-- 567 (974)
Q Consensus 499 ~~~~ed~~v---~i~vLaND~D~g--~~l~i~~v~~p~~G~v~~~--~g~~tYtP~~~f~G--~DsFtYtV~D~~G~~-- 567 (974)
+.+.|+.+. ...+.|.|.|.+ ..+.+.....+..+.+.++ .|.+.+...-+|.- ...|...+.|..+..
T Consensus 4 ~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~~~~ 83 (199)
T cd00031 4 VSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGPPLS 83 (199)
T ss_pred EEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcCcce
Confidence 344555432 335558888854 5566655555555777776 38888888666654 456666677854444
Q ss_pred eEEEEEEEEe--cC-CCccc
Q 002057 568 ATAAVNISVL--SI-PPQFV 584 (974)
Q Consensus 568 ~tatVtVtV~--nd-~P~~v 584 (974)
.+.+|+|.|. |+ +|++.
T Consensus 84 ~~~~v~I~V~d~Nd~~P~~~ 103 (199)
T cd00031 84 STATVTVTVLDVNDNPPVFE 103 (199)
T ss_pred eEEEEEEEEccCCCCCCccc
Confidence 6788888887 55 55443
No 14
>PF13584 BatD: Oxygen tolerance
Probab=95.25 E-value=2 Score=51.63 Aligned_cols=146 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred CceEEEEEEcCcceeEEE---EEEECCeecCCCCeEEEEecCCCCCC--------eeEEecCCccceeEeCCeeEEEEEe
Q 002057 16 STLSSASAAELAIGLFNV---IIKDDLFEVLDSSLHFKVEPGRLNPS--------VCVASWMGLINEFEAGNKDRIMILP 84 (974)
Q Consensus 16 ~~~~~v~Y~P~~~G~h~v---~V~~~g~~I~gSPf~v~V~~g~~~~s--------~~~a~g~g~~~~~~aG~~a~f~I~~ 84 (974)
+..+.+.+.|.++|.|+| .|.++|+...--|+++.|.+....+. .....+---....-+|++..+++..
T Consensus 72 ~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~~~~~~~~~~~~~~~~~~l~~~v~~~~~Yvge~v~lt~~l 151 (484)
T PF13584_consen 72 STTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSKASQSPSQPPSNADDDVFLEAEVSKKSVYVGEPVILTLRL 151 (484)
T ss_pred EEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEEEEecccCCccccccccccEEEEEEeCCCceecCCcEEEEEEE
Confidence 467889999999999986 67889999999999999998654332 2222222112355678888776654
Q ss_pred ccCCCCc-cc-ccccccccceEEEEEEeCCCCcccceeEeceeCCCc--eE-----EEEEEecCCeeEEE-----EEEEC
Q 002057 85 KDAFGNN-VT-STSEELSSFNFTVSALYANGSALTPNITNMGLNEVG--YI-----IIEFILMKAGNFSL-----HVEAG 150 (974)
Q Consensus 85 rDa~gn~-i~-~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dG--t~-----~v~Y~P~~~G~Y~V-----~V~~~ 150 (974)
.-...-. +. ..-..+...+|.++-.+........ .-+| +. +...+|.++|.+.| .+...
T Consensus 152 y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~ 224 (484)
T PF13584_consen 152 YTRNNFRQLGIEELPPPDFEGFWVEQLGDDRQYEEE-------RINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVS 224 (484)
T ss_pred EEecCchhccccccCCCCCCCcEEEECCCCCceeEE-------EECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEe
Confidence 3221111 00 0112233345665554322111100 0123 22 23458999999998 22221
Q ss_pred ----------C-------eecCCCCeeEEecCCCC
Q 002057 151 ----------N-------QTLNGSPLPFKVNPGPV 168 (974)
Q Consensus 151 ----------~-------~~I~gSPf~v~V~pg~~ 168 (974)
. ..+..-|.+++|.|-|.
T Consensus 225 ~~~~~~~~fg~~~~~~~~~~~~s~~~~i~V~plP~ 259 (484)
T PF13584_consen 225 DPSGRRDFFGGNFGRSRPVSISSEPLTITVKPLPA 259 (484)
T ss_pred cccCccCccccccccceeEEecCCCeEEEeccCCc
Confidence 1 24566699999987543
No 15
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=95.23 E-value=1.5 Score=45.21 Aligned_cols=121 Identities=18% Similarity=0.041 Sum_probs=77.9
Q ss_pred EEEeeeeeeEEEeecCCCcc--cccccceeeccccc-CCccc--cceEEeecCC---cEEEecccccccCC--CceEEEE
Q 002057 457 YLAMDVGTYEMCVSYDGTNF--SLCPFLVNVYSSQY-FPKAY--DDKVSVWEDE---SIALDALANDYFAG--NNASIIE 526 (974)
Q Consensus 457 y~~~dsgtYtV~~~~g~~~~--~~~pvtV~v~~~n~-~PvA~--dD~~~~~ed~---~v~i~vLaND~D~g--~~l~i~~ 526 (974)
|.......+.|...+.+... ....++|.+...|+ +|... .-.+.+.|+. ...+.+.+.|.|.+ +.++...
T Consensus 62 ~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l 141 (199)
T cd00031 62 REEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSI 141 (199)
T ss_pred CcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEE
Confidence 34444445555555533333 56777777776554 56655 4567788884 45667779998853 6677755
Q ss_pred EecCCceeEEEe--CcEEEEcCCCCCe--eeeEEEEEEEcCC--CCeeEEEEEEEEe
Q 002057 527 FSKPVRGSLLQY--GRIFRYTPFKDYI--GNDSFSYTIADVN--GNLATAAVNISVL 577 (974)
Q Consensus 527 v~~p~~G~v~~~--~g~~tYtP~~~f~--G~DsFtYtV~D~~--G~~~tatVtVtV~ 577 (974)
......+.+.++ .|.+......++. +...|+.++.|.. +.+.+++++|.|.
T Consensus 142 ~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~ 198 (199)
T cd00031 142 LSGNDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVL 198 (199)
T ss_pred eCCCCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEE
Confidence 555544666665 5777777544443 4678888888987 5667777877774
No 16
>PF13584 BatD: Oxygen tolerance
Probab=95.10 E-value=10 Score=45.45 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=33.7
Q ss_pred ceEEEEEEecCCeeEEE---EEEECCeecCCCCeeEEecCCC
Q 002057 129 GYIIIEFILMKAGNFSL---HVEAGNQTLNGSPLPFKVNPGP 167 (974)
Q Consensus 129 Gt~~v~Y~P~~~G~Y~V---~V~~~~~~I~gSPf~v~V~pg~ 167 (974)
=+|.+.+.|.++|.|.| .|+.+|+...--|.+++|.+..
T Consensus 73 ~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~~~ 114 (484)
T PF13584_consen 73 TTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSKAS 114 (484)
T ss_pred EEEEEEEEecccceEEEceEEEEECCEEEeecCEEEEEEecc
Confidence 35888999999999996 4777999999999999998754
No 17
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=94.15 E-value=2.8 Score=56.80 Aligned_cols=124 Identities=16% Similarity=0.248 Sum_probs=88.0
Q ss_pred eeEeCCeeEEEEEeccCCCCc-ccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEec---CCeeEEEE
Q 002057 71 EFEAGNKDRIMILPKDAFGNN-VTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILM---KAGNFSLH 146 (974)
Q Consensus 71 ~~~aG~~a~f~I~~rDa~gn~-i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~---~~G~Y~V~ 146 (974)
-.++|+..++.+..||..+.. + ....+.+++..++|.. ++-..+...+.|.++++|.-. ..|.|.++
T Consensus 404 lYRpGE~v~~~~~~R~~~~~~a~-------~~~p~~l~v~~PdG~~--~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~ 474 (1621)
T COG2373 404 LYRPGETVHVNALLRDFDGKTAL-------DNQPLKLRVLDPDGSV--LRTLTITLDEEGLYELSFPLPENALTGGYTLE 474 (1621)
T ss_pred cCCCCceeeeeeeehhhcccccc-------cCCCeEEEEECCCCcE--EEEEEEeccccCceEEeeeCCCCCCcceEEEE
Confidence 468999999999999986642 2 1246889999999965 222223346899999999544 46999999
Q ss_pred EEECCe-ecCCCCeeEEecCCCCCCcceEEeccccceeEEeeeeeEEEEeeccccCCCCCce
Q 002057 147 VEAGNQ-TLNGSPLPFKVNPGPVDVSNCVAKWKYEVAAWQIFSKMEIFIHQLDQYGNLVPGF 207 (974)
Q Consensus 147 V~~~~~-~I~gSPf~v~V~pg~~d~s~~~~~g~~~~~~~~~g~~~~f~i~~~da~gn~v~g~ 207 (974)
+...++ .+....|.|... -+.+-++.=..-...+..|+...+.|..+..||.++.+.
T Consensus 475 ~~~~~~~~~~s~~f~V~df----~p~r~~i~l~~~k~~~~~g~~v~~~v~~~yL~GaPa~g~ 532 (1621)
T COG2373 475 LYTGGKSAVISMSFRVEDF----IPDRFKINLTLDKTEWVPGKDVKIKVDLRYLYGAPAAGL 532 (1621)
T ss_pred EEeCCccceeeeeEEhhHh----CCceEEEecccccccccCCCcEEEEEEEEecCCCcccCc
Confidence 999887 566667776543 223333322222234688999999999999999988854
No 18
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=92.27 E-value=5.5 Score=45.05 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=42.6
Q ss_pred ccCCCceEEEEEecCCceeEEEe-CcEEEEcCCC---CCeeeeEEEEE-EEcCCCCeeEE-EEEEEEecCC
Q 002057 516 YFAGNNASIIEFSKPVRGSLLQY-GRIFRYTPFK---DYIGNDSFSYT-IADVNGNLATA-AVNISVLSIP 580 (974)
Q Consensus 516 ~D~g~~l~i~~v~~p~~G~v~~~-~g~~tYtP~~---~f~G~DsFtYt-V~D~~G~~~ta-tVtVtV~nd~ 580 (974)
.+.++.+.+.. ....|++... +|.|+|+... --.|..+|+.+ +.|..|+..++ ..+++|...+
T Consensus 72 ~~~g~~v~v~~--~g~~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~~~tD~aGN~~t~~s~~~~vDt~~ 140 (317)
T PF13753_consen 72 AEPGSTVTVTI--NGTTGTLTADADGNWSVTVTPSDDLPDGDYTITVTTVTDAAGNTSTAASQTFTVDTTA 140 (317)
T ss_pred CCCCCEEEEEE--CCEEEEEEEecCCcEEEeeccccccccCcceeEEEEEEccCCcccccccccccccccc
Confidence 34466565533 3344666654 6777776543 24677899999 99999998887 7788777553
No 19
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=91.83 E-value=1.2 Score=41.18 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=38.7
Q ss_pred cccceEEEecCCCCeeeeEEEEEEEcCCCCc-eEEEEEEEeeCCCC
Q 002057 669 MALQSIQYLGNENFYGEDTIRVSARNKNGKN-DLAVPVFVDPVNDP 713 (974)
Q Consensus 669 ~a~g~~~YtP~~~f~G~dsftytV~D~~g~~-tatV~ItV~pvNd~ 713 (974)
+..++|..+|..+..|.-+|.++++|+.|.+ ..+++|.|.+.|++
T Consensus 52 ~~~~~~~GtP~~~~~g~~~i~v~a~D~~g~~~~~~f~i~V~~~~~~ 97 (97)
T smart00736 52 SDTGTLSGTPTNSDVGSLSLKVTATDSSGASASDTFTITVVNTNDA 97 (97)
T ss_pred CCCCEEEEECCCCCCcEEEEEEEEEECCCCEEEEEEEEEEeCCCCC
Confidence 3457899999999999999999999999865 58899999998874
No 20
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=91.54 E-value=2.6 Score=38.96 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=56.7
Q ss_pred EeecCCcEEEecc---cccccCCCceEEEEEec---CCceeEEEe--CcEEEEcCCCCCeeeeEEEEEEEcCCCCeeEEE
Q 002057 500 SVWEDESIALDAL---ANDYFAGNNASIIEFSK---PVRGSLLQY--GRIFRYTPFKDYIGNDSFSYTIADVNGNLATAA 571 (974)
Q Consensus 500 ~~~ed~~v~i~vL---aND~D~g~~l~i~~v~~---p~~G~v~~~--~g~~tYtP~~~f~G~DsFtYtV~D~~G~~~tat 571 (974)
...+++...+.+. ..|.| ++.+++..... +..+=+.++ .+.+..+|..+..|..+|..+++|+.|.++...
T Consensus 8 ~a~~g~~f~~~i~~~tF~d~d-~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~GtP~~~~~g~~~i~v~a~D~~g~~~~~~ 86 (97)
T smart00736 8 TATEGESFSYTIPSSTFTDAD-GDTLTYSATLSDGSALPSWLSFDSDTGTLSGTPTNSDVGSLSLKVTATDSSGASASDT 86 (97)
T ss_pred EEeCCCeEEEEcChhceECCC-CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEECCCCCCcEEEEEEEEEECCCCEEEEE
Confidence 4556666666554 34555 77777644322 223345555 488999999988999999999999999889999
Q ss_pred EEEEEecC
Q 002057 572 VNISVLSI 579 (974)
Q Consensus 572 VtVtV~nd 579 (974)
++|+|.+.
T Consensus 87 f~i~V~~~ 94 (97)
T smart00736 87 FTITVVNT 94 (97)
T ss_pred EEEEEeCC
Confidence 99999743
No 21
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=66 Score=40.61 Aligned_cols=291 Identities=13% Similarity=0.111 Sum_probs=134.4
Q ss_pred EEEEEcCcceeEEEEEEECCeecCCCCeEEE-EecC-CCCCCeeEEecCCccceeEe-CCe---eEEEEEeccCCCCccc
Q 002057 20 SASAAELAIGLFNVIIKDDLFEVLDSSLHFK-VEPG-RLNPSVCVASWMGLINEFEA-GNK---DRIMILPKDAFGNNVT 93 (974)
Q Consensus 20 ~v~Y~P~~~G~h~v~V~~~g~~I~gSPf~v~-V~~g-~~~~s~~~a~g~g~~~~~~a-G~~---a~f~I~~rDa~gn~i~ 93 (974)
..+|.|..||.|.|.-....-+...---++. |... .+-+..-.++|=.+...+++ |.| +.|.....+..--.+.
T Consensus 157 ky~f~~iiPG~Yev~ashp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~s~s~P~~gv~~~l~s~~v~~~dvp 236 (1165)
T KOG1948|consen 157 KYEFRNIIPGKYEVSASHPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVRSESMPFVGVVMTLYSTSVIDLDVP 236 (1165)
T ss_pred eEEEEecCCCceEEeccCcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEeccCCcccceEEEEEEcccccccCC
Confidence 5789999999999998877666543333333 3322 22334445665544444443 222 2333333222110000
Q ss_pred ccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeecCCCCeeEEecCCCCCCcce
Q 002057 94 STSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTLNGSPLPFKVNPGPVDVSNC 173 (974)
Q Consensus 94 ~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~gSPf~v~V~pg~~d~s~~ 173 (974)
.+-....+.+ -+.+ +...+..-.-.++|.|++.=+| .|.|.+--.+-| +|..+.|.|.+.+ .
T Consensus 237 kc~gs~ap~n------~~a~--e~vslc~~vsd~~G~fsfksvP--sGkY~l~a~y~g-----e~~~fdvSP~~l~---v 298 (1165)
T KOG1948|consen 237 KCVGSEAPLN------VPAT--ENVSLCIGVSDPRGRFSFKSVP--SGKYYLAASYVG-----EPKSFDVSPNPLK---V 298 (1165)
T ss_pred ccccCCCCCC------CCcc--cceeeEEEEEcCCceEEEEEcC--CCCEEEEEEecC-----CceEEEeCCCcee---E
Confidence 0000000000 0011 1122211112578888665555 799998765543 4445555553322 2
Q ss_pred EEeccccceeEEeeeeeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCceEEEEEeeCCceeEEEE
Q 002057 174 VAKWKYEVAAWQIFSKMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPGVQLFSYTIEESGNFLLT 253 (974)
Q Consensus 174 ~~~g~~~~~~~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG~~~vsf~P~~~G~y~v~ 253 (974)
.++ ..-+...+.+.-+-|++..|-..|..--++....+.+.+ +.-.+--.+|.|.++= -.+.|.|.|+
T Consensus 299 ~Ve-hd~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvng----------k~~~kTdaqGyykLen-~~t~gtytI~ 366 (1165)
T KOG1948|consen 299 VVE-HDHLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNG----------KSGGKTDAQGYYKLEN-LKTDGTYTIT 366 (1165)
T ss_pred EEe-ccceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcC----------cccceEcccceEEeee-eeccCcEEEE
Confidence 222 111111223344445554443322110011111111111 1112333578888875 3567999999
Q ss_pred EEeCCCcccccCCCeEEEEEccccCCcceEEeccCccccccCCceEEEEEEecCCCCCcccccceeEEEEEecCCCcccc
Q 002057 254 ISDEKHNKSVSNMPYTYTVFVGYCNGSSSVVNGSGLNDSVAGETAHFSVYLNDMFQYPYPVEVERLQVQIAREVDSSTVW 333 (974)
Q Consensus 254 V~~~~~~~~I~gSPf~~~V~~g~~d~skv~a~G~GL~~~~~g~~a~F~V~~rda~~~~~~~~~~~l~V~I~~~~ds~~v~ 333 (974)
.. +. |..=||.+++|.|..+.-....+.+.- ++|+...|. +. ....+...+.++.
T Consensus 367 a~--ke--hlqFstv~~kv~pntasLpdI~a~~fd----iCGqV~~~~---k~----------~nv~lt~~~s~~k---- 421 (1165)
T KOG1948|consen 367 AK--KE--HLQFSTVHAKVKPNTASLPDITAQKFD----ICGQVEKSE---KG----------VNVKLTFTRSDDK---- 421 (1165)
T ss_pred Ee--cc--ceeeeeEEEEecCCcccccccccccee----eeeEEEEcc---cc----------ceeEEEEccCccc----
Confidence 98 43 789999999988663322223332211 233322221 00 0011122222221
Q ss_pred CCCCCceeeecCCCeEEEEEecCCCeeEEEEEEECceE
Q 002057 334 PSISPTQIYNVQASAFDVTYTPEKSGIYKILVLCANIV 371 (974)
Q Consensus 334 p~~~p~~i~d~~dG~y~VsYtP~~~G~Y~I~V~~~~~~ 371 (974)
..+++.+.-||.|-. |..||.|+|.++.....
T Consensus 422 ---~s~~~t~etdGsfCf---~vppG~ytievl~~ta~ 453 (1165)
T KOG1948|consen 422 ---RSLEITPETDGSFCF---PVPPGLYTIEVLDKTAS 453 (1165)
T ss_pred ---cccccccccCCceeE---EcCCccEEEEEeccCcc
Confidence 112344556676643 67789999998887654
No 22
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=89.59 E-value=20 Score=36.44 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=31.2
Q ss_pred EcCCCCCeeeeEEEE-EEEcCCCCeeEEEEE--EEEecCCCccc
Q 002057 544 YTPFKDYIGNDSFSY-TIADVNGNLATAAVN--ISVLSIPPQFV 584 (974)
Q Consensus 544 YtP~~~f~G~DsFtY-tV~D~~G~~~tatVt--VtV~nd~P~~v 584 (974)
|.-..--.|..+++. ++.|..|+..+.++. +.|.+.||++.
T Consensus 7 fd~~~l~dG~Y~l~~~~a~D~agN~~~~~~~~~~~iD~T~Ptis 50 (158)
T PF13750_consen 7 FDLSTLPDGSYTLTVVTATDAAGNTSTSTVSETFTIDNTPPTIS 50 (158)
T ss_pred EEeCcCCCccEEEEEEEEEecCCCEEEEEEeeEEEEcCCCCEEE
Confidence 333334479999999 899999998877765 77779999754
No 23
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=88.96 E-value=2 Score=39.67 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=50.4
Q ss_pred ceeEeCCeeEEEEEeccCCCCcccccccccccceEEEEEEeCCCCcccceeEec-eeCCCceEEEEE-EecCC--eeEEE
Q 002057 70 NEFEAGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYANGSALTPNITNM-GLNEVGYIIIEF-ILMKA--GNFSL 145 (974)
Q Consensus 70 ~~~~aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~-~~n~dGt~~v~Y-~P~~~--G~Y~V 145 (974)
.-.++|++..|.+..|+..+ .. ..+....+.+.+.+++|....-. .. ..+..|.+..+| +|..+ |.|.|
T Consensus 9 ~iYrPGetV~~~~~~~~~~~-~~----~~~~~~~~~v~i~dp~g~~v~~~--~~~~~~~~G~~~~~~~lp~~~~~G~y~i 81 (99)
T PF01835_consen 9 PIYRPGETVHFRAIVRDLDN-DF----KPPANSPVTVTIKDPSGNEVFRW--SVNTTNENGIFSGSFQLPDDAPLGTYTI 81 (99)
T ss_dssp SEE-TTSEEEEEEEEEEECT-TC----SCESSEEEEEEEEETTSEEEEEE--EEEETTCTTEEEEEEE--SS---EEEEE
T ss_pred cCcCCCCEEEEEEEEecccc-cc----ccccCCceEEEEECCCCCEEEEE--EeeeeCCCCEEEEEEECCCCCCCEeEEE
Confidence 45789999999999988762 11 01123578899999988762111 12 246899999999 56654 99999
Q ss_pred EEEEC
Q 002057 146 HVEAG 150 (974)
Q Consensus 146 ~V~~~ 150 (974)
.+..+
T Consensus 82 ~~~~~ 86 (99)
T PF01835_consen 82 RVKTD 86 (99)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 99994
No 24
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=88.14 E-value=1.7 Score=55.90 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=69.6
Q ss_pred CCCCeeEEecCCccceeEeCCeeEEEEEeccCCCCcccccccccccceEEEEEEeCC-------------------CCc-
Q 002057 56 LNPSVCVASWMGLINEFEAGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYAN-------------------GSA- 115 (974)
Q Consensus 56 ~~~s~~~a~g~g~~~~~~aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~-------------------g~~- 115 (974)
.||+||...-. ...++.|.++++++.+||.||..+. .++++|++.-.- |+.
T Consensus 1981 aD~qK~sL~Ln--~DDi~~G~~tTitv~~KDQY~~~V~-------~PnmkVEV~A~v~qkk~S~q~~Qa~~~~~iP~S~~ 2051 (3738)
T KOG1428|consen 1981 ADPQKTSLILN--KDDIRCGWPTTITVQTKDQYGDVVH-------VPNMKVEVKAVVSQKKMSLQQDQAKKPQRIPGSPA 2051 (3738)
T ss_pred cChhhceeeec--cCceeecCceEEEEEeccccCCEee-------cCCceEEEEEeeccCCcchhhhhhcCcCcCCCCcc
Confidence 46777765432 1367889999999999999986652 235666555311 110
Q ss_pred ------cc------------------------ceeE-----------eceeCCCceEEEEEEecCCeeEEEEEEECCeec
Q 002057 116 ------LT------------------------PNIT-----------NMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTL 154 (974)
Q Consensus 116 ------~~------------------------~~~~-----------~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I 154 (974)
++ +++. -+.-|+||+|...|+|...|.|.++|+.+|-.|
T Consensus 2052 v~aa~yePmIVk~aRYiaIt~M~vYeNYS~EElRf~~~~~k~~se~m~ir~nnd~~y~~nWTP~a~G~Y~l~~tiDG~eI 2131 (3738)
T KOG1428|consen 2052 VTAASYEPMIVKEARYIAITMMKVYENYSFEELRFASPTPKRPSENMLIRVNNDGTYCANWTPGAIGLYTLHVTIDGIEI 2131 (3738)
T ss_pred cccCCCCceeecchhhhhhhhhhhhhcccHhhhcccCCCcccccccceEEecCCCceecccCCccceeEEEEEEecceee
Confidence 00 0000 034578999999999999999999999999999
Q ss_pred CCCCeeEEecC
Q 002057 155 NGSPLPFKVNP 165 (974)
Q Consensus 155 ~gSPf~v~V~p 165 (974)
. .-++|+|..
T Consensus 2132 d-~~~eVkVkd 2141 (3738)
T KOG1428|consen 2132 D-AGLEVKVKD 2141 (3738)
T ss_pred c-cceEEEecc
Confidence 7 458888865
No 25
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=88.11 E-value=1.3 Score=36.47 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=36.5
Q ss_pred eCcEEEEcCCCCCeeeeEEEEEEEcCCCCeeEE-EEEEEEecCCC
Q 002057 538 YGRIFRYTPFKDYIGNDSFSYTIADVNGNLATA-AVNISVLSIPP 581 (974)
Q Consensus 538 ~~g~~tYtP~~~f~G~DsFtYtV~D~~G~~~ta-tVtVtV~nd~P 581 (974)
.+|.|+|++...-.|...|+.++.|..|+.++. .++|+|...+|
T Consensus 10 ~~G~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~tiDttaP 54 (54)
T PF13754_consen 10 SDGNWSFTVPALADGTYTITVTATDAAGNTSTSSSVTFTIDTTAP 54 (54)
T ss_pred CCCcEEEeCCCCCCccEEEEEEEEeCCCCCCCccceeEEEeCCCC
Confidence 478999998877899999999999999998766 56677765555
No 26
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=87.69 E-value=3.5 Score=38.46 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=45.0
Q ss_pred eCCeeEEEEEeccCCCCcccccccccccceEEEEE--EeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECC
Q 002057 74 AGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSA--LYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGN 151 (974)
Q Consensus 74 aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v--~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~ 151 (974)
.++...+++..+|++||.+. +..|.+ ....+......- ...-+.+|.+.+.|+...+|.|.|...+++
T Consensus 21 g~~~~tltatV~D~~gnpv~---------g~~V~f~~~~~~~~l~~~~~-~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 21 GSDTNTLTATVTDANGNPVP---------GQPVTFSSSSSGGTLSPTNT-SATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp SSS-EEEEEEEEETTSEB-T---------S-EEEE--EESSSEES-CEE--EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred CcCcEEEEEEEEcCCCCCCC---------CCEEEEEEcCCCcEEecCcc-ccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 35778888999999998873 345555 334444432210 112478999999999999999999999877
Q ss_pred ee
Q 002057 152 QT 153 (974)
Q Consensus 152 ~~ 153 (974)
..
T Consensus 91 ~~ 92 (100)
T PF02369_consen 91 GS 92 (100)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 27
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=85.29 E-value=7.8 Score=43.81 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=29.0
Q ss_pred eeeeEEEEEEEcCCCCeeEEEEEEEEecCCCcc
Q 002057 551 IGNDSFSYTIADVNGNLATAAVNISVLSIPPQF 583 (974)
Q Consensus 551 ~G~DsFtYtV~D~~G~~~tatVtVtV~nd~P~~ 583 (974)
.|..++++++.|..|+.++.+.+|+|.+.+|.+
T Consensus 11 d~~~~v~vt~tD~aGN~~~~t~~~~vDt~~P~v 43 (317)
T PF13753_consen 11 DGTYTVSVTVTDAAGNTSTATQSITVDTTAPTV 43 (317)
T ss_pred CCcEEEEEEEEeCCCCeeeeeEEEEEecCCCce
Confidence 477899999999999999999999999888854
No 28
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=81.70 E-value=22 Score=36.12 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCCCeeeeEEEEEEEcCCCCeeEEEEEEEEe
Q 002057 546 PFKDYIGNDSFSYTIADVNGNLATAAVNISVL 577 (974)
Q Consensus 546 P~~~f~G~DsFtYtV~D~~G~~~tatVtVtV~ 577 (974)
|.-...+..+++-++.|..|+..+.+++....
T Consensus 117 psle~~~~YtLtV~a~D~aGN~~~~si~F~y~ 148 (158)
T PF13750_consen 117 PSLEADDSYTLTVSATDKAGNQSTKSISFSYM 148 (158)
T ss_pred CCcCCCCeEEEEEEEEecCCCEEEEEEEEEEe
Confidence 44445678899999999999999999998885
No 29
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=77.09 E-value=8 Score=38.40 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=26.9
Q ss_pred eEEEEEEEcCCCCeeEEEEEEEEecCCCccc
Q 002057 554 DSFSYTIADVNGNLATAAVNISVLSIPPQFV 584 (974)
Q Consensus 554 DsFtYtV~D~~G~~~tatVtVtV~nd~P~~v 584 (974)
-.|.++++|..|..++++++|+|..|.|++.
T Consensus 87 l~~~v~a~D~DGD~s~~~l~VtI~DD~P~~~ 117 (137)
T TIGR03660 87 LNFPIIATDFDGDTSSITLPVTIVDDVPTIT 117 (137)
T ss_pred EeeeEEEEeCCCCccccEEEEEEECCCCeec
Confidence 4688999999999999999999999999654
No 30
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=76.98 E-value=18 Score=33.08 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=45.1
Q ss_pred CeeEEEEEeccCCCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECC
Q 002057 76 NKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGN 151 (974)
Q Consensus 76 ~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~ 151 (974)
+.+.+.+..+|..||.+... .+++++.++ +.. .+.-....-+.+|.+.+.++...+|.+.|.+...+
T Consensus 18 d~~~i~v~v~D~~Gnpv~~~-------~V~f~~~~~-~~~-~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~ 84 (92)
T smart00634 18 DAITLTATVTDANGNPVAGQ-------EVTFTTPSG-GAL-TLSKGTATTDANGIATVTLTSTTAGVYTVTASLEN 84 (92)
T ss_pred ccEEEEEEEECCCCCCcCCC-------EEEEEECCC-cee-eccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECC
Confidence 67889999999999887421 344444332 111 01100112367999999999999999999988765
No 31
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=76.12 E-value=2.3e+02 Score=36.10 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.5
Q ss_pred CCCceEEEEEEecCCeeEEEEEEECCeecC
Q 002057 126 NEVGYIIIEFILMKAGNFSLHVEAGNQTLN 155 (974)
Q Consensus 126 n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~ 155 (974)
..+|.| +|.+.-||+|.|.-.+..-++.
T Consensus 153 ~~~Gky--~f~~iiPG~Yev~ashp~w~~~ 180 (1165)
T KOG1948|consen 153 EDGGKY--EFRNIIPGKYEVSASHPAWECI 180 (1165)
T ss_pred cCCCeE--EEEecCCCceEEeccCcceeEe
Confidence 467887 7999999999998776554443
No 32
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=76.02 E-value=3.7e+02 Score=38.40 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=101.3
Q ss_pred eEEEEEEeecccCCccccCCCcEEEEEEcCCCCCceeeEEecCCCccEEE----EEEEeeeeeeEEEeecCCCcc--ccc
Q 002057 406 THEIVVQLLDSYSNPVLSQQSGLKLEITSMNSSGFSSWMFVDNNDGSYSG----HYLAMDVGTYEMCVSYDGTNF--SLC 479 (974)
Q Consensus 406 ~~~f~V~~~D~~~n~v~~~~~~Ltv~i~s~~~~~~~~~~i~~n~dGtYtv----~y~~~dsgtYtV~~~~g~~~~--~~~ 479 (974)
+..+.++..+++. +...+.+++++-+.+ . ....-++..+|.--+ +|.-.+-+...|...+.|..+ ..+
T Consensus 862 p~gt~~~~l~A~d-~diGq~~kvry~l~~--~---~v~~rvd~~sGavfi~~~LDf~k~~fynLsv~a~d~g~p~lss~c 935 (4289)
T KOG1219|consen 862 PYGTVTWQLVALD-PDIGQLGKVRYYLTD--D---TVGERVDFPSGAVFIGKPLDFEKSDFYNLSVTAVDRGTPILSSIC 935 (4289)
T ss_pred CCceEEEEhhhcC-cccCcCceeEEEEec--C---ccccccccccccEEEecccccccccceEEEEEEecCCCcceeeeE
Confidence 3444444444432 444556666665553 1 112345555665432 466666677777777777663 344
Q ss_pred ccceeeccc--ccCCccccc---eEEeecCCc---EEEecccccccCC--CceEEEEEecCCceeEEEe--CcEEEEcCC
Q 002057 480 PFLVNVYSS--QYFPKAYDD---KVSVWEDES---IALDALANDYFAG--NNASIIEFSKPVRGSLLQY--GRIFRYTPF 547 (974)
Q Consensus 480 pvtV~v~~~--n~~PvA~dD---~~~~~ed~~---v~i~vLaND~D~g--~~l~i~~v~~p~~G~v~~~--~g~~tYtP~ 547 (974)
.+.|.+.+. |.-|..-++ ...+.|+.+ ..+.+-|-|.|.| ..|+....+....|.+.++ .|+++-+-.
T Consensus 936 hl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT~vi~i~A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~ 1015 (4289)
T KOG1219|consen 936 HLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGTIVIRIQARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKA 1015 (4289)
T ss_pred EEEEEEeccCCCCCCcchheeeeeeeEeecCCcceEEEEEEEecCCCCccceEEEEEEcCCcceeEEecCCcceEeechh
Confidence 555555543 322333333 346788865 5667779998854 3577766777778888887 477776654
Q ss_pred C--CCeeeeEEEEEEEcCCC--CeeEEEEEEEEe--cCCC
Q 002057 548 K--DYIGNDSFSYTIADVNG--NLATAAVNISVL--SIPP 581 (974)
Q Consensus 548 ~--~f~G~DsFtYtV~D~~G--~~~tatVtVtV~--nd~P 581 (974)
- .+.-.+.|+|...|-.- .++-..|.|.|. ||.+
T Consensus 1016 lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~ 1055 (4289)
T KOG1219|consen 1016 LDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNV 1055 (4289)
T ss_pred hchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCC
Confidence 3 34567889999999642 234577888886 6543
No 33
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.32 E-value=4.4e+02 Score=38.39 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.2
Q ss_pred eeeeEEEEEEEcCCCCeeEEEEEEEEe
Q 002057 551 IGNDSFSYTIADVNGNLATAAVNISVL 577 (974)
Q Consensus 551 ~G~DsFtYtV~D~~G~~~tatVtVtV~ 577 (974)
.|+++.+-+++|..| +++++++|.|.
T Consensus 1567 pGtYtVtLTvtN~~G-s~~~T~~i~V~ 1592 (2740)
T TIGR00864 1567 VGTFNIIVTAENDVG-AAQASIFLFVL 1592 (2740)
T ss_pred CceEEEEEEEecCCC-ccceeEEEEEe
Confidence 599999999999985 46777777775
No 34
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=73.18 E-value=26 Score=32.77 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=39.7
Q ss_pred eeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCceEEEEEeeCCceeEEEEEEeCCCcccccCCCe
Q 002057 189 KMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPGVQLFSYTIEESGNFLLTISDEKHNKSVSNMPY 268 (974)
Q Consensus 189 ~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG~~~vsf~P~~~G~y~v~V~~~~~~~~I~gSPf 268 (974)
.+.+....||++||.+.|+..+...-.+. ..++. .+.+. .|.|..+.+=+.+|++.|.=..+ |+++..-|-
T Consensus 22 ta~LTfta~D~~g~pvsGl~~l~f~~~g~--~vtls----~itE~-~GvYtATl~Gt~~G~vtI~P~v~--G~~l~~~~~ 92 (99)
T PF09134_consen 22 TATLTFTARDANGNPVSGLSVLAFVQDGV--PVTLS----PITEN-PGVYTATLKGTSAGEVTITPQVN--GQPLATLQK 92 (99)
T ss_dssp -EEEEEE-B-TTS-B--S--SEEEEEEES----EE-------EE--SS-EEEEEE-SS-EEEEEEEEET--TEE-GGG-E
T ss_pred eEEEEEEEEcCCCCcccCceeEEEEccCC--CcEEc----ccccc-CCEEEEEEEcccCceEEEEEeeC--CEEccccce
Confidence 35677788999999999886332211121 22221 14453 58999999999999999998854 567887777
Q ss_pred EEEEEc
Q 002057 269 TYTVFV 274 (974)
Q Consensus 269 ~~~V~~ 274 (974)
+++..|
T Consensus 93 k~tl~~ 98 (99)
T PF09134_consen 93 KLTLIP 98 (99)
T ss_dssp EEEEE-
T ss_pred eEEEee
Confidence 776553
No 35
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=72.57 E-value=28 Score=32.41 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=42.6
Q ss_pred CCceEEEEEEecCCCCCcccccceeEEEE--EecCCCccccCCCCCceeeecCCCeEEEEEecCCCeeEEEEEEECceE
Q 002057 295 GETAHFSVYLNDMFQYPYPVEVERLQVQI--AREVDSSTVWPSISPTQIYNVQASAFDVTYTPEKSGIYKILVLCANIV 371 (974)
Q Consensus 295 g~~a~F~V~~rda~~~~~~~~~~~l~V~I--~~~~ds~~v~p~~~p~~i~d~~dG~y~VsYtP~~~G~Y~I~V~~~~~~ 371 (974)
++...+++..+|++|||.+ ...|.+ ..... .+.+. .-...-..+|.+.++|+...+|.|.|...+.+..
T Consensus 22 ~~~~tltatV~D~~gnpv~----g~~V~f~~~~~~~--~l~~~--~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~ 92 (100)
T PF02369_consen 22 SDTNTLTATVTDANGNPVP----GQPVTFSSSSSGG--TLSPT--NTSATTDSNGIATVTLTSTKAGTYTVTATVDGGS 92 (100)
T ss_dssp SS-EEEEEEEEETTSEB-T----S-EEEE--EESSS--EES-C--EE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEE
T ss_pred cCcEEEEEEEEcCCCCCCC----CCEEEEEEcCCCc--EEecC--ccccEECCCEEEEEEEEecCceEEEEEEEECCcc
Confidence 4667788888999999764 345555 22222 22211 0023457889999999999999999999998753
No 36
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=72.55 E-value=1.9e+02 Score=33.55 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=64.3
Q ss_pred eCCceEEEEEeeCC-ceeEEEEEEeC--------CCcccccCCCeEEEEEccccCCcceEEeccCccccccCCceEEEEE
Q 002057 233 VAPGVQLFSYTIEE-SGNFLLTISDE--------KHNKSVSNMPYTYTVFVGYCNGSSSVVNGSGLNDSVAGETAHFSVY 303 (974)
Q Consensus 233 ~~dG~~~vsf~P~~-~G~y~v~V~~~--------~~~~~I~gSPf~~~V~~g~~d~skv~a~G~GL~~~~~g~~a~F~V~ 303 (974)
-+||.|+..+.-.. ||+|.+.|.-+ .+.-.|...|+.+++.... ++ +.+-.+.|.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~~-~~---------------~~~h~l~v~ 231 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQSE-DE---------------SGAHQLMVD 231 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEccC-CC---------------CCceEEEEE
Confidence 36899999986655 99999998622 1122455667766665331 10 122233333
Q ss_pred EecCCCCCcccccceeEEEEEecCCCccccCCCCCceeeecCCC-eEEEEEecCCCeeEEEEEEECceEecCCCceEEEE
Q 002057 304 LNDMFQYPYPVEVERLQVQIAREVDSSTVWPSISPTQIYNVQAS-AFDVTYTPEKSGIYKILVLCANIVLNGGHSFTKEV 382 (974)
Q Consensus 304 ~rda~~~~~~~~~~~l~V~I~~~~ds~~v~p~~~p~~i~d~~dG-~y~VsYtP~~~G~Y~I~V~~~~~~i~GgsPF~~~V 382 (974)
..+. ....+.-.+.+.+.+|++.. +........+ ....-=.+.+.|.|.+....=+..+. |.+|.+.+
T Consensus 232 ~d~~---~i~~~s~~~~~~~~~P~g~~-------~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt~~-GRe~~~~l 300 (374)
T TIGR03503 232 ADAG---HIDPGSLVIHGELVFPNGQI-------QQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTTIT-GRELQLTL 300 (374)
T ss_pred cccc---eeccccEEEEEEEECCCCce-------EEecccCccCceEEeccCcCCCeEEEEEEEEEEecCC-CCEEEEEc
Confidence 2110 11111112334445555421 1111111111 22222234588999998777666665 88888776
Q ss_pred Ec
Q 002057 383 TA 384 (974)
Q Consensus 383 ~~ 384 (974)
..
T Consensus 301 pe 302 (374)
T TIGR03503 301 PE 302 (374)
T ss_pred CC
Confidence 53
No 37
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=72.21 E-value=5.7 Score=35.30 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=23.8
Q ss_pred eeeeEEEEEEEcCCCCeeEEEEEEEE
Q 002057 551 IGNDSFSYTIADVNGNLATAAVNISV 576 (974)
Q Consensus 551 ~G~DsFtYtV~D~~G~~~tatVtVtV 576 (974)
.|.-.++|++.|..|+.+++++.|+|
T Consensus 56 ~G~t~V~ytA~D~~GN~a~C~f~V~V 81 (81)
T PF02494_consen 56 VGTTTVTYTATDAAGNSATCSFTVTV 81 (81)
T ss_pred eceEEEEEEEEECCCCEEEEEEEEEC
Confidence 48889999999999999999999986
No 38
>PF13115 YtkA: YtkA-like
Probab=71.63 E-value=21 Score=31.93 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=36.7
Q ss_pred EEEEeeccccCCCCCceeeeEEEEEecC-CCeeecccceeeEEeCCceEEEEEeeCCceeEEEEE
Q 002057 191 EIFIHQLDQYGNLVPGFYAFDADVVEKE-TNLSIPVADLQFEEVAPGVQLFSYTIEESGNFLLTI 254 (974)
Q Consensus 191 ~f~i~~~da~gn~v~g~~~f~v~v~~~~-~~~s~p~~~~~~~~~~dG~~~vsf~P~~~G~y~v~V 254 (974)
+|.++ .++.|..+.+.. +.+.+.-+. .+..-........+.++|.|.++....++|.|.|.|
T Consensus 23 ~i~v~-~~~~g~pv~~a~-V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 23 TITVT-VDQGGKPVTDAD-VQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred EEEEE-ECCCCCCCCCCE-EEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 35555 666666666442 344333322 111100112235557899999999999999999987
No 39
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=71.47 E-value=58 Score=29.19 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=51.2
Q ss_pred EEeecCC---cEEEecccccccC--CCceEEEEEecCCceeEEEe--CcEEEEcCCCCC--eeeeEEEEEEEcCC-C--C
Q 002057 499 VSVWEDE---SIALDALANDYFA--GNNASIIEFSKPVRGSLLQY--GRIFRYTPFKDY--IGNDSFSYTIADVN-G--N 566 (974)
Q Consensus 499 ~~~~ed~---~v~i~vLaND~D~--g~~l~i~~v~~p~~G~v~~~--~g~~tYtP~~~f--~G~DsFtYtV~D~~-G--~ 566 (974)
+++.|+. .....+.+.|.|. ...+..........+.+.++ .|.+.-.-.-++ .....|+-.++|.. + .
T Consensus 3 ~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~~ 82 (93)
T PF00028_consen 3 FSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPPL 82 (93)
T ss_dssp EEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSEE
T ss_pred EEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCCCC
Confidence 4566663 4566777888883 44566655555557778886 477777655566 46677888888983 2 2
Q ss_pred eeEEEEEEEE
Q 002057 567 LATAAVNISV 576 (974)
Q Consensus 567 ~~tatVtVtV 576 (974)
+++++|+|+|
T Consensus 83 ~~~~~V~I~V 92 (93)
T PF00028_consen 83 SSTATVTINV 92 (93)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 4566777766
No 40
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=71.45 E-value=28 Score=31.91 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=45.2
Q ss_pred cCCceEEEEEEecCCCCCcccccceeEEEEEecCCCccccCCCCCcee-eecCCCeEEEEEe-cCCC--eeEEEEEEEC
Q 002057 294 AGETAHFSVYLNDMFQYPYPVEVERLQVQIAREVDSSTVWPSISPTQI-YNVQASAFDVTYT-PEKS--GIYKILVLCA 368 (974)
Q Consensus 294 ~g~~a~F~V~~rda~~~~~~~~~~~l~V~I~~~~ds~~v~p~~~p~~i-~d~~dG~y~VsYt-P~~~--G~Y~I~V~~~ 368 (974)
.|+...|.+.+|+..+.........+.+.|..|++.. +. .... .....|.+..+|. |..+ |.|.|.++..
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~-v~----~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNE-VF----RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEE-EE----EEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCE-EE----EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 5788888888887662112334466788888886521 11 0112 2356799999999 5554 9999999994
No 41
>PF05895 DUF859: Siphovirus protein of unknown function (DUF859); InterPro: IPR008577 This entry is represented by Streptococcus phage 7201, Orf39. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several uncharacterised proteins from a number of the Siphoviruses as well as some bacterial proteins from Streptococcus species. Some of the members of this family are described as putative minor structural proteins.
Probab=67.74 E-value=3.2e+02 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred CCCCeeeeEEEEEEEcCCCCc--eEEEEEEEeeCCCCCee
Q 002057 679 NENFYGEDTIRVSARNKNGKN--DLAVPVFVDPVNDPPFI 716 (974)
Q Consensus 679 ~~~f~G~dsftytV~D~~g~~--tatV~ItV~pvNd~P~~ 716 (974)
.-++.|+.+|+-+|+|..|.. ..+++|+|.+-.- |.+
T Consensus 293 ~~n~~G~~Ti~atVtDSRGr~S~~~~~tItVl~Y~~-P~l 331 (624)
T PF05895_consen 293 SVNFSGSATIRATVTDSRGRTSDPKTKTITVLEYSP-PTL 331 (624)
T ss_pred eeccCceEEEEEEEEECCCccCCceEEEEEEEEcCC-CcE
Confidence 447899999999999999984 4788999998754 443
No 42
>PF13115 YtkA: YtkA-like
Probab=66.85 E-value=40 Score=30.07 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=40.1
Q ss_pred eEeCCeeEEEEEeccCCCCcccccccccccceEEEEEEeCC--CCc-ccceeEeceeCCCceEEEEEEecCCeeEEEEE
Q 002057 72 FEAGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYAN--GSA-LTPNITNMGLNEVGYIIIEFILMKAGNFSLHV 147 (974)
Q Consensus 72 ~~aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~--g~~-~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V 147 (974)
.+.|+. .|.|. +|..|..+..+ .+.+++.-+. |.. ...... ....++|.|.++.....+|.|.|.|
T Consensus 17 ~~~g~~-~i~v~-~~~~g~pv~~a-------~V~~~~~m~~~~g~~~~~~~~~-~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 17 PKVGEN-TITVT-VDQGGKPVTDA-------DVQFEIWMPDMEGMEPMTSKVE-LEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred CcCCce-EEEEE-ECCCCCCCCCC-------EEEEEEEeCCCCCCCCCceeee-eecCCCCeEEEEeecCCCeeEEEEE
Confidence 355666 57777 67766555322 4555555543 221 111111 1224789999999999999999986
No 43
>PHA03105 EEV glycoprotein; Provisional
Probab=66.30 E-value=12 Score=37.41 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=40.0
Q ss_pred CceeeeeehhhhhHHHHH--HHHHHHH--hHhhhcccccc-----CcccccccccccccCCCCCCCCCCCCCCcccCccc
Q 002057 889 GAGVVIEFFMVFFLGVLL--LFFTCKC--AFLLVNERRSR-----GNSERSTAQIYQKQTPQEKTNSPDDDTTYFTGCCS 959 (974)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (974)
|.-|++=++|.||+-.++ |+|.||= -.+|+.+..+. |.+--++...-|++.+...++.++.||+. +|+-
T Consensus 2 ~~~iv~Y~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~~CIRLNSITYStn~~~~~~i~~~sst~~~SdWS~--~sgE 79 (188)
T PHA03105 2 GIVIVVYVVVPLSFIVLILYIFFICKNTIKKFLKKKKGKNICIRLNSITYSTNSIEKEDIKTGSSTISESDWSN--SSGE 79 (188)
T ss_pred ceEEEEeeehHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEeccEeeccCcchhccccccccccccccccc--Ccch
Confidence 455666666666665554 4567773 34454333222 22333555566777777777888889983 4443
No 44
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=64.99 E-value=52 Score=28.49 Aligned_cols=61 Identities=18% Similarity=0.059 Sum_probs=35.8
Q ss_pred ceEEEEEecCCceeEEEe--CcEEEEcCCCCCee--eeEEEEEEEcCCC--CeeEEEEEEEEe--cCCC
Q 002057 521 NASIIEFSKPVRGSLLQY--GRIFRYTPFKDYIG--NDSFSYTIADVNG--NLATAAVNISVL--SIPP 581 (974)
Q Consensus 521 ~l~i~~v~~p~~G~v~~~--~g~~tYtP~~~f~G--~DsFtYtV~D~~G--~~~tatVtVtV~--nd~P 581 (974)
.+....+..+..+.+.++ .|.++-.-.-++.- ...|.-.+.|..+ ..++++|+|+|. |+.|
T Consensus 10 ~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~ 78 (79)
T smart00112 10 KVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNA 78 (79)
T ss_pred EEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCC
Confidence 344444444444666665 34454444445543 4566666778765 567888888887 5544
No 45
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=61.88 E-value=72 Score=29.91 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=41.6
Q ss_pred CeeEEEEEeccCCCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeecC
Q 002057 76 NKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTLN 155 (974)
Q Consensus 76 ~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~ 155 (974)
+.+.++..+||++||.++.- ..+...-. |. .+.+..+.. +.|.|.....=+.+|++.|.=..+|+++.
T Consensus 21 dta~LTfta~D~~g~pvsGl------~~l~f~~~---g~--~vtls~itE-~~GvYtATl~Gt~~G~vtI~P~v~G~~l~ 88 (99)
T PF09134_consen 21 DTATLTFTARDANGNPVSGL------SVLAFVQD---GV--PVTLSPITE-NPGVYTATLKGTSAGEVTITPQVNGQPLA 88 (99)
T ss_dssp --EEEEEE-B-TTS-B--S--------SEEEEEE---ES----EE---EE--SS-EEEEEE-SS-EEEEEEEEETTEE-G
T ss_pred ceEEEEEEEEcCCCCcccCc------eeEEEEcc---CC--CcEEccccc-cCCEEEEEEEcccCceEEEEEeeCCEEcc
Confidence 67889999999999987432 11222111 21 244444444 45999999999999999999999999998
Q ss_pred CCCeeEEec
Q 002057 156 GSPLPFKVN 164 (974)
Q Consensus 156 gSPf~v~V~ 164 (974)
.=|-++...
T Consensus 89 ~~~~k~tl~ 97 (99)
T PF09134_consen 89 TLQKKLTLI 97 (99)
T ss_dssp GG-EEEEEE
T ss_pred ccceeEEEe
Confidence 767666543
No 46
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.92 E-value=5.5 Score=39.03 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=6.5
Q ss_pred hhhhHHHHHHHHHH
Q 002057 898 MVFFLGVLLLFFTC 911 (974)
Q Consensus 898 ~~~~~~~~~~~~~~ 911 (974)
++|.+.++|++|+|
T Consensus 6 ~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 6 AIIIVAILLFLFLF 19 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445555
No 47
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=59.17 E-value=82 Score=31.33 Aligned_cols=58 Identities=21% Similarity=0.076 Sum_probs=33.2
Q ss_pred eEEecCCCccEEEEEEEe-----------eeeeeEEEeecCCCcccccccceeecccccCCccccce-EEeecC
Q 002057 443 WMFVDNNDGSYSGHYLAM-----------DVGTYEMCVSYDGTNFSLCPFLVNVYSSQYFPKAYDDK-VSVWED 504 (974)
Q Consensus 443 ~~i~~n~dGtYtv~y~~~-----------dsgtYtV~~~~g~~~~~~~pvtV~v~~~n~~PvA~dD~-~~~~ed 504 (974)
.+++-+.+|+|++.-.++ -.|...+.+..|+.. ...+.|++. .+.|++.+.. +++.|+
T Consensus 58 ftvtl~~~GsYtftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s--~~~l~VtI~--DD~P~~~~~~~~~V~E~ 127 (137)
T TIGR03660 58 FTLTLNADGSYEFTLEGPLDHAAGSDELTLNFPIIATDFDGDTS--SITLPVTIV--DDVPTITDVDALTVDED 127 (137)
T ss_pred EEEEECCCccEEEEEcccccCCCCCceEEEeeeEEEEeCCCCcc--ccEEEEEEE--CCCCeeccccceEEecc
Confidence 456666788888654322 234455555555543 346667664 3568776654 555554
No 48
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=56.55 E-value=42 Score=33.24 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=27.2
Q ss_pred CceEEEEEeeCCceeEEEEEEeCCCcccccCCC
Q 002057 235 PGVQLFSYTIEESGNFLLTISDEKHNKSVSNMP 267 (974)
Q Consensus 235 dG~~~vsf~P~~~G~y~v~V~~~~~~~~I~gSP 267 (974)
.....++|+|.+||.|..+-..-....|+|||=
T Consensus 99 Get~TitF~adKpG~Y~y~C~~HP~~~H~~~~~ 131 (135)
T TIGR03096 99 GETKTISFKADKAGAFTIWCQLHPKNIHLPGSL 131 (135)
T ss_pred CCeEEEEEECCCCEEEEEeCCCCChhhcCCCcc
Confidence 456789999999999999886556777899874
No 49
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=55.32 E-value=21 Score=35.33 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=30.8
Q ss_pred hhhhhCceeee-eehhhhhHHHHHHHHHHHHhHhhhcccccc
Q 002057 884 LAHTLGAGVVI-EFFMVFFLGVLLLFFTCKCAFLLVNERRSR 924 (974)
Q Consensus 884 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (974)
+..+.|+||.+ =|-+||.+|++--.++|-||+.-++ |++|
T Consensus 55 ~~~lsgtAIaGIVfgiVfimgvva~i~icvCmc~kn~-rgsR 95 (155)
T PF10873_consen 55 GDVLSGTAIAGIVFGIVFIMGVVAGIAICVCMCMKNS-RGSR 95 (155)
T ss_pred ccccccceeeeeehhhHHHHHHHHHHHHHHhhhhhcC-CCcc
Confidence 34555777753 4667999999999999999998777 5566
No 50
>PF06312 Neurexophilin: Neurexophilin
Probab=55.28 E-value=40 Score=36.18 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCCCceeeEEecCCCccEEEEEEEeeeeeeEEEeec
Q 002057 426 SGLKLEITSMNSSGFSSWMFVDNNDGSYSGHYLAMDVGTYEMCVSY 471 (974)
Q Consensus 426 ~~Ltv~i~s~~~~~~~~~~i~~n~dGtYtv~y~~~dsgtYtV~~~~ 471 (974)
|.+...|.++.-.....+.++|+++|||++.|.-..+|.-+|.+..
T Consensus 70 GDfrAri~s~~l~ag~~G~V~Dh~NGTYtv~F~L~W~G~v~vsV~L 115 (219)
T PF06312_consen 70 GDFRARIFSPKLKAGAAGKVTDHGNGTYTVSFPLLWPGQVSVSVSL 115 (219)
T ss_pred CCcEEEEecCCccccceEEEEECCCCeEEEEEEeecCceEEEEEEE
Confidence 4447777764444446789999999999999999999988877764
No 51
>PF06312 Neurexophilin: Neurexophilin
Probab=54.93 E-value=54 Score=35.18 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=37.1
Q ss_pred ceeeeEEEEEecCCCeeecccceeeEEeCCceEEEEEeeCCceeEEEEEE
Q 002057 206 GFYAFDADVVEKETNLSIPVADLQFEEVAPGVQLFSYTIEESGNFLLTIS 255 (974)
Q Consensus 206 g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG~~~vsf~P~~~G~y~v~V~ 255 (974)
|..+|.+.+..+....+++ -.|.|.++|+|.++|...=+|.-.|.|.
T Consensus 68 G~GDfrAri~s~~l~ag~~---G~V~Dh~NGTYtv~F~L~W~G~v~vsV~ 114 (219)
T PF06312_consen 68 GWGDFRARIFSPKLKAGAA---GKVTDHGNGTYTVSFPLLWPGQVSVSVS 114 (219)
T ss_pred CCCCcEEEEecCCccccce---EEEEECCCCeEEEEEEeecCceEEEEEE
Confidence 5467788877665443333 3489999999999999999999999997
No 52
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=53.12 E-value=59 Score=29.60 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=44.6
Q ss_pred eEEEEEEeecccCCccccCCCcEEEEEEcCCCCCceeeEEecCCCccEEEEEEEeeeeeeEEEeecCC
Q 002057 406 THEIVVQLLDSYSNPVLSQQSGLKLEITSMNSSGFSSWMFVDNNDGSYSGHYLAMDVGTYEMCVSYDG 473 (974)
Q Consensus 406 ~~~f~V~~~D~~~n~v~~~~~~Ltv~i~s~~~~~~~~~~i~~n~dGtYtv~y~~~dsgtYtV~~~~g~ 473 (974)
.+.+.+++.|..+||+... .+++.+.+...-........-+.+|...+.+.....|.++|.....+
T Consensus 19 ~~~i~v~v~D~~Gnpv~~~--~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~ 84 (92)
T smart00634 19 AITLTATVTDANGNPVAGQ--EVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLEN 84 (92)
T ss_pred cEEEEEEEECCCCCCcCCC--EEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECC
Confidence 4667788999999999763 37776654210011123445566898888888888899998877654
No 53
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=52.73 E-value=7.8 Score=34.18 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=34.3
Q ss_pred eeeeeccCCcc--hhhh--hhhCceeeeeehhhhhHHHHHHHHHHHHhHhhhccccccC
Q 002057 871 TVNLIRRRPMS--SVLA--HTLGAGVVIEFFMVFFLGVLLLFFTCKCAFLLVNERRSRG 925 (974)
Q Consensus 871 ~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (974)
|+.+|.-+|.- ||.+ .|-|.-++.--+++++-|++++...| |--+|...|+.++
T Consensus 18 tvT~IViSPviywSWDtVK~TTa~d~l~a~~iI~~~gv~~~~ly~-ffs~Ltkl~~~d~ 75 (84)
T PRK13718 18 TITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYF-FFSALTKLQKHDE 75 (84)
T ss_pred eeEEEEecceEEEEehhccccchhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhccc
Confidence 55667777775 4444 55566655556667888887766666 5666666666443
No 54
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=52.19 E-value=40 Score=28.37 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=31.3
Q ss_pred EEEcCCCCCeeeeEEEEEEEcCCCCeeEEEEEEEEe-cCCCc
Q 002057 542 FRYTPFKDYIGNDSFSYTIADVNGNLATAAVNISVL-SIPPQ 582 (974)
Q Consensus 542 ~tYtP~~~f~G~DsFtYtV~D~~G~~~tatVtVtV~-nd~P~ 582 (974)
....|..+..|..++.+++.|..|+..+....+.+. +.+|.
T Consensus 13 ~~~~P~~~~dg~yt~~v~a~D~AGN~~~~~~~~~i~d~~~p~ 54 (60)
T PF12245_consen 13 STVIPENDADGEYTLTVTATDKAGNTSSSTTQIVIVDNTAPA 54 (60)
T ss_pred eccccCccCCccEEEEEEEEECCCCEEEeeeEEEEEcCCCCC
Confidence 344487778999999999999999988766655554 66664
No 55
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=50.16 E-value=2.3e+02 Score=33.05 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCceEEEEEEcC-cceeEEEEEEECC----------eecCCCCeEEEEecCCCCCCeeEEecCCccceeEeCCeeEEEEE
Q 002057 15 ASTLSSASAAEL-AIGLFNVIIKDDL----------FEVLDSSLHFKVEPGRLNPSVCVASWMGLINEFEAGNKDRIMIL 83 (974)
Q Consensus 15 ~~~~~~v~Y~P~-~~G~h~v~V~~~g----------~~I~gSPf~v~V~~g~~~~s~~~a~g~g~~~~~~aG~~a~f~I~ 83 (974)
+.+.++.++.=. .+|.|.+.|.-++ +.|...|+++.+.... + +++.+ .+.|.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~~-~--------~~~~h--------~l~v~ 231 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQSE-D--------ESGAH--------QLMVD 231 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEccC-C--------CCCce--------EEEEE
Confidence 567777776444 6999999998765 4555666666665521 1 11222 22232
Q ss_pred eccCCCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeecCCCCeeEEe
Q 002057 84 PKDAFGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTLNGSPLPFKV 163 (974)
Q Consensus 84 ~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~gSPf~v~V 163 (974)
..+ ..+ .+++-.+.+++.+++|.. .+..+...+..++..-=.+.+.|.|.++.+.-+..+.|.||.+.+
T Consensus 232 ~d~---~~i-----~~~s~~~~~~~~~P~g~~---~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt~~GRe~~~~l 300 (374)
T TIGR03503 232 ADA---GHI-----DPGSLVIHGELVFPNGQI---QQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTTITGRELQLTL 300 (374)
T ss_pred ccc---cee-----ccccEEEEEEEECCCCce---EEecccCccCceEEeccCcCCCeEEEEEEEEEEecCCCCEEEEEc
Confidence 111 111 112234566677777763 121122123333332323449999999999989999999998876
No 56
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=49.75 E-value=51 Score=27.06 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=31.0
Q ss_pred ccceEEEecCCCCeeeeEEEEEEEcCCCCce--EEEEEEEe
Q 002057 670 ALQSIQYLGNENFYGEDTIRVSARNKNGKND--LAVPVFVD 708 (974)
Q Consensus 670 a~g~~~YtP~~~f~G~dsftytV~D~~g~~t--atV~ItV~ 708 (974)
++|.++|++...-.|.-.|+.++.|..|..+ ..+.|+|.
T Consensus 10 ~~G~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~tiD 50 (54)
T PF13754_consen 10 SDGNWSFTVPALADGTYTITVTATDAAGNTSTSSSVTFTID 50 (54)
T ss_pred CCCcEEEeCCCCCCccEEEEEEEEeCCCCCCCccceeEEEe
Confidence 4689999988888999999999999999853 34455554
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=49.15 E-value=57 Score=43.18 Aligned_cols=139 Identities=19% Similarity=0.162 Sum_probs=77.6
Q ss_pred EEEEecCCceEEEEEEcCcceeEEEEEEECCeecCCCCeEEEEecCCCCCCeeEEecCCccceeEeCCeeEEE-EEeccC
Q 002057 9 ILISLLASTLSSASAAELAIGLFNVIIKDDLFEVLDSSLHFKVEPGRLNPSVCVASWMGLINEFEAGNKDRIM-ILPKDA 87 (974)
Q Consensus 9 ~~~~~~~~~~~~v~Y~P~~~G~h~v~V~~~g~~I~gSPf~v~V~~g~~~~s~~~a~g~g~~~~~~aG~~a~f~-I~~rDa 87 (974)
++|+.-++++|...|+|...|.|++.++.+|..|. .-++|.|+..+- -..-.|.++.....--.+..+. ..++|.
T Consensus 2098 m~ir~nnd~~y~~nWTP~a~G~Y~l~~tiDG~eId-~~~eVkVkd~Pk---G~I~~~t~~~k~ks~~~~~kV~~~~akD~ 2173 (3738)
T KOG1428|consen 2098 MLIRVNNDGTYCANWTPGAIGLYTLHVTIDGIEID-AGLEVKVKDPPK---GMIPPGTQLVKPKSEPQPNKVRKFVAKDS 2173 (3738)
T ss_pred ceEEecCCCceecccCCccceeEEEEEEecceeec-cceEEEeccCCC---CccCCCccccCcccCCCCcccceeecccc
Confidence 57888889999999999999999999999999985 468888886321 1111122121111111111111 124565
Q ss_pred CCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEE-------EEEecCCeeEEEEEEECCeecCCCC
Q 002057 88 FGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIII-------EFILMKAGNFSLHVEAGNQTLNGSP 158 (974)
Q Consensus 88 ~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v-------~Y~P~~~G~Y~V~V~~~~~~I~gSP 158 (974)
-|=++..+. ....-+|-+.--+|.+..++- .+|+||.|.= .|.|.. |--.+--+.-+||+..|=
T Consensus 2174 aGlRiR~~~---sLqSeqiGiv~~~~~itFIdE---i~NDDG~WlRLnDET~~~Y~~N~-G~~eaWCLsf~q~L~ksL 2244 (3738)
T KOG1428|consen 2174 AGLRIRSHP---SLQSEQIGIVKVNGTITFIDE---IHNDDGVWLRLNDETIKKYVPNM-GYTEAWCLSFNQHLGKSL 2244 (3738)
T ss_pred ccceeecCC---ccccceeeEEEcCCEEEehhh---hcCCCceEEEechHHHHHhcCCC-Ccchhhhhhcchhccccc
Confidence 444432221 112223333333444433331 2589998853 577776 554443344577777663
No 58
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=48.82 E-value=1.1e+03 Score=34.33 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=43.9
Q ss_pred CCeeeeEEEEEEEcCCCCc--eEEEEEEEeeCCC-CCeeccCceEEeecCCC-------CceEecCCCCcEEEEEeCCC
Q 002057 681 NFYGEDTIRVSARNKNGKN--DLAVPVFVDPVND-PPFIQVPKYIVLKSDAD-------ESQIFDRETNKFNVSIGDPD 749 (974)
Q Consensus 681 ~f~G~dsftytV~D~~g~~--tatV~ItV~pvNd-~P~~~~p~~i~~~~n~d-------g~~~~~p~~d~~~ysv~D~~ 749 (974)
+|--.+.+.++|.-++|++ .+.+.|-|+-+|+ +|++..|...-+.+..+ +..+-.|.+-..+|+|.|.+
T Consensus 2040 d~e~ln~y~fkviAkd~gs~~~~eviV~vtv~nka~PvF~~~~y~avi~e~~tv~spvv~vqa~s~l~~kv~YsIldg~ 2118 (4289)
T KOG1219|consen 2040 DFENLNKYRFKVIAKDGGSVHRVEVIVHVTVENKAAPVFITPDYVAVIEELITVSSPVVHVQAASPLGLKVTYSILDGN 2118 (4289)
T ss_pred chhhcceeEEEEEEcCCCceeeeEEEEEEEEecCCCcceecCcEEEEeecccccccceeEEeecCCcCCceEEEEecCC
Confidence 5555555666666666655 4777777777885 68887777665444332 12222345667899999887
No 59
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=48.11 E-value=1.2e+02 Score=29.75 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=48.9
Q ss_pred eEEEEEEecCCCCCcccccceeEEEEEecCCCccccCCCCCceeeecCCCeEEEEEecCCCeeEEEEEEECceEecCCCc
Q 002057 298 AHFSVYLNDMFQYPYPVEVERLQVQIAREVDSSTVWPSISPTQIYNVQASAFDVTYTPEKSGIYKILVLCANIVLNGGHS 377 (974)
Q Consensus 298 a~F~V~~rda~~~~~~~~~~~l~V~I~~~~ds~~v~p~~~p~~i~d~~dG~y~VsYtP~~~G~Y~I~V~~~~~~i~GgsP 377 (974)
....|..+|..+.| +....+++.+.+|.++- ....+.+....+|.|........+|.|.+.+.+... +..
T Consensus 69 ~~~~i~~~d~~g~~--~~~~~~~l~l~rp~~~~----~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l~~~~~----~~~ 138 (146)
T PF05751_consen 69 NSLTIRLTDPNGAP--VSGAKLTLSLYRPTDAK----LDFTLTLTESAPGVYRAPVPLLKKGRWYLRLDWEPG----DKS 138 (146)
T ss_pred CeEEEEEEcCCCCc--CcCceEEEEEECCCCcc----CCeeEEeeECCCceEEEEcCCCCCccEEEEEEEecC----CCe
Confidence 56677777755543 44556778887777531 123344667888999999998899999999844432 445
Q ss_pred eEE
Q 002057 378 FTK 380 (974)
Q Consensus 378 F~~ 380 (974)
|+.
T Consensus 139 ~~~ 141 (146)
T PF05751_consen 139 WRL 141 (146)
T ss_pred EEE
Confidence 544
No 60
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=43.09 E-value=48 Score=26.82 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=24.2
Q ss_pred ecccceEEEecCCC-CeeeeEEEEEEEcCCC
Q 002057 668 SMALQSIQYLGNEN-FYGEDTIRVSARNKNG 697 (974)
Q Consensus 668 n~a~g~~~YtP~~~-f~G~dsftytV~D~~g 697 (974)
|+..|.|+-+|... -.|.-+|+.+++|+.|
T Consensus 19 d~~tG~isGtp~~~~~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 19 DPSTGTISGTPTSSVQPGTYTFTVTATDGSG 49 (49)
T ss_pred eCCCCEEEeecCCCccccEEEEEEEEEcCCC
Confidence 34567888888887 4599999999999876
No 61
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=41.51 E-value=1.8e+02 Score=28.86 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCceEEEEEEecCCeeEEEEEEE--CCeecCCC
Q 002057 127 EVGYIIIEFILMKAGNFSLHVEA--GNQTLNGS 157 (974)
Q Consensus 127 ~dGt~~v~Y~P~~~G~Y~V~V~~--~~~~I~gS 157 (974)
...+..++|++.+||.|..+=.+ ...|+|||
T Consensus 98 pGet~TitF~adKpG~Y~y~C~~HP~~~H~~~~ 130 (135)
T TIGR03096 98 AGETKTISFKADKAGAFTIWCQLHPKNIHLPGS 130 (135)
T ss_pred CCCeEEEEEECCCCEEEEEeCCCCChhhcCCCc
Confidence 45678899999999999976533 66778776
No 62
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=41.34 E-value=55 Score=30.44 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=14.7
Q ss_pred CceEEEEEeeCCceeEEEEEE
Q 002057 235 PGVQLFSYTIEESGNFLLTIS 255 (974)
Q Consensus 235 dG~~~vsf~P~~~G~y~v~V~ 255 (974)
.....++|+|.+||+|.++-.
T Consensus 73 g~~~~~~f~~~~~G~y~~~C~ 93 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEFYCT 93 (104)
T ss_dssp T-EEEEEEEE-S-EEEEEB-S
T ss_pred CCEEEEEEcCCCCEEEEEEcC
Confidence 346789999999999999876
No 63
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=40.85 E-value=1e+02 Score=26.78 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=26.8
Q ss_pred eEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCeec
Q 002057 103 NFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQTL 154 (974)
Q Consensus 103 ~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I 154 (974)
+..|.+....+.... . ..-+.+|.|.+.-+|. |.|.|.+...|..-
T Consensus 16 ~a~V~l~~~~~~~~~-~---~~Td~~G~f~~~~l~~--g~Y~l~v~~~g~~~ 61 (82)
T PF13620_consen 16 GATVTLTDQDGGTVY-T---TTTDSDGRFSFEGLPP--GTYTLRVSAPGYQP 61 (82)
T ss_dssp T-EEEET--TTTECC-E---EE--TTSEEEEEEE-S--EEEEEEEEBTTEE-
T ss_pred CEEEEEEEeeCCCEE-E---EEECCCceEEEEccCC--EeEEEEEEECCcce
Confidence 456666654333311 1 1236899999988776 99999998877643
No 64
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=39.66 E-value=1.2e+02 Score=27.19 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=39.2
Q ss_pred eeEeCCeeEEEEEeccCCCCcccccccccccceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEEC
Q 002057 71 EFEAGNKDRIMILPKDAFGNNVTSTSEELSSFNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAG 150 (974)
Q Consensus 71 ~~~aG~~a~f~I~~rDa~gn~i~~~~~~~~~~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~ 150 (974)
...+|++..|.+..+..+... ...+.|.+...........+..+.-.+.-++.+.|.+..+|.|.|.+..+
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~---------~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTAD---------AENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS----------BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCC---------CCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 456788888888776653211 24566666543222111122112223445677788888999999988774
Q ss_pred C
Q 002057 151 N 151 (974)
Q Consensus 151 ~ 151 (974)
.
T Consensus 85 ~ 85 (101)
T PF07705_consen 85 P 85 (101)
T ss_dssp T
T ss_pred e
Confidence 4
No 65
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.95 E-value=1.5e+02 Score=27.59 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=45.2
Q ss_pred eEEEEEEec-CCeeEEEEEEECCeecCCCCeeEEecCCCCCCcceEEeccccceeEEeeeeeEEEEeeccccCCC
Q 002057 130 YIIIEFILM-KAGNFSLHVEAGNQTLNGSPLPFKVNPGPVDVSNCVAKWKYEVAAWQIFSKMEIFIHQLDQYGNL 203 (974)
Q Consensus 130 t~~v~Y~P~-~~G~Y~V~V~~~~~~I~gSPf~v~V~pg~~d~s~~~~~g~~~~~~~~~g~~~~f~i~~~da~gn~ 203 (974)
++.|.|+=+ +-|+ +|+...=.++||.+++.-|. ++--|..+...++.|+++.+.|.+-=+||..
T Consensus 22 tvt~hYtg~L~dG~-----kfDSs~dr~kPfkf~IGkge-----VIkGwdegv~qmsvGekakLti~pd~aYG~~ 86 (108)
T KOG0544|consen 22 TVTVHYTGTLQDGK-----KFDSSRDRGKPFKFKIGKGE-----VIKGWDEGVAQMSVGEKAKLTISPDYAYGPR 86 (108)
T ss_pred EEEEEEEeEecCCc-----EeecccccCCCeeEEecCcc-----eeechhhcchhccccccceeeeccccccCCC
Confidence 666777644 3343 55555566799999997653 3334666777889999999999877777663
No 66
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=37.87 E-value=63 Score=27.03 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.8
Q ss_pred EEEEeeCCceeEEEEEEe
Q 002057 239 LFSYTIEESGNFLLTISD 256 (974)
Q Consensus 239 ~vsf~P~~~G~y~v~V~~ 256 (974)
.++|++..||.|.|.|+.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a 47 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRA 47 (66)
T ss_dssp EEEEES--SEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEE
Confidence 899999999999999973
No 67
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=36.95 E-value=1.4e+02 Score=26.42 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=22.1
Q ss_pred EecCCCCe-eeeEEEEEEEcCCCCc-eEEEEEEE
Q 002057 676 YLGNENFY-GEDTIRVSARNKNGKN-DLAVPVFV 707 (974)
Q Consensus 676 YtP~~~f~-G~dsftytV~D~~g~~-tatV~ItV 707 (974)
+.|...|. |.-.++|++.|..|.. +-+..|+|
T Consensus 48 ~~~g~~f~~G~t~V~ytA~D~~GN~a~C~f~V~V 81 (81)
T PF02494_consen 48 HPPGDLFPVGTTTVTYTATDAAGNSATCSFTVTV 81 (81)
T ss_pred CCCCceEeeceEEEEEEEEECCCCEEEEEEEEEC
Confidence 33444454 8889999999998875 45555554
No 68
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=33.12 E-value=3.5e+02 Score=23.97 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCCcccceeEeceeCCCceEEEEEE-------ecCCeeEEEEEEE
Q 002057 103 NFTVSALYANGSALTPNITNMGLNEVGYIIIEFI-------LMKAGNFSLHVEA 149 (974)
Q Consensus 103 ~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~-------P~~~G~Y~V~V~~ 149 (974)
+.+|.|...+|..+ +-.......-|.+.+.|- |..+|.|.+.|..
T Consensus 26 ~v~v~I~d~~G~~V--~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 26 NVTVTIYDSNGQVV--RTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEEEETTS-EE--EEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEEEcCCCCEE--EEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 45666666666541 110112233455555554 6666777766643
No 69
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=33.12 E-value=48 Score=27.74 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.1
Q ss_pred EEEEEecCCeeEEEEEEE
Q 002057 132 IIEFILMKAGNFSLHVEA 149 (974)
Q Consensus 132 ~v~Y~P~~~G~Y~V~V~~ 149 (974)
.+.|++..||.|.+.|+.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a 47 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRA 47 (66)
T ss_dssp EEEEES--SEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEE
Confidence 899999999999999977
No 70
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=31.35 E-value=75 Score=27.08 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=25.9
Q ss_pred ceEEEEEEeCCCCcccceeEeceeCCCceEEEEEEecCCeeEEEEEEECCee
Q 002057 102 FNFTVSALYANGSALTPNITNMGLNEVGYIIIEFILMKAGNFSLHVEAGNQT 153 (974)
Q Consensus 102 ~~~~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~ 153 (974)
..+.+.+...+|.. +. .++-++.-.|-...+|.|.|.+.+.++.
T Consensus 17 ~~~~v~at~~dG~~--~~------~~~~~vs~~~d~~~~G~y~Vt~~y~~~t 60 (67)
T PF07523_consen 17 TGLFVTATYSDGTS--LP------LSDVTVSGTVDTSKAGTYTVTYTYKGVT 60 (67)
T ss_dssp HCHEEEEEETTS-E--S-------GCCSEEES---TTS-CCEEEEEEECTEE
T ss_pred cCCEEEEEEcCCCE--ec------eeeeEEEeeeecCCCceEEEEEEECCEE
Confidence 34567777777775 21 1233344477889999999999999843
No 71
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=31.17 E-value=72 Score=29.47 Aligned_cols=56 Identities=9% Similarity=0.216 Sum_probs=28.5
Q ss_pred EEEEEeCCCCcccceeEeceeCCCceEEEEEEe-cCCeeEEEEEEE---CCeecCCC-CeeE
Q 002057 105 TVSALYANGSALTPNITNMGLNEVGYIIIEFIL-MKAGNFSLHVEA---GNQTLNGS-PLPF 161 (974)
Q Consensus 105 ~V~v~~~~g~~~~~~~~~~~~n~dGt~~v~Y~P-~~~G~Y~V~V~~---~~~~I~gS-Pf~v 161 (974)
.+.+.+++|.........+.. ....+.+.--+ ..+|.|.|.-+. +|.++.|+ .|.|
T Consensus 36 ~v~v~~~~g~~v~~~~~~~~~-~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~~G~~~F~V 96 (97)
T PF04234_consen 36 SVTVTDPDGKRVDLGEPTVDG-DGKTLTVPLPPPLPPGTYTVSWRVVSADGHPVSGSFSFTV 96 (97)
T ss_dssp EEEEEEEEETTSCTCEEEEEE-STTEEEEEESS---SEEEEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEcCCCceeecCcceecC-CceEEEEECCCCCCCceEEEEEEEEecCCCCcCCEEEEEE
Confidence 444445455442222221211 33567777666 788888887433 67777665 4433
No 72
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=30.77 E-value=2.6e+02 Score=26.95 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=42.4
Q ss_pred eEEeeeeeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCceEEEEEeeCCceeEEEEEEeCCCccc
Q 002057 183 AWQIFSKMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPGVQLFSYTIEESGNFLLTISDEKHNKS 262 (974)
Q Consensus 183 ~~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG~~~vsf~P~~~G~y~v~V~~~~~~~~ 262 (974)
...+|.+..|.+...|. ++.| .+|...+.+.-.+.-.-.+.|+|.+||.|.+.-..-+ |..
T Consensus 49 ~lp~g~~v~~~ltS~DV-------iHsf-----------~ip~~~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~C-G~g 109 (120)
T PF00116_consen 49 VLPAGQPVRFHLTSEDV-------IHSF-----------WIPELGIKMDAIPGRTNSVTFTPDKPGTYYGQCAEYC-GAG 109 (120)
T ss_dssp EEETTSEEEEEEEESSS--------EEE-----------EETTCTEEEEEBTTCEEEEEEEESSSEEEEEEE-SSS-STT
T ss_pred cccccceEeEEEEcCCc-------cccc-----------cccccCcccccccccceeeeeeeccCCcEEEcCcccc-CcC
Confidence 35667888888887773 3333 3343333343333345679999999999999875222 122
Q ss_pred ccCCCeEEEE
Q 002057 263 VSNMPYTYTV 272 (974)
Q Consensus 263 I~gSPf~~~V 272 (974)
=..+|+++.|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 4567777665
No 73
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=30.73 E-value=31 Score=31.44 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=23.5
Q ss_pred hCceeeeeehhhhhHHHHHHHHHHHHhHhhhcccc
Q 002057 888 LGAGVVIEFFMVFFLGVLLLFFTCKCAFLLVNERR 922 (974)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (974)
+|-.+++-|++|+||=++-+.|+=.|+++||-||-
T Consensus 37 vv~v~i~~lvaVg~~YL~y~~fLkDlIlv~KAkrq 71 (91)
T PF01708_consen 37 VVEVAIFTLVAVGCLYLAYTWFLKDLILVLKAKRQ 71 (91)
T ss_pred EeeeeehHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 34444444566666666666788889998887765
No 74
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=2.4e+02 Score=26.31 Aligned_cols=62 Identities=18% Similarity=0.347 Sum_probs=43.5
Q ss_pred CceEEEEEEcCcceeEEEEEEECCeec-----CCCCeEEEEecCCCCCCeeEEecCCccceeEeCCeeEEEEEeccCCCC
Q 002057 16 STLSSASAAELAIGLFNVIIKDDLFEV-----LDSSLHFKVEPGRLNPSVCVASWMGLINEFEAGNKDRIMILPKDAFGN 90 (974)
Q Consensus 16 ~~~~~v~Y~P~~~G~h~v~V~~~g~~I-----~gSPf~v~V~~g~~~~s~~~a~g~g~~~~~~aG~~a~f~I~~rDa~gn 90 (974)
.+.|.|.|+=+ ..+|..+ .++||+|++.-++ +.-.|.-+..+...|++|..+|.+-=|||.
T Consensus 20 Gqtvt~hYtg~---------L~dG~kfDSs~dr~kPfkf~IGkge-----VIkGwdegv~qmsvGekakLti~pd~aYG~ 85 (108)
T KOG0544|consen 20 GQTVTVHYTGT---------LQDGKKFDSSRDRGKPFKFKIGKGE-----VIKGWDEGVAQMSVGEKAKLTISPDYAYGP 85 (108)
T ss_pred CCEEEEEEEeE---------ecCCcEeecccccCCCeeEEecCcc-----eeechhhcchhccccccceeeeccccccCC
Confidence 45677777644 3344443 5689999998764 344565555677889999999998777774
Q ss_pred c
Q 002057 91 N 91 (974)
Q Consensus 91 ~ 91 (974)
+
T Consensus 86 ~ 86 (108)
T KOG0544|consen 86 R 86 (108)
T ss_pred C
Confidence 3
No 75
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=30.00 E-value=93 Score=26.84 Aligned_cols=31 Identities=35% Similarity=0.352 Sum_probs=24.4
Q ss_pred eeeEEEEEEEcCCCC---ceEEEEEEEeeCCCCC
Q 002057 684 GEDTIRVSARNKNGK---NDLAVPVFVDPVNDPP 714 (974)
Q Consensus 684 G~dsftytV~D~~g~---~tatV~ItV~pvNd~P 714 (974)
..-.|+..++|..+. ..++|.|.|..+||.|
T Consensus 45 ~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~ 78 (79)
T smart00112 45 PEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNA 78 (79)
T ss_pred CeEEEEEEEEECCCCCcccEEEEEEEEEECCCCC
Confidence 356788899998652 3699999999999865
No 76
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=29.05 E-value=1.2e+02 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=27.3
Q ss_pred cEEEEcCCCCCeeeeEEEEEEEcCCCCeeEEEEEEEE
Q 002057 540 RIFRYTPFKDYIGNDSFSYTIADVNGNLATAAVNISV 576 (974)
Q Consensus 540 g~~tYtP~~~f~G~DsFtYtV~D~~G~~~tatVtVtV 576 (974)
..+.|+-.. .|..+++.+++|..|.+.+++++|.|
T Consensus 47 ~~~~~~y~~--~G~y~v~l~v~d~~g~~~~~~~~V~V 81 (81)
T cd00146 47 PTVTHTYTK--PGTYTVTLTVTNAVGSSSTKTTTVVV 81 (81)
T ss_pred CceEEEcCC--CcEEEEEEEEEeCCCCEEEEEEEEEC
Confidence 455555433 79999999999999888888888875
No 77
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=26.84 E-value=27 Score=33.84 Aligned_cols=14 Identities=29% Similarity=0.486 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHH
Q 002057 897 FMVFFLGVLLLFFT 910 (974)
Q Consensus 897 ~~~~~~~~~~~~~~ 910 (974)
++.||+|++||-+-
T Consensus 85 ~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 85 PVLLSLGLMLLACS 98 (129)
T ss_pred HHHHHHHHHHHHhh
Confidence 34899999888764
No 78
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.61 E-value=3.1e+02 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=17.4
Q ss_pred CeEEEEEecC----CCeeEEEEEEE
Q 002057 347 SAFDVTYTPE----KSGIYKILVLC 367 (974)
Q Consensus 347 G~y~VsYtP~----~~G~Y~I~V~~ 367 (974)
+.|+|+++-+ ..|.|.|.++.
T Consensus 78 nkYQVSW~~e~k~a~sG~y~V~~fD 102 (167)
T PF05404_consen 78 NKYQVSWTEEHKKASSGTYEVKFFD 102 (167)
T ss_pred CceEEEEEechhhccCCceEEEEeC
Confidence 8899999955 56999998776
No 79
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=26.47 E-value=2e+02 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=25.8
Q ss_pred cCCCeEEEEEecCCCeeEEEEEEECceEe
Q 002057 344 VQASAFDVTYTPEKSGIYKILVLCANIVL 372 (974)
Q Consensus 344 ~~dG~y~VsYtP~~~G~Y~I~V~~~~~~i 372 (974)
..+|+|.|......+|.|.++|.+.+...
T Consensus 19 ~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~ 47 (77)
T PF00017_consen 19 KPDGTFLVRPSSSKPGKYVLSVRFDGKVK 47 (77)
T ss_dssp SSTTEEEEEEESSSTTSEEEEEEETTEEE
T ss_pred CCCCeEEEEeccccccccccccccccccE
Confidence 56899999999999999999999999543
No 80
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.02 E-value=1.1e+03 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.6
Q ss_pred EEEEeCCCcccccCCCeEEEEE
Q 002057 252 LTISDEKHNKSVSNMPYTYTVF 273 (974)
Q Consensus 252 v~V~~~~~~~~I~gSPf~~~V~ 273 (974)
+.|+|+...-+|+|-||.++|.
T Consensus 54 vdvlYD~~~y~isg~~etV~Vt 75 (403)
T COG4856 54 VDVLYDSDKYFISGQPETVTVT 75 (403)
T ss_pred eEEEEccccccccCCceEEEEE
Confidence 4677777777899999999998
No 81
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=25.28 E-value=30 Score=43.29 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=25.3
Q ss_pred hhhCceeeeeehhhhhHHHHHHH-HHHHHhHhhhccccccCcccccccccccccCCCCC
Q 002057 886 HTLGAGVVIEFFMVFFLGVLLLF-FTCKCAFLLVNERRSRGNSERSTAQIYQKQTPQEK 943 (974)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (974)
-|||..++| +++|=|+||| |-|||- ..|++++|.+.+.+-...|+.|.|+
T Consensus 277 ~ILG~~~li----vl~lL~vLl~yCrrkc~----~~r~~~~~~~l~~~l~~~KkDQ~TS 327 (807)
T PF10577_consen 277 AILGGTALI----VLILLCVLLCYCRRKCL----KPRQRHRKLTLSSALDVSKKDQTTS 327 (807)
T ss_pred HHHHHHHHH----HHHHHHHHHHhhhcccC----Ccccccccccccccccccccccccc
Confidence 455555444 5555555543 334442 2333445666665555566666553
No 82
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.08 E-value=58 Score=31.86 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHhHhhhccccccC
Q 002057 899 VFFLGVLLLFFTCKCAFLLVNERRSRG 925 (974)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (974)
+|++.+|+++|++-..+.+.++||+|+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777777777766666667777663
No 83
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=24.56 E-value=1.1e+02 Score=26.42 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=24.6
Q ss_pred CCCceEEEEEEecCCeeEEEEEEECC
Q 002057 126 NEVGYIIIEFILMKAGNFSLHVEAGN 151 (974)
Q Consensus 126 n~dGt~~v~Y~P~~~G~Y~V~V~~~~ 151 (974)
..+|+|.|......+|.|.++|+..+
T Consensus 19 ~~~G~FLvR~s~~~~~~~~Lsv~~~~ 44 (77)
T PF00017_consen 19 KPDGTFLVRPSSSKPGKYVLSVRFDG 44 (77)
T ss_dssp SSTTEEEEEEESSSTTSEEEEEEETT
T ss_pred CCCCeEEEEecccccccccccccccc
Confidence 57999999999999999999999988
No 84
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=24.53 E-value=3.7e+02 Score=36.04 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=38.1
Q ss_pred eeCCCceEEEEEEecCCeeEEEEEEECCeecCCCCeeEEecCCCCCCcceEEeccccceeEEeeeeeEEEE
Q 002057 124 GLNEVGYIIIEFILMKAGNFSLHVEAGNQTLNGSPLPFKVNPGPVDVSNCVAKWKYEVAAWQIFSKMEIFI 194 (974)
Q Consensus 124 ~~n~dGt~~v~Y~P~~~G~Y~V~V~~~~~~I~gSPf~v~V~pg~~d~s~~~~~g~~~~~~~~~g~~~~f~i 194 (974)
.+..+.-|.++++|..+|.|.+.+..++.+|+---| .|.+ +|+ ...+.|+.-...-.+|..+++.+
T Consensus 1082 ~~~~~~~~~l~~tp~~aGi~~vv~~~~~~~v~~GS~--~i~~--Pd~-~i~v~~Pa~~D~T~aGtd~~I~~ 1147 (1289)
T PF06016_consen 1082 YDPANNEWTLTWTPSTAGILDVVVDDGPVPVPLGSF--TIEP--PDP-TITVTWPANLDYTDAGTDVNITC 1147 (1289)
T ss_dssp EETTTTEEEEEEE-SS-CEEEEEECTTTCCEEEEEE--EEB--------EEEE--TT--SSTT-EEEEEEE
T ss_pred EeccCceEEEEEccCCCceEEEEeccCCccccccee--EeeC--CCC-ceEEecccceeeeccCceeeEEe
Confidence 356788999999999999999977778877764333 4433 354 45666774433345566666655
No 85
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=24.53 E-value=3.2e+02 Score=28.81 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=42.7
Q ss_pred EEeeeeeEEEEeeccccCCCCCceeeeEEEEEecCCCeeecccceeeEEeCCceE-EEEEeeCCceeEEEEEEeCCCccc
Q 002057 184 WQIFSKMEIFIHQLDQYGNLVPGFYAFDADVVEKETNLSIPVADLQFEEVAPGVQ-LFSYTIEESGNFLLTISDEKHNKS 262 (974)
Q Consensus 184 ~~~g~~~~f~i~~~da~gn~v~g~~~f~v~v~~~~~~~s~p~~~~~~~~~~dG~~-~vsf~P~~~G~y~v~V~~~~~~~~ 262 (974)
..+|++..|.+...|. ++.| .+|...++. +..+|.. .+.|+|.++|.|...-..=++- .
T Consensus 121 vp~g~~v~~~~ts~DV-------~Hsf-----------~ip~~~~k~-da~PG~~~~~~~~~~~~G~y~~~c~e~cG~-~ 180 (201)
T TIGR02866 121 VPAGTPVRLQVTSKDV-------IHSF-----------WVPELGGKI-DAIPGQYNALWFNADEPGVYYGYCAELCGA-G 180 (201)
T ss_pred EEcCCEEEEEEEeCch-------hhcc-----------cccccCceE-EecCCcEEEEEEEeCCCEEEEEEehhhCCc-C
Confidence 4567788888877663 2222 223111222 2334544 5789999999999986421211 2
Q ss_pred ccCCCeEEEEEc
Q 002057 263 VSNMPYTYTVFV 274 (974)
Q Consensus 263 I~gSPf~~~V~~ 274 (974)
=..+++++.|.+
T Consensus 181 h~~M~~~v~v~~ 192 (201)
T TIGR02866 181 HSLMLFKVVVVE 192 (201)
T ss_pred ccCCeEEEEEEC
Confidence 388999988863
No 86
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=23.77 E-value=2e+02 Score=26.56 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=14.0
Q ss_pred CeEEEEEecCCCeeEEEEEEE
Q 002057 347 SAFDVTYTPEKSGIYKILVLC 367 (974)
Q Consensus 347 G~y~VsYtP~~~G~Y~I~V~~ 367 (974)
.+..++++|.++|+|.+...+
T Consensus 74 ~~~~~~f~~~~~G~y~~~C~~ 94 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEFYCTM 94 (104)
T ss_dssp -EEEEEEEE-S-EEEEEB-SS
T ss_pred CEEEEEEcCCCCEEEEEEcCC
Confidence 457899999999999876543
No 87
>PF15050 SCIMP: SCIMP protein
Probab=23.63 E-value=43 Score=32.14 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHH
Q 002057 900 FFLGVLLLFFTCKC 913 (974)
Q Consensus 900 ~~~~~~~~~~~~~~ 913 (974)
+.||+ +|||.|+|
T Consensus 21 ~~lgl-IlyCvcR~ 33 (133)
T PF15050_consen 21 VVLGL-ILYCVCRW 33 (133)
T ss_pred HHHHH-HHHHHHHH
Confidence 34444 46777765
No 88
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=23.15 E-value=3.2e+02 Score=22.90 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.0
Q ss_pred eEEEecCCCCeeeeEEEEEEEcCCCCce
Q 002057 673 SIQYLGNENFYGEDTIRVSARNKNGKND 700 (974)
Q Consensus 673 ~~~YtP~~~f~G~dsftytV~D~~g~~t 700 (974)
.....|..+..|.-++++++.|..|...
T Consensus 12 ~~~~~P~~~~dg~yt~~v~a~D~AGN~~ 39 (60)
T PF12245_consen 12 WSTVIPENDADGEYTLTVTATDKAGNTS 39 (60)
T ss_pred eeccccCccCCccEEEEEEEEECCCCEE
Confidence 3345688888999999999999999853
No 89
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.79 E-value=58 Score=29.60 Aligned_cols=12 Identities=33% Similarity=1.079 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHH
Q 002057 900 FFLGVLLLFFTC 911 (974)
Q Consensus 900 ~~~~~~~~~~~~ 911 (974)
+++=++||||.|
T Consensus 43 iFil~VilwfvC 54 (94)
T PF05393_consen 43 IFILLVILWFVC 54 (94)
T ss_pred HHHHHHHHHHHH
Confidence 456678899999
No 90
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=21.95 E-value=2e+02 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.4
Q ss_pred CcEEEEcCCCC-CeeeeEEEEEEEcCCC
Q 002057 539 GRIFRYTPFKD-YIGNDSFSYTIADVNG 565 (974)
Q Consensus 539 ~g~~tYtP~~~-f~G~DsFtYtV~D~~G 565 (974)
.|.|+-+|... -.|..+|+-++.|+.|
T Consensus 22 tG~isGtp~~~~~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 22 TGTISGTPTSSVQPGTYTFTVTATDGSG 49 (49)
T ss_pred CCEEEeecCCCccccEEEEEEEEEcCCC
Confidence 58888889876 4489999999999875
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.54 E-value=50 Score=32.19 Aligned_cols=13 Identities=31% Similarity=0.669 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHH
Q 002057 899 VFFLGVLLLFFTC 911 (974)
Q Consensus 899 ~~~~~~~~~~~~~ 911 (974)
..-+|.+||.+.|
T Consensus 75 aGvIg~Illi~y~ 87 (122)
T PF01102_consen 75 AGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445666655555
No 92
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=21.47 E-value=83 Score=27.39 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhHhhhccccccCccccccccccc
Q 002057 901 FLGVLLLFFTCKCAFLLVNERRSRGNSERSTAQIYQ 936 (974)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (974)
+|=.+.|.++|-|....--+|-.|.....+..|..|
T Consensus 5 lll~vvll~~clC~lsrRvkrLErs~~~~~~eQE~h 40 (74)
T PF05083_consen 5 LLLAVVLLSACLCRLSRRVKRLERSWEQLSSEQELH 40 (74)
T ss_pred hhHHHHHHHHHHHHHHhhhhhcccchhccccccchH
Confidence 444555667888887655555555555555455444
No 93
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=20.19 E-value=70 Score=38.53 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=28.4
Q ss_pred eeEEeCCceEEEEEeeCCceeEEEEEEeCCCcccc
Q 002057 229 QFEEVAPGVQLFSYTIEESGNFLLTISDEKHNKSV 263 (974)
Q Consensus 229 ~~~~~~dG~~~vsf~P~~~G~y~v~V~~~~~~~~I 263 (974)
......+|+|.|+|.+.++++|.|+|+|+-+=+||
T Consensus 700 ~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHi 734 (865)
T KOG2996|consen 700 TLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHI 734 (865)
T ss_pred HhhcCCCceEEEEecccchhheeEEEEeccccceE
Confidence 35666799999999999999999999976543333
No 94
>PRK10301 hypothetical protein; Provisional
Probab=20.07 E-value=1.8e+02 Score=28.39 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=15.2
Q ss_pred ecCCeeEEEEEE---ECCeecCCC
Q 002057 137 LMKAGNFSLHVE---AGNQTLNGS 157 (974)
Q Consensus 137 P~~~G~Y~V~V~---~~~~~I~gS 157 (974)
+..+|.|.|+-+ -+|+++.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~ 118 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGH 118 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCe
Confidence 357999998743 377777776
Done!