BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002059
(973 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 53 EAKVEHCRATRDLRSC-GRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIR 110
EA++ + R + C R V V CGH +CAEC CPICR PV R+ +R
Sbjct: 4 EAQLRRLQEERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPV---RSRVR 58
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 30 YNSRAVQEALEHLASIDLCELRYEAKVEHCRATRDLRSC-GRYVQYVLNSCGHASLCAEC 88
Y + V + ++++ + D+ L E ++ + R + C + V V CGH +C EC
Sbjct: 263 YKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQEC 322
Query: 89 RQRCDFCPICR 99
CPICR
Sbjct: 323 APSLRKCPICR 333
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 6/161 (3%)
Query: 37 EALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCP 96
+ALE LA L A+ +A LR R VL G +L E + F P
Sbjct: 15 KALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAP 74
Query: 97 ICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDF---EDAENQITADVQRLYSLFD 153
R+ VP R Y+ +EAGL+ +R + Y D ED + A + ++S
Sbjct: 75 GERVLVPVY-GKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETS 133
Query: 154 TALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVK 194
T +L +L + E V +D V + L+ EV ++
Sbjct: 134 TGALADLPALARAFKEK--NPEGLVGADMVTSLLVGEVALE 172
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 49 ELRYEAKVEHCRATRDLRSC-GRYVQYVLNSCGHASLCAECRQRCDFCPIC 98
E+ E ++ + + + C R + V CGH C +C + D CP+C
Sbjct: 11 EISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 49 ELRYEAKVEHCRATRDLRSC-GRYVQYVLNSCGHASLCAECRQRCDFCPIC 98
E+ E ++ + + + C R + V CGH C +C + D CP+C
Sbjct: 11 EISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 49 ELRYEAKVEHCRATRDLRSC-GRYVQYVLNSCGHASLCAECRQRCDFCPIC 98
E+ E ++ + + + C R + V CGH C +C + D CP+C
Sbjct: 12 EISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 62
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 36 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 95
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 96 LQNNHTLFTDL 106
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 44 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 103
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 104 LQNNHTLFTDL 114
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 44 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 103
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 104 LQNNHTLFTDL 114
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 37 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 96
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 97 LQNNHTLFTDL 107
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 35 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 94
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 95 LQNNHTLFTDL 105
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 48 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 107
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 108 LQNNHTLFTDL 118
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 36 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 95
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 96 LQNNHTLFTDL 106
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 40 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 99
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 100 LQNNHTLFTDL 110
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 30 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 89
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 90 LQNNHTLFTDL 100
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 36 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 95
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 96 LQNNHTLFTDL 106
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 36 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 95
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 96 LQNNHTLFTDL 106
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 30 PFENMWPGIFVYMVHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 89
Query: 437 TR--HSLLESL 445
+ H+L L
Sbjct: 90 LQNNHTLFTDL 100
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 67 PFENMWPGIFVYMIHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 126
Query: 437 TRHS 440
+++
Sbjct: 127 LQNN 130
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 63 PFENMWPGIFVYMIHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 122
Query: 437 TRHS 440
+++
Sbjct: 123 LQNN 126
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 49 PFENMWPGIFVYMIHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 108
Query: 437 TRHS 440
+++
Sbjct: 109 LQNN 112
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 380 PFENLRAAVDILFLH---GSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSI 436
PFEN+ + + +H G+S L K F+ + + +P NW+H V ++I
Sbjct: 19 PFENMWPGIFVYMIHRSCGTSCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAI 78
Query: 437 TRHS 440
+++
Sbjct: 79 LQNN 82
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 25/184 (13%)
Query: 782 STYDFGVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSRTLSNSHRRDKVSDKISPVPE 841
S DF ++ VDG + P++ TP KG N SS LSN ++IS P+
Sbjct: 405 SAIDFSYNEIGSVDGKNF------DPLDPTPFKGINVSSINLSN--------NQISKFPK 450
Query: 842 QNGFLSQHLNTIHHYSHRMTTNPA-STPVSNRGLHNDL---AGDLHSNLSSKRVHSDRED 897
+ L++I+ + +T P S N N + DL N +K R
Sbjct: 451 ELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 898 GLRYMISSEDPMDVSLSNGKKGFAVE--DRQAIAGGGLRWRSDETSDEEEKQSPESAMGV 955
L Y++ +D+S ++ K F + + + G G+R + D + ++ PE
Sbjct: 511 TLPYLVG----IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565
Query: 956 ASYT 959
S T
Sbjct: 566 PSLT 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,064,845
Number of Sequences: 62578
Number of extensions: 1127656
Number of successful extensions: 2379
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2369
Number of HSP's gapped (non-prelim): 29
length of query: 973
length of database: 14,973,337
effective HSP length: 108
effective length of query: 865
effective length of database: 8,214,913
effective search space: 7105899745
effective search space used: 7105899745
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)