Query 002059
Match_columns 973
No_of_seqs 124 out of 137
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 98.1 5.8E-07 2E-11 77.3 1.5 35 70-104 24-58 (68)
2 2yho_A E3 ubiquitin-protein li 98.0 1.7E-06 5.7E-11 76.4 1.6 36 70-105 27-62 (79)
3 2vje_B MDM4 protein; proto-onc 97.9 1.4E-06 4.7E-11 73.6 -0.3 35 70-104 16-56 (63)
4 4ic3_A E3 ubiquitin-protein li 97.9 3.3E-06 1.1E-10 73.2 1.5 36 70-105 33-68 (74)
5 2ecg_A Baculoviral IAP repeat- 97.8 5.6E-06 1.9E-10 71.6 2.0 35 70-104 34-68 (75)
6 2vje_A E3 ubiquitin-protein li 97.7 3.9E-06 1.3E-10 71.1 -0.8 35 70-104 17-57 (64)
7 3t6p_A Baculoviral IAP repeat- 97.3 6.8E-05 2.3E-09 82.9 2.0 36 70-105 304-339 (345)
8 4ayc_A E3 ubiquitin-protein li 96.5 0.00065 2.2E-08 65.0 1.3 35 70-105 62-100 (138)
9 2d8t_A Dactylidin, ring finger 96.1 0.0015 5.1E-08 55.4 1.0 33 72-105 26-62 (71)
10 2ysl_A Tripartite motif-contai 96.0 0.0021 7.1E-08 54.2 1.7 33 73-106 32-71 (73)
11 1g25_A CDK-activating kinase a 95.9 0.0022 7.6E-08 53.3 1.6 31 75-106 22-57 (65)
12 2y1n_A E3 ubiquitin-protein li 95.9 0.0018 6E-08 72.9 1.2 35 71-106 342-381 (389)
13 2ea6_A Ring finger protein 4; 95.8 0.0026 8.8E-08 52.8 1.5 29 75-104 36-68 (69)
14 2ecn_A Ring finger protein 141 95.8 0.0018 6E-08 54.5 0.4 32 75-107 28-63 (70)
15 2ct2_A Tripartite motif protei 95.6 0.0035 1.2E-07 54.4 1.7 32 74-106 32-70 (88)
16 2ecm_A Ring finger and CHY zin 95.4 0.0034 1.1E-07 50.1 0.7 29 74-103 22-54 (55)
17 3fl2_A E3 ubiquitin-protein li 95.2 0.008 2.7E-07 56.2 2.5 36 71-107 62-102 (124)
18 2xeu_A Ring finger protein 4; 95.1 0.0058 2E-07 49.9 1.2 31 74-105 23-57 (64)
19 2egp_A Tripartite motif-contai 95.0 0.0094 3.2E-07 50.8 2.1 33 72-105 23-66 (79)
20 1chc_A Equine herpes virus-1 r 94.9 0.0044 1.5E-07 51.6 0.0 30 74-104 19-52 (68)
21 2kiz_A E3 ubiquitin-protein li 94.9 0.0072 2.5E-07 50.6 1.3 32 73-105 29-64 (69)
22 1e4u_A Transcriptional repress 94.9 0.0096 3.3E-07 52.5 2.0 32 73-105 25-63 (78)
23 2ecy_A TNF receptor-associated 94.7 0.0089 3E-07 49.8 1.4 33 72-105 26-63 (66)
24 2csy_A Zinc finger protein 183 94.7 0.0064 2.2E-07 52.7 0.4 31 72-103 26-60 (81)
25 1jm7_A BRCA1, breast cancer ty 94.6 0.009 3.1E-07 54.2 1.3 33 72-105 32-71 (112)
26 3ng2_A RNF4, snurf, ring finge 94.6 0.0093 3.2E-07 49.9 1.2 31 75-106 31-65 (71)
27 1x4j_A Ring finger protein 38; 94.5 0.009 3.1E-07 51.0 1.0 32 73-105 38-73 (75)
28 1z6u_A NP95-like ring finger p 94.5 0.014 4.9E-07 57.0 2.5 36 70-106 87-127 (150)
29 2ecw_A Tripartite motif-contai 94.4 0.015 5.1E-07 49.8 2.0 33 72-105 30-72 (85)
30 1bor_A Transcription factor PM 94.3 0.016 5.3E-07 47.4 1.8 36 71-107 16-52 (56)
31 2ect_A Ring finger protein 126 94.2 0.011 3.7E-07 50.6 0.8 33 73-106 30-66 (78)
32 2ep4_A Ring finger protein 24; 94.2 0.013 4.4E-07 49.7 1.1 31 74-105 31-65 (74)
33 2djb_A Polycomb group ring fin 94.0 0.017 5.8E-07 49.0 1.6 33 73-106 27-64 (72)
34 2ecv_A Tripartite motif-contai 94.0 0.019 6.5E-07 49.1 1.9 32 73-105 31-72 (85)
35 3ztg_A E3 ubiquitin-protein li 93.6 0.032 1.1E-06 49.1 2.7 35 71-106 23-64 (92)
36 3l11_A E3 ubiquitin-protein li 93.4 0.023 8E-07 52.2 1.5 33 71-104 25-62 (115)
37 1v87_A Deltex protein 2; ring- 93.4 0.019 6.5E-07 52.5 0.9 30 74-104 56-94 (114)
38 2yur_A Retinoblastoma-binding 93.4 0.025 8.7E-07 48.3 1.6 37 71-108 25-68 (74)
39 2l0b_A E3 ubiquitin-protein li 93.3 0.021 7.3E-07 50.8 1.0 30 74-104 56-89 (91)
40 2ckl_B Ubiquitin ligase protei 93.3 0.037 1.3E-06 54.1 2.7 34 73-107 66-105 (165)
41 3lrq_A E3 ubiquitin-protein li 92.9 0.043 1.5E-06 49.7 2.4 32 73-105 34-71 (100)
42 1jm7_B BARD1, BRCA1-associated 92.9 0.045 1.5E-06 50.7 2.6 34 71-105 32-68 (117)
43 2ckl_A Polycomb group ring fin 92.7 0.035 1.2E-06 50.6 1.5 33 72-105 26-63 (108)
44 2y43_A E3 ubiquitin-protein li 91.6 0.069 2.4E-06 47.8 2.1 33 72-105 33-70 (99)
45 3vk6_A E3 ubiquitin-protein li 91.3 0.061 2.1E-06 50.3 1.4 32 75-107 16-52 (101)
46 3hct_A TNF receptor-associated 91.2 0.094 3.2E-06 48.7 2.6 32 73-105 30-66 (118)
47 1iym_A EL5; ring-H2 finger, ub 90.8 0.084 2.9E-06 42.0 1.6 29 74-103 21-54 (55)
48 4ap4_A E3 ubiquitin ligase RNF 90.7 0.071 2.4E-06 49.1 1.2 32 75-107 28-63 (133)
49 1rmd_A RAG1; V(D)J recombinati 89.4 0.17 6E-06 46.4 2.7 34 72-106 34-72 (116)
50 2ecj_A Tripartite motif-contai 89.3 0.11 3.8E-06 41.5 1.2 26 72-98 26-58 (58)
51 2c2l_A CHIP, carboxy terminus 88.2 0.12 4.1E-06 53.3 0.9 37 68-105 214-256 (281)
52 4ap4_A E3 ubiquitin ligase RNF 87.9 0.16 5.5E-06 46.7 1.4 30 75-105 93-126 (133)
53 3knv_A TNF receptor-associated 87.1 0.084 2.9E-06 51.1 -1.0 31 72-103 42-77 (141)
54 2ecl_A Ring-box protein 2; RNF 86.9 0.19 6.4E-06 43.9 1.2 31 73-104 42-76 (81)
55 2ysj_A Tripartite motif-contai 86.4 0.17 5.8E-06 41.5 0.6 26 72-98 31-63 (63)
56 3mkq_A Coatomer beta'-subunit; 86.3 4.3 0.00015 46.6 12.3 159 434-641 597-764 (814)
57 1t1h_A Gspef-atpub14, armadill 85.9 0.26 9E-06 41.9 1.6 33 72-105 19-56 (78)
58 2kre_A Ubiquitin conjugation f 84.3 0.31 1.1E-05 44.6 1.3 33 71-104 39-75 (100)
59 2kr4_A Ubiquitin conjugation f 84.0 0.47 1.6E-05 41.9 2.4 34 71-105 24-61 (85)
60 3dpl_R Ring-box protein 1; ubi 83.1 0.35 1.2E-05 45.0 1.2 33 73-106 67-105 (106)
61 3hcs_A TNF receptor-associated 83.0 0.36 1.2E-05 47.3 1.2 32 73-105 30-66 (170)
62 4a0k_B E3 ubiquitin-protein li 80.6 0.33 1.1E-05 46.2 0.0 37 69-106 74-116 (117)
63 2f42_A STIP1 homology and U-bo 78.4 0.87 3E-05 46.2 2.3 33 72-105 117-154 (179)
64 3mkr_A Coatomer subunit epsilo 73.9 33 0.0011 35.4 12.8 90 441-534 103-192 (291)
65 1wgm_A Ubiquitin conjugation f 71.8 1.8 6.3E-05 39.4 2.4 35 71-105 32-70 (98)
66 3mkr_A Coatomer subunit epsilo 68.1 74 0.0025 32.7 13.9 56 472-535 102-157 (291)
67 3i5p_A Nucleoporin NUP170; hel 54.0 16 0.00056 42.6 6.5 64 570-640 181-244 (525)
68 2yu4_A E3 SUMO-protein ligase 53.5 3.7 0.00013 36.7 0.8 32 72-104 18-63 (94)
69 4abn_A Tetratricopeptide repea 53.5 2.6E+02 0.0089 30.8 15.8 191 458-688 126-329 (474)
70 4fhn_B Nucleoporin NUP120; pro 51.6 15 0.00052 46.0 6.1 169 442-641 845-1049(1139)
71 2ko5_A Ring finger protein Z; 46.8 5.1 0.00017 37.3 0.6 32 74-105 39-74 (99)
72 3htk_C E3 SUMO-protein ligase 45.9 4.8 0.00016 43.4 0.4 36 70-106 190-234 (267)
73 2d8s_A Cellular modulator of i 45.3 6.1 0.00021 34.8 0.9 30 74-104 30-70 (80)
74 2xpi_A Anaphase-promoting comp 42.0 2.3E+02 0.0079 30.9 12.9 134 474-640 444-577 (597)
75 3ieg_A DNAJ homolog subfamily 38.4 1.6E+02 0.0054 29.1 10.1 56 474-533 40-96 (359)
76 3as5_A MAMA; tetratricopeptide 38.3 2E+02 0.007 25.1 10.2 85 444-534 13-102 (186)
77 1wim_A KIAA0161 protein; ring 36.9 8.9 0.00031 33.8 0.6 28 77-105 24-67 (94)
78 2ho1_A Type 4 fimbrial biogene 34.9 1.6E+02 0.0055 28.0 9.2 121 405-534 37-167 (252)
79 2vq2_A PILW, putative fimbrial 34.1 2.6E+02 0.0088 25.5 10.2 20 620-639 154-173 (225)
80 2q7f_A YRRB protein; TPR, prot 33.3 1.9E+02 0.0065 27.0 9.3 59 472-534 92-151 (243)
81 2y4t_A DNAJ homolog subfamily 33.1 3.5E+02 0.012 28.1 12.1 59 473-534 179-237 (450)
82 3hym_B Cell division cycle pro 32.1 3.7E+02 0.013 26.2 14.5 150 458-640 148-297 (330)
83 2xpi_A Anaphase-promoting comp 31.3 5.4E+02 0.018 27.9 14.1 59 472-533 340-398 (597)
84 2pl2_A Hypothetical conserved 30.4 3E+02 0.01 26.4 10.4 85 443-534 9-110 (217)
85 1w3b_A UDP-N-acetylglucosamine 28.9 4.6E+02 0.016 26.8 12.1 71 459-534 227-297 (388)
86 3qou_A Protein YBBN; thioredox 26.5 3.7E+02 0.013 27.1 10.8 125 475-640 121-246 (287)
87 2gw1_A Mitochondrial precursor 26.3 5.8E+02 0.02 26.7 12.5 81 444-534 242-330 (514)
88 1xnf_A Lipoprotein NLPI; TPR, 25.5 1.4E+02 0.0049 28.5 7.0 171 423-639 59-241 (275)
89 2y4t_A DNAJ homolog subfamily 25.4 3.2E+02 0.011 28.4 10.2 55 583-640 184-238 (450)
90 2ho1_A Type 4 fimbrial biogene 25.4 4.3E+02 0.015 24.9 13.5 55 476-534 76-131 (252)
91 3hym_B Cell division cycle pro 24.5 5E+02 0.017 25.3 11.2 130 471-641 90-221 (330)
92 3fp2_A TPR repeat-containing p 24.4 6.6E+02 0.022 26.6 12.7 127 474-641 279-406 (537)
93 1xi4_A Clathrin heavy chain; a 21.7 2.4E+02 0.0081 37.4 9.6 69 458-534 1092-1160(1630)
94 3ieg_A DNAJ homolog subfamily 21.6 5.8E+02 0.02 25.0 14.8 83 446-534 127-214 (359)
95 2q7f_A YRRB protein; TPR, prot 21.6 2.6E+02 0.0089 26.0 7.9 58 473-534 59-117 (243)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=5.8e-07 Score=77.31 Aligned_cols=35 Identities=37% Similarity=0.808 Sum_probs=32.8
Q ss_pred ccchhhcccCCchhhhhHhhhhccCCCcccccccC
Q 002059 70 RYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPK 104 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~~~cpicr~~Ipk 104 (973)
+..++||+||||.++|..|+++.+.||+||.+|.+
T Consensus 24 ~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 24 GTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 46789999999999999999999999999999976
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.97 E-value=1.7e-06 Score=76.37 Aligned_cols=36 Identities=28% Similarity=0.744 Sum_probs=33.6
Q ss_pred ccchhhcccCCchhhhhHhhhhccCCCcccccccCC
Q 002059 70 RYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKK 105 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~~~cpicr~~Ipk~ 105 (973)
+..+.|++||||.+.|..|+.+...||+||.+|.+.
T Consensus 27 ~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 27 EEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62 (79)
T ss_dssp SBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEE
T ss_pred ccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCe
Confidence 568899999999999999999999999999999874
No 3
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.90 E-value=1.4e-06 Score=73.63 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=30.7
Q ss_pred ccchhhcc--cCCchhhhhHhhhhcc----CCCcccccccC
Q 002059 70 RYVQYVLN--SCGHASLCAECRQRCD----FCPICRIPVPK 104 (973)
Q Consensus 70 ~~~~~vl~--~c~h~~lc~~c~~~~~----~cpicr~~Ipk 104 (973)
+..+.|++ ||||.+.|.+|+.+.. .|||||.+|.+
T Consensus 16 ~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 16 RPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp SBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45667666 9999999999999999 99999999964
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.87 E-value=3.3e-06 Score=73.15 Aligned_cols=36 Identities=33% Similarity=0.814 Sum_probs=32.9
Q ss_pred ccchhhcccCCchhhhhHhhhhccCCCcccccccCC
Q 002059 70 RYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKK 105 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~~~cpicr~~Ipk~ 105 (973)
...+.|++||||.+.|..|..+...||+||.+|.+.
T Consensus 33 ~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 33 RNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 68 (74)
T ss_dssp SBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEE
T ss_pred CCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCc
Confidence 467889999999999999999999999999999763
No 5
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=5.6e-06 Score=71.63 Aligned_cols=35 Identities=31% Similarity=0.806 Sum_probs=32.4
Q ss_pred ccchhhcccCCchhhhhHhhhhccCCCcccccccC
Q 002059 70 RYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPK 104 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~~~cpicr~~Ipk 104 (973)
...+.|++||||.+.|..|.++...||+||.+|.+
T Consensus 34 ~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 34 RNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp SCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 35789999999999999999999999999999976
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.69 E-value=3.9e-06 Score=71.06 Aligned_cols=35 Identities=29% Similarity=0.677 Sum_probs=31.0
Q ss_pred ccchhhcc--cCCchhhhhHhhhhccC----CCcccccccC
Q 002059 70 RYVQYVLN--SCGHASLCAECRQRCDF----CPICRIPVPK 104 (973)
Q Consensus 70 ~~~~~vl~--~c~h~~lc~~c~~~~~~----cpicr~~Ipk 104 (973)
+..+.||+ ||||.+.|.+|+.+... ||+||.+|.+
T Consensus 17 ~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 17 RPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp SCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 56778887 99999999999999986 9999999964
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.28 E-value=6.8e-05 Score=82.89 Aligned_cols=36 Identities=36% Similarity=0.770 Sum_probs=32.8
Q ss_pred ccchhhcccCCchhhhhHhhhhccCCCcccccccCC
Q 002059 70 RYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKK 105 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~~~cpicr~~Ipk~ 105 (973)
...+.|++||||.|.|..|..++..||+||.+|.+.
T Consensus 304 ~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 304 KEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339 (345)
T ss_dssp SBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEE
T ss_pred cCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCe
Confidence 467889999999999999999999999999999753
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.50 E-value=0.00065 Score=65.03 Aligned_cols=35 Identities=34% Similarity=0.779 Sum_probs=29.5
Q ss_pred ccchhhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 70 RYVQYVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
...+.|++|||| ..|..|..++ ..||+||.+|...
T Consensus 62 ~~~~~~~~~CgH-~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 62 YFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp BCSSEEEETTSC-EEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCceECCCCC-CccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456789999999 6899998876 6799999999754
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.0015 Score=55.38 Aligned_cols=33 Identities=30% Similarity=0.745 Sum_probs=28.1
Q ss_pred chhhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
.+.|+++|||. .|..|.+++ ..||+||.+|.+.
T Consensus 26 ~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 26 VHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 45678899999 899998876 6799999999753
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.00 E-value=0.0021 Score=54.24 Aligned_cols=33 Identities=33% Similarity=0.844 Sum_probs=28.0
Q ss_pred hhhcccCCchhhhhHhhhhcc-------CCCcccccccCCc
Q 002059 73 QYVLNSCGHASLCAECRQRCD-------FCPICRIPVPKKR 106 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~~-------~cpicr~~Ipk~G 106 (973)
+.|+++|||. .|..|.++.- .||+||.+|.+..
T Consensus 32 ~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 32 KPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp SEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 5677799999 8999998876 6999999998753
No 11
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.95 E-value=0.0022 Score=53.32 Aligned_cols=31 Identities=39% Similarity=0.953 Sum_probs=26.6
Q ss_pred hcccCCchhhhhHhhhhc-----cCCCcccccccCCc
Q 002059 75 VLNSCGHASLCAECRQRC-----DFCPICRIPVPKKR 106 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~G 106 (973)
|+.+|||. .|..|.++. ..||+||.++.+..
T Consensus 22 ~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 22 MVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp EECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred ecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 67899996 699999888 57999999998754
No 12
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.94 E-value=0.0018 Score=72.88 Aligned_cols=35 Identities=26% Similarity=0.685 Sum_probs=29.7
Q ss_pred cchhhcccCCchhhhhHhhhhc-----cCCCcccccccCCc
Q 002059 71 YVQYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKKR 106 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~G 106 (973)
..+.|+.||||.. |..|..++ ..||+||.+|...-
T Consensus 342 ~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 342 DKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp BCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4678999999997 99999854 78999999998754
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.0026 Score=52.76 Aligned_cols=29 Identities=34% Similarity=0.997 Sum_probs=25.4
Q ss_pred hcccCCchhhhhHhhhhc----cCCCcccccccC
Q 002059 75 VLNSCGHASLCAECRQRC----DFCPICRIPVPK 104 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk 104 (973)
|+++||| ..|..|.+++ ..||+||.+|.+
T Consensus 36 ~~~~CgH-~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 36 VSTECGH-VFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp EECSSSC-EEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred EeCCCCC-hhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 7899999 6899999876 579999999875
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.79 E-value=0.0018 Score=54.48 Aligned_cols=32 Identities=28% Similarity=0.908 Sum_probs=27.9
Q ss_pred hcccCCchhhhhHhhhhc----cCCCcccccccCCcc
Q 002059 75 VLNSCGHASLCAECRQRC----DFCPICRIPVPKKRN 107 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~G~ 107 (973)
|+++|||. .|..|..++ ..||+||.+|.....
T Consensus 28 ~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 28 LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 88999999 899999876 679999999986554
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.64 E-value=0.0035 Score=54.44 Aligned_cols=32 Identities=28% Similarity=0.695 Sum_probs=27.4
Q ss_pred hhcccCCchhhhhHhhhhc-------cCCCcccccccCCc
Q 002059 74 YVLNSCGHASLCAECRQRC-------DFCPICRIPVPKKR 106 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~-------~~cpicr~~Ipk~G 106 (973)
.++++||| ..|..|.++. ..||+||.++....
T Consensus 32 ~~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 32 PKLLHCGH-TICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp EEECSSSC-EEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred eEECCCCC-hhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 57889999 5699999887 78999999988764
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.43 E-value=0.0034 Score=50.12 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=25.5
Q ss_pred hhcccCCchhhhhHhhhhc----cCCCccccccc
Q 002059 74 YVLNSCGHASLCAECRQRC----DFCPICRIPVP 103 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ip 103 (973)
+++++||| ..|..|.++. ..||+||.+|+
T Consensus 22 ~~~~~CgH-~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGH-LLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSC-EEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred eEecCCCC-cccHHHHHHHHHcCCcCCCCCCcCC
Confidence 68899999 6899998876 78999999986
No 17
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.18 E-value=0.008 Score=56.17 Aligned_cols=36 Identities=25% Similarity=0.669 Sum_probs=28.9
Q ss_pred cchhhcccCCchhhhhHhhhhcc-----CCCcccccccCCcc
Q 002059 71 YVQYVLNSCGHASLCAECRQRCD-----FCPICRIPVPKKRN 107 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~~-----~cpicr~~Ipk~G~ 107 (973)
..+.|.++|||. .|..|..++- .||+||.++.....
T Consensus 62 ~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 102 (124)
T 3fl2_A 62 VFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGRSYA 102 (124)
T ss_dssp CSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTTCC
T ss_pred HcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCCCCC
Confidence 346778899996 6999987653 89999999987544
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=95.11 E-value=0.0058 Score=49.86 Aligned_cols=31 Identities=35% Similarity=0.971 Sum_probs=26.4
Q ss_pred hhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 74 YVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
+++.+|||. .|..|.++. ..||+||.++.+.
T Consensus 23 ~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 23 IVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp EEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred EEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 378999998 799998765 4799999999875
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.95 E-value=0.0094 Score=50.83 Aligned_cols=33 Identities=30% Similarity=0.729 Sum_probs=27.1
Q ss_pred chhhcccCCchhhhhHhhhh-----------ccCCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQR-----------CDFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~-----------~~~cpicr~~Ipk~ 105 (973)
.+.|.++|||. .|..|.++ -..||+||.++...
T Consensus 23 ~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 23 TEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp SSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 35677899995 79999986 46899999999864
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.94 E-value=0.0044 Score=51.62 Aligned_cols=30 Identities=37% Similarity=0.894 Sum_probs=25.5
Q ss_pred hhcccCCchhhhhHhhhhc----cCCCcccccccC
Q 002059 74 YVLNSCGHASLCAECRQRC----DFCPICRIPVPK 104 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk 104 (973)
+++++|||. .|..|..++ ..||+||.++..
T Consensus 19 ~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 19 SMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp EEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred cEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHh
Confidence 488999999 899998654 679999999974
No 21
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.91 E-value=0.0072 Score=50.55 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=26.5
Q ss_pred hhhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 73 QYVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
.++.++|||. .|..|.+++ ..||+||.+|...
T Consensus 29 ~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 29 DVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4677899998 799998765 6799999998753
No 22
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=94.88 E-value=0.0096 Score=52.48 Aligned_cols=32 Identities=34% Similarity=0.910 Sum_probs=26.4
Q ss_pred hhhccc--CCchhhhhHhhhhcc-----CCCcccccccCC
Q 002059 73 QYVLNS--CGHASLCAECRQRCD-----FCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl~~--c~h~~lc~~c~~~~~-----~cpicr~~Ipk~ 105 (973)
+.++.| |||. .|..|..+.. .||+||.++.+.
T Consensus 25 d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 25 DINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp TTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456666 9995 8999998874 899999999874
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.75 E-value=0.0089 Score=49.79 Aligned_cols=33 Identities=24% Similarity=0.624 Sum_probs=27.2
Q ss_pred chhhcccCCchhhhhHhhhhc-----cCCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~ 105 (973)
.+.|..+|||. .|..|.++. ..||+||.+|.+.
T Consensus 26 ~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 26 CSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45677899998 699999866 3799999999864
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.70 E-value=0.0064 Score=52.66 Aligned_cols=31 Identities=29% Similarity=0.616 Sum_probs=26.0
Q ss_pred chhhcccCCchhhhhHhhhhc----cCCCccccccc
Q 002059 72 VQYVLNSCGHASLCAECRQRC----DFCPICRIPVP 103 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ip 103 (973)
.+.|+.+|||.. |..|..++ ..||+||.++.
T Consensus 26 ~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 26 QNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999975 99999776 45999999997
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.63 E-value=0.009 Score=54.23 Aligned_cols=33 Identities=27% Similarity=0.700 Sum_probs=26.9
Q ss_pred chhhcccCCchhhhhHhhhhcc-------CCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQRCD-------FCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~~-------~cpicr~~Ipk~ 105 (973)
.+.|.++|||. .|..|..++- .||+||.++...
T Consensus 32 ~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 32 KEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp SSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 45677899995 5999987763 699999999864
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=94.62 E-value=0.0093 Score=49.85 Aligned_cols=31 Identities=39% Similarity=1.029 Sum_probs=25.9
Q ss_pred hcccCCchhhhhHhhhhc----cCCCcccccccCCc
Q 002059 75 VLNSCGHASLCAECRQRC----DFCPICRIPVPKKR 106 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~G 106 (973)
++.+|||. .|..|.+++ ..||+||.++.+..
T Consensus 31 ~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 31 VSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp EECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred EeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 88999995 899998654 58999999998643
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.55 E-value=0.009 Score=50.98 Aligned_cols=32 Identities=28% Similarity=0.647 Sum_probs=26.4
Q ss_pred hhhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 73 QYVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
.++.++|||. .|..|.+++ ..||+||.+|...
T Consensus 38 ~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 38 LLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp EEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred eEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3577899996 899998765 5799999999865
No 28
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.53 E-value=0.014 Score=57.00 Aligned_cols=36 Identities=33% Similarity=0.635 Sum_probs=29.4
Q ss_pred ccchhhcccCCchhhhhHhhhhc-----cCCCcccccccCCc
Q 002059 70 RYVQYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKKR 106 (973)
Q Consensus 70 ~~~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~G 106 (973)
...+.|.++||| ..|..|.+++ ..||+||.++...-
T Consensus 87 ~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 87 LVYQPVTTECFH-NVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp BCSSEEECTTSC-EEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred hhcCCEEcCCCC-chhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 356778899999 4699998876 37999999998763
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.40 E-value=0.015 Score=49.80 Aligned_cols=33 Identities=33% Similarity=0.834 Sum_probs=27.4
Q ss_pred chhhcccCCchhhhhHhhhh----------ccCCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQR----------CDFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~----------~~~cpicr~~Ipk~ 105 (973)
.+.|+++|||. .|..|.++ -..||+||.++...
T Consensus 30 ~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 30 KEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp SSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34568899995 79999876 67899999999864
No 30
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.29 E-value=0.016 Score=47.40 Aligned_cols=36 Identities=33% Similarity=0.658 Sum_probs=27.8
Q ss_pred cchhhcccCCchhhhhHhhhhc-cCCCcccccccCCcc
Q 002059 71 YVQYVLNSCGHASLCAECRQRC-DFCPICRIPVPKKRN 107 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~-~~cpicr~~Ipk~G~ 107 (973)
..+.|+++|||. .|..|.++- ..||+||.++.....
T Consensus 16 ~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 16 AKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPLGAD 52 (56)
T ss_dssp CBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSCCSS
T ss_pred cCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeecCCc
Confidence 456788999995 699998764 479999999875433
No 31
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.20 E-value=0.011 Score=50.61 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=26.2
Q ss_pred hhhcccCCchhhhhHhhhhc----cCCCcccccccCCc
Q 002059 73 QYVLNSCGHASLCAECRQRC----DFCPICRIPVPKKR 106 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~G 106 (973)
.++.++|||. .|..|.+++ ..||+||.+|...-
T Consensus 30 ~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 30 SVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp CEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 3456799995 899998755 67999999998653
No 32
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.013 Score=49.68 Aligned_cols=31 Identities=29% Similarity=0.776 Sum_probs=25.0
Q ss_pred hhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 74 YVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
++.++|||. .|..|.+++ ..||+||.+|..-
T Consensus 31 ~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 31 LGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp EEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred EEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccc
Confidence 455699997 899998754 5799999998764
No 33
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.02 E-value=0.017 Score=48.97 Aligned_cols=33 Identities=30% Similarity=0.674 Sum_probs=25.7
Q ss_pred hhhc-ccCCchhhhhHhhhhc----cCCCcccccccCCc
Q 002059 73 QYVL-NSCGHASLCAECRQRC----DFCPICRIPVPKKR 106 (973)
Q Consensus 73 ~~vl-~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~G 106 (973)
+.|. .+|||.- |..|.+++ ..||+||.+|.+.-
T Consensus 27 ~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 27 DATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp SCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3444 4999964 99998665 58999999998754
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.01 E-value=0.019 Score=49.12 Aligned_cols=32 Identities=34% Similarity=0.841 Sum_probs=26.8
Q ss_pred hhhcccCCchhhhhHhhhh----------ccCCCcccccccCC
Q 002059 73 QYVLNSCGHASLCAECRQR----------CDFCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~----------~~~cpicr~~Ipk~ 105 (973)
+.|.++|||. .|..|.++ -..||+||.++...
T Consensus 31 ~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 31 QPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp SCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4577799996 79999877 57899999999874
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=93.65 E-value=0.032 Score=49.15 Aligned_cols=35 Identities=26% Similarity=0.647 Sum_probs=27.2
Q ss_pred cchhhccc-CCchhhhhHhhhhc------cCCCcccccccCCc
Q 002059 71 YVQYVLNS-CGHASLCAECRQRC------DFCPICRIPVPKKR 106 (973)
Q Consensus 71 ~~~~vl~~-c~h~~lc~~c~~~~------~~cpicr~~Ipk~G 106 (973)
..+-|.++ |||. .|..|.++. ..||+||.++....
T Consensus 23 ~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 64 (92)
T 3ztg_A 23 MTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVSPD 64 (92)
T ss_dssp CSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSCCTT
T ss_pred hcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCCCcc
Confidence 34667889 9996 699998776 48999999975443
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=93.45 E-value=0.023 Score=52.24 Aligned_cols=33 Identities=39% Similarity=0.789 Sum_probs=27.3
Q ss_pred cchhhcccCCchhhhhHhhhhcc-----CCCcccccccC
Q 002059 71 YVQYVLNSCGHASLCAECRQRCD-----FCPICRIPVPK 104 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~~-----~cpicr~~Ipk 104 (973)
..+-|.++|||. .|..|.+++- .||+||.++..
T Consensus 25 ~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 25 LVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345677899996 7999998764 79999999975
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=93.43 E-value=0.019 Score=52.54 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=24.6
Q ss_pred hhcccCCchhhhhHhhhhcc---------CCCcccccccC
Q 002059 74 YVLNSCGHASLCAECRQRCD---------FCPICRIPVPK 104 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~~---------~cpicr~~Ipk 104 (973)
+++.+||| ..|..|-.++- .||+||.++.+
T Consensus 56 ~~~~~C~H-~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 56 GRLTKCSH-AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp EEESSSCC-EECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred eecCCCCC-cccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34899999 68999987664 89999999864
No 38
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=93.43 E-value=0.025 Score=48.31 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=28.4
Q ss_pred cchhhccc-CCchhhhhHhhhhc------cCCCcccccccCCccc
Q 002059 71 YVQYVLNS-CGHASLCAECRQRC------DFCPICRIPVPKKRNS 108 (973)
Q Consensus 71 ~~~~vl~~-c~h~~lc~~c~~~~------~~cpicr~~Ipk~G~~ 108 (973)
..+.|.++ ||| ..|..|.+++ ..||+||.++.+....
T Consensus 25 ~~~p~~~~~CgH-~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 25 MTDAVVIPCCGN-SYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CTTCEECSSSCC-EECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred HhCCeEcCCCCC-HHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 34667788 999 4799998777 3799999987655443
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=93.32 E-value=0.021 Score=50.84 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=24.8
Q ss_pred hhcccCCchhhhhHhhhhc----cCCCcccccccC
Q 002059 74 YVLNSCGHASLCAECRQRC----DFCPICRIPVPK 104 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk 104 (973)
++.++||| ..|..|..++ ..||+||.+|+.
T Consensus 56 ~~~l~C~H-~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 56 ATELPCHH-YFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEEETTTE-EEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred EEecCCCC-hHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 56789999 5899998754 679999999875
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.26 E-value=0.037 Score=54.13 Aligned_cols=34 Identities=32% Similarity=0.744 Sum_probs=25.9
Q ss_pred hhhcc-cCCchhhhhHhhhhc-----cCCCcccccccCCcc
Q 002059 73 QYVLN-SCGHASLCAECRQRC-----DFCPICRIPVPKKRN 107 (973)
Q Consensus 73 ~~vl~-~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~G~ 107 (973)
+.|.. +|||. .|..|..++ ..||+||.+|.....
T Consensus 66 ~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 105 (165)
T 2ckl_B 66 NTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVSKRS 105 (165)
T ss_dssp SEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCSGGG
T ss_pred CcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCCccc
Confidence 44554 99995 599999775 469999999975443
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=92.92 E-value=0.043 Score=49.71 Aligned_cols=32 Identities=31% Similarity=0.753 Sum_probs=26.6
Q ss_pred hhhc-ccCCchhhhhHhhhhc-----cCCCcccccccCC
Q 002059 73 QYVL-NSCGHASLCAECRQRC-----DFCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl-~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~ 105 (973)
+.|. .+|||. .|..|-.++ ..||+||.++...
T Consensus 34 ~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 34 DARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp SEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4566 899997 599999876 6899999999764
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.91 E-value=0.045 Score=50.75 Aligned_cols=34 Identities=29% Similarity=0.749 Sum_probs=27.5
Q ss_pred cchhhcc-cCCchhhhhHhhhhc--cCCCcccccccCC
Q 002059 71 YVQYVLN-SCGHASLCAECRQRC--DFCPICRIPVPKK 105 (973)
Q Consensus 71 ~~~~vl~-~c~h~~lc~~c~~~~--~~cpicr~~Ipk~ 105 (973)
..+.|.+ +|||. .|..|.++. ..||+||.++...
T Consensus 32 ~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 32 LREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAWIQ 68 (117)
T ss_dssp CSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCSCS
T ss_pred hhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCccc
Confidence 3467777 99995 499999988 5799999998653
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=92.67 E-value=0.035 Score=50.59 Aligned_cols=33 Identities=33% Similarity=0.861 Sum_probs=27.2
Q ss_pred chhhcc-cCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 72 VQYVLN-SCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~-~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
.+.|.+ +|||. .|..|-.++ ..||+||.++...
T Consensus 26 ~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 26 IDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp SSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred hCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCcccccc
Confidence 355665 99996 599998877 7899999999876
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=91.62 E-value=0.069 Score=47.80 Aligned_cols=33 Identities=24% Similarity=0.686 Sum_probs=25.6
Q ss_pred chhhcc-cCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 72 VQYVLN-SCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~-~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
.+.|.. +|||. .|..|.+++ ..||+||.++...
T Consensus 33 ~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 33 NIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp SSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 345555 99995 699998665 4799999999874
No 45
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.32 E-value=0.061 Score=50.26 Aligned_cols=32 Identities=28% Similarity=0.722 Sum_probs=27.3
Q ss_pred hcccCCchhhhhHhhh-----hccCCCcccccccCCcc
Q 002059 75 VLNSCGHASLCAECRQ-----RCDFCPICRIPVPKKRN 107 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~-----~~~~cpicr~~Ipk~G~ 107 (973)
-++||+| +.|-.|+. +=+.||+|+.+|.+=..
T Consensus 16 RmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 16 RMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp EEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred eeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4789999 89999994 45789999999987665
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.18 E-value=0.094 Score=48.66 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=26.5
Q ss_pred hhhcccCCchhhhhHhhhhc-----cCCCcccccccCC
Q 002059 73 QYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~ 105 (973)
+-|..+|||. .|..|..++ ..||+||.++...
T Consensus 30 ~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 30 EAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp SEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4577899995 799998776 4899999999874
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=90.76 E-value=0.084 Score=41.98 Aligned_cols=29 Identities=38% Similarity=0.859 Sum_probs=22.9
Q ss_pred hhccc-CCchhhhhHhhhh----ccCCCccccccc
Q 002059 74 YVLNS-CGHASLCAECRQR----CDFCPICRIPVP 103 (973)
Q Consensus 74 ~vl~~-c~h~~lc~~c~~~----~~~cpicr~~Ip 103 (973)
.+.++ |||. .|..|.++ -..||+||.+|+
T Consensus 21 ~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 21 ARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred eEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45565 9996 89999875 467999999875
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.65 E-value=0.071 Score=49.10 Aligned_cols=32 Identities=38% Similarity=0.971 Sum_probs=27.0
Q ss_pred hcccCCchhhhhHhhhhc----cCCCcccccccCCcc
Q 002059 75 VLNSCGHASLCAECRQRC----DFCPICRIPVPKKRN 107 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~G~ 107 (973)
|..+||| ..|..|-+++ ..||+||.++....-
T Consensus 28 ~~~~CgH-~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 28 VSTECGH-VFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp EEETTCC-EEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred EecCCCC-hhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 8899999 6799999776 589999999976543
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.37 E-value=0.17 Score=46.43 Aligned_cols=34 Identities=38% Similarity=0.898 Sum_probs=27.1
Q ss_pred chhhcccCCchhhhhHhhhhc-----cCCCcccccccCCc
Q 002059 72 VQYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKKR 106 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~G 106 (973)
.+.|..+|||. .|..|..++ ..||+||.++....
T Consensus 34 ~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 34 ADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp SSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 45677899997 599998754 47999999998754
No 50
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.33 E-value=0.11 Score=41.52 Aligned_cols=26 Identities=38% Similarity=0.968 Sum_probs=21.8
Q ss_pred chhhcccCCchhhhhHhhhhc-------cCCCcc
Q 002059 72 VQYVLNSCGHASLCAECRQRC-------DFCPIC 98 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~-------~~cpic 98 (973)
.+.|+++|||. .|..|.++. ..||+|
T Consensus 26 ~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 26 KEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred CccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 45678899998 899998877 679988
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.17 E-value=0.12 Score=53.30 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=27.9
Q ss_pred hcc-cchhhcccCCchhhhhHhhhhc----c-CCCcccccccCC
Q 002059 68 CGR-YVQYVLNSCGHASLCAECRQRC----D-FCPICRIPVPKK 105 (973)
Q Consensus 68 cg~-~~~~vl~~c~h~~lc~~c~~~~----~-~cpicr~~Ipk~ 105 (973)
|+. ..|=|..|||| +-|..|-++| . .||+||.++...
T Consensus 214 ~~~~~~dPv~~~~gh-~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 214 SFELMREPCITPSGI-TYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp TCSBCSSEEECSSCC-EEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cCCHhcCCeECCCCC-EECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 444 45788999999 5688887765 2 399999999653
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=87.94 E-value=0.16 Score=46.71 Aligned_cols=30 Identities=37% Similarity=1.016 Sum_probs=25.9
Q ss_pred hcccCCchhhhhHhhhh----ccCCCcccccccCC
Q 002059 75 VLNSCGHASLCAECRQR----CDFCPICRIPVPKK 105 (973)
Q Consensus 75 vl~~c~h~~lc~~c~~~----~~~cpicr~~Ipk~ 105 (973)
|..+|||. .|..|.++ -+.||+||.+|.++
T Consensus 93 ~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 93 VSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp EEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred EeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 78899996 79999865 47999999999875
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=87.13 E-value=0.084 Score=51.12 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=25.9
Q ss_pred chhhcccCCchhhhhHhhhhc-----cCCCccccccc
Q 002059 72 VQYVLNSCGHASLCAECRQRC-----DFCPICRIPVP 103 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ip 103 (973)
.+-|..+|||. .|..|-+++ ..||+||.+|.
T Consensus 42 ~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 42 RRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp SSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35577899997 699999988 58999999874
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.92 E-value=0.19 Score=43.93 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=24.1
Q ss_pred hhhcccCCchhhhhHhhhhc----cCCCcccccccC
Q 002059 73 QYVLNSCGHASLCAECRQRC----DFCPICRIPVPK 104 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk 104 (973)
-+++.+|||. .|..|-++. ..||+||.++..
T Consensus 42 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 42 VVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 3456679996 789998755 679999998764
No 55
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.41 E-value=0.17 Score=41.50 Aligned_cols=26 Identities=35% Similarity=0.944 Sum_probs=21.2
Q ss_pred chhhcccCCchhhhhHhhhhcc-------CCCcc
Q 002059 72 VQYVLNSCGHASLCAECRQRCD-------FCPIC 98 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~~-------~cpic 98 (973)
.+.|.++|||. .|..|.++.- .||+|
T Consensus 31 ~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 31 QKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp SSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 35677799998 7999987764 69998
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.33 E-value=4.3 Score=46.63 Aligned_cols=159 Identities=18% Similarity=0.073 Sum_probs=93.8
Q ss_pred cCCChhhHHHHhHhhhccCCCchHHHHHhh-hCCCCCCCCChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHH
Q 002059 434 FSITRHSLLESLTFYLLDDQADEALQEACH-LLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAV 512 (973)
Q Consensus 434 F~Ip~~~~l~iqgfWlLDdh~d~aleeAl~-LLP~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~ 512 (973)
+.|....+.+-.+. ++ .++ ++|.. +||.+..+.....+++.|...|.++.|+.+.+- ..
T Consensus 597 ~~l~~~~~~~~~~~--~~--~~~--~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------------~~ 656 (814)
T 3mkq_A 597 YEISLEVLEFQTLT--LR--GEI--EEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPD--------------QD 656 (814)
T ss_dssp EECCHHHHHHHHHH--HT--TCH--HHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCC--------------HH
T ss_pred EEECcHHHHHhHHH--Hh--CCH--HHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCC--------------cc
Confidence 44555555554442 33 566 88888 775544122347788888899999999987532 13
Q ss_pred HHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCcccccccCcchhHHHHHHH--------HHHHHHHhhhhhhHH
Q 002059 513 TAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVL--------VTEICCLCIRRNLVD 584 (973)
Q Consensus 513 l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~~dL~g~~~~w~~~~E~L--------l~~~f~~C~~~~~ld 584 (973)
..+.+.|++|.+.+|+...+...+. ..|....+.. ....|..|..-..+.
T Consensus 657 ~~f~~~l~~~~~~~A~~~~~~~~~~----------------------~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~ 714 (814)
T 3mkq_A 657 QKFELALKVGQLTLARDLLTDESAE----------------------MKWRALGDASLQRFNFKLAIEAFTNAHDLESLF 714 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTCCCH----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred hheehhhhcCCHHHHHHHHHhhCcH----------------------hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhH
Confidence 5567889999999999998875432 1244333332 233344444444444
Q ss_pred HhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcChHHHHHHHHHhhh
Q 002059 585 RMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQS 641 (973)
Q Consensus 585 ~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~RYiEAv~v~~kL~~ 641 (973)
.|....=+.+..+.+-+-.... . + -..-...|++-|++.||++++.++++
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~-~-~-----~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETT-G-K-----FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-T-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHc-C-c-----hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4444322222222222222221 1 1 23446678999999999999999874
No 57
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=85.89 E-value=0.26 Score=41.93 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=26.2
Q ss_pred chhhcccCCchhhhhHhhhhc-----cCCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~ 105 (973)
.+-|..+|||. .|..|-+++ ..||+||.++...
T Consensus 19 ~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 19 KDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 46678899996 689997654 5699999999764
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=84.29 E-value=0.31 Score=44.64 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=27.6
Q ss_pred cchhhcccCCchhhhhHhhhhcc----CCCcccccccC
Q 002059 71 YVQYVLNSCGHASLCAECRQRCD----FCPICRIPVPK 104 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~~----~cpicr~~Ipk 104 (973)
..|=|.++|||. .|..|-+++- .||+||.++..
T Consensus 39 m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 39 MTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred ccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 347799999996 8999987664 79999999976
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=84.01 E-value=0.47 Score=41.93 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=27.6
Q ss_pred cchhhcccCCchhhhhHhhhhc----cCCCcccccccCC
Q 002059 71 YVQYVLNSCGHASLCAECRQRC----DFCPICRIPVPKK 105 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~----~~cpicr~~Ipk~ 105 (973)
..|=|.++|||. .|..|-+++ ..||+||.++...
T Consensus 24 m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 24 MTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 347789999996 899997665 5799999998754
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=83.13 E-value=0.35 Score=44.95 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=25.9
Q ss_pred hhhcccCCchhhhhHhhhhc----cCCCccccc--ccCCc
Q 002059 73 QYVLNSCGHASLCAECRQRC----DFCPICRIP--VPKKR 106 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~----~~cpicr~~--Ipk~G 106 (973)
-+++.+|||. .+..|-.++ ..||+||.+ +.+.|
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~g 105 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWEFQKYG 105 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCCEEECC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcceeecCC
Confidence 4678899996 789998874 789999998 44444
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=82.99 E-value=0.36 Score=47.25 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=26.9
Q ss_pred hhhcccCCchhhhhHhhhhc-----cCCCcccccccCC
Q 002059 73 QYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKK 105 (973)
Q Consensus 73 ~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~ 105 (973)
+-|..+|||. .|..|..+. ..||+||.+|..+
T Consensus 30 ~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 30 EAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp SEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4577899996 699999887 3999999999875
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=80.61 E-value=0.33 Score=46.17 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred cccchhhcccCCchhhhhHhhhh----ccCCCccccc--ccCCc
Q 002059 69 GRYVQYVLNSCGHASLCAECRQR----CDFCPICRIP--VPKKR 106 (973)
Q Consensus 69 g~~~~~vl~~c~h~~lc~~c~~~----~~~cpicr~~--Ipk~G 106 (973)
|...-+++.+|||. .|..|-.+ -..||+||.+ +.+.|
T Consensus 74 ~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~~~k~g 116 (117)
T 4a0k_B 74 SEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWEFQKYG 116 (117)
T ss_dssp --------------------------------------------
T ss_pred ccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeeeeeccC
Confidence 34455677899996 78999877 4689999998 44444
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=78.40 E-value=0.87 Score=46.24 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=25.9
Q ss_pred chhhcccCCchhhhhHhhhhc-----cCCCcccccccCC
Q 002059 72 VQYVLNSCGHASLCAECRQRC-----DFCPICRIPVPKK 105 (973)
Q Consensus 72 ~~~vl~~c~h~~lc~~c~~~~-----~~cpicr~~Ipk~ 105 (973)
-|=|.+|||| +-|..|-+++ ..||+||.++...
T Consensus 117 ~DPV~~~~Gh-tfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 117 REPCITPSGI-TYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp SSEEECTTSC-EEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCeECCCCC-EECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4778899999 6789986654 2599999998754
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=73.86 E-value=33 Score=35.37 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=54.8
Q ss_pred HHHHhHhhhccCCCchHHHHHhhhCCCCCCCCChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHh
Q 002059 441 LLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVE 520 (973)
Q Consensus 441 ~l~iqgfWlLDdh~d~aleeAl~LLP~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLa 520 (973)
.....|..++. .+++ ++|+..+-....+..+-.++++++..|+++.|+..++..-.. .|.-.-..=+...+.+...
T Consensus 103 ~~~~la~~~~~-~g~~--~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 103 FLLMAASIYFY-DQNP--DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-DEDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHHHHH-TTCH--HHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-CCCH--HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CcCcHHHHHHHHHHHHHhC
Confidence 34566777777 7787 899998755223334445777888999999999877765211 1211000001112344445
Q ss_pred cCChhHHHHHhhhh
Q 002059 521 CALLTEAFTYQRML 534 (973)
Q Consensus 521 n~lItEAF~~qR~~ 534 (973)
.|...||+...+..
T Consensus 179 ~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 179 GEKLQDAYYIFQEM 192 (291)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 57889998887654
No 65
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=71.77 E-value=1.8 Score=39.36 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=27.7
Q ss_pred cchhhcccCCchhhhhHhhhhcc----CCCcccccccCC
Q 002059 71 YVQYVLNSCGHASLCAECRQRCD----FCPICRIPVPKK 105 (973)
Q Consensus 71 ~~~~vl~~c~h~~lc~~c~~~~~----~cpicr~~Ipk~ 105 (973)
..|=|.++||-++.|..|-+++- .||+||.++...
T Consensus 32 m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 32 MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred ccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34779999993367899987764 699999998764
No 66
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=68.12 E-value=74 Score=32.75 Aligned_cols=56 Identities=25% Similarity=0.164 Sum_probs=41.5
Q ss_pred CChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhc
Q 002059 472 TTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLC 535 (973)
Q Consensus 472 w~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~ 535 (973)
..+..+..++...|+++.|+.+++.. .++.-......+++..|...||....+...
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQG--------DSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTC--------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445667788999999999998872 133444456678889999999999877653
No 67
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=54.04 E-value=16 Score=42.63 Aligned_cols=64 Identities=14% Similarity=0.375 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcChHHHHHHHHHhh
Q 002059 570 VTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQ 640 (973)
Q Consensus 570 l~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~RYiEAv~v~~kL~ 640 (973)
-..+|++-++.++-++||++. .-.|+.||.+.+..+ ....+||--||-+|++|.+|.++-.+|-
T Consensus 181 H~~LYdWli~~gl~d~LL~i~-----sPfle~yL~r~~~~~--~~~~dLLWryy~k~~~~~~AA~VL~~LA 244 (525)
T 3i5p_A 181 HYHMYDWLVSQNREEKLLDIE-----TPFILPYLMEKAGSS--LKISNILWVYYSRRSKFFESAEILYRLA 244 (525)
T ss_dssp HHHHHHHHHHTTCGGGGGGCC-----CTTHHHHHHHTCC-----CHHHHHHTHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchhhcCC-----CchHHHHHHhcCccc--hhHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445788888999999999987 336778887754322 1236899999999999999999999995
No 68
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.53 E-value=3.7 Score=36.70 Aligned_cols=32 Identities=31% Similarity=0.669 Sum_probs=24.2
Q ss_pred chhhccc-CCchhhhhHhhhhc----------cCCCc--cccc-ccC
Q 002059 72 VQYVLNS-CGHASLCAECRQRC----------DFCPI--CRIP-VPK 104 (973)
Q Consensus 72 ~~~vl~~-c~h~~lc~~c~~~~----------~~cpi--cr~~-Ipk 104 (973)
.|=|.++ ||| +.|..|-+++ ..||+ |+.+ +..
T Consensus 18 ~dPV~~~~cGh-~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 18 KKPVKNKVCGH-TYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSEEEESSSCC-EEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cCCEEcCCCCC-eecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4678886 999 5788887655 38999 9977 554
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=53.50 E-value=2.6e+02 Score=30.80 Aligned_cols=191 Identities=8% Similarity=0.072 Sum_probs=94.6
Q ss_pred HHHHhhhCCCCCCCCChHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHH-hc---------CChhH
Q 002059 458 LQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRV-EC---------ALLTE 526 (973)
Q Consensus 458 leeAl~LLP~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlL-an---------~lItE 526 (973)
+++|+.+-|. .+..+-.+..++...|+++.|+.+++.. ..+ |. .++...+-..+ .. |...|
T Consensus 126 ~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~ 197 (474)
T 4abn_A 126 LSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KN----KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197 (474)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CC----HHHHHHHHHHHTTCCCSCHHHHHHHHHH
T ss_pred HHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----HHHHHHHHHHHHHhccCChhhhhhhHHH
Confidence 5666666443 2334455777888999999999876654 322 32 24444444444 33 67888
Q ss_pred HHHHhhhhchHHHhhhhccCCCCCcccccccCcchhHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHccc
Q 002059 527 AFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDS 606 (973)
Q Consensus 527 AF~~qR~~~~~v~e~~~~~~~~~~~~~dL~g~~~~w~~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~ 606 (973)
|..+.+..-..- + + ....|...+..++..+|......+..++ =.++|.+.|.-.
T Consensus 198 A~~~~~~al~~~----p----------~---~~~~~~~lg~~~~~~~~~~~~~~g~~~~---------A~~~~~~al~~~ 251 (474)
T 4abn_A 198 SVRQAKLAVQMD----V----------L---DGRSWYILGNAYLSLYFNTGQNPKISQQ---------ALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHHHHHC----T----------T---CHHHHHHHHHHHHHHHHHTTCCHHHHHH---------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC----C----------C---CHHHHHHHHHHHHHHHHhhccccchHHH---------HHHHHHHHHHhC
Confidence 888766543210 0 0 1234444444443333332221122222 234555555432
Q ss_pred CC--CCCCCCcchhhHHHHHhhcChHHHHHHHHHhhhhhhhhccCCCCcHHHHHHhHhhHHHHHHHHHHHhhhCcHHHHH
Q 002059 607 AT--DDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQ 684 (973)
Q Consensus 607 ~~--~~~~~~~~sLLlVyyLQR~RYiEAv~v~~kL~~~eq~~~~~~s~s~e~~~r~r~~s~~R~~Lv~~y~~~LP~VQR~ 684 (973)
+. ..+ ..-..+-..|.+.|+|.+|+...++.-....+... .-....++......-...+..|.++-+.--.+
T Consensus 252 p~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~----a~~~l~~~~~~lg~~~eAi~~~~~~~~~~l~~ 325 (474)
T 4abn_A 252 RKASSNP--DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE----PQQREQQLLEFLSRLTSLLESKGKTKPKKLQS 325 (474)
T ss_dssp GGGGGCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcccCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHhccccCccHHH
Confidence 20 110 11233456677899999999999986432222111 00111122222223334455666665555555
Q ss_pred HHHc
Q 002059 685 LLKN 688 (973)
Q Consensus 685 l~~~ 688 (973)
++..
T Consensus 326 ~~~~ 329 (474)
T 4abn_A 326 MLGS 329 (474)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5544
No 70
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.58 E-value=15 Score=46.01 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=100.8
Q ss_pred HHHhHhhhccCCCchHHHHHhhhCCCCCC----------------------------CCChHHHHHHHHhCCCchhHHHH
Q 002059 442 LESLTFYLLDDQADEALQEACHLLPEISG----------------------------PTTHPKIAQVLLERENPEAALMV 493 (973)
Q Consensus 442 l~iqgfWlLDdh~d~aleeAl~LLP~is~----------------------------pw~h~kIlqvLl~rg~~d~AL~y 493 (973)
.+++|--+|+ -+++ ++|++++-..+. +.+.-+|+..|-.++.++.|+.+
T Consensus 845 ~yl~g~~~L~-~ge~--~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 845 VYLKALIYLK-SKEA--VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHH-TTCH--HHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHh-cCCH--HHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4677888888 6776 777766521110 12345688878789999999877
Q ss_pred HHHh-cCCCCCCccCHHHH--HHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCcccccccCcchhHHHHHHHH
Q 002059 494 LRWS-GRDGGSLLVSLSEA--VTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLV 570 (973)
Q Consensus 494 lr~~-g~d~~P~l~SlsEA--~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~~dL~g~~~~w~~~~E~Ll 570 (973)
.+.. ... .+.-.++... ...++-.|+-++.-||+.-.-+.++.-.+ .+-+.+||
T Consensus 922 a~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r----------------------~~cLr~LV 978 (1139)
T 4fhn_B 922 SLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK----------------------KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC----------------------HHHHHHHH
T ss_pred HHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH----------------------HHHHHHHH
Confidence 6643 111 0111111111 12345578888999998888666543110 12366777
Q ss_pred HHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccC----CCCCCCCcchhhHHHHHhhcChHHHHHHH-HHhhh
Q 002059 571 TEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSA----TDDPSTTVGSLLVVFYIQRYRYAEAYQVN-LKLQS 641 (973)
Q Consensus 571 ~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~----~~~~~~~~~sLLlVyyLQR~RYiEAv~v~-~kL~~ 641 (973)
..+|+ ++.+++|+.|||...++++ .+-|...+ -.........+|--|++.||+|=.|..+- +++++
T Consensus 979 ~~lce----~~~~~~L~~lpf~gl~~~V-d~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTK----QGKINQLLNYSMPTLRQDV-DNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHH----HCCHHHHHHHTTTSCHHHH-HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHh----CCChhhhhCCCCccHHHHH-HHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 77665 4679999999998766543 22232211 11111234689999999999999887654 34443
No 71
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=46.84 E-value=5.1 Score=37.27 Aligned_cols=32 Identities=38% Similarity=0.921 Sum_probs=27.6
Q ss_pred hhcccCCchhhhhHhhhh----ccCCCcccccccCC
Q 002059 74 YVLNSCGHASLCAECRQR----CDFCPICRIPVPKK 105 (973)
Q Consensus 74 ~vl~~c~h~~lc~~c~~~----~~~cpicr~~Ipk~ 105 (973)
-=|..|.-+-||..|-.. =++||||-.|+|..
T Consensus 39 k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 39 KGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 367889999999999864 58999999999975
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.88 E-value=4.8 Score=43.37 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=27.1
Q ss_pred ccchhhcc-cCCchhhhhHhhhhc------cCCCc--ccccccCCc
Q 002059 70 RYVQYVLN-SCGHASLCAECRQRC------DFCPI--CRIPVPKKR 106 (973)
Q Consensus 70 ~~~~~vl~-~c~h~~lc~~c~~~~------~~cpi--cr~~Ipk~G 106 (973)
...+=|.. .||| +-|..|-.++ ..||+ ||.++....
T Consensus 190 ~f~DPVts~~CGH-sFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 190 PYEAPLISRKCNH-VFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCSSEEEESSSCC-EEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred cccCCeeeCCCCC-cccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 34556654 9999 6899998776 36999 999987543
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.30 E-value=6.1 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.565 Sum_probs=23.4
Q ss_pred hhcccCC-----chhhhhHhhhhc------cCCCcccccccC
Q 002059 74 YVLNSCG-----HASLCAECRQRC------DFCPICRIPVPK 104 (973)
Q Consensus 74 ~vl~~c~-----h~~lc~~c~~~~------~~cpicr~~Ipk 104 (973)
.++.||+ |. ....|.+++ ..||+||.+++-
T Consensus 30 ~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 30 PLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred eeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4568996 65 568888888 489999999864
No 74
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=41.99 E-value=2.3e+02 Score=30.88 Aligned_cols=134 Identities=13% Similarity=-0.020 Sum_probs=69.3
Q ss_pred hHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCccc
Q 002059 474 HPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFD 553 (973)
Q Consensus 474 h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~~ 553 (973)
.-.++..+...|+++.|+.+++..-.. .|. ...-......+....|.+.||..+.+...+...+. +..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~-- 511 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYAL-FQY--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-------QSN-- 511 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-------CCC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-------ccc--
Confidence 344667777888999998877765210 121 22333345566778888888888876543322110 000
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcChHHHH
Q 002059 554 DLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAY 633 (973)
Q Consensus 554 dL~g~~~~w~~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~RYiEAv 633 (973)
-..|.. ....+...|...+..+ +=+++|.+.+...+. ++ ..-..+...|.+.|++.||.
T Consensus 512 -----p~~~~~----~~~~l~~~~~~~g~~~---------~A~~~~~~~~~~~p~-~~--~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 512 -----EKPWAA----TWANLGHAYRKLKMYD---------AAIDALNQGLLLSTN-DA--NVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp -----SGGGHH----HHHHHHHHHHHTTCHH---------HHHHHHHHHHHHSSC-CH--HHHHHHHHHHHHTTCHHHHH
T ss_pred -----hhhHHH----HHHHHHHHHHHhcCHH---------HHHHHHHHHHHhCCC-Ch--HHHHHHHHHHHHhCCHHHHH
Confidence 001111 1111222222333322 223445555543221 11 12334555678899999999
Q ss_pred HHHHHhh
Q 002059 634 QVNLKLQ 640 (973)
Q Consensus 634 ~v~~kL~ 640 (973)
++.++.-
T Consensus 571 ~~~~~~l 577 (597)
T 2xpi_A 571 THLHESL 577 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 75
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=38.42 E-value=1.6e+02 Score=29.10 Aligned_cols=56 Identities=18% Similarity=0.006 Sum_probs=27.1
Q ss_pred hHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhh
Q 002059 474 HPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRM 533 (973)
Q Consensus 474 h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~ 533 (973)
+-.+..++...|+++.|+.++... ..+ | ....-....-.+....|...+|..+.+.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALK--M--DFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--C--CcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 333555566667777776555433 111 1 1112222333445556666666665544
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=38.26 E-value=2e+02 Score=25.13 Aligned_cols=85 Identities=11% Similarity=0.006 Sum_probs=49.6
Q ss_pred HhHhhhccCCCchHHHHHhhhCCCCCC--C---CChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHH
Q 002059 444 SLTFYLLDDQADEALQEACHLLPEISG--P---TTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIR 518 (973)
Q Consensus 444 iqgfWlLDdh~d~aleeAl~LLP~is~--p---w~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~Vl 518 (973)
..|..++. .+++ ++|+.++-.... | .....+..++...|+++.|+.++...-.- .| ....-......+.
T Consensus 13 ~~~~~~~~-~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~~~~~a~~~ 86 (186)
T 3as5_A 13 DKGISHAK-AGRY--SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-AP--DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHH-HTCH--HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--TCHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCH--HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC--CCHHHHHHHHHHH
Confidence 34555555 5666 777777643211 2 22334666777899999999877754210 02 1222222334556
Q ss_pred HhcCChhHHHHHhhhh
Q 002059 519 VECALLTEAFTYQRML 534 (973)
Q Consensus 519 Lan~lItEAF~~qR~~ 534 (973)
...|...+|..+.+..
T Consensus 87 ~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 7778899998876654
No 77
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.94 E-value=8.9 Score=33.84 Aligned_cols=28 Identities=21% Similarity=0.631 Sum_probs=20.8
Q ss_pred ccCCchhhhhHhhhh------------ccCCCc--cccc--ccCC
Q 002059 77 NSCGHASLCAECRQR------------CDFCPI--CRIP--VPKK 105 (973)
Q Consensus 77 ~~c~h~~lc~~c~~~------------~~~cpi--cr~~--Ipk~ 105 (973)
.+|||. .|..|-++ -..||. |+.. |+..
T Consensus 24 ~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 24 AQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp TTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 489995 89999543 247999 9988 6543
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=34.88 E-value=1.6e+02 Score=27.96 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=62.4
Q ss_pred HHHHHHhhccCCcCCCcchhhHHHHHHhHcCCChhh--HHHHhHhhhccCCCchHHHHHhhhC-------CCCCCCCChH
Q 002059 405 AIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHS--LLESLTFYLLDDQADEALQEACHLL-------PEISGPTTHP 475 (973)
Q Consensus 405 AI~lYlLLD~~~~~p~~~~~~lle~Fa~tF~Ip~~~--~l~iqgfWlLDdh~d~aleeAl~LL-------P~is~pw~h~ 475 (973)
+..+|.+-.......+ +...++-|.....+.+.. .....|..++. .+++ ++|+.++ |. .+....
T Consensus 37 ~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~--~~A~~~~~~a~~~~~~--~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGN--TEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEP--KLADEEYRKALASDSR--NARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTC--TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH--HHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCH--HHHHHHHHHHHHHCcC--cHHHHH
Confidence 4444444443332222 334556666666554432 23333444444 4454 4444443 32 123334
Q ss_pred HHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHH-HHHHHHHhcCChhHHHHHhhhh
Q 002059 476 KIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAV-TAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 476 kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~-l~l~VlLan~lItEAF~~qR~~ 534 (973)
.+...+...|+++.|+.++...-.. +......++. ....+.+..|...+|..+.+..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQD--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhC--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4666777899999999887765321 1011122222 2334567788888888876654
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=34.05 E-value=2.6e+02 Score=25.54 Aligned_cols=20 Identities=10% Similarity=-0.170 Sum_probs=12.4
Q ss_pred HHHHHhhcChHHHHHHHHHh
Q 002059 620 VVFYIQRYRYAEAYQVNLKL 639 (973)
Q Consensus 620 lVyyLQR~RYiEAv~v~~kL 639 (973)
...|++.|+|.+|..+.++.
T Consensus 154 a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 34456666777776666654
No 80
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=33.33 E-value=1.9e+02 Score=26.99 Aligned_cols=59 Identities=12% Similarity=-0.060 Sum_probs=37.9
Q ss_pred CChHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhh
Q 002059 472 TTHPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 472 w~h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~ 534 (973)
..+..+...+...|+++.|+.++... ..+ | ....-......+.+..|...+|..+.+..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG--M--ENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--C--CSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444677788899999999877654 211 2 12222333445677889999999887654
No 81
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=33.12 E-value=3.5e+02 Score=28.09 Aligned_cols=59 Identities=8% Similarity=0.011 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhh
Q 002059 473 THPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 473 ~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~ 534 (973)
....+..++...|+++.|+.++...-.. .| ....-......+....|...+|+.+.+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKL-KN--DNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHH-HC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445777888999999999877754110 02 12233334456677889999999887754
No 82
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=32.07 E-value=3.7e+02 Score=26.21 Aligned_cols=150 Identities=9% Similarity=-0.071 Sum_probs=79.0
Q ss_pred HHHHhhhCCCCCCCCChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchH
Q 002059 458 LQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTK 537 (973)
Q Consensus 458 leeAl~LLP~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~ 537 (973)
+++|+.+-|.. +..+..+...+...|+++.|+.+++..-.. .| ....-....-.+....|...+|..+.+.....
T Consensus 148 ~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 148 YFTAAQLMKGC--HLPMLYIGLEYGLTNNSKLAERFFSQALSI-AP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHTTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34445554442 223344777888999999999887765211 12 12333344556778899999999988765443
Q ss_pred HHhhhhccCCCCCcccccccCcchhHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcch
Q 002059 538 VREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGS 617 (973)
Q Consensus 538 v~e~~~~~~~~~~~~~dL~g~~~~w~~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~s 617 (973)
..+... ....+. ....|. .+..++. ..+..+ +=.++|.+.+...+. .+ ..-.
T Consensus 223 ~~~~~~-----~~~~~~---~~~~~~-----~la~~~~---~~g~~~---------~A~~~~~~a~~~~~~-~~--~~~~ 274 (330)
T 3hym_B 223 IKAIGN-----EVTVDK---WEPLLN-----NLGHVCR---KLKKYA---------EALDYHRQALVLIPQ-NA--STYS 274 (330)
T ss_dssp HTTTSC-----SCTTTT---CCHHHH-----HHHHHHH---HTTCHH---------HHHHHHHHHHHHSTT-CS--HHHH
T ss_pred hhhccc-----cccccH---HHHHHH-----HHHHHHH---HhcCHH---------HHHHHHHHHHhhCcc-ch--HHHH
Confidence 221100 000000 011111 1112221 222221 223555555544322 11 1233
Q ss_pred hhHHHHHhhcChHHHHHHHHHhh
Q 002059 618 LLVVFYIQRYRYAEAYQVNLKLQ 640 (973)
Q Consensus 618 LLlVyyLQR~RYiEAv~v~~kL~ 640 (973)
.+-..|.+.|+|.+|+....+.-
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 45567889999999999998864
No 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=31.34 E-value=5.4e+02 Score=27.93 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=30.4
Q ss_pred CChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhh
Q 002059 472 TTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRM 533 (973)
Q Consensus 472 w~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~ 533 (973)
.....++..+...|+.+.|+.++...-.. .| ....-......+...+|.+.||..+.+.
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDR-HP--EKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--TSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cc--ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34455666666777777777666544110 01 1111122233455666777777666543
No 84
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=30.42 E-value=3e+02 Score=26.39 Aligned_cols=85 Identities=16% Similarity=0.046 Sum_probs=47.7
Q ss_pred HHhHhhhccCCCchHHHHHhhhCCC-----CCCCCChHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHH
Q 002059 443 ESLTFYLLDDQADEALQEACHLLPE-----ISGPTTHPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVR 516 (973)
Q Consensus 443 ~iqgfWlLDdh~d~aleeAl~LLP~-----is~pw~h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~ 516 (973)
...|..++. .+++ ++|+..+-. ...+..+..+..++...|+++.|+.+++.. ..+ | ....-....-.
T Consensus 9 ~~lg~~~~~-~g~~--~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P--~~~~a~~~lg~ 81 (217)
T 2pl2_A 9 LRLGVQLYA-LGRY--DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--P--RYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHH-TTCH--HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--TCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--CcHHHHHHHHH
Confidence 345666666 5666 666655421 122234445777888999999999776643 322 2 12222222233
Q ss_pred HHHhc-----------CChhHHHHHhhhh
Q 002059 517 IRVEC-----------ALLTEAFTYQRML 534 (973)
Q Consensus 517 VlLan-----------~lItEAF~~qR~~ 534 (973)
+.+.. |...||....+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 44555 7778888776543
No 85
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=28.91 E-value=4.6e+02 Score=26.85 Aligned_cols=71 Identities=17% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHhhhCCCCCCCCChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhh
Q 002059 459 QEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 459 eeAl~LLP~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~ 534 (973)
++|+.+-|. .+..+..+..++...|+++.|+.+++..-.- .|. ...-......+....|.+.||..+.+..
T Consensus 227 ~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 227 LRALSLSPN--HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPH--FPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhhCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444554332 2334556778888999999999877654211 121 2222233445677789999999886654
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.49 E-value=3.7e+02 Score=27.14 Aligned_cols=125 Identities=15% Similarity=0.081 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCccc
Q 002059 475 PKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFD 553 (973)
Q Consensus 475 ~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~~ 553 (973)
-.....++..|+++.|+..++.. ..+ | ....-....-.+++..|...||....+.....-.
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~--P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-------------- 182 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS--N--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-------------- 182 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT--T--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--C--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--------------
Confidence 34666788899999999776643 222 2 1333333455678889999999988776532100
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcChHHHH
Q 002059 554 DLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAY 633 (973)
Q Consensus 554 dL~g~~~~w~~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~RYiEAv 633 (973)
+ .. ...+... ..+...--.++..+.|.+.|...+... ...-.+-..|++.|||.||+
T Consensus 183 ~-------~~--~~~~~~~-----------~~l~~~~~~~~a~~~l~~al~~~P~~~---~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 183 D-------TR--YQGLVAQ-----------IELLXQAADTPEIQQLQQQVAENPEDA---ALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp S-------HH--HHHHHHH-----------HHHHHHHTSCHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred c-------hH--HHHHHHH-----------HHHHhhcccCccHHHHHHHHhcCCccH---HHHHHHHHHHHHcccHHHHH
Confidence 1 00 0011000 011111123345667777776543321 12334566788999999999
Q ss_pred HHHHHhh
Q 002059 634 QVNLKLQ 640 (973)
Q Consensus 634 ~v~~kL~ 640 (973)
...+++-
T Consensus 240 ~~l~~~l 246 (287)
T 3qou_A 240 ELLFGHL 246 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 87
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=26.28 E-value=5.8e+02 Score=26.71 Aligned_cols=81 Identities=11% Similarity=-0.012 Sum_probs=48.6
Q ss_pred HhHhhhccCCCchHHHHHhhhC-------CCCCCCCChHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHH
Q 002059 444 SLTFYLLDDQADEALQEACHLL-------PEISGPTTHPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAV 515 (973)
Q Consensus 444 iqgfWlLDdh~d~aleeAl~LL-------P~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l 515 (973)
..|..++. .+++ ++|+.++ |. +..+..+..++...|+++.|+.++... ..+ |. ...-.....
T Consensus 242 ~~~~~~~~-~~~~--~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--~~~~~~~l~ 311 (514)
T 2gw1_A 242 HTGIFKFL-KNDP--LGAHEDIKKAIELFPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SN--NSSVYYHRG 311 (514)
T ss_dssp HHHHHHHH-SSCH--HHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TT--CTHHHHHHH
T ss_pred HHHHHHHH-CCCH--HHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cC--CHHHHHHHH
Confidence 34545555 4555 4554443 33 334445677788899999999877654 222 21 222223444
Q ss_pred HHHHhcCChhHHHHHhhhh
Q 002059 516 RIRVECALLTEAFTYQRML 534 (973)
Q Consensus 516 ~VlLan~lItEAF~~qR~~ 534 (973)
.+....|...+|+.+.+..
T Consensus 312 ~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 5677788999998887654
No 88
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=25.51 E-value=1.4e+02 Score=28.46 Aligned_cols=171 Identities=13% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHcCCChh--hHHHHhHhhhccCCCchHHHHHhhhC-----CCCCCCCChHHHHHHHHhCCCchhHHHHHH
Q 002059 423 WRHIVDDFAATFSITRH--SLLESLTFYLLDDQADEALQEACHLL-----PEISGPTTHPKIAQVLLERENPEAALMVLR 495 (973)
Q Consensus 423 ~~~lle~Fa~tF~Ip~~--~~l~iqgfWlLDdh~d~aleeAl~LL-----P~is~pw~h~kIlqvLl~rg~~d~AL~ylr 495 (973)
|...+.-|..+..+.+. ......|..++. .+++ ++|+.++ -....+..+..+..++...|+++.|+.+++
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNF--DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCH--HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCH--HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Q ss_pred HhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCcccccccCcchhHHHHHHHHHHHHH
Q 002059 496 WSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICC 575 (973)
Q Consensus 496 ~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~~dL~g~~~~w~~~~E~Ll~~~f~ 575 (973)
..- -.-.....+...+.+....|...+|..+ +.....
T Consensus 136 ~a~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~---------------------------------------~~~~~~ 172 (275)
T 1xnf_A 136 AFY----QDDPNDPFRSLWLYLAEQKLDEKQAKEV---------------------------------------LKQHFE 172 (275)
T ss_dssp HHH----HHCTTCHHHHHHHHHHHHHHCHHHHHHH---------------------------------------HHHHHH
T ss_pred HHH----HhCCCChHHHHHHHHHHHhcCHHHHHHH---------------------------------------HHHHHh
Q ss_pred HhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCC-----CCcchhhHHHHHhhcChHHHHHHHHHh
Q 002059 576 LCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPS-----TTVGSLLVVFYIQRYRYAEAYQVNLKL 639 (973)
Q Consensus 576 ~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~-----~~~~sLLlVyyLQR~RYiEAv~v~~kL 639 (973)
........-.++.+-+...+.+--.+++...-...+. ...-..+-..|++.|+|.+|+....+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
No 89
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=25.41 E-value=3.2e+02 Score=28.39 Aligned_cols=55 Identities=7% Similarity=-0.135 Sum_probs=32.2
Q ss_pred HHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcChHHHHHHHHHhh
Q 002059 583 VDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQ 640 (973)
Q Consensus 583 ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~RYiEAv~v~~kL~ 640 (973)
..-+..+==-++-.++|.+.+...+... ..-..+...|.+.|+|.+|+...++.-
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNT---EAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCH---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444333445567777775533211 112344556778899999999888874
No 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=25.38 E-value=4.3e+02 Score=24.88 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhh
Q 002059 476 KIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 476 kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~ 534 (973)
.+..++...|+++.|+.++... ..+ |. ...-......+.+..|...+|..+.+..
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~~~--~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALASD--SR--NARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cC--cHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3555566677777777655533 111 11 1122222334556667777777665554
No 91
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=24.46 E-value=5e+02 Score=25.25 Aligned_cols=130 Identities=12% Similarity=-0.047 Sum_probs=70.9
Q ss_pred CCChHHHHHHHHhCC-CchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCC
Q 002059 471 PTTHPKIAQVLLERE-NPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTI 548 (973)
Q Consensus 471 pw~h~kIlqvLl~rg-~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~ 548 (973)
+..+-.+..++...| +++.|+.++... ..+ |. ...-....-.+....|...+|+.+.+........
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------- 157 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KT--YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-------- 157 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TT--CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--Cc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--------
Confidence 334455677778899 999999877654 322 21 2222334556778889999999887654322110
Q ss_pred CCcccccccCcchhHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcC
Q 002059 549 GETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYR 628 (973)
Q Consensus 549 ~~~~~dL~g~~~~w~~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~R 628 (973)
....|. .+..++. ..+.. ++-.++|.+.+...+.. + ..-..+-..|++.++
T Consensus 158 ---------~~~~~~-----~l~~~~~---~~~~~---------~~A~~~~~~al~~~~~~-~--~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 158 ---------CHLPML-----YIGLEYG---LTNNS---------KLAERFFSQALSIAPED-P--FVMHEVGVVAFQNGE 208 (330)
T ss_dssp ---------CSHHHH-----HHHHHHH---HTTCH---------HHHHHHHHHHHTTCTTC-H--HHHHHHHHHHHHTTC
T ss_pred ---------cHHHHH-----HHHHHHH---HHhhH---------HHHHHHHHHHHHhCCCC-h--HHHHHHHHHHHHccc
Confidence 011121 1222221 12222 12334555555433221 0 112345566889999
Q ss_pred hHHHHHHHHHhhh
Q 002059 629 YAEAYQVNLKLQS 641 (973)
Q Consensus 629 YiEAv~v~~kL~~ 641 (973)
|.+|.....+.-+
T Consensus 209 ~~~A~~~~~~a~~ 221 (330)
T 3hym_B 209 WKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 92
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=24.36 E-value=6.6e+02 Score=26.65 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=68.6
Q ss_pred hHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCcc
Q 002059 474 HPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETF 552 (973)
Q Consensus 474 h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~ 552 (973)
...+..++...|+++.|+.++... ..+ | ....-....-.+.+..|...+|..+.+.....-.
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------- 341 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLN--P--EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP------------- 341 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHC--T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccC--C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------------
Confidence 334666677899999999877654 211 2 1222223344567788999999988765432100
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHHHHHhhcChHHH
Q 002059 553 DDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEA 632 (973)
Q Consensus 553 ~dL~g~~~~w~~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlVyyLQR~RYiEA 632 (973)
+ ....|. .+..++. ..+..+ +=.++|.+.+...+.. + ..-..+-..|.+.|+|.+|
T Consensus 342 -~---~~~~~~-----~la~~~~---~~g~~~---------~A~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 342 -E---NVYPYI-----QLACLLY---KQGKFT---------ESEAFFNETKLKFPTL-P--EVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp -T---CSHHHH-----HHHHHHH---HTTCHH---------HHHHHHHHHHHHCTTC-T--HHHHHHHHHHHHTTCHHHH
T ss_pred -C---CHHHHH-----HHHHHHH---HcCCHH---------HHHHHHHHHHHhCCCC-h--HHHHHHHHHHHHhCCHHHH
Confidence 0 011121 1222222 222222 2234455555443221 1 1234556678899999999
Q ss_pred HHHHHHhhh
Q 002059 633 YQVNLKLQS 641 (973)
Q Consensus 633 v~v~~kL~~ 641 (973)
.....+.-.
T Consensus 398 ~~~~~~a~~ 406 (537)
T 3fp2_A 398 IKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998654
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=21.71 E-value=2.4e+02 Score=37.39 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHhhhCCCCCCCCChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhh
Q 002059 458 LQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 458 leeAl~LLP~is~pw~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~ 534 (973)
+++|.++...+..|..+..+..++...|+++.|+..+.-.+ .++.........-..|...||..|..+.
T Consensus 1092 ldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd--------D~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1092 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 48888888777778777889999999999999986543332 2355555667777788888888887764
No 94
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=21.60 E-value=5.8e+02 Score=24.98 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=50.3
Q ss_pred HhhhccCCCchHHHHHhhhCCC-----CCCCCChHHHHHHHHhCCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHh
Q 002059 446 TFYLLDDQADEALQEACHLLPE-----ISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVE 520 (973)
Q Consensus 446 gfWlLDdh~d~aleeAl~LLP~-----is~pw~h~kIlqvLl~rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLa 520 (973)
+..++. .+++ ++|+.++-. ...+..+..+..++...|+++.|+.++...-.. .| ....-....-.+...
T Consensus 127 a~~~~~-~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 127 ALDAFD-GADY--TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KS--DNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHH-TTCH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CS--CCHHHHHHHHHHHHH
T ss_pred HHHHHH-ccCH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH
Confidence 344444 4555 555555421 112234455777888999999999877755211 12 233333445566778
Q ss_pred cCChhHHHHHhhhh
Q 002059 521 CALLTEAFTYQRML 534 (973)
Q Consensus 521 n~lItEAF~~qR~~ 534 (973)
.|...+|..+.+..
T Consensus 201 ~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 201 LGDHELSLSEVREC 214 (359)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 89999999887654
No 95
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=21.58 E-value=2.6e+02 Score=26.01 Aligned_cols=58 Identities=19% Similarity=0.046 Sum_probs=37.2
Q ss_pred ChHHHHHHHHhCCCchhHHHHHHHh-cCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhh
Q 002059 473 THPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRML 534 (973)
Q Consensus 473 ~h~kIlqvLl~rg~~d~AL~ylr~~-g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~ 534 (973)
.+..+..++...|+++.|+.+++.. ..+ | ....-....-.+....|...+|..+.+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELD--S--SAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344667778899999999877654 211 2 12222223445677889999999887654
Done!