Your job contains 1 sequence.
>002060
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGGTID
PNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKDSERKKEEERPREKDRGKSR
NIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDD
GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR
ADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSG
PPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRG
NPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPE
HEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAG
EIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFN
DLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICG
DAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGR
EMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYE
EDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRG
LGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRES
LEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNKRRDRRDEILDSRKRHRSQSQ
SESPPPRKSSIRDRERESDLDRDRERHRDRDRAHDFESERGRERREKSGSRERDDHDRDR
GRDRDRDRRRRVK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002060
(973 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2179295 - symbol:RRC1 "reduced red-light respo... 2792 0. 2
TAIR|locus:2183775 - symbol:AT5G10800 species:3702 "Arabi... 2529 7.5e-304 2
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 870 4.2e-96 2
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 871 6.9e-96 2
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 870 8.8e-96 2
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 870 8.8e-96 2
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 864 3.8e-95 2
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 864 6.1e-95 2
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 860 9.9e-95 2
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 858 2.6e-94 2
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 830 6.2e-93 2
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 761 4.0e-81 2
ZFIN|ZDB-GENE-070410-141 - symbol:zgc:163098 "zgc:163098"... 765 5.2e-79 2
UNIPROTKB|C9JB80 - symbol:U2SURP "U2 snRNP-associated SUR... 495 6.0e-55 2
WB|WBGene00015581 - symbol:C07H6.4 species:6239 "Caenorha... 220 6.3e-51 4
DICTYBASE|DDB_G0281687 - symbol:DDB_G0281687 "U2 snRNP-as... 487 2.1e-42 3
UNIPROTKB|E7EW00 - symbol:U2SURP "U2 snRNP-associated SUR... 398 4.2e-36 1
UNIPROTKB|H0Y8D9 - symbol:U2SURP "U2 snRNP-associated SUR... 398 4.2e-36 1
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 185 4.7e-15 2
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 127 5.0e-07 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 147 8.3e-07 1
UNIPROTKB|F1NDX1 - symbol:CHERP "Uncharacterized protein"... 128 1.2e-06 2
UNIPROTKB|J3QK89 - symbol:CHERP "Calcium homeostasis endo... 131 2.3e-06 3
ZFIN|ZDB-GENE-070615-33 - symbol:sugp1 "SURP and G patch ... 144 3.1e-06 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 126 3.8e-06 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 138 8.6e-06 1
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 119 9.6e-06 2
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 119 9.6e-06 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 137 1.1e-05 1
UNIPROTKB|F1S9W3 - symbol:CHERP "Uncharacterized protein"... 130 1.1e-05 3
UNIPROTKB|Q8IWX8 - symbol:CHERP "Calcium homeostasis endo... 131 1.1e-05 3
UNIPROTKB|F1NDZ9 - symbol:CHERP "Uncharacterized protein"... 128 1.2e-05 2
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 136 1.3e-05 1
UNIPROTKB|A8E648 - symbol:CHERP "CHERP protein" species:9... 130 1.4e-05 3
UNIPROTKB|J9NZK1 - symbol:CHERP "Uncharacterized protein"... 130 1.4e-05 3
UNIPROTKB|E2RHU5 - symbol:CHERP "Uncharacterized protein"... 130 1.5e-05 3
POMBASE|SPBC11C11.01 - symbol:SPBC11C11.01 "U2-associated... 136 1.5e-05 1
ASPGD|ASPL0000075677 - symbol:AN4943 species:162425 "Emer... 101 1.6e-05 3
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 135 1.7e-05 1
UNIPROTKB|F5H5X1 - symbol:SFSWAP "Splicing factor, suppre... 114 2.0e-05 2
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 112 2.0e-05 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 128 3.3e-05 1
UNIPROTKB|G4MV79 - symbol:MGG_15600 "Uncharacterized prot... 95 5.7e-05 3
UNIPROTKB|F1NAQ9 - symbol:SUGP1 "Uncharacterized protein"... 131 6.0e-05 2
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 130 6.2e-05 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 130 7.0e-05 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 129 7.5e-05 1
UNIPROTKB|Q12872 - symbol:SFSWAP "Splicing factor, suppre... 114 7.8e-05 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 130 9.5e-05 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 128 0.00010 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 127 0.00010 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 127 0.00010 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 130 0.00011 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 130 0.00011 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 139 0.00011 2
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 128 0.00011 1
UNIPROTKB|F1RKX4 - symbol:RBFOX1 "Uncharacterized protein... 121 0.00015 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00016 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 128 0.00017 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00017 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00018 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 128 0.00018 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00018 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 128 0.00018 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00018 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 128 0.00019 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 121 0.00020 1
UNIPROTKB|H0YFR9 - symbol:SFSWAP "Splicing factor, suppre... 123 0.00021 1
UNIPROTKB|F2Z2U1 - symbol:RBMY1A1 "RNA-binding motif prot... 102 0.00024 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 123 0.00024 1
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer... 122 0.00024 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 124 0.00025 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 124 0.00026 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 123 0.00030 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 125 0.00038 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 100 0.00038 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 100 0.00038 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 100 0.00038 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 123 0.00042 1
UNIPROTKB|A4FV64 - symbol:SF4 "SF4 protein" species:9913 ... 123 0.00045 2
UNIPROTKB|E2RCV3 - symbol:SUGP1 "Uncharacterized protein"... 123 0.00045 2
UNIPROTKB|J9P8U4 - symbol:SUGP1 "Uncharacterized protein"... 123 0.00046 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 131 0.00047 2
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 99 0.00049 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 124 0.00050 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 123 0.00062 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 120 0.00071 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 113 0.00073 2
ZFIN|ZDB-GENE-040407-1 - symbol:cherp "calcium homeostasi... 118 0.00074 3
UNIPROTKB|I3L1D4 - symbol:RBFOX1 "RNA-binding protein fox... 112 0.00074 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 119 0.00083 1
RGD|1310496 - symbol:Sugp1 "SURP and G patch domain conta... 120 0.00097 2
>TAIR|locus:2179295 [details] [associations]
symbol:RRC1 "reduced red-light responses in cry1cry2
background 1" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0045492
"xylan biosynthetic process" evidence=RCA] [GO:0050665 "hydrogen
peroxide biosynthetic process" evidence=RCA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
PROSITE:PS50800 SMART:SM00360 SMART:SM00648 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 EMBL:AF360212 EMBL:AY040060 IPI:IPI00527464
RefSeq:NP_568464.1 UniGene:At.23362 PDB:2E62 PDBsum:2E62
ProteinModelPortal:Q9C5J3 SMR:Q9C5J3 IntAct:Q9C5J3 PRIDE:Q9C5J3
EnsemblPlants:AT5G25060.1 GeneID:832577 KEGG:ath:AT5G25060
TAIR:At5g25060 HOGENOM:HOG000030509 InParanoid:Q9C5J3 OMA:EPYIMIT
PhylomeDB:Q9C5J3 ProtClustDB:CLSN2689864 EvolutionaryTrace:Q9C5J3
ArrayExpress:Q9C5J3 Genevestigator:Q9C5J3 Uniprot:Q9C5J3
Length = 946
Score = 2792 (987.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 562/777 (72%), Positives = 621/777 (79%)
Query: 1 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDSGPGSKAFVRGGTID 60
MSSFSITRKKTPFQKH LY EFVESFQGD+ +K FVRGGTI+
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDNAT-TKTFVRGGTIN 59
Query: 61 PNDKLK-EAEGEKSKDGVSVPKKGSRYVPSFIPPPLAAXXXXXXXXXXXXXXXXXXXXXS 119
P DK K ++EGEKSKDG SV KKGSRYVPSF+PPPLA+ +
Sbjct: 60 PGDKPKVDSEGEKSKDGGSVSKKGSRYVPSFLPPPLASKGKEPEKKREEERPREREKGKT 119
Query: 120 RNIDNFMEELKHXXXXXXXXXXXXXHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFD 179
RNIDNFMEELK RD R +SS PSSRFDELPDDFDPSG+ PGSFD
Sbjct: 120 RNIDNFMEELKREQEMRERRNQD----RD-RQGDSS-PSSRFDELPDDFDPSGR-PGSFD 172
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
DGDPQTTNLYVGNLSP+VDENFLLRTFGRFGPIASVKIMWPRT+EE+RRQRNCGFV+FMN
Sbjct: 173 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMN 232
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGQMAIRSKEGATVILSGPS 299
RADGQAAKDEMQG++VYEYELKIGWGK+V G MAIRSKEG ++ SG +
Sbjct: 233 RADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALPAPPPGHMAIRSKEGCNLVFSGQT 292
Query: 300 GPPV-TTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 358
GPP+ T+VP+QNSELVLTPNVPDI V+ PED HLRHVIDTLALYVLDG CAFEQAIMERG
Sbjct: 293 GPPIITSVPNQNSELVLTPNVPDITVVTPEDEHLRHVIDTLALYVLDGECAFEQAIMERG 352
Query: 359 RGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKS 418
RGNPLF F+FELGSKEHTYYVWRLYSFAQGDTLQRWRTEP+IMITGSGRWIPP LP +++
Sbjct: 353 RGNPLFKFMFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPYIMITGSGRWIPPPLPVTRT 412
Query: 419 PEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADA 478
EHEKES +TYAAGR+RRAE ERTLTD QRDEFEDMLRALTLERSQIKEAMGFALDNADA
Sbjct: 413 QEHEKESASTYAAGRTRRAEVERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADA 472
Query: 479 AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMES 538
AGE+VEVLTESLTLKET IPTKVARLMLVSD+LHNSSA VKNASAYRTKFEATLPDIMES
Sbjct: 473 AGEVVEVLTESLTLKETSIPTKVARLMLVSDILHNSSARVKNASAYRTKFEATLPDIMES 532
Query: 539 FNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSI 598
FNDLYRSITGRITAEALKERVLKVLQVW+DWFLFSDAY+ GLR+TFLRSG SGVT FHSI
Sbjct: 533 FNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYIYGLRSTFLRSGVSGVTSFHSI 592
Query: 599 CGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVG 658
CGDAPEI+ K+ +++ D+ K N D ALA+GKGAA +ELMNLP++ELERRCRHNGLSLVG
Sbjct: 593 CGDAPEIENKSYADNMSDIGKINPDAALAIGKGAARQELMNLPIAELERRCRHNGLSLVG 652
Query: 659 GREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNG 718
GR MMV RLLSLED EKQRGYE D++ H Q+ S W+E E E + N
Sbjct: 653 GRVMMVTRLLSLEDTEKQRGYEAVDEIPK-HPQNHST-----WEEVKSEREHIK----NS 702
Query: 719 YEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQK 775
Y E E + + V L T + PQPE+KAF KEKN+ +LPASKWA +DDE+DDEQK
Sbjct: 703 YAEVE-MKEPVN---LPTTIPIPQPELKAFVGKEKNELILPASKWARDDDEADDEQK 755
Score = 407 (148.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 94/200 (47%), Positives = 126/200 (63%)
Query: 701 WKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPA 760
W+E E E + N Y E E + + V L T + PQPE+KAF KEKN+ +LPA
Sbjct: 689 WEEVKSEREHIK----NSYAEVE-MKEPVN---LPTTIPIPQPELKAFVGKEKNELILPA 740
Query: 761 SKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGMN 820
SKWA +DDE+DDEQK +N G KAD D + + QPD+GM+
Sbjct: 741 SKWARDDDEADDEQKRSSSSGS--------DNTGGITFKADGEDLKGNDCVRAQPDNGMD 792
Query: 821 EEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK 880
EEQRQK RR+EV+LIEYRE+LEE+G+K+ EEIE+KV I+RKRLE +YGL+ PNE K
Sbjct: 793 EEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLSGPNEGNRNQK 852
Query: 881 ----RRDRRDEILDS-RKRH 895
R+++R++ +S +KRH
Sbjct: 853 SIIERKEKREDSQESSKKRH 872
>TAIR|locus:2183775 [details] [associations]
symbol:AT5G10800 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396
"RNA processing" evidence=IEA] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 UniGene:At.6008 IPI:IPI01019487 RefSeq:NP_196641.2
UniGene:At.32334 ProteinModelPortal:F4KIA8 SMR:F4KIA8 PRIDE:F4KIA8
EnsemblPlants:AT5G10800.1 GeneID:830947 KEGG:ath:AT5G10800
OMA:WAREDDE Uniprot:F4KIA8
Length = 947
Score = 2529 (895.3 bits), Expect = 7.5e-304, Sum P(2) = 7.5e-304
Identities = 505/720 (70%), Positives = 576/720 (80%)
Query: 58 TIDPND-KLK-EAEGEKSKDGVSVPKKGSRYVPSFIPPPLAAXXXXXXXXXXXXXXXXXX 115
TI+PND KLK +++GEKS+DG S+ KKGSRYVPSF+PPPLA+
Sbjct: 60 TINPNDNKLKPDSQGEKSRDGDSISKKGSRYVPSFLPPPLASKGKGPENKRDEERSKEME 119
Query: 116 XXXSRNIDNFMEELKHXXXXXXXXXXXXXHWRDGRHTESSAPSSRFDELPDDFDPSGKLP 175
+RNID+F+EELK + RD H + SSRFDELPD FDPSG+L
Sbjct: 120 KGKTRNIDHFVEELKREQEIRERRNQDRENSRD--HNSDNTSSSRFDELPDYFDPSGRL- 176
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DDGDPQTTNLYV NLS +VDENFLLRTFGRFGPIASVKIMWPRTEEE+RR+R+CGFV
Sbjct: 177 GSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFV 236
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGQMAIRSKEGATVIL 295
AFMNRADG+AAK++MQG++VYEYELKIGWGK V G MAIRSKEG +I
Sbjct: 237 AFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQALPAPPPGHMAIRSKEGCNLIF 296
Query: 296 SGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIM 355
S SGPP+ +VP+QNSELVLTPNVPDI VI PED HL+ +IDT+AL VLDGGCAFEQAIM
Sbjct: 297 SVTSGPPMNSVPNQNSELVLTPNVPDITVISPEDEHLKQIIDTMALNVLDGGCAFEQAIM 356
Query: 356 ERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPT 415
ERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEP+IMI GSGRWIPP LP
Sbjct: 357 ERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPYIMIAGSGRWIPPPLPA 416
Query: 416 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDN 475
++SPEH KES TYAAG+SR E E+TLTDSQRDEFEDMLRALTLERSQI+EAMGFALDN
Sbjct: 417 TRSPEHGKESRGTYAAGKSRCTEAEQTLTDSQRDEFEDMLRALTLERSQIREAMGFALDN 476
Query: 476 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
A+AAGE+VEVLTESLTLKET IPTKVARLMLVSD++HNSSA VKNASAYRTKFEATLPDI
Sbjct: 477 AEAAGEVVEVLTESLTLKETSIPTKVARLMLVSDIIHNSSARVKNASAYRTKFEATLPDI 536
Query: 536 MESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPF 595
MESFNDLY S+ GRITAEAL+ERVLKVLQVW+DWFLFSDAY+NGLRATFLRS N GVT F
Sbjct: 537 MESFNDLYHSVHGRITAEALRERVLKVLQVWADWFLFSDAYINGLRATFLRSRNFGVTSF 596
Query: 596 HSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLS 655
HSICGDAP+I+KK + D K NQD ALAMG+GAA +ELMN P+SELERRCRHNGLS
Sbjct: 597 HSICGDAPDIEKKGLIGNMNDADKINQDAALAMGEGAARQELMNRPISELERRCRHNGLS 656
Query: 656 LVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSG 715
L+GGREMMVARL+ L+DAEKQRGYE+ D+ + + Q S W+E N+E + M S
Sbjct: 657 LLGGREMMVARLVCLKDAEKQRGYEVVDE-NAKYRQGHST-----WEEVNIEPKRMKTS- 709
Query: 716 WNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQK 775
++ E +E + A ++P+ PQPE+KAF KKEK D +LP S+WA EDDE+DDEQK
Sbjct: 710 YDKVETEEPVDLA-STIPI------PQPELKAFVKKEKIDLILPTSRWAREDDETDDEQK 762
Score = 411 (149.7 bits), Expect = 7.5e-304, Sum P(2) = 7.5e-304
Identities = 96/205 (46%), Positives = 132/205 (64%)
Query: 694 SGRYSRG---WKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTK 750
+ +Y +G W+E N+E + M S ++ E +E + A ++P+ PQPE+KAF K
Sbjct: 686 NAKYRQGHSTWEEVNIEPKRMKTS-YDKVETEEPVDLA-STIPI------PQPELKAFVK 737
Query: 751 KEKNDPVLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDAS 810
KEK D +LP S+WA EDDE+DDEQK +NAG K D+ D D S
Sbjct: 738 KEKIDLILPTSRWAREDDETDDEQKKSYSSGS--------DNAGGITFKTDEEDLKADPS 789
Query: 811 IPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 870
+ VQP++ ++ EQRQKLR +E++LIEYRESLEE+G+K+SEEIE+KVAIHRKRLE++ GL+
Sbjct: 790 VRVQPENEIDVEQRQKLRHIEIALIEYRESLEEQGMKNSEEIERKVAIHRKRLEAD-GLS 848
Query: 871 DPNEDVSGNKRRDRRDEILDSRKRH 895
N+ V KR R D SRKR+
Sbjct: 849 G-NQRVLPEKREKREDSRDSSRKRN 872
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 870 (311.3 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 208/575 (36%), Positives = 298/575 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 232 EPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 286
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 287 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 346
Query: 259 ELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNS 311
E+K+GWGK+V + + + P P P+ P
Sbjct: 347 EMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKE 406
Query: 312 ELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELG 371
+ T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE
Sbjct: 407 DFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQ 466
Query: 372 SKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYA 430
+ H YY W+LYS QGD+ +WRTE F M W PP L P E+E+ +
Sbjct: 467 TPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFV 525
Query: 431 AGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 490
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL
Sbjct: 526 EEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESL 581
Query: 491 TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRI 550
++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 582 SILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL 641
Query: 551 TAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 642 QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 105 (42.0 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 34/156 (21%), Positives = 75/156 (48%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 821
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K+ + +++V +R
Sbjct: 822 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKAGQSFQEQVEHYRD 880
Query: 862 RL--ESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + + +++ + RD++D E L+SR +
Sbjct: 881 KLLQRKKKKKQEKEKELERERERDKKDKEKLESRSK 916
Score = 49 (22.3 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 35/189 (18%), Positives = 73/189 (38%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 824
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKA-----DDVDFTIDASI 811
+ SK++ + S++++ +G P KA + V+ D +
Sbjct: 825 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKAGQSFQEQVEHYRDKLL 883
Query: 812 PVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLAD 871
Q +E+ ++L R + +E LE R K +E ++ ++R
Sbjct: 884 --QRKKKKKQEKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPS 940
Query: 872 PNEDVSGNK 880
P+ SG +
Sbjct: 941 PSRSSSGRR 949
Score = 43 (20.2 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 823 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 878
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 928 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 986
Query: 879 NKRRDRRDEILDSRKR 894
+R R R
Sbjct: 987 KAKRSPSGSRTPKRSR 1002
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 871 (311.7 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 208/574 (36%), Positives = 297/574 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPSSRF-DELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDE 199
DG+ APS R + DD+ PGS D GDP TTNLY+GN++PQ++E
Sbjct: 232 EPPQSDSDGQRRSMDAPSRRNRSSVLDDY-----APGSHDVGDPSTTNLYLGNINPQMNE 286
Query: 200 NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259
L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +E
Sbjct: 287 EMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFE 346
Query: 260 LKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNSE 312
+K+GWGK+V + + + P P P+ P +
Sbjct: 347 MKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKED 406
Query: 313 LVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGS 372
T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE +
Sbjct: 407 FEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQT 466
Query: 373 KEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYAA 431
H YY W+LYS QGD+ +WRTE F M W PP L P E+E+ +
Sbjct: 467 PAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFVE 525
Query: 432 GRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLT 491
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL+
Sbjct: 526 EPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLS 581
Query: 492 LKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRIT 551
+ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 582 ILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQ 641
Query: 552 AEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 642 SENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
Score = 102 (41.0 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 761 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 820
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 821 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 879
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 880 KLLQR----EKEKELERERERDKKDKEKLESRSK 909
Score = 50 (22.7 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 765 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 823
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
+ SK++ + S++++ +G P K + + D
Sbjct: 824 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 879
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 880 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 938
Query: 877 SGNK 880
SG +
Sbjct: 939 SGRR 942
Score = 43 (20.2 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 823 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 878
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 921 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 979
Query: 879 NKRRDRRDEILDSRKR 894
+R R R
Sbjct: 980 KAKRSPSGSRTPKRSR 995
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 870 (311.3 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 208/575 (36%), Positives = 298/575 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 232 EPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 286
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 287 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 346
Query: 259 ELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNS 311
E+K+GWGK+V + + + P P P+ P
Sbjct: 347 EMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKE 406
Query: 312 ELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELG 371
+ T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE
Sbjct: 407 DFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQ 466
Query: 372 SKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYA 430
+ H YY W+LYS QGD+ +WRTE F M W PP L P E+E+ +
Sbjct: 467 TPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFV 525
Query: 431 AGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 490
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL
Sbjct: 526 EEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESL 581
Query: 491 TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRI 550
++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 582 SILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL 641
Query: 551 TAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 642 QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 102 (41.0 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 821
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 822 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 880
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 881 KLLQR----EKEKELERERERDKKDKEKLESRSK 910
Score = 50 (22.7 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 824
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
+ SK++ + S++++ +G P K + + D
Sbjct: 825 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 880
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 881 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 939
Query: 877 SGNK 880
SG +
Sbjct: 940 SGRR 943
Score = 43 (20.2 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 823 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 878
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 922 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 980
Query: 879 NKRRDRRDEILDSRKR 894
+R R R
Sbjct: 981 KAKRSPSGSRTPKRSR 996
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 870 (311.3 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 208/575 (36%), Positives = 298/575 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 232 EPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 286
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 287 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 346
Query: 259 ELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNS 311
E+K+GWGK+V + + + P P P+ P
Sbjct: 347 EMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKE 406
Query: 312 ELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELG 371
+ T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE
Sbjct: 407 DFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQ 466
Query: 372 SKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYA 430
+ H YY W+LYS QGD+ +WRTE F M W PP L P E+E+ +
Sbjct: 467 TPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFV 525
Query: 431 AGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 490
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL
Sbjct: 526 EEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESL 581
Query: 491 TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRI 550
++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 582 SILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL 641
Query: 551 TAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 642 QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 102 (41.0 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 821
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 822 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 880
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 881 KLLQR----EKEKELERERERDKKDKEKLESRSK 910
Score = 50 (22.7 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 824
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
+ SK++ + S++++ +G P K + + D
Sbjct: 825 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 880
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 881 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 939
Query: 877 SGNK 880
SG +
Sbjct: 940 SGRR 943
Score = 43 (20.2 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 823 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 878
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 922 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 980
Query: 879 NKRRDRRDEILDSRKR 894
+R R R
Sbjct: 981 KAKRSPSGSRTPKRSR 996
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 864 (309.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 207/575 (36%), Positives = 296/575 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ E + ++ K + K SR+ PP
Sbjct: 72 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKDEHETDEKRGK----IYKPSSRFADQKNPP 127
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 128 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 187
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ PS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 188 EPPQSDSDGQRRSMDVPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 242
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 243 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 302
Query: 259 ELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNS 311
E+K+GWGK+V + + + P P P+ P
Sbjct: 303 EMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKE 362
Query: 312 ELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELG 371
+ T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE
Sbjct: 363 DFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQ 422
Query: 372 SKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYA 430
+ H YY W+LYS QGD+ +WRTE F M W PP L P E+E+ +
Sbjct: 423 TPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFV 481
Query: 431 AGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 490
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL
Sbjct: 482 EEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESL 537
Query: 491 TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRI 550
++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 538 SILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL 597
Query: 551 TAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 598 QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 632
Score = 102 (41.0 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 35/154 (22%), Positives = 73/154 (47%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ V
Sbjct: 718 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPV 777
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 778 REEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 836
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 837 KLLQR----EKEKELERERERDKKDKEKLESRSK 866
Score = 48 (22.0 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 31/184 (16%), Positives = 69/184 (37%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ + +
Sbjct: 722 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREE- 780
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
+ SK++ + S++++ +G P K + + D
Sbjct: 781 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 836
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 837 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 895
Query: 877 SGNK 880
SG +
Sbjct: 896 SGRR 899
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 864 (309.2 bits), Expect = 6.1e-95, Sum P(2) = 6.1e-95
Identities = 207/575 (36%), Positives = 296/575 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKDEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ PS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 232 EPPQSDSDGQRRSMDVPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 286
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 287 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 346
Query: 259 ELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNS 311
E+K+GWGK+V + + + P P P+ P
Sbjct: 347 EMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKE 406
Query: 312 ELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELG 371
+ T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE
Sbjct: 407 DFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQ 466
Query: 372 SKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYA 430
+ H YY W+LYS QGD+ +WRTE F M W PP L P E+E+ +
Sbjct: 467 TPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFV 525
Query: 431 AGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 490
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL
Sbjct: 526 EEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESL 581
Query: 491 TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRI 550
++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 582 SILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL 641
Query: 551 TAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 642 QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 100 (40.3 bits), Expect = 6.1e-95, Sum P(2) = 6.1e-95
Identities = 35/154 (22%), Positives = 72/154 (46%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ V
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPV 821
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 822 REEATES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 880
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 881 KLLQR----EKEKELERERERDKKDKEKLESRSK 910
Score = 46 (21.3 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 31/184 (16%), Positives = 68/184 (36%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ + +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREEA 825
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
SK++ + S++++ +G P K + + D
Sbjct: 826 T--ESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 880
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 881 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 939
Query: 877 SGNK 880
SG +
Sbjct: 940 SGRR 943
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 860 (307.8 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 206/574 (35%), Positives = 296/574 (51%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPSSRF-DELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDE 199
DG+ APS R + DD+ PGS D GDP TTNLY+GN++PQ++E
Sbjct: 232 EPPQSDSDGQRRSMDAPSRRNRSSVLDDY-----APGSHDVGDPSTTNLYLGNINPQMNE 286
Query: 200 NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259
L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +E
Sbjct: 287 EMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFE 346
Query: 260 LKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNSE 312
+K+GWGK+V + + + P P P+ P +
Sbjct: 347 MKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKED 406
Query: 313 LVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGS 372
T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE +
Sbjct: 407 FEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQT 466
Query: 373 KEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYAA 431
H YY W+LYS Q ++ +WRTE F M W PP L P E+E+ +
Sbjct: 467 PAHVYYRWKLYSILQANSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET-EAFVE 525
Query: 432 GRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLT 491
S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL+
Sbjct: 526 EPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLS 581
Query: 492 LKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRIT 551
+ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 582 ILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQ 641
Query: 552 AEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 642 SENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
Score = 102 (41.0 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 761 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 820
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 821 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 879
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 880 KLLQR----EKEKELERERERDKKDKEKLESRSK 909
Score = 50 (22.7 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 765 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 823
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
+ SK++ + S++++ +G P K + + D
Sbjct: 824 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 879
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 880 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 938
Query: 877 SGNK 880
SG +
Sbjct: 939 SGRR 942
Score = 43 (20.2 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 823 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 878
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 921 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 979
Query: 879 NKRRDRRDEILDSRKR 894
+R R R
Sbjct: 980 KAKRSPSGSRTPKRSR 995
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 858 (307.1 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
Identities = 208/575 (36%), Positives = 293/575 (50%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSK----DGVSVPKKGSRYVPS 89
+Y EF+ +F+G G K FVRGG ++ + + E + ++ K +K PS
Sbjct: 73 IYEEFLAAFEGSDGNKVKTFVRGGIVNASKEEHETDEKRGKIYKPSSRFSDQKNQPSQPS 132
Query: 90 FIPPPLAAXXXXXXXXXXXXXXXXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
PP N++ F EELK H
Sbjct: 133 NEKPP----SLLMIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 188
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 189 EPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 243
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 244 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 303
Query: 259 ELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATVILSGP----SGP--PVTTVPSQNS 311
E+K+GWGK+V + + + P P P+ P
Sbjct: 304 EMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKE 363
Query: 312 ELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELG 371
+ T + + V+ P +R+L +I + +V+ G FE IM R NP+F FLFE
Sbjct: 364 DFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQ 423
Query: 372 SKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-PTSKSPEHEKESGTTYA 430
+ H YY W+LYS QGD +WRTE F M W PP L P E+E+
Sbjct: 424 TPAHVYYRWKLYSILQGDAPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVE 483
Query: 431 AGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 490
+ A L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +TESL
Sbjct: 484 EPNKKGA-----LKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESL 538
Query: 491 TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRI 550
++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I G +
Sbjct: 539 SILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHL 598
Query: 551 TAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 599 QSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 633
Score = 100 (40.3 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
Identities = 34/154 (22%), Positives = 72/154 (46%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 719 EAVDESELEAQAVTTSKWELFDQHEESEEEEIPNQEEESEDEEDTQSSKSEEQHMYSNPI 778
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 779 KEEMPESKSSVKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 838
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E DSR +
Sbjct: 839 KLLQR----EKEKELERERERDKKDKEKSDSRSK 868
Score = 60 (26.2 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 31/186 (16%), Positives = 78/186 (41%)
Query: 703 ETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKN---DPV-- 757
E+ +EA+++ S W +++ E+ + +P + + + ++ +E++ +P+
Sbjct: 723 ESELEAQAVTTSKWELFDQHEESEEE--EIPNQEEESEDEEDTQSSKSEEQHMYSNPIKE 780
Query: 758 -LPASKWALEDDESDDEQKXXXXXXXXXXXXXXXE-NAGDGPSKADDVDFTIDASIPVQP 815
+P SK +++ E +E++ E +G P K + +
Sbjct: 781 EMPESKSSVKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYR 837
Query: 816 DSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNED 875
D + E+ ++L R + +E + R K +E E+ ++R + + +
Sbjct: 838 DKLLQREKEKELERERERDKKDKEKSDSRS-KDKKEKEECTPTRKERRKRRHSNSPSPSR 896
Query: 876 VSGNKR 881
SG++R
Sbjct: 897 SSGSRR 902
Score = 42 (19.8 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 19/73 (26%), Positives = 27/73 (36%)
Query: 822 EQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNKR 881
++R+K RR S R S R S + E+ H++ S D DVS +
Sbjct: 881 KERRK-RRHSNSPSPSRSSGSRRAKSPSPKSERSERSHKESSRSRSSHKDSPRDVSKKGK 939
Query: 882 RDRRDEILDSRKR 894
R R R
Sbjct: 940 RSPSGSRTPKRSR 952
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 830 (297.2 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
Identities = 218/613 (35%), Positives = 299/613 (48%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG N +EA ++ K + PK SF+P
Sbjct: 57 IYEEFLAAFEGGEGK-VKTFVRGGIA--NATKEEAAADEKKGKLYKPKSRIVEAKSFLP- 112
Query: 94 PLAAXXXXXXXXXXXXXXXXXXXXXSRNIDNFMEELKHXXXXXXXXXXXX---XHWRDGR 150
L N++ F EELK +
Sbjct: 113 -LETPQQFLPIDKRNASKKGDKEKKKSNLELFKEELKQIQEERDERHRLKGRVSRFEPLP 171
Query: 151 HTE---SSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFG 207
TE SS SSR + D S PGS D GDP TTNLY+GN++PQ++E L + FG
Sbjct: 172 TTEGRRSSDGSSRRNRPSSVLDDSA--PGSHDVGDPTTTNLYLGNINPQMNEEMLCQEFG 229
Query: 208 RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
R+GP+ASVKIMWPRT+EER R+RNCGFVAFM R D + A + G ++ +E+K+GWGK
Sbjct: 230 RYGPLASVKIMWPRTDEERARERNCGFVAFMTRRDAERALKHLNGKMIMNFEMKLGWGKG 289
Query: 268 VXXX--------XXXXXXXXXGQMAIRSKEGATVILSGPSG--PPVTTVPSQNSELVLTP 317
V + L P+ PP P E T
Sbjct: 290 VPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPKERLKNPNAAMPPP---PKCKEEFEKTL 346
Query: 318 NVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTY 377
+ + V+ P +R+L +I + +V+ G FE IM R NPL+ FLFE S H Y
Sbjct: 347 SQAIVKVVIPTERNLLSLIHRMIEFVVREGPMFEAMIMNREINNPLYRFLFENQSPAHVY 406
Query: 378 YVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPAL-P----TSKSPEHEKESGTTYAAG 432
Y W+LY+ QG++ +W+TE F M W PP L P T + EHE +
Sbjct: 407 YRWKLYTILQGESPTKWKTEDFRMFKNGSLWRPPPLNPYLHGTPEDEEHEDDDDEEICKK 466
Query: 433 RSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTL 492
S L D +RD+ E++LR LT +S I M F L +ADAA EIVE + ESL++
Sbjct: 467 GS--------LKDEERDKLEELLRGLTPRKSDIAGGMFFCLTHADAAEEIVECIAESLSI 518
Query: 493 KETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITA 552
+TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N Y++I G + +
Sbjct: 519 LKTPLPKKIARLYLVSDVLYNSSAKVTNASYYRKFFETKLCQIFSDLNATYKTIQGHLQS 578
Query: 553 EALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSE 612
E K+RV+ + W +W ++ D ++ L+ FL G + P PE+ +K
Sbjct: 579 ENFKQRVMSCFRAWEEWAVYPDPFLIKLQNIFL--GLVSLDPEKEPEELVPELPEKVEDI 636
Query: 613 DTCDLSKTNQDTA 625
D + + D A
Sbjct: 637 DGAPIVEEELDGA 649
Score = 115 (45.5 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
Identities = 32/130 (24%), Positives = 63/130 (48%)
Query: 761 SKWALED-DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGM 819
SKW + D E ++ K +A D S ++ V D + S
Sbjct: 718 SKWEIFDLPEESEKSKSSTKSEAEGKNSHKSSSAADQQSYSNPVREEYD--LKSAKFSET 775
Query: 820 NEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVS 877
+EE+R KLR +E+ ++++++ LE +R KS + I+++V ++R +L + +D
Sbjct: 776 SEEKRAKLREIELKVMKFQDELESGKRPKKSGQSIQEQVELYRDKLLQREKEKETEKDKE 835
Query: 878 GNKRRDRRDE 887
K ++R+D+
Sbjct: 836 KEKEKERKDK 845
Score = 47 (21.6 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 816 DSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESE-----YGLA 870
+SG ++ + + +V L YR+ L +R + E +K+ ++R + E +
Sbjct: 798 ESGKRPKKSGQSIQEQVEL--YRDKLLQREKEKETEKDKEKEKEKERKDKEKSDVFHKEK 855
Query: 871 DPNEDVSGNKRRDRR 885
D +E G K + RR
Sbjct: 856 DKDESTPGRKEKKRR 870
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 761 (272.9 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 194/584 (33%), Positives = 283/584 (48%)
Query: 35 YAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPPP 94
+ EFVE+FQ P SK +V+ GT D + +E + EK K V K + +
Sbjct: 61 FKEFVETFQDAPTPSSKVWVKAGTYDAGSR-REDKSEKGKLYKPVSKLMEKSSSDKVED- 118
Query: 95 LAAXXXXXXXXXXXXXXXXXXXXXSRNIDNFMEELKHXXXXXXXXXX----XXXHWRDGR 150
A N++ F EEL+ H +
Sbjct: 119 YAKTLASDLKKDSGPLKKKNQEKKKSNLELFKEELRQIQEEREERHKYKHMASSHSAPAQ 178
Query: 151 HTESSA---PSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFG 207
+SA PSS + S K GSFD GDP TTNLY+GNL+P++ E L+ FG
Sbjct: 179 QPAASAAPVPSSSVSTTSQN-SSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFG 237
Query: 208 RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
R+GP+AS+KIMWPR+EEE++R RNCGFVA+M+R D + A + G + YE+++GWGK+
Sbjct: 238 RYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGKT 297
Query: 268 VXXXXXXXXX-XXXGQMAIRSKEGATVILSGPSGPPVTTVPS-----------QNSELVL 315
V +M + + P +P +N E +L
Sbjct: 298 VPIMNTPIFTPQALLEMTLPPPPSGLPFNAQPPPSEADVLPKKNYKEFNQEDKENMERIL 357
Query: 316 TPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEH 375
V + + P ++ + +VI + +V+ G FE IM R NPLF FLF+ S H
Sbjct: 358 AKCVVKVHI--PTEKAVLNVIHRMIEFVIREGPMFEALIMIREMENPLFAFLFDNESPAH 415
Query: 376 TYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALP--TSKSPEHEKESGTTYAAGR 433
YY W+L+S QGDT WR E F M W PP T P+
Sbjct: 416 IYYRWKLFSLLQGDTPNEWREEEFRMFKNGPVWKPPIANFYTQGMPDE-------LVVDP 468
Query: 434 SRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLK 493
+ L+++QR+ ED++R LT ER++I +AM F +++ADAA EI E + ESL+
Sbjct: 469 DAPVVHKGALSNAQRNRLEDLIRHLTPERARIGDAMIFCIEHADAADEICECIAESLSNI 528
Query: 494 ETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAE 553
T K+ARL L+SD+LHN + V NAS +R E L DI ++ ++ Y +I R+ AE
Sbjct: 529 NTLASKKIARLYLISDILHNCTVKVANASFFRKSVEKQLLDIFDNLHNYYLNIESRLKAE 588
Query: 554 ALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHS 597
K RV V++ W +W ++ ++ L A FL G V P ++
Sbjct: 589 GFKSRVCNVIRTWEEWTIYPKDFMAQLTAKFL--GKPYVKPVNN 630
Score = 72 (30.4 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 821 EEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRKRL 863
+E RQKLR +E I+Y++ LE +R ++ + ++V RKRL
Sbjct: 781 DEMRQKLRDIESKAIQYQDELESGKRRLEPGWSVPEQVEQFRKRL 825
>ZFIN|ZDB-GENE-070410-141 [details] [associations]
symbol:zgc:163098 "zgc:163098" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070410-141 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 GeneTree:ENSGT00390000010687
EMBL:BX927261 IPI:IPI00997649 Ensembl:ENSDART00000122919
ArrayExpress:F1QSP9 Bgee:F1QSP9 Uniprot:F1QSP9
Length = 942
Score = 765 (274.4 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 229/721 (31%), Positives = 336/721 (46%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPS--FI 91
++ EF+ +F + G K FVRGG ++ + + AE +KSK Y PS F
Sbjct: 52 VFEEFLAAFDTNDKSGVKTFVRGGIVNATKEEEAAEVKKSK----------LYRPSAKFS 101
Query: 92 PPPLAAXXXXXXXXXXXXXXXXXXXXXSRNIDNFMEELKHXXXXXXXXXXXXXHWRDGRH 151
P N++ F EELK R+ R+
Sbjct: 102 APLQNTSPVHHAEVKKAVAKKKVEEKKKSNLELFKEELKQIQEE-----------REERY 150
Query: 152 TESSAPSSRFDELPDDFDPSGKLPGSF--DDGD--PQTTNLYVGNLSPQVDENFLLRTFG 207
S D +P + F DD P TTNLY+G ++P++ E L + FG
Sbjct: 151 KRKKGDSGAV--FLGDLEPLTRRSSKFVFDDDPAVPNTTNLYIGCINPKMTEEMLCKEFG 208
Query: 208 RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
++GP+ASVKIMWPRTEEER R N GFVAFM R D + A + G V +E+K+GWGK+
Sbjct: 209 KYGPLASVKIMWPRTEEERTRVTNRGFVAFMTRKDAERALAALDGKTVMGFEMKLGWGKA 268
Query: 268 VXXXXXXXXXXXXGQMAIRSKEGATVILSGPSGPPVTTVP--------------SQNSEL 313
V G + T PSG P P SQ+
Sbjct: 269 VRIPPQPLYTPI-GVLK-------TTAPPPPSGLPFNAQPRDRFRNDFTKPRSRSQDDFY 320
Query: 314 VLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSK 373
+VIPPE R+L +I + +V+ G FE IM R + NP F FLF+ S+
Sbjct: 321 KTLSEAVVTVVIPPE-RNLLGLIHRMIEFVVREGPMFEAMIMNREKNNPDFRFLFDNKSQ 379
Query: 374 EHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGR 433
EH YY W+LYS QG+ WRT F M G W PP L + E E A+
Sbjct: 380 EHVYYRWKLYSILQGENPNNWRTSSFRMFRGGSLWKPPLLNPYLHGDEEPEE----ASFP 435
Query: 434 SRRAEPER-TLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTL 492
S EP++ L R++ E +LR LT R +I +AM F L+ A+AA EIV +TESL++
Sbjct: 436 SPEEEPKKGQLKSEHREKLEVLLRGLTPRRDEIGDAMLFCLERAEAAEEIVSCITESLSI 495
Query: 493 KETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITA 552
TP+ K+ARL L+SD+L+NS A V NAS YR FE LP+I ++ YR+I R+ A
Sbjct: 496 AHTPLQKKIARLYLISDILYNSCAKVANASYYRKFFETKLPEIFGDISEAYRNIQARLQA 555
Query: 553 EALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSE 612
E K+R++ + W DW ++ D+++ L+ FL G P ++P++D
Sbjct: 556 EQFKQRIMGCFRAWEDWAVYPDSFLIQLQNIFLGLIKPGEEP------ESPDLD--GAPL 607
Query: 613 DTCDLSKTNQD-TALAMGKGAAI----KELMNLPLSELERRCRHNGLSLVGGREMMVARL 667
D L + D T L G+ + + +P+ +++ N + + G
Sbjct: 608 DGVPLDRGEIDGTPLDDLDGSPLTWDPSAIDGVPVDDIDGVPLGNSVDDIDGVPFDEGSD 667
Query: 668 LSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQ 727
+L + +E DD +S+ + S+ + R W +++ E S GL +G + D +
Sbjct: 668 KTLPTVALSK-WEKVDDSESSGTISALTAFHR-WNDSDNEVNSGGLKENSG-DSDTSSDE 724
Query: 728 A 728
A
Sbjct: 725 A 725
Score = 48 (22.0 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 671 EDAEKQRGYELD--DDLKSAHSQSSSGRYSRGWKETNME 707
ED EK RG D D +S S+ S R+ +K M+
Sbjct: 854 EDREKSRGRSRDKEDRRESIKSRKYSCRFQGRFKSNTMQ 892
>UNIPROTKB|C9JB80 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
EMBL:AC018450 EMBL:AC026304 IPI:IPI00790699 HGNC:HGNC:30855
HOGENOM:HOG000286037 ChiTaRS:u2surp ProteinModelPortal:C9JB80
SMR:C9JB80 STRING:C9JB80 PRIDE:C9JB80 Ensembl:ENST00000480029
ArrayExpress:C9JB80 Bgee:C9JB80 Uniprot:C9JB80
Length = 488
Score = 495 (179.3 bits), Expect = 6.0e-55, Sum P(2) = 6.0e-55
Identities = 105/245 (42%), Positives = 146/245 (59%)
Query: 342 YVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIM 401
+V+ G FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 4 FVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRM 63
Query: 402 ITGSGRWIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTL 460
W PP L P E+E+ + S++ L + QRD+ E++LR LT
Sbjct: 64 FKNGSFWRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTP 118
Query: 461 ERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKN 520
++ I +AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V N
Sbjct: 119 RKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVAN 178
Query: 521 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGL 580
AS YR FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L
Sbjct: 179 ASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKL 238
Query: 581 RATFL 585
+ FL
Sbjct: 239 QNIFL 243
Score = 102 (41.0 bits), Expect = 6.0e-55, Sum P(2) = 6.0e-55
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 746 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 803
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 329 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 388
Query: 804 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 861
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 389 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 447
Query: 862 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 894
+L + +++ + RD++D E L+SR +
Sbjct: 448 KLLQR----EKEKELERERERDKKDKEKLESRSK 477
Score = 41 (19.5 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 28/157 (17%), Positives = 59/157 (37%)
Query: 703 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 756
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 333 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 391
Query: 757 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 816
+ SK++ + S++++ +G P K + + D
Sbjct: 392 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 447
Query: 817 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIE 853
+ E+ ++L R + +E LE R E+ E
Sbjct: 448 KLLQREKEKELERERERDKKDKEKLESRSKDKKEKDE 484
>WB|WBGene00015581 [details] [associations]
symbol:C07H6.4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0009792
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
HSSP:P19339 InterPro:IPR008942 SUPFAM:SSF48464 EMBL:FO080423
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
eggNOG:NOG307351 KO:K12842 GeneTree:ENSGT00390000010687
RefSeq:NP_498648.1 ProteinModelPortal:Q95YF1 SMR:Q95YF1
STRING:Q95YF1 PaxDb:Q95YF1 EnsemblMetazoa:C07H6.4 GeneID:176063
KEGG:cel:CELE_C07H6.4 UCSC:C07H6.4 CTD:176063 WormBase:C07H6.4
HOGENOM:HOG000018806 InParanoid:Q95YF1 OMA:AEGFKTR NextBio:890952
Uniprot:Q95YF1
Length = 933
Score = 220 (82.5 bits), Expect = 6.3e-51, Sum P(4) = 6.3e-51
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 178 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAF 237
FDD DP TTN+YV N+ V E+ LL TFG FGP+A++KI++PR+EEERRR C FVAF
Sbjct: 193 FDD-DPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAF 251
Query: 238 MNRADGQAAKDEMQGVVVYEYELKIGWGKSV 268
M+RAD E++ ++V ++ + + V
Sbjct: 252 MSRADVDRFMAEVRVIIVRNEPIRFAFARPV 282
Score = 217 (81.4 bits), Expect = 6.3e-51, Sum P(4) = 6.3e-51
Identities = 59/204 (28%), Positives = 109/204 (53%)
Query: 416 SKSPEHEKESGTTYAAGRSRRAEPERT----LTDSQRDEFEDMLRALTLERSQIKEAMGF 471
S + + E++ R RR + E+ ++D +RD+ E ++R LT E++ I M +
Sbjct: 491 SDAEKEERKMRREEEKERKRREKNEKKRNNRMSDKRRDKLETLIRELTPEKTSIAATMVW 550
Query: 472 ALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNS-SAPVKNASAYRTKFEA 530
+ NA A EI E + +SLT+++ P+ K++RL L++D+L N V++ YR+ FEA
Sbjct: 551 CIQNAKYAAEICECVYDSLTIEDIPLYKKISRLYLINDILSNCVQRNVRDVFLYRSHFEA 610
Query: 531 TLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLF-SDAYVNGLRATFLRSGN 589
L I + YR+I RI E K+RV+ V + + + ++ +D ++ + FL G
Sbjct: 611 LLEKIFVAVGKAYRAIPSRIKQEQFKQRVMCVFRNFEEMAVYPTDKLIHN-QNVFL--GL 667
Query: 590 SGVTPFHSICGDAPEIDKKNNSED 613
+ S D +++++ + ED
Sbjct: 668 IEIGKEKSEERDNQKLEEEEDEED 691
Score = 214 (80.4 bits), Expect = 6.3e-51, Sum P(4) = 6.3e-51
Identities = 46/118 (38%), Positives = 65/118 (55%)
Query: 301 PPVTTVPSQN-------SELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQA 353
PP+ +P++ +EL+ + +V+PP DR L V+D +A+YV+ G FE
Sbjct: 329 PPMHALPTKGQYGYEDFTELIRNSQIR--VVVPP-DRKLVRVMDRMAVYVVTEGPQFEAM 385
Query: 354 IMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP 411
I NP+F FL++ S H YY WR+YS QGDT++ WR PF M WIPP
Sbjct: 386 ICAEEFQNPMFQFLWDNTSALHVYYRWRIYSLLQGDTIEEWRRTPFRMFENGSWWIPP 443
Score = 65 (27.9 bits), Expect = 6.3e-51, Sum P(4) = 6.3e-51
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 815 PDSG--MNEEQRQKLRRLEVSLI--EYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 870
PD+ ++E +R ++ ++E +L E ++S +E+ + SE+ EKK RKR S
Sbjct: 836 PDAKRKVDEFRRCEMEKVEKALRSGESKKS-DEKSERKSEKKEKKRDKERKRSRSRSRDR 894
Query: 871 DPNE---DVSGNKRRDR-RDEILDSRKR 894
D + D S ++ RDR RD D R R
Sbjct: 895 DRDRSRRDRSRDRSRDRDRDRDRDRRDR 922
Score = 50 (22.7 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 839 ESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNKRRDRRDEILDS 891
ES + R +E+ E+K+ R+ E E + NE N+ D+R + L++
Sbjct: 483 ESSKNRRNSDAEKEERKM---RREEEKERKRREKNEKKRNNRMSDKRRDKLET 532
Score = 45 (20.9 bits), Expect = 5.9e-31, Sum P(3) = 5.9e-31
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 832 VSLIEY-RESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 876
+ LIE +E EER + EE E + + LE E + + NE +
Sbjct: 665 LGLIEIGKEKSEERDNQKLEEEEDEEDLDGVPLEEEKSVQNMNESL 710
Score = 43 (20.2 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 416 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFED 453
S+ E +++ + RSR + +R+ D RD D
Sbjct: 873 SEKKEKKRDKERKRSRSRSRDRDRDRSRRDRSRDRSRD 910
Score = 37 (18.1 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 873 NEDVSGNKRRDRRDEILDSRKR 894
N D +R+ RR+E + ++R
Sbjct: 490 NSDAEKEERKMRREEEKERKRR 511
>DICTYBASE|DDB_G0281687 [details] [associations]
symbol:DDB_G0281687 "U2 snRNP-associated SURP
motif-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0281687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG307351 RefSeq:XP_640578.4
ProteinModelPortal:Q54TL3 EnsemblProtists:DDB0252764 GeneID:8623186
KEGG:ddi:DDB_G0281687 OMA:GINYCAI Uniprot:Q54TL3
Length = 951
Score = 487 (176.5 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 127/412 (30%), Positives = 210/412 (50%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN-CGFVAFMNRADGQ 244
T L++G LS + +E + F +G I S+KI+ P+ E++R+R N C V + D
Sbjct: 382 TTLFLGTLSVESNEQVIDELFSTYGIINSIKIITPKNEDDRKRGINYCAIVTYQFPRDAH 441
Query: 245 AAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGQMAIRSKEGATVILSGPSGPPVT 304
A ++ G + EL+IGW K + + G
Sbjct: 442 NAMKDLTGKKLLGRELRIGWAKIQVKQPRNNEINNFNNYNNNNN-----FFNNSHG---- 492
Query: 305 TVPSQNSELVLTPNVP-DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPL 363
+ ++N+ N P I V P++ ++ +ID LA YV G FE+ I ER N
Sbjct: 493 -MGNKNN------NGPIKIQVQIPQNLFIKSIIDNLAYYVSKEGYPFEKLIQEREYSNMN 545
Query: 364 FNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEK 423
F FLF+ S ++ YY W++YS GDT W+ +P MI +IPP + + + ++
Sbjct: 546 FQFLFDHQSDDYYYYSWKVYSLINGDTKTNWKLKPIEMIKDYLIFIPPTIDDQQLQQQQQ 605
Query: 424 ESGTTYAAGRSRRAE----PERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAA 479
+ + S A ++ L S R +FE+ ++ LT +R ++ E M ++DN+D +
Sbjct: 606 QQQQPHIQNPSTIASNSNIQQQPLPISLRVKFEEYVKNLTAQREKVCELMVMSIDNSDYS 665
Query: 480 GEIVEVLTES-------LTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATL 532
+IV+++ S L KE+ I +K+++L L+SD+LHN + VKN S+YR FE L
Sbjct: 666 SDIVDIIVGSFFDSISNLNGKES-INSKISKLYLISDILHNCTVNVKNVSSYRGLFENKL 724
Query: 533 PDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATF 584
+ ++ + YRSI GR++A+ KE++ KVL W L+S +++ GLR TF
Sbjct: 725 ALVFQNLSSTYRSIGGRVSAQNFKEKITKVLNSWDKSSLYSKSFLLGLRFTF 776
Score = 40 (19.1 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 58 TIDP-NDKLKEAEGEKSKDGVSVPKKGSRYVPS 89
TID D+ K+ + E+ KD S S + S
Sbjct: 337 TIDTLKDEFKQIQEEREKDKKSTTSSSSTSLSS 369
Score = 38 (18.4 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 7/38 (18%), Positives = 21/38 (55%)
Query: 660 REMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRY 697
R ++ S + + +R +E+ +++ +++ Q+ RY
Sbjct: 913 RATLIKAAASQKISSLKRDFEVGNNINNSNRQTKQQRY 950
Score = 38 (18.4 bits), Expect = 3.5e-42, Sum P(3) = 3.5e-42
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKD 75
+Y +F+ + K FV+GGT +D + + + + +
Sbjct: 93 VYNDFLSEHENKPTDTPK-FVKGGTFILSDDINDDDDNNNNN 133
>UNIPROTKB|E7EW00 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp IPI:IPI00979562 ProteinModelPortal:E7EW00 SMR:E7EW00
Ensembl:ENST00000488497 UCSC:uc011bnj.1 ArrayExpress:E7EW00
Bgee:E7EW00 Uniprot:E7EW00
Length = 425
Score = 398 (145.2 bits), Expect = 4.2e-36, P = 4.2e-36
Identities = 93/250 (37%), Positives = 130/250 (52%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 116 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 171
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 172 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 231
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 232 EPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 286
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 287 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 346
Query: 259 ELKIGWGKSV 268
E+K+GWGK+V
Sbjct: 347 EMKLGWGKAV 356
>UNIPROTKB|H0Y8D9 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp Ensembl:ENST00000463563 Bgee:H0Y8D9 Uniprot:H0Y8D9
Length = 439
Score = 398 (145.2 bits), Expect = 4.2e-36, P = 4.2e-36
Identities = 93/250 (37%), Positives = 130/250 (52%)
Query: 34 LYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFIPP 93
+Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+ PP
Sbjct: 118 IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKNPP 173
Query: 94 PLAAXXXXXXXXXXXXXX----XXXXXXXSRNIDNFMEELK---------HXXXXXXXXX 140
++ N++ F EELK H
Sbjct: 174 NQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF 233
Query: 141 XXXXHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVD 198
DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ++
Sbjct: 234 EPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQMN 288
Query: 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258
E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++ +
Sbjct: 289 EEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSF 348
Query: 259 ELKIGWGKSV 268
E+K+GWGK+V
Sbjct: 349 EMKLGWGKAV 358
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 185 (70.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 60/258 (23%), Positives = 114/258 (44%)
Query: 326 PPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385
PP+ + +ID LA YV G FE E+ R NPLF+FL + S + YY W+L++
Sbjct: 432 PPQSPQEQQIIDKLAEYVARTGPRFETFTFEKQRNNPLFSFL-KPRSPANDYYKWKLWTI 490
Query: 386 AQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTD 445
DT + S + + P+ + + + P L +
Sbjct: 491 RNPDTHSSNNDTNNETQSPSNQQENQQQQQQQQPQQPPQQENQQQ--QQQINYPSSFLNE 548
Query: 446 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLM 505
++ EF+D+L LT + + + + + + + EI+ ++ + K+ L
Sbjct: 549 NEVKEFKDILEKLTPSKPSVTNCKNWIMSHTENSLEIISIIVVNFQTISLTFAQKLNILH 608
Query: 506 LVSDVLHNSSAPVKNASAYRTK-FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQ 564
+++D LHNS + + + + F ++ D + F + S TG + +E+VLKVL
Sbjct: 609 VLNDCLHNSVTKRSSPNDWMSDDFARSIKDYLP-F--IIGS-TGSGESPDNQEKVLKVLS 664
Query: 565 VWSDWFLFSDAYVNGLRA 582
+W + + ++ LR+
Sbjct: 665 IWDNQKFYPKDFIESLRS 682
Score = 92 (37.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T NL++GN++ V L + F +FG + +++I+ R C FV F
Sbjct: 275 TKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRIL---------HGRGCAFVNFFTVESAA 325
Query: 245 AAKDEMQGVVVYEYELKIGWGK 266
AA++ + G +V LKI + K
Sbjct: 326 AARNGLNGTMVCGMPLKINFRK 347
Score = 85 (35.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 165 PDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE 224
P+ P + G+ +P T ++ GN++P+ E + F +FG + ++KI+ P
Sbjct: 157 PNQMAPHYQNKGAGGQLEP-TKIVWAGNINPESTEEEVRHLFSQFGYLQAIKII-PN--- 211
Query: 225 ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 266
+ C F+ F + A+ + G + LK+G+GK
Sbjct: 212 -----KQCAFITFADVNCAIQAQFNLNGTIFRGLPLKLGFGK 248
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 127 (49.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238
DDG P+T LYVGNLS V E +L+ F + GP S K++ T + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----C-FVEFY 56
Query: 239 NRADGQAAKDEMQGVVVYEYELKIGW 264
D AA M G + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 147 (56.8 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DGD T ++VG L +V + L ++F +FG + SVKI P + CGFV
Sbjct: 285 GSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PAG-------KGCGFV 335
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F +R+ Q A ++ G ++ + +++ WG+S
Sbjct: 336 QFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS 367
>UNIPROTKB|F1NDX1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
EMBL:AADN02061998 IPI:IPI00821225 Ensembl:ENSGALT00000006062
ArrayExpress:F1NDX1 Uniprot:F1NDX1
Length = 398
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + YY ++L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLF--GGDFYGYYKYKL 60
Score = 63 (27.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 32/173 (18%), Positives = 76/173 (43%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 126 RQEQVTSAVALAIEQQMQKVLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 185
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T + ++ + L++DVLH+ K A R A +
Sbjct: 186 PAHCELMAGHLRNRITAEGAHFELRLHLIYLINDVLHHCQR--KQA---RDLLAALQKVV 240
Query: 536 MESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 588
+ + + ++ E ++++ ++LQ+W F ++ + L++ L G
Sbjct: 241 VPIYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDESIIQQLQSPALGLG 288
>UNIPROTKB|J3QK89 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 EMBL:AC008764 HGNC:HGNC:16930 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
ProteinModelPortal:J3QK89 Ensembl:ENST00000198939 OMA:FEGPWNS
Uniprot:J3QK89
Length = 927
Score = 131 (51.2 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Query: 383 YSFAQGDTLQRWRT---EPFIMITGSGRWIPPALPTSKSP 419
+ Q + + +T EP + + PP P + P
Sbjct: 61 -ALEQQQLICKQQTPELEPAATMPPLPQ--PPLAPAAPIP 97
Score = 73 (30.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 34/181 (18%), Positives = 80/181 (44%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T ++ + L++DVLH+ + + + + +A ++
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGKSLPHSQRKQAR--EL 244
Query: 536 MESFNDLYRSI--TGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGV 592
+ + + I T + E K+ ++ ++LQ+W F D+ + L++ L G
Sbjct: 245 LAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQA 304
Query: 593 T 593
T
Sbjct: 305 T 305
Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 701 WKETN--MEAESMGLSGWNGYEE 721
W ++ M E G GWNG +
Sbjct: 466 WNNSHEGMWGEQRGDPGWNGQRD 488
>ZFIN|ZDB-GENE-070615-33 [details] [associations]
symbol:sugp1 "SURP and G patch domain containing 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-070615-33
GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
GeneTree:ENSGT00410000025695 EMBL:FP074868 IPI:IPI00931429
Ensembl:ENSDART00000114286 Bgee:E7FGI4 Uniprot:E7FGI4
Length = 604
Score = 144 (55.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 301 PPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRG 360
P V + P E + +I V PPED R +I +A ++ +GG ++ M+ R
Sbjct: 162 PSVFSSPDDEDEDEDDTHFLEIKVSPPEDADQRLIIQKMAAFIAEGGVELQKKAMQDYRD 221
Query: 361 NPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQ 392
+P F+FLF+ GSKEH YY RL + + Q
Sbjct: 222 DPTFSFLFDKGSKEHLYYRKRLAELRREQSAQ 253
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 126 (49.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q LYVG L+ +V+E+ L F FG I VK P ++ ++ R+ GFV F+ R D
Sbjct: 11 QKNTLYVGGLADEVNESILHAAFIPFGDIKDVKT--P-LDQANQKHRSFGFVTFLEREDA 67
Query: 244 QAAKDEMQGVVVYEYELKIGW 264
AA D M G +Y L + +
Sbjct: 68 SAAMDNMDGAELYGRVLTVNY 88
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 138 (53.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DG+ + ++VG L V E L++ F FG + SVKI P + CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI--PVG-------KGCGFV 367
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F NR + A + G V+ + +++ WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 119 (46.9 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
T+L + NLS Q N L RTF R+G I V I PR ++ R+ + GFV F R D +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D G +V EL++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
Score = 48 (22.0 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 828 RRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLES-EYGLA-DPNEDVSGNKR---R 882
R L V+L +Y +ERG + ++ R+R S Y + P S + R
Sbjct: 88 RELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR 147
Query: 883 DRRD 886
DRRD
Sbjct: 148 DRRD 151
Score = 44 (20.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 416 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRD 449
S+SP S Y+ RS R RT + RD
Sbjct: 116 SRSPRRRSRS-PRYSRSRSPRRSRSRTRSPPSRD 148
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 119 (46.9 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
T+L + NLS Q N L RTF R+G I V I PR ++ R+ + GFV F R D +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D G +V EL++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
Score = 48 (22.0 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 828 RRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLES-EYGLA-DPNEDVSGNKR---R 882
R L V+L +Y +ERG + ++ R+R S Y + P S + R
Sbjct: 88 RELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR 147
Query: 883 DRRD 886
DRRD
Sbjct: 148 DRRD 151
Score = 44 (20.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 416 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRD 449
S+SP S Y+ RS R RT + RD
Sbjct: 116 SRSPRRRSRS-PRYSRSRSPRRSRSRTRSPPSRD 148
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 172 GKLP-GSF--DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR 228
G +P G+F +GD T ++VG L V + L + F FG I SVKI P
Sbjct: 289 GYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--PVG------ 340
Query: 229 QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
+ CGFV F+NR + + A +++ G V+ + +++ WG++
Sbjct: 341 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 378
>UNIPROTKB|F1S9W3 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051533 "positive regulation of NFAT protein import
into nucleus" evidence=IEA] [GO:0051209 "release of sequestered
calcium ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0044325 "ion channel
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:CU929691
Ensembl:ENSSSCT00000015139 OMA:THELPTH Uniprot:F1S9W3
Length = 852
Score = 130 (50.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 536 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 593
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 701 WKETN--MEAESMGLSGWNGYEE 721
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>UNIPROTKB|Q8IWX8 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0051209 "release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0051533
"positive regulation of NFAT protein import into nucleus"
evidence=IMP] [GO:0044325 "ion channel binding" evidence=IPI]
[GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS]
[GO:0007399 "nervous system development" evidence=TAS] [GO:0006874
"cellular calcium ion homeostasis" evidence=IDA] [GO:0008285
"negative regulation of cell proliferation" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
EMBL:AF536542 GO:GO:0048471 GO:GO:0008285 GO:GO:0007399
GO:GO:0051209 GO:GO:0003723 GO:GO:0006396 GO:GO:0051533
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0033017
EMBL:AC008764 EMBL:BC021294 EMBL:Y08265 EMBL:U94836 IPI:IPI00333010
RefSeq:NP_006378.3 UniGene:Hs.740364 HSSP:Q8CH02
ProteinModelPortal:Q8IWX8 SMR:Q8IWX8 IntAct:Q8IWX8
MINT:MINT-1637299 STRING:Q8IWX8 PhosphoSite:Q8IWX8 DMDM:296439404
PaxDb:Q8IWX8 PRIDE:Q8IWX8 Ensembl:ENST00000546361 GeneID:10523
KEGG:hsa:10523 UCSC:uc002nei.1 CTD:10523 GeneCards:GC19M016629
HGNC:HGNC:16930 HPA:HPA050647 neXtProt:NX_Q8IWX8 PharmGKB:PA26459
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InParanoid:Q8IWX8 KO:K12841 OrthoDB:EOG4BCDMG PhylomeDB:Q8IWX8
GenomeRNAi:10523 NextBio:39918 Bgee:Q8IWX8 CleanEx:HS_CHERP
Genevestigator:Q8IWX8 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
Uniprot:Q8IWX8
Length = 916
Score = 131 (51.2 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Query: 383 YSFAQGDTLQRWRT---EPFIMITGSGRWIPPALPTSKSP 419
+ Q + + +T EP + + PP P + P
Sbjct: 61 -ALEQQQLICKQQTPELEPAATMPPLPQ--PPLAPAAPIP 97
Score = 66 (28.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 536 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 593
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 701 WKETN--MEAESMGLSGWNGYEE 721
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>UNIPROTKB|F1NDZ9 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AADN02061998 IPI:IPI00585527
Ensembl:ENSGALT00000006060 ArrayExpress:F1NDZ9 Uniprot:F1NDZ9
Length = 905
Score = 128 (50.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + YY ++L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLF--GGDFYGYYKYKL 60
Score = 63 (27.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/173 (18%), Positives = 76/173 (43%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 126 RQEQVTSAVALAIEQQMQKVLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 185
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T + ++ + L++DVLH+ K A R A +
Sbjct: 186 PAHCELMAGHLRNRITAEGAHFELRLHLIYLINDVLHHCQR--KQA---RDLLAALQKVV 240
Query: 536 MESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 588
+ + + ++ E ++++ ++LQ+W F ++ + L++ L G
Sbjct: 241 VPIYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDESIIQQLQSPALGLG 288
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N++VG+LSP+V + L ++F F + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 201
Query: 247 KDEMQGVVVYEYELKIGW 264
+EM G + +++ W
Sbjct: 202 INEMNGKWLSSRQIRCNW 219
>UNIPROTKB|A8E648 [details] [associations]
symbol:CHERP "CHERP protein" species:9913 "Bos taurus"
[GO:0051533 "positive regulation of NFAT protein import into
nucleus" evidence=IEA] [GO:0051209 "release of sequestered calcium
ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 CTD:10523 eggNOG:NOG267701 HOGENOM:HOG000010294
HOVERGEN:HBG052716 KO:K12841 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 GeneTree:ENSGT00600000084415 OMA:FEGPWNS
EMBL:DAAA02019093 EMBL:BC153841 IPI:IPI00871125
RefSeq:NP_001103268.1 UniGene:Bt.46185 Ensembl:ENSBTAT00000006959
GeneID:525110 KEGG:bta:525110 InParanoid:A8E648 NextBio:20874102
Uniprot:A8E648
Length = 916
Score = 130 (50.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 37/179 (20%), Positives = 76/179 (42%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+ +L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHALEQQMQKLLEETQLDMNEFDSLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 536 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 593
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 701 WKETN--MEAESMGLSGWNGYEE 721
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>UNIPROTKB|J9NZK1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
CTD:10523 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:AAEX03012307 RefSeq:XP_852773.2
ProteinModelPortal:J9NZK1 Ensembl:ENSCAFT00000050032 GeneID:610237
KEGG:cfa:610237 Uniprot:J9NZK1
Length = 916
Score = 130 (50.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 536 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 593
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 701 WKETN--MEAESMGLSGWNGYEE 721
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>UNIPROTKB|E2RHU5 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AAEX03012307 Ensembl:ENSCAFT00000024839
NextBio:20895802 Uniprot:E2RHU5
Length = 940
Score = 130 (50.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 479 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 536 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 593
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 701 WKETN--MEAESMGLSGWNGYEE 721
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>POMBASE|SPBC11C11.01 [details] [associations]
symbol:SPBC11C11.01 "U2-associated protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC11C11.01 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686
GO:GO:0045292 InterPro:IPR006569 SMART:SM00582 PROSITE:PS51391
PIR:T39711 RefSeq:NP_596390.2 GeneID:2539748 eggNOG:KOG0151
OrthoDB:EOG4TQQKF NextBio:20800899 Uniprot:Q10200
Length = 466
Score = 136 (52.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 58/248 (23%), Positives = 106/248 (42%)
Query: 410 PPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAM 469
P LP + EH + S T ++ + LT R + E +++ L E+ I +
Sbjct: 184 PKRLPNA---EHLESSTKT-----KDESQDKDKLTKLDRAKLEWLIQGLNCEKGSIGNLL 235
Query: 470 GFALDNADAAGEIVEVLTESLTLKETPIPTKV--------------ARLMLVSDVLHNSS 515
FA+++ + EI + + + TKV + + L++D+L N
Sbjct: 236 CFAVEHVNNHVEITDAFLKEFFNDQPTDDTKVYDDDYINERGEKKLSLIYLMNDILFNGI 295
Query: 516 APVKNASAYRTKFEATLPDIMESFNDLY---RSITGRITAEALKERVLKVLQVWSDWFLF 572
+ YR FE P + +DLY + + GRI + ++V+KV++VW W F
Sbjct: 296 SGTSLVWRYRFSFE---PHVERLLDDLYLFSKRLGGRIKEDIFCKKVVKVIEVWKTWIAF 352
Query: 573 SDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGA 632
+ + F SGN+ +P I A +++ KN+ + ++ QD G
Sbjct: 353 QEETLERAWRNF--SGNTPQSP--QINSAALKVETKNSWTAISEETEGLQDDEEYNGIPV 408
Query: 633 AIKELMNL 640
+ EL+N+
Sbjct: 409 DVNELLNV 416
>ASPGD|ASPL0000075677 [details] [associations]
symbol:AN4943 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 GO:GO:0003723 GO:GO:0006396
EMBL:BN001303 EMBL:AACD01000084 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 eggNOG:NOG307351 KO:K12842
OrthoDB:EOG4TQQKF RefSeq:XP_662547.1 ProteinModelPortal:Q5B3D7
EnsemblFungi:CADANIAT00005454 GeneID:2872744 KEGG:ani:AN4943.2
HOGENOM:HOG000197003 OMA:HAWRYRQ Uniprot:Q5B3D7
Length = 807
Score = 101 (40.6 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 500 KVARLMLVSDVLHNSSAP-VKNASAYRTKFEATLPD--IMESFNDLYRSIT-GRITAEAL 555
K+ L L+SD+L +S+ V++A YR FE+ L + E L + ++ GR+ AE
Sbjct: 569 KLVGLYLISDILSSSATSGVRHAWRYRQLFESALKTHKVFEHLGRLEKDLSWGRLRAEKW 628
Query: 556 KERVLKVLQVWSDWFLF 572
K + +L +W W +F
Sbjct: 629 KRSIGSLLHLWEGWCVF 645
Score = 77 (32.2 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 32/120 (26%), Positives = 51/120 (42%)
Query: 297 GPSGPPVTTVPSQNSELVLTPNVPDIMVIPPED-RHLRHVIDTLALYVLDGGCAFEQAIM 355
G PP + PS + + + V P D + LR + TL +L+ G FE +M
Sbjct: 297 GGFAPPSSYGPSYGG----SSSTLQVEVKAPSDLKQLRLIHKTLE-NLLNYGPEFEALLM 351
Query: 356 ERG--RGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL--QRWRTE-PFIMITGSGRWIP 410
R + + +L++ S YY W+L+ QR ++ PF + G WIP
Sbjct: 352 SRPEVQKEEKWAWLWDARSPGGVYYRWKLWDIITNSRSKDQRGHSQNPFPIFEGGAMWIP 411
Score = 56 (24.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 2 SSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDS-GPGSKAF 53
S S KK+ F++ +Y +FV+SF+ DS P F
Sbjct: 15 SKLSAPAKKSLFERQKAEAEAKRARERAETAAVYEDFVKSFEDDSPAPERSTF 67
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 170 PSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQ 229
P+G L + +GD T ++VG L V + L + F FG I SVKI P
Sbjct: 290 PNGTL--TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--PVG------- 338
Query: 230 RNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
+ CGFV F+NR + + A +++ G V+ + +++ WG++
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 376
>UNIPROTKB|F5H5X1 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
EMBL:AC131009 EMBL:AC117500 HGNC:HGNC:10790 ChiTaRS:SFSWAP
IPI:IPI01012731 ProteinModelPortal:F5H5X1 SMR:F5H5X1
Ensembl:ENST00000535236 ArrayExpress:F5H5X1 Bgee:F5H5X1
Uniprot:F5H5X1
Length = 546
Score = 114 (45.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 46/176 (26%), Positives = 72/176 (40%)
Query: 283 MAIRSKEGATVILSGPSG----PPVTTVPSQNSELVLTPNV----PDIMVIPPEDRHLRH 334
+ + + G T P G PP TT + + T P +IPP ++
Sbjct: 193 VTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPP-DVQP 251
Query: 335 VIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ---GDTL 391
VID LA YV G FE ++ R + + F FL + + + YY ++ F Q GD++
Sbjct: 252 VIDKLAEYVARNGLKFETSV--RAKNDQRFEFL-QPWHQYNAYYEFKKQFFLQKEGGDSM 308
Query: 392 QRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ 447
Q + P T S P +PE E G +G + A +T+ D +
Sbjct: 309 QAV-SAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGK 363
Score = 70 (29.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 39/159 (24%), Positives = 68/159 (42%)
Query: 707 EAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALE 766
+A +G +G +++ S+ +VP G ++ I K ++ND +LP K ++
Sbjct: 337 DAAEVGARAGSGGKKEASSSK---TVPDGKLVKASFAPISFAIKAKEND-LLPLEKNRVK 392
Query: 767 -DDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQ-R 824
DD+SDD+++ A P+ A ++ P + +Q +
Sbjct: 393 LDDDSDDDEESKEGQESSSSA------ANTNPAVAPPC-VVVEEKKPQLTQEELEAKQAK 445
Query: 825 QKLR-RLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKR 862
QKL RL + RE L + S E EK++ RKR
Sbjct: 446 QKLEDRLAAAA---REKLAQA---SKESKEKQLQAERKR 478
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 112 (44.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
++ L++G LS VDE L F FG +A V+I + ++ R R GFV F D
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAY---DKGSGRSRGFGFVDFAEEGDAL 96
Query: 245 AAKDEMQGVVVYEYELKIGW 264
+AKD M G + L+I +
Sbjct: 97 SAKDAMDGKGLLGRPLRISF 116
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 128 (50.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 79
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 80 AVDEMNGKELNGKQIYVG 97
>UNIPROTKB|G4MV79 [details] [associations]
symbol:MGG_15600 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000061 Pfam:PF01805 GO:GO:0003723
GO:GO:0006396 EMBL:CM001232 InterPro:IPR006569 SUPFAM:SSF109905
PROSITE:PS51391 RefSeq:XP_003713901.1 EnsemblFungi:MGG_15600T0
GeneID:12987307 KEGG:mgr:MGG_15600 Uniprot:G4MV79
Length = 826
Score = 95 (38.5 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 32/131 (24%), Positives = 56/131 (42%)
Query: 288 KEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 347
KE ++ G P T+ +Q V V + V PP+D H+ I + +L+ G
Sbjct: 298 KERSSYRGRGRGFAPPTSYDAQVGSPVNRSGVMHVPVRPPKDIHMLRTIHMVVESILEHG 357
Query: 348 CAFEQAIMERG--RGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGS 405
FE +M R + + ++++ S+ +Y +RL+ G QR + + + G
Sbjct: 358 PEFEALLMSRPDVQREEKWAWIWDARSEGGVWYRYRLWEVITGARTQRGKGKFVPLFEGG 417
Query: 406 GRWIPPALPTS 416
W P P S
Sbjct: 418 SAWKLPDQPLS 428
Score = 90 (36.7 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 499 TKVARLMLVSDVLHNSSAP-VKNASAYRTKFEATLPD--IMESFNDLYRSIT-GRITAEA 554
+K+ L ++SD+L +SS +++A YR FEA L + + E + + GR+ AE
Sbjct: 577 SKLIGLYVISDILSSSSTSGIRHAWRYRQHFEAALRNRKVCEGLGMVPEKMGWGRLRAEK 636
Query: 555 LKERVLKVLQVWSDWFLF 572
K V VL W W +F
Sbjct: 637 WKRSVGLVLGHWEGWCVF 654
Score = 44 (20.5 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 18/88 (20%), Positives = 31/88 (35%)
Query: 9 KKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEA 68
KK+ F++ + +FV+SF DS + R P+ + +
Sbjct: 22 KKSVFERQREEAEAKRRREEAETAAVLEDFVKSFDRDSDRDNS---RDNRFPPSRNERSS 78
Query: 69 EGEKSKDGVSVPKKGSRY--VPSFIPPP 94
G G R+ + S +PPP
Sbjct: 79 NVSDRPQGFGAGA-GRRHFGIQSGLPPP 105
>UNIPROTKB|F1NAQ9 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
OMA:EKVAMEN GeneTree:ENSGT00410000025695 EMBL:AADN02071815
IPI:IPI00580066 Ensembl:ENSGALT00000004744 Uniprot:F1NAQ9
Length = 619
Score = 131 (51.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 378
+I V+PPED R V++ LA +V +GG E+ ME + NP F+FL + S+E YY
Sbjct: 167 EIKVLPPEDAETRQVVEKLARFVAEGGPELEKVAMEDYKDNPAFSFLHDKNSREFLYY 224
Score = 49 (22.3 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 653 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 712
GL G+ + + + L +A+K++ E +++ + ++ + +E M E
Sbjct: 394 GLGYEKGKPVGLVGVTELSEAQKKQLKE-QQEMQQMYDMIM--KHKQAMQEMQMMWEKAI 450
Query: 713 LSGWNGYEEDEKLSQAVGS 731
+GY+ DE++ +G+
Sbjct: 451 QQHQHGYDSDEEVDSELGT 469
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 130 (50.8 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DG+ ++VG + P V + L + F +FG + SVKI P + CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI--PVG-------KGCGFV 361
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F +R + A + + G V+ + +++ WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 130 (50.8 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 78
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 79 AVDEMNGKELNGKQIYVG 96
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 129 (50.5 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N++VG+LSP+V + L F + + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 196
Query: 247 KDEMQGVVVYEYELKIGW 264
DE+ G + +++ W
Sbjct: 197 IDEITGKWLGSRQIRCNW 214
>UNIPROTKB|Q12872 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0005634 GO:GO:0006355 EMBL:CH471054 GO:GO:0006351
GO:GO:0003723 GO:GO:0048025 GO:GO:0006376 SUPFAM:SSF109905
InterPro:IPR019147 Pfam:PF09750 EMBL:AC131009 EMBL:U08377
EMBL:AC117500 EMBL:BC008707 EMBL:BC015953 EMBL:BC136678
EMBL:BC144364 IPI:IPI00290094 IPI:IPI00790550 PIR:A54037 PIR:B54037
PIR:C54037 RefSeq:NP_001248340.1 RefSeq:NP_004583.2
UniGene:Hs.308171 PDB:2E5Z PDB:2E60 PDBsum:2E5Z PDBsum:2E60
ProteinModelPortal:Q12872 SMR:Q12872 IntAct:Q12872 STRING:Q12872
PhosphoSite:Q12872 DMDM:292495067 PRIDE:Q12872
Ensembl:ENST00000261674 Ensembl:ENST00000541286 GeneID:6433
KEGG:hsa:6433 UCSC:uc001uja.1 CTD:6433 GeneCards:GC12P132196
H-InvDB:HIX0036782 HGNC:HGNC:10790 HPA:HPA039362 HPA:HPA040063
MIM:601945 neXtProt:NX_Q12872 PharmGKB:PA35706 eggNOG:NOG289028
HOVERGEN:HBG079184 InParanoid:Q12872 OMA:MYYSYYM OrthoDB:EOG4ZW59T
PhylomeDB:Q12872 ChiTaRS:SFSWAP EvolutionaryTrace:Q12872
GenomeRNAi:6433 NextBio:24987 ArrayExpress:Q12872 Bgee:Q12872
CleanEx:HS_SFRS8 Genevestigator:Q12872 GermOnline:ENSG00000061936
Uniprot:Q12872
Length = 951
Score = 114 (45.2 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 46/176 (26%), Positives = 72/176 (40%)
Query: 283 MAIRSKEGATVILSGPSG----PPVTTVPSQNSELVLTPNV----PDIMVIPPEDRHLRH 334
+ + + G T P G PP TT + + T P +IPP ++
Sbjct: 400 VTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPP-DVQP 458
Query: 335 VIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ---GDTL 391
VID LA YV G FE ++ R + + F FL + + + YY ++ F Q GD++
Sbjct: 459 VIDKLAEYVARNGLKFETSV--RAKNDQRFEFL-QPWHQYNAYYEFKKQFFLQKEGGDSM 515
Query: 392 QRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ 447
Q + P T S P +PE E G +G + A +T+ D +
Sbjct: 516 QAV-SAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGK 570
Score = 70 (29.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 39/159 (24%), Positives = 68/159 (42%)
Query: 707 EAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALE 766
+A +G +G +++ S+ +VP G ++ I K ++ND +LP K ++
Sbjct: 544 DAAEVGARAGSGGKKEASSSK---TVPDGKLVKASFAPISFAIKAKEND-LLPLEKNRVK 599
Query: 767 -DDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQ-R 824
DD+SDD+++ A P+ A ++ P + +Q +
Sbjct: 600 LDDDSDDDEESKEGQESSSSA------ANTNPAVAPPC-VVVEEKKPQLTQEELEAKQAK 652
Query: 825 QKLR-RLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKR 862
QKL RL + RE L + S E EK++ RKR
Sbjct: 653 QKLEDRLAAAA---REKLAQA---SKESKEKQLQAERKR 685
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 130 (50.8 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 182
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 183 AVDEMNGKELNGKQIYVG 200
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIAS----VKIMWPRTEEERRRQRNCGFVAFMNRAD 242
N++VG+LSP+V + L +F F +S ++MW +++ R R GFV+F N+ D
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMW---DQKTGRSRGFGFVSFRNQQD 205
Query: 243 GQAAKDEMQGVVVYEYELKIGW 264
Q A +EM G V +++ W
Sbjct: 206 AQTAINEMNGKWVSSRQIRCNW 227
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238
DDG P+T LYVGNLS V E +L+ F + GP S K++ T + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----C-FVEFY 56
Query: 239 NRADGQAAKDEMQGVVVYEYELKIGW 264
D AA M G + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238
DDG P+T LYVGNLS V E +L+ F + GP S K++ T + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----C-FVEFY 56
Query: 239 NRADGQAAKDEMQGVVVYEYELKIGW 264
D AA M G + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 139 (54.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 174 LPGSFDDGDPQTTNLYVGNLSPQVDENFLLRT-FGRFGPIASVKIMWPRTEEERRRQRNC 232
LP + + DP T ++VG L P+ E F LR+ F FGPI +V+I P +NC
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTE-FQLRSLFKPFGPILNVRI--PNG-------KNC 397
Query: 233 GFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 266
GFV F R D +A+ +QG +V +++ WG+
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 145 HWRDGRHTESSAPSS-RFDELPDDFDPS 171
+W G +SS PS+ F D P+
Sbjct: 175 NWASGATLQSSIPSTPEFSLFVGDLSPT 202
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 41/115 (35%), Positives = 57/115 (49%)
Query: 152 TESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGP 211
T +S P+S P GK PG+ DP TNLYV NL D++ L R F G
Sbjct: 355 TMNSLPNSMIGSSSQP-PPGGKNPGT----DP--TNLYVYNLPSDADDSLLYRLFSPCGA 407
Query: 212 IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 266
IASVKI+ +T + R GFV ++ AD +A + + GV V + + + K
Sbjct: 408 IASVKIVRDQTTQVCR---GYGFVRMVSLADSYSAINSINGVQVGGKTISVSFKK 459
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 151 HTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFG 210
HT S + D P D P + P + Q L+V N+ + + L + FG+FG
Sbjct: 87 HTVSGTATQTDDAAPTDGQPQTQ-PSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFG 145
Query: 211 PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262
I V+I++ R + GFV F N AD A++++ G VV ++++
Sbjct: 146 KILDVEIIF-----NERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 192
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 201
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 202 AVDEMNGKELNGKQIYVG 219
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 128 (50.1 bits), Expect = 0.00017, P = 0.00017
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 128 (50.1 bits), Expect = 0.00017, P = 0.00017
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 214
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 215 AVDEMNGKELNGKQIYVG 232
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 128 (50.1 bits), Expect = 0.00019, P = 0.00019
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 247 KDEMQG 252
DEM G
Sbjct: 248 VDEMNG 253
>UNIPROTKB|H0YFR9 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905 EMBL:AC131009
EMBL:AC117500 HGNC:HGNC:10790 ChiTaRS:SFSWAP
Ensembl:ENST00000537164 Uniprot:H0YFR9
Length = 320
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 51/195 (26%), Positives = 80/195 (41%)
Query: 283 MAIRSKEGATVILSGPSG----PPVTTVPSQNSELVLTPNV----PDIMVIPPEDRHLRH 334
+ + + G T P G PP TT + + T P +IPP ++
Sbjct: 40 VTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPP-DVQP 98
Query: 335 VIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ---GDTL 391
VID LA YV G FE ++ R + + F FL + + + YY ++ F Q GD++
Sbjct: 99 VIDKLAEYVARNGLKFETSV--RAKNDQRFEFL-QPWHQYNAYYEFKKQFFLQKEGGDSM 155
Query: 392 QRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ---- 447
Q + P T S P +PE E G +G + A +T+ D +
Sbjct: 156 QAV-SAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGKLVKA 214
Query: 448 RDEFEDMLRALTLER 462
+ + ED L A E+
Sbjct: 215 KQKLEDRLAAAAREK 229
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 102 (41.0 bits), Expect = 0.00024, P = 0.00024
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYE 257
+M G ++ +
Sbjct: 66 KDMNGKMMVD 75
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 247 KDEMQGVVVYEYELKIG 263
DEM G + ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 37/111 (33%), Positives = 56/111 (50%)
Query: 154 SSAPSSRFDELPDDFDPSGKLPGSFDDGDPQT-TNLYVGNLSPQVDENFLLRTFGRFGPI 212
S +P+ R DE DP +L D+G T +NL+V + P++ E+ + R F ++G +
Sbjct: 37 SRSPNGRLDER-GPIDPRKQLDD--DEGAVNTGSNLFVTGIHPRLTESDISRLFEKYGDV 93
Query: 213 ASVKIMW-PRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262
S IM P T+E R GFV + AAK+ +QG V+ L I
Sbjct: 94 ESCSIMVDPHTKESR----GFGFVNMVTAEQADAAKEGLQGEVIEGRTLSI 140
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 124 (48.7 bits), Expect = 0.00025, P = 0.00025
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
+ DP T ++VG L P V E L + F +G + VKI+ + CGFV F
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---------AGKRCGFVQFGT 326
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKS 267
RA + A + G + +++ WG+S
Sbjct: 327 RASAEQALSSLNGTQLGGQSIRLSWGRS 354
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 124 (48.7 bits), Expect = 0.00026, P = 0.00026
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
G+ + DP T ++VG + V E+ L FG+FG + VKI P + CGFV
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI--PAG-------KRCGFV 318
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
+ NRA + A + G + +++ WG+S
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 123 (48.4 bits), Expect = 0.00030, P = 0.00030
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
D DP T ++VG L V ++ L FG+FG + VKI P + CGFV + N
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP-PG--------KRCGFVQYAN 304
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKS 267
+A + A + G + +++ WG+S
Sbjct: 305 KASAEHALSVLNGTQLGGQSIRLSWGRS 332
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 125 (49.1 bits), Expect = 0.00038, P = 0.00038
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N ++D+ L FGRFG + SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVM----TDEGGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQG 252
A DEM G
Sbjct: 247 AVDEMNG 253
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 100 (40.3 bits), Expect = 0.00038, P = 0.00038
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 100 (40.3 bits), Expect = 0.00038, P = 0.00038
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 100 (40.3 bits), Expect = 0.00038, P = 0.00038
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
T +YVGNLSP ++ L F +G + +M R + R R GFV + + ++ +A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTD---RSRGFGFVTYSSHSEAEA 59
Query: 246 AKDEMQG 252
A M G
Sbjct: 60 AVSGMDG 66
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 123 (48.4 bits), Expect = 0.00042, P = 0.00042
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+++VG+LS +V++ L + F FG ++ ++MW + + R R GFVAF +R+D + A
Sbjct: 177 HIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMW---DMKTGRSRGYGFVAFRDRSDAEKA 233
Query: 247 KDEMQGVVVYEYELKIGW 264
M G + ++ W
Sbjct: 234 LSSMDGEWLGSRAIRCNW 251
>UNIPROTKB|A4FV64 [details] [associations]
symbol:SF4 "SF4 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
KO:K13096 eggNOG:NOG299701 CTD:57794 HOVERGEN:HBG079172 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:DAAA02019030 EMBL:BC123792
IPI:IPI00838095 RefSeq:NP_001096748.1 UniGene:Bt.61513 SMR:A4FV64
STRING:A4FV64 Ensembl:ENSBTAT00000049124 GeneID:533971
KEGG:bta:533971 HOGENOM:HOG000253953 NextBio:20876213
Uniprot:A4FV64
Length = 635
Score = 123 (48.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 299 SGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 358
S P V P ++ E + +I V PPE R VI+ LA +V +GG E+ ME
Sbjct: 146 SRPSVFQSPDEDDEEDYEQWL-EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENY 204
Query: 359 RGNPLFNFLFELGSKEHTYY 378
+ NP F+FL + S+E YY
Sbjct: 205 KDNPAFSFLHDKNSREFLYY 224
Score = 121 (47.7 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 324 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 383
V PPED ++++ + LA ++ DGG E ++ R N F+FL+E S+ + YY +L
Sbjct: 245 VSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLE 304
Query: 384 SFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSP 419
F + P G R PP P +P
Sbjct: 305 EFRKAKAGPTGT--PMAPDLGLKRRSPPETPLGSTP 338
Score = 49 (22.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 653 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 712
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 410 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 466
Query: 713 LSGWNGYEEDEKLSQAVGS 731
+GY+ DE++ +G+
Sbjct: 467 QQHQHGYDSDEEVDSELGT 485
>UNIPROTKB|E2RCV3 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585
Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 KO:K13096 CTD:57794 GeneTree:ENSGT00410000025695
EMBL:AAEX03012271 RefSeq:XP_864993.2 Ensembl:ENSCAFT00000022747
GeneID:476661 KEGG:cfa:476661 Uniprot:E2RCV3
Length = 636
Score = 123 (48.4 bits), Expect = 0.00046, Sum P(2) = 0.00045
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 299 SGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 358
S P V P ++ E + +I V PPE R VI+ LA +V +GG E+ ME
Sbjct: 147 SRPSVFQSPDEDEEEDYEQWL-EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENY 205
Query: 359 RGNPLFNFLFELGSKEHTYY 378
+ NP F+FL + S+E YY
Sbjct: 206 KDNPAFSFLHDKNSREFLYY 225
Score = 49 (22.3 bits), Expect = 0.00046, Sum P(2) = 0.00045
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 653 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 712
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 411 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 467
Query: 713 LSGWNGYEEDEKLSQAVGS 731
+GY+ DE++ +G+
Sbjct: 468 QQHQHGYDSDEEVDSELGT 486
>UNIPROTKB|J9P8U4 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:AAEX03012271
Ensembl:ENSCAFT00000049900 Uniprot:J9P8U4
Length = 640
Score = 123 (48.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 299 SGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 358
S P V P ++ E + +I V PPE R VI+ LA +V +GG E+ ME
Sbjct: 151 SRPSVFQSPDEDEEEDYEQWL-EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENY 209
Query: 359 RGNPLFNFLFELGSKEHTYY 378
+ NP F+FL + S+E YY
Sbjct: 210 KDNPAFSFLHDKNSREFLYY 229
Score = 49 (22.3 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 653 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 712
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 415 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 471
Query: 713 LSGWNGYEEDEKLSQAVGS 731
+GY+ DE++ +G+
Sbjct: 472 QQHQHGYDSDEEVDSELGT 490
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 131 (51.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+++VG+LS +V++ LL+ F FG ++ ++MW + + R R GFVAF RAD + A
Sbjct: 183 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMW---DMKTGRSRGYGFVAFRERADAEKA 239
Query: 247 KDEMQGVVVYEYELKIGW 264
M G + ++ W
Sbjct: 240 LTSMDGEWLGSRAIRCNW 257
Score = 37 (18.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 692 SSSGRY--SRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGT 736
SS G Y G M + +G G+E+ + Q G VP T
Sbjct: 401 SSPGPYFPQYGGPGGPMTPQGPAQAG-RGWEQPQMAQQGFGQVPGNT 446
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 99 (39.9 bits), Expect = 0.00049, P = 0.00049
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 198 DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257
DE L FG+FGP SVK+M +E + + GFV+F D Q A DEM G +
Sbjct: 2 DER-LKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 56
Query: 258 YELKIG 263
++ +G
Sbjct: 57 KQIYVG 62
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 124 (48.7 bits), Expect = 0.00050, P = 0.00050
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ NL +D+ L F RFGP SVK+M +E + + GFV+F D +
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVM----TDESGKSKGFGFVSFERHEDARK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKDLNGKQIYVG 264
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 123 (48.4 bits), Expect = 0.00062, P = 0.00062
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 247 KDEMQGVVVYEYELKIG 263
DEM G + ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 120 (47.3 bits), Expect = 0.00071, P = 0.00071
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 241
DP T ++VG LS V E+ L F FG I VKI P + CGFV F++R
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIP-PG--------KGCGFVQFVHRH 330
Query: 242 DGQAAKDEMQGVVVYEYELKIGWGKS 267
+ A ++MQG + +++ WG+S
Sbjct: 331 AAEMAINQMQGYPIGNSRVRLSWGRS 356
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 113 (44.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
G D DP T ++VG L V ++ L F ++G I VKI P + CGFV
Sbjct: 251 GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI--PAG-------KRCGFV 301
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F ++ + A + GV + +++ WG+S
Sbjct: 302 QFSEKSCAEEALRMLNGVQLGGTTVRLSWGRS 333
Score = 52 (23.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 674 EKQRGYELDDDLKSAHSQSSSGRYSRGWKET 704
++Q GY + D + + S G YS G+++T
Sbjct: 354 QEQYGYTMPQDPNAYYGGYSGGGYSGGYQQT 384
>ZFIN|ZDB-GENE-040407-1 [details] [associations]
symbol:cherp "calcium homeostasis endoplasmic
reticulum protein" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-040407-1
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905
PROSITE:PS51391 EMBL:BC171627 IPI:IPI00490676 UniGene:Dr.75231
ArrayExpress:B7ZVL5 Bgee:B7ZVL5 Uniprot:B7ZVL5
Length = 910
Score = 118 (46.6 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 326 PPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
PPED+ LR+VID LA +V G FE+ ME+ + N F+FLF G + YY ++L
Sbjct: 6 PPEDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNAKFSFLF--GGEFFGYYKYKL 60
Score = 61 (26.5 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 35/174 (20%), Positives = 72/174 (41%)
Query: 423 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 478
++ T A + + ++ L ++Q D E +++L+ + T + I + NA
Sbjct: 132 RQEQITAAISLAMEQQMQKLLVETQLDMNELDNLLQPIIDTCTKDAISAGKNWMFGNAKT 191
Query: 479 AGE---IVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 535
+ L +T E ++ + L +DVLH+ KN + A L +
Sbjct: 192 PQHCELMASHLRNRITADEAHFELRLHLIYLTNDVLHHCQR--KN----QKDLLAALQKV 245
Query: 536 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 588
+ +Y T ++ E K+ ++ ++LQ+W F D + L++ L G
Sbjct: 246 VVP---IY--CTSFLSVEEDKQQKITRLLQLWEKNGYFDDVTIQQLQSPALGLG 294
Score = 39 (18.8 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 22/100 (22%), Positives = 33/100 (33%)
Query: 632 AAIKELMNLPLSELERRCR---HNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSA 688
AA++ + P + R NGL +M R + RG +
Sbjct: 671 AAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRKKEQDKRSSARGSR-SRSRSHS 729
Query: 689 HSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQA 728
+SSS SR K + + S S Y SQ+
Sbjct: 730 RGRSSSHSSSRSSKSSRSRSRSRSRSRSRSYSRSRSRSQS 769
>UNIPROTKB|I3L1D4 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
Ensembl:ENST00000570626 Bgee:I3L1D4 Uniprot:I3L1D4
Length = 189
Score = 112 (44.5 bits), Expect = 0.00074, P = 0.00074
Identities = 31/104 (29%), Positives = 48/104 (46%)
Query: 152 TESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGP 211
T S + D P D P + P + Q L+V N+ + + L + FG+FG
Sbjct: 86 TVSGTATQTDDAAPTDGQPQTQ-PSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGK 144
Query: 212 IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255
I V+I++ R + GFV F N AD A++++ G VV
Sbjct: 145 ILDVEIIF-----NERGSKGFGFVTFENSADADRAREKLHGTVV 183
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 119 (46.9 bits), Expect = 0.00083, P = 0.00083
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 241
DP T ++VG LS V E+ L F FG I VKI P + CGFV F+ R
Sbjct: 282 DPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIP-PG--------KGCGFVQFVQRH 332
Query: 242 DGQAAKDEMQGVVVYEYELKIGWGKS 267
+ A ++MQG + +++ WG+S
Sbjct: 333 AAEMAINQMQGYPIGNSRVRLSWGRS 358
>RGD|1310496 [details] [associations]
symbol:Sugp1 "SURP and G patch domain containing 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
RGD:1310496 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701 CTD:57794
HOVERGEN:HBG079172 OrthoDB:EOG4VX24Z GeneTree:ENSGT00410000025695
EMBL:BC079341 IPI:IPI00206072 RefSeq:NP_001011920.1
RefSeq:XP_003751619.1 UniGene:Rn.67035 ProteinModelPortal:Q68FU8
SMR:Q68FU8 STRING:Q68FU8 PhosphoSite:Q68FU8 PRIDE:Q68FU8
Ensembl:ENSRNOT00000027826 GeneID:290666 KEGG:rno:290666
UCSC:RGD:1310496 InParanoid:Q68FU8 NextBio:631453
ArrayExpress:Q68FU8 Genevestigator:Q68FU8
GermOnline:ENSRNOG00000020510 Uniprot:Q68FU8
Length = 644
Score = 120 (47.3 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 378
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 174 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 231
Score = 49 (22.3 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 653 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 712
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 419 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 475
Query: 713 LSGWNGYEEDEKLSQAVGS 731
+GY+ DE++ +G+
Sbjct: 476 QQHQHGYDSDEEVDSELGT 494
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 973 823 0.00079 122 3 11 23 0.46 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 92
No. of states in DFA: 621 (66 KB)
Total size of DFA: 396 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 81.54u 0.19s 81.73t Elapsed: 00:00:04
Total cpu time: 81.56u 0.19s 81.75t Elapsed: 00:00:04
Start: Fri May 10 08:54:31 2013 End: Fri May 10 08:54:35 2013