BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002060
(973 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/580 (37%), Positives = 321/580 (55%), Gaps = 42/580 (7%)
Query: 31 TARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSF 90
A +Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+
Sbjct: 113 AAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQK 168
Query: 91 IPPPLAAKGKD-SERKKEEERP---REKDRGKSRNIDNFMEELKHEQEMRERRNQER--- 143
PP ++ + S E ++P + + K N++ F EELK QE R+ R++ +
Sbjct: 169 NPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRL 228
Query: 144 ------EHWRDGRHTESSAPSSRF-DELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQ 196
+ DG+ APS R + DD+ PGS D GDP TTNLY+GN++PQ
Sbjct: 229 SRFEPPQSDSDGQRRSMDAPSRRNRSSVLDDY-----APGSHDVGDPSTTNLYLGNINPQ 283
Query: 197 VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256
++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++
Sbjct: 284 MNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIM 343
Query: 257 EYELKIGWGKSV-----------ALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTT 305
+E+K+GWGK+V ++ LP PPP + ++ L P+ P+
Sbjct: 344 SFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGLPFNAQPRER--LKNPNA-PMLP 399
Query: 306 VPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFN 365
P + T + + V+ P +R+L +I + +V+ G FE IM R NP+F
Sbjct: 400 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 459
Query: 366 FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKES 425
FLFE + H YY W+LYS QGD+ +WRTE F M W PP L E++
Sbjct: 460 FLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQE 519
Query: 426 GTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEV 485
+ S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+
Sbjct: 520 TEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDC 575
Query: 486 LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRS 545
+TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+
Sbjct: 576 ITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRT 635
Query: 546 ITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 636 IQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/581 (37%), Positives = 322/581 (55%), Gaps = 43/581 (7%)
Query: 31 TARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSF 90
A +Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+
Sbjct: 113 AAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQK 168
Query: 91 IPPPLAAKGKD-SERKKEEERP---REKDRGKSRNIDNFMEELKHEQEMRERRNQER--- 143
PP ++ + S E ++P + + K N++ F EELK QE R+ R++ +
Sbjct: 169 NPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRL 228
Query: 144 ------EHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 195
+ DG+ APS +R + DD+ PGS D GDP TTNLY+GN++P
Sbjct: 229 SRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINP 283
Query: 196 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255
Q++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++
Sbjct: 284 QMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMI 343
Query: 256 YEYELKIGWGKSV-----------ALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVT 304
+E+K+GWGK+V ++ LP PPP + ++ L P+ P+
Sbjct: 344 MSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGLPFNAQPRER--LKNPNA-PML 399
Query: 305 TVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLF 364
P + T + + V+ P +R+L +I + +V+ G FE IM R NP+F
Sbjct: 400 PPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMF 459
Query: 365 NFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKE 424
FLFE + H YY W+LYS QGD+ +WRTE F M W PP L E++
Sbjct: 460 RFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQ 519
Query: 425 SGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVE 484
+ S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+
Sbjct: 520 ETEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVD 575
Query: 485 VLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYR 544
+TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR
Sbjct: 576 CITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYR 635
Query: 545 SITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 636 TIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/581 (37%), Positives = 320/581 (55%), Gaps = 43/581 (7%)
Query: 31 TARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSF 90
A +Y EF+ +F+G G K FVRGG ++ E + ++ K + K SR+
Sbjct: 113 AAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKDEHETDEKRGK----IYKPSSRFADQK 168
Query: 91 IPPPLAAKGKD-SERKKEEERP---REKDRGKSRNIDNFMEELKHEQEMRERRNQER--- 143
PP ++ + S E ++P + + K N++ F EELK QE R+ R++ +
Sbjct: 169 NPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRL 228
Query: 144 ------EHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 195
+ DG+ PS +R + DD+ PGS D GDP TTNLY+GN++P
Sbjct: 229 SRFEPPQSDSDGQRRSMDVPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINP 283
Query: 196 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255
Q++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++
Sbjct: 284 QMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMI 343
Query: 256 YEYELKIGWGKSV-----------ALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVT 304
+E+K+GWGK+V ++ LP PPP + ++ L P+ P+
Sbjct: 344 MSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGLPFNAQPRER--LKNPNA-PML 399
Query: 305 TVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLF 364
P + T + + V+ P +R+L +I + +V+ G FE IM R NP+F
Sbjct: 400 PPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMF 459
Query: 365 NFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKE 424
FLFE + H YY W+LYS QGD+ +WRTE F M W PP L E++
Sbjct: 460 RFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQ 519
Query: 425 SGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVE 484
+ S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+
Sbjct: 520 ETEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVD 575
Query: 485 VLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYR 544
+TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR
Sbjct: 576 CITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYR 635
Query: 545 SITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 636 TIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 174 LPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCG 233
LP + + DP T ++VG L P+ E L F FGPI +V+I +NCG
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI---------PNGKNCG 398
Query: 234 FVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 266
FV F R D +A+ +QG +V +++ WG+
Sbjct: 399 FVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DGD T ++VG L +V + L ++F +FG + SVKI P + CGFV
Sbjct: 285 GSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PAG-------KGCGFV 335
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
F +R+ Q A ++ G ++ + +++ WG+S A
Sbjct: 336 QFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA 369
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
+++G+L +DE++L F + G + SVKI+ R ++ + +R GFV F A +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKII--RNKQTGQSER-YGFVEFNTHAAAEKVL 142
Query: 248 DEMQGVVV 255
G ++
Sbjct: 143 QSYNGTMM 150
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DG+ + ++VG L V E L++ F FG + SVKI + CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---------PVGKGCGFV 367
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F NR + A + G V+ + +++ WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
Score = 40.0 bits (92), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 188 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+L+P V + LL TF GR+ + K++ + R + GFV F + + A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVV---IDSNTGRSKGYGFVRFGDENERSRA 271
Query: 247 KDEMQGVVVYEYELKIGWGKSVALPSQA 274
EM G ++++G +A P +A
Sbjct: 272 MTEMNGAFCSSRQMRVG----IATPKRA 295
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-----GFVAFMNRAD 242
L+VG+L +DE +L F ++SVK++ R ++ C GFV F++R+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVI--------RNKQTCQSEGYGFVEFLSRSA 172
Query: 243 GQAAKDEMQGVVV--YEYELKIGW 264
+ A GV + E ++ W
Sbjct: 173 AEEALQSFSGVTMPNAEQPFRLNW 196
>sp|Q10200|YBY1_SCHPO Uncharacterized protein C11C11.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11C11.01 PE=1 SV=2
Length = 466
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 443 LTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKV- 501
LT R + E +++ L E+ I + FA+++ + EI + + + TKV
Sbjct: 209 LTKLDRAKLEWLIQGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQPTDDTKVY 268
Query: 502 -------------ARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLY---RS 545
+ + L++D+L N + YR FE P + +DLY +
Sbjct: 269 DDDYINERGEKKLSLIYLMNDILFNGISGTSLVWRYRFSFE---PHVERLLDDLYLFSKR 325
Query: 546 ITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEI 605
+ GRI + ++V+KV++VW W F + + F SGN+ +P I A ++
Sbjct: 326 LGGRIKEDIFCKKVVKVIEVWKTWIAFQEETLERAWRNF--SGNTPQSP--QINSAALKV 381
Query: 606 DKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNL 640
+ KN+ + ++ QD G + EL+N+
Sbjct: 382 ETKNSWTAISEETEGLQDDEEYNGIPVDVNELLNV 416
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 168 FDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR 227
+ P+G L + +GD T ++VG L V + L + F FG I SVKI
Sbjct: 288 YMPNGTL--TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---------P 336
Query: 228 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
+ CGFV F+NR + + A +++ G V+ + +++ WG++ A
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 378
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 188 LYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+LSP V +N L TF ++ + + K++ + R + GFV F + + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVV---LDANTGRSKGYGFVRFGDENERTKA 255
Query: 247 KDEMQGVVVYEYELKIG 263
EM GV ++IG
Sbjct: 256 MTEMNGVKCSSRAMRIG 272
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 168 FDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR 227
+ PSG S +GD T ++VG L V + L + F FG I SVKI
Sbjct: 290 YMPSGAFTRS--EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---------P 338
Query: 228 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
+ CGFV F+NR + + A +++ G V+ + +++ WG++ A
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 380
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
++VG+L+P V + L TF P SVK + R + GFV F + + A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYP--SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 248 DEMQGVVVYEYELKIG 263
EM GV ++IG
Sbjct: 259 TEMNGVKCSSRAMRIG 274
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G SG +P
Sbjct: 66 KDMNGTSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSSGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRAD 242
P + +LYVG L P V E L F GP+AS+++ + RR +V F N D
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR---DAVTRRSLGYAYVNFHNMED 133
Query: 243 GQAAKDEMQGVVVYEYELKIGWGK 266
G+ A DE+ ++ +I W +
Sbjct: 134 GEKALDELNYTLIKGRPCRIMWSQ 157
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T N+++ NL P +D L TF FG I S K+ +E + GFV F +
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV----DELGNAKGYGFVHFDSVESAN 222
Query: 245 AAKDEMQGVVVYEYELKIG 263
AA + + G+++ + ++ +G
Sbjct: 223 AAIEHVNGMLLNDKKVYVG 241
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ NL ++ E FG+FG I S+ ++ +++ + R GFV + N Q
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLV----KDQNDKPRGFGFVNYANHECAQK 316
Query: 246 AKDEM 250
A DE+
Sbjct: 317 AVDEL 321
Score = 40.4 bits (93), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NL++ NL +VD+ L F FG I S KIM +E+ + + GFV + +
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT----DEQGKSKGFGFVCYTTPEEA 417
Query: 244 QAAKDEM 250
A EM
Sbjct: 418 NKAVTEM 424
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DG+ ++VG + P V + L + F +FG + SVKI + CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---------PVGKGCGFV 361
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F +R + A + + G V+ + +++ WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
Score = 37.7 bits (86), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 188 LYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+LSP V + L TF R+ + S K++ + R + GFV F + + A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVV---IDSNTGRSKGYGFVRFGDENERSRA 260
Query: 247 KDEMQGVVVYEYELKIGWGKSVALPSQAL 275
EM G ++++G +A P +A+
Sbjct: 261 LTEMNGAYCSNRQMRVG----IATPKRAI 285
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DD L+VG+L +DE +L F G ++SVK++ + + GFV
Sbjct: 102 GSGDD----VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVI---RNKLTSQSEGYGFV 154
Query: 236 AFMNRADGQAAKDEMQGVVV 255
F++RA + G V+
Sbjct: 155 EFLSRAAAEEVLQNYSGSVM 174
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
+ DP T ++VG L P V E L + F +G + VKI+ + CGFV F
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---------AGKRCGFVQFGT 326
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKS 267
RA + A + G + +++ WG+S
Sbjct: 327 RASAEQALSSLNGTQLGGQSIRLSWGRS 354
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQG 252
A DEM G
Sbjct: 247 AVDEMNG 253
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQG 252
A DEM G
Sbjct: 247 AVDEMNG 253
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q8CH02|SUGP1_MOUSE SURP and G-patch domain-containing protein 1 OS=Mus musculus
GN=Sugp1 PE=1 SV=1
Length = 643
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 378
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 173 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 230
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 324 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 383
V PPED +++ + LA ++ DGG E ++ R N F+FL++ S+ + YY +L
Sbjct: 251 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLD 310
Query: 384 SF 385
F
Sbjct: 311 EF 312
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
G+ + DP T ++VG + V E+ L FG+FG + VKI + CGFV
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---------PAGKRCGFV 318
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
+ NRA + A + G + +++ WG+S
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 241
+L++G+L P +DEN+L+ FG G + K++ ++ GF+ F+N A
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVI---RNKQNGYSEGYGFIEFVNHA 132
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
+LYVG+L P E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
D DP T ++VG L V ++ L FG+FG + VKI + CGFV + N
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---------PPGKRCGFVQYAN 304
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKS 267
+A + A + G + +++ WG+S
Sbjct: 305 KASAEHALSVLNGTQLGGQSIRLSWGRS 332
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 188 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+L+P+V + L TF +G + K++ RT R + GFV F + + A
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTT---GRSKGYGFVRFADENEQMRA 212
Query: 247 KDEMQGVVVYEYELKIGWGKSVALPSQALPAPP 279
EM G ++IG A ALP P
Sbjct: 213 MTEMNGQYCSTRPMRIG----PAANKNALPMQP 241
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++GNLS D + + F + G + SV+I T E + + G+V F N D + A
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIP---THPETEQPKGFGYVQFSNMEDAKKAL 325
Query: 248 DEMQGVVV 255
D +QG +
Sbjct: 326 DALQGEYI 333
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query: 912 RDRERESDLDRDRERHRDRDRAHDFESERGRER-REKSGSRERD---DHDRDRGRDRDRD 967
+DR++ + DRD+ R +DRD+ + + ++ RE+ R+K ++R+ + DRD+GR++DRD
Sbjct: 840 KDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRD 899
Query: 968 R 968
+
Sbjct: 900 K 900
Score = 37.4 bits (85), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 44/62 (70%), Gaps = 4/62 (6%)
Query: 912 RDRERESDLDRDRERHRDRDRAHDFESERGRER---REKSGSRERDDHDRDRGRDRDRDR 968
+DR++ + DRD+ R +DR++ + + ++GRE+ +E+ +RE+ D +++R +DRD++R
Sbjct: 864 KDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREK-DQEKERLKDRDKER 922
Query: 969 RR 970
+
Sbjct: 923 EK 924
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 921 DRDRERHRDRDRAHDFESERGRERREKSGSRERDDHDRDRGRDRDRDRRR 970
DRD+E + R++ D E E+GRE+ + + + DRD+ R++DRD+ R
Sbjct: 805 DRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVR 854
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 898 QSQSESPPPRKSSIRDRERESDLDRDRERHRDRDRAHDFESERGRERREKSGSRERDDHD 957
+ Q +S P R+S RD ERE+ +DRER + RD+ + +SE R R++ G + ++
Sbjct: 30 EDQLDSKPKRES--RDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKE-RS 86
Query: 958 RDRGRDRDRDRRRR 971
RD+ RD R+R R
Sbjct: 87 RDKDRDH-RERHHR 99
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T +++ + +V E+FL F RFG + V I R R V + + Q
Sbjct: 733 TNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSI---------DRNRQLALVLYDQVQNAQ 783
Query: 245 AAKDEMQGVVVYEYELKIGWG 265
AA +M+G ++ +L++ +
Sbjct: 784 AAVKDMRGTILRRKKLQVDFA 804
>sp|P0C196|PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1
Length = 551
Score = 36.6 bits (83), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 172 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 231
G LP F + P L+V L+P + L F RFG I S +++ + + +
Sbjct: 250 GDLP--FAEIRPPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQY-- 305
Query: 232 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
F+ F + D + A +MQ V+V + + + + +SV+
Sbjct: 306 -AFIEFDKKDDAERAYFKMQNVLVDDRRIWVDFSQSVS 342
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 12/59 (20%)
Query: 912 RDRERESDLDRDRERHRDRDRAHDFESERGRERREKSGSRERDDHDRDRGRDRDRDRRR 970
R+RER D DRD+++ RDR++ E ER RE+ DR+R ++R+RD+ R
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKEREREK------------DRNREKERERDKDR 250
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR 240
GDP T L+V L+ + E+ + R F +GPI V ++ T++ + + F+ +M+
Sbjct: 134 GDPYKT-LFVSRLNYESSESKIKREFESYGPIKRVHLV---TDQLTNKPKGYAFIEYMHT 189
Query: 241 ADGQAAKDEMQGVVV 255
D +AA + G +
Sbjct: 190 RDMKAAYKQADGQKI 204
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 24/83 (28%)
Query: 912 RDRERESDLDRDRERHRDRDRAHDFESERGRERREK-----------------------S 948
RD+E+ + DRDR R DRDR D E E+ R R ++
Sbjct: 197 RDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD 256
Query: 949 GSRERDDHDRDRGRDRDRDRRRR 971
G +E++ +DR RD+ +DR RR
Sbjct: 257 GGKEKE-RQKDRDRDKGKDRERR 278
>sp|P0CP88|PPIL4_CRYNJ Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=CYP6 PE=3 SV=1
Length = 504
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 172 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 231
G LP F P L+V L+P + L F RFG I S +++ + + +
Sbjct: 234 GDLP--FAAVRPPENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQY-- 289
Query: 232 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
F+ F R + A +MQ V+V + + + + +SVA
Sbjct: 290 -AFIEFDEREAAEQAYFKMQNVLVDDRRIWVDFSQSVA 326
>sp|P0CP89|PPIL4_CRYNB Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=CYP6 PE=3 SV=1
Length = 504
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 172 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 231
G LP F P L+V L+P + L F RFG I S +++ + + +
Sbjct: 234 GDLP--FAAVRPPENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQY-- 289
Query: 232 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
F+ F R + A +MQ V+V + + + + +SVA
Sbjct: 290 -AFIEFDEREAAEQAYFKMQNVLVDDRRIWVDFSQSVA 326
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 910 SIRDRERESDLDRDRERHR----DRDRAHDFESERGR 942
S RDR RE D D+DRERHR DR+R D ES R R
Sbjct: 36 SSRDRVRERDEDKDRERHRRHGEDRERYRDRESVRER 72
>sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1
Length = 427
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 913 DRERESD--LDRDRE-RHRDRDRAHDF-ESERGRERREKSGSRERDDH-DRDRGRDRDRD 967
DRERE D DRDR+ RH +DR+ + + E+ R R SR+R DH RD+DR
Sbjct: 369 DRERERDREADRDRQRRHHSKDRSSGYSDKEKSRHR----SSRDRGDHYSSHSSRDKDRH 424
Query: 968 RRR 970
RR+
Sbjct: 425 RRQ 427
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,927,474
Number of Sequences: 539616
Number of extensions: 18133411
Number of successful extensions: 92557
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 1360
Number of HSP's that attempted gapping in prelim test: 60839
Number of HSP's gapped (non-prelim): 16444
length of query: 973
length of database: 191,569,459
effective HSP length: 127
effective length of query: 846
effective length of database: 123,038,227
effective search space: 104090340042
effective search space used: 104090340042
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)