Query 002060
Match_columns 973
No_of_seqs 719 out of 3123
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0151 Predicted splicing reg 100.0 1E-146 2E-151 1242.6 45.1 787 1-871 3-794 (877)
2 smart00582 RPR domain present 99.9 2.6E-22 5.7E-27 193.8 8.6 119 451-581 2-120 (121)
3 KOG4368 Predicted RNA binding 99.7 8.1E-16 1.8E-20 174.0 23.0 133 445-588 100-238 (757)
4 KOG2669 Regulator of nuclear m 99.7 2.6E-17 5.5E-22 180.0 10.5 129 444-585 2-130 (325)
5 PLN03134 glycine-rich RNA-bind 99.6 4.2E-14 9E-19 141.2 14.4 82 184-268 33-114 (144)
6 cd03562 CID CID (CTD-Interacti 99.5 9.9E-15 2.2E-19 139.8 8.0 108 451-574 4-114 (114)
7 PF01805 Surp: Surp module; I 99.5 8E-15 1.7E-19 122.5 0.6 54 332-385 1-54 (55)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 9.6E-13 2.1E-17 149.1 13.9 81 185-268 269-349 (352)
9 KOG0148 Apoptosis-promoting RN 99.4 8E-13 1.7E-17 139.1 11.7 138 114-270 100-240 (321)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 9E-13 2E-17 149.3 10.8 80 185-267 3-82 (352)
11 smart00648 SWAP Suppressor-of- 99.4 7E-14 1.5E-18 116.4 0.8 52 334-386 2-53 (54)
12 TIGR01659 sex-lethal sex-letha 99.4 1.8E-12 3.8E-17 146.9 11.1 85 180-267 102-186 (346)
13 PF00076 RRM_1: RNA recognitio 99.4 2.3E-12 4.9E-17 110.8 9.2 70 188-261 1-70 (70)
14 KOG0149 Predicted RNA-binding 99.3 4.7E-12 1E-16 131.7 10.4 83 181-267 8-90 (247)
15 TIGR01659 sex-lethal sex-letha 99.3 3.4E-11 7.4E-16 136.5 14.2 84 184-270 192-277 (346)
16 KOG0122 Translation initiation 99.3 2E-11 4.4E-16 127.4 11.1 82 184-268 188-269 (270)
17 KOG0125 Ataxin 2-binding prote 99.3 2.8E-11 6.1E-16 130.6 11.7 79 185-268 96-174 (376)
18 KOG0113 U1 small nuclear ribon 99.3 2.1E-11 4.6E-16 130.2 10.4 82 184-268 100-181 (335)
19 KOG0121 Nuclear cap-binding pr 99.2 1E-11 2.3E-16 117.9 7.0 79 184-265 35-113 (153)
20 TIGR01645 half-pint poly-U bin 99.2 2.9E-11 6.3E-16 144.3 12.2 82 184-268 203-284 (612)
21 PLN03120 nucleic acid binding 99.2 4.1E-11 8.8E-16 128.6 11.5 80 185-271 4-83 (260)
22 PLN03213 repressor of silencin 99.2 3.5E-11 7.5E-16 134.7 9.4 78 184-268 9-88 (759)
23 KOG4207 Predicted splicing fac 99.2 2.6E-11 5.7E-16 123.5 7.4 83 185-270 13-95 (256)
24 TIGR01645 half-pint poly-U bin 99.2 3.8E-11 8.2E-16 143.4 9.9 78 185-265 107-184 (612)
25 KOG0107 Alternative splicing f 99.2 3.1E-11 6.7E-16 120.5 7.6 78 184-269 9-86 (195)
26 PF14259 RRM_6: RNA recognitio 99.2 1.2E-10 2.6E-15 101.1 9.4 70 188-261 1-70 (70)
27 KOG0111 Cyclophilin-type pepti 99.2 2.3E-11 5E-16 124.7 5.5 85 184-271 9-93 (298)
28 TIGR01622 SF-CC1 splicing fact 99.2 1.3E-10 2.7E-15 136.7 12.3 83 183-268 184-266 (457)
29 PF04818 CTD_bind: RNA polymer 99.1 4.9E-12 1.1E-16 108.9 -0.8 64 500-573 1-64 (64)
30 KOG0145 RNA-binding protein EL 99.1 1.4E-10 3.1E-15 121.5 9.3 86 180-268 36-121 (360)
31 TIGR01628 PABP-1234 polyadenyl 99.1 3E-10 6.4E-15 137.2 13.7 81 183-267 283-363 (562)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.3E-10 5E-15 136.2 12.6 83 184-269 294-376 (509)
33 TIGR01628 PABP-1234 polyadenyl 99.1 1.4E-10 3.1E-15 139.9 10.4 78 186-266 1-78 (562)
34 KOG0126 Predicted RNA-binding 99.1 2.6E-11 5.7E-16 121.4 1.3 87 182-271 32-118 (219)
35 PLN03121 nucleic acid binding 99.1 7E-10 1.5E-14 117.5 11.4 76 184-266 4-79 (243)
36 TIGR01648 hnRNP-R-Q heterogene 99.1 3.6E-10 7.8E-15 134.9 10.2 78 184-265 57-135 (578)
37 smart00362 RRM_2 RNA recogniti 99.1 8.2E-10 1.8E-14 93.6 9.6 72 187-263 1-72 (72)
38 PF12243 CTK3: CTD kinase subu 99.1 2.7E-10 5.8E-15 112.4 7.3 131 446-585 5-136 (139)
39 KOG0148 Apoptosis-promoting RN 99.0 2.5E-10 5.4E-15 120.6 7.0 81 185-268 62-142 (321)
40 COG0724 RNA-binding proteins ( 99.0 7.3E-10 1.6E-14 117.5 10.0 80 185-267 115-194 (306)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 9.3E-10 2E-14 130.6 11.9 81 182-270 272-353 (481)
42 TIGR01622 SF-CC1 splicing fact 99.0 8.9E-10 1.9E-14 129.6 11.0 80 184-267 88-167 (457)
43 KOG0124 Polypyrimidine tract-b 99.0 2.7E-10 5.9E-15 123.8 5.5 76 185-263 113-188 (544)
44 KOG0130 RNA-binding protein RB 99.0 6.7E-10 1.5E-14 106.5 7.2 83 184-269 71-153 (170)
45 TIGR01648 hnRNP-R-Q heterogene 99.0 1.1E-09 2.3E-14 130.9 10.6 74 185-269 233-308 (578)
46 KOG0117 Heterogeneous nuclear 99.0 1.2E-09 2.7E-14 122.1 10.1 80 183-265 81-161 (506)
47 KOG0131 Splicing factor 3b, su 99.0 4.4E-10 9.4E-15 113.0 5.6 79 185-266 9-87 (203)
48 smart00360 RRM RNA recognition 99.0 1.8E-09 3.9E-14 91.1 8.2 71 190-263 1-71 (71)
49 KOG0114 Predicted RNA-binding 99.0 2.1E-09 4.5E-14 99.1 8.9 75 184-264 17-91 (124)
50 KOG0108 mRNA cleavage and poly 99.0 1.1E-09 2.3E-14 126.5 8.5 81 186-269 19-99 (435)
51 KOG0145 RNA-binding protein EL 98.9 3.2E-09 7E-14 111.5 10.1 80 184-266 277-356 (360)
52 cd00590 RRM RRM (RNA recogniti 98.9 5.7E-09 1.2E-13 88.9 9.7 74 187-264 1-74 (74)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 3.6E-09 7.8E-14 125.6 10.9 75 185-268 2-78 (481)
54 KOG0146 RNA-binding protein ET 98.9 1.2E-09 2.6E-14 115.0 5.4 86 179-267 279-364 (371)
55 KOG0105 Alternative splicing f 98.9 2.3E-09 5E-14 107.8 6.7 79 184-268 5-83 (241)
56 KOG0117 Heterogeneous nuclear 98.9 5.5E-09 1.2E-13 117.0 9.5 74 185-269 259-332 (506)
57 KOG0415 Predicted peptidyl pro 98.9 7E-09 1.5E-13 112.9 9.4 85 182-269 236-320 (479)
58 KOG0109 RNA-binding protein LA 98.8 3.2E-09 6.9E-14 113.4 6.3 73 186-269 3-75 (346)
59 PF13893 RRM_5: RNA recognitio 98.8 1.6E-08 3.5E-13 84.3 9.0 56 202-265 1-56 (56)
60 KOG0153 Predicted RNA-binding 98.8 9.2E-09 2E-13 112.4 9.1 80 179-267 222-302 (377)
61 KOG0131 Splicing factor 3b, su 98.8 4.4E-09 9.6E-14 105.9 5.4 83 184-269 95-178 (203)
62 KOG0144 RNA-binding protein CU 98.8 7.9E-09 1.7E-13 115.3 7.9 87 179-268 28-117 (510)
63 KOG0147 Transcriptional coacti 98.8 5.5E-09 1.2E-13 119.9 6.6 78 188-268 281-358 (549)
64 KOG0127 Nucleolar protein fibr 98.8 1.6E-08 3.4E-13 115.6 9.4 81 182-265 289-375 (678)
65 KOG0144 RNA-binding protein CU 98.8 5.8E-09 1.3E-13 116.3 5.1 80 185-268 124-206 (510)
66 KOG0127 Nucleolar protein fibr 98.8 1.2E-08 2.5E-13 116.5 7.5 83 185-270 5-87 (678)
67 KOG0132 RNA polymerase II C-te 98.7 1.5E-08 3.2E-13 119.7 7.5 76 185-269 421-496 (894)
68 smart00361 RRM_1 RNA recogniti 98.7 5E-08 1.1E-12 85.4 7.6 63 199-262 2-69 (70)
69 KOG1847 mRNA splicing factor [ 98.6 2.6E-07 5.6E-12 107.0 13.7 59 322-381 178-236 (878)
70 KOG0109 RNA-binding protein LA 98.6 3.6E-08 7.8E-13 105.5 6.2 74 184-268 77-150 (346)
71 KOG4206 Spliceosomal protein s 98.6 1E-07 2.2E-12 99.6 7.7 77 186-268 10-90 (221)
72 TIGR01642 U2AF_lg U2 snRNP aux 98.5 2.2E-07 4.8E-12 110.8 10.2 84 182-265 406-499 (509)
73 KOG4661 Hsp27-ERE-TATA-binding 98.5 5.5E-07 1.2E-11 103.0 9.8 82 185-269 405-486 (940)
74 KOG4208 Nucleolar RNA-binding 98.4 5.6E-07 1.2E-11 92.8 7.8 77 185-264 49-126 (214)
75 KOG0132 RNA polymerase II C-te 98.4 1.7E-05 3.8E-10 94.5 21.0 132 447-589 3-140 (894)
76 KOG0124 Polypyrimidine tract-b 98.4 9.1E-07 2E-11 96.9 8.1 81 185-268 210-290 (544)
77 KOG0123 Polyadenylate-binding 98.4 7E-07 1.5E-11 102.3 7.6 75 188-268 79-153 (369)
78 KOG0110 RNA-binding protein (R 98.3 8.5E-07 1.8E-11 104.8 8.1 81 186-266 516-596 (725)
79 KOG0110 RNA-binding protein (R 98.3 4.9E-07 1.1E-11 106.8 5.4 82 184-268 612-693 (725)
80 KOG0533 RRM motif-containing p 98.3 1.9E-06 4.1E-11 92.7 8.8 82 184-269 82-163 (243)
81 KOG0123 Polyadenylate-binding 98.3 1.3E-06 2.8E-11 100.2 7.8 72 186-266 2-73 (369)
82 KOG1457 RNA binding protein (c 98.3 3.8E-06 8.2E-11 87.3 10.1 84 185-270 34-120 (284)
83 KOG1548 Transcription elongati 98.2 5.9E-06 1.3E-10 90.8 9.7 87 178-268 127-221 (382)
84 KOG4212 RNA-binding protein hn 98.2 5E-06 1.1E-10 93.2 9.2 76 185-264 44-120 (608)
85 KOG0146 RNA-binding protein ET 98.2 3.2E-06 7E-11 89.6 6.6 80 185-268 19-101 (371)
86 KOG4212 RNA-binding protein hn 98.1 4.3E-06 9.4E-11 93.7 7.3 75 182-264 533-607 (608)
87 KOG0226 RNA-binding proteins [ 98.0 4.2E-06 9.1E-11 88.6 4.9 77 185-264 190-266 (290)
88 KOG4209 Splicing factor RNPS1, 98.0 8.9E-06 1.9E-10 87.5 7.4 82 183-268 99-180 (231)
89 KOG4205 RNA-binding protein mu 98.0 5.2E-06 1.1E-10 92.6 4.5 81 184-268 5-85 (311)
90 KOG0106 Alternative splicing f 98.0 5.6E-06 1.2E-10 87.4 4.2 72 186-268 2-73 (216)
91 KOG4205 RNA-binding protein mu 97.8 2E-05 4.2E-10 88.1 5.7 82 184-269 96-177 (311)
92 KOG0116 RasGAP SH3 binding pro 97.8 3.5E-05 7.7E-10 89.1 6.9 79 185-267 288-366 (419)
93 KOG4454 RNA binding protein (R 97.7 1.1E-05 2.5E-10 83.7 1.8 75 185-264 9-83 (267)
94 KOG4660 Protein Mei2, essentia 97.7 1.8E-05 4E-10 91.8 3.4 71 183-261 73-143 (549)
95 KOG1190 Polypyrimidine tract-b 97.6 0.0002 4.4E-09 80.3 9.9 78 185-270 297-375 (492)
96 KOG0151 Predicted splicing reg 97.5 0.00024 5.2E-09 84.2 8.6 23 820-842 700-722 (877)
97 KOG1457 RNA binding protein (c 97.5 9.3E-05 2E-09 77.2 4.1 67 183-256 208-274 (284)
98 PF04059 RRM_2: RNA recognitio 97.4 0.00097 2.1E-08 62.4 9.0 80 186-268 2-87 (97)
99 PF11608 Limkain-b1: Limkain b 97.3 0.00072 1.6E-08 61.0 7.5 67 186-265 3-74 (90)
100 KOG4206 Spliceosomal protein s 97.3 0.00067 1.5E-08 71.5 8.3 80 179-266 140-220 (221)
101 KOG0120 Splicing factor U2AF, 97.3 0.00027 5.9E-09 82.9 5.8 81 185-268 289-369 (500)
102 KOG1995 Conserved Zn-finger pr 97.3 0.00024 5.3E-09 79.1 4.4 87 182-268 63-154 (351)
103 KOG4676 Splicing factor, argin 97.2 0.00013 2.9E-09 81.3 2.1 76 187-263 9-84 (479)
104 COG5175 MOT2 Transcriptional r 97.2 0.0012 2.6E-08 72.5 9.3 82 185-267 114-202 (480)
105 KOG0147 Transcriptional coacti 97.1 0.00022 4.7E-09 83.0 2.3 81 183-267 177-257 (549)
106 KOG4676 Splicing factor, argin 96.9 0.00031 6.8E-09 78.4 0.9 7 188-194 55-61 (479)
107 KOG4210 Nuclear localization s 96.6 0.0012 2.6E-08 73.4 3.1 80 185-268 185-264 (285)
108 KOG0106 Alternative splicing f 96.5 0.0017 3.6E-08 69.0 3.2 68 184-262 98-165 (216)
109 KOG0112 Large RNA-binding prot 96.4 0.0084 1.8E-07 73.5 8.7 81 184-273 454-536 (975)
110 KOG1855 Predicted RNA-binding 96.3 0.0038 8.2E-08 70.9 4.6 78 177-254 223-310 (484)
111 KOG1190 Polypyrimidine tract-b 96.2 0.0093 2E-07 67.4 6.6 80 181-267 410-490 (492)
112 KOG1456 Heterogeneous nuclear 96.1 0.018 4E-07 64.4 8.7 78 184-269 119-200 (494)
113 PF08777 RRM_3: RNA binding mo 96.1 0.011 2.4E-07 56.2 5.8 59 186-253 2-60 (105)
114 KOG3152 TBP-binding protein, a 96.1 0.0035 7.5E-08 67.2 2.5 73 184-259 73-157 (278)
115 KOG0120 Splicing factor U2AF, 96.0 0.016 3.6E-07 68.4 8.1 64 201-264 425-488 (500)
116 KOG1456 Heterogeneous nuclear 96.0 0.12 2.7E-06 58.0 14.0 82 181-270 283-365 (494)
117 KOG2888 Putative RNA binding p 95.9 0.0026 5.6E-08 69.9 0.7 31 464-494 65-97 (453)
118 KOG0112 Large RNA-binding prot 95.8 0.0027 5.9E-08 77.6 0.6 95 182-280 369-463 (975)
119 KOG4211 Splicing factor hnRNP- 95.7 0.044 9.6E-07 63.6 9.8 77 185-268 10-86 (510)
120 KOG4307 RNA binding protein RB 95.5 0.0025 5.5E-08 75.6 -1.2 67 781-863 24-90 (944)
121 PF14605 Nup35_RRM_2: Nup53/35 95.4 0.031 6.7E-07 46.6 5.1 52 186-247 2-53 (53)
122 KOG2416 Acinus (induces apopto 95.3 0.04 8.7E-07 65.0 7.3 77 183-268 442-522 (718)
123 KOG0129 Predicted RNA-binding 95.1 0.043 9.4E-07 64.1 7.0 64 185-251 259-327 (520)
124 KOG4368 Predicted RNA binding 95.0 0.033 7.1E-07 65.4 5.6 36 505-540 221-256 (757)
125 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.11 2.5E-06 49.0 8.1 79 185-266 6-90 (100)
126 KOG0796 Spliceosome subunit [R 94.6 0.016 3.4E-07 64.4 1.8 12 831-842 214-225 (319)
127 KOG4307 RNA binding protein RB 94.6 0.087 1.9E-06 63.2 7.9 76 185-264 867-943 (944)
128 KOG4849 mRNA cleavage factor I 94.6 0.044 9.6E-07 60.8 5.1 79 185-266 80-161 (498)
129 KOG1548 Transcription elongati 94.4 0.11 2.3E-06 58.2 7.5 73 185-264 265-348 (382)
130 PF08312 cwf21: cwf21 domain; 94.4 0.11 2.3E-06 42.2 5.5 40 826-866 5-44 (46)
131 KOG2314 Translation initiation 94.1 0.097 2.1E-06 61.6 6.7 74 186-263 59-139 (698)
132 PF08952 DUF1866: Domain of un 94.1 0.21 4.5E-06 50.2 8.1 54 201-266 52-105 (146)
133 KOG0129 Predicted RNA-binding 94.0 0.1 2.3E-06 61.0 6.7 63 184-249 369-432 (520)
134 KOG0796 Spliceosome subunit [R 93.8 0.086 1.9E-06 58.7 5.3 17 821-837 218-234 (319)
135 PF04847 Calcipressin: Calcipr 93.7 0.18 3.9E-06 52.8 7.2 64 198-270 8-73 (184)
136 KOG4211 Splicing factor hnRNP- 93.6 0.13 2.9E-06 59.8 6.7 77 185-265 103-179 (510)
137 KOG2193 IGF-II mRNA-binding pr 93.4 0.067 1.4E-06 60.9 3.7 72 186-266 2-74 (584)
138 KOG0128 RNA-binding protein SA 92.9 0.096 2.1E-06 64.4 4.3 80 185-268 736-815 (881)
139 PF02037 SAP: SAP domain; Int 92.3 0.16 3.4E-06 38.7 3.3 32 638-669 2-33 (35)
140 KOG1365 RNA-binding protein Fu 92.0 0.57 1.2E-05 53.1 8.5 77 185-265 280-359 (508)
141 KOG0128 RNA-binding protein SA 91.8 0.015 3.3E-07 71.1 -4.2 69 185-257 667-735 (881)
142 PF15023 DUF4523: Protein of u 91.6 0.49 1.1E-05 47.1 6.6 73 182-265 83-159 (166)
143 KOG1996 mRNA splicing factor [ 90.9 0.48 1E-05 52.0 6.4 63 200-264 301-363 (378)
144 PF08675 RNA_bind: RNA binding 90.5 1.1 2.4E-05 40.9 7.2 57 184-251 7-63 (87)
145 smart00513 SAP Putative DNA-bi 90.4 0.39 8.5E-06 36.4 3.8 33 638-670 2-34 (35)
146 KOG0835 Cyclin L [General func 89.8 0.55 1.2E-05 52.5 5.8 18 633-650 206-223 (367)
147 KOG2202 U2 snRNP splicing fact 89.4 0.16 3.5E-06 54.9 1.3 61 201-265 84-145 (260)
148 KOG2068 MOT2 transcription fac 89.3 0.16 3.4E-06 57.0 1.1 82 186-268 78-163 (327)
149 KOG1847 mRNA splicing factor [ 88.5 0.24 5.2E-06 59.1 2.0 54 326-382 420-473 (878)
150 cd00197 VHS_ENTH_ANTH VHS, ENT 87.5 1 2.2E-05 43.2 5.4 100 460-568 16-115 (115)
151 KOG4246 Predicted DNA-binding 87.3 0.28 6.1E-06 60.0 1.6 12 776-787 252-263 (1194)
152 KOG2135 Proteins containing th 87.2 0.47 1E-05 55.2 3.3 75 184-268 371-446 (526)
153 KOG0115 RNA-binding protein p5 86.8 0.66 1.4E-05 50.3 3.8 64 186-253 32-95 (275)
154 KOG2253 U1 snRNP complex, subu 85.7 0.99 2.1E-05 54.6 5.0 71 182-264 37-107 (668)
155 KOG4574 RNA-binding protein (c 84.1 1.2 2.6E-05 55.1 4.7 77 185-270 298-376 (1007)
156 KOG4285 Mitotic phosphoprotein 83.6 2.9 6.3E-05 46.4 7.0 63 186-259 198-260 (350)
157 KOG0105 Alternative splicing f 82.9 2.9 6.2E-05 43.5 6.2 62 185-256 115-176 (241)
158 KOG0113 U1 small nuclear ribon 82.7 1.8 3.8E-05 48.0 4.9 15 552-566 74-88 (335)
159 KOG2548 SWAP mRNA splicing reg 82.0 0.65 1.4E-05 54.5 1.4 20 640-659 207-228 (653)
160 KOG2548 SWAP mRNA splicing reg 79.3 0.66 1.4E-05 54.5 0.3 18 613-630 200-217 (653)
161 PF03880 DbpA: DbpA RNA bindin 78.8 9.1 0.0002 34.0 7.4 66 187-265 2-74 (74)
162 PF03467 Smg4_UPF3: Smg-4/UPF3 78.4 6 0.00013 41.3 7.0 86 184-270 6-100 (176)
163 KOG2071 mRNA cleavage and poly 76.7 4.4 9.5E-05 49.0 6.1 103 449-567 7-110 (579)
164 PF11767 SET_assoc: Histone ly 76.5 9.5 0.00021 33.5 6.6 55 196-262 11-65 (66)
165 PF10309 DUF2414: Protein of u 74.1 12 0.00025 32.6 6.3 54 185-250 5-62 (62)
166 KOG1365 RNA-binding protein Fu 73.2 9.5 0.00021 43.7 7.2 72 185-261 161-236 (508)
167 KOG4019 Calcineurin-mediated s 71.0 10 0.00022 39.5 6.3 79 185-272 10-94 (193)
168 PF07576 BRAP2: BRCA1-associat 70.4 27 0.00059 33.7 8.7 78 186-268 14-95 (110)
169 KOG2318 Uncharacterized conser 68.0 11 0.00024 45.4 6.6 81 184-264 173-304 (650)
170 KOG4660 Protein Mei2, essentia 64.3 11 0.00023 45.3 5.5 81 185-268 388-473 (549)
171 KOG4210 Nuclear localization s 62.8 4.4 9.5E-05 45.5 2.0 82 184-268 87-168 (285)
172 KOG0965 Predicted RNA-binding 62.1 2.1 4.6E-05 52.3 -0.6 59 328-386 528-586 (988)
173 KOG1049 Polyadenylation factor 61.0 6.7 0.00014 46.9 3.1 7 781-787 348-354 (538)
174 KOG2591 c-Mpl binding protein, 60.2 12 0.00027 44.7 5.0 69 184-262 174-246 (684)
175 KOG1902 Putative signal transd 59.5 4.7 0.0001 45.4 1.4 16 198-213 100-115 (441)
176 KOG2193 IGF-II mRNA-binding pr 58.7 1.6 3.5E-05 50.1 -2.3 74 185-264 80-153 (584)
177 KOG0415 Predicted peptidyl pro 57.1 2.7 5.8E-05 47.5 -0.9 12 531-542 255-266 (479)
178 KOG4454 RNA binding protein (R 51.9 3.6 7.8E-05 43.9 -0.9 69 182-254 77-149 (267)
179 PF00790 VHS: VHS domain; Int 49.5 32 0.00069 34.3 5.5 83 475-570 36-120 (140)
180 KOG2891 Surface glycoprotein [ 46.8 5 0.00011 43.9 -0.8 85 186-270 150-270 (445)
181 PF01417 ENTH: ENTH domain; I 42.9 28 0.0006 34.0 3.8 97 460-565 19-118 (125)
182 KOG0804 Cytoplasmic Zn-finger 42.7 58 0.0013 38.5 6.7 68 185-257 74-142 (493)
183 smart00288 VHS Domain present 35.8 43 0.00094 33.2 3.9 80 476-568 32-111 (133)
184 cd03561 VHS VHS domain family; 32.7 81 0.0018 31.1 5.3 81 476-568 32-112 (133)
185 KOG1924 RhoA GTPase effector D 28.5 1.1E+02 0.0023 38.8 6.1 46 442-490 695-742 (1102)
186 KOG2045 5'-3' exonuclease XRN1 25.1 60 0.0013 41.5 3.3 45 502-546 30-75 (1493)
187 COG0724 RNA-binding proteins ( 23.2 79 0.0017 33.0 3.5 38 182-219 222-259 (306)
188 KOG4849 mRNA cleavage factor I 22.6 8.1 0.00017 43.7 -4.2 15 29-43 5-19 (498)
189 KOG4410 5-formyltetrahydrofola 22.4 1.1E+02 0.0025 34.1 4.4 55 181-243 326-380 (396)
190 KOG4483 Uncharacterized conser 21.5 1.1E+02 0.0023 35.8 4.1 55 185-248 391-445 (528)
No 1
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=100.00 E-value=9.6e-147 Score=1242.55 Aligned_cols=787 Identities=50% Similarity=0.784 Sum_probs=693.4
Q ss_pred CCCcCccccCCchhhchHHHHHhhcccHHHHHHHHHHHHHhhcCCCCCCCCcceeccccCCCC-cccc-ccCCCCCCCcc
Q 002060 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGGTIDPND-KLKE-AEGEKSKDGVS 78 (973)
Q Consensus 1 ~~~~~~~~kks~f~k~ke~~E~Kkk~ee~eaA~vyeeFv~sF~~~~~~~~~~fvr~g~~~~~~-~~~~-~~~~~~~~~~~ 78 (973)
|.+|++..++.++.++||.+++|||+.+.+||.+|.+||++|.+.+..++|+||+|||++|++ +... +.|+
T Consensus 3 ~~~f~i~~~s~p~~~~re~e~~kkK~~~~~~a~~~~ef~~~f~~~~~~~~k~fv~~gtina~~~r~~~d~~~~------- 75 (877)
T KOG0151|consen 3 LDAFSIGSVSKPKLSKRENEEEKKKEDAGAAARYYQEFVENFPKGDNVGSKTFVEAGTINAAKARRKLDEKGG------- 75 (877)
T ss_pred ccccccccccccchhhhhhHhhhcccchhhHHHHHHHHHHhccCCCCccceeeeeccccccccccccchhhcc-------
Confidence 578999999999999999999999999999999999999999866667789999999999977 3332 2222
Q ss_pred ccCCCCCCCCCCCCCccccCCCChhhhhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCC
Q 002060 79 VPKKGSRYVPSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPS 158 (973)
Q Consensus 79 ~~~~~~~~~ps~~pp~~~~~~~~~~~k~~~~k~k~~~k~K~r~le~F~eElk~~Qeere~r~~~r~~~~~g~~~~~~~~~ 158 (973)
+.++.++|++.+|+.....+++.+. ..+|+++++|++|||.|+|||+++||+||+|++.+.+.. .....++++
T Consensus 76 --k~k~~~~p~~~~~~~~~~~~~~kk~---~~kk~~~k~K~snle~FkeELkr~QE~Re~R~~~r~~~~--~~~~d~~~s 148 (877)
T KOG0151|consen 76 --KKKSTEVPSFVEPPTRLLVKDPKKG---PLKKKQEKKKKSNLELFKEELKRIQEEREERHKDRHHLE--DPQSDSAVS 148 (877)
T ss_pred --cccCCCCCCcCCCcchhcccCCCCC---cchhhhcccchhhHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCcchh
Confidence 2366788999888876644443332 445556677889999999999999999999999887653 222345778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeC
Q 002060 159 SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238 (973)
Q Consensus 159 sr~~~~~~~~~~~~~a~gs~d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~ 238 (973)
+++.++|..+.+++ .+|++|++||.+||||||||++.|+++.|...|++||+|.+|+|||||++.+..+.+.||||.||
T Consensus 149 ~r~~~~p~~~~~s~-~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 149 SRFDPLPSRFDPSG-RPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFM 227 (877)
T ss_pred hccCCCccccCCCC-CCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeeh
Confidence 89999998887777 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCcEECCeEEEEEeecCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCCCCCcccccCCC
Q 002060 239 NRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPN 318 (973)
Q Consensus 239 ~~~dA~~Ai~~lnG~~i~Gr~LkV~~ak~~~~p~~~~~~ppp~~~~~~~~~g~~~~~~gp~gpP~~~~p~~~~e~~~~~~ 318 (973)
++.+|++|+..|+|..++++.|+++||+++++|+.|++.||++++.....++...++.+.++| +...|+++.+++.+++
T Consensus 228 nR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p-~~~~pn~N~e~~~~ed 306 (877)
T KOG0151|consen 228 NRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGP-PKSLPNQNAELVNTED 306 (877)
T ss_pred hhhhHHHHHHHhcceeeeeeeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCCc-cccCCCccccccCcCC
Confidence 999999999999999999999999999999999999999999998887778777777766666 5678899999999999
Q ss_pred CCcccccCCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeeccCCccccccCCc
Q 002060 319 VPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEP 398 (973)
Q Consensus 319 ~~~v~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~~gd~~~~w~~~p 398 (973)
+..+.|++|.|.+++++||+||+||+++|++||+|||+++.+||+|+|||+++++.|+||+||||+|+||||++.|+++|
T Consensus 307 v~~i~Vvip~d~~L~~vidrM~~fV~~egp~fea~im~re~~nplF~flfen~s~~htyyrwklySilQgdT~~ewr~e~ 386 (877)
T KOG0151|consen 307 VEDILVVIPTDRHLLMVIDRMAEFVVREGPMFEAMIMERERGNPLFSFLFENGSPAHTYYRWKLYSILQGDTPQEWRTEP 386 (877)
T ss_pred ccceeEecCchHHHHHHHHHHHHHHhccCccHHHHHHHhhccChhHHHHHhcCchHHHHHHHHHHHHHcCCCHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccCCCCCCCCCcchhhhccCcccccCCCCCCcCCCCChHHHHHHHHHHHhcccCHHHHHHHHHHHhhcccc
Q 002060 399 FIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADA 478 (973)
Q Consensus 399 f~m~~~g~~w~PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~ 478 (973)
|+||+||++|+||+++.+...++.++...+++.+. ...++.|+..+|++|++||+.|||.|.+|+++|+|||+||++
T Consensus 387 frmfknggrwipppin~~~~~mp~ee~~~t~a~~e---~~~k~~Ltd~qRdklE~liR~LTpEk~sIg~aM~FalenA~a 463 (877)
T KOG0151|consen 387 FRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGE---SEDKGALTDLQRDKLEDLIRGLTPEKSSIGDAMVFALENADA 463 (877)
T ss_pred hhhcccCceecCCCCCcccccCchhhhcccccccc---hhhhcccchHHHHHHHHHHHhcCcccchHHHHHHHHHhhhhh
Confidence 99999999999999999654444444444555442 356789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHH
Q 002060 479 AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKER 558 (973)
Q Consensus 479 a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~k 558 (973)
|.|||+||+++|++.+|++++||++|||||||||||+++|.|||.||+.||..|+.||+.|+.+|++|.|||+++.|+++
T Consensus 464 a~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqR 543 (877)
T KOG0151|consen 464 AGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYRKSFEATLEDIFDDLNDLYRSIGGRIKAEAFKQR 543 (877)
T ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccCcHHHHHHHHHHhccCCCCCCccccccCCCCccccccCCCcc--cccccccchhhHhhhcchhhhhh
Q 002060 559 VLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSED--TCDLSKTNQDTALAMGKGAAIKE 636 (973)
Q Consensus 559 V~~vL~iWe~~~vfp~~~l~~L~~~fl~~~~~~~~~~~~~~~~~~~~e~~~~~~d--~~dg~~l~~~~~~~~~~~~~~~~ 636 (973)
|++||++|++|.|||.+||.+|+++|||. +.+++++++ +.+.+++++.....+ +.||.+++ .+++..+
T Consensus 544 V~kVirvWedW~ifpe~~l~~l~~~Flg~-~~~~~~~~s-e~~~~die~~~~a~~eedldgvple--------~~~agip 613 (877)
T KOG0151|consen 544 VMKVIRVWEDWAIFPEDFLIGLQNTFLGL-NNIVTEKES-EADAPDIENAPLAGNEEDLDGVPLE--------DEDAGIP 613 (877)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhcC-CCCcccccc-cccchhhccCcccCchhhccCCCch--------hhhcCCc
Confidence 99999999999999999999999999994 456678887 899999988877543 45666554 1234557
Q ss_pred hhcCChhHHHHHHHhcCccccCChHHHHHHHhhhhHHHHhhhhhhhhhh-hhhccCCCCCCcCCCCccccccccccCcCC
Q 002060 637 LMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDL-KSAHSQSSSGRYSRGWKETNMEAESMGLSG 715 (973)
Q Consensus 637 ~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (973)
++..|+++|+.+| ++|+..-++.++|+.++.++.+++.+..+++.+.. +++|.++ .+-|.......+++
T Consensus 614 ~~n~pi~eld~~~-l~~dd~ldgipm~~e~~ss~s~~~~~sk~e~vd~~~~~~q~vs-----tskwe~~~~~~~~~---- 683 (877)
T KOG0151|consen 614 LMNTPIDELDGRP-LNLDDDLDGIPMMVETKSSLSDPETPSKWEAVDESFKEGQAVS-----TSKWEHVDDEFEPK---- 683 (877)
T ss_pred cccCchhhhcccc-ccccccccCceeeeeeccccCCCcccccccccCcccccccccc-----hhhhhhcccccccc----
Confidence 8889999999999 99999999999999999999999999999988887 8888873 23587777766766
Q ss_pred CCCcchhhhhcccCCCccCCCCCCCCCchhhhhcccccCCCCCCcccccccCCCchHHHhhccCCCCcccCCCCCCCCCC
Q 002060 716 WNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGD 795 (973)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (973)
.++|.++++ +. .|+ || |||.+++++.. +|+ |+++.|.
T Consensus 684 ~~s~~~~e~---------------------------ed-~~~----k~---~de~~~~~~~~-------~ss-~~~~~d~ 720 (877)
T KOG0151|consen 684 KNSYDEVEE---------------------------ED-NPV----KY---DDEDRDKLRDI-------ESS-GSDNQDE 720 (877)
T ss_pred cccccchhc---------------------------cc-ccc----cc---chhhhHHHhhh-------hhh-ccccccc
Confidence 688888777 11 222 89 88888998876 444 8888873
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhhhcccCCCC
Q 002060 796 GPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLAD 871 (973)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~~~~~ee~g~~~~ee~~~~~~~~r~~~~~~~~~~~ 871 (973)
.+.++.....+.|+..|++..++.+.+|+++.+.+++++|++.++|+|.++.++++.+.+..+++.+..||.+.
T Consensus 721 --l~sg~~~lk~~~sv~~qpe~~~d~~l~q~~r~~~~a~~e~~e~~~e~~~k~s~~~~rk~e~~~~r~e~~~g~S~ 794 (877)
T KOG0151|consen 721 --LESGERDLKPGSSVREQPENERDRLLRQDVRVEAIALIEYREADEEQGMKRSEDKERKVEIERKRKERKRGHSG 794 (877)
T ss_pred --cCCCCccCCCCCccccChhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhhhhhcchhHHHHHhhhcccC
Confidence 45667778889999999999999999999999999999999999999999999999999999888888888775
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.87 E-value=2.6e-22 Score=193.83 Aligned_cols=119 Identities=24% Similarity=0.435 Sum_probs=107.0
Q ss_pred HHHHHHhcccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHH
Q 002060 451 FEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEA 530 (973)
Q Consensus 451 le~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~ 530 (973)
|+.+|+.|++++++|+++|.|||+|..+|.+||++|.+.+... +.++||++|||||||||||. .+.++.|+..|.+
T Consensus 2 f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~--~~~~kL~~LYlindIl~n~~--~~~~~~f~~~~~~ 77 (121)
T smart00582 2 FEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKA--PPPRKLPLLYLLDSIVQNSK--RKYGSEFGDELGP 77 (121)
T ss_pred hHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceehhHHhHHHHHHHHh--hccHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998654 45799999999999999996 3457789999999
Q ss_pred hhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHH
Q 002060 531 TLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLR 581 (973)
Q Consensus 531 ~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~ 581 (973)
.++.+|.++..... +.++++|.+||++|++|.|||+++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~--------~~~~~ki~kll~iW~~~~iF~~~~i~~L~ 120 (121)
T smart00582 78 VFQDALRDVLGAAN--------DETKKKIRRLLNIWEERGIFPPSVLRPLR 120 (121)
T ss_pred HHHHHHHHHHHhCC--------HHHHHHHHHHHHHHhcCCCCCHHHHHHhh
Confidence 99998877664322 68999999999999999999999999987
No 3
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=99.71 E-value=8.1e-16 Score=173.99 Aligned_cols=133 Identities=20% Similarity=0.388 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHhc--ccCHHHHHHHHHHHhhcccc---HHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCC
Q 002060 445 DSQRDEFEDMLRAL--TLERSQIKEAMGFALDNADA---AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK 519 (973)
Q Consensus 445 ~~~r~~le~lL~~L--t~tr~sI~~~m~w~l~ha~~---a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~ 519 (973)
.+...+|..+|+.+ |||++-|..++.|+++++.+ ++-|+..|...++...+-+..+||+|||||||||||. ++
T Consensus 100 ~l~~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcq--rk 177 (757)
T KOG4368|consen 100 QLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQ--RK 177 (757)
T ss_pred cCCHHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHH--HH
Confidence 35567899999988 99999999999999999997 6777788888888888889999999999999999995 33
Q ss_pred CchhhHHHHHHhhHHHHHHHHHHHhhhhccccH-HHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCC
Q 002060 520 NASAYRTKFEATLPDIMESFNDLYRSITGRITA-EALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 588 (973)
Q Consensus 520 na~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~a-e~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~~ 588 (973)
.+-..-.++..++ ..+|| .+.+.. |.-.+++.+||.+||.+.||...+|.+|+++.++..
T Consensus 178 ~~~~~~~~l~~~v-------~~~yc--~~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~~ 238 (757)
T KOG4368|consen 178 QARELLAALQKVV-------VPIYC--TSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLG 238 (757)
T ss_pred HHHHHHHHHHHHh-------HHHHH--hhhhhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhhh
Confidence 3333333333333 34555 333333 344567899999999999999999999999998653
No 4
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=99.71 E-value=2.6e-17 Score=179.96 Aligned_cols=129 Identities=17% Similarity=0.277 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHHhcccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchh
Q 002060 444 TDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASA 523 (973)
Q Consensus 444 ~~~~r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~ 523 (973)
.....+.|...|..|+.|+++|+.+..|||.|..+|..||++|...|.... ..+||.+|||+|||+||| .+.+..
T Consensus 2 ~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~--~~~Kl~llYLaNDVvQns---krk~~e 76 (325)
T KOG2669|consen 2 SAFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSS--VNHKLTLLYLANDVVQNS---KRKGPE 76 (325)
T ss_pred CcccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccC--CCceeeehhhhHHHHHHh---hhcCch
Confidence 344567899999999999999999999999999999999999999997654 789999999999999999 566778
Q ss_pred hHHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 002060 524 YRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (973)
Q Consensus 524 yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (973)
|-..|..+++..|.|+..-.. ...+.+|.+||+||+++.||++.++..|+..|.
T Consensus 77 f~~ef~~v~~~a~~~i~~~~~--------~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~ 130 (325)
T KOG2669|consen 77 FVDEFWPVVLKAFAHIVEETD--------VKCKKKLGRLINIWEERNVFSPESLVDLEESLG 130 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 999999999999988765443 355899999999999999999999999999986
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=4.2e-14 Score=141.21 Aligned_cols=82 Identities=28% Similarity=0.477 Sum_probs=77.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+++|||+|||+.+|+++|+++|.+||.|.+|+|+. +..+++++|||||+|.+.++|+.|+..|||..|+|++|+|.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV---DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 468999999999999999999999999999999984 66789999999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|++..
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98754
No 6
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.54 E-value=9.9e-15 Score=139.80 Aligned_cols=108 Identities=23% Similarity=0.483 Sum_probs=90.4
Q ss_pred HHHHHHhc---ccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHH
Q 002060 451 FEDMLRAL---TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 527 (973)
Q Consensus 451 le~lL~~L---t~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~ 527 (973)
+..+|..| +.++.+|+.++.||++|..+|.+||++|.+.|... +..+||+.|||+|||++||..+ |...
T Consensus 4 ~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~--~~~~KL~~LYL~dsIvkn~~~~------~~~~ 75 (114)
T cd03562 4 YNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKC--PPEQKLPLLYLLDSIVKNVGRK------YKEF 75 (114)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHHHcccc------hHHH
Confidence 45566666 34999999999999999999999999999999554 4689999999999999999643 7777
Q ss_pred HHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcH
Q 002060 528 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSD 574 (973)
Q Consensus 528 fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~ 574 (973)
|...++.+|. .+|.. ..++.+++|.+||++|+++.+|+.
T Consensus 76 ~~~~~~~~f~---~~~~~-----~~~~~r~kl~rl~~iW~~~~~f~~ 114 (114)
T cd03562 76 FSEFLVPLFL---DAYEK-----VDEKTRKKLERLLNIWEERFVFGS 114 (114)
T ss_pred HHHHHHHHHH---HHHHh-----CCHHHHHHHHHHHHHccCCCCCCC
Confidence 8888787774 34442 357899999999999999999973
No 7
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=99.47 E-value=8e-15 Score=122.51 Aligned_cols=54 Identities=46% Similarity=0.838 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeee
Q 002060 332 LRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385 (973)
Q Consensus 332 ~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~ 385 (973)
++.+|++||.||+++|++||++||+++.+||+|+||++.+||+|.||+|+|+++
T Consensus 1 ~~~~I~~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y 54 (55)
T PF01805_consen 1 LREIIDKTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEY 54 (55)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHh
Confidence 468999999999999999999999999999999999977799999999999864
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=9.6e-13 Score=149.07 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=76.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
+.+|||+|||+.+++++|.++|++||.|.+|+|+. +..||.++|||||.|.+.++|..||..|||..|+|+.|+|.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~---d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIR---DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeE---cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45899999999999999999999999999999994 667899999999999999999999999999999999999999
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
+...
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 7643
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8e-13 Score=139.15 Aligned_cols=138 Identities=22% Similarity=0.450 Sum_probs=104.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCccEEEE
Q 002060 114 KDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPD---DFDPSGKLPGSFDDGDPQTTNLYV 190 (973)
Q Consensus 114 ~~k~K~r~le~F~eElk~~Qeere~r~~~r~~~~~g~~~~~~~~~sr~~~~~~---~~~~~~~a~gs~d~~dp~~ttLfV 190 (973)
..|+|.++|.+|-.....+.+...+. ..|--++..-++.+..++...-. .++ -.+....|.+|+|||
T Consensus 100 T~KsKGYgFVSf~~k~dAEnAI~~Mn----GqWlG~R~IRTNWATRKp~e~n~~~ltfd------eV~NQssp~NtsVY~ 169 (321)
T KOG0148|consen 100 TGKSKGYGFVSFPNKEDAENAIQQMN----GQWLGRRTIRTNWATRKPSEMNGKPLTFD------EVYNQSSPDNTSVYV 169 (321)
T ss_pred CCcccceeEEeccchHHHHHHHHHhC----CeeeccceeeccccccCccccCCCCccHH------HHhccCCCCCceEEe
Confidence 35689999999987777666666664 22333344334433322211110 111 123345678999999
Q ss_pred eCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEeecCCCC
Q 002060 191 GNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVAL 270 (973)
Q Consensus 191 gNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ak~~~~ 270 (973)
||++..+||+.|+.+|+.||+|.+|+|.. .+||+||.|.+.+.|..||..|||..|.|+.++|.|+|....
T Consensus 170 G~I~~~lte~~mr~~Fs~fG~I~EVRvFk---------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 170 GNIASGLTEDLMRQTFSPFGPIQEVRVFK---------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CCcCccccHHHHHHhcccCCcceEEEEec---------ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999999983 579999999999999999999999999999999999997643
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=9e-13 Score=149.30 Aligned_cols=80 Identities=21% Similarity=0.415 Sum_probs=76.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++|||+|||+.+++++|..+|+.||+|.+|+|+. +..+|+++|||||.|.+.++|+.||..|||..|.|+.|+|.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~---d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVR---DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEE---cCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 68999999999999999999999999999999994 667899999999999999999999999999999999999999
Q ss_pred ecC
Q 002060 265 GKS 267 (973)
Q Consensus 265 ak~ 267 (973)
+++
T Consensus 80 a~~ 82 (352)
T TIGR01661 80 ARP 82 (352)
T ss_pred ecc
Confidence 864
No 11
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=99.38 E-value=7e-14 Score=116.41 Aligned_cols=52 Identities=38% Similarity=0.655 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeec
Q 002060 334 HVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 386 (973)
Q Consensus 334 ~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~ 386 (973)
.+|++||.||+++|++||++||+++.+||+|+||++ ++++|.||+|+|+++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~-~~~~h~yy~~~l~~~~ 53 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYR 53 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCccCCC-CCCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999986 9999999999998653
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.37 E-value=1.8e-12 Score=146.88 Aligned_cols=85 Identities=28% Similarity=0.447 Sum_probs=78.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
.+....++|||+|||+++|+++|+++|..||+|.+|+|+. +..+++++|||||+|.+.++|+.||..|||..|.+++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~---d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMR---DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 3455689999999999999999999999999999999994 6678999999999999999999999999999999999
Q ss_pred EEEEeecC
Q 002060 260 LKIGWGKS 267 (973)
Q Consensus 260 LkV~~ak~ 267 (973)
|+|.|+++
T Consensus 179 i~V~~a~p 186 (346)
T TIGR01659 179 LKVSYARP 186 (346)
T ss_pred eeeecccc
Confidence 99999763
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=2.3e-12 Score=110.84 Aligned_cols=70 Identities=34% Similarity=0.620 Sum_probs=65.9
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 188 LfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
|||+|||+.+|+++|..+|++||.|..+.++. + .++..++||||.|.+.++|+.|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~---~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR---N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE---E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc---c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999984 2 5678899999999999999999999999999999985
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=4.7e-12 Score=131.71 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=75.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
.|...|+||||+|++.++.+.|+..|++||.|.+..|+ +|+.||+++|||||+|.+.+.|++|+...| -+|+||+-
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvi---td~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~a 83 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVI---TDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKA 83 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEE---eccCCccccceeeEEeecHHHHHHHhcCCC-Cccccccc
Confidence 45567999999999999999999999999999999999 688999999999999999999999997665 67999999
Q ss_pred EEEeecC
Q 002060 261 KIGWGKS 267 (973)
Q Consensus 261 kV~~ak~ 267 (973)
.|..|..
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 9988765
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.27 E-value=3.4e-11 Score=136.51 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=76.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC--eEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G--r~Lk 261 (973)
..++|||+|||+.+|+++|+++|++||.|..|+|+. +..++++++||||+|.+.++|+.||..||+..+.| ++|.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR---DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 457899999999999999999999999999999994 66789999999999999999999999999999876 7999
Q ss_pred EEeecCCCC
Q 002060 262 IGWGKSVAL 270 (973)
Q Consensus 262 V~~ak~~~~ 270 (973)
|.||.....
T Consensus 269 V~~a~~~~~ 277 (346)
T TIGR01659 269 VRLAEEHGK 277 (346)
T ss_pred EEECCcccc
Confidence 999986643
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2e-11 Score=127.40 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=78.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|-|.||+.+++|.+|.+||.+||+|..|.|. .|..||.++|||||+|.++++|.+||..|||.-++.-.|+|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla---rdK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA---RDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEE---EccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 47889999999999999999999999999999999 488999999999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 17
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=2.8e-11 Score=130.64 Aligned_cols=79 Identities=28% Similarity=0.471 Sum_probs=72.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
...|||+|||+...+.||+.+|++||.|.+|.|++ .++ .+||||||+|++.+||++|-.+|+|.+|.|++|.|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf----NER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF----NER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEe----ccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 46899999999999999999999999999999996 223 3799999999999999999999999999999999999
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
|.+.
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8765
No 18
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.1e-11 Score=130.23 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=77.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
+.+||||+-|++.++|..|+..|..||+|..|.|| .+..||+++|||||+|+...+...|.+..+|.+|+|+.|.|+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV---~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLV---RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEe---eecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 47999999999999999999999999999999999 488999999999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
+-+..
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86544
No 19
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1e-11 Score=117.94 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=73.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.++|||||||+..++|++|.+||+++|+|..|.|- .|..+..+.|||||+|.+.++|+.|+.-++|+.++.++|+|+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMG---Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMG---LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEec---cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 46999999999999999999999999999988776 466778899999999999999999999999999999999999
Q ss_pred ee
Q 002060 264 WG 265 (973)
Q Consensus 264 ~a 265 (973)
|-
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 94
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=2.9e-11 Score=144.32 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=76.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+||++.+++++|+.+|+.||.|.+|+|++ +..+|+++|||||.|.+.++|..|+..|||..|+|+.|+|+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~---D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEe---cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999999994 66788899999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98754
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.1e-11 Score=128.64 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=71.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++|||||||+.+|+++|+++|+.||.|.+|.|+. +. ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~---d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQS---EN---ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEe
Confidence 57999999999999999999999999999999985 22 24689999999999999999 6999999999999999
Q ss_pred ecCCCCC
Q 002060 265 GKSVALP 271 (973)
Q Consensus 265 ak~~~~p 271 (973)
+.....|
T Consensus 77 a~~~~~p 83 (260)
T PLN03120 77 AEDYQLP 83 (260)
T ss_pred ccCCCCC
Confidence 7665443
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=3.5e-11 Score=134.73 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=71.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCH--HHHHHHHHHhCCcEECCeEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR--ADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~--~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+.+||||||++.|++++|..+|+.||.|.+|.|+ +.+| ||||||+|.+. .++..||..|||..|+|+.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-----RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-----RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-----cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 35889999999999999999999999999999998 2456 89999999987 789999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.-|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9999864
No 23
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=2.6e-11 Score=123.51 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=78.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++|-|-||.+.++.++|..+|.+||.|..|.|.| |..|+.++|||||-|....+|+.|+.+|+|.+|+|+.|.|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPr---dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPR---DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccc---ccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 58899999999999999999999999999999997 667899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002060 265 GKSVAL 270 (973)
Q Consensus 265 ak~~~~ 270 (973)
|+....
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 987654
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.19 E-value=3.8e-11 Score=143.36 Aligned_cols=78 Identities=27% Similarity=0.560 Sum_probs=74.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++||||||++.+++++|+.+|.+||+|.+|+|++ +..+|+++|||||+|.+.++|+.|+..|||..|+|+.|+|.+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~---D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEee---cCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 58999999999999999999999999999999995 667899999999999999999999999999999999999985
Q ss_pred e
Q 002060 265 G 265 (973)
Q Consensus 265 a 265 (973)
.
T Consensus 184 p 184 (612)
T TIGR01645 184 P 184 (612)
T ss_pred c
Confidence 3
No 25
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.1e-11 Score=120.53 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=71.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..|.||||||+..+++.+|..+|..||+|.+|.|-. .+.|||||+|.+..+|+.|+..|||..|.|..|+|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--------cCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 368999999999999999999999999999998873 467999999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
+..-.+
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 976553
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.17 E-value=1.2e-10 Score=101.05 Aligned_cols=70 Identities=29% Similarity=0.569 Sum_probs=63.0
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 188 LfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
|||+|||+.+++++|..+|+.||.|..|.++. +.. |..+++|||+|.+.++|..|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~---~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIK---NKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEE---STT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEe---eec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999994 334 78899999999999999999999999999999885
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.3e-11 Score=124.66 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=80.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
...+||||+|...|+|..|...|-+||.|+.|+|. .|-++++.||||||+|...++|.+||..||+.+|.|+.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP---lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP---LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccc---cchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 46899999999999999999999999999999998 577899999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002060 264 WGKSVALP 271 (973)
Q Consensus 264 ~ak~~~~p 271 (973)
+|++..+.
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99988664
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=1.3e-10 Score=136.72 Aligned_cols=83 Identities=29% Similarity=0.541 Sum_probs=77.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+|+++|..+|+.||.|..|.|+. +..+|+++|||||+|.+.++|..|+..|||..|.|++|+|
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~---d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHR---DPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 3478999999999999999999999999999999984 6677899999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.||...
T Consensus 261 ~~a~~~ 266 (457)
T TIGR01622 261 GYAQDS 266 (457)
T ss_pred EEccCC
Confidence 998743
No 29
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.14 E-value=4.9e-12 Score=108.95 Aligned_cols=64 Identities=30% Similarity=0.592 Sum_probs=54.4
Q ss_pred ceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCc
Q 002060 500 KVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFS 573 (973)
Q Consensus 500 KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp 573 (973)
||++|||+|||||||. .++.+.|...|++.||.+|.++. .. ..++.+++|.+||++|+++.||+
T Consensus 1 KL~~lYl~ndI~q~sk--~k~~~~f~~~F~~~l~~~~~~~~---~~-----~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSK--RKNPDEFAPAFSPVLPDAFAHAY---KN-----VDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTHCHHHHHHCCHHHHHHHHC---CC-----S-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhh--hcChHHHHHHHHHHHHHHHHHHH---hc-----CCHHHHHHHHHHHHHhhCCCCCC
Confidence 7899999999999994 55888999999999999997653 21 26789999999999999999996
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.4e-10 Score=121.47 Aligned_cols=86 Identities=24% Similarity=0.448 Sum_probs=80.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
+.+...|||.|.-||.++|+++|+.+|+..|.|.+||+++ |+-+|++-|||||.|.++.||++|+..|||..+..+.
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvR---DKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeee---ccccccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 3455679999999999999999999999999999999995 7789999999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 002060 260 LKIGWGKSV 268 (973)
Q Consensus 260 LkV~~ak~~ 268 (973)
|+|+||++.
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999865
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.13 E-value=3e-10 Score=137.23 Aligned_cols=81 Identities=33% Similarity=0.489 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+||++.+|+++|+++|++||.|.+|+|+. + .+|.++|||||+|.+.++|.+|+..|||..++|++|+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~---d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML---D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE---C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEE
Confidence 3578999999999999999999999999999999994 3 57899999999999999999999999999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.||..
T Consensus 359 ~~a~~ 363 (562)
T TIGR01628 359 ALAQR 363 (562)
T ss_pred EeccC
Confidence 99975
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.13 E-value=2.3e-10 Score=136.23 Aligned_cols=83 Identities=14% Similarity=0.263 Sum_probs=77.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||||||+.+|+++|.++|..||.|..+.|+. +..+|.++|||||+|.+..+|..||..|||..|+|+.|.|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK---DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 457999999999999999999999999999999983 66789999999999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
||....
T Consensus 371 ~a~~~~ 376 (509)
T TIGR01642 371 RACVGA 376 (509)
T ss_pred ECccCC
Confidence 987543
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=1.4e-10 Score=139.94 Aligned_cols=78 Identities=35% Similarity=0.587 Sum_probs=73.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
++|||||||+++||++|.++|++||.|.+|+|+. +..|++++|||||.|.+.++|++|+..||+..|.|+.|+|.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~---d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCR---DSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 4799999999999999999999999999999994 6678899999999999999999999999999999999999996
Q ss_pred c
Q 002060 266 K 266 (973)
Q Consensus 266 k 266 (973)
.
T Consensus 78 ~ 78 (562)
T TIGR01628 78 Q 78 (562)
T ss_pred c
Confidence 4
No 34
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=2.6e-11 Score=121.41 Aligned_cols=87 Identities=15% Similarity=0.420 Sum_probs=79.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
-..+.-|||||||+..||.+|..+|++||.|+.|.+++ |..||+++||||.+|.+..+.--|+..|||..|.|+.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiR---Dk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIR---DKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEe---cCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 33468899999999999999999999999999999995 889999999999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 002060 262 IGWGKSVALP 271 (973)
Q Consensus 262 V~~ak~~~~p 271 (973)
|+.......|
T Consensus 109 VDHv~~Yk~p 118 (219)
T KOG0126|consen 109 VDHVSNYKKP 118 (219)
T ss_pred eeecccccCC
Confidence 9986655444
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.07 E-value=7e-10 Score=117.50 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=68.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+.+|||+||++.+|+++|+++|+.||.|.+|.|+. + +..++||||+|.+..+|+.|+ .|+|..|.+++|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~---D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIR---S---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEec---C---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 468999999999999999999999999999999995 3 234589999999999999998 999999999999987
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
-.-
T Consensus 77 ~~~ 79 (243)
T PLN03121 77 RWG 79 (243)
T ss_pred eCc
Confidence 543
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.07 E-value=3.6e-10 Score=134.87 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC-CeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~-Gr~LkV 262 (973)
..|+|||+|||++++|++|..+|++||.|.+|+|+. | .+|+++|||||+|.+.++|+.||..|||..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~---D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM---D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE---C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 469999999999999999999999999999999994 4 68899999999999999999999999999985 777777
Q ss_pred Eee
Q 002060 263 GWG 265 (973)
Q Consensus 263 ~~a 265 (973)
.++
T Consensus 133 ~~S 135 (578)
T TIGR01648 133 CIS 135 (578)
T ss_pred ccc
Confidence 653
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=8.2e-10 Score=93.63 Aligned_cols=72 Identities=35% Similarity=0.580 Sum_probs=66.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 187 tLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
+|||+|||+.+++++|..+|..||.|..+.++.. . +.++++|||.|.+..+|+.|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~---~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD---T--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC---C--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999999852 2 5678999999999999999999999999999998873
No 38
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=99.06 E-value=2.7e-10 Score=112.38 Aligned_cols=131 Identities=25% Similarity=0.364 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCC-Cchhh
Q 002060 446 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK-NASAY 524 (973)
Q Consensus 446 ~~r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~-na~~y 524 (973)
+.|.+|..+|++||.+..||+.|..|+|.|.+.++++.+||++.|-.. .++.|+++||+| |.|+.++.... ....|
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~--~lN~R~nI~~fI-D~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKE--NLNTRINIFYFI-DSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--chhhHHHHHHHH-HHHHHHHHhcccccchh
Confidence 467899999999999999999999999999999999999999999766 689999999999 66888764433 34569
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 002060 525 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (973)
Q Consensus 525 R~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (973)
...++..||.|...+.+- +...+ .....|.+||+.|..+.+++...+..+...+.
T Consensus 82 v~~l~~dL~~Iv~~V~P~-----~~~g~-~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~ 136 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAPP-----DNSGA-ANLKSVRKVLKNWSKKKILDPEEYEEIEASLK 136 (139)
T ss_pred HHHHHHHHHHHHHHhCCC-----CCccc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 999999999999655432 22222 56789999999999999999999998877653
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.5e-10 Score=120.61 Aligned_cols=81 Identities=26% Similarity=0.580 Sum_probs=76.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.-.+|||-|.+.++-+.|++.|.+||.|.+++|++ |..|++++|||||.|-+.++|++||..|||.-|++|.|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvir---D~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIR---DMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEee---cccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 45699999999999999999999999999999994 888999999999999999999999999999999999999999
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
|.-.
T Consensus 139 ATRK 142 (321)
T KOG0148|consen 139 ATRK 142 (321)
T ss_pred cccC
Confidence 8644
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.03 E-value=7.3e-10 Score=117.54 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=75.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++|||||||+.+|+++|..+|..||.|..|.|+. +..+|.++|||||.|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~---d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVR---DRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeee---ccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 69999999999999999999999999999999985 557899999999999999999999999999999999999999
Q ss_pred ecC
Q 002060 265 GKS 267 (973)
Q Consensus 265 ak~ 267 (973)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 764
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.03 E-value=9.3e-10 Score=130.57 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=73.7
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 182 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 182 dp~~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
.+.+++|||+||++ .+|+++|..+|+.||.|.+|+|+.. .+|||||+|.+.++|..|+..|||..|.|++|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--------KKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 45678999999998 6999999999999999999999941 36999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 002060 261 KIGWGKSVAL 270 (973)
Q Consensus 261 kV~~ak~~~~ 270 (973)
+|.+++...+
T Consensus 344 ~v~~s~~~~~ 353 (481)
T TIGR01649 344 RVCPSKQQNV 353 (481)
T ss_pred EEEEcccccc
Confidence 9999876543
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.02 E-value=8.9e-10 Score=129.55 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=74.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
...+|||+|||+.+++++|.++|++||.|..|+|+. +..+|+++|||||+|.+.++|..|| .|+|..+.|++|.|.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~---d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIK---DRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEee---cCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 468999999999999999999999999999999994 6678899999999999999999998 699999999999998
Q ss_pred eecC
Q 002060 264 WGKS 267 (973)
Q Consensus 264 ~ak~ 267 (973)
++..
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 7543
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.7e-10 Score=123.81 Aligned_cols=76 Identities=28% Similarity=0.588 Sum_probs=73.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
-|.||||.+.+.+.|+.|+..|..||+|++|.+-| |+.|++++||+||+|+-.+.|+-|++.|||..++|+.|+|+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSW---Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccc---ccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 48899999999999999999999999999999999 78899999999999999999999999999999999999997
No 44
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=6.7e-10 Score=106.54 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=78.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
....|||.++...+||+++...|+.||.|+.+.+- .|..||..+||+.|+|.+.++|+.|+.+|||..|.|++|.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN---LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN---LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeec---cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 46889999999999999999999999999999987 477899999999999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
|+....
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 998653
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.00 E-value=1.1e-09 Score=130.91 Aligned_cols=74 Identities=32% Similarity=0.534 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~f--G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.++|||+||+..+|+++|+++|++| |.|..|+++ ++||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 5789999999999999999999999 999999887 369999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||++..
T Consensus 302 ~~Akp~~ 308 (578)
T TIGR01648 302 TLAKPVD 308 (578)
T ss_pred EEccCCC
Confidence 9998653
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.2e-09 Score=122.07 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=75.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE-CCeEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV-YEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i-~Gr~Lk 261 (973)
+..|-||||.||.++.|++|.-+|++.|.|..++|| .|+.+|.+||||||+|.+.+.|+.|+..||+.+| .|+.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM---mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM---MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEe---ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 568999999999999999999999999999999999 5889999999999999999999999999999987 689998
Q ss_pred EEee
Q 002060 262 IGWG 265 (973)
Q Consensus 262 V~~a 265 (973)
|..+
T Consensus 158 vc~S 161 (506)
T KOG0117|consen 158 VCVS 161 (506)
T ss_pred EEEe
Confidence 8764
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.99 E-value=4.4e-10 Score=113.05 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=74.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
..|||||||+..++++.|.++|-+.|+|..+.|. .|..+...+|||||+|.++++|+-|++-||...+.|++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iP---kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIP---KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecc---hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4789999999999999999999999999999987 4777888999999999999999999999999999999999987
Q ss_pred ec
Q 002060 265 GK 266 (973)
Q Consensus 265 ak 266 (973)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 65
No 48
>smart00360 RRM RNA recognition motif.
Probab=98.97 E-value=1.8e-09 Score=91.10 Aligned_cols=71 Identities=31% Similarity=0.558 Sum_probs=64.8
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 190 VGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 190 VgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
|+|||..+++++|..+|..||.|..+.|.. +..++.+++||||.|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~---~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVR---DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEe---CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999985 33467889999999999999999999999999999998873
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=99.06 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+.-|||.|||+.+|.+++.++|++||+|..|+|-. +...+|.|||.|++..+|..|+..|+|..+.++.|.|.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~------~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN------TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC------ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 367899999999999999999999999999999973 33458999999999999999999999999999999998
Q ss_pred e
Q 002060 264 W 264 (973)
Q Consensus 264 ~ 264 (973)
|
T Consensus 91 y 91 (124)
T KOG0114|consen 91 Y 91 (124)
T ss_pred e
Confidence 7
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.97 E-value=1.1e-09 Score=126.48 Aligned_cols=81 Identities=21% Similarity=0.502 Sum_probs=77.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
..+||||+|+.+++++|..+|+..|.|.++++++ |.+||+.+||||++|.+.++|+.|+..|||..+.|++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~---D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY---DRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecc---cccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 8899999999999999999999999999999996 7789999999999999999999999999999999999999998
Q ss_pred cCCC
Q 002060 266 KSVA 269 (973)
Q Consensus 266 k~~~ 269 (973)
....
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 7653
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=3.2e-09 Score=111.46 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=75.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
....|||-||.++++|..|.++|++||.|..|||++ |-.|.+.+|||||++.+..+|..||..|||..++++.|.|+
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvir---D~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIR---DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEe---cCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 467899999999999999999999999999999995 77788999999999999999999999999999999999999
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
|-.
T Consensus 354 FKt 356 (360)
T KOG0145|consen 354 FKT 356 (360)
T ss_pred Eec
Confidence 954
No 52
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=5.7e-09 Score=88.90 Aligned_cols=74 Identities=30% Similarity=0.589 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 187 tLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
+|||+|||+.+++++|..+|..||.|..+.+.+.. . +..+++|||.|.+.++|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~---~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK---D-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC---C-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998522 2 25689999999999999999999999999999999875
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.92 E-value=3.6e-09 Score=125.61 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH--hCCcEECCeEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE--MQGVVVYEYELKI 262 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~--lnG~~i~Gr~LkV 262 (973)
+.+|||+|||+.+++++|.++|++||.|.+|+|+. .++||||+|.+.++|+.|+.. +++..|.|++|+|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 57899999999999999999999999999999983 468999999999999999986 4789999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+...
T Consensus 73 ~~s~~~ 78 (481)
T TIGR01649 73 NYSTSQ 78 (481)
T ss_pred EecCCc
Confidence 998654
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.2e-09 Score=115.03 Aligned_cols=86 Identities=28% Similarity=0.456 Sum_probs=79.4
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 179 d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
....|.+|||||-.||....+.+|..+|-.||.|.+.|+. .|+.|..+++||||.|.+..+|+.||.+|||+.|+-+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF---vDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF---VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee---ehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 3456789999999999999999999999999999999998 4778999999999999999999999999999999999
Q ss_pred EEEEEeecC
Q 002060 259 ELKIGWGKS 267 (973)
Q Consensus 259 ~LkV~~ak~ 267 (973)
+|+|..-++
T Consensus 356 RLKVQLKRP 364 (371)
T KOG0146|consen 356 RLKVQLKRP 364 (371)
T ss_pred hhhhhhcCc
Confidence 999987554
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.3e-09 Score=107.78 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=71.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||||||.++.+.+|..+|.+||.|..|.+-.++ ....||||+|++..+|+.||..-||..++|+.|+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 46899999999999999999999999999999876422 356899999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+..-
T Consensus 79 fprgg 83 (241)
T KOG0105|consen 79 FPRGG 83 (241)
T ss_pred eccCC
Confidence 97654
No 56
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=5.5e-09 Score=117.04 Aligned_cols=74 Identities=31% Similarity=0.442 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
-..|||-||+.+|||+.|+++|.+||.|..|+.+ +-||||.|.++++|.+||+.|||++|.|..|.|.+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----------cceeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 4679999999999999999999999999999887 35999999999999999999999999999999999
Q ss_pred ecCCC
Q 002060 265 GKSVA 269 (973)
Q Consensus 265 ak~~~ 269 (973)
||++.
T Consensus 328 AKP~~ 332 (506)
T KOG0117|consen 328 AKPVD 332 (506)
T ss_pred cCChh
Confidence 99874
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7e-09 Score=112.91 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=79.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.|+-..|||+.|+|.+|.++|.-+|+.||.|.+|.|+. |..||-+-.||||+|.+.+++++|.-.|+++.|+.++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---cccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34567899999999999999999999999999999995 678999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+.++.
T Consensus 313 VDFSQSVs 320 (479)
T KOG0415|consen 313 VDFSQSVS 320 (479)
T ss_pred eehhhhhh
Confidence 99987764
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.85 E-value=3.2e-09 Score=113.38 Aligned_cols=73 Identities=23% Similarity=0.463 Sum_probs=69.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
..|||||||..+++.+|+.+|.+||.|.+|.|+ ++||||..++...|+.||..|+|..|+|..|+|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 469999999999999999999999999999999 699999999999999999999999999999999988
Q ss_pred cCCC
Q 002060 266 KSVA 269 (973)
Q Consensus 266 k~~~ 269 (973)
++..
T Consensus 72 ksKs 75 (346)
T KOG0109|consen 72 KSKS 75 (346)
T ss_pred cccC
Confidence 8763
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.84 E-value=1.6e-08 Score=84.29 Aligned_cols=56 Identities=29% Similarity=0.541 Sum_probs=50.5
Q ss_pred HHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 202 LLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 202 L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
|..+|++||.|..|.+... .+++|||+|.+.++|..|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~--------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK--------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT--------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999999999841 1599999999999999999999999999999999996
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=9.2e-09 Score=112.36 Aligned_cols=80 Identities=30% Similarity=0.634 Sum_probs=70.8
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH-hCCcEECC
Q 002060 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE-MQGVVVYE 257 (973)
Q Consensus 179 d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~-lnG~~i~G 257 (973)
+.+|...++||||+|...++|.+|+.+|.+||.|.+|.|+. .++||||+|.++..|+.|... +|-.+|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------RKGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---------ccccceeeehhhHHHHHHHHhhcceeeecc
Confidence 34456689999999999999999999999999999999994 357999999999999988765 56667999
Q ss_pred eEEEEEeecC
Q 002060 258 YELKIGWGKS 267 (973)
Q Consensus 258 r~LkV~~ak~ 267 (973)
++|+|.||++
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999999987
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.81 E-value=4.4e-09 Score=105.91 Aligned_cols=83 Identities=30% Similarity=0.536 Sum_probs=76.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sV-kI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.+.+||||||.+.++|..|..+|+.||.|.+. +||+ ++.||.+++||||.|.+.+.+.+|+..|||..++.++|.|
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~r---d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMR---DPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccc---cccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 35899999999999999999999999998664 7884 7789999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|++...
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9997653
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=7.9e-09 Score=115.25 Aligned_cols=87 Identities=16% Similarity=0.432 Sum_probs=75.9
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE-ECC
Q 002060 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE 257 (973)
Q Consensus 179 d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~-i~G 257 (973)
+..|...-+||||.+|..++|.+|+.+|++||.|.+|.|+ .|+.|+.++|||||.|.++++|.+|+.+|++.. |-|
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~---kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLI---KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEee---cccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 3345567889999999999999999999999999999999 477899999999999999999999999998865 544
Q ss_pred --eEEEEEeecCC
Q 002060 258 --YELKIGWGKSV 268 (973)
Q Consensus 258 --r~LkV~~ak~~ 268 (973)
.+|.|.||...
T Consensus 105 ~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 105 MHHPVQVKYADGE 117 (510)
T ss_pred CCcceeecccchh
Confidence 67888887543
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.80 E-value=5.5e-09 Score=119.91 Aligned_cols=78 Identities=29% Similarity=0.546 Sum_probs=73.6
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEeecC
Q 002060 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267 (973)
Q Consensus 188 LfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ak~ 267 (973)
||||||.+++++++|+.+|..||.|..|.++ .|.+||+++|||||+|.+.++|..|+..|||.+|.|+.|+|+....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~---~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLT---KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeec---cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999999999998 5788999999999999999999999999999999999999987644
Q ss_pred C
Q 002060 268 V 268 (973)
Q Consensus 268 ~ 268 (973)
.
T Consensus 358 r 358 (549)
T KOG0147|consen 358 R 358 (549)
T ss_pred e
Confidence 3
No 64
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.6e-08 Score=115.57 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh-----CC-cEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-----QG-VVV 255 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~l-----nG-~~i 255 (973)
.....+|||-|||+++||+.|..+|++||.|..+.|+ .++.||+++|+|||.|.+..+|..||... .| +.|
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV---~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV---KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEE---eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 3456899999999999999999999999999999999 58899999999999999999999999876 34 779
Q ss_pred CCeEEEEEee
Q 002060 256 YEYELKIGWG 265 (973)
Q Consensus 256 ~Gr~LkV~~a 265 (973)
.|+.|+|..|
T Consensus 366 ~GR~Lkv~~A 375 (678)
T KOG0127|consen 366 DGRLLKVTLA 375 (678)
T ss_pred eccEEeeeec
Confidence 9999999875
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=5.8e-09 Score=116.28 Aligned_cols=80 Identities=29% Similarity=0.452 Sum_probs=72.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE-ECC--eEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YELK 261 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~-i~G--r~Lk 261 (973)
..+||||.|+..+||.+++++|++||.|.+|.|++ + .-|.+||||||.|.+.+.|..||+.|||.. +.| .+|.
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr---d-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR---D-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhhee---c-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 57899999999999999999999999999999995 2 246789999999999999999999999976 555 7899
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||.+.
T Consensus 200 VkFADtq 206 (510)
T KOG0144|consen 200 VKFADTQ 206 (510)
T ss_pred EEecccC
Confidence 9999765
No 66
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.2e-08 Score=116.54 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=77.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
..||||++||+.++.++|..+|+.+|+|..+.++ ++..++.+||||||+|.-.+++++|+..+++..+.|+.|+|.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vV---t~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVV---TNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEe---cCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence 3899999999999999999999999999999999 6888889999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002060 265 GKSVAL 270 (973)
Q Consensus 265 ak~~~~ 270 (973)
|+...-
T Consensus 82 A~~R~r 87 (678)
T KOG0127|consen 82 AKKRAR 87 (678)
T ss_pred cccccc
Confidence 876543
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.73 E-value=1.5e-08 Score=119.74 Aligned_cols=76 Identities=29% Similarity=0.565 Sum_probs=71.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
++|||||+|+..|+|.+|..+|+.||.|.+|.++. +++||||++..+.+|++|+.+|+...+.++.|+|.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 68999999999999999999999999999999984 579999999999999999999999999999999999
Q ss_pred ecCCC
Q 002060 265 GKSVA 269 (973)
Q Consensus 265 ak~~~ 269 (973)
|....
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 86553
No 68
>smart00361 RRM_1 RNA recognition motif.
Probab=98.69 E-value=5e-08 Score=85.45 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 199 ENFLLRTFG----RFGPIASVK-IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 199 E~~L~~lF~----~fG~I~sVk-I~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+++|..+|. +||.|.+|. |+.++ +..++.++|||||.|.+.++|..|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~-~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDN-VGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCC-CCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 65433 1122889999999999999999999999999999999986
No 69
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.64 E-value=2.6e-07 Score=107.01 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=53.3
Q ss_pred ccccCCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEE
Q 002060 322 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWR 381 (973)
Q Consensus 322 v~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwr 381 (973)
+.+..|...++-+||.+||.||.++|.+||-+|+.++.+||+|.||. +++-.|.||+|-
T Consensus 178 ~~~eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~-fDH~Lnpyykfl 236 (878)
T KOG1847|consen 178 LRQELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLM-FDHHLNPYYKFL 236 (878)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceec-cccccCHHHHHH
Confidence 34555667899999999999999999999999999999999999996 889999999973
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.64 E-value=3.6e-08 Score=105.50 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=70.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+|+|+||||.+.++.++|+..|.+||+|.++.|+ ++|+||.|.-.++|..|+..|||.++.|++|+|.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-----------cceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 47899999999999999999999999999999999 5899999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
.+.+.
T Consensus 146 ~stsr 150 (346)
T KOG0109|consen 146 LSTSR 150 (346)
T ss_pred eeccc
Confidence 87544
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=1e-07 Score=99.56 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=71.0
Q ss_pred cEEEEeCCCCCCCHHHHHH----HhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 186 TNLYVGNLSPQVDENFLLR----TFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~----lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.||||.||+..+.-++|+. +|++||.|..|.... |.+.+|-|||.|.+.+.|..|+.+|+|..+.|++|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3999999999999988877 999999999988874 567899999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||+..
T Consensus 84 iqyA~s~ 90 (221)
T KOG4206|consen 84 IQYAKSD 90 (221)
T ss_pred eecccCc
Confidence 9999865
No 72
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.54 E-value=2.2e-07 Score=110.80 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCccEEEEeCCCCCC----------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 002060 182 DPQTTNLYVGNLSPQV----------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 182 dp~~ttLfVgNLp~~v----------tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln 251 (973)
...+.+|+|.||...- ..++|..+|++||.|.+|+|+.+..+..++.+.||+||.|.+.++|+.|+..||
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 3456789999996321 125789999999999999999765455567778999999999999999999999
Q ss_pred CcEECCeEEEEEee
Q 002060 252 GVVVYEYELKIGWG 265 (973)
Q Consensus 252 G~~i~Gr~LkV~~a 265 (973)
|..|+|+.|.|.|.
T Consensus 486 Gr~~~gr~v~~~~~ 499 (509)
T TIGR01642 486 GRKFNDRVVVAAFY 499 (509)
T ss_pred CCEECCeEEEEEEe
Confidence 99999999999984
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.46 E-value=5.5e-07 Score=102.99 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=75.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
..||||++|+..+...+|+.||++||.|+-.+|+ ++..+-..++||||++.+..+|.+||..|+.+.|+|+.|-|.-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVV---TNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVV---TNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeee---ecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 5799999999999999999999999999999999 4555555789999999999999999999999999999999999
Q ss_pred ecCCC
Q 002060 265 GKSVA 269 (973)
Q Consensus 265 ak~~~ 269 (973)
+++.+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88764
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.41 E-value=5.6e-07 Score=92.78 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccC-CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~f-G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..-+||..+|..+.+..+..+|.+| |.|..+++-+ +..||.++|||||+|++.+.|+-|-..||++.++|+-|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR---nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR---NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeec---ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4668999999999999999999988 6677777753 67899999999999999999999999999999999999998
Q ss_pred e
Q 002060 264 W 264 (973)
Q Consensus 264 ~ 264 (973)
+
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 7
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.41 E-value=1.7e-05 Score=94.47 Aligned_cols=132 Identities=17% Similarity=0.290 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhc----c-cCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCC-CCC
Q 002060 447 QRDEFEDMLRAL----T-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAP-VKN 520 (973)
Q Consensus 447 ~r~~le~lL~~L----t-~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~-v~n 520 (973)
....|...|..| + .++..|..++..+|+|......||..+.+++..+. ...||..||+|--|+-.+.-. .++
T Consensus 3 ~v~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kCk--pe~Kl~gLYVIDSIVRqsrhq~~~~ 80 (894)
T KOG0132|consen 3 AVKEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKKCK--PEYKLPGLYVIDSIVRQSRHQFGKE 80 (894)
T ss_pred HHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccccCeeEEehHHHHHHHHhhccc
Confidence 345788888888 2 68899999999999999999999999999986654 779999999999888776411 223
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCCC
Q 002060 521 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGN 589 (973)
Q Consensus 521 a~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~~~ 589 (973)
-..|-.-|...+-..|. .+|... .+.+.++.+||++|..++||-.+.|.-|..+.-+..+
T Consensus 81 kd~F~prf~~n~~~tf~---~L~~c~------~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 81 KDVFGPRFSKNFTGTFQ---NLYECP------QEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSGL 140 (894)
T ss_pred ccccCCccchhHHHHHH---HHHhcC------HHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccCc
Confidence 33344445554444443 334422 3778999999999999999999999999999987665
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=9.1e-07 Score=96.90 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=73.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
...|||..+.++.+|++|+.+|.-||+|.+|++-. .+.++.++||||++|.+..+...|+..||-+.++|+-|+|+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr---~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeec---cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 57899999999999999999999999999999984 555677899999999999999999999999999999999976
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
+-..
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 5433
No 77
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7e-07 Score=102.32 Aligned_cols=75 Identities=24% Similarity=0.466 Sum_probs=68.6
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEeecC
Q 002060 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267 (973)
Q Consensus 188 LfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ak~ 267 (973)
|||-||++.++...|..+|+.||.|.+|+++. +. .| ++|| ||.|.+.+.|..|+..|||..+.|+.|.|+....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~---~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVAT---DE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEE---cC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999999999999999999994 32 34 8999 9999999999999999999999999999987644
Q ss_pred C
Q 002060 268 V 268 (973)
Q Consensus 268 ~ 268 (973)
.
T Consensus 153 ~ 153 (369)
T KOG0123|consen 153 K 153 (369)
T ss_pred h
Confidence 3
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=8.5e-07 Score=104.77 Aligned_cols=81 Identities=26% Similarity=0.348 Sum_probs=69.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
|+|||.||++.+|.+.|..+|..+|.|.++.|..-+.....--+.|||||+|.+.++|++|+..|+|++|.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999988742211112235699999999999999999999999999999999996
Q ss_pred c
Q 002060 266 K 266 (973)
Q Consensus 266 k 266 (973)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 5
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=4.9e-07 Score=106.75 Aligned_cols=82 Identities=24% Similarity=0.427 Sum_probs=74.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..|+|+|-|||+..+-.+++.+|+.||.|.+|+|.. . ...+.++|||||.|.+..+|.+|+.+|.++-+.|+.|.+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPK--K-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPK--K-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccch--h-hcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 468999999999999999999999999999999973 2 3556679999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
||+.-
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99865
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.30 E-value=1.9e-06 Score=92.67 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=74.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|+|.|||+.|++.+|+++|..||.+..|-|.|. ..|++.|+|-|.|...++|.+|+..+||+.++|++|++.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~----~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD----RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC----CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3488999999999999999999999999999999873 378899999999999999999999999999999999998
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
..-...
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 765543
No 81
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.3e-06 Score=100.17 Aligned_cols=72 Identities=31% Similarity=0.565 Sum_probs=67.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
..|||| ++|||.+|.++|+.+|+|.+|++.. +- | +-|||||.|.+..+|++||..||...+.|++|+|-|.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~---d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCR---DA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEee---cC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 469999 9999999999999999999999994 44 4 8999999999999999999999999999999999996
Q ss_pred c
Q 002060 266 K 266 (973)
Q Consensus 266 k 266 (973)
.
T Consensus 73 ~ 73 (369)
T KOG0123|consen 73 Q 73 (369)
T ss_pred c
Confidence 4
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.28 E-value=3.8e-06 Score=87.32 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC---CeEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYELK 261 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~---Gr~Lk 261 (973)
-.||||++||.+|...+|..+|..|-....+.|-+ +.......+.+|||+|.+..+|.+|+.+|||+.++ +..|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~--Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY--TSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeee--ccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 58999999999999999999999886665555543 22222234589999999999999999999999985 68999
Q ss_pred EEeecCCCC
Q 002060 262 IGWGKSVAL 270 (973)
Q Consensus 262 V~~ak~~~~ 270 (973)
|.+||+...
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999997743
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.19 E-value=5.9e-06 Score=90.76 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH
Q 002060 178 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 249 (973)
Q Consensus 178 ~d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~s--------VkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ 249 (973)
+..+...+|+|||+|||.++|-+++..+|++||.|.. |+|.. + ..|..+|=|.++|...++++-|+..
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYr---d-~~G~lKGDaLc~y~K~ESVeLA~~i 202 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYR---D-NQGKLKGDALCCYIKRESVELAIKI 202 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEe---c-CCCCccCceEEEeecccHHHHHHHH
Confidence 3334456899999999999999999999999999854 56653 2 3488999999999999999999999
Q ss_pred hCCcEECCeEEEEEeecCC
Q 002060 250 MQGVVVYEYELKIGWGKSV 268 (973)
Q Consensus 250 lnG~~i~Gr~LkV~~ak~~ 268 (973)
|++..+.|+.|+|.-|+..
T Consensus 203 lDe~~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 203 LDEDELRGKKLRVERAKFQ 221 (382)
T ss_pred hCcccccCcEEEEehhhhh
Confidence 9999999999999999765
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.18 E-value=5e-06 Score=93.19 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHh-ccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF-~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
...+||.|||+++..++|+.|| .+.|.|..|.++. ...|+.+|||.|+|.+++.+++|++.||.+.+.|++|+|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~----D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF----DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec----ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 4569999999999999999999 6899999999985 4578999999999999999999999999999999999986
Q ss_pred e
Q 002060 264 W 264 (973)
Q Consensus 264 ~ 264 (973)
-
T Consensus 120 E 120 (608)
T KOG4212|consen 120 E 120 (608)
T ss_pred c
Confidence 3
No 85
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=3.2e-06 Score=89.63 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE-ECC--eEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YELK 261 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~-i~G--r~Lk 261 (973)
-.+||||-|...-+|++++.+|..||.|.+|.++. ...|.++||+||.|.+..+|+.||..|+|.. +-| ..|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlr----g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLR----GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEec----CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 37899999999999999999999999999999985 2356789999999999999999999999976 333 6788
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||...
T Consensus 95 VK~ADTd 101 (371)
T KOG0146|consen 95 VKFADTD 101 (371)
T ss_pred EEeccch
Confidence 8888543
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.13 E-value=4.3e-06 Score=93.65 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=68.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..|+|||-|||.++|.+.|+.-|..||.|..+.||- .|+++| .|.|.++++|++|+..|||..+.|+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime------~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME------NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc------cCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 45678999999999999999999999999999999983 456665 8999999999999999999999999999
Q ss_pred EEe
Q 002060 262 IGW 264 (973)
Q Consensus 262 V~~ 264 (973)
|.|
T Consensus 605 V~y 607 (608)
T KOG4212|consen 605 VTY 607 (608)
T ss_pred eee
Confidence 987
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.04 E-value=4.2e-06 Score=88.62 Aligned_cols=77 Identities=26% Similarity=0.478 Sum_probs=71.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
-..||.|-|...++.+.|...|.+|-.....+++. +..||+++|||||.|.+..++.+|+..|||..++.++|++.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR---dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR---DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccc---cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 47899999999999999999999999988889984 788999999999999999999999999999999999998753
No 88
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.04 E-value=8.9e-06 Score=87.53 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.+.+.+||||+.+.+|.+.+...|..||.|..|.|. .+..+|+++||+||+|.+...++.|+. |||..|.|+.|.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~---~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVP---KDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeee---ccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 346889999999999999999999999999999998 477788899999999999999999996 9999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|-+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 997655
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.99 E-value=5.2e-06 Score=92.61 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=69.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++||||+|++.++++.|+..|++||.|..|.||. +..++++++|+||+|.+.....+++ ...-..|.|+.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~---d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMR---DPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEec---cCCCCCcccccceecCCCcchheee-cccccccCCccccce
Confidence 468999999999999999999999999999999995 7778999999999999999888887 444566888887776
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
-|.+.
T Consensus 81 ~av~r 85 (311)
T KOG4205|consen 81 RAVSR 85 (311)
T ss_pred eccCc
Confidence 65443
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=5.6e-06 Score=87.37 Aligned_cols=72 Identities=22% Similarity=0.412 Sum_probs=66.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
..+|||+||+.+.+.+|+.+|..||.|..|.+. .|||||.|.+..+|.-|+..+||..|.|-.+.|.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 468999999999999999999999999999887 389999999999999999999999999988999997
Q ss_pred cCC
Q 002060 266 KSV 268 (973)
Q Consensus 266 k~~ 268 (973)
+..
T Consensus 71 r~~ 73 (216)
T KOG0106|consen 71 RGK 73 (216)
T ss_pred ccc
Confidence 643
No 91
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.83 E-value=2e-05 Score=88.06 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=73.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+..+|||+||+++++.+|+..|.+||.|..+.||+ |..+.+.++||||.|.+.+.+..++ ...-..|+|+.+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~---d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMY---DKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEee---cccccccccceeeEeccccccceec-ccceeeecCceeeEe
Confidence 367899999999999999999999999999999995 7788999999999999999999986 778889999999998
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
-|-+..
T Consensus 172 rA~pk~ 177 (311)
T KOG4205|consen 172 RAIPKE 177 (311)
T ss_pred eccchh
Confidence 876553
No 92
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.78 E-value=3.5e-05 Score=89.07 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=65.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
..+|||.|||+++++.+|.++|..||+|+...|.. + . ..++..+||||+|.+...++.||.+ +-..|+|++|.|.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v-r-~-~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV-R-S-PGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE-e-c-cCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 45699999999999999999999999999998874 1 1 1233449999999999999999955 46779999999986
Q ss_pred ecC
Q 002060 265 GKS 267 (973)
Q Consensus 265 ak~ 267 (973)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 443
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.74 E-value=1.1e-05 Score=83.70 Aligned_cols=75 Identities=27% Similarity=0.253 Sum_probs=66.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
-.||||+|+...|+|+.|.++|-+.|+|..|.|...+ .+..+ ||||.|.++-...-|+..|||..+.+.+|.|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~----d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ----DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc----cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4789999999999999999999999999999987422 33445 999999999999999999999999999988875
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=1.8e-05 Score=91.78 Aligned_cols=71 Identities=27% Similarity=0.386 Sum_probs=64.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
..+.+|+|-|||..|++++|..+|+.||.|..|+.- ...++..||+|.+..+|++|+++|++..+.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--------~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--------PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--------cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356889999999999999999999999999986554 24578999999999999999999999999999988
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.65 E-value=0.0002 Score=80.31 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=70.3
Q ss_pred ccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
++.|.|.||.. .||++.|..+|+-||.|..|+|++.+ +--|.|.|.+...|+-|+..|+|..|.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--------kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--------KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--------CcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 67899999984 68999999999999999999999722 3578999999999999999999999999999999
Q ss_pred eecCCCC
Q 002060 264 WGKSVAL 270 (973)
Q Consensus 264 ~ak~~~~ 270 (973)
++|...+
T Consensus 369 ~SKH~~v 375 (492)
T KOG1190|consen 369 LSKHTNV 375 (492)
T ss_pred eccCccc
Confidence 9987643
No 96
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.51 E-value=0.00024 Score=84.25 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 002060 820 NEEQRQKLRRLEVSLIEYRESLE 842 (973)
Q Consensus 820 ~ee~r~~~~~~~~~~~~~~~~~e 842 (973)
++|.|.+|+.++-+.+.++.+++
T Consensus 700 ~de~~~~~~~~~ss~~~~~d~l~ 722 (877)
T KOG0151|consen 700 DDEDRDKLRDIESSGSDNQDELE 722 (877)
T ss_pred chhhhHHHhhhhhhccccccccC
Confidence 67778888888888888777766
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.47 E-value=9.3e-05 Score=77.20 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=57.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~ 256 (973)
....||||.||.++|||++|+.+|+.|-...-++|.- ......|||.|.+.+.|..||..|+|..|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-------~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-------RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-------CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3467899999999999999999999999888788862 124568999999999999999999998763
No 98
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.36 E-value=0.00097 Score=62.43 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC----CeE
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY----EYE 259 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~f--G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~----Gr~ 259 (973)
|||-|-|||...|.++|.+++... |...-+-+. .|-.++.+.|||||.|.+...|..-...++|..|. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP---iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP---IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee---eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 899999999999999999988532 444433333 57778889999999999999999999999999985 578
Q ss_pred EEEEeecCC
Q 002060 260 LKIGWGKSV 268 (973)
Q Consensus 260 LkV~~ak~~ 268 (973)
+.|.||+-+
T Consensus 79 c~i~yAriQ 87 (97)
T PF04059_consen 79 CEISYARIQ 87 (97)
T ss_pred EEEehhHhh
Confidence 899998755
No 99
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.34 E-value=0.00072 Score=61.01 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=49.1
Q ss_pred cEEEEeCCCCCCCHH----HHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 186 TNLYVGNLSPQVDEN----FLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 186 ttLfVgNLp~~vtE~----~L~~lF~~fG~-I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
+.|||.|||...+.. -|..|+.-||. |.+| . .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 679999999998875 47788989976 4332 2 4789999999999999999999999999999
Q ss_pred EEEee
Q 002060 261 KIGWG 265 (973)
Q Consensus 261 kV~~a 265 (973)
.|.|.
T Consensus 70 ~v~~~ 74 (90)
T PF11608_consen 70 SVSFS 74 (90)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 99995
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.33 E-value=0.00067 Score=71.50 Aligned_cols=80 Identities=21% Similarity=0.464 Sum_probs=71.3
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC-C
Q 002060 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-E 257 (973)
Q Consensus 179 d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~-G 257 (973)
....+++..||+.|||..++.+.|..+|.+|.....|+++.++ ++.|||+|.+...|..|...++|..|- .
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~ 211 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKK 211 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccC
Confidence 3345678899999999999999999999999999999999643 689999999999999999999999987 8
Q ss_pred eEEEEEeec
Q 002060 258 YELKIGWGK 266 (973)
Q Consensus 258 r~LkV~~ak 266 (973)
..|.|.+++
T Consensus 212 ~~m~i~~a~ 220 (221)
T KOG4206|consen 212 NTMQITFAK 220 (221)
T ss_pred ceEEecccC
Confidence 889988875
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.00027 Score=82.91 Aligned_cols=81 Identities=14% Similarity=0.327 Sum_probs=75.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
...+|||+||..+++.++.++...||++....++ .+..+|.++||||.+|.+......|+..|||+.++++.|.|..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv---~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV---KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheee---cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4679999999999999999999999999999988 5777899999999999999999999999999999999999998
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
|-..
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 7544
No 102
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.26 E-value=0.00024 Score=79.07 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=75.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEE-----EeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK-----IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVk-----I~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~ 256 (973)
....-+|||.+||..+++.+|..+|.++|.|..=+ .++-.++.+|+..++-|.|+|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45578899999999999999999999999985422 1122267899999999999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 002060 257 EYELKIGWGKSV 268 (973)
Q Consensus 257 Gr~LkV~~ak~~ 268 (973)
|+.|+|..|...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999888654
No 103
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.23 E-value=0.00013 Score=81.27 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=60.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 187 tLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.|.|.||.+.+|-+++..||+-.|.|..++++..-.+..-......|||.|.+...+..| +.|.++++-++.|.|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEE
Confidence 789999999999999999999999999999984111111123345789999999999988 5888888777766653
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.23 E-value=0.0012 Score=72.49 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=62.3
Q ss_pred ccEEEEeCCCCCCCHHH----H--HHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 185 TTNLYVGNLSPQVDENF----L--LRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~----L--~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~-gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
..-+||-+||+.+..++ | .++|++||.|..|.|-. ++.........+ .||+|.+.++|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk-kt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK-KTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc-cccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 45689999999887655 3 37899999998887753 111111111112 2999999999999999999999999
Q ss_pred eEEEEEeecC
Q 002060 258 YELKIGWGKS 267 (973)
Q Consensus 258 r~LkV~~ak~ 267 (973)
+.|+..||..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999999864
No 105
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.12 E-value=0.00022 Score=82.99 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
....|+|+--|+..+++.+|.++|+.+|.|..|.|+ +|..+++++|.|||+|.+......|| .|.|..+.|.+|.|
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI---~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRII---GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEee---ccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 347889999999999999999999999999999999 67889999999999999999999998 99999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
....+
T Consensus 253 q~sEa 257 (549)
T KOG0147|consen 253 QLSEA 257 (549)
T ss_pred cccHH
Confidence 76433
No 106
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.88 E-value=0.00031 Score=78.42 Aligned_cols=7 Identities=43% Similarity=0.477 Sum_probs=2.7
Q ss_pred EEEeCCC
Q 002060 188 LYVGNLS 194 (973)
Q Consensus 188 LfVgNLp 194 (973)
+||++++
T Consensus 55 cyVkf~d 61 (479)
T KOG4676|consen 55 CYVKFLD 61 (479)
T ss_pred EEEeccC
Confidence 3333333
No 107
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.63 E-value=0.0012 Score=73.45 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.+-++|+||+..+++++|..+|..+|.|..|++. +++.++..++||||.|++...+..|+.. +...+.|+++.|.+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~---~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP---TDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccC---CCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4455599999999999999999999999999998 5778999999999999999999999877 88899999999999
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
+.+.
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 7765
No 108
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.0017 Score=68.96 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=61.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..+.|+|-||+..+..++|...|.++|.+..+.++ .+++||.|....+|..|+..|+|..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 46789999999999999999999999999554443 589999999999999999999999999999999
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.44 E-value=0.0084 Score=73.51 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=71.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC--eEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G--r~Lk 261 (973)
.+|.+|||+|++.+....|...|..||+|..|.+- +.-.|++|.|.+...++.|+..|-|..|+| ++|.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecc---------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 47889999999999999999999999999886664 245799999999999999999999999988 7899
Q ss_pred EEeecCCCCCCC
Q 002060 262 IGWGKSVALPSQ 273 (973)
Q Consensus 262 V~~ak~~~~p~~ 273 (973)
|.||..+..+++
T Consensus 525 vdla~~~~~~Pq 536 (975)
T KOG0112|consen 525 VDLASPPGATPQ 536 (975)
T ss_pred cccccCCCCChh
Confidence 999988765444
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.32 E-value=0.0038 Score=70.91 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=61.9
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCC---CCccccCC-------cccEEEEEeCCHHHHHHH
Q 002060 177 SFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWP---RTEEERRR-------QRNCGFVAFMNRADGQAA 246 (973)
Q Consensus 177 s~d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~p---r~d~~tg~-------~rg~gFV~F~~~~dA~~A 246 (973)
.++.+..+..+|.+.|||.+-.-+-|.++|+.||.|++|+|..| ..+..... .+-||||+|...+.|..|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 45566667899999999999888999999999999999999976 22221111 256899999999999999
Q ss_pred HHHhCCcE
Q 002060 247 KDEMQGVV 254 (973)
Q Consensus 247 i~~lnG~~ 254 (973)
...|+...
T Consensus 303 ~e~~~~e~ 310 (484)
T KOG1855|consen 303 RELLNPEQ 310 (484)
T ss_pred HHhhchhh
Confidence 87775443
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.17 E-value=0.0093 Score=67.45 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe-E
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY-E 259 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr-~ 259 (973)
.-|++.+|.++|+|+.++|++|+.+|..-|...+....+ ++.+.++.+.+.+.++|-.|+-.|+...+++. -
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~h 482 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGENHH 482 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCCCce
Confidence 456788999999999999999999999888875554443 34678999999999999999999999999876 8
Q ss_pred EEEEeecC
Q 002060 260 LKIGWGKS 267 (973)
Q Consensus 260 LkV~~ak~ 267 (973)
|+|+|++.
T Consensus 483 lRvSFSks 490 (492)
T KOG1190|consen 483 LRVSFSKS 490 (492)
T ss_pred EEEEeecc
Confidence 99999875
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.14 E-value=0.018 Score=64.38 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=65.1
Q ss_pred CccEEEEeCCC--CCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC--eE
Q 002060 184 QTTNLYVGNLS--PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YE 259 (973)
Q Consensus 184 ~~ttLfVgNLp--~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G--r~ 259 (973)
.+..|.+.=|+ +.+|-+.|..+....|.|..|.|+. +.---|.|+|.+.+.|++|..+|||..|.. ..
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--------kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--------KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--------ccceeeEEeechhHHHHHHHhhccccccccccee
Confidence 45556655555 5789999999999999999999983 234578999999999999999999999754 89
Q ss_pred EEEEeecCCC
Q 002060 260 LKIGWGKSVA 269 (973)
Q Consensus 260 LkV~~ak~~~ 269 (973)
|+|.|||+..
T Consensus 191 LKIeyAkP~r 200 (494)
T KOG1456|consen 191 LKIEYAKPTR 200 (494)
T ss_pred EEEEecCcce
Confidence 9999999763
No 113
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.07 E-value=0.011 Score=56.22 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=38.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
+.|+|.+++..++-++|+.+|+.||.|..|.+.. .-.-|||-|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---------G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---------GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---------T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---------CCCEEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999988873 3357899999999999999876544
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.06 E-value=0.0035 Score=67.17 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=60.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcccc--------CCccc----EEEEEeCCHHHHHHHHHHhC
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER--------RRQRN----CGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~t--------g~~rg----~gFV~F~~~~dA~~Ai~~ln 251 (973)
.+-.||++||||.+...-|+++|+.||.|-.|-+.+ +..+ |.+.+ =|+|+|.+-..|......||
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqp---E~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQP---EDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecc---hhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 356799999999999999999999999999998874 2222 22222 27899999999999999999
Q ss_pred CcEECCeE
Q 002060 252 GVVVYEYE 259 (973)
Q Consensus 252 G~~i~Gr~ 259 (973)
|..|+|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99999974
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.04 E-value=0.016 Score=68.37 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=54.5
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 201 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 201 ~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
+++.-+++||.|.+|.|..|-.+....-+-|.-||+|.+.+++++|+.+|.|..+.|+.+...|
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 4566789999999999987643444455667889999999999999999999999999999887
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.97 E-value=0.12 Score=58.01 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=71.5
Q ss_pred CCCCccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 181 GDPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
+..+.+.+.|-+|.. .++-+.|..+|..||.|..|++|.- ..|.|.|++.+....++|+..||+..+.|.+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT--------k~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT--------KPGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec--------ccceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 445688999999986 5677899999999999999999951 3578999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 002060 260 LKIGWGKSVAL 270 (973)
Q Consensus 260 LkV~~ak~~~~ 270 (973)
|.|.+++...+
T Consensus 355 l~v~~SkQ~~v 365 (494)
T KOG1456|consen 355 LNVCVSKQNFV 365 (494)
T ss_pred EEEeecccccc
Confidence 99999876544
No 117
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=95.91 E-value=0.0026 Score=69.85 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhccc--cHHHHHHHHHHHhhccC
Q 002060 464 QIKEAMGFALDNAD--AAGEIVEVLTESLTLKE 494 (973)
Q Consensus 464 sI~~~m~w~l~ha~--~a~eIv~~i~~~l~~~~ 494 (973)
+|...--|-.+-.+ ...+||+-|.-.+.-.+
T Consensus 65 NIlsS~YfKv~LyelktyhevideIyyqVkHvE 97 (453)
T KOG2888|consen 65 NILSSYYFKVNLYELKTYHEVIDEIYYQVKHVE 97 (453)
T ss_pred HhhhhhhhhhhhhhhhhHHHHHHHHHHHHhccC
Confidence 44444444433332 37788888887776544
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.83 E-value=0.0027 Score=77.58 Aligned_cols=95 Identities=24% Similarity=0.356 Sum_probs=76.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
...+.|||+|||+..+++.+|+..|..||.|.+|.|-.|+ -+..--||||.|.+...+-.|+..+.|..|....++
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3457899999999999999999999999999999998654 234557999999999999999999999998877888
Q ss_pred EEeecCCCCCCCCCCCCCC
Q 002060 262 IGWGKSVALPSQALPAPPP 280 (973)
Q Consensus 262 V~~ak~~~~p~~~~~~ppp 280 (973)
++++.....+.......++
T Consensus 445 ~glG~~kst~ttr~~sggl 463 (975)
T KOG0112|consen 445 IGLGQPKSTPTTRLQSGGL 463 (975)
T ss_pred ccccccccccceeeccCCC
Confidence 8888544334444433333
No 119
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.75 E-value=0.044 Score=63.65 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=63.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
..-|-+-+||+.+|+++|..+|+-|+ |.++.+. ..+|+..|=|||+|.+.++++.|+ ..|-..+..+-|.|--
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-----r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-----RRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-----ccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 35577889999999999999999985 5665555 346889999999999999999998 6777788888888865
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
+...
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 5433
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.51 E-value=0.0025 Score=75.63 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=58.4
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHh
Q 002060 781 LGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHR 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~~~~~ee~g~~~~ee~~~~~~~~r 860 (973)
-||+|+.||+||+|++++++++ .||||++ |.-+| ...|.+|..++|-|. +++..|+..-++..|
T Consensus 24 SGL~IPdGgVHIIGGe~GeaFI-~FsTDeD----ARlaM-~kdr~~i~g~~VrLl----------LSSksEmq~vIe~~r 87 (944)
T KOG4307|consen 24 SGLKIPDGGVHIIGGEEGEAFI-GFSTDED----ARLAM-TKDRLMIHGAEVRLL----------LSSKSEMQSVIEARR 87 (944)
T ss_pred cccccCCCceEEecccccceEE-Eecccch----hhhhh-hhcccceecceEEEE----------eccHHHHHHHHHHHH
Confidence 3899999999999999999998 9999999 67777 777899999998887 888888888888777
Q ss_pred hhh
Q 002060 861 KRL 863 (973)
Q Consensus 861 ~~~ 863 (973)
+..
T Consensus 88 kaa 90 (944)
T KOG4307|consen 88 KAA 90 (944)
T ss_pred HHH
Confidence 654
No 121
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.38 E-value=0.031 Score=46.60 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHH
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai 247 (973)
+.|-|.+.++...+..|. .|..||.|..+.+- ....+.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~---------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP---------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC---------CCCcEEEEEECCHHHHHhhC
Confidence 568899999887766665 88889999887664 24678999999999999985
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.26 E-value=0.04 Score=65.02 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=64.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhcc-CCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE---CCe
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YEY 258 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~-fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i---~Gr 258 (973)
+.+..|||.||-.-+|.-+|+.++++ +|.|... +| | +-+..|||.|.+.++|.+-..+|||+.| +++
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm----D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM----D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH----H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 34678999999999999999999995 5556665 44 3 2456789999999999999999999997 678
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
.|.+.|+..-
T Consensus 513 ~L~adf~~~d 522 (718)
T KOG2416|consen 513 HLIADFVRAD 522 (718)
T ss_pred eeEeeecchh
Confidence 8999998754
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.043 Score=64.10 Aligned_cols=64 Identities=23% Similarity=0.506 Sum_probs=50.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC--Cccc---EEEEEeCCHHHHHHHHHHhC
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRN---CGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg--~~rg---~gFV~F~~~~dA~~Ai~~ln 251 (973)
...||||+||++++|+.|...|..||.+ .+-||+.....+ -.+| |.|..|.++.....-+.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~---~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV---KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce---EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 5789999999999999999999999985 566775333322 2456 99999999998887665554
No 124
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=95.00 E-value=0.033 Score=65.42 Aligned_cols=36 Identities=6% Similarity=0.273 Sum_probs=15.2
Q ss_pred eeeeccccccCCCCCCchhhHHHHHHhhHHHHHHHH
Q 002060 505 MLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFN 540 (973)
Q Consensus 505 YLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l~ 540 (973)
|..--|++.-...+.....|+..+-.-.-.|...+.
T Consensus 221 yf~ds~~~ql~~~~~~~~~~~~~~~~~y~~~~~~~~ 256 (757)
T KOG4368|consen 221 YFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQ 256 (757)
T ss_pred chhHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Confidence 444444433333344444455444444444443333
No 125
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.94 E-value=0.11 Score=48.99 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=51.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCC-----ccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRT-----EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~-----d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
.+-|.|-+.|+. .-..+...|++||.|.+..-+. +. ........++-.|.|.++.+|.+|| .-||.++.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~-~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVL-RSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccc-ccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 466889999988 5567778899999997764110 00 0000124578899999999999998 88999999854
Q ss_pred -EEEEeec
Q 002060 260 -LKIGWGK 266 (973)
Q Consensus 260 -LkV~~ak 266 (973)
+-|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466653
No 126
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=94.64 E-value=0.016 Score=64.42 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 002060 831 EVSLIEYRESLE 842 (973)
Q Consensus 831 ~~~~~~~~~~~e 842 (973)
.+.-++.|+.+.
T Consensus 214 HlGy~~iR~~l~ 225 (319)
T KOG0796|consen 214 HLGYVLIREKLA 225 (319)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.64 E-value=0.087 Score=63.20 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=65.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCee-EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIA-SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~-sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+.|-|.|+|++++-+++.++|.-|-.+- +|.|-+ .+.|...|-|.|+|++.++|.+|...|++..|..+.++|.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~----nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR----NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEee----cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 34789999999999999999999997764 455543 4467888999999999999999999999999999999986
Q ss_pred e
Q 002060 264 W 264 (973)
Q Consensus 264 ~ 264 (973)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 5
No 128
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.61 E-value=0.044 Score=60.84 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=65.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCC--eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe-EEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY-ELK 261 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~--I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr-~Lk 261 (973)
.-.+|||||-+.+|+++|.+.....|- |..+|+.- +...|.++|||.|...+......-+..|--..|+|+ +..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE---NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE---NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh---cccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 457999999999999999988877664 67777773 556789999999999999999999999999999995 455
Q ss_pred EEeec
Q 002060 262 IGWGK 266 (973)
Q Consensus 262 V~~ak 266 (973)
+.|.|
T Consensus 157 ~~~NK 161 (498)
T KOG4849|consen 157 LSYNK 161 (498)
T ss_pred eccch
Confidence 55554
No 129
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.41 E-value=0.11 Score=58.18 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=58.6
Q ss_pred ccEEEEeCCCC----CCC-------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 185 TTNLYVGNLSP----QVD-------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 185 ~ttLfVgNLp~----~vt-------E~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
.++|.|.|+=. ..+ .++|.+-..+||.|.+|.|. . ..+.|.+-|.|.+.++|..||..|+|.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d------~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D------RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c------cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 46777877731 223 24667778999999999887 2 246799999999999999999999999
Q ss_pred EECCeEEEEEe
Q 002060 254 VVYEYELKIGW 264 (973)
Q Consensus 254 ~i~Gr~LkV~~ 264 (973)
.++|+.|....
T Consensus 338 ~fdgRql~A~i 348 (382)
T KOG1548|consen 338 WFDGRQLTASI 348 (382)
T ss_pred eecceEEEEEE
Confidence 99999988764
No 130
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=94.35 E-value=0.11 Score=42.21 Aligned_cols=40 Identities=48% Similarity=0.674 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhhhcc
Q 002060 826 KLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESE 866 (973)
Q Consensus 826 ~~~~~~~~~~~~~~~~ee~g~~~~ee~~~~~~~~r~~~~~~ 866 (973)
+.|+||++++++|+++|++|. +-++++.++...|..+...
T Consensus 5 rkR~IElk~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 349999999999999999999 6699999999998876543
No 131
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.097 Score=61.60 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=56.5
Q ss_pred cEEEEeCCCCCCC------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC-e
Q 002060 186 TNLYVGNLSPQVD------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-Y 258 (973)
Q Consensus 186 ttLfVgNLp~~vt------E~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G-r 258 (973)
+.|+|.|+|---. ...|..+|+++|.|..+-+.. ++.+| .+||.|++|.+..+|+.|++.|||+.|+- +
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~---~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI---DEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc---CccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 6788988874322 135778999999987766542 44444 89999999999999999999999999865 4
Q ss_pred EEEEE
Q 002060 259 ELKIG 263 (973)
Q Consensus 259 ~LkV~ 263 (973)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 44444
No 132
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.07 E-value=0.21 Score=50.17 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=45.6
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEeec
Q 002060 201 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 266 (973)
Q Consensus 201 ~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ak 266 (973)
.|.+.|..||.|.-|+++- +.-+|+|.+-..|-+|+ .|+|..++|+.|+|..-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCC
Confidence 6778899999999999982 45699999999999997 999999999999998643
No 133
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.1 Score=61.05 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=57.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 249 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~-~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ 249 (973)
...|||||+||.-++.++|..+|. -||.|.-|-|= +|++-+.++|-|=|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID---tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID---TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec---cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 478999999999999999999997 79999999997 6777788999999999999999999854
No 134
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=93.78 E-value=0.086 Score=58.70 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002060 821 EEQRQKLRRLEVSLIEY 837 (973)
Q Consensus 821 ee~r~~~~~~~~~~~~~ 837 (973)
..-|.+|.+++..+...
T Consensus 218 ~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 218 VLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44577777777665544
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.68 E-value=0.18 Score=52.83 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=46.6
Q ss_pred CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CcEECCeEEEEEeecCCCC
Q 002060 198 DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYELKIGWGKSVAL 270 (973)
Q Consensus 198 tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln--G~~i~Gr~LkV~~ak~~~~ 270 (973)
....|..+|..|+.+....++. +-+-..|.|.+.+.|..|...|+ +..++|..|+|.||....+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcC---------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 3478999999999998888873 33445899999999999999999 9999999999999966544
No 136
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=93.63 E-value=0.13 Score=59.79 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=59.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
...|-+-+||+.||+++|.++|+---.|...-++ .....+++.|=|||.|.+.+.|+.|+ .-|...|+-+-|.|--
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l---~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL---PMDQRGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFR 178 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceee---eccCCCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeeh
Confidence 3678899999999999999999876555542222 12345778899999999999999998 5556667777777765
Q ss_pred e
Q 002060 265 G 265 (973)
Q Consensus 265 a 265 (973)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.42 E-value=0.067 Score=60.86 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=57.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE-ECCeEEEEEe
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYELKIGW 264 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~-i~Gr~LkV~~ 264 (973)
..||+|||.+.++..+|..+|+..-.-.+-.+| ...||+||.+.+...|..|+..++|.+ +.|.++.|.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 358999999999999999999754211111122 136899999999999999999999986 8999999987
Q ss_pred ec
Q 002060 265 GK 266 (973)
Q Consensus 265 ak 266 (973)
.-
T Consensus 73 sv 74 (584)
T KOG2193|consen 73 SV 74 (584)
T ss_pred hh
Confidence 53
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.90 E-value=0.096 Score=64.42 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
...|||.|+|+..|.++|+.+|..+|.+.++.++. ...|+++|.+||.|.+..++.+++..+++..+.-+.+.|..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt----~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT----VRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh----hhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 57899999999999999999999999999998773 33678999999999999999999999998888888888877
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
+.+.
T Consensus 812 snp~ 815 (881)
T KOG0128|consen 812 SNPE 815 (881)
T ss_pred cCCc
Confidence 6553
No 139
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=92.28 E-value=0.16 Score=38.72 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=27.9
Q ss_pred hcCChhHHHHHHHhcCccccCChHHHHHHHhh
Q 002060 638 MNLPLSELERRCRHNGLSLVGGREMMVARLLS 669 (973)
Q Consensus 638 ~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~ 669 (973)
..|...+|...|+..||++.|.+.+||+||..
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKE 33 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 45667899999999999999999999999964
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.03 E-value=0.57 Score=53.12 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=63.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCC-eeE--EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGP-IAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~-I~s--VkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
+-.|-+-+||+..+-++|..+|+.|-. |.- |.++. ...|+..|-|||.|.+.++|.+|....+.+...++-|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~----N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL----NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE----cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 557899999999999999999998865 433 66653 34678899999999999999999988888877788888
Q ss_pred EEee
Q 002060 262 IGWG 265 (973)
Q Consensus 262 V~~a 265 (973)
|--+
T Consensus 356 vfp~ 359 (508)
T KOG1365|consen 356 VFPC 359 (508)
T ss_pred Eeec
Confidence 7544
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.82 E-value=0.015 Score=71.05 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=58.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
-.++||.||++.+.+.+|...|..+|.|..|.|. ....+++.+|+|||.|....++.+|+...+ ..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHH---HHhhccccccceeeEeecCCchhhhhhhhh-hhhhh
Confidence 4679999999999999999999999999888776 345678899999999999999999984444 44444
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.59 E-value=0.49 Score=47.11 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=58.0
Q ss_pred CCCccEEEEeCCCCCCCH-HHHH---HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 182 DPQTTNLYVGNLSPQVDE-NFLL---RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE-~~L~---~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
+|+-.||.|.=|..++.. ++|. .-.+.||+|.+|... ++..|.|.|.+..+|=.|+.+++. ...|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 456678888877766643 4444 456899999999887 467899999999999999999876 6788
Q ss_pred eEEEEEee
Q 002060 258 YELKIGWG 265 (973)
Q Consensus 258 r~LkV~~a 265 (973)
..+.+.|-
T Consensus 152 tm~qCsWq 159 (166)
T PF15023_consen 152 TMFQCSWQ 159 (166)
T ss_pred ceEEeecc
Confidence 89999983
No 143
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.91 E-value=0.48 Score=52.00 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=48.2
Q ss_pred HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 200 NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 200 ~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++...+++||.|..|-|.-....+..- ----||+|...++|..|+..|||..++|+.+...|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~de--avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDE--AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccch--hheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4577788999999998776321111111 12349999999999999999999999999888766
No 144
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.46 E-value=1.1 Score=40.88 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=41.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln 251 (973)
....||--..|...--.+|..+|+.||.| .|..+ .-..|||...+++.|..|+..+.
T Consensus 7 ~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWI----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEE----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEE----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 33445444599999999999999999997 46666 23568999999999999988775
No 145
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=90.41 E-value=0.39 Score=36.43 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=29.3
Q ss_pred hcCChhHHHHHHHhcCccccCChHHHHHHHhhh
Q 002060 638 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (973)
Q Consensus 638 ~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~ 670 (973)
..|...+|...|+..||.+.|.+..||.||..+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999999999653
No 146
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=89.84 E-value=0.55 Score=52.54 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=8.7
Q ss_pred hhhhhhcCChhHHHHHHH
Q 002060 633 AIKELMNLPLSELERRCR 650 (973)
Q Consensus 633 ~~~~~~~~~~~~l~~~c~ 650 (973)
.+..+++.+..+++-+|.
T Consensus 206 ~Wf~~Fd~~k~eid~ic~ 223 (367)
T KOG0835|consen 206 HWFKAFDTTKREIDEICY 223 (367)
T ss_pred cHHHHcCCcHHHHHHHHH
Confidence 344444445555555444
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=89.36 E-value=0.16 Score=54.89 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 201 FLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 201 ~L~~lF~-~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
+|...|. +||.|.+++|-. ...-.-.|-.+|.|...++|++|+..|||-.+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~----Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCD----NLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhc----ccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444445 999999987763 212234677899999999999999999999999999999873
No 148
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.28 E-value=0.16 Score=56.98 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=60.8
Q ss_pred cEEEEeCCCCCCCHH-HHH--HHhccCCCeeEEEEeCCCC-ccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 186 TNLYVGNLSPQVDEN-FLL--RTFGRFGPIASVKIMWPRT-EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 186 ttLfVgNLp~~vtE~-~L~--~lF~~fG~I~sVkI~~pr~-d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.-+||-+|++.+..+ .|. +.|++||.|.+|.+-.... ....+ ...-++|+|...++|..||...+|++++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~-~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSG-GTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCC-CCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457899999877544 444 5799999999988774221 00111 122379999999999999999999999999998
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
..++...
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887543
No 149
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.51 E-value=0.24 Score=59.10 Aligned_cols=54 Identities=24% Similarity=0.103 Sum_probs=32.1
Q ss_pred CCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEe
Q 002060 326 PPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382 (973)
Q Consensus 326 ~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl 382 (973)
||.-+.+.-+|+..|+||+++|..||+-+..+ ++-.|.|+- +..+|+.||-.+.
T Consensus 420 ip~~pd~~p~v~~~aE~Vaq~Gl~~e~S~~a~--~d~~~~f~~-pk~~y~~yy~~kk 473 (878)
T KOG1847|consen 420 IPELPDGDPGVIIRAEDVAQEGLAVEDSKHAF--GDVLPDFSA-PKEKYKMYYDKKK 473 (878)
T ss_pred CCCCCCCchHHHHHHHHHHhhchhhhhhhhhh--cccChhhcc-chhhhhhhhhhhh
Confidence 33345556666666666666666666666553 355555553 5666666666555
No 150
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.45 E-value=1 Score=43.16 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=68.0
Q ss_pred cCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHHH
Q 002060 460 LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESF 539 (973)
Q Consensus 460 ~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l 539 (973)
+...-|.++...+-+....+.+++..|.+.|... ....++--|+|+-=++.||... |...|....-. ...+
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~------f~~~i~~~~~~-~~l~ 86 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGER------FHQEVASNDFA-VELL 86 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHH------HHHHHHHhHHH-HHHH
Confidence 3455555555555556667899999999999654 4677888899999999999643 55555444321 1112
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHhhcc
Q 002060 540 NDLYRSITGRITAEALKERVLKVLQVWSD 568 (973)
Q Consensus 540 ~~~~~~~~~ri~ae~~k~kV~~vL~iWe~ 568 (973)
.-.|....|.......++++..|+..|.+
T Consensus 87 ~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 87 KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 21233445666778999999999999964
No 151
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=87.32 E-value=0.28 Score=59.98 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=6.7
Q ss_pred hccCCCCcccCC
Q 002060 776 RSSRGLGLSYSS 787 (973)
Q Consensus 776 ~~~~~~~~~~~~ 787 (973)
.++-|.|.+.+.
T Consensus 252 ~s~~~~g~~lp~ 263 (1194)
T KOG4246|consen 252 SSNPGYGVSLPP 263 (1194)
T ss_pred hcCCCcCCCCCC
Confidence 445566666555
No 152
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.24 E-value=0.47 Score=55.16 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=62.0
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVD-ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vt-E~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..+.|-+--.++.++ -.+|...|.+||.|..|.|-++ --.|.|+|.+..+|-.|. ...+.+|+++.|+|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---------hhhheeeeeccccccchh-ccccceecCceeEE
Confidence 356677777777764 5899999999999999998752 345799999999997775 78999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
-|-.+.
T Consensus 441 ~whnps 446 (526)
T KOG2135|consen 441 FWHNPS 446 (526)
T ss_pred EEecCC
Confidence 997654
No 153
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=86.77 E-value=0.66 Score=50.33 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=54.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
..|||-||+..++-+.|...|..||+|....++- ...++..+-++|.|...-.|..|+..+.-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~v----D~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKV----DDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeee----cccccccccchhhhhcchhHHHHHHHhccC
Confidence 7799999999999999999999999998765542 235667788999999999999999887533
No 154
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.66 E-value=0.99 Score=54.62 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=62.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
-|..-++||||+...+..+.+..+...||.|.+++++ .|||+.|....-+.+|+..+.-..++|..+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------------KFGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------------hhcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 4456789999999999999999999999999888776 2999999999999999999998889998877
Q ss_pred EEe
Q 002060 262 IGW 264 (973)
Q Consensus 262 V~~ 264 (973)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 654
No 155
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=84.05 E-value=1.2 Score=55.14 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=64.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE--CCeEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYELKI 262 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i--~Gr~LkV 262 (973)
..+.++.|.+-..+-..|..+|..||.|.++..++ .-+.+.|.|...+.|-.|+.+++|..+ -|-+.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---------~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLR---------DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRV 368 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecc---------cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeE
Confidence 34455566666777888999999999999988873 457899999999999999999999984 6889999
Q ss_pred EeecCCCC
Q 002060 263 GWGKSVAL 270 (973)
Q Consensus 263 ~~ak~~~~ 270 (973)
.+|+..++
T Consensus 369 ~~ak~~~~ 376 (1007)
T KOG4574|consen 369 SFAKTLPM 376 (1007)
T ss_pred Eecccccc
Confidence 99998754
No 156
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.62 E-value=2.9 Score=46.42 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=48.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
+=|-|-+.|+.-. ..|..+|.+||.|.++ +. +...++-+|.|.++.+|.+|| ..||+.|+|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkh--v~-------~~ngNwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKH--VT-------PSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeee--ec-------CCCCceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 4456667877644 4677789999999654 32 234578899999999999998 88999999865
No 157
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=82.90 E-value=2.9 Score=43.46 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=54.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~ 256 (973)
.-.|.|.+||+.-+.++|+.+.-..|.|.-..+.. -++|.|.|...++.+-|+..|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r----------Dg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR----------DGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec----------ccceeeeeeehhhHHHHHHhhcccccc
Confidence 45789999999999999999999999987777762 368999999999999999999987653
No 158
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=82.73 E-value=1.8 Score=48.01 Aligned_cols=15 Identities=20% Similarity=0.674 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 002060 552 AEALKERVLKVLQVW 566 (973)
Q Consensus 552 ae~~k~kV~~vL~iW 566 (973)
.++...++..-|.+|
T Consensus 74 ~e~~~~~~~~~l~~w 88 (335)
T KOG0113|consen 74 TEKIPHKLERRLKLW 88 (335)
T ss_pred hhhhHHHHHHHHHhc
Confidence 334444444444444
No 159
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=82.01 E-value=0.65 Score=54.49 Aligned_cols=20 Identities=15% Similarity=-0.032 Sum_probs=8.9
Q ss_pred CChhHHHHHHHh--cCccccCC
Q 002060 640 LPLSELERRCRH--NGLSLVGG 659 (973)
Q Consensus 640 ~~~~~l~~~c~~--~Gl~~~~~ 659 (973)
|++++...+.++ ++++..|.
T Consensus 207 ld~eq~~tlnkqg~~ygmk~g~ 228 (653)
T KOG2548|consen 207 LDDEQMETLNKQGEFYGMKYGD 228 (653)
T ss_pred CCHHHHHHHHhhhhhhccccch
Confidence 334444444444 54544443
No 160
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=79.32 E-value=0.66 Score=54.46 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=11.5
Q ss_pred ccccccccchhhHhhhcc
Q 002060 613 DTCDLSKTNQDTALAMGK 630 (973)
Q Consensus 613 d~~dg~~l~~~~~~~~~~ 630 (973)
-++|...||.+++--+.+
T Consensus 200 ve~D~~~ld~eq~~tlnk 217 (653)
T KOG2548|consen 200 VEFDSNDLDDEQMETLNK 217 (653)
T ss_pred cccccccCCHHHHHHHHh
Confidence 335778888877654443
No 161
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.84 E-value=9.1 Score=33.97 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=38.8
Q ss_pred EEEEeCCC--CCCCHHHHHHHhccCCC-----eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 187 NLYVGNLS--PQVDENFLLRTFGRFGP-----IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 187 tLfVgNLp--~~vtE~~L~~lF~~fG~-----I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
+||| |+. ..++..+|..++...+. |-.|.|. ..|.||+-.. +.|..++..|++..+.|++
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~ 68 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----------DNFSFVEVPE-EVAEKVLEALNGKKIKGKK 68 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------------SS-EEEEE-T-T-HHHHHHHHTT--SSS--
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----------eeEEEEEECH-HHHHHHHHHhcCCCCCCee
Confidence 4555 333 46788888888866544 6677777 3688998865 4788899999999999999
Q ss_pred EEEEee
Q 002060 260 LKIGWG 265 (973)
Q Consensus 260 LkV~~a 265 (973)
++|..|
T Consensus 69 v~ve~A 74 (74)
T PF03880_consen 69 VRVERA 74 (74)
T ss_dssp --EEE-
T ss_pred EEEEEC
Confidence 999764
No 162
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=78.41 E-value=6 Score=41.27 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=51.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhcc-CCCe---eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC--
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGR-FGPI---ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-- 257 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~-fG~I---~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G-- 257 (973)
..+.|-|-+|||++||+++...++. ++.. ..+.-..+.. ...-....-|||.|.+.+++..-+..++|..+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~-~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKK-SFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-S-SSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCc-cCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3578999999999999999998877 6665 3333112111 1111123458999999999999999999988732
Q ss_pred ---eEEEEEeecCCCC
Q 002060 258 ---YELKIGWGKSVAL 270 (973)
Q Consensus 258 ---r~LkV~~ak~~~~ 270 (973)
.+..|.+|-...+
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 4556666644433
No 163
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=76.72 E-value=4.4 Score=48.99 Aligned_cols=103 Identities=20% Similarity=0.371 Sum_probs=83.0
Q ss_pred HHHHHHHHhcc-cCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHH
Q 002060 449 DEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 527 (973)
Q Consensus 449 ~~le~lL~~Lt-~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~ 527 (973)
..+...|..|| ..+.-|...+.-+-||..+|..||+.|-..|... |...||-.+||+--|+-|-.+. |-..
T Consensus 7 ~dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~kc--pp~~kL~~~y~~dsi~knvg~p------y~~~ 78 (579)
T KOG2071|consen 7 RDYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAKC--PPSQKLPVMYLLDSIVKNVGSP------YTTA 78 (579)
T ss_pred HHHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhhC--CcccccchhhhhHHHHhhcCCc------chhh
Confidence 34667777784 7899999999999999999999999999988554 5779999999999999887644 8889
Q ss_pred HHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhc
Q 002060 528 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWS 567 (973)
Q Consensus 528 fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe 567 (973)
|...|-..|.+ +|... ++-.+-++.+++..|.
T Consensus 79 fs~~l~a~f~~---~~~~v-----d~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 79 FSRNLVATFIC---AFTKV-----DERTRTSLFKLRATWD 110 (579)
T ss_pred hhhhHHHHHHH---HHhhc-----cccccchhHhhHHhhc
Confidence 98888777753 34433 3455778999999998
No 164
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.52 E-value=9.5 Score=33.48 Aligned_cols=55 Identities=9% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 196 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 196 ~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.++-++++.-+..|+-. +|... ..|| ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d--------~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD--------RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec--------CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56778999999999763 33321 2467 99999999999999999999999988875
No 165
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=74.07 E-value=12 Score=32.58 Aligned_cols=54 Identities=11% Similarity=0.237 Sum_probs=41.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccC----CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRF----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM 250 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~f----G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~l 250 (973)
...|+|-++. +++.+++..+|..| ++ ..|.++- | ..|-|.|.+...|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWId---D-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWID---D-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEec---C-------CcEEEEECCHHHHHHHHHcC
Confidence 3578999985 57888999999888 44 4677772 1 24579999999999999765
No 166
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=73.20 E-value=9.5 Score=43.70 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=50.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccC----CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRF----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~f----G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
...|-+-+||+++++.++..+|..- |....|-++. .-.|+..|-|||.|..+++|+.|+.. |...|+-+-|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~----rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT----RPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE----CCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 3567888999999999999999733 2333444442 22467889999999999999999843 3333443433
Q ss_pred E
Q 002060 261 K 261 (973)
Q Consensus 261 k 261 (973)
.
T Consensus 236 E 236 (508)
T KOG1365|consen 236 E 236 (508)
T ss_pred H
Confidence 3
No 167
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.95 E-value=10 Score=39.48 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=56.4
Q ss_pred ccEEEEeCCCCCCCH-----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe-
Q 002060 185 TTNLYVGNLSPQVDE-----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 258 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE-----~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr- 258 (973)
.+++.+.+++..+-. .....+|-+|-...-..++ ++.+.--|.|.+...|..|...+++..+.|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---------RSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---------HhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 467888898876633 2344566666555444444 1334456899999999999999999999987
Q ss_pred EEEEEeecCCCCCC
Q 002060 259 ELKIGWGKSVALPS 272 (973)
Q Consensus 259 ~LkV~~ak~~~~p~ 272 (973)
.|++-|+.......
T Consensus 81 ~~k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 81 ELKLYFAQPGHPES 94 (193)
T ss_pred eEEEEEccCCCccc
Confidence 89998887765443
No 168
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=70.39 E-value=27 Score=33.75 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC---eEEE
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---YELK 261 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G---r~Lk 261 (973)
+.+.+...|..++-++|..+.+.+- .|..++|+. + ...++-.+.+.|.+..+|..-...+||+.++. ..+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir---d--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR---D--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEee---C--CCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 3444444445555556665555554 477889984 2 11245567899999999999999999998754 4455
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|-|-+.+
T Consensus 89 vvfV~~V 95 (110)
T PF07576_consen 89 VVFVKSV 95 (110)
T ss_pred EEEEEEE
Confidence 5554443
No 169
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.04 E-value=11 Score=45.36 Aligned_cols=81 Identities=26% Similarity=0.283 Sum_probs=59.3
Q ss_pred CccEEEEeCCCCC-CCHHHHHHHhccC----CCeeEEEEeCCC-----C--ccccCC-----------------------
Q 002060 184 QTTNLYVGNLSPQ-VDENFLLRTFGRF----GPIASVKIMWPR-----T--EEERRR----------------------- 228 (973)
Q Consensus 184 ~~ttLfVgNLp~~-vtE~~L~~lF~~f----G~I~sVkI~~pr-----~--d~~tg~----------------------- 228 (973)
.+.+|-|.|+.|. |...+|..+|..| |.|.+|+|.+-. . +..+|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999984 6789999998766 579999986410 0 001121
Q ss_pred --------------cccEEEEEeCCHHHHHHHHHHhCCcEECC--eEEEEEe
Q 002060 229 --------------QRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKIGW 264 (973)
Q Consensus 229 --------------~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G--r~LkV~~ 264 (973)
..-||.|.|.+...|......|+|..+.. ..|-+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11378999999999999999999999865 4555554
No 170
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=64.35 E-value=11 Score=45.31 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=51.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHh-ccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE----CCeE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV----YEYE 259 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF-~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i----~Gr~ 259 (973)
.||+-|-|++...|-..|.+.- ...|.-.-+.+. .|=.+..+.|||||.|.+.+++..+.+++||+.| ..+.
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLP---iDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLP---IDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEec---cccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 3555555555555544444332 123333333332 3434456789999999999999999999999986 3466
Q ss_pred EEEEeecCC
Q 002060 260 LKIGWGKSV 268 (973)
Q Consensus 260 LkV~~ak~~ 268 (973)
+.|.||+.+
T Consensus 465 a~itYArIQ 473 (549)
T KOG4660|consen 465 ASITYARIQ 473 (549)
T ss_pred eeeehhhhh
Confidence 778887755
No 171
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=62.80 E-value=4.4 Score=45.49 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=64.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..+++|+|++...+.+.....+|..+|.+..+.... ......+++++.|.|...+.+..|+.......+.++.+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~---~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSS---LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhh---hccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 468899999999999999999999999877766552 34566789999999999999999985544457777776666
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
.....
T Consensus 164 l~~~~ 168 (285)
T KOG4210|consen 164 LNTRR 168 (285)
T ss_pred ccccc
Confidence 55443
No 172
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=62.13 E-value=2.1 Score=52.33 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=53.6
Q ss_pred CchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeec
Q 002060 328 EDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 386 (973)
Q Consensus 328 ~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~ 386 (973)
.-+..+.+|+.++.+|.-.+.+.+-++|+--+.||.|.||-|..+-++.||+-+|-++.
T Consensus 528 ~~a~~rvv~~i~~~~~~~~~~~L~~~~~tl~k~~pa~~Flsd~ns~e~~yyk~k~aeI~ 586 (988)
T KOG0965|consen 528 QRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEIQ 586 (988)
T ss_pred cCCCceeeeehhhhHHhhccccccHHHHHHhhhchhhhhhcchhhhHHHHhccccHHHH
Confidence 45567788999999999999999999999999999999999999999999999997765
No 173
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=60.96 E-value=6.7 Score=46.92 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=2.6
Q ss_pred CCcccCC
Q 002060 781 LGLSYSS 787 (973)
Q Consensus 781 ~~~~~~~ 787 (973)
||+.|.+
T Consensus 348 ~g~~~e~ 354 (538)
T KOG1049|consen 348 LGPNEES 354 (538)
T ss_pred cCcCCCC
Confidence 3333333
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=60.16 E-value=12 Score=44.70 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=53.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhc--cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC--cEECCeE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFG--RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYE 259 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~--~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG--~~i~Gr~ 259 (973)
..|.|.+--||.++-.++++.||. .|-.+.+|.+-. +-++ ||+|++..||+.|.+.|.- +.|.|++
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~---------N~nW-yITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH---------NDNW-YITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee---------cCce-EEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 467789999999999999999995 578888888763 2344 9999999999999877653 2355655
Q ss_pred EEE
Q 002060 260 LKI 262 (973)
Q Consensus 260 LkV 262 (973)
|..
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 543
No 175
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=59.49 E-value=4.7 Score=45.41 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=8.5
Q ss_pred CHHHHHHHhccCCCee
Q 002060 198 DENFLLRTFGRFGPIA 213 (973)
Q Consensus 198 tE~~L~~lF~~fG~I~ 213 (973)
+|..|...|..-+.|.
T Consensus 100 NE~kLn~AF~~s~~Vi 115 (441)
T KOG1902|consen 100 NEKKLNLAFRSSRSVI 115 (441)
T ss_pred cHHHHHHHHhhcCcEE
Confidence 3455555565555543
No 176
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=58.73 E-value=1.6 Score=50.14 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=62.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
...+-|.|+|+....+.|..|...||.+..|..+. ++.++. .--|+|...+.+..||..++|..+....++|+|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn--t~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN--TDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc--cchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34588999999999999999999999999986653 444442 234789999999999999999999999999988
No 177
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.12 E-value=2.7 Score=47.47 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHH
Q 002060 531 TLPDIMESFNDL 542 (973)
Q Consensus 531 ~Lp~if~~l~~~ 542 (973)
-|.-||+.++.+
T Consensus 255 DLeiIFSrFG~i 266 (479)
T KOG0415|consen 255 DLEIIFSRFGKI 266 (479)
T ss_pred chhhHHhhcccc
Confidence 366788777644
No 178
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=51.94 E-value=3.6 Score=43.89 Aligned_cols=69 Identities=35% Similarity=0.522 Sum_probs=55.5
Q ss_pred CCCccEEEEeC----CCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE
Q 002060 182 DPQTTNLYVGN----LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (973)
Q Consensus 182 dp~~ttLfVgN----Lp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~ 254 (973)
++...+++.|| |...++++.+...|+..|++..++|-. +. .|++++++||.+......-.|+...++..
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~---~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPT---DN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccc---cc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 34457788888 888999999999999999999999874 22 27899999999988877777776665543
No 179
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.52 E-value=32 Score=34.27 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=53.2
Q ss_pred ccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHHHHHHHhhhhccccHHH
Q 002060 475 NADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEA 554 (973)
Q Consensus 475 ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~ 554 (973)
....+.+++.+|.+.|... +....+.-|.|+-=++.||... |...+-.. .++..|..+... .-..+.
T Consensus 36 ~~~~~kea~~~l~krl~~~--~~~vq~~aL~lld~lvkNcg~~------f~~ev~~~--~fl~~l~~l~~~---~~~~~~ 102 (140)
T PF00790_consen 36 SPDGAKEAARALRKRLKHG--NPNVQLLALTLLDALVKNCGPR------FHREVASK--EFLDELVKLIKS---KKTDPE 102 (140)
T ss_dssp STTHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHSHHH------HHHHHTSH--HHHHHHHHHHHH---TTTHHH
T ss_pred CCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCCHH------HHHHHhHH--HHHHHHHHHHcc---CCCCch
Confidence 3455899999999999763 3556677789998899999532 43333221 222333332222 222333
Q ss_pred --HHHHHHHHHHhhccCc
Q 002060 555 --LKERVLKVLQVWSDWF 570 (973)
Q Consensus 555 --~k~kV~~vL~iWe~~~ 570 (973)
.+++++.+|..|....
T Consensus 103 ~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 103 TPVKEKILELLQEWAEAF 120 (140)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 8999999999998754
No 180
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.76 E-value=5 Score=43.91 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=54.0
Q ss_pred cEEEEeCCCC------------CCCHHHHHHHhccCCCeeEEEEeC--CCCccccCCc-----ccEE---------EEEe
Q 002060 186 TNLYVGNLSP------------QVDENFLLRTFGRFGPIASVKIMW--PRTEEERRRQ-----RNCG---------FVAF 237 (973)
Q Consensus 186 ttLfVgNLp~------------~vtE~~L~~lF~~fG~I~sVkI~~--pr~d~~tg~~-----rg~g---------FV~F 237 (973)
-|||+.+||- --++..|...|..||.|..|.|.- |-...-+|+. +||| ||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 4677777763 246788999999999998887642 2112233443 3443 3666
Q ss_pred CCHHHHHHHHHHhCCcEEC----C----eEEEEEeecCCCC
Q 002060 238 MNRADGQAAKDEMQGVVVY----E----YELKIGWGKSVAL 270 (973)
Q Consensus 238 ~~~~dA~~Ai~~lnG~~i~----G----r~LkV~~ak~~~~ 270 (973)
+...--..|+.+|.|..+. | -.++|+|.++.++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhl 270 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHL 270 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhh
Confidence 6666667788888887642 1 3566766665544
No 181
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=42.89 E-value=28 Score=33.95 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHhhccccHHHHHHHHHHHh-hccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHH
Q 002060 460 LERSQIKEAMGFALDNADAAGEIVEVLTESL-TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMES 538 (973)
Q Consensus 460 ~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l-~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~ 538 (973)
++-.-..+....+.++ ..+..|+++|.+.| .........++--|.||.-+|.|++. .|...|...+..|. .
T Consensus 19 p~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~------~~~~~~~~~~~~I~-~ 90 (125)
T PF01417_consen 19 PPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE------RFVDELRDHIDIIR-E 90 (125)
T ss_dssp --HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H------HHHHHHHHTHHHHH-G
T ss_pred cCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHh-h
Confidence 3444445555566555 77999999999999 44444456777789999999999963 46666655555443 2
Q ss_pred HHHHHhhh--hccccHHHHHHHHHHHHHh
Q 002060 539 FNDLYRSI--TGRITAEALKERVLKVLQV 565 (973)
Q Consensus 539 l~~~~~~~--~~ri~ae~~k~kV~~vL~i 565 (973)
|. .|..+ .|......++++...|+.+
T Consensus 91 l~-~f~~~d~~g~d~~~~VR~~A~~i~~l 118 (125)
T PF01417_consen 91 LQ-DFQYVDPKGKDQGQNVREKAKEILEL 118 (125)
T ss_dssp GG-G---BBTTSTBHHHHHHHHHHHHHHH
T ss_pred cc-eeeccCCCCccHHHHHHHHHHHHHHH
Confidence 21 12211 3445555688888888887
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.74 E-value=58 Score=38.48 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=56.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
.+.|+|-.+|..+|-.+|..+...|- .|.+++|+++. --++-...|.|.+..+|..-...+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-----~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-----MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-----CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999999999999998764 48899999521 1134456899999999999999999998754
No 183
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.80 E-value=43 Score=33.17 Aligned_cols=80 Identities=19% Similarity=0.400 Sum_probs=49.0
Q ss_pred cccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHHHHHHHhhhhccccHHHH
Q 002060 476 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEAL 555 (973)
Q Consensus 476 a~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~ 555 (973)
...+.+.+.+|.+.|.... ....+.-|-|+--++.||..+ |...+... .....|..+. ..+-..+..
T Consensus 32 ~~~~k~a~r~l~krl~~~n--~~v~l~AL~lLe~~vkNcg~~------f~~ev~s~--~fl~~L~~l~---~~~~~~~~V 98 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKN--PHVALLALTLLDACVKNCGSK------FHLEVASK--EFLNELVKLI---KPKYPLPLV 98 (133)
T ss_pred CccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHH------HHHHHHhH--HHHHHHHHHH---cCCCCcHHH
Confidence 3347899999999997533 455666688999999999633 32222111 1111111221 122233348
Q ss_pred HHHHHHHHHhhcc
Q 002060 556 KERVLKVLQVWSD 568 (973)
Q Consensus 556 k~kV~~vL~iWe~ 568 (973)
+++|+.+|..|..
T Consensus 99 k~kil~li~~W~~ 111 (133)
T smart00288 99 KKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 184
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=32.66 E-value=81 Score=31.13 Aligned_cols=81 Identities=11% Similarity=0.303 Sum_probs=52.3
Q ss_pred cccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHHHHHhhHHHHHHHHHHHhhhhccccHHHH
Q 002060 476 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEAL 555 (973)
Q Consensus 476 a~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~ 555 (973)
...+.+.+.+|.+.|... +....+.-|.|+-=++.||..+ |...+-. -..+..|..+.... -......
T Consensus 32 ~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~------f~~~i~s--~~fl~~l~~l~~~~--~~~~~~V 99 (133)
T cd03561 32 PNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKP------FHLQVAD--KEFLLELVKIAKNS--PKYDPKV 99 (133)
T ss_pred CCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChH------HHHHHhh--HHHHHHHHHHhCCC--CCCCHHH
Confidence 345889999999999764 3456666799999999999632 4333333 01111122222211 1356789
Q ss_pred HHHHHHHHHhhcc
Q 002060 556 KERVLKVLQVWSD 568 (973)
Q Consensus 556 k~kV~~vL~iWe~ 568 (973)
++++..+|..|..
T Consensus 100 k~kil~ll~~W~~ 112 (133)
T cd03561 100 REKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
No 185
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.46 E-value=1.1e+02 Score=38.77 Aligned_cols=46 Identities=15% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHhcccCHHHHHHHHHHHhhcccc--HHHHHHHHHHHh
Q 002060 442 TLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADA--AGEIVEVLTESL 490 (973)
Q Consensus 442 ~L~~~~r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~--a~eIv~~i~~~l 490 (973)
.|.+.-...|--+|-++...-+.|..|. |+.-+. +..+++-|++.|
T Consensus 695 ilDsKtaQnLsIflgS~rmpyeeik~~I---Levne~vLse~~iqnLik~l 742 (1102)
T KOG1924|consen 695 ILDSKTAQNLSIFLGSFRMPYEEIKNVI---LEVNEDVLSESMIQNLIKHL 742 (1102)
T ss_pred ecchHHHHHHHHHHhhccCCHHHHHHHH---hhccHHHHHHHHHHHHHHhC
Confidence 3555555566677776666666665543 332222 455555555554
No 186
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.12 E-value=60 Score=41.53 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=34.8
Q ss_pred eeeee-eeccccccCCCCCCchhhHHHHHHhhHHHHHHHHHHHhhh
Q 002060 502 ARLML-VSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSI 546 (973)
Q Consensus 502 a~LYL-inDILhns~~~v~na~~yR~~fe~~Lp~if~~l~~~~~~~ 546 (973)
.-||| +|-|||||+-+--+...||-.=|.++..||..+-.+|.-|
T Consensus 30 DNLYLDMNgIlHNCsH~nDddvt~rLtEeEif~~IfnYIdhLf~~I 75 (1493)
T KOG2045|consen 30 DNLYLDMNGILHNCSHPNDDDVTFRLTEEEIFQEIFNYIDHLFYLI 75 (1493)
T ss_pred cceeeecccccccCCCCCCCccCcCCCHHHHHHHHHHHHHHHHHhh
Confidence 45888 7999999986655566688888888888987777666543
No 187
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=23.15 E-value=79 Score=33.02 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=33.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeC
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMW 219 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~ 219 (973)
....+++++++++..++...+..+|..+|.+..+.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 34578999999999999999999999999997777663
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=22.59 E-value=8.1 Score=43.66 Aligned_cols=15 Identities=27% Similarity=-0.020 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhc
Q 002060 29 DETARLYAEFVESFQ 43 (973)
Q Consensus 29 ~eaA~vyeeFv~sF~ 43 (973)
.|+|-+|..--+.|.
T Consensus 5 ~e~~~l~~~~~q~~~ 19 (498)
T KOG4849|consen 5 DEAALLGDGNEQHDG 19 (498)
T ss_pred hhhhhhcCCcccccC
Confidence 456666665555554
No 189
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=22.38 E-value=1.1e+02 Score=34.07 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=40.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHH
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA 243 (973)
+.+..+-|||+||+.++.-.+|+..+.+-|-+ -..|.| .| +.+-||..|-+...+
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw------kg-~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW------KG-HFGKCFLHFGNRKGV 380 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEee------ec-CCcceeEecCCccCC
Confidence 34456789999999999999999998776653 345666 22 456679999886543
No 190
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=1.1e+02 Score=35.79 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=44.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHH
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKD 248 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~ 248 (973)
...|=|.++|...-.++|..+|..||.- .++|+| . ....+|-.|.+...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkW--v------DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKW--V------DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEE--e------ecceeEEeecchHHHHHHhh
Confidence 4678899999999889999999999873 456666 2 24578999999999999983
Done!