Query 002060
Match_columns 973
No_of_seqs 719 out of 3123
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 99.9 9.2E-26 3.2E-30 222.8 8.0 130 448-587 5-134 (142)
2 4fu3_A Regulation of nuclear P 99.9 6.1E-25 2.1E-29 215.0 6.0 128 447-587 5-132 (135)
3 4flb_A Regulation of nuclear P 99.9 3.1E-24 1.1E-28 209.3 6.5 125 446-585 5-129 (132)
4 1x4o_A Splicing factor 4; stru 99.8 7.9E-21 2.7E-25 168.1 1.3 72 320-391 5-76 (78)
5 1ug0_A Splicing factor 4; SURP 99.8 2.7E-20 9.3E-25 168.2 -0.2 71 321-391 16-86 (88)
6 4fxv_A ELAV-like protein 1; RN 99.7 9.3E-18 3.2E-22 155.2 10.7 82 183-267 17-98 (99)
7 1sz9_A PCF11 protein; RNA poly 99.7 6.5E-18 2.2E-22 166.9 9.6 126 446-587 7-138 (144)
8 3s8s_A Histone-lysine N-methyl 99.7 3.2E-16 1.1E-20 147.8 11.4 82 183-267 4-85 (110)
9 2e5h_A Zinc finger CCHC-type a 99.7 7.9E-16 2.7E-20 139.5 13.0 82 182-266 13-94 (94)
10 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-15 4.3E-20 143.7 14.7 86 182-270 12-97 (115)
11 2e60_A SFRS8 protein, splicing 99.7 1.8E-17 6.2E-22 153.2 2.0 68 322-390 17-84 (101)
12 2e5z_A SFRS8 protein, splicing 99.6 1.9E-17 6.6E-22 149.1 1.8 66 322-391 15-80 (90)
13 3md1_A Nuclear and cytoplasmic 99.6 9.7E-16 3.3E-20 135.6 11.1 81 185-268 1-81 (83)
14 2lxi_A RNA-binding protein 10; 99.6 2.7E-16 9.4E-21 142.9 7.5 82 185-269 1-84 (91)
15 2cqd_A RNA-binding region cont 99.6 3.1E-15 1E-19 141.4 14.8 87 181-271 13-99 (116)
16 2lkz_A RNA-binding protein 5; 99.6 4.7E-16 1.6E-20 143.0 8.7 80 185-267 9-94 (95)
17 3bs9_A Nucleolysin TIA-1 isofo 99.6 9.2E-16 3.1E-20 136.9 10.4 82 184-268 5-86 (87)
18 2cpz_A CUG triplet repeat RNA- 99.6 2.4E-15 8.1E-20 141.9 13.7 86 181-269 21-106 (115)
19 3mdf_A Peptidyl-prolyl CIS-tra 99.6 9.5E-16 3.2E-20 136.3 10.3 81 183-266 5-85 (85)
20 2dt6_A Splicing factor 3 subun 99.6 3.6E-17 1.2E-21 139.4 0.9 60 331-391 2-61 (64)
21 1whw_A Hypothetical protein ri 99.6 2E-15 6.8E-20 138.4 12.4 84 183-269 6-89 (99)
22 4f25_A Polyadenylate-binding p 99.6 8.9E-16 3E-20 145.4 10.2 79 185-268 5-83 (115)
23 2dgs_A DAZ-associated protein 99.6 2.2E-15 7.7E-20 138.1 12.6 82 183-268 8-89 (99)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2E-15 6.7E-20 139.2 12.2 84 183-269 10-93 (102)
25 2khc_A Testis-specific RNP-typ 99.6 3.7E-15 1.3E-19 141.1 14.2 84 180-266 35-118 (118)
26 2cq0_A Eukaryotic translation 99.6 2.9E-15 9.9E-20 138.4 13.1 84 182-268 12-95 (103)
27 2cqc_A Arginine/serine-rich sp 99.6 2.2E-15 7.7E-20 136.6 12.1 83 182-267 12-94 (95)
28 2dnz_A Probable RNA-binding pr 99.6 2.3E-15 7.8E-20 136.8 11.8 82 184-268 4-85 (95)
29 2cpf_A RNA binding motif prote 99.6 1.9E-15 6.4E-20 138.3 11.2 87 183-269 3-89 (98)
30 2dnm_A SRP46 splicing factor; 99.6 1.7E-15 5.9E-20 139.9 10.8 83 183-268 11-93 (103)
31 2do4_A Squamous cell carcinoma 99.6 2.9E-15 9.9E-20 137.6 12.0 83 182-268 14-96 (100)
32 2dgp_A Bruno-like 4, RNA bindi 99.6 1.8E-15 6.3E-20 140.3 10.3 85 181-268 9-96 (106)
33 1x5t_A Splicing factor 3B subu 99.6 3E-15 1E-19 136.2 11.4 82 184-268 4-86 (96)
34 2x1f_A MRNA 3'-END-processing 99.6 2.7E-15 9.4E-20 136.9 11.1 82 185-269 2-83 (96)
35 2la6_A RNA-binding protein FUS 99.6 1.9E-15 6.5E-20 138.8 10.1 81 183-266 11-99 (99)
36 2do0_A HnRNP M, heterogeneous 99.6 9.6E-15 3.3E-19 137.3 15.0 82 183-268 13-94 (114)
37 1p27_B RNA-binding protein 8A; 99.6 1.7E-15 5.9E-20 140.5 9.5 84 183-269 21-104 (106)
38 2fy1_A RNA-binding motif prote 99.6 3.2E-15 1.1E-19 142.0 11.6 82 184-269 6-87 (116)
39 2cq3_A RNA-binding protein 9; 99.6 1.1E-14 3.8E-19 134.5 14.8 83 182-269 12-94 (103)
40 3p5t_L Cleavage and polyadenyl 99.6 3.7E-16 1.3E-20 141.2 4.8 80 186-268 2-83 (90)
41 1x4h_A RNA-binding protein 28; 99.6 5.9E-15 2E-19 137.9 13.1 83 183-268 13-101 (111)
42 2cph_A RNA binding motif prote 99.6 4.2E-15 1.4E-19 138.0 11.9 84 182-268 12-97 (107)
43 2div_A TRNA selenocysteine ass 99.6 1.8E-15 6.1E-20 138.7 9.2 83 184-269 8-95 (99)
44 1x5u_A Splicing factor 3B subu 99.6 4.1E-15 1.4E-19 137.7 11.5 83 183-268 13-95 (105)
45 1x5s_A Cold-inducible RNA-bind 99.6 3.2E-15 1.1E-19 137.7 10.6 84 183-269 10-93 (102)
46 1oo0_B CG8781-PA, drosophila Y 99.6 4E-15 1.4E-19 139.1 11.3 83 183-268 24-106 (110)
47 2cpe_A RNA-binding protein EWS 99.6 5.8E-15 2E-19 138.7 12.4 84 182-268 12-103 (113)
48 2jrs_A RNA-binding protein 39; 99.6 3.8E-15 1.3E-19 139.7 10.9 85 181-268 22-106 (108)
49 2d9p_A Polyadenylate-binding p 99.6 5.6E-15 1.9E-19 136.5 11.8 83 182-269 12-94 (103)
50 3ns6_A Eukaryotic translation 99.6 7.8E-16 2.7E-20 142.2 5.9 81 184-267 5-92 (100)
51 2dgx_A KIAA0430 protein; RRM d 99.6 5.6E-15 1.9E-19 135.2 11.5 80 184-269 8-91 (96)
52 2ywk_A Putative RNA-binding pr 99.6 3.9E-15 1.3E-19 135.2 10.3 82 182-267 13-94 (95)
53 2dnh_A Bruno-like 5, RNA bindi 99.6 6E-15 2E-19 136.6 11.6 84 182-269 12-98 (105)
54 4a8x_A RNA-binding protein wit 99.6 4.2E-15 1.4E-19 132.8 10.2 82 184-268 3-85 (88)
55 2cqp_A RNA-binding protein 12; 99.6 3.7E-15 1.3E-19 136.3 10.0 83 182-267 12-94 (98)
56 1sjq_A Polypyrimidine tract-bi 99.6 3.1E-15 1.1E-19 140.0 9.6 79 183-270 14-94 (105)
57 2dng_A Eukaryotic translation 99.6 1.2E-14 4.2E-19 134.3 13.3 81 183-268 13-93 (103)
58 2dgt_A RNA-binding protein 30; 99.6 1.4E-14 4.7E-19 131.2 13.3 76 182-268 7-82 (92)
59 3d9j_A RNA-binding protein 16; 99.6 1.2E-15 4.2E-20 150.9 6.7 129 447-586 3-137 (145)
60 2dhg_A TRNA selenocysteine ass 99.6 3.6E-15 1.2E-19 137.9 9.3 82 184-269 8-91 (104)
61 2kt5_A RNA and export factor-b 99.6 1.2E-14 4.2E-19 139.0 13.3 83 183-269 33-115 (124)
62 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.9E-14 6.6E-19 132.9 13.9 82 182-268 12-93 (103)
63 3ulh_A THO complex subunit 4; 99.6 7.8E-15 2.7E-19 136.3 11.3 80 183-266 27-106 (107)
64 1u6f_A Tcubp1, RNA-binding pro 99.6 9E-15 3.1E-19 142.4 12.2 84 182-268 39-122 (139)
65 2err_A Ataxin-2-binding protei 99.6 8E-15 2.7E-19 137.5 11.2 83 181-268 25-107 (109)
66 3s7r_A Heterogeneous nuclear r 99.6 9.5E-15 3.2E-19 130.6 11.1 79 183-265 9-87 (87)
67 2dh8_A DAZ-associated protein 99.6 7E-15 2.4E-19 136.3 10.6 84 182-269 13-96 (105)
68 1wi8_A EIF-4B, eukaryotic tran 99.6 2E-14 6.9E-19 133.1 13.5 81 183-268 13-94 (104)
69 2dgv_A HnRNP M, heterogeneous 99.6 5.7E-15 1.9E-19 133.3 9.5 82 183-269 6-87 (92)
70 2cpi_A CCR4-NOT transcription 99.6 8.8E-15 3E-19 137.6 11.2 86 184-269 14-102 (111)
71 2ytc_A PRE-mRNA-splicing facto 99.6 9.9E-15 3.4E-19 129.8 10.8 76 182-266 9-85 (85)
72 3r27_A HnRNP L, heterogeneous 99.6 8.9E-15 3E-19 135.7 10.8 79 183-270 19-99 (100)
73 1x4a_A Splicing factor, argini 99.6 2.3E-14 8E-19 133.8 13.7 81 182-268 19-99 (109)
74 3ex7_B RNA-binding protein 8A; 99.6 6.3E-15 2.1E-19 141.1 9.8 85 182-269 19-103 (126)
75 2cq4_A RNA binding motif prote 99.6 8.8E-15 3E-19 137.8 10.3 82 183-268 23-104 (114)
76 2cqg_A TDP-43, TAR DNA-binding 99.6 2.8E-14 9.7E-19 131.7 13.5 83 182-269 12-94 (103)
77 1x4e_A RNA binding motif, sing 99.6 1.8E-15 6.2E-20 134.7 5.2 80 184-266 4-83 (85)
78 3ucg_A Polyadenylate-binding p 99.6 8.6E-15 2.9E-19 131.2 9.6 80 184-267 5-84 (89)
79 2dgw_A Probable RNA-binding pr 99.6 2.1E-14 7.3E-19 129.5 12.3 80 183-268 8-87 (91)
80 2m2b_A RNA-binding protein 10; 99.6 6E-15 2.1E-19 142.8 9.2 85 180-268 18-108 (131)
81 2cq1_A PTB-like protein L; RRM 99.6 4E-14 1.4E-18 131.6 14.1 79 183-270 13-93 (101)
82 1wex_A Hypothetical protein (r 99.6 1.8E-14 6.3E-19 134.6 11.9 79 183-270 13-93 (104)
83 3n9u_C Cleavage and polyadenyl 99.5 8.2E-15 2.8E-19 146.7 9.7 82 184-268 54-137 (156)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.4E-14 8.2E-19 139.0 12.8 82 181-265 59-140 (140)
85 2a3j_A U1 small nuclear ribonu 99.5 8E-15 2.7E-19 141.9 9.2 80 183-268 27-110 (127)
86 2ek1_A RNA-binding protein 12; 99.5 5.9E-15 2E-19 134.0 7.7 82 183-267 13-94 (95)
87 1s79_A Lupus LA protein; RRM, 99.5 5.6E-15 1.9E-19 137.7 7.6 80 183-267 9-88 (103)
88 2kxn_B Transformer-2 protein h 99.5 9.2E-15 3.1E-19 141.6 9.4 84 182-268 43-126 (129)
89 1p1t_A Cleavage stimulation fa 99.5 3.2E-15 1.1E-19 138.1 5.8 83 183-268 6-88 (104)
90 2wbr_A GW182, gawky, LD47780P; 99.5 1.4E-14 4.7E-19 130.7 9.7 74 184-266 6-79 (89)
91 2kn4_A Immunoglobulin G-bindin 99.5 2E-14 6.9E-19 142.8 11.8 84 182-268 67-150 (158)
92 2ki2_A SS-DNA binding protein 99.5 1.8E-15 6.1E-20 136.2 3.6 80 186-269 2-81 (90)
93 2dis_A Unnamed protein product 99.5 1.5E-14 5.1E-19 134.9 9.9 86 184-271 7-95 (109)
94 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.6E-14 8.7E-19 142.2 12.3 83 183-268 37-119 (156)
95 2dgu_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 130.5 13.1 76 183-269 9-84 (103)
96 2fc9_A NCL protein; structure 99.5 4.6E-14 1.6E-18 129.8 12.9 81 182-269 12-92 (101)
97 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6E-19 134.3 10.1 76 184-268 14-92 (102)
98 2rs2_A Musashi-1, RNA-binding 99.5 2.6E-14 9E-19 134.1 11.4 83 182-268 22-104 (109)
99 1x4g_A Nucleolysin TIAR; struc 99.5 3.2E-14 1.1E-18 133.0 11.5 79 182-269 22-100 (109)
100 1whx_A Hypothetical protein ri 99.5 1.2E-14 4.1E-19 137.0 8.6 78 183-269 8-85 (111)
101 2la4_A Nuclear and cytoplasmic 99.5 1.6E-14 5.6E-19 132.8 9.4 76 183-267 25-100 (101)
102 1nu4_A U1A RNA binding domain; 99.5 1.4E-14 4.7E-19 132.1 8.5 80 183-268 6-89 (97)
103 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.4E-14 8.1E-19 144.1 11.0 83 183-268 70-152 (165)
104 2dnq_A RNA-binding protein 4B; 99.5 3.5E-14 1.2E-18 128.0 11.0 76 183-269 6-81 (90)
105 2nlw_A Eukaryotic translation 99.5 1.7E-14 5.9E-19 134.2 9.1 80 184-268 14-100 (105)
106 2mss_A Protein (musashi1); RNA 99.5 6.8E-15 2.3E-19 127.9 5.9 75 187-265 1-75 (75)
107 2ad9_A Polypyrimidine tract-bi 99.5 3E-14 1E-18 136.4 10.9 80 183-271 29-110 (119)
108 1x5o_A RNA binding motif, sing 99.5 5.1E-14 1.7E-18 132.4 12.2 82 182-267 22-111 (114)
109 2dnp_A RNA-binding protein 14; 99.5 3.9E-14 1.3E-18 127.7 10.8 75 183-268 7-81 (90)
110 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8.4E-15 2.9E-19 135.0 6.4 81 183-268 17-98 (100)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.1E-15 2.8E-19 127.7 5.8 76 186-265 1-76 (77)
112 1why_A Hypothetical protein ri 99.5 4.4E-14 1.5E-18 129.1 11.0 77 183-268 15-93 (97)
113 2jvo_A Nucleolar protein 3; nu 99.5 3.7E-14 1.3E-18 133.0 10.7 79 179-268 25-103 (108)
114 1x4b_A Heterogeneous nuclear r 99.5 5.1E-14 1.7E-18 132.9 11.7 82 183-268 25-106 (116)
115 2cpj_A Non-POU domain-containi 99.5 6.1E-14 2.1E-18 128.7 11.8 77 183-268 13-89 (99)
116 2lea_A Serine/arginine-rich sp 99.5 1E-14 3.5E-19 142.3 7.0 85 182-269 44-128 (135)
117 2cpy_A RNA-binding protein 12; 99.5 4E-14 1.4E-18 133.7 10.8 81 183-268 13-94 (114)
118 1x4f_A Matrin 3; structural ge 99.5 3.4E-14 1.2E-18 134.5 10.3 78 182-268 22-102 (112)
119 2jwn_A Embryonic polyadenylate 99.5 2.6E-14 8.9E-19 136.4 9.6 81 184-268 35-115 (124)
120 2jvr_A Nucleolar protein 3; RN 99.5 2.5E-14 8.7E-19 135.2 9.2 77 184-267 27-104 (111)
121 2xnq_A Nuclear polyadenylated 99.5 6.9E-14 2.4E-18 128.5 11.4 76 182-268 19-95 (97)
122 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.5E-18 125.8 13.8 76 183-269 13-90 (99)
123 2e5j_A Methenyltetrahydrofolat 99.5 3.1E-14 1.1E-18 130.2 8.9 78 183-268 17-94 (97)
124 1x4c_A Splicing factor, argini 99.5 1.9E-13 6.7E-18 127.6 14.5 75 184-268 14-93 (108)
125 3lqv_A PRE-mRNA branch site pr 99.5 4.7E-14 1.6E-18 132.9 9.4 79 184-268 7-85 (115)
126 2cqh_A IGF-II mRNA-binding pro 99.5 5.2E-14 1.8E-18 127.5 9.3 75 184-268 7-83 (93)
127 1wg5_A Heterogeneous nuclear r 99.5 9.9E-14 3.4E-18 128.8 11.3 81 183-268 13-94 (104)
128 2fc8_A NCL protein; structure 99.5 1.5E-13 5.1E-18 126.5 12.2 81 182-268 12-92 (102)
129 2kvi_A Nuclear polyadenylated 99.5 4.1E-14 1.4E-18 129.4 8.1 77 183-270 8-85 (96)
130 2krb_A Eukaryotic translation 99.5 1.9E-14 6.3E-19 127.4 5.6 72 186-262 2-80 (81)
131 2db1_A Heterogeneous nuclear r 99.5 7E-14 2.4E-18 133.1 9.9 81 183-268 15-98 (118)
132 1wel_A RNA-binding protein 12; 99.5 2.6E-14 9E-19 136.9 6.8 82 183-268 23-104 (124)
133 2xs2_A Deleted in azoospermia- 99.5 2.9E-14 9.8E-19 131.5 6.7 81 182-268 6-86 (102)
134 1x5p_A Negative elongation fac 99.5 4.3E-13 1.5E-17 122.6 14.2 74 184-268 14-87 (97)
135 2hvz_A Splicing factor, argini 99.5 5.9E-14 2E-18 129.1 8.1 76 186-269 1-76 (101)
136 2cpx_A Hypothetical protein FL 99.5 8.8E-14 3E-18 130.8 9.2 79 183-268 23-105 (115)
137 3q2s_C Cleavage and polyadenyl 99.5 4.2E-14 1.4E-18 150.2 7.4 82 184-268 67-150 (229)
138 2cq2_A Hypothetical protein LO 99.5 9E-14 3.1E-18 131.9 8.8 77 184-269 24-107 (114)
139 1fj7_A Nucleolin RBD1, protein 99.5 1.9E-14 6.5E-19 132.4 3.9 80 184-268 16-95 (101)
140 3egn_A RNA-binding protein 40; 99.5 3E-14 1E-18 139.6 5.6 85 184-268 44-130 (143)
141 1wez_A HnRNP H', FTP-3, hetero 99.5 1.5E-13 5.2E-18 127.5 9.7 80 183-268 13-92 (102)
142 3pgw_S U1-70K; protein-RNA com 99.5 5.8E-13 2E-17 154.2 16.7 83 184-269 101-183 (437)
143 1wf1_A RNA-binding protein RAL 99.5 2.8E-13 9.5E-18 126.8 11.4 76 182-268 24-100 (110)
144 1fjc_A Nucleolin RBD2, protein 99.5 1.5E-13 5E-18 125.2 9.1 79 182-268 13-91 (96)
145 2f3j_A RNA and export factor b 99.5 1E-13 3.5E-18 141.5 9.1 83 183-269 86-168 (177)
146 2hgl_A HNRPF protein, heteroge 99.4 1E-13 3.5E-18 135.7 8.5 81 182-267 41-124 (136)
147 1wg1_A KIAA1579 protein, homol 99.4 3.3E-13 1.1E-17 121.3 11.1 75 184-268 4-78 (88)
148 2lcw_A RNA-binding protein FUS 99.2 7.2E-15 2.5E-19 138.9 0.0 84 182-268 4-95 (116)
149 2e5g_A U6 snRNA-specific termi 99.4 3.2E-13 1.1E-17 122.7 10.8 76 184-268 7-82 (94)
150 3md3_A Nuclear and cytoplasmic 99.4 4.1E-13 1.4E-17 132.4 12.4 81 183-266 85-165 (166)
151 2qfj_A FBP-interacting repress 99.4 2E-13 6.8E-18 141.1 10.5 83 184-269 124-206 (216)
152 1iqt_A AUF1, heterogeneous nuc 99.4 3.5E-14 1.2E-18 123.2 4.0 75 187-265 1-75 (75)
153 2lmi_A GRSF-1, G-rich sequence 99.4 6.7E-14 2.3E-18 130.7 6.0 80 183-267 9-91 (107)
154 4f02_A Polyadenylate-binding p 99.4 2.4E-13 8.3E-18 141.9 10.8 80 184-266 14-93 (213)
155 2dnn_A RNA-binding protein 12; 99.4 3.4E-13 1.1E-17 127.1 10.6 77 184-266 15-91 (109)
156 2i2y_A Fusion protein consists 99.4 2.2E-13 7.7E-18 134.5 9.0 79 182-268 70-148 (150)
157 2e44_A Insulin-like growth fac 99.4 3.2E-13 1.1E-17 122.9 8.8 78 184-268 14-92 (96)
158 1fxl_A Paraneoplastic encephal 99.4 5.2E-13 1.8E-17 131.8 11.0 80 185-267 2-81 (167)
159 1b7f_A Protein (SXL-lethal pro 99.4 4.7E-13 1.6E-17 132.7 10.0 80 185-267 3-82 (168)
160 3d2w_A TAR DNA-binding protein 99.4 7.4E-13 2.5E-17 119.8 10.3 75 182-268 8-84 (89)
161 3zzy_A Polypyrimidine tract-bi 99.4 8E-13 2.7E-17 128.2 11.0 77 185-269 28-107 (130)
162 3tyt_A Heterogeneous nuclear r 99.4 9.4E-13 3.2E-17 137.3 11.6 79 184-270 3-82 (205)
163 2e5i_A Heterogeneous nuclear r 99.4 1.5E-12 5.1E-17 125.5 12.0 75 186-269 26-103 (124)
164 1sjr_A Polypyrimidine tract-bi 99.4 6.6E-13 2.2E-17 133.5 9.2 78 185-269 46-125 (164)
165 2j8a_A Histone-lysine N-methyl 99.4 5.3E-13 1.8E-17 128.3 7.9 77 186-265 3-93 (136)
166 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4E-17 130.5 10.5 79 184-265 93-171 (172)
167 1l3k_A Heterogeneous nuclear r 99.4 1.2E-12 4E-17 133.3 10.7 82 183-268 11-92 (196)
168 3pgw_A U1-A; protein-RNA compl 99.4 8.1E-12 2.8E-16 135.1 17.9 82 182-269 6-91 (282)
169 2diu_A KIAA0430 protein; struc 99.4 9.4E-13 3.2E-17 120.0 8.3 72 184-268 8-84 (96)
170 2bz2_A Negative elongation fac 99.4 1.2E-12 4E-17 125.4 9.3 76 183-269 37-112 (121)
171 3u1l_A PRE-mRNA-splicing facto 99.4 5.9E-13 2E-17 141.9 7.9 81 182-271 131-232 (240)
172 4f02_A Polyadenylate-binding p 99.4 1.4E-12 4.8E-17 136.1 10.3 78 185-267 103-180 (213)
173 2dnl_A Cytoplasmic polyadenyla 99.4 1.5E-12 5.1E-17 122.9 9.5 80 184-266 7-86 (114)
174 2yh0_A Splicing factor U2AF 65 99.4 2.3E-12 7.7E-17 131.4 11.3 83 183-268 112-194 (198)
175 2hzc_A Splicing factor U2AF 65 99.3 1.7E-12 5.9E-17 115.6 9.0 71 184-264 5-86 (87)
176 2cjk_A Nuclear polyadenylated 99.3 8.6E-13 2.9E-17 130.8 7.3 81 184-268 86-166 (167)
177 2hgn_A Heterogeneous nuclear r 99.3 3.7E-13 1.3E-17 132.3 4.2 79 184-268 45-123 (139)
178 1wf0_A TDP-43, TAR DNA-binding 99.3 2E-12 6.8E-17 115.9 8.6 75 184-268 4-78 (88)
179 2hgm_A HNRPF protein, heteroge 99.3 1.4E-12 4.7E-17 126.0 7.9 79 183-267 40-120 (126)
180 3md3_A Nuclear and cytoplasmic 99.3 3.4E-12 1.2E-16 125.8 10.9 79 186-268 1-79 (166)
181 3beg_B Splicing factor, argini 99.3 1.7E-12 5.8E-17 122.9 8.0 73 184-266 15-92 (115)
182 2dha_A FLJ20171 protein; RRM d 99.3 1.2E-12 4E-17 126.1 6.3 79 184-267 22-104 (123)
183 1l3k_A Heterogeneous nuclear r 99.3 3.8E-12 1.3E-16 129.5 10.5 82 183-268 102-183 (196)
184 1b7f_A Protein (SXL-lethal pro 99.3 3.7E-12 1.3E-16 126.1 10.1 80 183-265 87-168 (168)
185 2qfj_A FBP-interacting repress 99.3 3.3E-12 1.1E-16 132.0 9.1 81 184-267 27-107 (216)
186 1fxl_A Paraneoplastic encephal 99.3 4.8E-12 1.6E-16 124.8 8.7 79 184-265 87-167 (167)
187 2cjk_A Nuclear polyadenylated 99.3 5.4E-12 1.8E-16 125.0 9.0 78 184-266 2-79 (167)
188 1fje_B Nucleolin RBD12, protei 99.3 1.3E-11 4.4E-16 123.6 11.3 78 183-268 97-174 (175)
189 3nmr_A Cugbp ELAV-like family 99.3 6.5E-12 2.2E-16 125.1 9.0 79 183-265 93-174 (175)
190 3nmr_A Cugbp ELAV-like family 99.3 6.9E-12 2.3E-16 124.9 9.0 81 184-267 2-87 (175)
191 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-11 4.2E-16 127.8 10.3 80 184-268 108-187 (193)
192 2pe8_A Splicing factor 45; RRM 99.2 2.2E-11 7.6E-16 113.8 10.6 82 184-267 7-93 (105)
193 3pgw_A U1-A; protein-RNA compl 99.2 1.9E-11 6.5E-16 132.2 11.6 78 181-266 203-281 (282)
194 2ghp_A U4/U6 snRNA-associated 99.2 1.6E-11 5.5E-16 133.5 10.0 82 183-268 208-291 (292)
195 3smz_A Protein raver-1, ribonu 99.2 3.4E-11 1.2E-15 130.3 11.6 82 184-268 94-175 (284)
196 3sde_A Paraspeckle component 1 99.2 3.7E-11 1.3E-15 129.3 11.2 75 183-266 20-94 (261)
197 2adc_A Polypyrimidine tract-bi 99.2 1.6E-11 5.3E-16 129.6 8.0 78 183-268 32-110 (229)
198 1qm9_A Polypyrimidine tract-bi 99.2 9.5E-11 3.2E-15 119.9 13.2 77 185-269 3-80 (198)
199 3smz_A Protein raver-1, ribonu 99.2 4.1E-11 1.4E-15 129.7 11.0 82 183-268 182-264 (284)
200 1fje_B Nucleolin RBD12, protei 99.2 7.1E-12 2.4E-16 125.5 4.5 81 183-268 11-91 (175)
201 1qm9_A Polypyrimidine tract-bi 99.2 2.8E-11 9.7E-16 123.8 8.9 78 182-267 117-196 (198)
202 2adc_A Polypyrimidine tract-bi 99.2 4.3E-11 1.5E-15 126.2 9.5 78 182-267 148-227 (229)
203 2dit_A HIV TAT specific factor 99.2 1.5E-10 5.2E-15 108.8 12.3 78 184-268 14-102 (112)
204 2g4b_A Splicing factor U2AF 65 99.1 9.1E-11 3.1E-15 116.7 10.1 74 184-267 3-87 (172)
205 3tyt_A Heterogeneous nuclear r 99.1 4.7E-11 1.6E-15 124.5 7.9 78 183-265 121-204 (205)
206 2dt7_B Splicing factor 3 subun 99.1 8.3E-12 2.8E-16 111.8 1.2 56 329-385 28-83 (85)
207 3v4m_A Splicing factor U2AF 65 99.1 1.8E-10 6.2E-15 107.6 9.9 82 184-266 4-95 (105)
208 2yh0_A Splicing factor U2AF 65 99.1 1.8E-10 6.1E-15 117.2 10.7 75 184-268 3-88 (198)
209 1jmt_A Splicing factor U2AF 35 99.1 4.1E-11 1.4E-15 111.7 5.0 73 189-265 19-103 (104)
210 3tht_A Alkylated DNA repair pr 99.1 9.2E-11 3.2E-15 131.3 8.0 78 183-269 16-100 (345)
211 2ghp_A U4/U6 snRNA-associated 99.1 1.8E-10 6.2E-15 125.1 9.3 80 185-268 117-197 (292)
212 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.6E-10 2.6E-14 102.6 11.7 64 195-268 27-90 (100)
213 3sde_A Paraspeckle component 1 99.1 2.1E-10 7.2E-15 123.4 9.2 80 185-268 96-179 (261)
214 3ue2_A Poly(U)-binding-splicin 99.0 8.3E-10 2.8E-14 105.4 9.3 83 184-266 19-107 (118)
215 2e62_A Protein AT5G25060; CWF2 98.8 7.8E-09 2.7E-13 85.2 7.8 56 815-870 6-61 (61)
216 3clj_A Protein NRD1; CTD-inter 98.8 8.9E-10 3.1E-14 109.4 2.0 128 448-585 3-146 (157)
217 3s6e_A RNA-binding protein 39; 98.8 2.8E-08 9.7E-13 94.2 11.0 75 185-266 7-91 (114)
218 2dnr_A Synaptojanin-1; RRM dom 98.6 8.4E-08 2.9E-12 86.8 8.3 73 184-268 6-86 (91)
219 1owx_A Lupus LA protein, SS-B, 98.6 1.5E-07 5E-12 90.1 8.7 73 183-264 16-92 (121)
220 1x4p_A Putative splicing facto 98.5 8.4E-09 2.9E-13 85.5 -2.3 56 329-386 4-59 (66)
221 1ufw_A Synaptojanin 2; RNP dom 98.3 6.9E-07 2.4E-11 81.2 5.9 70 183-264 13-91 (95)
222 3dxb_A Thioredoxin N-terminall 98.2 1.2E-06 4E-11 91.7 6.4 68 198-265 142-210 (222)
223 4dgw_B PRE-mRNA-splicing facto 97.9 1.6E-06 5.4E-11 85.5 0.9 52 331-385 6-57 (152)
224 1wey_A Calcipressin 1; structu 97.6 0.00022 7.7E-09 65.9 9.9 76 185-269 5-85 (104)
225 2l9w_A U4/U6 snRNA-associated- 97.6 0.00017 5.8E-09 67.0 8.7 71 185-264 21-96 (117)
226 1whv_A Poly(A)-specific ribonu 95.1 0.043 1.5E-06 50.1 7.0 57 184-251 14-70 (100)
227 2dhx_A Poly (ADP-ribose) polym 94.8 0.1 3.6E-06 48.0 8.6 68 184-263 7-79 (104)
228 1wwh_A Nucleoporin 35, nucleop 94.4 0.14 4.7E-06 48.5 8.8 70 184-264 23-93 (119)
229 1uw4_A UPF3X; nonsense mediate 94.1 0.35 1.2E-05 43.7 10.3 69 186-256 2-71 (91)
230 3ctr_A Poly(A)-specific ribonu 91.9 0.19 6.4E-06 46.0 5.3 54 187-251 7-60 (101)
231 1h1j_S THO1 protein; SAP domai 91.8 0.16 5.5E-06 41.0 4.2 40 636-675 4-43 (51)
232 2do1_A Nuclear protein HCC-1; 88.5 0.39 1.3E-05 39.3 3.9 37 636-672 9-45 (55)
233 1zrj_A E1B-55KDA-associated pr 88.4 0.49 1.7E-05 38.0 4.3 36 635-670 8-43 (50)
234 2kvu_A MKL/myocardin-like prot 88.1 0.44 1.5E-05 41.3 4.2 40 634-673 23-62 (75)
235 3p3d_A Nucleoporin 53; structu 85.3 1.9 6.5E-05 41.4 7.3 79 185-265 7-96 (132)
236 2i2y_A Fusion protein consists 85.2 0.26 8.8E-06 47.7 1.3 39 228-267 11-50 (150)
237 2kn4_A Immunoglobulin G-bindin 84.5 0.57 2E-05 45.4 3.5 36 214-254 2-37 (158)
238 2l08_A Regulator of nonsense t 83.0 3 0.0001 38.0 7.2 70 185-256 9-79 (97)
239 3pq1_A Poly(A) RNA polymerase; 82.6 0.61 2.1E-05 54.0 3.2 53 186-247 54-106 (464)
240 2rnn_A E3 SUMO-protein ligase 72.0 3.9 0.00013 38.2 4.7 39 632-670 32-70 (114)
241 3d45_A Poly(A)-specific ribonu 60.4 15 0.00053 42.8 7.9 55 185-251 440-494 (507)
242 1jjr_A KU70, thyroid autoantig 54.5 8.8 0.0003 37.7 3.7 37 634-670 58-94 (151)
243 4f25_A Polyadenylate-binding p 34.3 8.4 0.00029 35.2 0.0 19 183-201 95-113 (115)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.92 E-value=9.2e-26 Score=222.83 Aligned_cols=130 Identities=17% Similarity=0.302 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHHH
Q 002060 448 RDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 527 (973)
Q Consensus 448 r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~~ 527 (973)
.+.|+.+|+.|+.|+++|+.||.|||+|..+|.+||++|.++|....++..+||++|||+|||||||. +++++.|+.+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk--~k~~~~f~~~ 82 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK--GQKIIQFQDS 82 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG--GGTCCHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh--hcCchHHHHH
Confidence 47899999999999999999999999999999999999999999887788999999999999999995 5577889999
Q ss_pred HHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccC
Q 002060 528 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 587 (973)
Q Consensus 528 fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~ 587 (973)
|+++||.+|.++.. .. .+..+++|++||++|++|.||++++|..|++.|.+.
T Consensus 83 F~~~L~~~~~~~~~---~~-----~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~ 134 (142)
T 2km4_A 83 FGKVAAEVLGRINQ---EF-----PRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA 134 (142)
T ss_dssp HHHTHHHHHHHHHH---HS-----CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cC-----CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence 99999999976643 22 478899999999999999999999999999999753
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.90 E-value=6.1e-25 Score=214.97 Aligned_cols=128 Identities=20% Similarity=0.380 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhHH
Q 002060 447 QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 526 (973)
Q Consensus 447 ~r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR~ 526 (973)
..+.|+.+|+.||+++++|+++|.|||+|..+|.+||++|.++|.... .++||++|||||||||||. ++++.|+.
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~--~~~KL~~LYLindIl~ns~---~~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAK--SNRKLTFLYLANDVIQNSK---RKGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHT---TTCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHH---hcCHHHHH
Confidence 457899999999999999999999999999999999999999997654 5799999999999999994 34678999
Q ss_pred HHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccC
Q 002060 527 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 587 (973)
Q Consensus 527 ~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~ 587 (973)
.|+..||.+|.++... ..+.++++|.+||++|++|.|||+++|.+|+..|.+.
T Consensus 80 ~f~~~l~~~~~~~~~~--------~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~ 132 (135)
T 4fu3_A 80 EFESVLVDAFSHVARE--------ADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDS 132 (135)
T ss_dssp HHHTTHHHHHHHHHHH--------HHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCC
Confidence 9999999999876532 2356789999999999999999999999999998653
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.1e-24 Score=209.27 Aligned_cols=125 Identities=18% Similarity=0.375 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhhH
Q 002060 446 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR 525 (973)
Q Consensus 446 ~~r~~le~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~yR 525 (973)
...+.|+.+|+.|++++++|+++|.|||+|..+|.+||++|.+.|.. ++.++||++|||||||||||. .++++.|+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~--~~~~~KL~~LYL~ndIl~ns~--~~~~~~f~ 80 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRR--SAYPHRLNLFYLANDVIQNCK--RKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTT--TTTCTHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHhc--ccChHHHH
Confidence 45578999999999999999999999999999999999999999864 467899999999999999995 67889999
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 002060 526 TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (973)
Q Consensus 526 ~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (973)
..|+++||.+|.++ ..++++++|.+||++|++|.|||+++|..|++.+.
T Consensus 81 ~~f~~~l~~~~~~~-----------~~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~ 129 (132)
T 4flb_A 81 ESFADVLPEAAALV-----------KDPSVSKSVERIFKIWEDRNVYPEEMIVALREALS 129 (132)
T ss_dssp HHHHTTHHHHHHTT-----------CSTTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHh
Confidence 99999999999654 23578999999999999999999999999999875
No 4
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.79 E-value=7.9e-21 Score=168.13 Aligned_cols=72 Identities=29% Similarity=0.527 Sum_probs=67.7
Q ss_pred CcccccCCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeeccCCcc
Q 002060 320 PDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (973)
Q Consensus 320 ~~v~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (973)
+++.|.||.|++++.+|++||.||+++|++||++||+++++||+|+||++..+++|.||+|+|+++.+|+..
T Consensus 5 ~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g~~~ 76 (78)
T 1x4o_A 5 SSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKSGPS 76 (78)
T ss_dssp CCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhcCCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999998753
No 5
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.77 E-value=2.7e-20 Score=168.21 Aligned_cols=71 Identities=35% Similarity=0.604 Sum_probs=67.3
Q ss_pred cccccCCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeeccCCcc
Q 002060 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (973)
Q Consensus 321 ~v~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (973)
.|.|.||.|+.++.+|++||.||++||++||++||+++++||+|+||++..+++|.||+|+|+++.+|++.
T Consensus 16 ~v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~~ 86 (88)
T 1ug0_A 16 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPS 86 (88)
T ss_dssp TSCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCCS
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCCC
Confidence 47788999999999999999999999999999999999999999999987999999999999999998764
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=155.22 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=77.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.++|+|||+|||+.+|+++|+.+|++||.|.+|+|+. +..+|+++|||||.|.+.++|+.|+..|||..|+|++|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3478999999999999999999999999999999994 6678999999999999999999999999999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.||+|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99975
No 7
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.72 E-value=6.5e-18 Score=166.90 Aligned_cols=126 Identities=15% Similarity=0.300 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhcc-cCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCCCchhh
Q 002060 446 SQRDEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAY 524 (973)
Q Consensus 446 ~~r~~le~lL~~Lt-~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~na~~y 524 (973)
...+.|...|..|+ +++..|+.++.||++|..+|..||++|.+.|.. ++..+||..||||+||++||.. .|
T Consensus 7 ~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k--~~p~~KL~~LYL~DsIvkN~g~------~y 78 (144)
T 1sz9_A 7 VIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK--CMPKQKLYAFYALDSICKNVGS------PY 78 (144)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTCT------TH
T ss_pred HHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHhhHHHHHHHHHHHHHhccc------hH
Confidence 45678999999998 999999999999999999999999999999964 5689999999999999999852 49
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccC-----ccCcHHHHHHHHHHhccC
Q 002060 525 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDW-----FLFSDAYVNGLRATFLRS 587 (973)
Q Consensus 525 R~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~-----~vfp~~~l~~L~~~fl~~ 587 (973)
...|+..|+.+|.+ +|..+ .+..|.+|.+||++|++| .|||+++|..|++.+...
T Consensus 79 ~~~F~~~l~~~f~~---~~~~~-----d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a 138 (144)
T 1sz9_A 79 TIYFSRNLFNLYKR---TYLLV-----DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKA 138 (144)
T ss_dssp HHHHHTTHHHHHHH---HHHTS-----CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---HHHhC-----CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999976 44433 478999999999999999 999999999999988643
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=147.84 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
++.++|||+|||+.+++++|.++|++||.|.+|+|+. +..||+++|||||+|.+.++|+.|+..|||..|+|+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~---d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILL---HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4578999999999999999999999999999999994 6778999999999999999999999999999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.|+..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 99853
No 9
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=139.55 Aligned_cols=82 Identities=22% Similarity=0.489 Sum_probs=76.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+++++|..+|++||.|..|+|+. +..++.++|||||.|.+.++|+.|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMK---DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECC---CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 45678999999999999999999999999999999984 566788999999999999999999999999999999999
Q ss_pred EEeec
Q 002060 262 IGWGK 266 (973)
Q Consensus 262 V~~ak 266 (973)
|.||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=1.3e-15 Score=143.68 Aligned_cols=86 Identities=22% Similarity=0.491 Sum_probs=79.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|+.+|++||.|..|+|+. +..+|.++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44579999999999999999999999999999999994 556888999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 002060 262 IGWGKSVAL 270 (973)
Q Consensus 262 V~~ak~~~~ 270 (973)
|.|++....
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987643
No 11
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-17 Score=153.16 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=62.9
Q ss_pred ccccCCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeeccCCc
Q 002060 322 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDT 390 (973)
Q Consensus 322 v~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~~gd~ 390 (973)
..|++|.|.+++.+|++||.||+++|++||++||+++.+||+|+||+ ..+++|.||+|+|+++.+|+.
T Consensus 17 ~~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~-~~~~~h~YY~~kl~~~~~g~~ 84 (101)
T 2e60_A 17 SDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYKFIQKAMKEGRY 84 (101)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGS-TTSTHHHHHHHHHHHHHHTSC
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCC-CCCCCcHHHHHHHHHHHcCCC
Confidence 34667778999999999999999999999999999999999999995 789999999999999999874
No 12
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-17 Score=149.08 Aligned_cols=66 Identities=30% Similarity=0.499 Sum_probs=58.0
Q ss_pred ccccCCCchhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeeccCCcc
Q 002060 322 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (973)
Q Consensus 322 v~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (973)
+.|++| ++.++.+||+||+||++||++||++||++ +||+|+||+. ++++|.||+|||+++++|+..
T Consensus 15 ~~ii~P-Ppdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~-~~pyh~YY~~kl~e~~~~~~~ 80 (90)
T 2e5z_A 15 AAIIPP-PPDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQP-WHQYNAYYEFKKQFFLQKEGG 80 (90)
T ss_dssp CSCCCC-CTTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSS-SCSTHHHHHHHHHHHHHHTCC
T ss_pred CCccCC-CHHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCC-CCcccHHHHHHHHHHHhccCC
Confidence 334444 46799999999999999999999999987 8999999994 899999999999999998754
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=9.7e-16 Score=135.56 Aligned_cols=81 Identities=36% Similarity=0.625 Sum_probs=75.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
+++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|+.|+..|||..++|+.|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 47899999999999999999999999999999984 556888999999999999999999999999999999999999
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
|++.
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8754
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=142.94 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=74.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC-CcEECCeEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ-GVVVYEYELKI 262 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln-G~~i~Gr~LkV 262 (973)
+++|||+|||+.+|+++|+.+|++|| .|.+|+|+. +..+|.++|||||+|.+.++|++|+..|+ +..++|++|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~---d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMR---NKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSS---CSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 46899999999999999999999999 799999994 67789999999999999999999998874 56799999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||.+.+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9987653
No 15
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-15 Score=141.35 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=79.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
.+...++|||+|||+.+|+++|+.+|++||.|..|+|+. +..+++++|||||+|.+.++|+.|+..|++ .|.|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVIT---DRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESC---CSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345679999999999999999999999999999999994 566889999999999999999999999998 8999999
Q ss_pred EEEeecCCCCC
Q 002060 261 KIGWGKSVALP 271 (973)
Q Consensus 261 kV~~ak~~~~p 271 (973)
+|.|++....|
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999765443
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=143.04 Aligned_cols=80 Identities=11% Similarity=0.338 Sum_probs=74.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCC--eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc----EECCe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV----VVYEY 258 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~--I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~----~i~Gr 258 (973)
=.||||+|||+.+|+++|.++|++||. |.+|+|+. |+.+|+++|||||+|.+.++|+.|+..|||. .|+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~---d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK---DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC---CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe---cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 468999999999999999999999995 67899984 7788999999999999999999999999997 59999
Q ss_pred EEEEEeecC
Q 002060 259 ELKIGWGKS 267 (973)
Q Consensus 259 ~LkV~~ak~ 267 (973)
+|.|.||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=136.94 Aligned_cols=82 Identities=23% Similarity=0.527 Sum_probs=75.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+++++|+.+|++||.|.+|+|+. +..+|.++|||||.|.+.++|+.|+..|||..++|+.|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 468999999999999999999999999999999984 55678899999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
||++.
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99754
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=2.4e-15 Score=141.92 Aligned_cols=86 Identities=27% Similarity=0.438 Sum_probs=79.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
..+..++|||+|||+.+++++|+.+|++||.|..|+|+. +..+++++|||||+|.+.++|+.|+..|||..|.|+.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999999999999999999999999999994 55678999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 002060 261 KIGWGKSVA 269 (973)
Q Consensus 261 kV~~ak~~~ 269 (973)
+|.|+++..
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999987653
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=9.5e-16 Score=136.25 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=75.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|..+|++||.|..|.|+. +..+|+++|||||.|.+.++|+.|+..|||..++|+.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEE---CCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3579999999999999999999999999999999984 5568889999999999999999999999999999999999
Q ss_pred Eeec
Q 002060 263 GWGK 266 (973)
Q Consensus 263 ~~ak 266 (973)
.||+
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 20
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.62 E-value=3.6e-17 Score=139.45 Aligned_cols=60 Identities=32% Similarity=0.567 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeeccCCcc
Q 002060 331 HLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (973)
Q Consensus 331 ~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (973)
+++.+|++||.||+++|++||++||+++.+||+|+||++ .+++|.||+|+|+++.+|++.
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~-~~~~h~YY~~~l~~~~~g~~~ 61 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVSEFKEGKAQ 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGST-TSTTHHHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCC-CCCCchHHHHHHHHHHcCCCC
Confidence 578999999999999999999999999999999999995 899999999999999998753
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=138.36 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|++||.|..|+|+. +..+|.++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI---DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCC---CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3478999999999999999999999999999999984 5568889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++..
T Consensus 83 ~~a~~~~ 89 (99)
T 1whw_A 83 LPSTIKK 89 (99)
T ss_dssp EECCCCS
T ss_pred EEcCCCc
Confidence 9987654
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=8.9e-16 Score=145.42 Aligned_cols=79 Identities=28% Similarity=0.520 Sum_probs=72.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.+||||||||+.+|+++|+.+|++||.|.+|+|+. + ++.++|||||.|.+.++|+.|+..|||..|+|+.|+|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~---d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEee---c--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 57999999999999999999999999999999995 3 234789999999999999999999999999999999999
Q ss_pred ecCC
Q 002060 265 GKSV 268 (973)
Q Consensus 265 ak~~ 268 (973)
+++.
T Consensus 80 a~~~ 83 (115)
T 4f25_A 80 FKSR 83 (115)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8754
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=138.15 Aligned_cols=82 Identities=20% Similarity=0.434 Sum_probs=76.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|..|+|+. +..++.++|||||.|.+.++|+.|+. |||..|+|+.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY---DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECC---CTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4578999999999999999999999999999999994 56688899999999999999999997 9999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 84 ~~a~~~ 89 (99)
T 2dgs_A 84 KRAEPR 89 (99)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998755
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=139.15 Aligned_cols=84 Identities=29% Similarity=0.484 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|..+|++||.|..|+|+. +..+++++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCC---CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3578999999999999999999999999999999984 5668889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++..
T Consensus 87 ~~a~~~~ 93 (102)
T 2cqb_A 87 NLAKPMR 93 (102)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9987653
No 25
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=3.7e-15 Score=141.10 Aligned_cols=84 Identities=29% Similarity=0.408 Sum_probs=77.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
...+..++|||+|||+.+++++|+.+|++||.|.+|+|+. +..+|+++|||||+|.+.++|+.|+..|||..|+|+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECC---CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3455679999999999999999999999999999999994 5568899999999999999999999999999999999
Q ss_pred EEEEeec
Q 002060 260 LKIGWGK 266 (973)
Q Consensus 260 LkV~~ak 266 (973)
|+|.|++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999975
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-15 Score=138.40 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|++||.|..|+|+. +..+|.++|||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34579999999999999999999999999999999984 556788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9998765
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=136.64 Aligned_cols=83 Identities=30% Similarity=0.434 Sum_probs=77.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+++++|..+|++||.|..|.|+. +..++.++|||||.|.+.++|+.|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 566788999999999999999999999999999999999
Q ss_pred EEeecC
Q 002060 262 IGWGKS 267 (973)
Q Consensus 262 V~~ak~ 267 (973)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 28
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=136.76 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=77.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+++++|..+|++||.|..|+|+. +..+++++|||||.|.+.++|+.|+..|||..|.|+.|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK---DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEC---CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 468999999999999999999999999999999994 55688999999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|++..
T Consensus 81 ~a~~~ 85 (95)
T 2dnz_A 81 HVTER 85 (95)
T ss_dssp ESSCC
T ss_pred Ecccc
Confidence 98755
No 29
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=138.28 Aligned_cols=87 Identities=22% Similarity=0.317 Sum_probs=76.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|..+|++||.|..|.|+..+....++.++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 35689999999999999999999999999999999953211125688999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|++...
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987654
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=139.89 Aligned_cols=83 Identities=28% Similarity=0.397 Sum_probs=77.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|..|.|+. +..++.++|||||.|.+.++|+.|+..|||..|+|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPR---EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCB---CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4579999999999999999999999999999999984 5667889999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|++..
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 998765
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=137.64 Aligned_cols=83 Identities=14% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|++||.|..|+|+. +. +|+++|||||+|.+.++|+.|+..|||..++|+.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT---NR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999995 34 788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=1.8e-15 Score=140.33 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=78.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE---CC
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YE 257 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i---~G 257 (973)
.++..++|||+|||+.+++++|+.+|++||.|.+|+|+. +..+|+++|||||.|.+.++|+.|+..|||..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK---DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCC---CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 345679999999999999999999999999999999984 566889999999999999999999999999998 89
Q ss_pred eEEEEEeecCC
Q 002060 258 YELKIGWGKSV 268 (973)
Q Consensus 258 r~LkV~~ak~~ 268 (973)
+.|+|.|++..
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999998765
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=136.19 Aligned_cols=82 Identities=26% Similarity=0.536 Sum_probs=76.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sV-kI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..++|||+|||+.+++++|..+|++||.|..| +|+. +..+|.++|||||.|.+.++|+.|+..|||..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR---DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECC---CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEE---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 46899999999999999999999999999999 9984 5568889999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 81 ~~a~~~ 86 (96)
T 1x5t_A 81 SYAFKK 86 (96)
T ss_dssp EESCCC
T ss_pred EEeccc
Confidence 998765
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=2.7e-15 Score=136.91 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=76.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
+++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|+.|+..|||..++|+.|+|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMF---DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 58999999999999999999999999999999984 556789999999999999999999999999999999999999
Q ss_pred ecCCC
Q 002060 265 GKSVA 269 (973)
Q Consensus 265 ak~~~ 269 (973)
|++..
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 87653
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=138.76 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~s--------VkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~ 254 (973)
+..++|||+|||+.+++++|+.+|++||.|.. |+|+. +..+|+++|||||+|.+.++|+.|+..|||..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE---CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe---cCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45799999999999999999999999999999 99984 56788999999999999999999999999999
Q ss_pred ECCeEEEEEeec
Q 002060 255 VYEYELKIGWGK 266 (973)
Q Consensus 255 i~Gr~LkV~~ak 266 (973)
+.|+.|+|.||+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 36
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.6e-15 Score=137.25 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=75.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|+.+|++||.|.+|+|+. +. +|+++|||||+|.+.++|+.|+..|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE---DK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 4578999999999999999999999999999999995 33 4788999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998754
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=140.52 Aligned_cols=84 Identities=14% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..+++|||+|||+.+++++|..+|++||.|.+|.|+. +..+|.++|||||.|.+.++|+.|+..|||..|+|+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe---cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3578999999999999999999999999999999984 5667899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||++.+
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987653
No 38
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=141.99 Aligned_cols=82 Identities=27% Similarity=0.535 Sum_probs=76.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|.+|.|+. +. +|.++|||||+|.+.++|+.|+..|||..|.|+.|+|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIK---DR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEEC---ST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 468999999999999999999999999999999995 44 78899999999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
|++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998654
No 39
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=134.47 Aligned_cols=83 Identities=29% Similarity=0.509 Sum_probs=75.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|++||.|..|+|+.. . +.++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN---E--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC---T--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---C--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445799999999999999999999999999999999953 2 23789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 87 v~~a~~~~ 94 (103)
T 2cq3_A 87 VNNATARV 94 (103)
T ss_dssp EEECCSSC
T ss_pred EEEcccCC
Confidence 99987664
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=3.7e-16 Score=141.23 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=71.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG--~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+|||||||+.+|+++|.++|++|| .|.+|+|+. +..+|+++|||||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~---~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE---CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe---cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 5799999999999999999999999 999999994 66789999999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
++.+.
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 98754
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.9e-15 Score=137.87 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=77.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC------CcEEC
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ------GVVVY 256 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln------G~~i~ 256 (973)
...++|||+|||+.+|+++|..+|++||.|..|+|+. +..+|.++|||||.|.+.++|+.|+..|| |..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3578999999999999999999999999999999995 56688899999999999999999999999 99999
Q ss_pred CeEEEEEeecCC
Q 002060 257 EYELKIGWGKSV 268 (973)
Q Consensus 257 Gr~LkV~~ak~~ 268 (973)
|+.|+|.|+++.
T Consensus 90 g~~l~v~~a~~~ 101 (111)
T 1x4h_A 90 GRQLKVDLAVTR 101 (111)
T ss_dssp SCEEEEECCCCC
T ss_pred CEEEEEEECCCC
Confidence 999999998765
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=137.96 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=77.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCc-cccCCcccEEEEEeCCHHHHHHHHHHh-CCcEECCeE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTE-EERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYE 259 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d-~~tg~~rg~gFV~F~~~~dA~~Ai~~l-nG~~i~Gr~ 259 (973)
.+..++|||+|||+.+++++|..+|++||.|..|+|+. + ..+|.++|||||+|.+.++|+.|+..| ||..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK---KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCC---CCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEec---CCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 44579999999999999999999999999999999984 4 467889999999999999999999999 999999999
Q ss_pred EEEEeecCC
Q 002060 260 LKIGWGKSV 268 (973)
Q Consensus 260 LkV~~ak~~ 268 (973)
|+|.|+++.
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 999998765
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=138.67 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=77.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCee-EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE---
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIA-SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE--- 259 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~-sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~--- 259 (973)
..++|||+|||+.+++++|..+|++||.|. +|+|+. +..+|+++|||||.|.+.++|+.|+..|||..+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 479999999999999999999999999999 999994 5668899999999999999999999999999999999
Q ss_pred -EEEEeecCCC
Q 002060 260 -LKIGWGKSVA 269 (973)
Q Consensus 260 -LkV~~ak~~~ 269 (973)
|+|.||++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.1e-15 Score=137.71 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=77.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|..|+|+. +..++.++|||||+|.+.++|+.|+..|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4578999999999999999999999999999999984 5568899999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 998765
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=137.72 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|..+|++||.|..|+|+. +..++.++|||||+|.+.++|..|+..|||..|.|+.|+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVK---DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECC---CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3578999999999999999999999999999999994 5567889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|++...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9998653
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=4e-15 Score=139.11 Aligned_cols=83 Identities=14% Similarity=0.329 Sum_probs=77.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|+.|+..|||..|+|+.|+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCB---CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 5678899999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998765
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.8e-15 Score=138.67 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=77.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCee--------EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--------SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~--------sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
....++|||+|||+.+|+++|..+|++||.|. .|+|+. +..+|+++|||||+|.+.++|+.|+..|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL---DKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB---CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE---eCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44679999999999999999999999999999 599984 5578899999999999999999999999999
Q ss_pred EECCeEEEEEeecCC
Q 002060 254 VVYEYELKIGWGKSV 268 (973)
Q Consensus 254 ~i~Gr~LkV~~ak~~ 268 (973)
.|.|+.|+|.|++..
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 999999999998765
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=139.68 Aligned_cols=85 Identities=27% Similarity=0.513 Sum_probs=78.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
..+..++|||+|||+.+++++|..+|++||.|..|+|+. +..+|+++|||||.|.+.++|+.|+..|||..|+|+.|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE---ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345679999999999999999999999999999999994 55688899999999999999999999999999999999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
+|.|+++.
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998754
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.6e-15 Score=136.48 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=76.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|++||.|..|+|+. + +|.+++||||.|.+.++|+.|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM---E--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE---C--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---C--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34578999999999999999999999999999999994 3 788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 99987653
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=7.8e-16 Score=142.18 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=76.4
Q ss_pred CccEEEEeCCCC------CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 184 QTTNLYVGNLSP------QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 184 ~~ttLfVgNLp~------~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
..++|||+|||+ .+++++|..+|++||.|.+|+|+. +..||+++|||||+|.+.++|+.|+..|||..|.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPI---DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 368999999999 999999999999999999999984 67789999999999999999999999999999999
Q ss_pred -eEEEEEeecC
Q 002060 258 -YELKIGWGKS 267 (973)
Q Consensus 258 -r~LkV~~ak~ 267 (973)
+.|+|.||.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999864
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=135.21 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=73.1
Q ss_pred CccEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 184 QTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
..++|||+|||+.+++++|+ .+|++||.|.+|+|+. +..+ ++||||+|.+.++|+.|+..|||..|+|+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~---~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP---HTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS---CCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe---CCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46899999999999999999 9999999999999995 3333 789999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 002060 260 LKIGWGKSVA 269 (973)
Q Consensus 260 LkV~~ak~~~ 269 (973)
|+|.||++.+
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999987654
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=135.20 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+++++|..+|++||.|.+|+|+. +. +|+++|||||.|.+.++|+.|+..|||..++|+.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICK---DR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34579999999999999999999999999999999995 33 378899999999999999999999999999999999
Q ss_pred EEeecC
Q 002060 262 IGWGKS 267 (973)
Q Consensus 262 V~~ak~ 267 (973)
|.|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=6e-15 Score=136.63 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=76.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC---e
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---Y 258 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G---r 258 (973)
.+..++|||+|||+.+++++|..+|++||.|.+|+|+. +. +|.++|||||.|.+.++|+.|+..|||..+.| +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR---GP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 34579999999999999999999999999999999995 33 68889999999999999999999999999998 9
Q ss_pred EEEEEeecCCC
Q 002060 259 ELKIGWGKSVA 269 (973)
Q Consensus 259 ~LkV~~ak~~~ 269 (973)
.|+|.||+...
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999987653
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=132.75 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=74.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCC-cccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~-~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..++|||+|||+.+|+++|..+|++||.|.+|.|+. +..++. ++|||||.|.+.++|+.|+..|||..++|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV---ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---CCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 468999999999999999999999999999999984 444444 8999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998643
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=136.26 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=76.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+++++|+.+|++||.|..+.++. +..+|+++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEE---ECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEE---ECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 44578999999999999999999999999999888873 567889999999999999999999999999999999999
Q ss_pred EEeecC
Q 002060 262 IGWGKS 267 (973)
Q Consensus 262 V~~ak~ 267 (973)
|.|++.
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999764
No 56
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=140.01 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CcEECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln--G~~i~Gr~L 260 (973)
+..++|||+|||+.+|+++|+.+|++||.|.+|+|+. .+|||||+|.+.++|+.|+..|+ |..|.|++|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3579999999999999999999999999999999994 37999999999999999999886 478999999
Q ss_pred EEEeecCCCC
Q 002060 261 KIGWGKSVAL 270 (973)
Q Consensus 261 kV~~ak~~~~ 270 (973)
+|.||+...+
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.2e-14 Score=134.30 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++|| |.+|+|+. +..+|+++|||||+|.+.++|+.|+ .|||..|.|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVR---DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEee---cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3468999999999999999999999997 99999994 5678899999999999999999999 99999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 88 ~~a~~~ 93 (103)
T 2dng_A 88 DIAEGR 93 (103)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 998754
No 58
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=131.22 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=71.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|++||.|..|.|+ ++||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4567999999999999999999999999999999998 35999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9998765
No 59
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.58 E-value=1.2e-15 Score=150.89 Aligned_cols=129 Identities=15% Similarity=0.289 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhc-----ccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCCCCC-C
Q 002060 447 QRDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK-N 520 (973)
Q Consensus 447 ~r~~le~lL~~L-----t~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~~v~-n 520 (973)
..+.|+..|..| ..++.+|..++.||++|..++..||++|.+.|... +..+||..|||+|||++|+..+.. .
T Consensus 3 ~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~--~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 3 AVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC--KPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp HHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceeehhhhhHHHHHHhhhhcCCc
Confidence 467899999999 34779999999999999999999999999999764 578999999999999999963211 1
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhcc
Q 002060 521 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLR 586 (973)
Q Consensus 521 a~~yR~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~ 586 (973)
...|...|...|+.+|.+ +|. + .+..+.+|.+||++|+++.|||+++|..|+..+.+
T Consensus 81 ~~~f~~~F~~~L~~~f~~---~~~-~-----~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~~ 137 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQN---LYR-C-----PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAA 137 (145)
T ss_dssp TCSHHHHHHHHHHHHHHH---HTS-S-----CGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH---HHh-C-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcC
Confidence 235999999999999963 332 1 25789999999999999999999999999998864
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=137.89 Aligned_cols=82 Identities=24% Similarity=0.443 Sum_probs=76.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhcc-CCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE-ECCeEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~-fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~-i~Gr~Lk 261 (973)
..++|||+|||+.+|+++|..+|++ ||.|.+|+|+. +. +|.++|||||.|.+.++|..|+..|||.. |+|+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL---DQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE---CT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4689999999999999999999999 99999999995 44 78899999999999999999999999999 9999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987653
No 61
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1.2e-14 Score=138.96 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=77.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|.+|+|+. +. +|+++|||||.|.+.++|+.|+..|||..|+|+.|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC---CS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4578999999999999999999999999999999995 44 7889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997654
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-14 Score=132.86 Aligned_cols=82 Identities=34% Similarity=0.562 Sum_probs=74.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|++||.|.+|+|+.+ . +.++|||||.|.+.++|+.|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE---H--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC---C--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec---C--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345799999999999999999999999999999999953 2 23689999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 9998764
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=7.8e-15 Score=136.31 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=75.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|++||.|.+|+|+. +. +|+++|||||.|.+.++|+.|+..|||..|+|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY---DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4578999999999999999999999999999999995 44 7889999999999999999999999999999999999
Q ss_pred Eeec
Q 002060 263 GWGK 266 (973)
Q Consensus 263 ~~ak 266 (973)
.||.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 64
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=142.39 Aligned_cols=84 Identities=35% Similarity=0.511 Sum_probs=78.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|+.||.|.+|+|+. +..+|+++|||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE---ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44578999999999999999999999999999999994 566788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|++..
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9998765
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8e-15 Score=137.50 Aligned_cols=83 Identities=29% Similarity=0.516 Sum_probs=75.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
.....++|||+|||+.+++++|..+|++||.|.+|+|+. + ++.++|||||.|.+.++|+.|+..|||..++|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~--~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---N--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECC---B--TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEE---C--CCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345679999999999999999999999999999999985 2 23489999999999999999999999999999999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
+|.||++.
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998765
No 66
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=9.5e-15 Score=130.62 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=73.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|+++|||||.|.+.++|+.|+ .++|..++|+.|.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM---DPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 4578999999999999999999999999999999984 5668899999999999999999999 56889999999999
Q ss_pred Eee
Q 002060 263 GWG 265 (973)
Q Consensus 263 ~~a 265 (973)
.||
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7e-15 Score=136.29 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=77.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
++..++|||+|||+.+++++|..+|++||.|..|+|+. +..++.++|||||+|.+.++|+.|+.. ||..|.|+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 45679999999999999999999999999999999994 556888999999999999999999988 99999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99987553
No 68
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2e-14 Score=133.10 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcccc-CCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER-RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~t-g~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
...++|||+|||+.+++++|..+|+.|| |.+|.|+. +..+ |+++|||||+|.+.++|+.|+ .|||..|.|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCB---CSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEec---CCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3468999999999999999999999999 99999985 5555 889999999999999999999 9999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998754
No 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=5.7e-15 Score=133.33 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|+.+|++||.|..|+|+. .+|.++|||||.|.+.++|+.|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-----ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-----SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3468999999999999999999999999999999983 37789999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++..
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9987654
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.8e-15 Score=137.58 Aligned_cols=86 Identities=24% Similarity=0.333 Sum_probs=76.0
Q ss_pred CccEEEEeCCCCCCCHHHHH---HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 184 QTTNLYVGNLSPQVDENFLL---RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~---~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
..++|||+|||+.+++++|. .+|++||.|..|.|+..+....+++++|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999 999999999999998543222244677999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 002060 261 KIGWGKSVA 269 (973)
Q Consensus 261 kV~~ak~~~ 269 (973)
+|.||++.+
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999987653
No 71
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.9e-15 Score=129.78 Aligned_cols=76 Identities=29% Similarity=0.626 Sum_probs=71.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh-CCcEECCeEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYEL 260 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~l-nG~~i~Gr~L 260 (973)
++..++|||+|||+.+++++|..+|++||.|..|+|+. ++|||||.|.+.++|+.|+..| ||..++|++|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 44578999999999999999999999999999999984 4799999999999999999999 9999999999
Q ss_pred EEEeec
Q 002060 261 KIGWGK 266 (973)
Q Consensus 261 kV~~ak 266 (973)
+|.||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999985
No 72
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=8.9e-15 Score=135.69 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE--ECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~--i~Gr~L 260 (973)
+++++|||+|||+.+|+++|..+|++||.|.+|+|+. .+|||||+|.+.++|..|+..|||.. |.|++|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4578999999999999999999999999999999983 47999999999999999999999875 889999
Q ss_pred EEEeecCCCC
Q 002060 261 KIGWGKSVAL 270 (973)
Q Consensus 261 kV~~ak~~~~ 270 (973)
+|.|++...+
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999987643
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=133.78 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|++||.|..|+|+. ++.+++||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN------RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC------SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34578999999999999999999999999999999974 345789999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|++..
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 9998765
No 74
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=6.3e-15 Score=141.12 Aligned_cols=85 Identities=14% Similarity=0.279 Sum_probs=78.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
...+++|||+|||+.+|+++|..+|++||.|.+|.|+. +..+|.++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34578999999999999999999999999999999984 556889999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.||++..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99998654
No 75
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.8e-15 Score=137.76 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=76.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|+.||.|..|+|+. +..+|.++|||||+|.+.++|+.|+ .|||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS---DRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---SCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe---cCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 3578999999999999999999999999999999994 6677899999999999999999999 99999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998754
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=131.70 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=75.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|++||.|..|+|+. +..+|.++|||||.|.+.++|+.|+. ++..|+|+.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 34578999999999999999999999999999999994 55678999999999999999999997 57899999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+.+..
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99987653
No 77
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=134.70 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=74.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|+.|+..|||..+.|+.|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 478999999999999999999999999999999995 55688999999999999999999999999999999999988
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
|++
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=8.6e-15 Score=131.18 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=75.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|+++|||||+|.+.++|+.|+ .|||..+.|+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC---DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEE---SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 368999999999999999999999999999999984 5568899999999999999999999 999999999999999
Q ss_pred eecC
Q 002060 264 WGKS 267 (973)
Q Consensus 264 ~ak~ 267 (973)
|+++
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 9875
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=129.55 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=74.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|+.+|+.| .|.+|+|+. + .+|+++|||||.|.+.++|+.|+. |||..|+|+.|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~---~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR---N-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE---C-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE---C-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 356899999999999999999999999 999999995 4 578899999999999999999998 9999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|++..
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998765
No 80
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=6e-15 Score=142.80 Aligned_cols=85 Identities=12% Similarity=0.318 Sum_probs=77.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeE--EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc----
Q 002060 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV---- 253 (973)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~s--VkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~---- 253 (973)
..+..+++|||+|||+.+|+++|+.+|++||.|.. |+|+. +..+|+++|||||+|.+. +|..|+..|||.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~---d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIK---DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCB---CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEE---cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 33456789999999999999999999999999977 99994 677899999999999999 999999999999
Q ss_pred EECCeEEEEEeecCC
Q 002060 254 VVYEYELKIGWGKSV 268 (973)
Q Consensus 254 ~i~Gr~LkV~~ak~~ 268 (973)
.|+|+.|+|.|+++.
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 999999999999764
No 81
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4e-14 Score=131.61 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh--CCcEECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM--QGVVVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~l--nG~~i~Gr~L 260 (973)
+++++|||+|||+.+++++|..+|++||.|.+|.|+. .+|||||+|.+.++|+.|+..| ++..+.|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 4578999999999999999999999999999999983 3799999999999999999976 5788999999
Q ss_pred EEEeecCCCC
Q 002060 261 KIGWGKSVAL 270 (973)
Q Consensus 261 kV~~ak~~~~ 270 (973)
+|.||+...+
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999986654
No 82
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=134.56 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc--EECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~--~i~Gr~L 260 (973)
+++++|||+|||+.+++++|..+|++||.|..|.|+. .+|||||+|.+.++|..|+..|++. .|.|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4578999999999999999999999999999999983 3799999999999999999988764 5999999
Q ss_pred EEEeecCCCC
Q 002060 261 KIGWGKSVAL 270 (973)
Q Consensus 261 kV~~ak~~~~ 270 (973)
+|.|++...+
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999986543
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=8.2e-15 Score=146.67 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=75.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG--~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
..++|||||||+.+|+++|..+|+.|| .|.+|+|+. +..+|+++|||||+|.+.++|+.||..|||..|+|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~---d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE---NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 468999999999999999999999999 999999994 667899999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||.+.
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998643
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=138.97 Aligned_cols=82 Identities=28% Similarity=0.477 Sum_probs=75.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
..+..++|||+|||+.+++++|..+|++||.|..|+|+. +..+|+++|||||.|.+.++|+.|+..|||..|.|+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCC---CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEee---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345679999999999999999999999999999999984 55688999999999999999999999999999999999
Q ss_pred EEEee
Q 002060 261 KIGWG 265 (973)
Q Consensus 261 kV~~a 265 (973)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 85
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=8e-15 Score=141.91 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCccEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 183 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
+++++|||||||+.+++++|+ .+|++||.|.+|.|+. +|+++|||||+|.+.++|..|+..|||..|.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 447899999999999999866 7999999999998863 577899999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
+|+|.||+..
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999998754
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=5.9e-15 Score=134.02 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=74.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+|+++|+.+|++||.|..+.|+. +..+|+++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEE---ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE---eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 4468999999999999999999999999999888884 5678889999999999999999999999999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.6e-15 Score=137.69 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||||||+.+|+++|..+|++||+|.+|.|+. +.. |+++|||||+|.+.++|+.|+. +||..++|+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~---d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---TLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC---CCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE---CCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 4568999999999999999999999999999999995 444 8899999999999999999997 9999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.|+..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99764
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=9.2e-15 Score=141.62 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=77.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+++++|..+|++||.|..|+|++ +..+|+++|||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEEC---CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999995 567889999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998754
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.2e-15 Score=138.07 Aligned_cols=83 Identities=19% Similarity=0.423 Sum_probs=77.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|..|+|+. +..+|.++|||||.|.+.++|+.|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE---ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3578999999999999999999999999999999994 5567889999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 998754
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=1.4e-14 Score=130.75 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.++-||||||++.+||++|+++|.+||+|.+++|+. ++|||||+|.+.++|..|+..|||..++|++|+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 357899999999999999999999999999999984 68999999999999999999999999999999999
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
+|.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 984
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=2e-14 Score=142.81 Aligned_cols=84 Identities=27% Similarity=0.416 Sum_probs=78.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|++||.|..|+|+. +..+|+++|||||.|.+.++|+.|+..|||..|+|+.|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCC---CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34578999999999999999999999999999999984 567899999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||++.
T Consensus 144 v~~a~~~ 150 (158)
T 2kn4_A 144 VQMARYG 150 (158)
T ss_dssp EEEECCS
T ss_pred EEECCCC
Confidence 9999865
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=1.8e-15 Score=136.24 Aligned_cols=80 Identities=20% Similarity=0.411 Sum_probs=72.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
++|||+|||+.+++++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.+ |..|+..|||..++|+.|+|.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIY---DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECC---CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEE---cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 6899999999999999999999999999999994 5667899999999999999 99999999999999999999998
Q ss_pred cCCC
Q 002060 266 KSVA 269 (973)
Q Consensus 266 k~~~ 269 (973)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 93
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=134.86 Aligned_cols=86 Identities=10% Similarity=0.322 Sum_probs=77.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CcEECCeEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYEL 260 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~-I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln--G~~i~Gr~L 260 (973)
..++|||+|||+.+|+++|..+|++||. |.+|.|+. .+..+|.++|||||+|.+.++|+.|+..|| +..+.|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA--SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCS--SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEc--cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4689999999999999999999999998 99998873 356788999999999999999999999996 589999999
Q ss_pred EEEeecCCCCC
Q 002060 261 KIGWGKSVALP 271 (973)
Q Consensus 261 kV~~ak~~~~p 271 (973)
+|.||++...+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 94
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=2.6e-14 Score=142.17 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=77.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|++||.|..|+|+. +..++.+++||||+|.+.++|+.||..|||..|.|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL---DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3578999999999999999999999999999999994 5668889999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.||++.
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 999864
No 95
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=4.6e-14 Score=130.55 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.+.++|||+|||+.+|+++|..+|++||.|..|+|+ ++||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 346899999999999999999999999999999987 369999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++..
T Consensus 78 ~~a~~~~ 84 (103)
T 2dgu_A 78 VFAKPPD 84 (103)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9997654
No 96
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=129.84 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
+...++|||+|||+.+|+++|+.+|++||.| +|+. + .+++++|||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ---N-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCB---C-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEE---C-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3457999999999999999999999999987 5553 2 5788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99987653
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=134.31 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.8
Q ss_pred CccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC--cEECCeEE
Q 002060 184 QTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYEL 260 (973)
Q Consensus 184 ~~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG--~~i~Gr~L 260 (973)
+.++|||+|||+ .+|+++|..+|++||.|.+|.|+. .++||||+|.+.++|+.|+..||| ..|.|++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 468999999999 999999999999999999999984 358999999999999999999986 45999999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
+|.||+..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999854
No 98
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.54 E-value=2.6e-14 Score=134.06 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=73.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|+.||.|.+|+|+. +..+|.++|||||.|.+.++|+.|+..+ |..++|+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---CTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEE---CCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 34578999999999999999999999999999999994 6678899999999999999999999876 5999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+.+.
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998754
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=132.97 Aligned_cols=79 Identities=22% Similarity=0.496 Sum_probs=73.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+++++|..+|++||.|..|+|+. .+|||||.|.+.++|+.|+..|||..|.|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34578999999999999999999999999999999994 279999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++.+
T Consensus 93 v~~a~~~~ 100 (109)
T 1x4g_A 93 CYWGKESP 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998664
No 100
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=136.97 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|+.+|++||.|..|.|+. .++||||+|.+.++|+.|+..|||..+.|+.|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3468999999999999999999999999999999873 5789999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||+...
T Consensus 79 ~~a~~~~ 85 (111)
T 1whx_A 79 EWAPIGV 85 (111)
T ss_dssp EEEETTT
T ss_pred EECCCCc
Confidence 9997653
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-14 Score=132.85 Aligned_cols=76 Identities=25% Similarity=0.481 Sum_probs=71.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|+.+|++||.|.+|+|+. ++|||||.|.+.++|+.|+..|||..++|+.|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3468999999999999999999999999999999982 5799999999999999999999999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.||++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99875
No 102
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=1.4e-14 Score=132.10 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=74.0
Q ss_pred CCccEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 183 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
+++++|||+|||+.+++++|. .+|++||.|..|.|+. +|.++|||||.|.+.++|..|+..|||..++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 457899999999999999999 9999999999999872 567889999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
.|+|.|+++.
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999998764
No 103
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.4e-14 Score=144.05 Aligned_cols=83 Identities=14% Similarity=0.329 Sum_probs=77.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..+++|||+|||+.+|+++|..+|++||.|..|.|+. +..+|.++|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe---cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3478999999999999999999999999999999994 5568899999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.||++.
T Consensus 147 ~~a~~~ 152 (165)
T 1rk8_A 147 DWCFVK 152 (165)
T ss_dssp EESEEC
T ss_pred EEecCC
Confidence 998765
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=127.95 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=71.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|..+|++||.|..|+|+ ++||||+|.+.++|+.|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 357999999999999999999999999999999997 489999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++..
T Consensus 75 ~~a~~~~ 81 (90)
T 2dnq_A 75 EASKNKS 81 (90)
T ss_dssp ECSSCCC
T ss_pred EECCCCC
Confidence 9987653
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=134.23 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=73.7
Q ss_pred CccEEEEeCCCCCC------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 184 QTTNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 184 ~~ttLfVgNLp~~v------tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
..++|||||||+.+ |+++|..+|++||.|.+|.|+ ..+|+++|||||+|.+.++|+.|+..|||..|+|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 36899999999999 789999999999999999887 2478899999999999999999999999999999
Q ss_pred e-EEEEEeecCC
Q 002060 258 Y-ELKIGWGKSV 268 (973)
Q Consensus 258 r-~LkV~~ak~~ 268 (973)
+ +|+|.|+...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998654
No 106
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=6.8e-15 Score=127.85 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=70.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 187 tLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
+|||+|||+.+++++|..+|++||.|.+|.|+. +..+|+++|||||.|.+.++|+.|+. |||..++|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCB---CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999984 55678899999999999999999985 9999999999999986
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3e-14 Score=136.36 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=72.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC--cEECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG--~~i~Gr~L 260 (973)
+++++|||+|||+.+|+++|+.+|++||.|.+|+|+. .+|||||+|.+.++|+.|+..|++ ..|.|++|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 4578999999999999999999999999999999983 379999999999999999999984 68999999
Q ss_pred EEEeecCCCCC
Q 002060 261 KIGWGKSVALP 271 (973)
Q Consensus 261 kV~~ak~~~~p 271 (973)
+|.||+...+.
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 108
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=132.41 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=74.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE------
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV------ 255 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i------ 255 (973)
+...++|||+|||+.+|+++|+.+|++||.|..|+|+. +. +|.++|||||.|.+.++|+.|+..|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR---DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEE---CS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 44578999999999999999999999999999999995 44 788999999999999999999999999999
Q ss_pred --CCeEEEEEeecC
Q 002060 256 --YEYELKIGWGKS 267 (973)
Q Consensus 256 --~Gr~LkV~~ak~ 267 (973)
.|++|.|.||.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 578899999863
No 109
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=127.67 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=70.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+|+++|..+|++||.|..|+|+ ++||||+|.+.++|+.|+..|||..+.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 457899999999999999999999999999999998 359999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998755
No 110
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=8.4e-15 Score=135.04 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcc-ccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE-ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~-~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
+..++|||+|||+.+++++|..+|+.|| |.+|+|+. +. .+|+++|||||.|.+.++|..|+ .|||..|+|+.|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSC---CTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEe---cCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4579999999999999999999999999 99999984 44 57899999999999999999999 9999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998754
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=8.1e-15 Score=127.75 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=71.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
++|||+|||+.+++++|..+|++||.|..|.|+. +..+|+++|||||.|.+.++|+.|+..++ ..++|+.|.|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEEC---CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEec---CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999984 55678999999999999999999999999 9999999999997
No 112
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=129.11 Aligned_cols=77 Identities=29% Similarity=0.471 Sum_probs=71.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC--CeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--EYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~--Gr~L 260 (973)
+..++|||+|||+.+|+++|..+|++||.|.+|.|+. .++||||+|.+.++|+.|+..|||..|. |+.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK---------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS---------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC---------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 3468999999999999999999999999999999983 2689999999999999999999999999 9999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
+|.|+++.
T Consensus 86 ~V~~a~~~ 93 (97)
T 1why_A 86 RVDFAKSG 93 (97)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998764
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=3.7e-14 Score=132.99 Aligned_cols=79 Identities=29% Similarity=0.491 Sum_probs=72.0
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 179 d~~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
...+...++|||+|||+.+|+++|..+|++||.|..|+|+ +|||||+|.+.++|+.|+..|||..++|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3345668999999999999999999999999999999997 58999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
.|+|.|++..
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999998765
No 114
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=132.94 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|+.+|++||.|..|+|+. +..+|.++|||||.|.+.++|+.||.. +|..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR---DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEEC---CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3478999999999999999999999999999999994 567889999999999999999999977 999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 101 ~~a~~~ 106 (116)
T 1x4b_A 101 KRAVAR 106 (116)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 998765
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=128.68 Aligned_cols=77 Identities=25% Similarity=0.458 Sum_probs=72.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+|+++|+.+|++||.|..|+|+. .+|||||.|.+.++|+.|+..|||..|.|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 4578999999999999999999999999999999983 4799999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 84 ~~a~~~ 89 (99)
T 2cpj_A 84 RFACHS 89 (99)
T ss_dssp EESSCC
T ss_pred EEcCCC
Confidence 998764
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=1e-14 Score=142.35 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=78.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+|+++|..+|++||.|..|+|+. +..+++++|||||.|.+.++|+.|+..|||..|.|+.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC---CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 556789999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99988653
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4e-14 Score=133.69 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=74.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI-ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I-~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
...++|||+|||+.+|+++|..+|+.||.| ..|+|+. +. +|+++|||||+|.+.++|+.||.. ||..|+|+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV---DN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC---CT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 346899999999999999999999999999 8999995 44 889999999999999999999966 99999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+...
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998754
No 118
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=134.54 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=70.7
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CcEECCe
Q 002060 182 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEY 258 (973)
Q Consensus 182 dp~~ttLfVgNLp~~-vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln--G~~i~Gr 258 (973)
.++.++|||+|||+. +|+++|..+|++||.|.+|.|+. ++|||||+|.+.++|+.|+..|| +..|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---------MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 445789999999998 99999999999999999999983 57999999999999999999886 4569999
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
+|+|.||+..
T Consensus 93 ~l~V~~a~~~ 102 (112)
T 1x4f_A 93 CVKVDLSEKY 102 (112)
T ss_dssp CCEEEEECSC
T ss_pred EEEEEECccc
Confidence 9999999754
No 119
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=2.6e-14 Score=136.42 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=75.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|.+|+|+. +..+|.++|||||+|.+.++|+.|+ .|||..|+|+.|+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC---DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE---ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 368999999999999999999999999999999994 5578899999999999999999999 899999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|++..
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98743
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=2.5e-14 Score=135.22 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=71.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..++|||+|||+.+++++|+++|++|| .|..|.|+. +.++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 468999999999999999999999999 899999862 247899999999999999999999999999999999
Q ss_pred EeecC
Q 002060 263 GWGKS 267 (973)
Q Consensus 263 ~~ak~ 267 (973)
.+++.
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99864
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=6.9e-14 Score=128.47 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=71.0
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 182 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 182 dp~~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
.+.+++|||+|||+ .+++++|..+|++||.|.+|+|. +|||||+|.+.++|..|+..|||..++|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45679999999998 99999999999999999999985 5899999999999999999999999999999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
+|.|++..
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=125.85 Aligned_cols=76 Identities=29% Similarity=0.470 Sum_probs=70.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~f--G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
+..++|||+|||+.+|+++|+.+|++| |.|..|+++ ++||||+|.+.++|+.|+..|||..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 457899999999999999999999999 899999876 5799999999999999999999999999999
Q ss_pred EEEeecCCC
Q 002060 261 KIGWGKSVA 269 (973)
Q Consensus 261 kV~~ak~~~ 269 (973)
+|.|+++..
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=130.23 Aligned_cols=78 Identities=23% Similarity=0.476 Sum_probs=71.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
+..++|||+|||+.+++++|..+|++||.|. +.|++ ++++|||||+|.+.++|+.|+..|||..|+|+.|+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3468999999999999999999999999997 77773 467899999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998754
No 124
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-13 Score=127.63 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=70.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC-----e
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-----Y 258 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G-----r 258 (973)
..++|||+|||+.+|+++|..+|++||.|..|+|+. + |||||+|.+.++|+.||..|||..|.| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET---T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec---C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 468999999999999999999999999999999984 1 899999999999999999999999999 9
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
.|+|.||++.
T Consensus 84 ~i~V~~a~~~ 93 (108)
T 1x4c_A 84 YIRVKVDGPR 93 (108)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=4.7e-14 Score=132.86 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.+++|||+|||+.+|+++|..+|++||.|.+|.|+. .+.++|||||.|.+.++|..|+..|||..++|+.|.|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN------TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC------STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 468999999999999999999999999999999984 24568999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+++.
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 98643
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.2e-14 Score=127.49 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=68.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC-cEECCeEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG-VVVYEYELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~-I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG-~~i~Gr~Lk 261 (973)
..++|||+|||+.+|+++|+.+|++||. |..+.|+ ++|||||+|.+.++|+.|+..||| ..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4689999999999999999999999999 6666664 479999999999999999999999 999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9998754
No 127
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.9e-14 Score=128.84 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=73.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS-VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~s-VkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
...++|||+|||+.+|+++|..+|+.||.|.. |.|+. + .+|+++|||||+|.+.++|+.|+.. ||..|+|+.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~---~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV---D-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB---C-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEE---C-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 35689999999999999999999999999987 88874 4 6889999999999999999999976 99999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.++...
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9998654
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=126.50 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=72.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+..++|||+|||+.+|+++|.++|+.|+ .|+|+. +..+++++|||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34578999999999999999999999884 577774 456788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||++.
T Consensus 86 V~~a~~~ 92 (102)
T 2fc8_A 86 LDWAKPK 92 (102)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9998754
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.1e-14 Score=129.36 Aligned_cols=77 Identities=26% Similarity=0.409 Sum_probs=71.3
Q ss_pred CCccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
+..++|||+|||+ .+++++|..+|++||.|.+|.|. +|||||+|.+.++|+.|+..|||..+.|+.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4579999999999 99999999999999999999985 58999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 002060 262 IGWGKSVAL 270 (973)
Q Consensus 262 V~~ak~~~~ 270 (973)
|.|+++...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999986643
No 130
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=127.36 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=67.1
Q ss_pred cEEEEeCCCCCC------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe-
Q 002060 186 TNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 258 (973)
Q Consensus 186 ttLfVgNLp~~v------tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr- 258 (973)
++|||+|||+.+ ++++|..+|++||.|.+|.|+ ..+|+++|||||+|.+.++|+.|+..|||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 789999999999 789999999999999999987 24788999999999999999999999999999999
Q ss_pred EEEE
Q 002060 259 ELKI 262 (973)
Q Consensus 259 ~LkV 262 (973)
+|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 131
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=7e-14 Score=133.13 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=73.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~---I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
...++|||+|||+.+|+++|+.+|+.||. |..|+|+. +.. |+++|||||+|.+.++|+.||. |||..|+|+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIY---TRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEE---CSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34689999999999999999999999999 89999995 333 8899999999999999999997 9999999999
Q ss_pred EEEEeecCC
Q 002060 260 LKIGWGKSV 268 (973)
Q Consensus 260 LkV~~ak~~ 268 (973)
|+|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998543
No 132
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-14 Score=136.86 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=73.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|+.||.|..+.++. +..+|+++|||||+|.+.++|+.||. |||..|+|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~---~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA---YGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE---ECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE---ECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3468999999999999999999999999998865552 45688999999999999999999998 9999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 133
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=2.9e-14 Score=131.45 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=74.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|++||.|.+|+|+. +. +|.++|||||+|.+.++|+.|+. +|..++|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT---DR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34578999999999999999999999999999999995 44 78899999999999999999996 99999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|+|+...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9998755
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.3e-13 Score=122.63 Aligned_cols=74 Identities=26% Similarity=0.449 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|| .+|+++|+.+|++||.|..|.|. +++|||||.|.+.++|+.|+..|||..|.|+.|+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4689999996 89999999999999999999986 367999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+++.
T Consensus 83 ~a~~~ 87 (97)
T 1x5p_A 83 IARKQ 87 (97)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 98765
No 135
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=5.9e-14 Score=129.08 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=71.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
|+|||+|||+.+|+++|..+|++||.|.+|.|+. + ++|||||.|.+.++|+.|+..|||..++|+.|+|.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR---N-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES---S-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---C-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 6899999999999999999999999999999984 2 6899999999999999999999999999999999998
Q ss_pred cCCC
Q 002060 266 KSVA 269 (973)
Q Consensus 266 k~~~ 269 (973)
+..+
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8654
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.8e-14 Score=130.83 Aligned_cols=79 Identities=32% Similarity=0.460 Sum_probs=71.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCee----EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA----SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~----sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
+.+++|||+|||+.+|+++|..+|++||.|. .++++ +|+++|||||+|.+.++|+.|+..|||..|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3578999999999999999999999999994 44444 678899999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
.|+|.||++.
T Consensus 96 ~l~v~~a~~~ 105 (115)
T 2cpx_A 96 ILVIEFGKNK 105 (115)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999998765
No 137
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.46 E-value=4.2e-14 Score=150.15 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=75.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG--~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
..++|||+||++.+|+++|+.+|++|| .|.+|+|+. +..+|+++|||||+|.+.++|+.||..|||..|+|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~---d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 468999999999999999999999999 999999994 667899999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||+..
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998643
No 138
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9e-14 Score=131.93 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=70.4
Q ss_pred CccEEEE--eCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE-----C
Q 002060 184 QTTNLYV--GNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV-----Y 256 (973)
Q Consensus 184 ~~ttLfV--gNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i-----~ 256 (973)
++++||| |||++.+|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|+.|+..|||..+ .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3688999 77999999999999999999999998862 379999999999999999999999998 7
Q ss_pred CeEEEEEeecCCC
Q 002060 257 EYELKIGWGKSVA 269 (973)
Q Consensus 257 Gr~LkV~~ak~~~ 269 (973)
|++|+|.|++.++
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999998664
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-14 Score=132.42 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=73.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|+.||.|.. .++ .+..+|+++|||||.|.+.++|+.|+. |||..|.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~---~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAV---VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCC---CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEE---ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4689999999999999999999999999988 555 366788999999999999999999998 99999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+++.
T Consensus 91 ~a~~~ 95 (101)
T 1fj7_A 91 KPKGR 95 (101)
T ss_dssp CCSCC
T ss_pred EcCCC
Confidence 98754
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=3e-14 Score=139.57 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=72.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEE--EEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV--KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sV--kI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
.+++|||+|||+.+|+++|..+|++||.|..| +++..-....+|+++|||||.|.+.++|..|+..|||..|.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 36899999999999999999999999999875 1121000124788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.||++.
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999764
No 141
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=127.54 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|+++|+.||.| +|+|+. +. +|+++|||||+|.+.++|+.|| .+|+..|+|+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEI---GP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEE---SS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEE---CC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 346899999999999999999999999955 999985 44 7899999999999999999999 68999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 987643
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=5.8e-13 Score=154.17 Aligned_cols=83 Identities=17% Similarity=0.356 Sum_probs=77.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.||+++|..+|++||.|..|+|+. +..+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY---SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeec---cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 468999999999999999999999999999999994 66789999999999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
|++...
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998653
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=2.8e-13 Score=126.79 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=70.4
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 182 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 182 dp~~ttLfVgNLp~~-vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
.+..++|||+|||+. +++++|..+|++||.|..|.|. ++||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----------KGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----------TTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345689999999999 9999999999999999999883 6999999999999999999999999999999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
+|.|++..
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 99998753
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=125.15 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||+|||+.+++++|..+|+.||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3457999999999999999999999999988765 13577899999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 9998754
No 145
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=1e-13 Score=141.47 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|..|.|+. +. +|.++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC---CT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4578999999999999999999999999999999995 44 7889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987653
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=1e-13 Score=135.68 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=73.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~---I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
....++|||+|||+.+|+++|+++|+.||. |.+|+|+. +.. |+++|||||+|.+.++|+.|+. |||..|+|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~---d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY---TRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE---CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 345789999999999999999999999999 89999995 444 8899999999999999999998 999999999
Q ss_pred EEEEEeecC
Q 002060 259 ELKIGWGKS 267 (973)
Q Consensus 259 ~LkV~~ak~ 267 (973)
.|+|.++..
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999753
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=3.3e-13 Score=121.26 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=69.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+++++|+.+|++| .|.+|+|. +++|||||+|.+.++|+.|+..|||..++|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 46899999999999999999999999 99999885 368999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 148
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=7.2e-15 Score=138.93 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=77.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~s--------VkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
.+..++|||+|||+.+++++|..+|++||.|.. |+|+. +..+|+++|||||.|.+.++|+.|+..|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 345789999999999999999999999999998 88884 5667889999999999999999999999999
Q ss_pred EECCeEEEEEeecCC
Q 002060 254 VVYEYELKIGWGKSV 268 (973)
Q Consensus 254 ~i~Gr~LkV~~ak~~ 268 (973)
.|.|+.|+|.|+++.
T Consensus 81 ~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 81 EFSGNPIKVSFATRR 95 (116)
Confidence 999999999998754
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=122.73 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=67.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|.+| ++ +..+|+ ||||+|.+.++|+.|+. |||..|+|+.|+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 35799999999999999999999999999988 44 334444 99999999999999998 99999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
++...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87644
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.1e-13 Score=132.43 Aligned_cols=81 Identities=36% Similarity=0.618 Sum_probs=76.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|++||.|.+|.|+. +..+|.++|||||.|.+.++|..|+..|||..++|+.|+|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3578999999999999999999999999999999984 5568889999999999999999999999999999999999
Q ss_pred Eeec
Q 002060 263 GWGK 266 (973)
Q Consensus 263 ~~ak 266 (973)
.||+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2e-13 Score=141.13 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=77.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|..|+|+. +..+|+++|||||.|.+.++|..|+..|||..|+|+.|.|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLAR---DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 468999999999999999999999999999999994 55688899999999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
|+++.+
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 988664
No 152
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.44 E-value=3.5e-14 Score=123.23 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=69.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 187 tLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
+|||+|||+.+++++|..+|++||.|.+|.|+. +..+|.++|||||+|.+.++|+.|+. ++|..+.|+.|.|.||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPM---DNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCC---SCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999984 56678999999999999999999996 5999999999999885
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=6.7e-14 Score=130.68 Aligned_cols=80 Identities=9% Similarity=0.050 Sum_probs=73.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~---I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
...++|||+|||+.+|+++|..+|+.||. |.+|+|+. +.. |+++|||||+|.+.++|+.|+. |||..++|+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLL---NRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCC---CTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEE---CCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 35689999999999999999999999998 89999985 444 8899999999999999999997 9999999999
Q ss_pred EEEEeecC
Q 002060 260 LKIGWGKS 267 (973)
Q Consensus 260 LkV~~ak~ 267 (973)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999764
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.4e-13 Score=141.86 Aligned_cols=80 Identities=33% Similarity=0.550 Sum_probs=75.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
+.+||||||||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|..|+..|||..+.|+.|+|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR---DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEec---ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 468999999999999999999999999999999994 66789999999999999999999999999999999999999
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
|+.
T Consensus 91 ~~~ 93 (213)
T 4f02_A 91 WSQ 93 (213)
T ss_dssp ECC
T ss_pred ccc
Confidence 864
No 155
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=127.07 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=70.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|+++|+.| .|.+|.|+. +. .|+++|||||+|.+.++|+.|| .|||..|+|+.|.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLK---DH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECC---CT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEE---CC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 46899999999999999999999999 899999995 43 3889999999999999999999 899999999999998
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
.+.
T Consensus 89 ~a~ 91 (109)
T 2dnn_A 89 PAT 91 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.42 E-value=2.2e-13 Score=134.45 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=73.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
....++|||||||+.+|+++|..+|++||.|.+|+|+. + ++|||||.|.+.++|..|+..|||..|+|++|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR---N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS---S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee---C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44579999999999999999999999999999999984 2 589999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+++.
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998754
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=122.87 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=69.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEE-EeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK-IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVk-I~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
..++|||+|||+.+++++|..+|++||.|.+|+ |+. +..+ +.|||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~---~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT---DSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC---SSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 468999999999999999999999999999995 774 3333 33999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.||.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998765
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.42 E-value=5.2e-13 Score=131.80 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=75.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++|||+|||+.+|+++|..+|+.||.|.+|+|+. +..+|.++|||||.|.+.++|..|+..|||..+.|+.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 58999999999999999999999999999999994 556788999999999999999999999999999999999999
Q ss_pred ecC
Q 002060 265 GKS 267 (973)
Q Consensus 265 ak~ 267 (973)
+.+
T Consensus 79 ~~~ 81 (167)
T 1fxl_A 79 ARP 81 (167)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=4.7e-13 Score=132.67 Aligned_cols=80 Identities=28% Similarity=0.452 Sum_probs=75.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
+++|||+|||+.+++++|..+|+.||.|.+|+|+. +..+|.++|||||.|.+.++|..|+..|+|..+.|+.|.|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMR---DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---eCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 58999999999999999999999999999999984 556788999999999999999999999999999999999999
Q ss_pred ecC
Q 002060 265 GKS 267 (973)
Q Consensus 265 ak~ 267 (973)
+.+
T Consensus 80 ~~~ 82 (168)
T 1b7f_A 80 ARP 82 (168)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=7.4e-13 Score=119.77 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=62.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE--ECCeE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYE 259 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~--i~Gr~ 259 (973)
.+..++|||||||+.+|+++|+.+|++||.|.+|+|+. .++|||||+|.+.++|+. |+|.. +.|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 34579999999999999999999999999999999984 278999999999999883 56665 45999
Q ss_pred EEEEeecCC
Q 002060 260 LKIGWGKSV 268 (973)
Q Consensus 260 LkV~~ak~~ 268 (973)
|.|.+|.+.
T Consensus 76 v~v~~a~~k 84 (89)
T 3d2w_A 76 VHISNAEPK 84 (89)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999998653
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=8e-13 Score=128.20 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEeCCHHHHHHHHHHhCCcEECC--eEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~-gFV~F~~~~dA~~Ai~~lnG~~i~G--r~Lk 261 (973)
-..|||+||++.+|+++|..+|++||.|.+|+|+. +.+|| |||+|.+.++|+.|+..|||..|.| +.|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 46789999999999999999999999999998872 13577 9999999999999999999999998 9999
Q ss_pred EEeecCCC
Q 002060 262 IGWGKSVA 269 (973)
Q Consensus 262 V~~ak~~~ 269 (973)
|.|+++..
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998664
No 162
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=9.4e-13 Score=137.32 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=72.8
Q ss_pred CccEEEEeCCC-CCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 184 QTTNLYVGNLS-PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp-~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
.+++|||+||| ..+|+++|..+|++||.|.+|+|+.. .+|||||+|.+.++|+.|+..|||..+.|+.|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------STTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 47899999999 79999999999999999999999841 3799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 002060 263 GWGKSVAL 270 (973)
Q Consensus 263 ~~ak~~~~ 270 (973)
.|++...+
T Consensus 75 ~~s~~~~~ 82 (205)
T 3tyt_A 75 CVSKQPAI 82 (205)
T ss_dssp EECSCSCC
T ss_pred EEccCCcc
Confidence 99986543
No 163
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=1.5e-12 Score=125.47 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=67.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEeCCHHHHHHHHHHhCCcEECC--eEEEE
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELKI 262 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~-gFV~F~~~~dA~~Ai~~lnG~~i~G--r~LkV 262 (973)
..|||+||++.+|+++|..+|++||.|.+|+|+. + .|| |||+|.+.++|..|+..|||..|.| +.|+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~--------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R--------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S--------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C--------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3578999999999999999999999999999972 1 275 9999999999999999999999988 69999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.||++..
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998664
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=6.6e-13 Score=133.54 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC--eEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKI 262 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G--r~LkV 262 (973)
..+|||+||++.+|+++|..+|++||.|.+|.|+. ...++||||+|.+.++|+.|+..|||..|.| +.|+|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-------k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-------SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 46799999999999999999999999999999972 2357899999999999999999999999966 99999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++..
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 165
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.3e-13 Score=128.28 Aligned_cols=77 Identities=10% Similarity=0.238 Sum_probs=70.0
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCC----HHH----HHHHHH--HhC
Q 002060 186 TNLYVGNL----SPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN----RAD----GQAAKD--EMQ 251 (973)
Q Consensus 186 ttLfVgNL----p~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~----~~d----A~~Ai~--~ln 251 (973)
++|||||| |+.+++..|+.+|+.||.|.+|.++ +|+.||+++|||||.|.+ ..+ |..|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li---~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAF---NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEE---ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 78999999 9999999999999999999999999 588999999999999995 322 788888 789
Q ss_pred CcEECCeEEEEEee
Q 002060 252 GVVVYEYELKIGWG 265 (973)
Q Consensus 252 G~~i~Gr~LkV~~a 265 (973)
|..|+|+.|+|.+-
T Consensus 80 g~~I~Gr~irV~ln 93 (136)
T 2j8a_A 80 GCFIMGFKFEVILN 93 (136)
T ss_dssp CEEETTEEEEEEEC
T ss_pred CCeecCcEEEEEEC
Confidence 99999999999974
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.2e-12 Score=130.48 Aligned_cols=79 Identities=13% Similarity=0.331 Sum_probs=74.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|..|.|+. +..+|.++|||||.|.+.++|.+|+..|||..++|+.|.|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 368899999999999999999999999999999984 55688899999999999999999999999999999999999
Q ss_pred ee
Q 002060 264 WG 265 (973)
Q Consensus 264 ~a 265 (973)
||
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.2e-12 Score=133.27 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|+.||.|.+|+|+. +..+|.++|||||.|.+.++|..|+.. +|..+.|+.|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 4578999999999999999999999999999999994 567888999999999999999999955 999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 997643
No 168
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=8.1e-12 Score=135.14 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=75.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 182 DPQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
...+++|||+|||+.+|+++|+ .+|++||.|.+|+|+. +|+++|||||+|.+.++|..|+..|||..|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 3457999999999999999966 8999999999999983 67789999999999999999999999999999
Q ss_pred eEEEEEeecCCC
Q 002060 258 YELKIGWGKSVA 269 (973)
Q Consensus 258 r~LkV~~ak~~~ 269 (973)
+.|+|.|++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997643
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.4e-13 Score=120.04 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=64.7
Q ss_pred CccEEEEeCCCCCCCHHH----HHHHhccC-CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 184 QTTNLYVGNLSPQVDENF----LLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~----L~~lF~~f-G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
..|.|||+|||..+++++ |.++|++| |.|.+| +| |+|||.|.+.++|++|+..|||..+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 456699999999999988 56899999 499886 22 9999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 002060 259 ELKIGWGKSV 268 (973)
Q Consensus 259 ~LkV~~ak~~ 268 (973)
+|+|.||+..
T Consensus 75 ~i~v~~A~~~ 84 (96)
T 2diu_A 75 RIIVSFTPKN 84 (96)
T ss_dssp CCEEESSCCS
T ss_pred eEEEEecCCC
Confidence 9999999765
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=1.2e-12 Score=125.45 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=69.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|| .+|+++|..+|++||.|.+|.|+ .++|||||.|.+.++|+.|+..|||..|.|+.|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35789999996 69999999999999999999997 36799999999999999999999999999999999
Q ss_pred EeecCCC
Q 002060 263 GWGKSVA 269 (973)
Q Consensus 263 ~~ak~~~ 269 (973)
.|+++.+
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9987653
No 171
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=5.9e-13 Score=141.94 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=71.5
Q ss_pred CCCccEEEEeCCCCCC---------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 002060 182 DPQTTNLYVGNLSPQV---------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (973)
Q Consensus 182 dp~~ttLfVgNLp~~v---------tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG 252 (973)
+..+++||||||+..+ ++++|..+|++||.|.+|+|+. ++|||||.|.+.++|+.|+.+|+|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 4468999999999998 7999999999999999999993 579999999999999999999999
Q ss_pred cEE------------CCeEEEEEeecCCCCC
Q 002060 253 VVV------------YEYELKIGWGKSVALP 271 (973)
Q Consensus 253 ~~i------------~Gr~LkV~~ak~~~~p 271 (973)
..| .|+.|.|.||+..+.|
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 999 8999999999876543
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.36 E-value=1.4e-12 Score=136.06 Aligned_cols=78 Identities=28% Similarity=0.528 Sum_probs=72.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEe
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ 264 (973)
.++|||+|||+.+|+++|..+|++||.|..|+|+. + ++.++|||||.|.+.++|+.|+..|||..|+|++|.|.|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~---d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeec---c--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 57899999999999999999999999999999985 3 234789999999999999999999999999999999999
Q ss_pred ecC
Q 002060 265 GKS 267 (973)
Q Consensus 265 ak~ 267 (973)
|++
T Consensus 178 a~~ 180 (213)
T 4f02_A 178 FKS 180 (213)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=122.86 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=67.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|+.+|++||.|. +.++..+....+|+++|||||+|.+.++|+.|+..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 368899999999999999999999999999 8777533222237899999999999999999999995 4889988887
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 644
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=2.3e-12 Score=131.37 Aligned_cols=83 Identities=12% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+++++|..+|++||.|..|.|+. +..+|.++|||||.|.+.++|..|+..|||..|+|+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEE---CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEee---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4578999999999999999999999999999999984 5568889999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+++.
T Consensus 189 ~~a~~~ 194 (198)
T 2yh0_A 189 QRASVG 194 (198)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998754
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.7e-12 Score=115.57 Aligned_cols=71 Identities=27% Similarity=0.475 Sum_probs=66.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~f----G-------~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG 252 (973)
..++|||+|||+.+++++|..+|++| | .|.+|+|+. .+|||||+|.+.++|+.|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 46899999999999999999999999 8 899999983 3799999999999999999 9999
Q ss_pred cEECCeEEEEEe
Q 002060 253 VVVYEYELKIGW 264 (973)
Q Consensus 253 ~~i~Gr~LkV~~ 264 (973)
..+.|+.|+|..
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.34 E-value=8.6e-13 Score=130.81 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=74.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|.+|+. ++|..++|+.|.|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML---DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC---SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 357999999999999999999999999999999984 55688999999999999999999996 99999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
||.+.
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98753
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=3.7e-13 Score=132.28 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=71.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|+++|++|| |.+|+|+. +.. |+++|||||+|.+.++|+.|| .+|+..|+|+.|.|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~---d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI---GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC---SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE---CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 467899999999999999999999999 67999985 443 889999999999999999999 899999999999998
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
++...
T Consensus 119 ~a~~~ 123 (139)
T 2hgn_A 119 LNSTT 123 (139)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 87644
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2e-12 Score=115.93 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=64.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|.+|+|+. .++|||||+|.+.++|+.|+.. +..+.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEE
Confidence 468999999999999999999999999999999984 2689999999999999754311 344699999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+++.
T Consensus 74 ~a~~~ 78 (88)
T 1wf0_A 74 NAEPK 78 (88)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98754
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.33 E-value=1.4e-12 Score=126.05 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCee--EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~--sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
...++|||+|||+.+|+++|+++|+.| .|. .|+|+. +.. |+++|||||+|.+.++|+.|+. +++..|+|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~---d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPV---DPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCC---CSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 346889999999999999999999999 566 899985 444 8999999999999999999996 58899999999
Q ss_pred EEEeecC
Q 002060 261 KIGWGKS 267 (973)
Q Consensus 261 kV~~ak~ 267 (973)
.|.++..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 180
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.4e-12 Score=125.76 Aligned_cols=79 Identities=32% Similarity=0.521 Sum_probs=71.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
.+|||+|||+.+|+++|..+|++||.|.+|+|+..+ +++++|||||.|.+.++|..|+..|||..+.|+.|+|.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC----C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC----CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 479999999999999999999999999999999532 4678999999999999999999999999999999999997
Q ss_pred cCC
Q 002060 266 KSV 268 (973)
Q Consensus 266 k~~ 268 (973)
...
T Consensus 77 ~~~ 79 (166)
T 3md3_A 77 FQS 79 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.7e-12 Score=122.87 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=65.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE----
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE---- 259 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~---- 259 (973)
..++|||+|||+.+|+++|..+|++||.|..|.|+. + |||||+|.+.++|+.||..|||..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT---T-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec---C-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 468899999999999999999999999999999984 1 89999999999999999999999999998
Q ss_pred -EEEEeec
Q 002060 260 -LKIGWGK 266 (973)
Q Consensus 260 -LkV~~ak 266 (973)
|+|..+.
T Consensus 85 ~i~v~~~~ 92 (115)
T 3beg_B 85 YIRVKVDG 92 (115)
T ss_dssp BCEEEECC
T ss_pred EEEeccCC
Confidence 5555543
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=126.07 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=71.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCe----eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPI----ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I----~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
..++|||+|||+.+|+++|+++|+.||.| ..|.|+. + .+|+++|||||+|.+.++|+.||.. |+..|+|+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~---d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVT---Y-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEE---C-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEE---C-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeE
Confidence 46899999999999999999999999986 6899984 3 4789999999999999999999965 999999999
Q ss_pred EEEEeecC
Q 002060 260 LKIGWGKS 267 (973)
Q Consensus 260 LkV~~ak~ 267 (973)
|.|..+..
T Consensus 97 i~V~~a~~ 104 (123)
T 2dha_A 97 IELFRSTA 104 (123)
T ss_dssp ECCEEECH
T ss_pred EEEEECCH
Confidence 99988753
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.32 E-value=3.8e-12 Score=129.49 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|+.||.|..|.|+. +..+|.++|||||.|.+.++|.+|+.. +|..|+|+.|.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEee---cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3468999999999999999999999999999999994 556788999999999999999999965 899999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.||.+.
T Consensus 178 ~~a~~k 183 (196)
T 1l3k_A 178 RKALSK 183 (196)
T ss_dssp EECC--
T ss_pred EecCCh
Confidence 998755
No 184
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.32 E-value=3.7e-12 Score=126.12 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC--eEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G--r~L 260 (973)
...++|||+|||+.+++++|..+|++||.|..|.|+. +..+|.++|||||.|.+.++|..|+..|||..+.| ++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR---DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 3468999999999999999999999999999999984 55678889999999999999999999999999988 999
Q ss_pred EEEee
Q 002060 261 KIGWG 265 (973)
Q Consensus 261 kV~~a 265 (973)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=3.3e-12 Score=131.98 Aligned_cols=81 Identities=23% Similarity=0.505 Sum_probs=72.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|+.||.|.+|+|+. +..+|.++|||||.|.+.++|..|+..|||..|.|+.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 368999999999999999999999999999999984 56678899999999999999999999999999999999998
Q ss_pred eecC
Q 002060 264 WGKS 267 (973)
Q Consensus 264 ~ak~ 267 (973)
|+..
T Consensus 104 ~~~~ 107 (216)
T 2qfj_A 104 RPSN 107 (216)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8643
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.28 E-value=4.8e-12 Score=124.84 Aligned_cols=79 Identities=22% Similarity=0.426 Sum_probs=72.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe--EEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY--ELK 261 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr--~Lk 261 (973)
..++|||+|||+.+++++|..+|++||.|..|+|+. +..+|.++|||||.|.+.++|..|+..|||..+.|+ +|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 468899999999999999999999999999999984 556788999999999999999999999999999996 489
Q ss_pred EEee
Q 002060 262 IGWG 265 (973)
Q Consensus 262 V~~a 265 (973)
|.||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=5.4e-12 Score=125.04 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=71.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
+.++|||+|||+.+|+++|..+|+.||.|.+|+|+. +..+|+++|||||.|.+.++|..|+.. +..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMK---DPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCC---CTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---CCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 368999999999999999999999999999999984 567889999999999999999999974 679999999998
Q ss_pred eec
Q 002060 264 WGK 266 (973)
Q Consensus 264 ~ak 266 (973)
|+.
T Consensus 77 ~~~ 79 (167)
T 2cjk_A 77 RAI 79 (167)
T ss_dssp ECC
T ss_pred ccc
Confidence 864
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.27 E-value=1.3e-11 Score=123.59 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=70.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|++||.|..+ ..+|.++|||||.|.+.++|..|+..|||..|+|+.|+|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 357899999999999999999999999988765 136788999999999999999999999999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.||++.
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 998753
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.27 E-value=6.5e-12 Score=125.05 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC---CeE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYE 259 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~---Gr~ 259 (973)
...++|||+|||+.+|+++|..+|++||.|.+|+|+. + .+|.++|||||.|.+.++|..|+..|||..+. |++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR---G-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---C-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE---C-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 3578999999999999999999999999999999985 3 25788999999999999999999999998876 499
Q ss_pred EEEEee
Q 002060 260 LKIGWG 265 (973)
Q Consensus 260 LkV~~a 265 (973)
|.|.||
T Consensus 169 l~V~~a 174 (175)
T 3nmr_A 169 MVVKFA 174 (175)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 999997
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.27 E-value=6.9e-12 Score=124.88 Aligned_cols=81 Identities=17% Similarity=0.434 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC--CcccEEEEEeCCHHHHHHHHHHhCCcEEC---Ce
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRNCGFVAFMNRADGQAAKDEMQGVVVY---EY 258 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg--~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~---Gr 258 (973)
..++|||+|||+.+|+++|..+|++||.|.+|+|+. +..+| +++|||||.|.+.++|+.|+..|||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR---DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 368999999999999999999999999999999994 44555 78999999999999999999999998876 57
Q ss_pred EEEEEeecC
Q 002060 259 ELKIGWGKS 267 (973)
Q Consensus 259 ~LkV~~ak~ 267 (973)
.+.+.++..
T Consensus 79 ~~~~~~~~~ 87 (175)
T 3nmr_A 79 PIQMKPADS 87 (175)
T ss_dssp CCEEEECGG
T ss_pred ceEEccccc
Confidence 777777553
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=1.2e-11 Score=127.78 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|++||.|.+|+|+.+. +|.++|||||+|.+.++|+.|+..+ +..++|+.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~----~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL----HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT----TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC----CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 36899999999999999999999999999999998532 4788999999999999999999665 469999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|++..
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 97653
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.25 E-value=2.2e-11 Score=113.80 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=70.4
Q ss_pred CccEEEEeCCCC-----CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 184 QTTNLYVGNLSP-----QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 184 ~~ttLfVgNLp~-----~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
.+++|+|.||.. .-++++|+.+|++||.|.+|.|+.++ ..+++++|||||.|.+.++|..|+..|||..++|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~--~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIP--GAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECS--SCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCC--CCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 468999999963 23789999999999999999998522 12367899999999999999999999999999999
Q ss_pred EEEEEeecC
Q 002060 259 ELKIGWGKS 267 (973)
Q Consensus 259 ~LkV~~ak~ 267 (973)
.|.|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.24 E-value=1.9e-11 Score=132.21 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=71.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC-CeE
Q 002060 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 259 (973)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~-Gr~ 259 (973)
..+.+++|||+|||..+|+++|+.+|++||.|.+|+|+.. .+|||||.|.+.++|..|+..|||..|. |+.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG--------RHDIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC--------CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 3446789999999999999999999999999999999841 1589999999999999999999999999 999
Q ss_pred EEEEeec
Q 002060 260 LKIGWGK 266 (973)
Q Consensus 260 LkV~~ak 266 (973)
|+|.||+
T Consensus 275 l~v~~ak 281 (282)
T 3pgw_A 275 MKISFAK 281 (282)
T ss_pred EEEEEec
Confidence 9999986
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.23 E-value=1.6e-11 Score=133.49 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=74.0
Q ss_pred CCccEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccc-cCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEE
Q 002060 183 PQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (973)
Q Consensus 183 p~~ttLfVgNLp~~-vtE~~L~~lF~~fG~I~sVkI~~pr~d~~-tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~L 260 (973)
...++|||+|||+. +|+++|..+|+.||.|..|+|+. +.. ||.++|||||.|.+.++|..|+ .|||..|+|+.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA---GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS---CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe---cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 45789999999999 99999999999999999999985 333 5889999999999999999999 999999999999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
.|.||++.
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99998754
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.21 E-value=3.4e-11 Score=130.31 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=76.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
..++|||+|||+.+|+++|..+|+.||.|..|+|+. +..+|.++|||||.|.+.++|..|+..|||..++|+.|.|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 358999999999999999999999999999999984 56688999999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+.+.
T Consensus 171 ~a~~~ 175 (284)
T 3smz_A 171 WTDAG 175 (284)
T ss_dssp ECCGG
T ss_pred ECCCC
Confidence 98654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.20 E-value=3.7e-11 Score=129.29 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=70.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|..+|+.||.|.+|+|+. ++|||||.|.+.++|..|+..|||..|.|+.|+|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 4578999999999999999999999999999999973 5799999999999999999999999999999999
Q ss_pred Eeec
Q 002060 263 GWGK 266 (973)
Q Consensus 263 ~~ak 266 (973)
.|+.
T Consensus 91 ~~a~ 94 (261)
T 3sde_A 91 RFAT 94 (261)
T ss_dssp EECC
T ss_pred eecc
Confidence 9975
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.20 E-value=1.6e-11 Score=129.55 Aligned_cols=78 Identities=24% Similarity=0.423 Sum_probs=72.4
Q ss_pred CCccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
+.+++|||+|||+ .+++++|..+|++||.|.+|+|+. + .+|||||.|.+.++|+.|+..|||..+.|+.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~---~-----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC---T-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE---C-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4579999999999 999999999999999999999995 2 278999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|++..
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999765
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.19 E-value=9.5e-11 Score=119.92 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=71.4
Q ss_pred ccEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~-~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
+++|||+|||+ .+++++|..+|++||.|.+|+|+.. .+|||||.|.+.++|..|+..|||..+.|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--------CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 58999999999 9999999999999999999999852 27899999999999999999999999999999999
Q ss_pred eecCCC
Q 002060 264 WGKSVA 269 (973)
Q Consensus 264 ~ak~~~ 269 (973)
|++...
T Consensus 75 ~a~~~~ 80 (198)
T 1qm9_A 75 LSKHQN 80 (198)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998653
No 199
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.19 E-value=4.1e-11 Score=129.74 Aligned_cols=82 Identities=12% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCccEEEEeCCCCCC-CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q 002060 183 PQTTNLYVGNLSPQV-DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (973)
Q Consensus 183 p~~ttLfVgNLp~~v-tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~Lk 261 (973)
...++|||+|||+.+ |+++|..+|+.||.|.+|+|+. + .+|+++|||||.|.+.++|..|+..|||..++|+.|.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC---G-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE---C-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE---C-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 457899999999995 9999999999999999999985 2 2688999999999999999999999999999999999
Q ss_pred EEeecCC
Q 002060 262 IGWGKSV 268 (973)
Q Consensus 262 V~~ak~~ 268 (973)
|.|+.+.
T Consensus 258 v~~a~~~ 264 (284)
T 3smz_A 258 VSFCAPG 264 (284)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9998754
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.19 E-value=7.1e-12 Score=125.48 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=71.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV 262 (973)
...++|||+|||+.+|+++|+.+|..||.|..+.|. +..+|.++|||||.|.+.++|..|+ .|||..+.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~----~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV----DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC----EEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE----ECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 347999999999999999999999999988763332 5567889999999999999999999 69999999999999
Q ss_pred EeecCC
Q 002060 263 GWGKSV 268 (973)
Q Consensus 263 ~~ak~~ 268 (973)
.|+...
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 997643
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.19 E-value=2.8e-11 Score=123.83 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC-CeE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 259 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~-Gr~ 259 (973)
.+++++|||+|||+.+++++|..+|++|| .|..|+|+. ..+|||||.|.+.++|..|+..|||..++ |+.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS--------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 34579999999999999999999999999 999999984 13789999999999999999999999999 999
Q ss_pred EEEEeecC
Q 002060 260 LKIGWGKS 267 (973)
Q Consensus 260 LkV~~ak~ 267 (973)
|+|.|+++
T Consensus 189 l~v~~a~~ 196 (198)
T 1qm9_A 189 LRVSFSKS 196 (198)
T ss_dssp CCEEEECC
T ss_pred EEEEeecc
Confidence 99999875
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.17 E-value=4.3e-11 Score=126.20 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC-CeE
Q 002060 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 259 (973)
Q Consensus 182 dp~~ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~-Gr~ 259 (973)
.+.+++|||+|||+.+++++|+.+|++|| .|..|+|+. ..+|||||.|.+.++|..|+..|||..++ |+.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 34579999999999999999999999999 999999983 24789999999999999999999999999 999
Q ss_pred EEEEeecC
Q 002060 260 LKIGWGKS 267 (973)
Q Consensus 260 LkV~~ak~ 267 (973)
|+|.|+++
T Consensus 220 l~v~~a~~ 227 (229)
T 2adc_A 220 LRVSFSKS 227 (229)
T ss_dssp CEEEECSS
T ss_pred EEEEEecC
Confidence 99999875
No 203
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.5e-10 Score=108.79 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=67.4
Q ss_pred CccEEEEeCCCCCCC-----------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 002060 184 QTTNLYVGNLSPQVD-----------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (973)
Q Consensus 184 ~~ttLfVgNLp~~vt-----------E~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG 252 (973)
.+++|+|.||..... +++|+.+|++||.|.+|.|. ++ .++|||||.|.+.++|+.|+..|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~------~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR------HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT------CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC------CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 478999999954432 68999999999999999664 21 3789999999999999999999999
Q ss_pred cEECCeEEEEEeecCC
Q 002060 253 VVVYEYELKIGWGKSV 268 (973)
Q Consensus 253 ~~i~Gr~LkV~~ak~~ 268 (973)
..++|++|+|.|+.+.
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 9999999999998654
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=9.1e-11 Score=116.72 Aligned_cols=74 Identities=26% Similarity=0.472 Sum_probs=67.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~f----G-------~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG 252 (973)
+.++|||+|||+.+|+++|..+|++| | .|.++++. +++|||||.|.+.++|..|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 46899999999999999999999999 6 77777776 35899999999999999999 9999
Q ss_pred cEECCeEEEEEeecC
Q 002060 253 VVVYEYELKIGWGKS 267 (973)
Q Consensus 253 ~~i~Gr~LkV~~ak~ 267 (973)
..+.|+.|+|.|+..
T Consensus 73 ~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHD 87 (172)
T ss_dssp CEETTEECEEECCSS
T ss_pred cEecCceeeecCCcc
Confidence 999999999998543
No 205
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.14 E-value=4.7e-11 Score=124.46 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=68.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhccCCCe--eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe--
Q 002060 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI--ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY-- 258 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~L~~lF~~fG~I--~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr-- 258 (973)
+++++|||+|||+.+|+++|+++|++||.| .+|+|+. + .+..+|||||+|.+.++|..||..|||..|.|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~---~--~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS---G--KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS---C--CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc---C--CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 456899999999999999999999999999 8999984 2 244579999999999999999999999999886
Q ss_pred --EEEEEee
Q 002060 259 --ELKIGWG 265 (973)
Q Consensus 259 --~LkV~~a 265 (973)
++.|.||
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 5777665
No 206
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.13 E-value=8.3e-12 Score=111.81 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeee
Q 002060 329 DRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385 (973)
Q Consensus 329 d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~ 385 (973)
....+.+|++||.||+++|..||.+||+++.+||+|+||. ..+++|.||+|+|.++
T Consensus 28 ~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~-p~h~~~~yy~~~v~~Y 83 (85)
T 2dt7_B 28 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLR-PQHSLFNYFTKLVEQY 83 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGS-TTSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCC-CCCCchHHHHHHHHHH
Confidence 4566799999999999999999999999999999999997 6899999999998654
No 207
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1.8e-10 Score=107.56 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=68.6
Q ss_pred CccEEEEeCC--CCCCC--------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 184 QTTNLYVGNL--SPQVD--------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 184 ~~ttLfVgNL--p~~vt--------E~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
+++.|.|.|+ +..+. +++|+.+|++||.|.+|+|+.++ +..+++++|||||.|.+.++|.+|+..|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~-~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV-DGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCB-TTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccC-CCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4688999998 33333 36899999999999999998543 1123467999999999999999999999999
Q ss_pred EECCeEEEEEeec
Q 002060 254 VVYEYELKIGWGK 266 (973)
Q Consensus 254 ~i~Gr~LkV~~ak 266 (973)
.++|+.|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999964
No 208
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.11 E-value=1.8e-10 Score=117.23 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=66.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~f----G-------~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG 252 (973)
..++|||+|||+.+|+++|..+|+.| | .|.++.+. +++|||||.|.+.++|+.|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 36899999999999999999999999 5 56666554 46899999999999999999 9999
Q ss_pred cEECCeEEEEEeecCC
Q 002060 253 VVVYEYELKIGWGKSV 268 (973)
Q Consensus 253 ~~i~Gr~LkV~~ak~~ 268 (973)
..|.|+.|+|.|+...
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 9999999999998754
No 209
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.10 E-value=4.1e-11 Score=111.73 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=64.1
Q ss_pred EEeCCCCCCCHHHHHHHh------------ccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC
Q 002060 189 YVGNLSPQVDENFLLRTF------------GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (973)
Q Consensus 189 fVgNLp~~vtE~~L~~lF------------~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~ 256 (973)
++.||++.+++++|.++| ++||.|.+|.|+.++ +++++|||||.|.+.++|.+|+..|||..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~----~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL----GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS----SSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC----CCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367888999998887776 999999999998532 3688999999999999999999999999999
Q ss_pred CeEEEEEee
Q 002060 257 EYELKIGWG 265 (973)
Q Consensus 257 Gr~LkV~~a 265 (973)
|+.|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999985
No 210
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=9.2e-11 Score=131.29 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCccEEEEeC--CCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEEC---C
Q 002060 183 PQTTNLYVGN--LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---E 257 (973)
Q Consensus 183 p~~ttLfVgN--Lp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~---G 257 (973)
.++.+||||| |++.+||++|.++|++||.|.+|.|.. +||||||+|.+.++|+.|+..|||..+. |
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 4578999999 578999999999999999999987752 4799999999999999999999999983 4
Q ss_pred e--EEEEEeecCCC
Q 002060 258 Y--ELKIGWGKSVA 269 (973)
Q Consensus 258 r--~LkV~~ak~~~ 269 (973)
+ .|+|.|+..++
T Consensus 87 ~~~~ly~~~~~~~~ 100 (345)
T 3tht_A 87 QKITLYLNFVEKVQ 100 (345)
T ss_dssp CEEECEEEECSSEE
T ss_pred CceEEEEEEeeccc
Confidence 4 68889886543
No 211
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.07 E-value=1.8e-10 Score=125.11 Aligned_cols=80 Identities=11% Similarity=0.250 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~ 263 (973)
.++|||+|||+.+++++|..+|+.|| .|..|.|+.. . .|.++|||||.|.+.++|..|+..|||..+.|+.|.|.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL---R-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC---C-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 68999999999999999999999999 9999999853 2 26789999999999999999999999999999999999
Q ss_pred eecCC
Q 002060 264 WGKSV 268 (973)
Q Consensus 264 ~ak~~ 268 (973)
|+.+.
T Consensus 193 ~a~~~ 197 (292)
T 2ghp_A 193 VSNPL 197 (292)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98644
No 212
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.6e-10 Score=102.60 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEeecCC
Q 002060 195 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 268 (973)
Q Consensus 195 ~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~ak~~ 268 (973)
+.+++++|+.+|++||.|..|.|+ ++++|||||+|.+.++|+.|+..+++ +.|++|+|.|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 25789999999999999999988665 68999999998765
No 213
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.07 E-value=2.1e-10 Score=123.36 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=72.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh-CCcEEC---CeEE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVY---EYEL 260 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~l-nG~~i~---Gr~L 260 (973)
.++|||+|||+.+|+++|..+|+.||.|..|.|+. + .+|+++|||||.|.+.++|..|+..| +|..+. |++|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV---D-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee---C-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 57899999999999999999999999999999984 4 47889999999999999999999999 555555 9999
Q ss_pred EEEeecCC
Q 002060 261 KIGWGKSV 268 (973)
Q Consensus 261 kV~~ak~~ 268 (973)
.|.|+...
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99998754
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.00 E-value=8.3e-10 Score=105.36 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=69.4
Q ss_pred CccEEEEeCCCC--CC---CHHHHHHHhccCCCeeEEEEeCCCC-ccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC
Q 002060 184 QTTNLYVGNLSP--QV---DENFLLRTFGRFGPIASVKIMWPRT-EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (973)
Q Consensus 184 ~~ttLfVgNLp~--~v---tE~~L~~lF~~fG~I~sVkI~~pr~-d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G 257 (973)
++++|+|.|+-. .+ -+++|+++|++||.|.+|+|+.++. ...+++++||+||.|.+.++|..|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 368899999842 22 3689999999999999999996431 11256778999999999999999999999999999
Q ss_pred eEEEEEeec
Q 002060 258 YELKIGWGK 266 (973)
Q Consensus 258 r~LkV~~ak 266 (973)
+.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999963
No 215
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=98.83 E-value=7.8e-09 Score=85.20 Aligned_cols=56 Identities=68% Similarity=1.066 Sum_probs=53.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhhhcccCCC
Q 002060 815 PDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 870 (973)
Q Consensus 815 ~~~~~~ee~r~~~~~~~~~~~~~~~~~ee~g~~~~ee~~~~~~~~r~~~~~~~~~~ 870 (973)
.++.|+||+|+++|+||+++|+||++||++|..+-++++.+++..|+++..+||++
T Consensus 6 ~~~~~~ee~r~klR~IEvk~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~~~~~ 61 (61)
T 2e62_A 6 SGNGMDEEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLS 61 (61)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 57799999999999999999999999999999988999999999999999999874
No 216
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=98.81 E-value=8.9e-10 Score=109.44 Aligned_cols=128 Identities=17% Similarity=0.345 Sum_probs=101.0
Q ss_pred HHHHHHHHHhc-----ccCHHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeeccccccCC---CCC
Q 002060 448 RDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSA---PVK 519 (973)
Q Consensus 448 r~~le~lL~~L-----t~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhns~~---~v~ 519 (973)
.++|+..|..| ..++..|...+.||++|..+...||++|...+. .+|...||..||+|..|+.|+.. ++.
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ik--k~p~~hKL~~LYVvDSIvR~~~~~~~k~g 80 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSR--LCPDSHKLGSLYIIDSIGRAYLDETRSNS 80 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHH--HSCGGGHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--hCCCcceeeeeeehHHHHHHHHHHHHhcC
Confidence 57899999988 468999999999999999999999999999886 45689999999999999999751 111
Q ss_pred ---Cc--hhhH---HHHHHhhHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 002060 520 ---NA--SAYR---TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (973)
Q Consensus 520 ---na--~~yR---~~fe~~Lp~if~~l~~~~~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (973)
+| ..|- ..|...++.+|.. +|..+ .+..|.||.+||++|+...+||++.|+.|++.+.
T Consensus 81 ~~~~a~~gt~a~~v~~~~e~i~~l~~~---~~~~~-----~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~ 146 (157)
T 3clj_A 81 NSSSNKPGTCAHAINTLGEVIQELLSD---AIAKS-----NQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCF 146 (157)
T ss_dssp C----STTSHHHHHHHHHHHHHHHHHH---HHHHS-----CHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHH
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHH---HHHcC-----CHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhh
Confidence 00 1242 3467777766653 23322 3688999999999999999999999988877664
No 217
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.77 E-value=2.8e-08 Score=94.16 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=63.4
Q ss_pred ccEEEEeCCCCCC----------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE
Q 002060 185 TTNLYVGNLSPQV----------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (973)
Q Consensus 185 ~ttLfVgNLp~~v----------tE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~ 254 (973)
++.|.+.|+=..- -+++|+.+|++||.|.+|.|..+ ..+|||||.|.+.++|..|+..|||..
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-------~~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-------CTTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-------CCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678888874321 13578999999999999999742 148999999999999999999999999
Q ss_pred ECCeEEEEEeec
Q 002060 255 VYEYELKIGWGK 266 (973)
Q Consensus 255 i~Gr~LkV~~ak 266 (973)
++|+.|+|.|+.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999974
No 218
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=8.4e-08 Score=86.76 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=60.9
Q ss_pred CccEEEEeCCCC----CCCH----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEE
Q 002060 184 QTTNLYVGNLSP----QVDE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255 (973)
Q Consensus 184 ~~ttLfVgNLp~----~vtE----~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i 255 (973)
+-.||+|.-++. +.-+ .+|...|++||.|..|+|+. +.+||+|.+.++|.+|+. |||..+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCeEe
Confidence 446788887762 3333 57889999999999999994 227999999999999996 999999
Q ss_pred CCeEEEEEeecCC
Q 002060 256 YEYELKIGWGKSV 268 (973)
Q Consensus 256 ~Gr~LkV~~ak~~ 268 (973)
+|+.|+|.++++-
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999998754
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.5e-07 Score=90.05 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=64.0
Q ss_pred CCccEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCC-HHHHHHHHHHhC--CcEECCe
Q 002060 183 PQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN-RADGQAAKDEMQ--GVVVYEY 258 (973)
Q Consensus 183 p~~ttLfVgNLp~~-vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~-~~dA~~Ai~~ln--G~~i~Gr 258 (973)
+.++.|||+||++. ++.++|+.+|+.||.|..|.++. ....|||.|.+ ..+|..|+..|| |..|.|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~---------g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR---------GAKEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT---------TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 45899999999999 99999999999999999999984 22359999999 899999999994 7889998
Q ss_pred EEEEEe
Q 002060 259 ELKIGW 264 (973)
Q Consensus 259 ~LkV~~ 264 (973)
.+++..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 877764
No 220
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.45 E-value=8.4e-09 Score=85.48 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeeec
Q 002060 329 DRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 386 (973)
Q Consensus 329 d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~~ 386 (973)
.++++.+|++||.||+..|++-+++-- .++||-|.||+|.+|.+|.||+-||-++.
T Consensus 4 ~~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r 59 (66)
T 1x4p_A 4 GSSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQ 59 (66)
T ss_dssp SCCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHH
Confidence 346778999999999999999666655 56799999999999999999999997664
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=6.9e-07 Score=81.22 Aligned_cols=70 Identities=27% Similarity=0.391 Sum_probs=59.1
Q ss_pred CCccEEEEeCCCCC------CCH---HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 183 PQTTNLYVGNLSPQ------VDE---NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 183 p~~ttLfVgNLp~~------vtE---~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
|+-.||+|..+++. ..+ .+|.+.|..||.|..|+|+. +. +||+|.+.++|.+||. |||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---Cc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34578999988743 232 46889999999999999994 21 8999999999999997 9999
Q ss_pred EECCeEEEEEe
Q 002060 254 VVYEYELKIGW 264 (973)
Q Consensus 254 ~i~Gr~LkV~~ 264 (973)
.++|+.|+|.+
T Consensus 81 ~v~Gr~L~V~~ 91 (95)
T 1ufw_A 81 KVKGRAVKISG 91 (95)
T ss_dssp EETTEEEEEEC
T ss_pred eeCCeEEEEec
Confidence 99999999987
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.21 E-value=1.2e-06 Score=91.68 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=60.4
Q ss_pred CHHHHHHHhccCCCeeEEEEeCCC-CccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEee
Q 002060 198 DENFLLRTFGRFGPIASVKIMWPR-TEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (973)
Q Consensus 198 tE~~L~~lF~~fG~I~sVkI~~pr-~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~LkV~~a 265 (973)
.+++|...|++||.|.+|.|+.+. .+..+++++|++||.|.+.++|.+|+..|||..++|+.|.|.|.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 568999999999999999998532 23456789999999999999999999999999999999999985
No 223
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=97.94 E-value=1.6e-06 Score=85.55 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHhcCCCCcccccccCCCCCcceeEEEeeee
Q 002060 331 HLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385 (973)
Q Consensus 331 ~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~f~FL~d~~s~~h~YYrwrl~s~ 385 (973)
.-+.+|..||.||+++|. |+..|++++. ||+|.||. +.+++|.||...|.++
T Consensus 6 ~dldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~-p~h~l~~~F~~lv~qY 57 (152)
T 4dgw_B 6 RDMEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMN-SSHPLHKTFTDFVAQY 57 (152)
T ss_dssp HHHHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGS-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCC-CCCccHHHHHHHHHHH
Confidence 446899999999999999 9999999999 99999996 8999999999888543
No 224
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00022 Score=65.87 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=64.1
Q ss_pred ccEEEEeCCCCCC-CH----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 185 TTNLYVGNLSPQV-DE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 185 ~ttLfVgNLp~~v-tE----~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
.++|+|.||+..| .. +.++.+|..|+++.+...+. +-.-..|.|.+.++|.+|-..|++..++|+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk---------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK---------SFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET---------TTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC---------cceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 4789999999866 32 57799999999999887773 2233489999999999999999999999999
Q ss_pred EEEEeecCCC
Q 002060 260 LKIGWGKSVA 269 (973)
Q Consensus 260 LkV~~ak~~~ 269 (973)
|+|-||.+.+
T Consensus 76 ~r~YFgq~~~ 85 (104)
T 1wey_A 76 MKLYFAQTLH 85 (104)
T ss_dssp CEEECCCCSS
T ss_pred eEEEecCCCC
Confidence 9999998554
No 225
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00017 Score=67.02 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=64.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccC-----CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCeE
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRF-----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~f-----G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr~ 259 (973)
..+|-+-|||.+|+...++.+...| |.|..|.+.+ ..+-|+|+|.+...|-+|.-+|||..|.|+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---------DH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---------DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---------TTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---------CCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4778899999999999999999999 9999999985 2467899999999999999999999999999
Q ss_pred EEEEe
Q 002060 260 LKIGW 264 (973)
Q Consensus 260 LkV~~ 264 (973)
|+|+=
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99973
No 226
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.13 E-value=0.043 Score=50.08 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=45.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln 251 (973)
....||+-+.|+...-.+|..+|+.||.| .|+.+ | -..|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~Wi----d------DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI----D------DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEE----E------TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEE----c------CCeEEEEecCHHHHHHHHHhcc
Confidence 34445544999999999999999999965 46666 2 2468999999999999998763
No 227
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.77 E-value=0.1 Score=48.03 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=55.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhcc-----CCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECCe
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGR-----FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~-----fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~Gr 258 (973)
...+|.|.|||+.++++.|.-+|+. =|.|.+|... . +-|+|+|.+...|++.++ -....|+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~----------~-~~AvItF~d~~va~rVL~-k~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL----------G-CGGVLTFREPADAERVLA-QADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE----------T-TEEEEEESSHHHHHHHHT-CSCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc----------C-CcEEEEEcChHHHHHHhc-CCcceecCe
Confidence 3689999999999999999999965 2568888776 1 678999999999999873 335678888
Q ss_pred EEEEE
Q 002060 259 ELKIG 263 (973)
Q Consensus 259 ~LkV~ 263 (973)
+|.|.
T Consensus 75 ~LsV~ 79 (104)
T 2dhx_A 75 QLSLR 79 (104)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 88884
No 228
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.40 E-value=0.14 Score=48.53 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=55.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcEECC-eEEEE
Q 002060 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-YELKI 262 (973)
Q Consensus 184 ~~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~G-r~LkV 262 (973)
..+-|.|-+.|+.. -..+...|.+||.|.+.... ...++-.|.|.++.+|++|| ..||..|+| -.|-|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEE
Confidence 46789999999985 56677789999999877652 14588899999999999998 779999986 44444
Q ss_pred Ee
Q 002060 263 GW 264 (973)
Q Consensus 263 ~~ 264 (973)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 229
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.06 E-value=0.35 Score=43.71 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=54.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC-CcccEEEEEeCCHHHHHHHHHHhCCcEEC
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR-RQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg-~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~ 256 (973)
++|-|-+|||++||+++.+.++.+..+.-...+..+ ...+ ..-.-|+|.|.+.+++..-...++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~--~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND--TSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC--CSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc--cCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 578999999999999999999998877665555321 1111 12345899999999999999999999973
No 230
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.94 E-value=0.19 Score=46.04 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=43.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 002060 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 187 tLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln 251 (973)
.||+-+.|+...-.+|..+|+.||.| .|+.+ + -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~Wi----d------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI----D------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEE----E------TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEE----c------CCeEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999944 45555 2 2468999999999999998764
No 231
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=91.80 E-value=0.16 Score=40.96 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.3
Q ss_pred hhhcCChhHHHHHHHhcCccccCChHHHHHHHhhhhHHHH
Q 002060 636 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEK 675 (973)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~~~~~~ 675 (973)
.|.+|-..+|...|+.+||.+.|.+.+||+||..+...+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 5778899999999999999999999999999987765543
No 232
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=88.52 E-value=0.39 Score=39.29 Aligned_cols=37 Identities=32% Similarity=0.538 Sum_probs=32.7
Q ss_pred hhhcCChhHHHHHHHhcCccccCChHHHHHHHhhhhH
Q 002060 636 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLED 672 (973)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~~~ 672 (973)
.|.+|-..+|...|+.+||.+.|.+.+||+||..+-.
T Consensus 9 ~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 9 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp CTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 4667889999999999999999999999999976533
No 233
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=88.40 E-value=0.49 Score=37.95 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=32.3
Q ss_pred hhhhcCChhHHHHHHHhcCccccCChHHHHHHHhhh
Q 002060 635 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (973)
Q Consensus 635 ~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~ 670 (973)
..|.+|-..+|...|+.+||.+.|.+.+||+||..+
T Consensus 8 ~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 8 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp CCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred CCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 356788899999999999999999999999999654
No 234
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=88.14 E-value=0.44 Score=41.32 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=35.1
Q ss_pred hhhhhcCChhHHHHHHHhcCccccCChHHHHHHHhhhhHH
Q 002060 634 IKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDA 673 (973)
Q Consensus 634 ~~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~~~~ 673 (973)
...|.+|-..+|...|+.+||.+.|.+.+||+||..+...
T Consensus 23 ~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 23 PANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred hHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 3467889999999999999999999999999999876443
No 235
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.25 E-value=1.9 Score=41.40 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=52.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEeCCCC---------ccccC-CcccEEEEEeCCHHHHHHHHHHhCCc
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRT---------EEERR-RQRNCGFVAFMNRADGQAAKDEMQGV 253 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sV-kI~~pr~---------d~~tg-~~rg~gFV~F~~~~dA~~Ai~~lnG~ 253 (973)
.+-|.|-+.|+..+ ..+...|++||.|.+- .+..+.. ..-.+ ...++-.|.|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 35677888877654 5566789999998652 1110000 00000 13577899999999999998 89999
Q ss_pred EECCeEEEEEee
Q 002060 254 VVYEYELKIGWG 265 (973)
Q Consensus 254 ~i~Gr~LkV~~a 265 (973)
+|+|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999986666553
No 236
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.17 E-value=0.26 Score=47.66 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=35.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh-CCcEECCeEEEEEeecC
Q 002060 228 RQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYELKIGWGKS 267 (973)
Q Consensus 228 ~~rg~gFV~F~~~~dA~~Ai~~l-nG~~i~Gr~LkV~~ak~ 267 (973)
..+|+++|+|.+.++|++|+..| ||..++| .|.+.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999999 9999999 999998754
No 237
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=84.49 E-value=0.57 Score=45.39 Aligned_cols=36 Identities=6% Similarity=0.035 Sum_probs=28.6
Q ss_pred EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCcE
Q 002060 214 SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (973)
Q Consensus 214 sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~lnG~~ 254 (973)
+++|+. + ...++|||||+|.+.++|+.|+..+++..
T Consensus 2 ~~kl~l---n--~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLIL---N--GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEE---E--CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEe---c--CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 466663 2 23589999999999999999999988654
No 238
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=82.98 E-value=3 Score=38.03 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=49.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC-CcccEEEEEeCCHHHHHHHHHHhCCcEEC
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR-RQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg-~~rg~gFV~F~~~~dA~~Ai~~lnG~~i~ 256 (973)
+-.|-|-.|||++||+++.+.++.+-.+.....+.. +...+ ..-.-|+|.|.+.++...-...++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G--~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAA--DLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCC--CSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCC--ccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 356899999999999999888876655432222211 11111 11245799999999999999999999873
No 239
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=82.57 E-value=0.61 Score=53.99 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=39.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHH
Q 002060 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247 (973)
Q Consensus 186 ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai 247 (973)
.+|||. .|..+++.+|...|++||+|.++.+-. . ...|+.|+|.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-----~---~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-----S---FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-----S---SSEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-----c---CCeEEEEEeCCHHHHHHHH
Confidence 679997 799999999999999999999987752 1 2379999999998888664
No 240
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=72.05 E-value=3.9 Score=38.21 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=34.7
Q ss_pred hhhhhhhcCChhHHHHHHHhcCccccCChHHHHHHHhhh
Q 002060 632 AAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (973)
Q Consensus 632 ~~~~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~ 670 (973)
.....+.+|-.++|...|+..||.+.|.+.+||+||..|
T Consensus 32 ~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~y 70 (114)
T 2rnn_A 32 ETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNF 70 (114)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHH
Confidence 345568899999999999999999999999999999655
No 241
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=60.40 E-value=15 Score=42.84 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=45.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 002060 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (973)
Q Consensus 185 ~ttLfVgNLp~~vtE~~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dA~~Ai~~ln 251 (973)
...++|+ +|..+...+|..+|+.||.| .|+.+ ...+|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi----------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI----------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC----------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE----------cCCeEEEEECCHHHHHHHHHHHH
Confidence 3466666 99999999999999999964 56666 34679999999999999998885
No 242
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=54.47 E-value=8.8 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.4
Q ss_pred hhhhhcCChhHHHHHHHhcCccccCChHHHHHHHhhh
Q 002060 634 IKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (973)
Q Consensus 634 ~~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rLl~~ 670 (973)
.-.|..+...+|...|+..||++.|...+||+||..+
T Consensus 58 ~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~ 94 (151)
T 1jjr_A 58 KGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 94 (151)
T ss_dssp HTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHT
T ss_pred cCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 3467889999999999999999999999999999655
No 243
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=34.30 E-value=8.4 Score=35.18 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCccEEEEeCCCCCCCHHH
Q 002060 183 PQTTNLYVGNLSPQVDENF 201 (973)
Q Consensus 183 p~~ttLfVgNLp~~vtE~~ 201 (973)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3467899999999999864
Done!