BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002062
         (973 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RLG|A Chain A, Crystal Structure Of Loxosceles Intermedia Phospholipase D
           Isoform 1 H12a Mutant
          Length = 302

 Score = 30.0 bits (66), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 286 GFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCP--- 342
           G  P  +H LEG  +P+      V+    I   +N  A   E      V F     P   
Sbjct: 13  GLVPRGSHMLEGNRRPIWIMGAMVNAIGQIDEFVNLGANSIETD----VSFDDNANPEYT 68

Query: 343 --GIPCDEKTSCPKLLDGQSLIKYFR 366
             GIPCD   +C K  +    +K  R
Sbjct: 69  YHGIPCDCGRNCKKYENFNDFLKGLR 94


>pdb|2JKA|A Chain A, Native Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron
 pdb|2JKA|B Chain B, Native Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron
 pdb|2JKE|A Chain A, Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Deoxynojirimycin
 pdb|2JKE|B Chain B, Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Deoxynojirimycin
 pdb|2JKP|A Chain A, Structure Of A Family 97 Alpha-Glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Castanospermine
 pdb|2JKP|B Chain B, Structure Of A Family 97 Alpha-Glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Castanospermine
          Length = 727

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 742 DGMVVNGHEGEVVDDSQRHLHLDESKLMHKA 772
           DG+ +N HE  +VD S  HL+LD+  ++ ++
Sbjct: 226 DGLYINLHEAALVDYSCMHLNLDDKNMVFES 256


>pdb|2D73|A Chain A, Crystal Structure Analysis Of Susb
 pdb|2D73|B Chain B, Crystal Structure Analysis Of Susb
 pdb|2ZQ0|A Chain A, Crystal Structure Of Susb Complexed With Acarbose
 pdb|2ZQ0|B Chain B, Crystal Structure Of Susb Complexed With Acarbose
          Length = 738

 Score = 29.6 bits (65), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 742 DGMVVNGHEGEVVDDSQRHLHLDESKLMHKA 772
           DG+ +N HE  +VD S  HL+LD+  ++ ++
Sbjct: 237 DGLYINLHEAALVDYSCMHLNLDDKNMVFES 267


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,787,579
Number of Sequences: 62578
Number of extensions: 1119166
Number of successful extensions: 2249
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2246
Number of HSP's gapped (non-prelim): 3
length of query: 973
length of database: 14,973,337
effective HSP length: 108
effective length of query: 865
effective length of database: 8,214,913
effective search space: 7105899745
effective search space used: 7105899745
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)