Query 002064
Match_columns 973
No_of_seqs 261 out of 1239
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 15:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 1E-217 2E-222 1827.2 70.8 895 2-928 1-905 (996)
2 PLN02701 alpha-mannosidase 100.0 2E-175 4E-180 1613.5 88.2 840 22-915 23-950 (1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 1E-161 2E-166 1372.6 58.1 840 23-916 146-1052(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 1E-105 3E-110 999.7 79.4 771 39-924 3-822 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 1.1E-77 2.5E-82 658.7 45.4 704 37-930 278-1021(1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 9.6E-60 2.1E-64 517.0 24.7 270 41-353 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 3.8E-49 8.3E-54 484.8 29.8 666 41-929 199-897 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 1.1E-39 2.3E-44 384.9 34.6 382 490-931 1-402 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.8 2.3E-21 5.1E-26 170.7 3.6 75 358-432 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 8.2E-20 1.8E-24 160.5 7.0 74 359-432 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.8 1.4E-20 3.1E-25 232.8 -3.2 358 38-434 2-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.4 1.7E-06 3.6E-11 99.1 10.8 120 75-196 29-195 (360)
13 COG1543 Uncharacterized conser 95.9 0.02 4.4E-07 65.0 7.9 122 72-195 75-207 (504)
14 PF01522 Polysacc_deac_1: Poly 95.3 0.18 4E-06 47.7 11.0 103 76-191 18-122 (123)
15 COG1449 Alpha-amylase/alpha-ma 94.8 1.3 2.8E-05 54.2 18.8 97 93-191 162-262 (615)
16 TIGR02764 spore_ybaN_pdaB poly 93.5 0.62 1.3E-05 48.2 11.1 101 79-192 22-124 (191)
17 TIGR03212 uraD_N-term-dom puta 92.9 8.8 0.00019 42.7 19.4 109 76-198 77-187 (297)
18 TIGR02884 spore_pdaA delta-lac 92.3 1 2.2E-05 47.9 10.8 102 80-193 54-157 (224)
19 TIGR03006 pepcterm_polyde poly 89.1 3.3 7.1E-05 45.3 11.2 111 73-195 25-139 (265)
20 TIGR02873 spore_ylxY probable 88.9 4.4 9.5E-05 44.4 12.0 100 79-191 101-202 (268)
21 PRK14582 pgaB outer membrane N 85.5 23 0.00051 43.7 16.7 151 114-319 168-347 (671)
22 PRK14581 hmsF outer membrane N 82.9 6.5 0.00014 48.4 10.4 81 113-196 167-275 (672)
23 PF07481 DUF1521: Domain of Un 77.7 26 0.00056 34.7 10.4 96 599-711 7-103 (171)
24 PRK15394 4-deoxy-4-formamido-L 66.8 2.2E+02 0.0047 31.8 16.9 80 114-197 92-175 (296)
25 PF08672 APC2: Anaphase promot 61.9 9.2 0.0002 31.7 3.2 23 110-132 36-58 (60)
26 PHA03393 odv-e66 occlusion-der 43.0 46 0.00099 40.9 6.2 110 53-183 54-174 (682)
27 PF12395 DUF3658: Protein of u 34.9 62 0.0013 30.4 4.6 69 41-136 40-108 (111)
28 PHA02097 hypothetical protein 34.7 35 0.00075 26.9 2.3 32 899-930 4-35 (59)
29 TIGR03593 yidC_nterm membrane 33.4 3.6E+02 0.0077 30.9 11.6 29 599-627 73-101 (366)
30 TIGR03826 YvyF flagellar opero 29.5 43 0.00092 32.7 2.6 51 73-130 27-77 (137)
31 COG0726 CDA1 Predicted xylanas 29.1 4.5E+02 0.0097 27.7 11.0 115 52-190 65-181 (267)
32 PRK10148 hypothetical protein; 27.9 22 0.00047 35.2 0.3 17 164-180 123-139 (147)
33 PF14849 YidC_periplas: YidC p 27.9 3.5E+02 0.0076 29.2 9.9 25 602-626 2-26 (270)
34 PF10074 DUF2285: Uncharacteri 23.6 14 0.00031 34.3 -1.8 27 103-132 75-101 (106)
35 PF13289 SIR2_2: SIR2-like dom 21.8 4.1E+02 0.009 25.2 8.1 83 93-190 59-141 (143)
36 PF02929 Bgal_small_N: Beta ga 20.6 1.1E+03 0.024 25.7 12.5 39 604-644 2-41 (276)
37 PF06044 DRP: Dam-replacing fa 20.4 1.7E+02 0.0037 31.3 5.1 59 74-132 185-250 (254)
38 PF03755 YicC_N: YicC-like fam 20.2 2.4E+02 0.0052 28.2 6.1 61 103-163 39-101 (159)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-217 Score=1827.23 Aligned_cols=895 Identities=52% Similarity=0.865 Sum_probs=811.6
Q ss_pred cchhhHHHHHHHHHHHhhccccceeeEecCCCCCCCCceEEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHH
Q 002064 2 MTLKGLLLYYVIAFIAITSCVQAKYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSV 81 (973)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~v 81 (973)
|.|...+++.++++++ +.... .++.|++|+...+++++||||||||+|+|||||+||||+|++|.||++.|++|||+|
T Consensus 1 ~~l~~~~~~l~~l~ll-i~~~~-~~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSV 78 (996)
T KOG1959|consen 1 MALNKFLLFLCLLLLL-ISLVE-SRAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSV 78 (996)
T ss_pred CCcccchHHHHHHHHH-HHHHh-HhhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHH
Confidence 4555555555533333 33322 555599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhC
Q 002064 82 IPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFG 161 (973)
Q Consensus 82 i~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG 161 (973)
|++|.+||+|||+++|++||.+||.+|++++|+.||+||++||||||||||||||||++||.++|+||++||+||.++||
T Consensus 79 V~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG 158 (996)
T KOG1959|consen 79 VEELLKDPNRRFIYVETAFFARWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFG 158 (996)
T ss_pred HHHHhcCCccceehhhHHHHHHHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCcceeecCCCCCChhhHHHHhhhcCCcEEEEeccchhhhhhhccCCcceEEEecCCCCCCCceeEEeecCCCCCCC
Q 002064 162 --VTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPP 239 (973)
Q Consensus 162 --~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~~Y~~p 239 (973)
.+|++||||||||||+.||+|| |+|||++++|+||||+||+.|..++.|||+|+|++++++.++|||++||+||++|
T Consensus 159 ~cgrPrvgWqIDPFGHSreqAslf-AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P 237 (996)
T KOG1959|consen 159 ECGRPRVGWQIDPFGHSREQASLF-AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPP 237 (996)
T ss_pred ccCCcceeeeeCCCCcchHHHHHH-HHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCC
Confidence 8999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCccccCcccccccHHHHHHHHHHHHHHhccccCCCeEEEeccCCccccchHHHHHHHHHHHHHHhcC-
Q 002064 240 PGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD- 318 (973)
Q Consensus 240 ~~~f~f~~~~~~~p~~d~~~i~~~nv~~r~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~kli~~~N~~- 318 (973)
+|||||.+|.+.|++|++.+.+|||++|++.|++.++.++.+|+|||||+|||+||+|.+|..||+||||||+|+|+.
T Consensus 238 -~gfc~dv~c~d~Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~q 316 (996)
T KOG1959|consen 238 -PGFCFDVLCGDDPIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQ 316 (996)
T ss_pred -CCceeccccCCCCCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred --C-CeEEEEcChhhHHHHHHhcCCCCCCcCCCCccccccCCCcccceeechhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002064 319 --G-RVNALYSTPSIYTDAKYASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRSE 395 (973)
Q Consensus 319 --~-~~~i~~sT~~~Yf~al~~~~~~~p~~~gDffpy~~~~~~yWtGyyTSRp~~K~~~R~~e~~L~~ae~l~~l~~~~~ 395 (973)
+ .+++.||||+||++++++.+..||+++.|||||++++|+||||||||||.+|++.|+++++|++|+||++|+++..
T Consensus 317 a~gs~vnv~YSTpscYl~alh~~~~Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~ 396 (996)
T KOG1959|consen 317 ADGSKVNVFYSTPSCYLNALHAANQTWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSS 396 (996)
T ss_pred cCCceEEEEEcChHHHHHHHHHhcCcccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 4 7999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred --CCCchHHHHHHHHHhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccc
Q 002064 396 --TGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLN 473 (973)
Q Consensus 396 --~~~~~~~lw~~l~l~QhHDaItGTs~~~V~~Dy~~rL~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln 473 (973)
..+.++.|+++|++.|||||||||+|++|.+||.++|..|+..|+.+++.+|+.|.... ..+|++|.+||
T Consensus 397 ~~~~~dl~~Lream~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lN 468 (996)
T KOG1959|consen 397 TEQGPDLDYLREAMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLN 468 (996)
T ss_pred cccCccHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------Cccchhhhhhc
Confidence 56789999999999999999999999999999999999999999999999999998653 34799999999
Q ss_pred cccCCCcccccCCCCeEEEEEEcCCCceEEEEEEEEEecCcEEEEecCCCeEEEEEeCCCccccchhhhhhhhccCCCCC
Q 002064 474 ISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPM 553 (973)
Q Consensus 474 ~s~c~~~~~~~~~~~~~~vvvfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~ 553 (973)
+|+||.+++ .++++.|++||||+|.++++|+|||..+++.|.|+.|++|++|++|.......+. ...
T Consensus 469 iS~C~~t~~---~~~~~~v~~YNpLa~~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~ 535 (996)
T KOG1959|consen 469 ISECAFTKD---GADNFIVTLYNPLAHTVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRN 535 (996)
T ss_pred cccCCCCcC---CcCcEEEEEEcCCcceeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccc
Confidence 999999973 3678999999999999999999999999999999999999999999875432221 122
Q ss_pred CCCcEEEEEEeecCCCceEEEEEEecCCCCCccccccccccccCCCCceEEecceEEEEEECCCCCeEEEEecCCcceEE
Q 002064 554 VPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES 633 (973)
Q Consensus 554 ~~~~~~l~f~~~vPplG~~~y~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~ 633 (973)
....|+|+|.|.|||+|+++|.|+........+ .+..............|+|+++++.||..+|.+++|....+|.+..
T Consensus 536 ~~~~~eLvf~asvpplg~aty~i~k~~~~~~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~ 614 (996)
T KOG1959|consen 536 NDTKHELVFKASVPPLGIATYFIKKVASTERGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTEN 614 (996)
T ss_pred cCCCceEEEEEEecCccceEEEEeecCcccccc-cccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCccee
Confidence 345789999999999999999999655432210 0111111122334489999999999998889999999888999999
Q ss_pred eeeeeEEeeccCCCCCCCCCCCCceeEecCCCeeeecC-CceeEEEEEcccEEEEEEEEeceEEEEEEEeCCCCeEEEEE
Q 002064 634 VEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSE-GQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEF 712 (973)
Q Consensus 634 ~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~~~~~~-~~~~i~v~~G~l~~~v~~~~~~~i~~~vrL~~~~~~ie~e~ 712 (973)
+.|.|.+|.+..|++ +.+.||||+|+| +..++++. ....++|+.||++.||++.++.|++|.+|||+|.+++|+||
T Consensus 615 V~Q~f~~Y~~~~g~n--~~q~SgAYiFRp-~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew 691 (996)
T KOG1959|consen 615 VDQEFGYYKGYRGDN--DKQASGAYIFRP-GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEW 691 (996)
T ss_pred eeeeeEEEEeecCCc--CCccCcceEecC-CCCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEE
Confidence 999999999988853 358999999999 54444443 35788999999999999999999999999999999999999
Q ss_pred EEccccccCCCCcEEEEEEEecCCCCCeEEEecCCCceeeccccCCCCCcccCCCccccceEeeceeEEEEeCCceeEEE
Q 002064 713 IVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLL 792 (973)
Q Consensus 713 ~v~~ip~~~~~~~Ev~~~f~t~i~~~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl 792 (973)
.|+|||++++.|||++.||.|+|++++.|||||||+||+||.+++|++|..+..+||+||||||++.|||+|++.+|+||
T Consensus 692 ~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYTDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL 771 (996)
T KOG1959|consen 692 LVGPIPIDDGIGKEVVTRFSTEISSNGVFYTDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVL 771 (996)
T ss_pred EecceecCCCccceEEEEeccccccCceEEecCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccceeeccCCEEEEEEeeccccCCCcccccccccccccccccCCeEEEeEEEEEeccCCCcc-cccccchhhhcCCc
Q 002064 793 VDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA-KWRRTFGQEIYSPP 871 (973)
Q Consensus 793 ~dr~~G~ssl~~G~iElmL~Rrl~~DD~rGvge~l~d~~~~~~~~~gl~~~~~~~l~~~~~~~~~-~~~r~~~~~l~~p~ 871 (973)
|||+|||+|++||+||||||||++.||+|||||+|||+.++ ..||+++|+|++.|+.....+ ..+|..++++..|.
T Consensus 772 ~DRAqGgsSl~dG~lElMLHRRl~~DD~~Gv~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~ 848 (996)
T KOG1959|consen 772 NDRAQGGSSLKDGQLELMLHRRLLNDDGRGVGEALNETVYG---HAGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPL 848 (996)
T ss_pred eecccCCccccCCeEEEEeeehhhcccccccchhccccccc---ccceEEeeeEEEEEecccccchhhhhhhhhhcccHH
Confidence 99999999999999999999999999999999999999886 279999999999999888775 77888899999999
Q ss_pred eeEeeccCCCcccCCccccccCCCCCCCCCcceEEEEeeecCCCcEEEEecchhchh
Q 002064 872 LLAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDDGKILLRLAHLYQVL 928 (973)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~~~llRl~h~~e~~ 928 (973)
+.+|++..+..+......+.+.+..+..||.+||||||++|+++.+||||||+||++
T Consensus 849 ~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP~~vhLlTLe~~~~~~vLlRleh~~e~g 905 (996)
T KOG1959|consen 849 WKFFSKPEGGEALNSLSIPGSAFSGSYDLPQSVHLLTLEEWSKDEVLLRLEHLYEVG 905 (996)
T ss_pred HHHhhcCCCccchhhcCCCccccccccCCCcceeeeecccCCCCceEeeehhhhhcc
Confidence 999998776555443332222333345899999999999999999999999999884
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=1.7e-175 Score=1613.52 Aligned_cols=840 Identities=27% Similarity=0.489 Sum_probs=716.6
Q ss_pred ccceeeEecCCCCCCCCceEEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhhH
Q 002064 22 VQAKYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFF 101 (973)
Q Consensus 22 ~~~~~~~y~~~~~~~~~~~~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~f 101 (973)
++|=.|.|+..++. +++++||||||||||+|||||++|||. +.+++||++||+.|++||+|||+|+|++||
T Consensus 23 ~qg~~~~y~~~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl 93 (1050)
T PLN02701 23 KQGWRVKYRGDEWD-REKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYL 93 (1050)
T ss_pred ccccceeecccccC-CcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHH
Confidence 45667889988885 688999999999999999999999997 899999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHH
Q 002064 102 QRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAY 181 (973)
Q Consensus 102 ~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ 181 (973)
++||++++|++|++||+||++||||||||||||+|||++|||+|||||++||+|++++||+.|++||+|||||||++||+
T Consensus 94 ~~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~ 173 (1050)
T PLN02701 94 ERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAY 173 (1050)
T ss_pred HHHHHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEeccchhhhhhhccCCcceEEEecCCCCCCCceeEEeecCC-CCC-----CCCCCcc--cccCC----
Q 002064 182 LLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYE-----PPPGGFY--FEVND---- 249 (973)
Q Consensus 182 ll~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~-~Y~-----~p~~~f~--f~~~~---- 249 (973)
|| ++|||++++|+|++|++|..|+.++.+||+|+++++.++|++||||+||+ +|+ .||++|| ||..+
T Consensus 174 Ll-~~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~ 252 (1050)
T PLN02701 174 LL-RRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGF 252 (1050)
T ss_pred HH-HhCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCccccccccccccccc
Confidence 99 99999999999999999999999999999999988777799999999994 553 2235666 55442
Q ss_pred --CCCccccC-cccccccHHHHHHHHHHHHHHhccccCCCeEEEeccCCccc---cchHHHHHHHHHHHHHHhcCC--Ce
Q 002064 250 --KYPIIQDN-IKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKY---QYARTWFRQLDKFIHYVNMDG--RV 321 (973)
Q Consensus 250 --~~~p~~d~-~~i~~~nv~~r~~~~~~~~~~~~~~~~t~~il~~~G~Df~y---~~a~~~f~n~~kli~~~N~~~--~~ 321 (973)
..|||.++ +.++++|+++|++.|++++++++..|+++++|+|+|+||+| .+|..||+||++||+|+|+++ .+
T Consensus 253 ~~~~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~ 332 (1050)
T PLN02701 253 QYELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKA 332 (1050)
T ss_pred ccccCcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCc
Confidence 12454444 46889999999999999999999999999999999999999 578899999999999999774 48
Q ss_pred EEEEcChhhHHHHHHhcC----------------CCCCCcCCCCccccccCCCcccceeechhhHHHHHHHHHHHHHHHH
Q 002064 322 NALYSTPSIYTDAKYASN----------------ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAAR 385 (973)
Q Consensus 322 ~i~~sT~~~Yf~al~~~~----------------~~~p~~~gDffpy~~~~~~yWtGyyTSRp~~K~~~R~~e~~L~~ae 385 (973)
+++||||++||++++++. ..||+++||||||+++.++||||||||||.+|+++|++|++|++||
T Consensus 333 ~i~~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE 412 (1050)
T PLN02701 333 EVKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAE 412 (1050)
T ss_pred eEEECCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998753 5799999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--------cCCC---CCchHHHHHHHHHhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002064 386 QLEFYIG--------RSET---GHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSP 454 (973)
Q Consensus 386 ~l~~l~~--------~~~~---~~~~~~lw~~l~l~QhHDaItGTs~~~V~~Dy~~rL~~a~~~~~~~~~~~l~~L~~~~ 454 (973)
+|++++. ..++ .+.++.+||+|+++||||+|||||+++|++||..||.+++..++.+++.+++.|+...
T Consensus 413 ~L~sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~ 492 (1050)
T PLN02701 413 ILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIR 492 (1050)
T ss_pred HHHHHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999942 2244 2457899999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCCCccccccc-ccccccCCCccc-ccCCCCeEEEEEEcCCCceEEEEEEEEEecCcEEEEecCCCeEEEEEeCC
Q 002064 455 SDNGCGRSTTRFQQCP-LLNISYCPASEI-DFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPP 532 (973)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~ln~s~c~~~~~-~~~~~~~~~vvvfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~ 532 (973)
.. .+..+...|+.|. .+|.+.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|++|++|++|++|.
T Consensus 493 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~ 571 (1050)
T PLN02701 493 HE-KSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPE 571 (1050)
T ss_pred cc-ccccccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEecc
Confidence 21 1122234567774 458889987752 13345668999999999999999999999999999999999999999988
Q ss_pred CccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCccccccc--------------cccccCC
Q 002064 533 ADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSI--------------QTFESSD 598 (973)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~~~~~~s~~--------------~~~~~~~ 598 (973)
+..... ......|+|.|.++||||||++|.|............+++ .......
T Consensus 572 ~~~~~~-------------~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1050)
T PLN02701 572 WQHDGE-------------KLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLE 638 (1050)
T ss_pred cccccc-------------ccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccC
Confidence 642110 0123468999999999999999999875332110000000 0000112
Q ss_pred CCceEEecceEEEEEECCCCCeEEEEecCCcceEEeeeeeEEeeccCCCCCCCCCCCCceeEecCCCeeeecCCceeEEE
Q 002064 599 KSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTV 678 (973)
Q Consensus 599 ~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~~~~~~~~~~i~v 678 (973)
.+.++|||++++|+||+.+|.|++|+++++|++..+.++|.+|.+ +.||||+|+|++.+.........+.|
T Consensus 639 ~~~~~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s---------~~SGAYiFrP~~~~~p~~~~~~~~~v 709 (1050)
T PLN02701 639 GDTVEISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS---------QGSGAYLFKPDGEAQPIVQAGGLVVV 709 (1050)
T ss_pred CCcEEEecCeEEEEEcCCCCceeEEEecccCceecceeeeeeecC---------CCCcceEEcCCCCCcccCCCCceEEE
Confidence 345899999999999988999999999999999999999999964 35799999998875222222234567
Q ss_pred EEcccEEEEEEEE-----eceEEEEEEEeCC-----CCeEEEEEEEccccccCCCCcEEEEEEEecCCCCCeEEEecCCC
Q 002064 679 MRGPILDEVHQKI-----NEWIYQVTRLYKG-----KEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGR 748 (973)
Q Consensus 679 ~~G~l~~~v~~~~-----~~~i~~~vrL~~~-----~~~ie~e~~v~~ip~~~~~~~Ev~~~f~t~i~~~~~fyTDsnG~ 748 (973)
++||++++|++.+ +++++|++|||++ ...||+|++||+||. +..|||+++||.|+|+|+++||||||||
T Consensus 710 ~~Gplv~eV~~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~ 788 (1050)
T PLN02701 710 SEGPLVQEVHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGF 788 (1050)
T ss_pred EeCCEEEEEEEEeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccc
Confidence 8999999999976 4789999999998 678999999999997 6789999999999999999999999999
Q ss_pred ceeeccccCCCCCcccCCCccccceEeeceeEEEEe-CCceeEEEeccccceeeccCCEEEEEEeeccccCCCccccccc
Q 002064 749 DFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQD-VKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEAL 827 (973)
Q Consensus 749 ~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D-~~~~ltvl~dr~~G~ssl~~G~iElmL~Rrl~~DD~rGvge~l 827 (973)
||+||+ +|+ ++|++||||||+++|||+| ++.||||+|||++||||+++|+||||||||+++||+|||||||
T Consensus 789 qm~kR~-----~~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l 860 (1050)
T PLN02701 789 QMSRRE-----TYD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGV 860 (1050)
T ss_pred eeeeec-----ccc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCccccccc
Confidence 999996 343 6999999999999999999 6689999999999999999999999999999999999999999
Q ss_pred ccccccccccCCeEEEeEEEEEeccCCCccc------------ccccchhhhcCCceeEeeccCCCcccCCcc--ccccC
Q 002064 828 NETDCVLDECKGLTIQGKYYFRIDTIGDGAK------------WRRTFGQEIYSPPLLAFTEEDGDSWRNSHV--TTFSG 893 (973)
Q Consensus 828 ~d~~~~~~~~~gl~~~~~~~l~~~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~--~~~~~ 893 (973)
+|+ .++.++|+|++|+...... ..+..+..|++|+++|++....+. ..... .+|++
T Consensus 861 ~dn---------k~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 930 (1050)
T PLN02701 861 MDN---------RPMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQAT-SVENPQDTSFAP 930 (1050)
T ss_pred ccc---------ccccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCcccc-cccccccccccc
Confidence 998 4679999999997664210 123466789999999885432221 11223 67888
Q ss_pred CCCCCCCCcceEEEEeeecCCC
Q 002064 894 IDSSYSLPDNVAIITLQELDDG 915 (973)
Q Consensus 894 l~~~~~lp~nvhlltl~~~~~~ 915 (973)
|.+ +||||+||+|||+++..
T Consensus 931 l~~--~lpcD~hlv~lrt~~~~ 950 (1050)
T PLN02701 931 LAK--PLPCDLHIVNFKVPRPS 950 (1050)
T ss_pred ccC--CCCCcEEEEEeeccCCc
Confidence 864 89999999999987655
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-162 Score=1372.56 Aligned_cols=840 Identities=29% Similarity=0.484 Sum_probs=700.8
Q ss_pred cceeeEecCCCCCCCCceEEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhhHH
Q 002064 23 QAKYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQ 102 (973)
Q Consensus 23 ~~~~~~y~~~~~~~~~~~~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~f~ 102 (973)
+|-.|.|+...+....+++|+||||||+||||++||++||. .+.++||++++..|.++|++||+|+|++||.
T Consensus 146 qG~~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~ 217 (1129)
T KOG1958|consen 146 QGFKITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLE 217 (1129)
T ss_pred cCceeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHH
Confidence 55677899988887777999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHH
Q 002064 103 RWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYL 182 (973)
Q Consensus 103 ~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~l 182 (973)
+||+.++|++|++||+||++||||||+|||||||||.+||.+||+|+++||+||..++|++|+++|.|||||||++||+|
T Consensus 218 ~ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYL 297 (1129)
T KOG1958|consen 218 RWWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYL 297 (1129)
T ss_pred HhhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEEeccchhhhhhhccCCcceEEEecCCCCCCCceeEEeecCC-CCCCC---------CCCcccccCCC--
Q 002064 183 LGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPP---------PGGFYFEVNDK-- 250 (973)
Q Consensus 183 l~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~-~Y~~p---------~~~f~f~~~~~-- 250 (973)
| +++||++++|+|+||..|+.++.+|++||+||+.|+..+.++||||+||+ +|+.| |++|||.+.++
T Consensus 298 L-~~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~ 376 (1129)
T KOG1958|consen 298 L-RRAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGG 376 (1129)
T ss_pred H-hhcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCC
Confidence 9 89999999999999999999999999999999999988899999999998 89766 36999998632
Q ss_pred -CCcc-ccCcccccccHHHHHHHHHHHHHHhccccCCCeEEEeccCCccccchHHH---HHHHHHHHHHHhcCC--CeEE
Q 002064 251 -YPII-QDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTW---FRQLDKFIHYVNMDG--RVNA 323 (973)
Q Consensus 251 -~~p~-~d~~~i~~~nv~~r~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~---f~n~~kli~~~N~~~--~~~i 323 (973)
.||| +.+..|++.||++||+.+++|++++++.|++|.+|+|.||||+|....+| |.|+.+|+++||+.+ .+++
T Consensus 377 ~~Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~a 456 (1129)
T KOG1958|consen 377 CECPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQA 456 (1129)
T ss_pred cCCCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceee
Confidence 3455 56668999999999999999999999999999999999999999987776 999999999999875 6889
Q ss_pred EEcChhhHHHHHHhc-------CCCCCCcCCCCccccccCCCcccceeechhhHHHHHHHHHHHHHHHHHHHHhhc----
Q 002064 324 LYSTPSIYTDAKYAS-------NESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG---- 392 (973)
Q Consensus 324 ~~sT~~~Yf~al~~~-------~~~~p~~~gDffpy~~~~~~yWtGyyTSRp~~K~~~R~~e~~L~~ae~l~~l~~---- 392 (973)
+|+|++|||++|++. ...+|+++||||+|||+.++||||||||||++|++.|.+|++||+||++++|+.
T Consensus 457 qFGTlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~ 536 (1129)
T KOG1958|consen 457 QFGTLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAH 536 (1129)
T ss_pred ecCCHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999875 134799999999999999999999999999999999999999999999998642
Q ss_pred ---c--CCCC---CchHHHHHHHHHhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 002064 393 ---R--SETG---HNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTT 464 (973)
Q Consensus 393 ---~--~~~~---~~~~~lw~~l~l~QhHDaItGTs~~~V~~Dy~~rL~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 464 (973)
. ..+. ..+.+|||+|+++|||||||||||++|+.||..||..++..++.++.+++..|+..........+..
T Consensus 537 r~~~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~ 616 (1129)
T KOG1958|consen 537 RVGLAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSH 616 (1129)
T ss_pred HhhhhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCC
Confidence 1 1122 2467899999999999999999999999999999999999999999999999998654222111111
Q ss_pred cccccccc--ccccCCC-cccccCCCCeEEEEEEcCCCceEEEEEEEEEecCcEEEEecCCCeEEEEEeCCCccccchhh
Q 002064 465 RFQQCPLL--NISYCPA-SEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRD 541 (973)
Q Consensus 465 ~~~~~~~l--n~s~c~~-~~~~~~~~~~~~vvvfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~ 541 (973)
.+-+-... +.+.-|. +-..+ ++.+..|++||||.+.|.++|+|.|+.+.|.|.+..|.+|++||.|+|..+.+.
T Consensus 617 ~~~emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk-- 693 (1129)
T KOG1958|consen 617 SFIEMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK-- 693 (1129)
T ss_pred CceehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc--
Confidence 11000000 0011111 00012 233468999999999999999999999999999999999999999999632110
Q ss_pred hhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCcccccc---ccc-----cc--cCCCCceEEecceEEE
Q 002064 542 YYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSS---IQT-----FE--SSDKSTVEVGQGNLKL 611 (973)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~~~~~~s~---~~~-----~~--~~~~~~~~ieN~~~~v 611 (973)
......|+|+|.+.|||||..+|++..+.........++ +.. .. .......+++|++..+
T Consensus 694 ----------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l 763 (1129)
T KOG1958|consen 694 ----------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFEL 763 (1129)
T ss_pred ----------eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeE
Confidence 112347999999999999999999987633211111100 000 00 1112235899999999
Q ss_pred EEECCCCCeEEEEecCCcceEEeeeeeEEeeccCCCCCCCCCCCCceeEecCCCe-eeecCCceeEEEEEcccEEEEEEE
Q 002064 612 IFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIKSEGQVPLTVMRGPILDEVHQK 690 (973)
Q Consensus 612 ~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~-~~~~~~~~~i~v~~G~l~~~v~~~ 690 (973)
.|++.+|+|+++..+.+++...+...|..|.+..+ +..||||+|.|+|++ ++.......|.+ +|+|+++|.+.
T Consensus 764 ~fd~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~-----~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~ 837 (1129)
T KOG1958|consen 764 RFDPETGTIKSINSLSDNKHFESQVSFSNYGERIS-----GDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQF 837 (1129)
T ss_pred EeccccchhhhhhhcccCCCcccceeecccccccc-----CCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccc
Confidence 99999999999988888888887778888865443 567999999999985 533333345666 99999999987
Q ss_pred Eec---eEEEEEEEeCCCCeEEEEEEEccccccCCCCcEEEEEEEecCCCCCeEEEecCCCceeeccccCCCCCcccCCC
Q 002064 691 INE---WIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNE 767 (973)
Q Consensus 691 ~~~---~i~~~vrL~~~~~~ie~e~~v~~ip~~~~~~~Ev~~~f~t~i~~~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~ 767 (973)
... ...|.+|+|.|. .+|+++.|+ +.+..+.|++|||.|++++++.||||+||+||+||.+. .+.
T Consensus 838 ~~~v~~~~~~~~~~~~G~-~vei~~~vd---i~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~Kl 905 (1129)
T KOG1958|consen 838 LKNVLHRLSQNVRGYSGE-EVEISNSVD---IRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKL 905 (1129)
T ss_pred cchHHHhchhheeccCCc-ceeeeceee---cccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccC
Confidence 642 233788999987 677777765 44567999999999999999999999999999999765 479
Q ss_pred ccccceEeeceeEEEEeCCceeEEEeccccceeeccCCEEEEEEeeccccCCCcccccccccccccccccCCeEEEeEEE
Q 002064 768 PVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYY 847 (973)
Q Consensus 768 pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ssl~~G~iElmL~Rrl~~DD~rGvge~l~d~~~~~~~~~gl~~~~~~~ 847 (973)
|+++|||||++++||+|.+.+|++++.+++|++|+.+|+||+|++||+.+||+||+|+|+.|+ .++..+|+
T Consensus 906 PlQaNyYPmpt~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DN---------k~t~~~fr 976 (1129)
T KOG1958|consen 906 PLQANYYPMPTAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDN---------KPTDMKFR 976 (1129)
T ss_pred cccceeecccceeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCcccccccccc---------chhhheee
Confidence 999999999999999999999999999999999999999999999999999999999999987 46788999
Q ss_pred EEeccCCCccc------------ccccchhhhcCCceeEeeccCCCcccCCccccccCCCCCCCCCcceEEEEeeecCCC
Q 002064 848 FRIDTIGDGAK------------WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDDG 915 (973)
Q Consensus 848 l~~~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~ 915 (973)
|++++.+..+. ..+...+.+++|+..|+...+. +... ...+.++.. +|||++||+||++++++
T Consensus 977 lv~e~~~s~~~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~pk--~i~~-~g~~~~~~~--~lpcDl~lvt~rtl~~~ 1051 (1129)
T KOG1958|consen 977 LVLESLNSAQDPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEPK--KIED-QGIFEPLNL--SLPCDLHLVTFRTLESS 1051 (1129)
T ss_pred eeecccccccCchhcCCCCChhhhhhcccceecCCchhhcccCCC--Chhh-ccccccccC--CCccceeEEEeeeccCc
Confidence 99998765321 1233567889999988743321 2211 233455543 89999999999999865
Q ss_pred c
Q 002064 916 K 916 (973)
Q Consensus 916 ~ 916 (973)
.
T Consensus 1052 ~ 1052 (1129)
T KOG1958|consen 1052 K 1052 (1129)
T ss_pred c
Confidence 4
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=1.4e-105 Score=999.68 Aligned_cols=771 Identities=15% Similarity=0.182 Sum_probs=590.3
Q ss_pred ceEEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEE-echhhHHHHHHhcCHHHHHHHH
Q 002064 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIY-VEQAFFQRWWDEQSEAMQHEVK 117 (973)
Q Consensus 39 ~~~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~-~e~~~f~~Ww~~~~p~~~~~vk 117 (973)
+++||+|||||||+|||||++++.. ++.+++++|++.|+++|+++|.+ +++..+.+||.+..|+++++||
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ik 73 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKERVK 73 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHHHH
Confidence 4789999999999999999999874 88899999999999999999764 3344444555589999999999
Q ss_pred HHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCCcEEEEecc
Q 002064 118 QLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRI 197 (973)
Q Consensus 118 ~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~Ri 197 (973)
+||++||| ++||||||+||+++||||+||||++||+|+ ++||..|++||+|||||||++||||| ++|||+++++||+
T Consensus 74 ~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~~~wr~ 150 (875)
T PRK09819 74 KLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRTLFWRG 150 (875)
T ss_pred HHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeEEEEec
Confidence 99999999 665555999999999999999999999998 79999999999999999999999999 9999999999997
Q ss_pred chhhhhhhccCCcceEEEecCCCCCCCceeEEeecCCCCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHHHH
Q 002064 198 DYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAI 277 (973)
Q Consensus 198 ~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~~Y~~p~~~f~f~~~~~~~p~~d~~~i~~~nv~~r~~~~~~~~~ 277 (973)
..+. ......+|+|+|+| ||+||||++|.+|+.+ ..+. ....+++++++.+++.++
T Consensus 151 ~~~~----~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g-~~~~---------------~~~~~~~~~~~~~~~~~~ 206 (875)
T PRK09819 151 VSDR----HGTDKTEFLWQSDD----GSEVLAQQLPLGYAIG-KYLP---------------EDEEELKKRLDEYFGVLE 206 (875)
T ss_pred cccc----ccCCCceEEEECCC----CCeEEEEECccccccC-CCCC---------------cCHHHHHHHHHHHHHHHh
Confidence 5321 11346789999999 9999999999999875 2110 122577788888877776
Q ss_pred HhccccCCCeEEEeccCCccccchHHHHHHHHHHHHHHhcC-CCeEEEEcChhhHHHHHHhcCCCCCCcCCCCc-ccccc
Q 002064 278 SQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYSTPSIYTDAKYASNESWPLKTDDFF-PYADR 355 (973)
Q Consensus 278 ~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~kli~~~N~~-~~~~i~~sT~~~Yf~al~~~~~~~p~~~gDff-py~~~ 355 (973)
+++ .++++|+|+|+|+.+.. ++|.++|+.+|+. +.+++++||+++||++++++...||+++|||+ |+..+
T Consensus 207 ~~~---~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y~~ 278 (875)
T PRK09819 207 KKS---STKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKYMR 278 (875)
T ss_pred hcC---CCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcccc
Confidence 654 78999999999997765 5788888888865 46899999999999999988788999999998 33333
Q ss_pred CCCcccceeechhhHHHHHHHHHHHHHH-HHHHHHhh---ccCCCCCchHHHHHHHHHhcccccccCCcchhhhHHHHHH
Q 002064 356 AHAYWTGYFSSRPALKRYVKVMSGYYLA-ARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKR 431 (973)
Q Consensus 356 ~~~yWtGyyTSRp~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~lw~~l~l~QhHDaItGTs~~~V~~Dy~~r 431 (973)
.| +|+||||+.+|+++|++|.+|+. +|.|.+++ |..|+...++++|+.|+++||||+||||++++|++|+..|
T Consensus 279 ~H---rG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r 355 (875)
T PRK09819 279 VH---RSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVAR 355 (875)
T ss_pred cc---CCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHH
Confidence 33 59999999999999999999974 89888875 4567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEEEEEEEEEe
Q 002064 432 LAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVA 511 (973)
Q Consensus 432 L~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfNpl~~~r~~~V~i~v~ 511 (973)
+.++.+.++++++.+++.|+.... .++...++||||++|+|+++|++++.
T Consensus 356 ~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~v~i~~~ 405 (875)
T PRK09819 356 YKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEVINTTVY 405 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeEEEEEEE
Confidence 999999999999999999886431 13345789999999999999998774
Q ss_pred --cCcEEEEecCCCeEEEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEe-ecCCCceEEEEEEecCCCCCcccc
Q 002064 512 --NGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPV-SVPPLGFSTYTISSVKRGGGHSIR 588 (973)
Q Consensus 512 --~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vPplG~~~y~i~~~~~~~~~~~~ 588 (973)
.+++.+.|.+|++|++|+...................+.. ....+.+.|.+ +||||||++|.+...+......
T Consensus 406 ~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~~-- 481 (875)
T PRK09819 406 LPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIVHYGNYD--PFMEFDIQINVQILPAMGYRTLYIELNEEGNVIE-- 481 (875)
T ss_pred eccCCEEEECCCCCEeeEEEeeccccccchhhcceeccCCCC--ceEEEEEEEEECCCCCcccEEEEEEeCCcccccc--
Confidence 5678999999999999998554322111110000000000 00145788874 8999999999987643311100
Q ss_pred ccccccccCCCCceEEecceEEEEEECCCCCeEEEEecCCcceEEeeeeeEEeeccCCCCCCCCCCCCceeEecCCCe-e
Q 002064 589 SSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-F 667 (973)
Q Consensus 589 s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~-~ 667 (973)
........|||++|+|+|+ ++|.| +|+||++|+++. ++..+. +. ++.++||+|.|.... .
T Consensus 482 -------~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~-d~------~d~gD~yd~~p~~~d~~ 542 (875)
T PRK09819 482 -------PKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIE-EN------GDDGDEYDYSPPREDWV 542 (875)
T ss_pred -------ccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEE-ec------CcCCCCcccCCCCCCCE
Confidence 1223457899999999999 78999 599999999874 333443 22 335679999986543 3
Q ss_pred eecCC-ceeEEEEEcccEEEEEEEE------------------eceEEEEEEEeCCCCeEEEEEEEccccccCCCCcEEE
Q 002064 668 IKSEG-QVPLTVMRGPILDEVHQKI------------------NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVV 728 (973)
Q Consensus 668 ~~~~~-~~~i~v~~G~l~~~v~~~~------------------~~~i~~~vrL~~~~~~ie~e~~v~~ip~~~~~~~Ev~ 728 (973)
+.... ...+.+++||+.+++++++ .+.++++++|++++++|+|+++|++. ..+|.++
T Consensus 543 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lr 618 (875)
T PRK09819 543 ITSAEAVPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLR 618 (875)
T ss_pred EeccCCcceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEE
Confidence 32222 3467788899988877664 25788999999999999999999875 6799999
Q ss_pred EEEEecCCCCCeEEEecCCCceeeccccC--CCCCcccCCCccccceEeeceeEEEEeCCceeEEEeccccceeeccC--
Q 002064 729 THITSTLETNKTFYTDSNGRDFIKRIRDY--RTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVD-- 804 (973)
Q Consensus 729 ~~f~t~i~~~~~fyTDsnG~~~ikR~~~~--r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ssl~~-- 804 (973)
+.|+++|.++..+| | .+||+++|+++. .++|+....+...-+.||+++|+++.|.+.+++|+||+++|.....+
T Consensus 619 v~fp~~i~~~~~~~-d-~~fG~i~Rp~~~~~~~~W~~~~~~e~p~~~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~~~ 696 (875)
T PRK09819 619 VLFPTEIASKFSLA-D-QQFGSITRPVNDPAMDVWEQEGWQEAPISIEPMQSFVALHDERHGVAVFTEGVREYEIIGENY 696 (875)
T ss_pred EEccCCCCCCceEc-C-CCceEEECCCcCccccccccccceeCCCCChhhhceEEEecCCceEEEECCCcceEEEecCCC
Confidence 99999999866555 5 999999999754 46887653332233489999999999999999999999999875543
Q ss_pred CEEEEEEeeccc--------cCCCcccccccccccccccccCCeEEEeEEEEEeccCCCcc--cccccchhhhcCCceeE
Q 002064 805 GEVELMLHRRLL--------LDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA--KWRRTFGQEIYSPPLLA 874 (973)
Q Consensus 805 G~iElmL~Rrl~--------~DD~rGvge~l~d~~~~~~~~~gl~~~~~~~l~~~~~~~~~--~~~r~~~~~l~~p~~~~ 874 (973)
++|.|+|.|+.. +-.+|..|..+-+.. .+|.| .++|.+.|.+..+.. ....+.+++++.|+.++
T Consensus 697 ~~i~LTLlRs~g~lgk~~l~~rpgr~sG~~~ptP~---aq~~G---~h~f~y~l~ph~g~~~~~~~~~~a~~~n~p~~~~ 770 (875)
T PRK09819 697 DTIALTLFRGVGLLGKEDLLYRPGRPSGIKIPTPD---SQLLG---ELSFRFSLTSYEGTFDEAGVAQQAKEYLTPVQCY 770 (875)
T ss_pred CeEEEEeecccCccCCCccccCCCcccCCccCCCh---HHhcC---ceEEEEEEEEccCCcchHHHHHHHHHhccCccee
Confidence 489999999963 344565554332221 12334 345666665554332 12245788999999866
Q ss_pred eeccC----CCcccCCccccccCCCCCCCCCcceEEEEeeecCC-CcEEEEecch
Q 002064 875 FTEED----GDSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDD-GKILLRLAHL 924 (973)
Q Consensus 875 ~~~~~----~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~-~~~llRl~h~ 924 (973)
-.... ...-......++|.+. -.+++|.+-++|+.+| +.++|||.|-
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~i~~sa~K~aed~~~~ilRlyn~ 822 (875)
T PRK09819 771 NKIPFLNMRLNDEEFTLPESYSLLK---MPPDGAVLSAVKKAEDRDGLILRFFNP 822 (875)
T ss_pred ecccccccccCcccCCCCcccccee---eCCCCEEEEEEEEeccCCCEEEEEeCC
Confidence 32100 0000011122233331 1345899999999886 4699999765
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-77 Score=658.73 Aligned_cols=704 Identities=18% Similarity=0.215 Sum_probs=549.9
Q ss_pred CCceEEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHHHHHHH
Q 002064 37 PGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEV 116 (973)
Q Consensus 37 ~~~~~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~~~~v 116 (973)
...-+||.|+|.|+|.+|||+|.|..+ +..+...+.+..|+.+|+++|+.++..- .+|.++.+|+.++++
T Consensus 278 es~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAqQ-~~WlkedhP~~f~kl 347 (1078)
T KOG4342|consen 278 ESQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQQ-LEWLKEDHPGLFSKL 347 (1078)
T ss_pred ccccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHHH-HHHHhhhChhHHHHH
Confidence 346799999999999999999999984 8888899999999999999999986544 489999999999999
Q ss_pred HHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCCcEEEEec
Q 002064 117 KQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR 196 (973)
Q Consensus 117 k~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~R 196 (973)
++.+..||+-.|||.||++|.++|+|||||||++.|++|+.++||.+.+.-|+||+||+|+|+|||. +.+||+.++.++
T Consensus 348 ~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFLTQK 426 (1078)
T KOG4342|consen 348 QEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFLTQK 426 (1078)
T ss_pred HHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cchhhhhhhccCCcceEEEecCCCCCCCceeEEeecCC-CCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHH
Q 002064 197 IDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAA 275 (973)
Q Consensus 197 i~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~-~Y~~p~~~f~f~~~~~~~p~~d~~~i~~~nv~~r~~~~~~~ 275 (973)
+.|+..+.+++.. |.|.|.| ||+|++||-|. .|... -++ .+.+..
T Consensus 427 LSWNniNSFPhsT---FnW~glD----GSqvl~HmPPgntYtad-----------------------~~v----~dVL~t 472 (1078)
T KOG4342|consen 427 LSWNNINSFPHST---FNWEGLD----GSQVLVHMPPGNTYTAD-----------------------GSV----EDVLKT 472 (1078)
T ss_pred ccccccCcCCccc---eeeeecc----CceEEEecCCCCccccc-----------------------CcH----HHHHHH
Confidence 9999999998876 9999999 99999998775 56543 122 233444
Q ss_pred HHHhccccCCCeEEEeccCCccccchHHHHHHHHHHHH---HHhcCC-CeEEEEc-ChhhHHHHHHhc---CCCCCCcCC
Q 002064 276 AISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIH---YVNMDG-RVNALYS-TPSIYTDAKYAS---NESWPLKTD 347 (973)
Q Consensus 276 ~~~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~kli~---~~N~~~-~~~i~~s-T~~~Yf~al~~~---~~~~p~~~g 347 (973)
+.+....-+.++-|+.+|-....+.+.+ +.++||.+ .-|.++ -++++.| |+++||+++.+. +..+|++.|
T Consensus 473 v~qnk~~~~~~~gl~lfG~GDGGGGPT~--eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~G 550 (1078)
T KOG4342|consen 473 VAQNKDKGRANHGLFLFGFGDGGGGPTQ--EMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVG 550 (1078)
T ss_pred HHhcCCccccCcceEEEEecCCCCCCcH--HHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccch
Confidence 4444444556666777764333332211 44454433 445555 6899999 999999999775 456999999
Q ss_pred C-CccccccCCCcccceeechhhHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHhcccccccCCcc
Q 002064 348 D-FFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR-----SETGHNTDSLADALAIAQHHDAVTGTEK 421 (973)
Q Consensus 348 D-ffpy~~~~~~yWtGyyTSRp~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~lw~~l~l~QhHDaItGTs~ 421 (973)
| ||++|+ |.|||++.+|++.|.+|..|+.+|.+.+++.. .||...++.||+.++++|+||.+||+++
T Consensus 551 ELyfEfHr-------GTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCI 623 (1078)
T KOG4342|consen 551 ELYFEFHR-------GTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCI 623 (1078)
T ss_pred heEEEEec-------CceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHH
Confidence 9 568887 99999999999999999999999999998652 3567789999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCce
Q 002064 422 QHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWK 501 (973)
Q Consensus 422 ~~V~~Dy~~rL~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfNpl~~~ 501 (973)
+.|++|.+-.+.+....++.++..+++.|.... .+...+++.|+|+|.
T Consensus 624 eMVykeA~p~~~~v~k~~~tLl~~a~~~L~as~--------------------------------s~ke~L~~~nTLpW~ 671 (1078)
T KOG4342|consen 624 EMVYKEAMPHYEDVRKHGNTLLSAAAAALCASE--------------------------------SGKEGLLIVNTLPWK 671 (1078)
T ss_pred HHHHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC--------------------------------CCccceEEEeccccc
Confidence 999999999999999999999999999885432 112357899999999
Q ss_pred EEEEEEEEEecCcEEEEecCCCeEEEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCC
Q 002064 502 REDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKR 581 (973)
Q Consensus 502 r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~ 581 (973)
|.+++.++-+...+. .+ ..++|.+|++...
T Consensus 672 ~~~v~~~~kp~k~~~-----------------------------------------~e---~c~~~g~~ta~vt------ 701 (1078)
T KOG4342|consen 672 RIEVMALPKPGKAHS-----------------------------------------LE---LCTVPGMGTAPVT------ 701 (1078)
T ss_pred eeeeecccCCCCcee-----------------------------------------EE---EeccCCccccCCC------
Confidence 999887654321110 01 1356666654321
Q ss_pred CCCccccccccccccCCCCceEEecceEEEEEECCCCCeEEEEecCCcceEE---------eeeeeEEeeccCCCCCCCC
Q 002064 582 GGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES---------VEQSYSFYPAYNGTNDKAP 652 (973)
Q Consensus 582 ~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~---------~~~~f~~Y~~~~G~~~~~~ 652 (973)
... +++.. -..++.++|.|+.+||+++ .+|.|+|++|...|+++. -.++|..|.. .+
T Consensus 702 -~~~---~p~~~--yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD-------~P 767 (1078)
T KOG4342|consen 702 -PPT---SPVFV--YQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDD-------VP 767 (1078)
T ss_pred -CCC---CceeE--EecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecC-------Cc
Confidence 000 01111 1246778999999999999 579999999998888865 1256777642 25
Q ss_pred CCCCceeEecCCCeeeec-CCceeEEE-EEcccEEEEEEEE----eceEEEEEEEeCCC-----CeEEEEEEEccccccC
Q 002064 653 QNAGAYIFRPNGTFFIKS-EGQVPLTV-MRGPILDEVHQKI----NEWIYQVTRLYKGK-----EHVEVEFIVGPIPVDD 721 (973)
Q Consensus 653 ~~sGAYiF~P~~~~~~~~-~~~~~i~v-~~G~l~~~v~~~~----~~~i~~~vrL~~~~-----~~ie~e~~v~~ip~~~ 721 (973)
-.+.||+-.-..-..+++ .....+.| .+|+++..+.+.+ ++.++++|.|-.+. +.|+|.++|+ |.
T Consensus 768 L~WqAWDte~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---Wh- 843 (1078)
T KOG4342|consen 768 LYWQAWDTEDYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---WH- 843 (1078)
T ss_pred cchhhhhhhhhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---eh-
Confidence 566677532111112222 33334666 5899988776655 57889999987665 7899999987 33
Q ss_pred CCCcEEEEEEEecCCCCCeEEEecCCCceeeccccCCCCCcccCCCccccceEeeceeEEEEeCCceeEEEeccccceee
Q 002064 722 GLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSS 801 (973)
Q Consensus 722 ~~~~Ev~~~f~t~i~~~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ss 801 (973)
+..|-+.|.|+.+|.|.-+.|. .+|++.||+++|+++|+....|.+.+ .+++..|-..|++|||||+||. |
T Consensus 844 e~~KFLKVEFPv~irs~fAsYE--tQFGitkRPTHYNTSWDvAkFEVchh------kfaDySe~~~Gvs~LNDCKYGf-S 914 (1078)
T KOG4342|consen 844 EAHKFLKVEFPVRIRSSFASYE--TQFGITKRPTHYNTSWDVAKFEVCHH------KFADYSEHGFGVSLLNDCKYGF-S 914 (1078)
T ss_pred hcCceEEeeccccccccchhhh--hhcccccCCccccccchhhHhHHHHh------hhhhhhhcccceeeeccccccc-c
Confidence 6789999999999999777777 89999999999999999988877663 7999999999999999999997 5
Q ss_pred ccCCEEEEEEeeccccCCCcccccccccccccccccCCeEEEeEEEEEeccCCCccc-ccccchhhhcCCceeEeeccCC
Q 002064 802 IVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAK-WRRTFGQEIYSPPLLAFTEEDG 880 (973)
Q Consensus 802 l~~G~iElmL~Rrl~~DD~rGvge~l~d~~~~~~~~~gl~~~~~~~l~~~~~~~~~~-~~r~~~~~l~~p~~~~~~~~~~ 880 (973)
.+.+-|.|.|.|++-.+|.-. |.+ ++.+++.+-++..+-. ..-+.+.++++|.-+.....+.
T Consensus 915 thGnlmrLSLLRsPKaPDAhA------DmG-----------~Hei~YA~yPH~g~lds~tv~aAh~fN~~fkl~lpa~~~ 977 (1078)
T KOG4342|consen 915 THGNLMRLSLLRSPKAPDAHA------DMG-----------RHEITYALYPHKGSLDSGTVQAAHSFNFPFKLALPAPSP 977 (1078)
T ss_pred cccceeeehhhcCCCCCCccc------ccC-----------cceEEEEeccCCCCCchhHHHHHHhcCCceeeccCCCCC
Confidence 899999999999999999654 542 5667788888776532 2345778999998554433222
Q ss_pred CcccCCccccccCCCCCCCCCcceEEEEeeecCC----CcEEEEecchhchhhH
Q 002064 881 DSWRNSHVTTFSGIDSSYSLPDNVAIITLQELDD----GKILLRLAHLYQVLFF 930 (973)
Q Consensus 881 ~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~----~~~llRl~h~~e~~~~ 930 (973)
. ...+|..+. .+-.+||.|-++|..++ ..|+||+ ||..+.
T Consensus 978 a-----n~d~~dafs--vsgdpnViLs~iK~aE~~~~~~SivlRv---YEslGg 1021 (1078)
T KOG4342|consen 978 A-----NADSWDAFS--VSGDPNVILSTIKQAESSPQRRSIVLRV---YESLGG 1021 (1078)
T ss_pred C-----CCcccccee--ecCCchHHHHHhhhhccCcccceEEEEe---hhhcCC
Confidence 1 123344432 14557899999988765 4799999 887653
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=9.6e-60 Score=517.02 Aligned_cols=270 Identities=31% Similarity=0.507 Sum_probs=216.5
Q ss_pred EEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHHHHHHHHHHH
Q 002064 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (973)
Q Consensus 41 ~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV 120 (973)
+||+|||||||+||++|+++|. ..+.++|+++++.|+++|++||+++|+.++.+| .+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~-~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDY-LEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHHHH-HHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHHHH-HHhCCHHHHHHHHHH
Confidence 6999999999999999999995 699999999999999999999999988887555 466999999999999
Q ss_pred hCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCCcEEEEeccchh
Q 002064 121 GSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQ 200 (973)
Q Consensus 121 ~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~Ri~~~ 200 (973)
++||||+|||||||+||+++++|++||||++|++|++++||++|++||+||+||||+++|+|| +++||++++++|++++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhhccCCcceEEEecCCCCCCCceeEEeecCCCCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHHHHHhc
Q 002064 201 DRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQA 280 (973)
Q Consensus 201 ~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~~Y~~p~~~f~f~~~~~~~p~~d~~~i~~~nv~~r~~~~~~~~~~~~ 280 (973)
.+..++.++..+|+|+|+| |++||||++|.+|..+..+.. . ++++.+++++++.+
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~~--------------------~-~~~~~~~~~~~~~~ 204 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGSE--------------------F-EDADELLEQLRKLA 204 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTCC--------------------H-HHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCcc--------------------c-ccHHHHHHHHHHHH
Confidence 9998878889999999999 999999999998765301111 0 35678889999999
Q ss_pred cccCCCeEEEeccCCccccchHHHHHHHHHHHHHHh---c-CCCeEEEEcChhhHHHHHHhcCCCCCCc-CCCCcccc
Q 002064 281 NITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVN---M-DGRVNALYSTPSIYTDAKYASNESWPLK-TDDFFPYA 353 (973)
Q Consensus 281 ~~~~t~~il~~~G~Df~y~~a~~~f~n~~kli~~~N---~-~~~~~i~~sT~~~Yf~al~~~~~~~p~~-~gDffpy~ 353 (973)
..+.++++|+|+|+| ...+..++++++++| + ...+++++||+++||++++++ .+||++ +|||+||+
T Consensus 205 ~~~~~~~~l~~~G~d------~~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 205 KKYYTNNILIPYGDD------DDGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CCSSSSEEEEEEEEE------HHHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred HhcCCCceEEEeecC------CCCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 999999999999998 222344555555555 4 458999999999999999998 999999 99999995
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-49 Score=484.82 Aligned_cols=666 Identities=18% Similarity=0.205 Sum_probs=481.1
Q ss_pred EEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHHHHHHHHHHH
Q 002064 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (973)
Q Consensus 41 ~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV 120 (973)
+|+.+.|+|.|..|+|++++... .......+++..+...|.++|+...... +.|..+..|+..++ ++|
T Consensus 199 ~I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~s~~~~-y~~l~~d~p~l~~~--~~v 266 (943)
T COG0383 199 EIPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQSAAAL-YNWLKPDVPFLFSR--PAV 266 (943)
T ss_pred cccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhhhHHHH-HHHhcCccHHHhhc--ccc
Confidence 39999999999999999999984 7788888999999999999999965444 69999999999999 999
Q ss_pred hCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCCcEEEEeccchh
Q 002064 121 GSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQ 200 (973)
Q Consensus 121 ~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~Ri~~~ 200 (973)
+.|+|+.++|+||.+|.++++||+++||+.+|++|+.+.||...|+.|.||+||.|+++|||+ ..+|++.|+++++.|+
T Consensus 267 ~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~klawn 345 (943)
T COG0383 267 EFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKLAWN 345 (943)
T ss_pred cccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHH-Hhhcchhhhccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhhccCCcceEEEecCCCCCCCceeEEeecCCCCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHHHHHhc
Q 002064 201 DRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQA 280 (973)
Q Consensus 201 ~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~~Y~~p~~~f~f~~~~~~~p~~d~~~i~~~nv~~r~~~~~~~~~~~~ 280 (973)
+.+.++++. |.|++.+ |+++++|..+.+++.. . .+ + .. +++...
T Consensus 346 ~tn~~Ph~~---~~w~~~d----g~e~~~hds~~~~~~d-----------------~-----v~---~--~~--~~r~~~ 389 (943)
T COG0383 346 DTNRFPHDL---LRWRWKD----GTENLAHDSICGCSSD-----------------P-----VH---R--EM--EYRFEK 389 (943)
T ss_pred hccCCChhH---heeeccc----ccccceeecCCCCccc-----------------H-----HH---H--HH--Hhhhhh
Confidence 999999865 9999999 9999999866544221 0 00 0 00 111111
Q ss_pred cccCCCeEEEeccC-CccccchHHHHHHHHHHHHHHhcCCCeEEEEcChhhHHHH----HHhcCCCCCCcCCC-Cccccc
Q 002064 281 NITRTNHIMWTMGT-DFKYQYARTWFRQLDKFIHYVNMDGRVNALYSTPSIYTDA----KYASNESWPLKTDD-FFPYAD 354 (973)
Q Consensus 281 ~~~~t~~il~~~G~-Df~y~~a~~~f~n~~kli~~~N~~~~~~i~~sT~~~Yf~a----l~~~~~~~p~~~gD-ffpy~~ 354 (973)
.....|+.+|. |+..+.+.++-++.. -..+..+|.. +.......|++.|+ |+.+++
T Consensus 390 ---~~~~~~~~~g~gd~ggg~~~dm~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~E~hr 451 (943)
T COG0383 390 ---INQVGLYLYGYGDGGGGPSIDMLENPE---------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYLELHR 451 (943)
T ss_pred ---hccceeEEeeccCCCCCCCHHHHhccc---------------cccccceeeecceeeeeecccccccchhhhhhccC
Confidence 23345555554 333333222111111 1122233322 22234568999888 558887
Q ss_pred cCCCcccceeechhhHHHHHHHHHHHHHHHHHHHHhhc------cCCCCCchHHHHHHHHHhcccccccCCcchhhhH-H
Q 002064 355 RAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG------RSETGHNTDSLADALAIAQHHDAVTGTEKQHVAN-D 427 (973)
Q Consensus 355 ~~~~yWtGyyTSRp~~K~~~R~~e~~L~~ae~l~~l~~------~~~~~~~~~~lw~~l~l~QhHDaItGTs~~~V~~-D 427 (973)
|.|||....|.++|.+|..|+.+|.+.+++. ..++...++++|+.++++|+||.++|++...|+. +
T Consensus 452 -------g~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~ 524 (943)
T COG0383 452 -------GTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSYD 524 (943)
T ss_pred -------ceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechhh
Confidence 9999999999999999999999998887742 3466778999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCCeEEEEEEcCCCceEEEEEE
Q 002064 428 YAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIR 507 (973)
Q Consensus 428 y~~rL~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~vvvfNpl~~~r~~~V~ 507 (973)
....+......+..++..+++.|.+. ......++|++.|.+.
T Consensus 525 a~~~~~~~~~~~~~i~~~~~~~l~~~----------------------------------~~e~~~~~~~~~~~~~---- 566 (943)
T COG0383 525 ALPLLEVVQKGASKIAELALKVLSSQ----------------------------------CLENLFVKNTLSWNGI---- 566 (943)
T ss_pred HHHHHHhhhccchhhhhhhhhhhhhc----------------------------------cccceEEEeeccCCcc----
Confidence 88888888888888888888777332 1124679999999981
Q ss_pred EEEecCcEEEEecCCCeEEEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCccc
Q 002064 508 IPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSI 587 (973)
Q Consensus 508 i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~y~i~~~~~~~~~~~ 587 (973)
.+.|+|..++.++.+.+. ...++|++|...+.+++.....
T Consensus 567 ------~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~---- 606 (943)
T COG0383 567 ------SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP---- 606 (943)
T ss_pred ------eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc----
Confidence 455666555554433221 0136888999888874322210
Q ss_pred cccccccccCCCCceEEecceEEEEEECCCC-CeEEEEecCCcceEEeeeeeEEeeccCCCCCCCCCCCCceeEecCCCe
Q 002064 588 RSSIQTFESSDKSTVEVGQGNLKLIFSSDKS-KPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF 666 (973)
Q Consensus 588 ~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G-~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~ 666 (973)
.....+++..+..++ ++| .+..+.++ +..+.||.-.+....
T Consensus 607 ------------~~~~~~~~~~~~~~~-~~gn~~~~~~~~-------------------------~~~~~~w~i~~~~~~ 648 (943)
T COG0383 607 ------------ETVIEEKEWKRLIIN-DTGNQLALIEDE-------------------------PAYWDAWNIDKFLEE 648 (943)
T ss_pred ------------cccccccchheeecc-CCCcceeeeecc-------------------------cceechhcchhhhhh
Confidence 112233344444444 556 22211111 222335544433221
Q ss_pred -eeecCCceeEEEEEcccEEEEEEEE---eceEEEEEEEeCCCCeEEEEEEEccccccCCCCcEEEEEEEecCCCCCeEE
Q 002064 667 -FIKSEGQVPLTVMRGPILDEVHQKI---NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFY 742 (973)
Q Consensus 667 -~~~~~~~~~i~v~~G~l~~~v~~~~---~~~i~~~vrL~~~~~~ie~e~~v~~ip~~~~~~~Ev~~~f~t~i~~~~~fy 742 (973)
...+.....-.+++||+..++++.. .+.+++.|++++++++|+|+++|++. .++|.+++.|+++++++.. .
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a-~ 723 (943)
T COG0383 649 ELLALTALPEEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFA-T 723 (943)
T ss_pred hhhhhhccccchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEecccccccce-e
Confidence 1112222222367999999988765 46789999999999999999999865 6799999999999998543 3
Q ss_pred EecCCCceeeccccCCCCCcccCCCccccceEeeceeEEEEeCCce--eEEEeccccceeeccCCEEEEEEeecc-----
Q 002064 743 TDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKE--FSLLVDRALGGSSIVDGEVELMLHRRL----- 815 (973)
Q Consensus 743 TDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~--ltvl~dr~~G~ssl~~G~iElmL~Rrl----- 815 (973)
.| ..|+.++|+++.+++|+....+ -|+..++.+.|...| +++++|++||++ .+++.|.|+|.|..
T Consensus 724 ~d-~~fg~v~Rp~~~~~~W~~a~~e------~p~~~~vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~~~gd 795 (943)
T COG0383 724 AD-IPFGVVERPTHPNTSWENARFE------VPLQKFVDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVGELGD 795 (943)
T ss_pred cc-ccceeeccCCCCchhhhcccCc------chhhccccccCCccceeEeccCCcceeEe-ccCCEEEEEeccccccccc
Confidence 34 9999999999999999865433 367899999999998 888999999996 59999999999998
Q ss_pred --ccCCCcccccccccccccccccCCeEEEeEEEEEeccCCCccc--ccccchhhhcCCceeEeeccCCCcccCCccccc
Q 002064 816 --LLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAK--WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTF 891 (973)
Q Consensus 816 --~~DD~rGvge~l~d~~~~~~~~~gl~~~~~~~l~~~~~~~~~~--~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 891 (973)
.++|.-+ +|.| .++|.+.+.++..... .....++.++.|........+.. .......+
T Consensus 796 ~~~~P~p~A-------------d~~g---~h~~~y~ly~h~~~~~~~~~~~~a~~~~~P~~~~~~~~~~~--~~~~~~~~ 857 (943)
T COG0383 796 WGYRPDPEA-------------DCLG---EHEFTYALYPHQGSFLSAPTAVRAYELNVPVRTVQVEEDGV--EGTLEATL 857 (943)
T ss_pred ccccCCchh-------------hhcc---ceeEEEEEEEccccccccchhhhhhhccCceEEeecccccc--cccchhcc
Confidence 5555322 1222 3445556665554321 12234455667776665332210 00011111
Q ss_pred c---CCCCCCCCCcceEEEEeeecCCC-cEEEEecchhchhh
Q 002064 892 S---GIDSSYSLPDNVAIITLQELDDG-KILLRLAHLYQVLF 929 (973)
Q Consensus 892 ~---~l~~~~~lp~nvhlltl~~~~~~-~~llRl~h~~e~~~ 929 (973)
+ ++. ..-|+++.|-++|+.+|+ .++||+.|......
T Consensus 858 ~~~~~~~--~~~~~~~~lsA~K~aed~~~~IlR~yn~~~~~~ 897 (943)
T COG0383 858 DLLEPLL--LVGPDNLILSALKRAEDGDGLILRLYNPSGTKT 897 (943)
T ss_pred ccccccc--cCCCcceEEEeeeecccCCceEEEEeccCCCCc
Confidence 1 111 136889999999999885 79999998887765
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.1e-39 Score=384.87 Aligned_cols=382 Identities=26% Similarity=0.392 Sum_probs=259.9
Q ss_pred EEEEEEcCCCceEEEEEEEEEecCcEEEEecCCCeEEEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCC
Q 002064 490 LVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPL 569 (973)
Q Consensus 490 ~~vvvfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPpl 569 (973)
+.|+|||||+|+|+++|+|++..+.+.+.|..|++|++|+++... ....++|.|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 479999999999999999999999999999999999999998211 1235789998899999
Q ss_pred ceEEEEEEecCCCCCccccccccccccCCCCceEEecceEEEEEECCCCCeEEEEecCCcceEE--eeeeeEEeeccCCC
Q 002064 570 GFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES--VEQSYSFYPAYNGT 647 (973)
Q Consensus 570 G~~~y~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~--~~~~f~~Y~~~~G~ 647 (973)
||++|.|............ .. ....+...|||++|+|+|++.+|.|.+|+||++|+++. ..+++..|....++
T Consensus 62 Gy~~~~i~~~~~~~~~~~~-~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~ 136 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEA-SI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGD 136 (457)
T ss_dssp EEEEEEEEECSS--TTC---CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSC
T ss_pred eeEEEEeeccccccccccc-ee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEecccccc
Confidence 9999999987664322100 00 01114578999999999996669999999999999999 88899999765442
Q ss_pred CC---CCCCCCCceeEecCCCeeeecCCceeEEEEEcc--cEEEEEEEEeceEEEEEEEeCCCCeEEEEEEEccccccCC
Q 002064 648 ND---KAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGP--ILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 722 (973)
Q Consensus 648 ~~---~~~~~sGAYiF~P~~~~~~~~~~~~~i~v~~G~--l~~~v~~~~~~~i~~~vrL~~~~~~ie~e~~v~~ip~~~~ 722 (973)
.. .....+|+|.|.|++.....+.-...+. ..+. ++.+......+.++++++|++++++||++++|+|.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~--- 212 (457)
T PF07748_consen 137 YDISPLELQRSGAYLFVEDGPLRSSIRVEYKFE-LPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE--- 212 (457)
T ss_dssp TTE-SCCCGSEECCEEEEESSSEEEEEEEEEEE-EESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT---
T ss_pred ccccccccccCceEEEEecCCceEEEEEEEEEe-ccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc---
Confidence 11 1233689999998775311110000111 1111 2344444456789999999999999999999997632
Q ss_pred CCc-EEEEEEEecCCCCCeEEEecCCCceeeccccCCCCCcccCCCccccceEeeceeEEEEeCCceeEEEeccccceee
Q 002064 723 LGK-EVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSS 801 (973)
Q Consensus 723 ~~~-Ev~~~f~t~i~~~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvl~dr~~G~ss 801 (973)
..+ +++++|+|+|.++..+|+|.+|+.+.+|+++ .+.|+++|||||.+.++|.|.+.+|+|+||+++|+++
T Consensus 213 ~~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~--------~~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~ 284 (457)
T PF07748_consen 213 DHRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTH--------PNTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYES 284 (457)
T ss_dssp SCEEEEEEEEEES-S-TCEEEEESTTEEEEECESS--------TTTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEE
T ss_pred CCceeEEEEeecCCCCCCEEEECCCCeEEecCCcc--------ccCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEe
Confidence 223 6999999999999999997665554443544 2367889999999999999999889999999999998
Q ss_pred cc-CCEEEEEEeeccccCCCcccccccccccccccccCCeEEEeEEEEEeccCCCcccccccchhhhcCCceeEeeccCC
Q 002064 802 IV-DGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPPLLAFTEEDG 880 (973)
Q Consensus 802 l~-~G~iElmL~Rrl~~DD~rGvge~l~d~~~~~~~~~gl~~~~~~~l~~~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~ 880 (973)
+. +|+|+||||||+.+||++|++ +|.|.+...........+.++++++|++++.....
T Consensus 285 ~~~~g~l~ltL~R~~~~D~g~~~~--------------------~~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~~- 343 (457)
T PF07748_consen 285 LDQDGELELTLLRRPSQDDGRGVF--------------------RYALYPHSGSWDEADVVQEAYELNQPLIVFNSSNI- 343 (457)
T ss_dssp CTTTTEEEEEEEEEBSCG-SSSEE--------------------CCEEEEEEEEEEEEECHHCHHHHTS-EEEESS--T-
T ss_pred ccCCCeEEEEEeecccccCCccEE--------------------EEEEEEeccccccccchhhhhhccCccEEeecccc-
Confidence 87 999999999999999999976 13344333222211123466799999998722111
Q ss_pred CcccCCccccccCCCC-CCCCCcceEEEEe-----eecCCC-----cEEEEecchhchhhHH
Q 002064 881 DSWRNSHVTTFSGIDS-SYSLPDNVAIITL-----QELDDG-----KILLRLAHLYQVLFFF 931 (973)
Q Consensus 881 ~~~~~~~~~~~~~l~~-~~~lp~nvhlltl-----~~~~~~-----~~llRl~h~~e~~~~~ 931 (973)
.......++++.. ...+|+++|+.+| |+.+|+ .++||+.|........
T Consensus 344 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~ 402 (457)
T PF07748_consen 344 ---QARQLNSFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEA 402 (457)
T ss_dssp ---TBEE--CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCC
T ss_pred ---ccccccCCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCcccc
Confidence 1111222333321 1247777777776 777666 7999997777655444
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.83 E-value=2.3e-21 Score=170.74 Aligned_cols=75 Identities=35% Similarity=0.561 Sum_probs=65.0
Q ss_pred CcccceeechhhHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHhcccccccCCcchhhhHHHHHHH
Q 002064 358 AYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR-----SETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 432 (973)
Q Consensus 358 ~yWtGyyTSRp~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~lw~~l~l~QhHDaItGTs~~~V~~Dy~~rL 432 (973)
+||+|||||||.+|+++|++|++|++||.|.+++.. .++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 489999999999999999999999999999998542 245567899999999999999999999999999999886
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.80 E-value=8.2e-20 Score=160.54 Aligned_cols=74 Identities=36% Similarity=0.534 Sum_probs=68.2
Q ss_pred cccceeechhhHHHHHHHHHHHHHHHHHHHHhh-----ccCCCCCchHHHHHHHHHhcccccccCCcchhhhHHHHHHH
Q 002064 359 YWTGYFSSRPALKRYVKVMSGYYLAARQLEFYI-----GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 432 (973)
Q Consensus 359 yWtGyyTSRp~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~lw~~l~l~QhHDaItGTs~~~V~~Dy~~rL 432 (973)
||+|||||||.+|+++|++|++|+.+|.+.+++ +..++...++.+|+.|+++||||+||||++++|++||..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 799999999999999999999999999999885 34566778999999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.4e-20 Score=232.80 Aligned_cols=358 Identities=16% Similarity=0.111 Sum_probs=259.7
Q ss_pred CceEEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHH
Q 002064 38 GKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEV 116 (973)
Q Consensus 38 ~~~~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~v 116 (973)
.+..+|+++|+|||++|+.+.+.+.. .+...++.+++.++++|. .-|..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 34567999999999999999999886 555669999999999994 44888888876777778899999999
Q ss_pred HHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCCcEEEEec
Q 002064 117 KQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR 196 (973)
Q Consensus 117 k~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~R 196 (973)
+.+++.|++ .+|.++.+.|.+.+++|+.+|++++|..+ ...+|...+.||.+|.||+..++|+++ ..+|++.+.|+|
T Consensus 73 ~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~-~~~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~~f~r 149 (943)
T COG0383 73 KLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFD-AERFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAVAFGR 149 (943)
T ss_pred HHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHH-HHHhhhhhccccccccchhhhhhhHHH-HhcCCchhhccc
Confidence 999999999 78888999999999999999999999984 667779999999999999999999999 899999999999
Q ss_pred cchhh------hh---hhccCCcceEEEecCCCCCCCceeEEeecCCCCCCCCCCcccccCCCCCccccCcccccccHHH
Q 002064 197 IDYQD------RA---KRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQD 267 (973)
Q Consensus 197 i~~~~------k~---~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~~Y~~p~~~f~f~~~~~~~p~~d~~~i~~~nv~~ 267 (973)
+.... -. .-....-.|..|.+++ +++++.+.++..|..+ ....-. ...-++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g-~~I~~~--------------ghahid~ 210 (943)
T COG0383 150 GAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNG-NEIPAV--------------GHAHIDT 210 (943)
T ss_pred ccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhcc-cccccc--------------chhhHHH
Confidence 76321 00 1112334567888888 8888888888888877 221000 0011222
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeccCCccccchHHHHHHHHHHHHHHhcC-CCeEEEEcC----hhhHHHHHHhc-CCC
Q 002064 268 RVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYST----PSIYTDAKYAS-NES 341 (973)
Q Consensus 268 r~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~kli~~~N~~-~~~~i~~sT----~~~Yf~al~~~-~~~ 341 (973)
....-++..++.+ .+..++++.|+|..+.. .++...+++.|.- ......|+- ...|+...... ...
T Consensus 211 aWlw~l~et~r~a---~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERKA---STSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHHH---hhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 2223344445544 67778899999988776 6677777777742 233333433 33444333222 134
Q ss_pred CCCcCCCCcc-ccccCCCccc--ceeechhhHHHHHHHHHHHHH-HHHHHHH-------hh---ccCCCCCchHHHHHHH
Q 002064 342 WPLKTDDFFP-YADRAHAYWT--GYFSSRPALKRYVKVMSGYYL-AARQLEF-------YI---GRSETGHNTDSLADAL 407 (973)
Q Consensus 342 ~p~~~gDffp-y~~~~~~yWt--GyyTSRp~~K~~~R~~e~~L~-~ae~l~~-------l~---~~~~~~~~~~~lw~~l 407 (973)
.++.+||+.. -..+...|.+ ..-+||..+|..+-..+..|- -++.+.. ++ +..+|...+.-.|+..
T Consensus 283 ~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~~dg 362 (943)
T COG0383 283 LNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRWKDG 362 (943)
T ss_pred CCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeecccc
Confidence 6888999863 1122112222 345899999999877777664 2232222 11 2235666667789999
Q ss_pred HHhcccccccCCcchhhhHHHHHHHHH
Q 002064 408 AIAQHHDAVTGTEKQHVANDYAKRLAI 434 (973)
Q Consensus 408 ~l~QhHDaItGTs~~~V~~Dy~~rL~~ 434 (973)
..++.||++|||+.+.|+.+...|..+
T Consensus 363 ~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 363 TENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred cccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999888765
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.36 E-value=1.7e-06 Score=99.08 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHHH------------------------------------------
Q 002064 75 QNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAM------------------------------------------ 112 (973)
Q Consensus 75 ~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~------------------------------------------ 112 (973)
.+.+--++..|.+.|+.|++.+=...+.+|+++..+..
T Consensus 29 ~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~~ 108 (360)
T PF03065_consen 29 TECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFREI 108 (360)
T ss_dssp HHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccch
Confidence 34444566777777767766654455667887777777
Q ss_pred ----HHHHHHHHhCCcEEEEcceeeeecccCCCh-HHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhc
Q 002064 113 ----QHEVKQLVGSGQLEFINGGMCMHDEAVTHY-IDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEV 187 (973)
Q Consensus 113 ----~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~-esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~ 187 (973)
-+.+|+|+++|++|+++++|..+=-.+..- +++..|+..|.+.+++.||.+|+..|.|. .+.++.+..++ +++
T Consensus 109 ~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l-~~~ 186 (360)
T PF03065_consen 109 IGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEIL-AEA 186 (360)
T ss_dssp TT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHH-HHT
T ss_pred hhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHH-HHc
Confidence 899999999999999999998887777777 99999999999999999999999999998 79999999999 899
Q ss_pred CCcEEEEec
Q 002064 188 GFDSFFYGR 196 (973)
Q Consensus 188 G~~~~~~~R 196 (973)
||+++++.-
T Consensus 187 Gi~~~i~d~ 195 (360)
T PF03065_consen 187 GIRYTILDG 195 (360)
T ss_dssp T--EEEEEC
T ss_pred CCEEEEECc
Confidence 999999764
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.02 Score=64.96 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCe----------EEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecc-cCC
Q 002064 72 ACVQNVLDSVIPELLADKNRK----------FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDE-AVT 140 (973)
Q Consensus 72 ~~v~~il~~vi~~L~~~p~~k----------F~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~De-a~~ 140 (973)
.+..+-|+..++.+++.-.|. |..-+-.-....|+..+...-+++|++.+.|.+|+++.+.+-.-- .+.
T Consensus 75 ~ry~~~Le~~~el~e~e~~R~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~ 154 (504)
T COG1543 75 DRYLRYLEWKIELSEKEEKRYADQSLRELAEFYIPEFLNARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLG 154 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcC
Confidence 345555666666666543322 111111123467788899999999999999999999887654322 222
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 002064 141 HYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYG 195 (973)
Q Consensus 141 ~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~~~~~~~ 195 (973)
.-|++=-|+..|.+=..++||..|+--|.|. =++.+.++.+| +.+||++++.-
T Consensus 155 ~peAi~AQi~~g~~~ye~~fg~~P~GiWlPE-cay~pgie~~l-~~~Gi~yf~vd 207 (504)
T COG1543 155 GPEAIEAQILTGIELYEEHFGLAPKGIWLPE-CAYAPGIERIL-KDAGIEYFFVD 207 (504)
T ss_pred CchhhHHHHHHHHHHHHHHhCCCCCceechh-hccccchHHHH-HhcCceEEEec
Confidence 2478888999999977889999999999995 69999999999 89999999975
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.27 E-value=0.18 Score=47.75 Aligned_cols=103 Identities=17% Similarity=0.289 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHH
Q 002064 76 NVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHR 154 (973)
Q Consensus 76 ~il~~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~ 154 (973)
..+..+++.|.++.- ..|-.... +..+. .+.+++++++| +|+.+-||.-++....+.+.+.+++..+.+
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~~-~~~~~--------~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~ 87 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIGS-WVERY--------PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSRE 87 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-HH-HHHHH--------HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccceeeeeccc-ccccc--------cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHH
Confidence 445678888887642 23333322 22222 68899999999 999999999988888899999999999999
Q ss_pred HHHHHhCCCCcceeecCCCCC-ChhhHHHHhhhcCCcE
Q 002064 155 FIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 191 (973)
Q Consensus 155 ~l~~~fG~~p~vgW~iDpFGh-S~~~p~ll~~~~G~~~ 191 (973)
+|++.+|..|+. -.=|||. +..+-+++ +++||++
T Consensus 88 ~l~~~~g~~~~~--f~~P~g~~~~~~~~~l-~~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGRPPKG--FRYPFGSYDDNTLQAL-REAGYKY 122 (123)
T ss_dssp HHHHHHSSEESE--EE-GGGEECHHHHHHH-HHTT-EE
T ss_pred HHHHHhCCCCcE--EECCCCCCCHHHHHHH-HHcCCCc
Confidence 999999994443 4457886 77788999 8999986
No 15
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=94.82 E-value=1.3 Score=54.18 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=78.5
Q ss_pred EEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCC----ChHHHHHHHHHHHHHHHHHhCCCCccee
Q 002064 93 FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVT----HYIDMIDQTTLGHRFIKNEFGVTPRIGW 168 (973)
Q Consensus 93 F~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~----~~esiIrql~~G~~~l~~~fG~~p~vgW 168 (973)
|++++..-+..+-..-.++.-+.+|++++.|+.|++.-.|--+=-.+- -+++.++|+..+.+..++.||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 777763344455555678888999999999999999888744322222 4569999999999999999999999999
Q ss_pred ecCCCCCChhhHHHHhhhcCCcE
Q 002064 169 QIDPFGHSAVQAYLLGSEVGFDS 191 (973)
Q Consensus 169 ~iDpFGhS~~~p~ll~~~~G~~~ 191 (973)
.+- +=.+.++..++ +.+|+..
T Consensus 242 ~tE-l~y~~~i~~~~-~e~G~~~ 262 (615)
T COG1449 242 NTE-LAYNDQILEYF-EESGFSW 262 (615)
T ss_pred Chh-hhccHHHHHHH-HHcCCcc
Confidence 987 78899999999 9999995
No 16
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=93.53 E-value=0.62 Score=48.21 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCC-eEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHH
Q 002064 79 DSVIPELLADKNR-KFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIK 157 (973)
Q Consensus 79 ~~vi~~L~~~p~~-kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~ 157 (973)
..+++.|+++.-+ +|-.... | .+..| +.+|+++++|- ||-+-+|.-++-...+.+.+.+++..+.+.|+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~-----~-~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS-----W-AERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH-----H-HHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 3456777776432 4444332 2 23344 67899999996 79999999888777889999999999999999
Q ss_pred HHhCCCCcceeecCCCCC-ChhhHHHHhhhcCCcEE
Q 002064 158 NEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDSF 192 (973)
Q Consensus 158 ~~fG~~p~vgW~iDpFGh-S~~~p~ll~~~~G~~~~ 192 (973)
+..|..|+ |--=|+|. +..+..++ ++.|++.+
T Consensus 92 ~~~g~~~~--~fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPT--LFRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHhCCCCC--EEECCCcCCCHHHHHHH-HHcCCeEE
Confidence 99998876 45567774 67778888 89999854
No 17
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=92.89 E-value=8.8 Score=42.72 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHH
Q 002064 76 NVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHR 154 (973)
Q Consensus 76 ~il~~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~ 154 (973)
.=+-.+++.|.++-- -+|-... |+.+.+| +.+|+++++| .||.+=||...+-..-+.+...++|..+.+
T Consensus 77 vG~~RiLdlL~~~gv~aTffv~g------~~~e~~P---~~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s~~ 146 (297)
T TIGR03212 77 AGFWRLLRLFTERGIPVTVFGVA------MALARNP---EAVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEAIR 146 (297)
T ss_pred hCHHHHHHHHHHcCCCEEEEeEH------HHHHHCH---HHHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHHHH
Confidence 334557777877643 3454443 3445666 4677788899 889999998777666688889999999999
Q ss_pred HHHHHhCCCCcceeecCCCCCChhhHHHHhhh-cCCcEEEEeccc
Q 002064 155 FIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSE-VGFDSFFYGRID 198 (973)
Q Consensus 155 ~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~-~G~~~~~~~Ri~ 198 (973)
-|++..|.+| .||.. -.+|..++.|+ ++ .||.+..-+..+
T Consensus 147 ~i~~~tG~~P-~G~~~--~~~s~~T~~LL-~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 147 LHTEVTGERP-LGWYT--GRTSPNTRRLV-AEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHhCCCC-ceEEC--CCCChhHHHHH-HHhcCceEeCchhhc
Confidence 7888788765 56753 36899999999 88 999988755444
No 18
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=92.25 E-value=1 Score=47.93 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=76.9
Q ss_pred HHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHH
Q 002064 80 SVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158 (973)
Q Consensus 80 ~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~ 158 (973)
.+++.|+++-- .+|-..+. | .+..| +.+|+++++|. |+-+-+|.-++-...+.+.+.+++....+.|.+
T Consensus 54 ~lL~~L~~~~vkATFFv~G~-----~-~~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~ 123 (224)
T TIGR02884 54 KILDVLKEKKVPAAFFVTGH-----Y-IKTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKK 123 (224)
T ss_pred HHHHHHHHcCCCeEEEeech-----h-hHHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHH
Confidence 46777776643 34544442 2 23344 68899999995 688999987777777889999999999999999
Q ss_pred HhCCCCcceeecCCCCC-ChhhHHHHhhhcCCcEEE
Q 002064 159 EFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDSFF 193 (973)
Q Consensus 159 ~fG~~p~vgW~iDpFGh-S~~~p~ll~~~~G~~~~~ 193 (973)
..|..+ ..|--=|+|. +..+..++ +++|+..++
T Consensus 124 ~~G~~~-~~~fR~P~G~~~~~~~~~l-~~~Gy~~v~ 157 (224)
T TIGR02884 124 VTGQKE-MKYFRPPRGVFSERTLAYT-KELGYYTVF 157 (224)
T ss_pred HhCCCC-CCEEeCCCCCcCHHHHHHH-HHcCCcEEe
Confidence 999762 2367778994 77889999 899998643
No 19
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=89.11 E-value=3.3 Score=45.30 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHH
Q 002064 73 CVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTL 151 (973)
Q Consensus 73 ~v~~il~~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~ 151 (973)
+|...+..+++.|+++-- -+|-..+ |+.+..| +.+|+++++| .||.+=||.-.+-..-+.+.+.+++..
T Consensus 25 rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~ 94 (265)
T TIGR03006 25 RVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRR 94 (265)
T ss_pred hHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHH
Confidence 666678888999988754 4455443 3344555 5699999999 599999998776666688999999999
Q ss_pred HHHHHHHHhCCCCcceeecCC--CCC-ChhhHHHHhhhcCCcEEEEe
Q 002064 152 GHRFIKNEFGVTPRIGWQIDP--FGH-SAVQAYLLGSEVGFDSFFYG 195 (973)
Q Consensus 152 G~~~l~~~fG~~p~vgW~iDp--FGh-S~~~p~ll~~~~G~~~~~~~ 195 (973)
..+.|++..|..|+ ||-.=. +|. +.....++ +++||.+..-.
T Consensus 95 s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~YdsS~ 139 (265)
T TIGR03006 95 SKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCEEEEee
Confidence 99999888888766 454322 333 23346899 89999986543
No 20
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=88.86 E-value=4.4 Score=44.40 Aligned_cols=100 Identities=20% Similarity=0.343 Sum_probs=77.6
Q ss_pred HHHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHH
Q 002064 79 DSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIK 157 (973)
Q Consensus 79 ~~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~ 157 (973)
..+++.|.++-- .+|-..+. |. +..| +.+|+++++|. ||-+=+|.-++...-+.+.+.+++..+.+.|.
T Consensus 101 ~~iL~iLkk~~vkATFFv~G~-----~i-~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~ 170 (268)
T TIGR02873 101 PEILQILKKHDVKATFFLEGK-----WV-KENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEIIE 170 (268)
T ss_pred HHHHHHHHHCCCCEEEEeehH-----hh-hHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 357777777653 34555542 32 3445 46888999996 69999999888888888999999999999999
Q ss_pred HHhCCCCcceeecCCCCC-ChhhHHHHhhhcCCcE
Q 002064 158 NEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 191 (973)
Q Consensus 158 ~~fG~~p~vgW~iDpFGh-S~~~p~ll~~~~G~~~ 191 (973)
+..|..|+ |--=|+|. +..+..++ +++|+..
T Consensus 171 ~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 171 ATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 99999887 67678987 57788888 8999864
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=85.53 E-value=23 Score=43.73 Aligned_cols=151 Identities=17% Similarity=0.293 Sum_probs=96.1
Q ss_pred HHHHHHHhCCcEEEEcceeeeeccc--------------------CCCh-------HHHHHHHHHHHHHHHHHhCCCCcc
Q 002064 114 HEVKQLVGSGQLEFINGGMCMHDEA--------------------VTHY-------IDMIDQTTLGHRFIKNEFGVTPRI 166 (973)
Q Consensus 114 ~~vk~LV~~GrlE~vgGgwv~~Dea--------------------~~~~-------esiIrql~~G~~~l~~~fG~~p~v 166 (973)
+.||+++++|-+||-+=+|..|.-. ...| +.+.+.+....+-|++..|..|+.
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999988888655311 1122 226678999999999999998884
Q ss_pred eeecCCCCC-ChhhHHHHhhhcCCcEEEEeccchhhhhhhccCCcceEEEecCCCCCCCceeEEeecCCCCCCCCCCccc
Q 002064 167 GWQIDPFGH-SAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYF 245 (973)
Q Consensus 167 gW~iDpFGh-S~~~p~ll~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~th~~~~~Y~~p~~~f~f 245 (973)
..=|||+ +.....+. +++||+..+..+-.... .+.. |.-| + +..
T Consensus 248 --FayPyG~~n~~~~~ia-keaGY~~afT~~~G~~~----------------------~~~~--------~~Lp-R-i~I 292 (671)
T PRK14582 248 --WVWPYGEANGIALEEL-KKLGYDMAFTLESGLAN----------------------ASQL--------DSIP-R-VLI 292 (671)
T ss_pred --EecCCCCCCHHHHHHH-HHCCCeEEEEeCCCCCC----------------------CCCc--------Cccc-e-EEe
Confidence 5678995 67788999 89999988765422100 0000 1111 0 000
Q ss_pred ccCCCCCccccCcccccccHHHHHHHHHHHHHHhccccCCCeEEEeccCCccc-cchHHHHHHHHHHHHHHhcCC
Q 002064 246 EVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKY-QYARTWFRQLDKFIHYVNMDG 319 (973)
Q Consensus 246 ~~~~~~~p~~d~~~i~~~nv~~r~~~~~~~~~~~~~~~~t~~il~~~G~Df~y-~~a~~~f~n~~kli~~~N~~~ 319 (973)
. .++ . ++.|...+.... .....+++-.+-|+-| .++..+-++++++|+.+.+.+
T Consensus 293 ~---------~~~-----s----l~~f~~~v~~~~--~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 293 A---------NNP-----S----LKEFAQQIITVQ--EKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred c---------CCC-----C----HHHHHHHHhccc--CCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 0 011 1 234444443321 2455667777888887 566667799999999988654
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=82.92 E-value=6.5 Score=48.43 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCcEEEEcceeeeecc--------------------cCCChHH-------HHHHHHHHHHHHHHHhCCCCc
Q 002064 113 QHEVKQLVGSGQLEFINGGMCMHDE--------------------AVTHYID-------MIDQTTLGHRFIKNEFGVTPR 165 (973)
Q Consensus 113 ~~~vk~LV~~GrlE~vgGgwv~~De--------------------a~~~~es-------iIrql~~G~~~l~~~fG~~p~ 165 (973)
.++||+++++|-+||-+=+|..+.- ....+|+ +-+.+....+-|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4689999999999999888876631 1222332 556678888889999999887
Q ss_pred ceeecCCCCC-ChhhHHHHhhhcCCcEEEEec
Q 002064 166 IGWQIDPFGH-SAVQAYLLGSEVGFDSFFYGR 196 (973)
Q Consensus 166 vgW~iDpFGh-S~~~p~ll~~~~G~~~~~~~R 196 (973)
. ..=|||+ +...-.++ +++||+..+..+
T Consensus 247 ~--FayPyG~yn~~~~~ia-k~aGy~~afTt~ 275 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNIL-RQHGYQLAMTLD 275 (672)
T ss_pred E--EEcCCCCcCHHHHHHH-HHCCCcEEEECC
Confidence 4 5578995 78889999 899999988654
No 23
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=77.75 E-value=26 Score=34.70 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=56.7
Q ss_pred CCceEEe-cceEEEEEECCCCCeEEEEecCCcceEEeeeeeEEeeccCCCCCCCCCCCCceeEecCCCeeeecCCceeEE
Q 002064 599 KSTVEVG-QGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLT 677 (973)
Q Consensus 599 ~~~~~ie-N~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~G~~~~~~~~sGAYiF~P~~~~~~~~~~~~~i~ 677 (973)
.+..+|+ ++.|+|.++.+++.+. |++|++|....+--+=++.....| --+++|.-+ ..+.+....+|.
T Consensus 7 dgkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~~Gdg--------~~~fDFk~~--~tf~L~DGTKIt 75 (171)
T PF07481_consen 7 DGKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDADGDG--------KTDFDFKGD--MTFQLDDGTKIT 75 (171)
T ss_pred CCeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCccccCCCc--------ccceeecCc--eEEEeCCCCEEE
Confidence 3456677 8889999996678888 999999998775444333221111 126788633 345556555666
Q ss_pred EEEcccEEEEEEEEeceEEEEEEEeCCCCeEEEE
Q 002064 678 VMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVE 711 (973)
Q Consensus 678 v~~G~l~~~v~~~~~~~i~~~vrL~~~~~~ie~e 711 (973)
|..=|.-. +..+...+.|.++...+.++
T Consensus 76 V~T~p~gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 76 VDTVPWGN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred EeeeecCC------CcEEeeeEEEEcCCceEEEe
Confidence 54333221 12333445556666666554
No 24
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=66.81 E-value=2.2e+02 Score=31.80 Aligned_cols=80 Identities=13% Similarity=-0.020 Sum_probs=60.2
Q ss_pred HHHHHHHhCCcEEEEcceeeee----cccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCCChhhHHHHhhhcCC
Q 002064 114 HEVKQLVGSGQLEFINGGMCMH----DEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGF 189 (973)
Q Consensus 114 ~~vk~LV~~GrlE~vgGgwv~~----Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGhS~~~p~ll~~~~G~ 189 (973)
+.+|+.+++ -|+.+=||.-. ....-+.+.+.++|..+.+-|++..|.+|+ ||-+=-+-.+..+..++ +++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHH-HHcCC
Confidence 567777777 89988889644 234457788999999999988888887754 45554455678889999 89999
Q ss_pred cEEEEecc
Q 002064 190 DSFFYGRI 197 (973)
Q Consensus 190 ~~~~~~Ri 197 (973)
.+---.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 98744443
No 25
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=61.88 E-value=9.2 Score=31.67 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccee
Q 002064 110 EAMQHEVKQLVGSGQLEFINGGM 132 (973)
Q Consensus 110 p~~~~~vk~LV~~GrlE~vgGgw 132 (973)
++.++-+-++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 45667788999999999998877
No 26
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=42.96 E-value=46 Score=40.89 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=72.3
Q ss_pred cchhhhhhheecCCCcchhHHHHHHHHHHHHHHHh--CCCCeEEEechhh--HHHHHHhcCHHHHHHHHHHHhCCcEEEE
Q 002064 53 GWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLA--DKNRKFIYVEQAF--FQRWWDEQSEAMQHEVKQLVGSGQLEFI 128 (973)
Q Consensus 53 gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~--~p~~kF~~~e~~~--f~~Ww~~~~p~~~~~vk~LV~~GrlE~v 128 (973)
.=|.+||+||. .-+ .....+.-+| +|.|.|..++..| +.-| +...+-....+.|+.-|=-
T Consensus 54 ~~L~~FE~yy~--------~TL---~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw--~sa~dFgt~~hTLigY~vr--- 117 (682)
T PHA03393 54 DDLDTFERYYK--------NTL---TQKFLQKAEKIANPTRQFSDDDNIFDGLSPW--TSANDFGTLCHTLIGYCVR--- 117 (682)
T ss_pred hHHHHHHHHHH--------HHH---HHHHHhhhhhhcCCcccccCCCceecCCccc--cCHHHHHHHHHHHHhheEE---
Confidence 45899999996 222 2223333443 8898898777665 3334 2333444456666654322
Q ss_pred cceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCC-------CChhhHHHH
Q 002064 129 NGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG-------HSAVQAYLL 183 (973)
Q Consensus 129 gGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFG-------hS~~~p~ll 183 (973)
|..++.++-.-..+..+|..|.+++.+++...+. ++-.|+| .|=+||..|
T Consensus 118 ---y~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~ 174 (682)
T PHA03393 118 ---YNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECF 174 (682)
T ss_pred ---ecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHH
Confidence 4556666677778999999999999999998763 2555666 677888876
No 27
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=34.92 E-value=62 Score=30.36 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=46.0
Q ss_pred EEEEEecccCCCcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHHHHHHHHHHH
Q 002064 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (973)
Q Consensus 41 ~VhlVpHSH~D~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV 120 (973)
+|.=+|=.|.|.--+...+.-+ .++.+++-.|+..+... ...||. .-|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~---------~~~arvIg~vl~~~~~~------------i~D~f~------~~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEF---------QKAARVIGEVLGHSDQG------------IGDWFL------EYRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCccc---------cHHHHHHHHHHHhcCcC------------CChHHH------HHHHHHHH
Confidence 4555677788888877554444 36777888877775222 123332 25899999
Q ss_pred hCCcEEEEcceeeeec
Q 002064 121 GSGQLEFINGGMCMHD 136 (973)
Q Consensus 121 ~~GrlE~vgGgwv~~D 136 (973)
++|+||+.|-.-.|.+
T Consensus 93 ~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMRH 108 (111)
T ss_pred HCCCEEEecCCCcccc
Confidence 9999999976555543
No 28
>PHA02097 hypothetical protein
Probab=34.66 E-value=35 Score=26.86 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.7
Q ss_pred CCCcceEEEEeeecCCCcEEEEecchhchhhH
Q 002064 899 SLPDNVAIITLQELDDGKILLRLAHLYQVLFF 930 (973)
Q Consensus 899 ~lp~nvhlltl~~~~~~~~llRl~h~~e~~~~ 930 (973)
+|..+-|.+|..--..+.+|+|+.|.|.+++|
T Consensus 4 e~~rd~~~vt~amntp~gv~iri~~tf~~~~f 35 (59)
T PHA02097 4 ELDRDSQVVTSAMNTPGGVIIRIAHTFDVSNF 35 (59)
T ss_pred EcccCCceEEEEeeCCCcEEEEEEeEEeeccc
Confidence 46677788998877788999999999998854
No 29
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=33.43 E-value=3.6e+02 Score=30.87 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=23.8
Q ss_pred CCceEEecceEEEEEECCCCCeEEEEecC
Q 002064 599 KSTVEVGQGNLKLIFSSDKSKPINYINNK 627 (973)
Q Consensus 599 ~~~~~ieN~~~~v~~~~~~G~l~si~dk~ 627 (973)
...++|+|+.++++|+...|.|.++.-|+
T Consensus 73 ~~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 73 AKRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CCeEEEECCeEEEEEeCCCceeeeecccc
Confidence 34689999999999997677998886654
No 30
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=29.50 E-value=43 Score=32.73 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcc
Q 002064 73 CVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFING 130 (973)
Q Consensus 73 ~v~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgG 130 (973)
....-+..|-+.|.++|.+.-+..|++= ...-..+.|.++|++|||++...
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~e-------~tgVs~~~I~~~IreGRL~~~~~ 77 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIVE-------ETGVSEKLILKFIREGRLQLKHF 77 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHH-------HHCcCHHHHHHHHHcCCeeccCC
Confidence 4556677888889999997766655432 22223478999999999998753
No 31
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=29.11 E-value=4.5e+02 Score=27.70 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=79.4
Q ss_pred CcchhhhhhheecCCCcchhHHHHHHHHHHHHHHHhCCC-CeEEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcc
Q 002064 52 VGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFING 130 (973)
Q Consensus 52 ~gWl~T~dey~~g~~~~i~~~~v~~il~~vi~~L~~~p~-~kF~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgG 130 (973)
.--..|||+.+. .. ....+++.|+++-- .+|-... .|-+..|+..+ +.+++|.- +-+=
T Consensus 65 k~v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~---~~~~~Ghe-ig~H 123 (267)
T COG0726 65 KAVALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG------SWIERNPDLVK---RIAEAGHE-IGNH 123 (267)
T ss_pred CeEEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHH---HHHhccCe-ehhC
Confidence 334568888775 21 45567777777643 4565555 44566665444 44447765 7778
Q ss_pred eeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCCCCC-ChhhHHHHhhhcCCc
Q 002064 131 GMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFD 190 (973)
Q Consensus 131 gwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDpFGh-S~~~p~ll~~~~G~~ 190 (973)
+|--.+....+.+.+..++...+..+.+..|..|+ |.--|.|. +...-.+. +..|+.
T Consensus 124 ~~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~-~~~g~~ 181 (267)
T COG0726 124 GYDHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALA-RRLGYR 181 (267)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHH-HhCCCc
Confidence 88777777778888889999999999999999833 55566775 46667777 788886
No 32
>PRK10148 hypothetical protein; Provisional
Probab=27.95 E-value=22 Score=35.17 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.5
Q ss_pred CcceeecCCCCCChhhH
Q 002064 164 PRIGWQIDPFGHSAVQA 180 (973)
Q Consensus 164 p~vgW~iDpFGhS~~~p 180 (973)
++.||..|+||++|++-
T Consensus 123 ~~~g~v~D~fGi~W~l~ 139 (147)
T PRK10148 123 HGFGKVTDKFGVPWMIN 139 (147)
T ss_pred hccEEEECCCCCEEEEE
Confidence 46799999999999764
No 33
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=27.92 E-value=3.5e+02 Score=29.23 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=19.9
Q ss_pred eEEecceEEEEEECCCCCeEEEEec
Q 002064 602 VEVGQGNLKLIFSSDKSKPINYINN 626 (973)
Q Consensus 602 ~~ieN~~~~v~~~~~~G~l~si~dk 626 (973)
++|||+.++++|+...|.|+++.-|
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcC
Confidence 6899999999999788999988655
No 34
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=23.55 E-value=14 Score=34.32 Aligned_cols=27 Identities=19% Similarity=0.628 Sum_probs=23.9
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEEccee
Q 002064 103 RWWDEQSEAMQHEVKQLVGSGQLEFINGGM 132 (973)
Q Consensus 103 ~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgw 132 (973)
.||+. ...+.+++.||+.|++ ++.|||
T Consensus 75 ~~W~~--~~~R~~~~rll~~a~~-l~~gGY 101 (106)
T PF10074_consen 75 DEWKD--SSLRRRVRRLLRRARA-LMEGGY 101 (106)
T ss_pred ccccC--hHHHHHHHHHHHHHHH-HHHhhH
Confidence 57865 7789999999999999 899998
No 35
>PF13289 SIR2_2: SIR2-like domain
Probab=21.80 E-value=4.1e+02 Score=25.17 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=51.5
Q ss_pred EEEechhhHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCcceeecCC
Q 002064 93 FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDP 172 (973)
Q Consensus 93 F~~~e~~~f~~Ww~~~~p~~~~~vk~LV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~vgW~iDp 172 (973)
++..+..+. +.+ ...+...+.++.+.++.-+-|| ||-+.|+. |++++ +++.+..+..++-.|.+.+
T Consensus 59 ~vlt~~~y~-~~~-~~~~~~~~~l~~~l~~~~~lfi--Gys~~D~~-------i~~~l---~~~~~~~~~~~~~~~~v~~ 124 (143)
T PF13289_consen 59 IVLTEDDYE-EYY-SSNPWFPNFLRSLLRSKTLLFI--GYSFNDPD-------IRQLL---RSALENSGKSRPRHYIVIP 124 (143)
T ss_pred EEEcHHHHH-HHh-hhHHHHHHHHHHHHcCCCEEEE--EECCCCHH-------HHHHH---HHHHHhccCCCccEEEEEc
Confidence 444444442 333 2466677888888888888777 66677753 23333 2355666664455566666
Q ss_pred CCCChhhHHHHhhhcCCc
Q 002064 173 FGHSAVQAYLLGSEVGFD 190 (973)
Q Consensus 173 FGhS~~~p~ll~~~~G~~ 190 (973)
-.-......++ +..|++
T Consensus 125 ~~~~~~~~~~~-~~~~i~ 141 (143)
T PF13289_consen 125 DPDDENEREFL-EKYGIE 141 (143)
T ss_pred CCchHHHHHHH-HHcCCE
Confidence 66566777777 788876
No 36
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=20.64 E-value=1.1e+03 Score=25.70 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=25.5
Q ss_pred EecceEEEEEECCCCCeEEEEecCCcceEEe-eeeeEEeecc
Q 002064 604 VGQGNLKLIFSSDKSKPINYINNKSLVEESV-EQSYSFYPAY 644 (973)
Q Consensus 604 ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~-~~~f~~Y~~~ 644 (973)
|.++..++.||+.+|.|+|+.- .|+++.. ...+.++.+-
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~--~g~~ll~~~~~~nfwRAp 41 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKY--NGKELLKRGPKPNFWRAP 41 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEE--TTEEEECEEEEEE---S-
T ss_pred CccCCEEEEEECCCCeEEEEEE--CCEEeecCCCcccEEeCC
Confidence 5677789999999999999874 4666542 3345556543
No 37
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=20.40 E-value=1.7e+02 Score=31.27 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEechhhHHHHHHhcCHH-------HHHHHHHHHhCCcEEEEccee
Q 002064 74 VQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEA-------MQHEVKQLVGSGQLEFINGGM 132 (973)
Q Consensus 74 v~~il~~vi~~L~~~p~~kF~~~e~~~f~~Ww~~~~p~-------~~~~vk~LV~~GrlE~vgGgw 132 (973)
.+--+-.++.-+++=|...|+..++.-|+.-.....|. .|.+++.|=..|-|||+|-|-
T Consensus 185 ~rGWlldi~~cid~i~~~~FtL~diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 250 (254)
T PF06044_consen 185 SRGWLLDIMKCIDKIPKNEFTLDDIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRGR 250 (254)
T ss_dssp HHHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STTE
T ss_pred ccchHHHHHHHHHhcCccceeHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCCc
Confidence 34445556777777788899999998888887777663 455566667799999998763
No 38
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=20.22 E-value=2.4e+02 Score=28.23 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=44.4
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEE-cceeee-ecccCCChHHHHHHHHHHHHHHHHHhCCC
Q 002064 103 RWWDEQSEAMQHEVKQLVGSGQLEFI-NGGMCM-HDEAVTHYIDMIDQTTLGHRFIKNEFGVT 163 (973)
Q Consensus 103 ~Ww~~~~p~~~~~vk~LV~~GrlE~v-gGgwv~-~Dea~~~~esiIrql~~G~~~l~~~fG~~ 163 (973)
+.|....++.|+.|++.++.|++++- .=-+.. ......=-+.+++++....+.+++.+|..
T Consensus 39 ~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~~~ 101 (159)
T PF03755_consen 39 RELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVELRINEELAKAYYEALKELAEELGLA 101 (159)
T ss_pred HHHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCCcccCHHHHHHHHHHHHHHHHHcCCC
Confidence 45666778899999999999999873 222222 12222334778999999999999999874
Done!