Query 002065
Match_columns 973
No_of_seqs 43 out of 45
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 15:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11277 Med24_N: Mediator com 95.9 1.7 3.6E-05 54.7 24.5 367 21-528 13-383 (990)
2 PRK02866 cyanate hydratase; Va 85.9 1.2 2.6E-05 45.2 4.8 93 55-152 30-129 (147)
3 TIGR00673 cynS cyanate hydrata 66.5 3.1 6.8E-05 42.4 1.5 54 98-152 72-132 (150)
4 TIGR00380 cobD cobalamin biosy 39.4 13 0.00028 41.4 0.8 48 890-937 199-246 (305)
5 PF12949 HeH: HeH/LEM domain; 36.6 26 0.00056 28.3 1.9 19 942-960 7-25 (35)
6 PF03186 CobD_Cbib: CobD/Cbib 33.9 21 0.00045 39.2 1.4 46 893-938 195-244 (295)
7 PRK08878 adenosylcobinamide-ph 32.1 20 0.00043 40.0 0.9 47 890-937 202-248 (317)
8 PF02560 Cyanate_lyase: Cyanat 25.5 5.9 0.00013 36.5 -3.7 46 104-150 8-53 (73)
9 COG1270 CbiB Cobalamin biosynt 25.5 32 0.00068 39.0 1.0 76 862-937 163-251 (320)
10 PRK01209 cobD cobalamin biosyn 24.8 40 0.00087 37.3 1.6 49 890-938 195-247 (312)
11 PF01456 Mucin: Mucin-like gly 24.1 21 0.00046 34.4 -0.5 14 80-93 2-15 (143)
12 PF10755 DUF2585: Protein of u 23.9 37 0.0008 35.5 1.1 35 861-895 73-107 (165)
13 cd00559 Cyanase_C Cyanase C-te 23.7 8.2 0.00018 35.3 -3.1 47 104-151 4-50 (69)
14 PRK07630 CobD/CbiB family prot 23.7 36 0.00078 37.7 1.0 49 889-938 192-240 (312)
15 KOG0818 GTPase-activating prot 23.5 2.7E+02 0.0058 34.1 7.8 122 109-238 220-353 (669)
16 PRK00944 hypothetical protein; 22.9 39 0.00085 36.0 1.1 16 860-875 101-116 (195)
17 KOG1608 Protein transporter of 21.4 65 0.0014 36.8 2.4 58 135-197 101-158 (374)
18 PF14210 DUF4322: Domain of un 20.6 72 0.0016 29.1 2.1 21 806-826 4-25 (66)
No 1
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans. It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
Probab=95.94 E-value=1.7 Score=54.70 Aligned_cols=367 Identities=17% Similarity=0.194 Sum_probs=220.8
Q ss_pred HHhhCCCchhHHHHHHHHhhhcCCCCCCCCCcHHHHHHHHHhhhcc-CCCcchHHHHHHHHhcCCCChHHHHHhhhcccc
Q 002065 21 AQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD-NHVPITWKFLEKALTLKIVPPSLVLALLSTRVI 99 (973)
Q Consensus 21 AQer~~~PLlWA~evas~l~sa~~g~Gv~LPS~eLA~~LVs~lCfd-nn~Ps~WKfLe~AlssrLv~PLhvLALLSsRVI 99 (973)
|=.++-+|..|++-+=..+.. |++-=-.+||+.|+.+..-. ...|-+=.||++|+++++|+...||.-++---
T Consensus 13 aW~ERw~d~~w~i~iK~~~~~-----g~~~d~~~LAe~LL~qa~iG~~Pn~LiLSYLk~al~sqlvs~~~vl~~I~k~~- 86 (990)
T PF11277_consen 13 AWRERWTDIQWGINIKKIIPR-----GVSGDIYNLAECLLQQAFIGPSPNPLILSYLKYALSSQLVSYAAVLEAISKFD- 86 (990)
T ss_pred HHHhcCChhhHHHHHHHHccC-----CCcccHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHhcchhHHHHHHHHhhcc-
Confidence 334456789999999888864 23323367999999987663 36678999999999999999999887664321
Q ss_pred cCcccchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhccccc
Q 002065 100 SNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDE 179 (973)
Q Consensus 100 P~R~~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~ 179 (973)
...+|.--.=-||++...-= ...|+-| .|-++ +--=++++|.-|+-+.-.-.
T Consensus 87 --~f~k~~c~~~ll~~l~~~~~------~~sC~gk-------------------~EE~i-L~~Alls~v~WLL~~~~~~l 138 (990)
T PF11277_consen 87 --DFSKPHCINALLELLESIID------GLSCRGK-------------------AEECI-LCRALLSLVHWLLQCYEYSL 138 (990)
T ss_pred --ccchhHHHHHHHHHHHHhcC------CcccCCc-------------------chHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 13445555555555543111 1111111 22222 22224455544444321100
Q ss_pred CcccccccCCCCCCCCCCcccccCCCCccccccchhhhhhcchhHHHHHHHHHHHhhhhHHHHHHHHhhcCCCchhhHHH
Q 002065 180 GLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIE 259 (973)
Q Consensus 180 Gl~~~~~~~~~~~~~~~qdMeiD~~~~~~~kr~e~~E~Lrk~NT~mAiEvi~~fl~nK~ts~iLrL~~~Nmp~~w~~f~Q 259 (973)
+ +.+|+. +. ..++.+ +.-+..+++++++++++...+||+|+.+=|+-|+...|
T Consensus 139 -------~-------~~~e~~----~~----~~~~e~-----~l~~~~~~L~~i~~s~f~~aLL~Iak~ee~e~w~~v~q 191 (990)
T PF11277_consen 139 -------E-------KLRENN----EL----SAEQEE-----ILEKCCQRLEKILESTFLRALLYIAKLEEPESWNEVEQ 191 (990)
T ss_pred -------H-------HHhhcC----CC----cchHHH-----HHHHHHHHHHHHHcCchHHHHHHHhhhccHhHHHHHHH
Confidence 0 011111 10 122333 34567899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhccCCChHHHHHhhhhcccc--cCCCcc-ccCccceeeeccCCccccccccccCccccccchhhHHh
Q 002065 260 RLRLLALKSAALRNSKVITPEALLQLASDTRGD--LGRKSK-TAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLF 336 (973)
Q Consensus 260 RLqllea~s~al~~~k~~~~~~l~~L~~~~~~v--~~~e~k-~~~~~~~~~~~~~~s~~s~~g~~~Gas~SAlWlPfDiy 336 (973)
+..-|+...... .-+..+..+.+-..++... ...+-+ .+..+..+.+ .++ =..+ |+
T Consensus 192 ~~~~l~~~l~~~--~~~~~~~tL~~~l~kl~sl~~~~~~m~~v~~~~~~e~~---~~s------------VqaL----I~ 250 (990)
T PF11277_consen 192 KCAKLKNSLSNS--GFVKSNVTLRDQLEKLASLEKSIPSMKPVNSEQLSETI---FPS------------VQAL----IA 250 (990)
T ss_pred HHHHHHHHhccc--ccccCchHHHHHHHHHHHHHhcCccccCCCcccCCCCC---cch------------HHHH----HH
Confidence 999988743331 1112344444444443331 111110 1111111100 000 0122 33
Q ss_pred hhhccCCccccchhhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhhhhhhhhhHhh
Q 002065 337 LEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVAD 416 (973)
Q Consensus 337 lEdaMDG~qv~~tSaiEiLt~liKtLQ~vN~asW~dtFlaLWiaaLRLVQReRdp~EGPiPhldsrLCMLLsI~pLaIa~ 416 (973)
+|-.| +.++-++-+.+-...+|.+.+=++.+-|.=+|=|.+=-.- |..||. -|++.| +.+-|=|=.
T Consensus 251 vE~ll-----Npt~dtq~lVeqL~mlqrlk~~~~~~ly~EIirACfl~L~---e~~~ts---~E~~w~---AFtFlKlPq 316 (990)
T PF11277_consen 251 VEVLL-----NPTSDTQQLVEQLMMLQRLKGIPNPRLYCEIIRACFLGLI---ESPETS---EELKWC---AFTFLKLPQ 316 (990)
T ss_pred HHHHH-----ccCccHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc---cCCCCC---cchhhh---hhhhhhHHH
Confidence 44333 4577888888889999999999999999999988775332 222444 578888 555555555
Q ss_pred HhhhhhhhhcccccCCCCCCCCCCCCCccchhhHHHHhhhhcccccccCCchhhhhHHHHHHHHHHHHHhccccCCCccc
Q 002065 417 IIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYE 496 (973)
Q Consensus 417 IieEe~~~~~~~~~~~p~~~~~~k~~~~~~R~~LisSLQvLG~y~gLL~PP~~vv~aANqAA~KAa~FiSg~~~~~g~~~ 496 (973)
||.+=-.......+ ++ + ++.-..+++.++..|=++..||-
T Consensus 317 Il~~L~~~~~~~~~---~d----~--~~~~~~dl~~Afe~Ll~~~pLLD------------------------------- 356 (990)
T PF11277_consen 317 ILKQLHALSRGDKP---QD----K--IAEYSEDLVEAFELLLQLTPLLD------------------------------- 356 (990)
T ss_pred HHHHHHHhccCCCc---cc----c--cccccHHHHHHHHHHHccchhhH-------------------------------
Confidence 55543332110011 01 1 34556789999999999888871
Q ss_pred cccCCCCcccccCchhHHHHHHHHhhcccccc
Q 002065 497 SVSMNGLATSCLGNMRHLIVEACIARNLLDTS 528 (973)
Q Consensus 497 ~~~~~d~~~~~~GNmrHLIVEaCIaRnLlDtS 528 (973)
.-| +||.-|.--.+.+-|-..+||+-+
T Consensus 357 ---~~D--~kc~Cn~v~~LL~e~~K~~lise~ 383 (990)
T PF11277_consen 357 ---KMD--QKCNCNCVECLLNELVKLGLISES 383 (990)
T ss_pred ---HHh--hhcCCcHHHHHHHHHHHcCcccHH
Confidence 122 578889999999999999999866
No 2
>PRK02866 cyanate hydratase; Validated
Probab=85.86 E-value=1.2 Score=45.17 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=61.7
Q ss_pred HHHHHHHhhhccCCCcchHHHHHHHHhcCCCChHHHHHhhhcccccCcc-------cchhHHHHHHHHhhhccccccccc
Q 002065 55 LAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQ-------LHPAAYRLYLEFLTRHAFSFASLV 127 (973)
Q Consensus 55 LA~~LVs~lCfdnn~Ps~WKfLe~AlssrLv~PLhvLALLSsRVIP~R~-------~qPeAYRLYLELL~r~aFs~~~~i 127 (973)
+.+.-+..+|...|.++. ---++++..|=.|--+.+.|. ..|.|- .-|.-|||| |.+..|+-+++..|
T Consensus 30 ~S~v~vaaa~lGQ~~ls~--e~A~kla~~LgL~~~~~~~l~--~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~~i 104 (147)
T PRK02866 30 LSEVWVTAALLGQMTLPA--EEAEKVAELLGLDEDAVALLQ--EVPYRGSLPPAVPTDPLIYRFY-EMVQVYGTTLKALI 104 (147)
T ss_pred CCHHHHHHHHhCCCCCCH--HHHHHHHHHhCCCHHHHHHHh--cCCcCCCCCCCCCCCcHHHHHH-HHHHHhhHHHHHHH
Confidence 446666677777666641 111112222222223455555 478884 468899999 99999999999998
Q ss_pred CCCchhHHHhcHHHHhccccccCCc
Q 002065 128 NGPNYDKIMNSIDDVLNLSQIFGLK 152 (973)
Q Consensus 128 ~~pn~~kimkSID~~L~LS~~~g~~ 152 (973)
+-.-=|-||..||=-+.+-+.-+-.
T Consensus 105 ~E~FGDGIMSAIdf~~~v~k~~dp~ 129 (147)
T PRK02866 105 HEKFGDGIMSAIDFKLDVDKVEDPK 129 (147)
T ss_pred HHHhCCceeeeeeeceeeeeccCCC
Confidence 8666688999999887777655444
No 3
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=66.50 E-value=3.1 Score=42.37 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=44.0
Q ss_pred cccCcc-------cchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCCc
Q 002065 98 VISNRQ-------LHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLK 152 (973)
Q Consensus 98 VIP~R~-------~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~ 152 (973)
+.|.|- .-|.-|||| |.+..|+-+++..|+-.-=|-||..||=-+.+.+.-+-.
T Consensus 72 ~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~~i~E~FGDGIMSAIdF~~~v~k~~dp~ 132 (150)
T TIGR00673 72 MAPLRGCIDPVIPTDPTMYRFY-EMLQVYGTTLKAVVHEKFGDGIMSAIDFKLDVEKVADPG 132 (150)
T ss_pred cCCCCCCCCCCCCCCchHHHHH-HHHHHhhHHHHHHHHHHhCcceeeeeeeceeeeeecCCC
Confidence 468885 578899999 999999999999988666688999999887777655443
No 4
>TIGR00380 cobD cobalamin biosynthesis protein CobD. This protein is involved in cobalamin (vitamin B12) biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon.
Probab=39.38 E-value=13 Score=41.36 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=33.6
Q ss_pred hhhhhhhhhccchhHHHHHHHhhhhhccccccccccCCCCCCCcccch
Q 002065 890 ATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNL 937 (973)
Q Consensus 890 ~TGLrdL~DFLPASlatIvsYfsaEvtRGiWKp~~mNGtdWPSPaanl 937 (973)
+.-+.|+.+|+||-|.++.-.+.+-=.++-|+-..=.+..||||.+-.
T Consensus 199 aarlddiln~iPaRLtal~~~~~~~~~~~a~~~~~r~~~~~~spNsG~ 246 (305)
T TIGR00380 199 AARLDDILNYIPSRLTVFMLLFLSGKPKGAFAIVLRDAPKDPSPNSGW 246 (305)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcCCCccH
Confidence 345889999999999986433332111345666666899999998765
No 5
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=36.58 E-value=26 Score=28.26 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCCCCCCcc
Q 002065 942 QQIKKILAATGVDVPTVAG 960 (973)
Q Consensus 942 ~~ik~ILAatGVdvP~~~~ 960 (973)
.|+|+||.+.||++|+-+.
T Consensus 7 ~~Lk~iL~~~~I~~ps~Ak 25 (35)
T PF12949_consen 7 AQLKRILDEHGIEFPSNAK 25 (35)
T ss_dssp HHHHHHHHHHT---SSS--
T ss_pred HHHHHHHHHcCCCCCCCCC
Confidence 5899999999999999654
No 6
>PF03186 CobD_Cbib: CobD/Cbib protein; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon [].; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=33.95 E-value=21 Score=39.20 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=36.7
Q ss_pred hhhhhhccchhHHHHHHHhhhhhcc----ccccccccCCCCCCCcccchh
Q 002065 893 LKELSDCLPATLATVVSYFSAEVTR----GLWKPAFMNGTDWPSPATNLS 938 (973)
Q Consensus 893 LrdL~DFLPASlatIvsYfsaEvtR----GiWKp~~mNGtdWPSPaanl~ 938 (973)
|.|+++|+||-|.+..--+.+=..+ +-|+...=.|..||||.+-..
T Consensus 195 ldd~ln~iPaRLtal~~~l~~~~~~~~~~~a~~~~~r~~~~~~SpNsg~~ 244 (295)
T PF03186_consen 195 LDDLLNWIPARLTALLIALAAPFLGLDWKGALRAWRRDARKHPSPNSGWP 244 (295)
T ss_pred HHHHhCcHHHHHHHHHHHHHHccccccHHHHHHHHHhhhcCCCCCCcccH
Confidence 7899999999998887777776664 567777788999999976543
No 7
>PRK08878 adenosylcobinamide-phosphate synthase; Provisional
Probab=32.14 E-value=20 Score=40.05 Aligned_cols=47 Identities=15% Similarity=0.367 Sum_probs=33.5
Q ss_pred hhhhhhhhhccchhHHHHHHHhhhhhccccccccccCCCCCCCcccch
Q 002065 890 ATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNL 937 (973)
Q Consensus 890 ~TGLrdL~DFLPASlatIvsYfsaEvtRGiWKp~~mNGtdWPSPaanl 937 (973)
+.-+.|+.||+||-|.+..--..+- .++-||-..=.+..||||.+-.
T Consensus 202 aArlddiLnwiPARLtal~~~l~~~-~~~a~~~~~rd~~~~~SpNsG~ 248 (317)
T PRK08878 202 AVRILAILDFIPLRLFALLILLGKN-AGHTFQGLLQQSKSWPLPGPAW 248 (317)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhh-HHHHHHHHHHhcccCCCCCchH
Confidence 4468899999999998765444332 2455665555789999998764
No 8
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=25.54 E-value=5.9 Score=36.48 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccC
Q 002065 104 LHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFG 150 (973)
Q Consensus 104 ~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g 150 (973)
+-|..|||| |.+..|+-+++..++-.-=|-||..||=-+.+-+.-+
T Consensus 8 tDP~iYR~y-E~v~vYG~~~K~li~E~FGDGIMSAIdF~~~v~k~~d 53 (73)
T PF02560_consen 8 TDPLIYRLY-EIVQVYGPAIKALIHEKFGDGIMSAIDFKMDVEKVED 53 (73)
T ss_dssp -SHHHHHHH-HHHHHHHHHHHHHHHHHT-SEEEEEEEEEEEEEEEE-
T ss_pred CCCeEeeee-hhhHhhCHHHHHHHHHhhCcceEEEeeEEEEEEEeeC
Confidence 579999999 8999999999888776555888888886666555443
No 9
>COG1270 CbiB Cobalamin biosynthesis protein CobD/CbiB [Coenzyme metabolism]
Probab=25.49 E-value=32 Score=39.01 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=48.0
Q ss_pred hHHhhhhhhHHH--HHHhhhcc-CCCCchhh-----hhhhhhhhhccchhHHHHHHH-----hhhhhccccccccccCCC
Q 002065 862 WDILEATPFVLD--AALAACAH-GRLSPREL-----ATGLKELSDCLPATLATVVSY-----FSAEVTRGLWKPAFMNGT 928 (973)
Q Consensus 862 WeiLEAvPfVld--a~LTACaH-GrLS~RdL-----~TGLrdL~DFLPASlatIvsY-----fsaEvtRGiWKp~~mNGt 928 (973)
|=++--.|.++= ++=|.=++ |--++|=. .--+.|+++|+||-|.++.-- .+..-+|..||-+-=...
T Consensus 163 ~~~v~G~pgA~~YRaiNTlDsMvGyk~~~y~~fG~~sArlDD~lN~iPARLt~~l~~~~~~~~~~~~~~~a~~~~~rda~ 242 (320)
T COG1270 163 WFLVGGLPGALLYRAINTLDSMVGYRNERYRRFGWFSARLDDLLNYIPARLTALLLALASLVLGGGPTRQALRIWRRDAR 242 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhCCCCCcchhhccHHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhc
Confidence 666666665542 22233222 22232222 233789999999998754322 235667889998888899
Q ss_pred CCCCcccch
Q 002065 929 DWPSPATNL 937 (973)
Q Consensus 929 dWPSPaanl 937 (973)
.||||.+--
T Consensus 243 ~~~SpNsg~ 251 (320)
T COG1270 243 KHPSPNAGW 251 (320)
T ss_pred cCCCCCCcc
Confidence 999998754
No 10
>PRK01209 cobD cobalamin biosynthesis protein; Provisional
Probab=24.77 E-value=40 Score=37.29 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.1
Q ss_pred hhhhhhhhhccchhHHHHHHHhhhhhcccccc----ccccCCCCCCCcccchh
Q 002065 890 ATGLKELSDCLPATLATVVSYFSAEVTRGLWK----PAFMNGTDWPSPATNLS 938 (973)
Q Consensus 890 ~TGLrdL~DFLPASlatIvsYfsaEvtRGiWK----p~~mNGtdWPSPaanl~ 938 (973)
+.-+.|+.||+||-|.++.=-..|=+.+|=+| -..=.+.+||||.+-..
T Consensus 195 aarlddilnwiPaRLtal~~~l~a~~~~g~~~~a~~~~~~~~~~~~spn~g~~ 247 (312)
T PRK01209 195 AARLDDVLNYIPARLTALLLALAAPLLGGDPRGALRIWRRDARKHPSPNAGWP 247 (312)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcCCCchHH
Confidence 56789999999999988766665544444333 33457899999987643
No 11
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=24.11 E-value=21 Score=34.41 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=9.6
Q ss_pred HhcCCCChHHHHHh
Q 002065 80 LTLKIVPPSLVLAL 93 (973)
Q Consensus 80 lssrLv~PLhvLAL 93 (973)
|-||||+.|+||||
T Consensus 2 mtcRLLCalLvlaL 15 (143)
T PF01456_consen 2 MTCRLLCALLVLAL 15 (143)
T ss_pred chHHHHHHHHHHHH
Confidence 45677777777776
No 12
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=23.87 E-value=37 Score=35.49 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=23.0
Q ss_pred hhHHhhhhhhHHHHHHhhhccCCCCchhhhhhhhh
Q 002065 861 AWDILEATPFVLDAALAACAHGRLSPRELATGLKE 895 (973)
Q Consensus 861 AWeiLEAvPfVlda~LTACaHGrLS~RdL~TGLrd 895 (973)
+|||+|..|||+|--=+|-.-..-+---.....-|
T Consensus 73 ~WEi~ENsp~II~rYR~~Tia~~Y~GDSV~NSv~D 107 (165)
T PF10755_consen 73 AWEIVENSPFIIERYRAATIALDYFGDSVLNSVSD 107 (165)
T ss_pred hhhhhhCCHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 89999999999996655444444333344444444
No 13
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=23.71 E-value=8.2 Score=35.28 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=37.9
Q ss_pred cchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCC
Q 002065 104 LHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGL 151 (973)
Q Consensus 104 ~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~ 151 (973)
.-|.-|||| |.+..|+-+++..++-.-=|-||..||=-+.+-+.-+-
T Consensus 4 tDP~iYRly-E~v~vYG~~~K~li~E~FGDGIMSAIdF~~~v~k~~dp 50 (69)
T cd00559 4 TDPLIYRFY-EIVQVYGPTLKALIHEKFGDGIMSAIDFKLDVDKVEDP 50 (69)
T ss_pred CCceeeehH-HHHHHhhHHHHHHHHHHcCCceeeeEEeeeeEEeccCC
Confidence 468999999 88899999999888866668899999877776655443
No 14
>PRK07630 CobD/CbiB family protein; Provisional
Probab=23.71 E-value=36 Score=37.70 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=35.1
Q ss_pred hhhhhhhhhhccchhHHHHHHHhhhhhccccccccccCCCCCCCcccchh
Q 002065 889 LATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLS 938 (973)
Q Consensus 889 L~TGLrdL~DFLPASlatIvsYfsaEvtRGiWKp~~mNGtdWPSPaanl~ 938 (973)
.+.-|.|+.||+||-|.++.=-..+... +.|+...=.+.+||||.+...
T Consensus 192 ~aarldd~lnwiPaRL~al~~al~g~~~-~a~~~~~~~~~~~~spn~g~~ 240 (312)
T PRK07630 192 FAQRAFFVIDWVPARLTALGFAIVGNFE-DAIYAWRNQARQWPDENDGIL 240 (312)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCHH-HHHHHHHHhhccCCCCCchHH
Confidence 3566899999999999887655555432 344544556889999988753
No 15
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=23.53 E-value=2.7e+02 Score=34.14 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=78.3
Q ss_pred HHHHHHHhhhcccccccccCC--CchhHHHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhcccccCcccccc
Q 002065 109 YRLYLEFLTRHAFSFASLVNG--PNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFAS 186 (973)
Q Consensus 109 YRLYLELL~r~aFs~~~~i~~--pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~Gl~~~~~ 186 (973)
|..+-|+..|.+|-+...... .+.|.|+--+-+.|+||+.-.......-.+-=.-|+-++--+.|-+=..|
T Consensus 220 ~e~~y~vtDR~~f~lcgrKpDHkngqhfiIP~~~~sld~se~~k~ar~klq~l~n~~FeeL~mD~yDEvdRRE------- 292 (669)
T KOG0818|consen 220 VEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSLDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRE------- 292 (669)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCcceeccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhh-------
Confidence 445678999999988665433 23388888888889998877666555555555566666666666654433
Q ss_pred cCCCCCCC----------CCCcccccCCCCccccccchhhhhhcchhHHHHHHHHHHHhhhh
Q 002065 187 DKNFKWPT----------RPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKV 238 (973)
Q Consensus 187 ~~~~~~~~----------~~qdMeiD~~~~~~~kr~e~~E~Lrk~NT~mAiEvi~~fl~nK~ 238 (973)
.+.+|.+ .+-.-=+..+--++.-|++.|.+|.|-|..-=--+|-.++.|-|
T Consensus 293 -~eavW~~tqnhsal~a~~~tvpFLP~nP~~SAtRNQgRQKLArFn~~eFt~LliDil~dak 353 (669)
T KOG0818|consen 293 -TDAVWLATQNHSALVTETTTVPFLPVNPEYSATRNQGRQKLARFNAHEFATLLIDILSDAK 353 (669)
T ss_pred -hhhHHhhhccchhhcccCccccccCCCchhhhhhhhhhHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3333332 11112245556678889999999999997644445555555544
No 16
>PRK00944 hypothetical protein; Provisional
Probab=22.94 E-value=39 Score=36.03 Aligned_cols=16 Identities=31% Similarity=0.972 Sum_probs=14.1
Q ss_pred chhHHhhhhhhHHHHH
Q 002065 860 PAWDILEATPFVLDAA 875 (973)
Q Consensus 860 pAWeiLEAvPfVlda~ 875 (973)
.||||+|..|||+|--
T Consensus 101 ~aWEi~ENsp~II~RY 116 (195)
T PRK00944 101 SAWELLENSPLIIERY 116 (195)
T ss_pred hhhHhhcCCHHHHHHH
Confidence 5899999999999853
No 17
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.45 E-value=65 Score=36.82 Aligned_cols=58 Identities=34% Similarity=0.587 Sum_probs=44.9
Q ss_pred HHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhcccccCcccccccCCCCCCCCCC
Q 002065 135 IMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQ 197 (973)
Q Consensus 135 imkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~Gl~~~~~~~~~~~~~~~q 197 (973)
+.+-|..-|||||.=-..--|.|++++.++||+||.-- +|-.||.++ ++.+.|...|+
T Consensus 101 vLDKIsKr~hlSK~k~~kFnESgql~~Fy~~S~vwg~~--ili~E~yl~---~p~~lW~~yPh 158 (374)
T KOG1608|consen 101 VLDKISKRLHLSKVKHSKFNESGQLVAFYLFSCVWGFY--ILISEGYLS---DPTSLWEGYPH 158 (374)
T ss_pred HHHHHHHHhhhhHhhhhhhccCCeeeehhhHHhhhhhe--eeeeccccc---ChHHHHhcCCC
Confidence 44556677999999888889999999999999999853 445566544 56688887663
No 18
>PF14210 DUF4322: Domain of unknown function (DUF4322)
Probab=20.63 E-value=72 Score=29.14 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.1
Q ss_pred cccCCChHHHHHHHHHHHH-HH
Q 002065 806 GLVHGTSVHLIVDALLTKM-FR 826 (973)
Q Consensus 806 gl~~g~pvhq~~~~lL~mm-~~ 826 (973)
++-|-+-++||..+||+|+ |+
T Consensus 4 ~~phqnn~qQIgyKLlSml~Fk 25 (66)
T PF14210_consen 4 DLPHQNNIQQIGYKLLSMLNFK 25 (66)
T ss_pred CCCchhHHHHHHHHHHHHHccc
Confidence 4668889999999999999 63
Done!