BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002068
(973 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/852 (55%), Positives = 618/852 (72%), Gaps = 18/852 (2%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
+T A +A+ + +A+ KHQ ++ HL LL+ + LA R+ K G D L E E
Sbjct: 6 WTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQE 65
Query: 143 KFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQL 202
+ + R PKV G G L L + R+ +E D +V+V+ LVL +
Sbjct: 66 RELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEAT------ 119
Query: 203 FRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDD 262
L LK A++ +RG ++V + E Y ALE+YG DLT +A+ GKLDPVIGRD+
Sbjct: 120 --PGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDE 177
Query: 263 EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322
EIRR IQIL RRTKNNPVLIGEPGVGKTAI EGLAQRIV+GDVP+ L ++++SL MG+L
Sbjct: 178 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237
Query: 323 IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 382
+AGAKYRGEFE+RLKAV++EV +S+G++ILFIDE+HTVVGAG GA+DAGN+LKP L R
Sbjct: 238 LAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR 297
Query: 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRI 442
GELR IGATTLDEYR+ IEKDPALERRFQ VYVD+P VE+TISILRGL+E+YE+HHGVRI
Sbjct: 298 GELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRI 356
Query: 443 SDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEME 502
SDSA++ AA LS RYI+ R LPDKAIDL+DEAAA+L+M + S P +D + R L+LE+E
Sbjct: 357 SDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIE 416
Query: 503 RLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLE 562
R +L + D S++RL +EAE++ L E A+L +WE E+ ++ +++ + +D V E
Sbjct: 417 REALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRRE 476
Query: 563 IQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVS 622
I+ AER+YDLNRAAEL+YG L L+ ++E+ ++L G +R EVT DIAEIVS
Sbjct: 477 IELAERQYDLNRAAELRYGELPKLEAEVEALSEKLR-----GARFVRLEVTEEDIAEIVS 531
Query: 623 KWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASF 682
+WTGIPVSKL + VVGQD A+++VA+AI+R+RAGL DP+RPI SF
Sbjct: 532 RWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSF 591
Query: 683 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 742
+F+GPTGVGKTELAK LA+ +F+TEEA++RIDM+EYMEKHAVSRLIGAPPGYVGYEEGGQ
Sbjct: 592 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQ 651
Query: 743 LTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802
LTE VRRRPY+VILFDEIEKAH DVFN+ LQILDDGR+TDS GRTV F NTVII+TSN+G
Sbjct: 652 LTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLG 711
Query: 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 862
S IL + +P YE I+ V + FRPEF+NR+DE +VF+PL ++QI IV
Sbjct: 712 SPLILEGLQKGWP----YERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE 767
Query: 863 LQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 922
+QL ++ R+A++++ +++T+AA L GYDP +GARP++RVIQ+ +E LA+ IL G
Sbjct: 768 IQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAG 827
Query: 923 EFKDEDTIVIDT 934
E K+ D + +D
Sbjct: 828 EVKEGDRVQVDV 839
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 346/864 (40%), Positives = 495/864 (57%), Gaps = 127/864 (14%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FT+ A + + + + A H + TEH+L L+ + G+A + +G+ + ++ + E
Sbjct: 6 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 143 KFIQRQPKVLGETAGSMLGRDLEA--LIQRSREYKKEYGDSFVSVEHLVLGFTQD-QRFG 199
I R G+ + A +I+ S + ++ G S+V EH++LG ++ +
Sbjct: 66 SLIGR-----GQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120
Query: 200 KQLFRDFQISLPTLKSAIEAIRGRQ----SVIDQDPEGKYEALEKYGKDLTAMASAGKLD 255
++ + +SL + + + G S + L+ +DLTA+A LD
Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLD 180
Query: 256 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 315
PVIGR EI+R I++LSRRTKNNPVLIGEPGVGKTAI+EGLAQ+I+ +VP+ L +++++
Sbjct: 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240
Query: 316 SLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNL 375
+LDMG KYRGEFEDRLK V+ E+ ++ G IILFID A+DA N+
Sbjct: 241 TLDMGT-----KYRGEFEDRLKKVMDEIRQA-GNIILFID------------AAIDASNI 282
Query: 376 LKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE 435
LKP L RGEL+CIGATTLDEYRKYIEKD ALERRFQ + VDQP+V+++I IL+GLR+RYE
Sbjct: 283 LKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYE 342
Query: 436 LHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRS 495
HH V I+D A+ A LSD R++ D+ + A+D I+ +
Sbjct: 343 AHHRVSITDDAIEAAVKLSD-----RYISDRFL----------------PDKAIDLIDEA 381
Query: 496 VLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEE 555
SK RL T ++ ++++
Sbjct: 382 -----------------GSKVRLRSF----------------------TTPPNLKELEQK 402
Query: 556 IDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGS 615
+D V E A + + +AA L+ + L+ Q+E +K E S EVT
Sbjct: 403 LDEVRKEKDAAVQSQEFEKAASLR-DTEQRLREQVEDTKKSWKEKQGQENS----EVTVD 457
Query: 616 DIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAGLSDP 675
DIA +VS WTG+PVSK+ Q+ V+GQD AV +VA+A++R+RAGL DP
Sbjct: 458 DIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDP 517
Query: 676 HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV 735
RPI SF+F+GPTGVGKTELA+ALA +F EE+++RIDMSEYMEKH+ S
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS---------- 567
Query: 736 GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795
GGQLTE VRR+PY+V+L D IEKAH DVFN+ LQ+L+DGR+TDS+GRTV F NT++
Sbjct: 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIL 623
Query: 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 855
IMTSNVG+ K +VM + FRPEF+NR+DE IVF L++
Sbjct: 624 IMTSNVGASE------------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKK 665
Query: 856 QISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915
++ IV L D++ KR+ ++ + +++TDAA + G D YGARP++R IQ++VE+ L
Sbjct: 666 HLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRL 725
Query: 916 AKGILRGEFKDEDTIVIDTEVTAF 939
++ +LRG IV+D E F
Sbjct: 726 SEELLRGNIHKGQHIVLDVEDGEF 749
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/397 (62%), Positives = 315/397 (79%), Gaps = 6/397 (1%)
Query: 229 QDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVG 288
+ E Y ALE+YG DLT +A+ GKLDPVIGRD+EIRR IQIL RRTKNNPVLIGEPGVG
Sbjct: 7 EHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVG 66
Query: 289 KTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEG 348
KTAI EGLAQRIV+GDVP+ L ++++SL MG+L+AGAKYRGEFE+RLKAV++EV +S+G
Sbjct: 67 KTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQG 126
Query: 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 408
++ILFIDE+HTVVGAG GA+DAGN+LKP L RGELR IGATTLDEYR+ IEKDPALER
Sbjct: 127 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALER 185
Query: 409 RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468
RFQ VYVD+P VE+TISILRGL+E+YE+HHGVRISDSA++ AA LS RYI+ R LPDKAI
Sbjct: 186 RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 245
Query: 469 DLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLL 528
DL+DEAAA+L+M + S P +D + R L+LE+ER +L + D S++RL +EAE++ L
Sbjct: 246 DLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKL 305
Query: 529 KERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQR 588
E A+L +WE E+ ++ +++ + +D V EI+ AER+YDLNRAAEL+YG L L+
Sbjct: 306 TEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEA 365
Query: 589 QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWT 625
++E+ ++L G +R EVT DIAEIVS+WT
Sbjct: 366 EVEALSEKLR-----GARFVRLEVTEEDIAEIVSRWT 397
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/284 (61%), Positives = 225/284 (79%), Gaps = 4/284 (1%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710
VVGQD A+++VA+AI+R+RAGL DP+RPI SF+F+GPTGVGKTELAK LA+ +F+TEEA+
Sbjct: 16 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 75
Query: 711 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNV 770
+RIDM+EYMEKHAVSRLIGAPPGYVGYEEGGQLTE VRRRPY+VILFD IEKAH DVFN+
Sbjct: 76 IRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNI 135
Query: 771 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 830
LQILDDGR+TDS GRTV F NTVII+TSN+GS IL E K YE I+ V
Sbjct: 136 LLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLIL----EGLQKGWPYERIRDEVFKV 191
Query: 831 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLG 890
+ FRPEF+NR+DE +VF+PL ++QI IV +QL ++ R+A++++ +++T+AA L
Sbjct: 192 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLA 251
Query: 891 SLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDT 934
GYDP +GARP++RVIQ+ +E LA+ IL GE K+ D + +D
Sbjct: 252 ERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDV 295
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 357 bits (917), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 220/284 (77%), Gaps = 4/284 (1%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710
VVGQD A+++VA+AI+R+RAGL DP+RPI SF+F+GPTGVGKTELAK LA+ +F+TEEA
Sbjct: 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAX 78
Query: 711 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNV 770
+RID +EY EKHAVSRLIGAPPGYVGYEEGGQLTE VRRRPY+VILFD IEKAH DVFN+
Sbjct: 79 IRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNI 138
Query: 771 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 830
LQ LDDGR+TDS GRTV F NTVII TSN+GS IL + +P YE I+ V
Sbjct: 139 LLQXLDDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILEGLQKGWP----YERIRDEVFKV 194
Query: 831 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLG 890
+ FRPEF+NR+DE +VF+PL ++QI IV +Q ++ R+A++++ +++T+AA L
Sbjct: 195 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQXSYLRARLAEKRISLELTEAAKDFLA 254
Query: 891 SLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDT 934
GYDP +GARP++RVIQ+ +E LA+ IL GE K+ D + +D
Sbjct: 255 ERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDV 298
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 335 bits (858), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 268/428 (62%), Gaps = 30/428 (7%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FT+ A + + + + A H + TEH+L L+ + G+A + +G+ + ++ + E
Sbjct: 6 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 143 KFIQRQPKVLGETAGSMLGRDLEA--LIQRSREYKKEYGDSFVSVEHLVLGFTQD-QRFG 199
I R G+ + A +I+ S + ++ G S+V EH++LG ++ +
Sbjct: 66 SLIGR-----GQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120
Query: 200 KQLFRDFQISLPTLKSAIEAIRGRQ----SVIDQDPEGKYEALEKYGKDLTAMASAGKLD 255
++ + +SL + + + G S + L+ +DLTA+A LD
Sbjct: 121 ARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLD 180
Query: 256 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 315
PVIGR EI+R I++LSRRTKNNPVLIGEPGVGKTAI+EGLAQ+I+ +VP+ L +++++
Sbjct: 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240
Query: 316 SLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNL 375
+LDMG KYRGEFEDRLK V+ E+ ++ G IILFID A+DA N+
Sbjct: 241 TLDMGT-----KYRGEFEDRLKKVMDEIRQA-GNIILFID------------AAIDASNI 282
Query: 376 LKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE 435
LKP L RGEL+CIGATTLDEYRKYIEKD ALERRFQ + VDQP+V+++I IL+GLR+RYE
Sbjct: 283 LKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYE 342
Query: 436 LHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRS 495
HH V I+D A+ A LSDRYIS RFLPDKAIDL+DEA +K+++ + P L E+ +
Sbjct: 343 AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQK 402
Query: 496 VLKLEMER 503
+ ++ E+
Sbjct: 403 LDEVRKEK 410
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 140/193 (72%), Positives = 168/193 (87%)
Query: 236 EALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEG 295
+AL+KY DLT A GKLDPVIGRD+EIRR IQ+L RRTKNNPVLIGEPGVGKTAI EG
Sbjct: 3 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 62
Query: 296 LAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355
LAQRI+ G+VP+ L R++++LDMGAL+AGAKYRGEFE+RLK VL ++ + EG +ILFID
Sbjct: 63 LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122
Query: 356 EIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYV 415
E+HT+VGAG +GAMDAGN+LKP L RGEL C+GATTLDEYR+YIEKD ALERRFQ+V+V
Sbjct: 123 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFV 182
Query: 416 DQPNVEDTISILR 428
+P+VEDTI+ILR
Sbjct: 183 AEPSVEDTIAILR 195
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 298 bits (764), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 140/186 (75%), Positives = 168/186 (90%), Gaps = 1/186 (0%)
Query: 235 YEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISE 294
Y+ALEKY +DLTA+A AGKLDPVIGRD EIRR IQILSRRTKNNP+L+G+PGVGKTAI E
Sbjct: 2 YQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61
Query: 295 GLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354
GLA +IVQGDVP +L RKL+SLD+ +LIAGAKYRG+FE+RLK++LKEV ++EGQ+++FI
Sbjct: 62 GLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121
Query: 355 DEIHTVVGAGAT-NGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQV 413
DEIHTVVGAGA GA+DAGN+LKPML RGELRCIGATT+ EYR++IEKD ALERRFQQ+
Sbjct: 122 DEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQI 181
Query: 414 YVDQPN 419
V+QP+
Sbjct: 182 LVEQPS 187
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 296 bits (757), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 248/403 (61%), Gaps = 18/403 (4%)
Query: 98 AKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLG---E 154
A+E++H+ + EHLL ALL N AR VD L + E FI++ VL E
Sbjct: 17 AREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEE 74
Query: 155 TAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLG-FTQDQRFGKQLFRDFQIS-LPT 212
+ + ++QR+ + + G + V+ ++++ F++ + L R ++S L
Sbjct: 75 ERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDV 134
Query: 213 LKSAIEAIRGRQSVIDQDP---------EGKYEALEKYGKDLTAMASAGKLDPVIGRDDE 263
+ R + DP G E LE + +L +A G +DP+IGR+ E
Sbjct: 135 VNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKE 194
Query: 264 IRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323
+ R IQ+L RR KNNP+L+GE GVGKTAI+EGLA RIVQGDVP+ + + + SLD+G+L+
Sbjct: 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254
Query: 324 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA-MDAGNLLKPMLGR 382
AG KYRG+FE R KA+LK++ E + ILFIDEIHT++GAGA +G +DA NL+KP+L
Sbjct: 255 AGTKYRGDFEKRFKALLKQL-EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS 313
Query: 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRI 442
G++R IG+TT E+ EKD AL RRFQ++ + +P++E+T+ I+ GL+ +YE HH VR
Sbjct: 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRY 373
Query: 443 SDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSK 485
+ A+ A L+ +YI+ R LPDKAID++DEA A+ ++ SK
Sbjct: 374 TAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK 416
Score = 249 bits (637), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 201/349 (57%), Gaps = 24/349 (6%)
Query: 609 REEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRS 668
++ V +DI +V++ IP + QS V GQD A++++ EAI+ +
Sbjct: 418 KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA 477
Query: 669 RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728
RAGL H+P+ SF+F GPTGVGKTE+ L S E L+R DMSEYME+H VSRLI
Sbjct: 478 RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL-SKALGIE--LLRFDMSEYMERHTVSRLI 534
Query: 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788
GAPPGYVG+++GG LT+ V + P+AV+L DEIEKAH DVFN+ LQ++D+G +TD+ GR
Sbjct: 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594
Query: 789 SFTNTVIIMTSNVG-------SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN 841
F N V++MT+N G S +++ D+ T A E IK+ IF PEF N
Sbjct: 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNST----DAMEEIKK--------IFTPEFRN 642
Query: 842 RVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGAR 901
R+D I F L D I +V + +Q ++ + + ++V+ A L GYD GAR
Sbjct: 643 RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGAR 702
Query: 902 PVKRVIQQYVENELAKGILRGEFKD--EDTIVIDTEVTAFSNGQLPQQK 948
P+ RVIQ ++ LA +L G D + T+ +D E + G QK
Sbjct: 703 PMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQK 751
>pdb|1KHY|A Chain A, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
pdb|1KHY|B Chain B, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
pdb|1KHY|C Chain C, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
pdb|1KHY|D Chain D, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
Length = 148
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%)
Query: 90 AIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQP 149
A+ + +A + +Q +E HL ALL Q+ G + + G++ +L + + R P
Sbjct: 13 ALADAQSLALGHDNQFIEPLHLXSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLP 72
Query: 150 KVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQIS 209
+V G +DL ++ + ++ GD+F+S E VL + + + + +
Sbjct: 73 QVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGAT 132
Query: 210 LPTLKSAIEAIRGRQS 225
+ AIE RG +S
Sbjct: 133 TANITQAIEQXRGGES 148
>pdb|3FES|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
Length = 145
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FT A +AI + + AK H IV +EH+L LL ++ G+A ++ SKVG TE
Sbjct: 8 FTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGF--------TE 59
Query: 143 KFIQRQPKVLGETAGSMLGRDL------EALIQRSREYKKEYGDSFVSVEHLVLGFTQD 195
+++ + V E G + D+ + +++ S + + +++ EH++L Q+
Sbjct: 60 AYLEGKI-VDXEGKGEEISEDIVLSPRSKQILELSGXFANKLKTNYIGTEHILLAIIQE 117
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 94 SPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEAT 141
S A + K + TEH+L A++++ G+A +I + GV++ L + T
Sbjct: 93 SGXFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLT 140
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GK+ +++ +A N S+ L++ K+ GE E +K +
Sbjct: 171 LLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVS--KWLGESEKLVKNL 219
Query: 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDA----GNLLKPMLGRG----ELRCIGAT 391
+ E++ II FIDEI ++ G+ + N + A L M G G + +GAT
Sbjct: 220 FQLARENKPSII-FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278
Query: 392 TLDEYRKYIEKDPALERRFQQ-VYVDQPNVEDTISILR 428
+ D A+ RRF++ +Y+ P ++ R
Sbjct: 279 NIPWVL-----DSAIRRRFEKRIYIPLPEAHARAAMFR 311
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 19/93 (20%)
Query: 651 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 705
++GQD A +SVA A++ R L++ R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 73
Query: 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 738
++++ +++ E GYVG E
Sbjct: 74 ANAPFIKVEATKFTEV-----------GYVGKE 95
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 19/93 (20%)
Query: 651 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 705
++GQD A +SVA A++ R L++ R + + +GPTGVGKTE+A+ LA
Sbjct: 16 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 72
Query: 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 738
++++ +++ E GYVG E
Sbjct: 73 ANAPFIKVEATKFTEV-----------GYVGKE 94
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 19/93 (20%)
Query: 651 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 705
++GQD A +SVA A++ R L++ R + + +GPTGVGKTE+A+ LA
Sbjct: 23 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 79
Query: 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 738
++++ +++ E GYVG E
Sbjct: 80 ANAPFIKVEATKFTEV-----------GYVGKE 101
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|B Chain B, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|C Chain C, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|D Chain D, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|E Chain E, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|F Chain F, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|G Chain G, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|H Chain H, Structure Of Meca121 & Clpc N-Domain Complex
Length = 149
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FT+ A + + + + A H + TEH+L L+ + G+A + +G+ + ++ + E
Sbjct: 6 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 143 KFIQRQPKVLGETAGSMLGRDLEA--LIQRSREYKKEYGDSFVSVEHLVLGFTQD 195
I R G+ + A +I+ S + ++ G S+V EH++LG ++
Sbjct: 66 SLIGR-----GQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 82 DFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVD 133
+T A + I S D A++ H V TEH+L L+ + G+A R+ + +GV
Sbjct: 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVS 130
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 664 AIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723
A+Q+ L P GP GVGKT LAK++A + VRI + ++
Sbjct: 98 AVQKLTKSLKGP-----ILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGVRDESE 149
Query: 724 V----SRLIGAPPGYV--GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDV----FNVFLQ 773
+ +GA PG + G ++ G+L V L DEI+K SD + L+
Sbjct: 150 IRGHRRTYVGAMPGRIIQGMKKAGKLN--------PVFLLDEIDKMSSDFRGDPSSAMLE 201
Query: 774 ILD 776
+LD
Sbjct: 202 VLD 204
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N-
Domain
Length = 146
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FT+ A + + + + A H + TEH+L L+ + G+A + +G+ + ++ + E
Sbjct: 7 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 66
Query: 143 KFIQRQPKVLGETAGSMLGRDLEA--LIQRSREYKKEYGDSFVSVEHLVLGFTQD 195
I R G+ + A +I+ S + ++ G S+V EH++LG ++
Sbjct: 67 SLIGR-----GQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 116
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 82 DFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVD 133
+T A + I S D A++ H V TEH+L L+ + G+A R+ + +GV
Sbjct: 80 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVS 131
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 51/217 (23%)
Query: 271 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM-NRKLISLDMGALIAGAKYR 329
L + +L+G PG GKT +++ +A + VP M I + +G + ++ R
Sbjct: 39 LGAKIPKGVLLVGPPGTGKTLLAKAVAG---EAHVPFFSMGGSSFIEMFVG--LGASRVR 93
Query: 330 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGN---------LLKPML 380
F E + + I+FIDEI +G G + +GN LL M
Sbjct: 94 DLF---------ETAKKQAPSIIFIDEIDA-IGKSRAAGGVVSGNDEREQTLNQLLAEMD 143
Query: 381 GRGE----LRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR----- 428
G G + + AT E DPAL R RF +QV VD+P+ + IL+
Sbjct: 144 GFGSENAPVIVLAATNRPEIL-----DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198
Query: 429 -------GLRERYELHHGVRISDSALV--EAAILSDR 456
L+E +L G+ +D A + EAA+L+ R
Sbjct: 199 VKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 28/111 (25%)
Query: 678 PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY 737
P + GP G GKT A+A+A+ T+ +R+ SE ++K YVG
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVAN---RTDATFIRVIGSELVQK------------YVG- 285
Query: 738 EEGG----QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 784
EG +L E+ R + +I FDEI+ F DDG D++
Sbjct: 286 -EGARMVRELFEMARTKKACIIFFDEIDAVGGARF-------DDGAGGDNE 328
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GKT + +A R + I + L+ KY GE R+
Sbjct: 247 LLYGPPGTGKTLCARAVANR----------TDATFIRVIGSELVQ--KYVGEGA-RMVRE 293
Query: 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML----------GRGELRCIG 389
L E+ ++ I+F DEI V GA +GA + + ML RG ++ +
Sbjct: 294 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353
Query: 390 ATTLDEYRKYIEKDPALERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVR 441
AT + DPAL R ++V P++E +I R + + G+R
Sbjct: 354 ATN-----RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR 403
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain
Length = 150
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FT+ A + + + + A H + TEH+L L+ + G+A + +G+ + ++ + E
Sbjct: 6 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 143 KFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQD 195
I R ++ + + +I+ S + ++ G S+V EH++LG ++
Sbjct: 66 SLIGRAQEM---SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 82 DFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVD 133
+T A + I S D A++ H V TEH+L L+ + G+A R+ + +GV
Sbjct: 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVS 130
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GK+ +++ +A N S+ L++ K+ GE E +K +
Sbjct: 49 LLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVS--KWLGESEKLVKNL 97
Query: 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDA----GNLLKPMLGRG----ELRCIGAT 391
+ E++ II FIDEI ++ G+ + N + A L M G G + +GAT
Sbjct: 98 FQLARENKPSII-FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156
Query: 392 TLDEYRKYIEKDPALERRFQQ-VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEA 450
+ D A+ RRF++ +Y+ P ++ ++LH G + ++L EA
Sbjct: 157 NIPWVL-----DSAIRRRFEKRIYIPLPEPHARAAM-------FKLHLGT--TQNSLTEA 202
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 674 DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG 733
DP R + + GP G GKT L KA+A+ +T+ A +R++ SE++ K+ +G P
Sbjct: 204 DPPRGV---LLYGPPGTGKTMLVKAVAN---STKAAFIRVNGSEFVHKY-----LGEGPR 252
Query: 734 YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFN 769
V + + R ++I DE++ + F+
Sbjct: 253 MV-----RDVFRLARENAPSIIFIDEVDSIATKRFD 283
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 651 VVGQDPAVKSVAEAIQRS--RAGLSDPHRPIAS---FMFMGPTGVGKTELAKALASYMFN 705
++GQ A ++VA A++ R L +P R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 73
Query: 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE-----------EGGQLTEVVRRRPYAV 754
++++ +++ E GYVG E GG + V + +
Sbjct: 74 ANAPFIKVEATKFTE-----------VGYVGKEVDSIIRDLTDSAGGAIDAVEQN---GI 119
Query: 755 ILFDEIEK 762
+ DEI+K
Sbjct: 120 VFIDEIDK 127
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED 334
T N ++IG GVGKT I+ LA+ L N I ++ Y G+ D
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAK----------LANAPFIKVEATKFTE-VGYVGKEVD 97
Query: 335 RLKAVLKEVTESEGQI--------ILFIDEIHTVVGAGATNGA 369
++++++T+S G I+FIDEI + G +GA
Sbjct: 98 ---SIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA 137
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 19/93 (20%)
Query: 651 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 705
++GQ A ++VA A++ R L +P R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 73
Query: 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 738
++++ +++ E GYVG E
Sbjct: 74 ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 46/202 (22%)
Query: 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 127
Query: 332 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 384
E +K + E++ II FID++ + G G +A LL M G G
Sbjct: 128 SEKLVKQLFAMARENKPSII-FIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 185
Query: 385 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 430
+ +GAT + + D A+ RRF+ ++Y+ P NV DT S+L
Sbjct: 186 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--T 238
Query: 431 RERYE----LHHGVRISDSALV 448
+E Y + G SD A+V
Sbjct: 239 KEDYRTLGAMTEGYSGSDIAVV 260
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 675 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 74 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 125
Query: 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761
G V QL + R ++I D+++
Sbjct: 126 GESEKLV-----KQLFAMARENKPSIIFIDQVD 153
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 56 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 103
Query: 332 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 384
E +K + E++ II FIDE+ + G G +A LL M G G
Sbjct: 104 SEKLVKQLFAMARENKPSII-FIDEVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 161
Query: 385 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 430
+ +GAT + + D A+ RRF+ ++Y+ P NV DT +L
Sbjct: 162 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--T 214
Query: 431 RERYE----LHHGVRISDSALV 448
+E Y + G SD A+V
Sbjct: 215 KEDYRTLGAMTEGYSGSDIAVV 236
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 675 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 50 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 101
Query: 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761
G V QL + R ++I DE++
Sbjct: 102 GESEKLV-----KQLFAMARENKPSIIFIDEVD 129
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 19/93 (20%)
Query: 651 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 705
++GQ A ++VA A++ R L +P R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKL--- 73
Query: 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 738
++++ +++ E GYVG E
Sbjct: 74 ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 30/153 (19%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GKT +++ +A A N ++ +L + KY GE E ++A+
Sbjct: 152 LLFGPPGNGKTMLAKAVA----------AESNATFFNISAASLTS--KYVGEGEKLVRAL 199
Query: 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML----------GRGELRCIG 389
E + II FID++ +++ G DA LK G + +G
Sbjct: 200 FAVARELQPSII-FIDQVDSLL-CERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257
Query: 390 ATTLDEYRKYIEKDPALERRF-QQVYVDQPNVE 421
AT + E D A+ RRF ++VYV PN E
Sbjct: 258 ATNRPQ-----ELDEAVLRRFIKRVYVSLPNEE 285
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 47 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 94
Query: 332 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 384
E +K + E++ II FID++ + G G +A LL M G G
Sbjct: 95 SEKLVKQLFAMARENKPSII-FIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 152
Query: 385 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 430
+ +GAT + + D A+ RRF+ ++Y+ P NV DT +L
Sbjct: 153 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-- 205
Query: 431 RERYE----LHHGVRISDSALV 448
+E Y + G SD A+V
Sbjct: 206 KEDYRTLGAMTEGYSGSDIAVV 227
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 675 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 41 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 92
Query: 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761
G V QL + R ++I D+++
Sbjct: 93 GESEKLV-----KQLFAMARENKPSIIFIDQVD 120
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATE 142
FTD A + IV + + A+ H + TEH+L L+ + G+A + +G+ + + E
Sbjct: 7 FTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVE 66
Query: 143 KFIQR--QPKVLGETAGSM-LGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQD 195
+ I + QP T G + + +++ S + G ++ E L+LG ++
Sbjct: 67 EIIGQGSQP-----TTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIRE 117
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 65 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 112
Query: 332 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 384
E +K + E++ II FID++ + G G +A LL M G G
Sbjct: 113 SEKLVKQLFAMARENKPSII-FIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 170
Query: 385 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 430
+ +GAT + + D A+ RRF+ ++Y+ P NV DT +L
Sbjct: 171 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--T 223
Query: 431 RERYE----LHHGVRISDSALV 448
+E Y + G SD A+V
Sbjct: 224 KEDYRTLGAMTEGYSGSDIAVV 245
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 675 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 59 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 110
Query: 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761
G V QL + R ++I D+++
Sbjct: 111 GESEKLV-----KQLFAMARENKPSIIFIDQVD 138
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 704
+VGQ+ VK + ++ S PH +F GP GVGKT A ALA +F
Sbjct: 27 IVGQEHIVKRLKHYVKTG----SMPH-----LLFAGPPGVGKTTAALALARELF 71
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRI 300
+LD ++G++ ++R + + + + G PGVGKT + LA+ +
Sbjct: 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 43/222 (19%)
Query: 268 IQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP-QALMNRKLISLDMGALIAGA 326
Q L + +++G PG GKT +++ +A + VP + + + +G + +
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG---EAKVPFFTISGSDFVEMFVG--VGAS 91
Query: 327 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV---GAGATNGAMDAGNLLKPML--- 380
+ R FE KA I+FIDEI V GAG G + L ML
Sbjct: 92 RVRDMFEQAKKAA---------PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142
Query: 381 ----GRGELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILRGLRER 433
G + I AT + DPAL R RF +QV V P+V RG RE+
Sbjct: 143 DGFEGNEGIIVIAATNRPDVL-----DPALLRPGRFDRQVVVGLPDV-------RG-REQ 189
Query: 434 YELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475
H R+ + ++AAI++ R G D A +LV+EAA
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIA-RGTPGFSGADLA-NLVNEAA 229
>pdb|1MBU|A Chain A, Crystal Structure Analysis Of Clpsn Heterodimer
pdb|1MBU|B Chain B, Crystal Structure Analysis Of Clpsn Heterodimer
pdb|1MBV|A Chain A, Crystal Structure Analysis Of Clpsn Heterodimer Tetragonal
Form
pdb|1MBX|A Chain A, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
pdb|1MBX|B Chain B, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
Length = 142
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 98 AKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVL 152
A+E++H+ + EHLL ALL N AR VD L + E FI++ VL
Sbjct: 17 AREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQELEAFIEQTTPVL 69
>pdb|1K6K|A Chain A, Crystal Structure Of Clpa, An Aaa+ Chaperone-Like
Regulator Of Clpap Protease Implication To The
Functional Difference Of Two Atpase Domains
pdb|1R6C|X Chain X, High Resolution Structure Of Clpn
pdb|1R6O|A Chain A, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
pdb|1R6O|B Chain B, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
pdb|1R6Q|A Chain A, Clpns With Fragments
pdb|1R6Q|B Chain B, Clpns With Fragments
Length = 143
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 98 AKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVL 152
A+E++H+ + EHLL ALL N AR VD L + E FI++ VL
Sbjct: 17 AREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQELEAFIEQTTPVL 69
>pdb|1LZW|B Chain B, Structural Basis Of Clps-Mediated Switch In Clpa Substrate
Recognition
pdb|1MG9|B Chain B, The Structural Basis Of Clps-Mediated Switch In Clpa
Substrate Recognition
Length = 146
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 98 AKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVL 152
A+E++H+ + EHLL ALL N AR VD L + E FI++ VL
Sbjct: 17 AREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQELEAFIEQTTPVL 69
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GKT +++ +A N I + L+ K+ GE +K +
Sbjct: 55 LLYGPPGTGKTLLAKAVATE----------TNATFIRVVGSELV--KKFIGEGASLVKDI 102
Query: 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGN---------LLKPMLG---RGELRC 387
K E II FIDEI + A A+ G+ LL M G RG+++
Sbjct: 103 FKLAKEKAPSII-FIDEIDAI--AAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159
Query: 388 IGATTLDEYRKYIEKDPALER--RFQQVY-VDQPNVEDTISILRGLRERYELHHGVRISD 444
IGAT + DPA+ R RF ++ V P+ + + IL+ + L V + +
Sbjct: 160 IGATNRPDIL-----DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEE 214
Query: 445 SA 446
A
Sbjct: 215 IA 216
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 678 PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY 737
P + GP G GKT LAKA+A+ T +R+ SE ++K ++G
Sbjct: 50 PPKGILLYGPPGTGKTLLAKAVAT---ETNATFIRVVGSELVKK------------FIG- 93
Query: 738 EEGGQLT----EVVRRRPYAVILFDEIE 761
EG L ++ + + ++I DEI+
Sbjct: 94 -EGASLVKDIFKLAKEKAPSIIFIDEID 120
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF--NTEE 708
VVGQD ++ + ++R PH +F GP G GKT A ALA +F N +
Sbjct: 19 VVGQDEVIQRLKGYVERKNI----PH-----LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 709 ALVRIDMSEY----MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH 764
+ ++ S+ + +H + P GG P+ +I DE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAP------IGGA--------PFKIIFLDEADALT 115
Query: 765 SD 766
+D
Sbjct: 116 AD 117
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQ 298
LD V+G+D+ I+R + R+ + + G PG GKTA + LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF--NTEE 708
VVGQD ++ + ++R PH +F GP G GKT A ALA +F N +
Sbjct: 19 VVGQDEVIQRLKGYVERKNI----PH-----LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 709 ALVRIDMSEY----MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH 764
+ ++ S+ + +H + P GG P+ +I DE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAP------IGGA--------PFKIIFLDEADALT 115
Query: 765 SD 766
+D
Sbjct: 116 AD 117
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQ 298
LD V+G+D+ I+R + R+ + + G PG GKTA + LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 271 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 59 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 114
Query: 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 383
F E + I+FIDEI V VG G LL M G
Sbjct: 115 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165
Query: 384 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 428
+ I + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 166 KDTAIVVMAATNRPDIL--DPALLRPGRFDRQIAIDAPDVKGREQILR 211
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 683 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 742
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 68 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 114
Query: 743 LTEVVRRRPYAVILFDEIE 761
L E +R ++ DEI+
Sbjct: 115 LFETAKRHAPCIVFIDEID 133
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 38/144 (26%)
Query: 671 GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730
G++ P + GP G GKT LA+A+A + T+ +R+ +E ++K
Sbjct: 178 GIAQPK----GVILYGPPGTGKTLLARAVAHH---TDCKFIRVSGAELVQK--------- 221
Query: 731 PPGYVGYEEGGQLTE----VVRRRPYAVILFDEIEK-----------AHSDVFNVFLQIL 775
Y+G EG ++ + R ++I DEI+ S+V L++L
Sbjct: 222 ---YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276
Query: 776 D--DGRVTDSQGRTVSFTNTVIIM 797
+ DG T + + TN + I+
Sbjct: 277 NQLDGFETSKNIKIIMATNRLDIL 300
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 271 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 123
Query: 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 383
F E + I+FIDEI V VG G LL M G
Sbjct: 124 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Query: 384 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 428
+ I + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 175 KDTAIVVMAATNRPDIL--DPALLRPGRFDRQIAIDAPDVKGREQILR 220
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 683 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 742
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 77 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 123
Query: 743 LTEVVRRRPYAVILFDEIE 761
L E +R ++ DEI+
Sbjct: 124 LFETAKRHAPCIVFIDEID 142
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 526 SLLKERQAQLTE---QWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS 582
SL+ +A+L E QW+ E + R+ +++ E+D L + ++E L A G
Sbjct: 233 SLITPNRAELREVVGQWKSEDDLRARVANLRAELDIDALLLTRSEEGMTLFSAG----GE 288
Query: 583 LN--ALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKL 632
L+ AL R++ + I++ +ML V D + ++ GI V KL
Sbjct: 289 LHAPALAREVFDVSGAGDTVIATVATMLGAGVPLVDAVVLANRAAGIVVGKL 340
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVP-QALMNRKLISLDM 319
++ G+PG GKTAI+ G+AQ + D P A+ ++ SL+M
Sbjct: 74 LIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSEIFSLEM 113
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GKT ++E +A R DV + + A+ +G K E +R
Sbjct: 54 ILWGPPGTGKTTLAEVIA-RYANADVER-----------ISAVTSGVKEIREAIER---- 97
Query: 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 392
++ + + ILF+DE+H DA P + G + IGATT
Sbjct: 98 ARQNRNAGRRTILFVDEVHRF-----NKSQQDA---FLPHIEDGTITFIGATT 142
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 271 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 123
Query: 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 383
F E + I+FIDEI V VG G LL M G
Sbjct: 124 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Query: 384 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 428
+ I + + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 175 KDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 683 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 742
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 77 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 123
Query: 743 LTEVVRRRPYAVILFDEIE 761
L E +R ++ DEI+
Sbjct: 124 LFETAKRHAPCIVFIDEID 142
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 271 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 44 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 99
Query: 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 383
F E + I+FIDEI V VG G LL M G
Sbjct: 100 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150
Query: 384 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 428
+ I + + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 151 KDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 196
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 683 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 742
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 53 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 99
Query: 743 LTEVVRRRPYAVILFDEIE 761
L E +R ++ DEI+
Sbjct: 100 LFETAKRHAPCIVFIDEID 118
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 339
+L G PG GKT I + +A + S+ +L +K+ GE E ++A+
Sbjct: 121 LLFGPPGTGKTLIGKCIASQ----------SGATFFSISASSLT--SKWVGEGEKMVRAL 168
Query: 340 LKEVTESEGQIILFIDEIHTVV 361
V + ++FIDEI +++
Sbjct: 169 FA-VARCQQPAVIFIDEIDSLL 189
>pdb|3P9Q|A Chain A, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|B Chain B, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|C Chain C, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|D Chain D, Structure Of I274c Variant Of E. Coli Kate
pdb|3PQ2|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ3|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ4|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ5|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ6|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ7|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ8|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
Length = 753
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 284 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 343
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 344 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 382
T +G ++ L +D + +V AG A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPAGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 383 GELRCIGAT 391
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 25 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 75
Query: 711 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 760
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 76 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 135
Query: 761 EKAHSDVFNVFLQILDD 777
FN L+ L++
Sbjct: 136 HMLSRHSFNALLKTLEE 152
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 651 VVGQDPAVKSVAEAI----QRSRAGLSDPHRPI--ASFMFMGPTGVGKTELAKALASYM 703
V+GQ+ A K +A A+ +R R G + + ++ + +GPTG GKT LA+ LA +
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 651 VVGQDPAVKSVAEAI----QRSRAGLSDPHRPI--ASFMFMGPTGVGKTELAKALASYM 703
V+GQ+ A K +A A+ +R R G + + ++ + +GPTG GKT LA+ LA +
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 8/165 (4%)
Query: 86 MAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFI 145
+AW +S + N ++ + + L+ LL++ +I D + +LE++ F+
Sbjct: 1666 VAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKIC--FIFDESNVLESS--FL 1721
Query: 146 QRQPKVL--GETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLF 203
+R +L GE G G + AL+ +E + G S E L FT R +
Sbjct: 1722 ERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVV 1781
Query: 204 RDFQISLPTL--KSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLT 246
+ P +SA + V+D E EAL + G + T
Sbjct: 1782 FTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFT 1826
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 8/165 (4%)
Query: 86 MAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFI 145
+AW +S + N ++ + + L+ LL++ +I D + +LE++ F+
Sbjct: 1666 VAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKIC--FIFDESNVLESS--FL 1721
Query: 146 QRQPKVL--GETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLF 203
+R +L GE G G + AL+ +E + G S E L FT R +
Sbjct: 1722 ERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVV 1781
Query: 204 RDFQISLPTL--KSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLT 246
+ P +SA + V+D E EAL + G + T
Sbjct: 1782 FTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFT 1826
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED 334
+K+N +LIG G GKT +++ LA+ + D+P I++ + A Y GE +
Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIP--------IAISDATSLTEAGYVGEDVE 119
Query: 335 RLKAVLKEVTESEGQI----ILFIDEIHTV 360
+ L + ++ Q I+FIDEI +
Sbjct: 120 NILTRLLQASDWNVQKAQKGIVFIDEIDKI 149
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEE 739
++ + +GPTG GKT +A+ LA ++ + + D + E GYVG +
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSLTE-----------AGYVGEDV 118
Query: 740 GGQLTEV-------VRRRPYAVILFDEIEK 762
LT + V++ ++ DEI+K
Sbjct: 119 ENILTRLLQASDWNVQKAQKGIVFIDEIDK 148
>pdb|3PE0|A Chain A, Structure Of The Central Region Of The Plakin Domain Of
Plectin
pdb|3PE0|B Chain B, Structure Of The Central Region Of The Plakin Domain Of
Plectin
Length = 283
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 571 DLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREE 611
D N K S +AL R+LE EK++ E ++G +LRE+
Sbjct: 38 DRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLRED 78
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 657 AVKSV-AEAIQRSRAGLSDP-----HRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A 709
A++S+ AE + + GL D HR + + GPTG GK+ ++ Y+ T+
Sbjct: 108 ALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH 167
Query: 710 LVRI-DMSEYMEKHAVS 725
++ I D EY+ KH S
Sbjct: 168 IITIEDPIEYVFKHKKS 184
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 276 KNNPVLIGEPGVGKTAISEGLAQRIVQG--DVPQALMNRKLISLDMGALIAGAKYRGEFE 333
K N L+G G GK+ I LAQ++ D Q + R D+G + G F
Sbjct: 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR--TGADVGWVFDLEGEEG-FR 60
Query: 334 DRLKAVLKEVTESEGQII 351
DR + V+ E+TE +G ++
Sbjct: 61 DREEKVINELTEKQGIVL 78
>pdb|2XCJ|A Chain A, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2XCJ|B Chain B, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2L49|A Chain A, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
pdb|2L49|B Chain B, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
Length = 99
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 703 MFNT-EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLT 744
M NT E +V + SEY+ + ++ L G P G + Y E G+ T
Sbjct: 1 MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRST 43
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHH----GVRISDSALVEAAILSD 455
+E+ PA+ Y P + D IS++R LRERY G+ +SD
Sbjct: 164 LEQHPAIRLVLVDYY--XPEI-DGISLVRXLRERYSKQQLAIIGISVSDK---------- 210
Query: 456 RYISGRFLPDKAIDLVDEA--AAKLKMEITSKPTALDEIN 493
R +S R+L A D +++ +L+ ++ AL++ N
Sbjct: 211 RGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQFN 250
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 18 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 68
Query: 711 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 760
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128
Query: 761 EKAHSDVFNVFLQILDD 777
FN L+ L++
Sbjct: 129 HMLSRHSFNALLKTLEE 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,092,871
Number of Sequences: 62578
Number of extensions: 1059654
Number of successful extensions: 3953
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3803
Number of HSP's gapped (non-prelim): 205
length of query: 973
length of database: 14,973,337
effective HSP length: 108
effective length of query: 865
effective length of database: 8,214,913
effective search space: 7105899745
effective search space used: 7105899745
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)