Query 002068
Match_columns 973
No_of_seqs 598 out of 5098
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 15:47:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 6E-136 1E-140 1187.9 81.3 781 82-953 1-783 (786)
2 TIGR03346 chaperone_ClpB ATP-d 100.0 2E-114 4E-119 1069.9 96.1 846 83-935 1-846 (852)
3 PRK10865 protein disaggregatio 100.0 1E-114 3E-119 1064.6 92.3 856 78-952 1-856 (857)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 1E-112 2E-117 1043.4 89.4 832 83-935 1-851 (852)
5 CHL00095 clpC Clp protease ATP 100.0 2E-111 4E-116 1041.6 88.9 802 79-955 1-813 (821)
6 KOG1051 Chaperone HSP104 and r 100.0 4E-106 9E-111 948.8 53.2 837 75-935 4-853 (898)
7 TIGR02639 ClpA ATP-dependent C 100.0 2E-103 5E-108 959.7 75.9 718 83-934 1-731 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 3E-102 6E-107 932.3 76.7 720 83-935 2-736 (758)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.3E-42 9.3E-47 378.6 29.4 503 253-922 188-741 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 1.5E-36 3.3E-41 341.0 34.5 412 274-919 216-657 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 5.4E-32 1.2E-36 332.9 37.2 457 252-920 175-678 (733)
12 KOG0736 Peroxisome assembly fa 100.0 2.8E-29 6.1E-34 284.4 35.7 457 256-921 402-902 (953)
13 TIGR00382 clpX endopeptidase C 100.0 4.2E-30 9E-35 288.2 25.8 278 640-935 68-402 (413)
14 PRK05342 clpX ATP-dependent pr 100.0 8.3E-29 1.8E-33 280.0 25.4 278 641-935 63-396 (412)
15 COG0466 Lon ATP-dependent Lon 100.0 2E-27 4.4E-32 270.0 31.5 343 526-923 188-565 (782)
16 KOG0735 AAA+-type ATPase [Post 100.0 1.7E-26 3.6E-31 259.4 31.8 429 275-920 430-891 (952)
17 TIGR00763 lon ATP-dependent pr 100.0 2.4E-26 5.2E-31 283.2 33.7 352 527-934 186-574 (775)
18 PRK10787 DNA-binding ATP-depen 99.9 1.3E-25 2.8E-30 273.2 31.4 352 527-935 188-573 (784)
19 PF07724 AAA_2: AAA domain (Cd 99.9 6.6E-26 1.4E-30 227.1 10.8 155 677-846 1-171 (171)
20 COG2204 AtoC Response regulato 99.9 3.1E-24 6.7E-29 240.8 20.5 274 599-911 94-371 (464)
21 KOG0741 AAA+-type ATPase [Post 99.9 2.8E-23 6.1E-28 226.6 26.9 174 269-459 249-441 (744)
22 COG2256 MGS1 ATPase related to 99.9 4.4E-24 9.5E-29 228.9 18.3 199 243-480 12-222 (436)
23 COG3829 RocR Transcriptional r 99.9 5.7E-24 1.2E-28 236.9 17.9 230 647-911 243-476 (560)
24 COG3604 FhlA Transcriptional r 99.9 5.9E-24 1.3E-28 233.2 16.5 229 649-913 223-455 (550)
25 KOG2004 Mitochondrial ATP-depe 99.9 2E-22 4.3E-27 227.5 28.1 265 613-923 376-653 (906)
26 COG0464 SpoVK ATPases of the A 99.9 1.5E-21 3.2E-26 231.2 30.8 430 269-919 11-467 (494)
27 COG1222 RPT1 ATP-dependent 26S 99.9 3.3E-22 7.2E-27 211.0 17.4 197 253-477 149-371 (406)
28 TIGR02974 phageshock_pspF psp 99.9 5.8E-22 1.2E-26 220.1 19.0 228 651-913 1-232 (329)
29 PRK05201 hslU ATP-dependent pr 99.9 1.2E-21 2.5E-26 216.1 19.4 260 641-935 7-423 (443)
30 COG1219 ClpX ATP-dependent pro 99.9 1.5E-21 3.3E-26 201.9 17.0 279 640-935 52-385 (408)
31 COG1223 Predicted ATPase (AAA+ 99.9 1.2E-21 2.6E-26 196.9 15.0 189 247-458 113-319 (368)
32 PF05496 RuvB_N: Holliday junc 99.9 1.7E-21 3.6E-26 197.2 15.1 190 242-475 11-226 (233)
33 PRK11608 pspF phage shock prot 99.9 1.4E-20 2.9E-25 209.5 20.5 230 648-912 5-238 (326)
34 TIGR01817 nifA Nif-specific re 99.9 1E-20 2.2E-25 225.6 20.0 228 648-912 195-426 (534)
35 TIGR00390 hslU ATP-dependent p 99.9 1.1E-20 2.3E-25 208.4 18.5 260 641-935 4-421 (441)
36 TIGR02329 propionate_PrpR prop 99.9 1.6E-20 3.4E-25 219.2 20.6 227 648-912 211-448 (526)
37 PRK15424 propionate catabolism 99.9 1.9E-20 4.1E-25 218.1 20.2 227 648-912 218-463 (538)
38 PRK05022 anaerobic nitric oxid 99.8 4.5E-20 9.8E-25 218.0 21.2 230 648-913 186-419 (509)
39 PF05496 RuvB_N: Holliday junc 99.8 7.3E-20 1.6E-24 185.3 19.4 182 646-892 21-210 (233)
40 COG0542 clpA ATP-binding subun 99.8 1.6E-19 3.6E-24 212.6 24.7 180 256-455 492-734 (786)
41 PRK10820 DNA-binding transcrip 99.8 5.7E-20 1.2E-24 216.9 20.9 230 647-912 202-435 (520)
42 KOG0738 AAA+-type ATPase [Post 99.8 1E-19 2.2E-24 193.0 20.3 186 252-460 209-419 (491)
43 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-19 3.8E-24 196.2 22.4 224 639-921 13-261 (287)
44 KOG0730 AAA+-type ATPase [Post 99.8 3.5E-20 7.6E-25 209.7 17.2 177 274-479 466-653 (693)
45 COG3283 TyrR Transcriptional r 99.8 8.5E-20 1.8E-24 191.2 18.3 225 647-911 202-429 (511)
46 CHL00195 ycf46 Ycf46; Provisio 99.8 7.1E-18 1.5E-22 194.8 35.7 168 681-914 261-444 (489)
47 KOG0733 Nuclear AAA ATPase (VC 99.8 1.2E-19 2.6E-24 201.8 19.3 164 274-459 543-719 (802)
48 KOG0734 AAA+-type ATPase conta 99.8 5.3E-20 1.2E-24 201.4 15.6 204 250-481 299-524 (752)
49 COG1221 PspF Transcriptional r 99.8 7.4E-20 1.6E-24 202.1 16.9 230 644-913 73-308 (403)
50 KOG0989 Replication factor C, 99.8 6.1E-20 1.3E-24 190.3 14.3 201 244-476 25-236 (346)
51 TIGR02639 ClpA ATP-dependent C 99.8 1.6E-18 3.4E-23 213.1 29.2 196 256-472 455-709 (731)
52 KOG0745 Putative ATP-dependent 99.8 2.6E-19 5.7E-24 192.1 18.4 224 680-917 227-511 (564)
53 KOG2028 ATPase related to the 99.8 7.5E-20 1.6E-24 191.8 14.0 186 241-456 124-328 (554)
54 PRK14956 DNA polymerase III su 99.8 2.2E-19 4.8E-24 203.2 18.4 204 243-477 6-229 (484)
55 PRK11388 DNA-binding transcrip 99.8 2.4E-19 5.1E-24 218.7 20.1 227 647-912 323-552 (638)
56 PRK15429 formate hydrogenlyase 99.8 6.1E-19 1.3E-23 216.2 21.8 228 649-912 376-607 (686)
57 CHL00095 clpC Clp protease ATP 99.8 7.2E-18 1.5E-22 209.6 31.3 205 255-477 509-784 (821)
58 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-18 2.5E-23 190.1 21.3 221 640-921 13-260 (284)
59 KOG0736 Peroxisome assembly fa 99.8 6.7E-19 1.4E-23 200.8 19.9 180 253-455 670-876 (953)
60 PRK07003 DNA polymerase III su 99.8 8.9E-19 1.9E-23 204.5 20.4 203 244-477 5-227 (830)
61 PF00158 Sigma54_activat: Sigm 99.8 2.3E-19 5E-24 179.3 13.1 163 651-845 1-164 (168)
62 PRK10923 glnG nitrogen regulat 99.8 1.5E-18 3.2E-23 204.9 20.0 229 649-913 138-370 (469)
63 KOG0739 AAA+-type ATPase [Post 99.8 5E-19 1.1E-23 181.2 13.4 186 253-460 131-337 (439)
64 PRK13342 recombination factor 99.8 1.6E-18 3.5E-23 199.8 19.4 196 244-477 1-203 (413)
65 TIGR02915 PEP_resp_reg putativ 99.8 4.8E-18 1E-22 199.3 23.1 268 606-912 98-370 (445)
66 PRK12323 DNA polymerase III su 99.8 1.1E-18 2.5E-23 201.4 16.8 204 243-477 4-232 (700)
67 COG1222 RPT1 ATP-dependent 26S 99.8 2.6E-18 5.5E-23 181.8 17.4 168 647-867 149-337 (406)
68 CHL00195 ycf46 Ycf46; Provisio 99.8 4.8E-18 1E-22 196.2 20.4 201 252-478 225-444 (489)
69 PRK14960 DNA polymerase III su 99.8 1.5E-17 3.3E-22 192.6 24.2 204 243-477 3-226 (702)
70 TIGR02881 spore_V_K stage V sp 99.8 5E-18 1.1E-22 183.9 19.2 212 254-478 5-238 (261)
71 PRK14949 DNA polymerase III su 99.8 4E-18 8.7E-23 202.9 19.5 203 243-476 4-226 (944)
72 TIGR02881 spore_V_K stage V sp 99.8 5.5E-18 1.2E-22 183.5 18.6 216 649-923 6-247 (261)
73 COG1223 Predicted ATPase (AAA+ 99.8 4.1E-18 9E-23 171.7 15.5 209 645-922 117-339 (368)
74 PRK07994 DNA polymerase III su 99.8 2.6E-17 5.7E-22 194.1 23.8 204 243-477 4-227 (647)
75 PRK13341 recombination factor 99.8 6.5E-18 1.4E-22 203.5 18.4 198 243-476 16-223 (725)
76 PRK11034 clpA ATP-dependent Cl 99.8 1.2E-16 2.5E-21 193.6 29.3 199 256-477 459-718 (758)
77 PLN00020 ribulose bisphosphate 99.8 8.7E-18 1.9E-22 181.0 17.0 157 273-453 145-327 (413)
78 PLN03025 replication factor C 99.8 1E-17 2.2E-22 186.9 17.3 194 244-473 2-203 (319)
79 PRK03992 proteasome-activating 99.8 2.7E-17 5.9E-22 187.5 20.4 198 253-478 129-352 (389)
80 PRK14964 DNA polymerase III su 99.8 2E-17 4.4E-22 189.8 19.3 204 244-478 2-225 (491)
81 PRK11361 acetoacetate metaboli 99.8 5.5E-17 1.2E-21 191.2 23.5 228 649-912 143-374 (457)
82 PRK14958 DNA polymerase III su 99.8 1.7E-17 3.6E-22 193.8 18.1 204 243-477 4-227 (509)
83 PRK14962 DNA polymerase III su 99.7 2.9E-17 6.3E-22 189.8 19.3 202 244-476 3-224 (472)
84 CHL00181 cbbX CbbX; Provisiona 99.7 7.5E-17 1.6E-21 175.6 21.5 189 276-477 59-253 (287)
85 TIGR01818 ntrC nitrogen regula 99.7 3.2E-17 7E-22 193.4 20.0 227 650-912 135-365 (463)
86 PRK14957 DNA polymerase III su 99.7 4.2E-17 9.1E-22 189.9 19.4 205 243-478 4-228 (546)
87 TIGR03346 chaperone_ClpB ATP-d 99.7 8.9E-16 1.9E-20 191.4 32.5 182 255-454 565-804 (852)
88 PRK14951 DNA polymerase III su 99.7 1.5E-16 3.3E-21 187.5 24.1 203 244-477 5-232 (618)
89 PTZ00454 26S protease regulato 99.7 3.7E-17 8E-22 185.1 18.2 198 253-478 143-366 (398)
90 PRK15115 response regulator Gl 99.7 3.7E-17 7.9E-22 191.8 18.9 227 650-912 135-365 (444)
91 PRK07764 DNA polymerase III su 99.7 3.8E-16 8.2E-21 190.4 28.0 203 244-477 4-228 (824)
92 PRK14952 DNA polymerase III su 99.7 8E-17 1.7E-21 189.4 20.4 202 245-477 3-226 (584)
93 COG2255 RuvB Holliday junction 99.7 3.4E-17 7.4E-22 168.2 14.6 191 245-479 16-232 (332)
94 PRK14961 DNA polymerase III su 99.7 1.3E-16 2.8E-21 180.8 20.9 204 243-477 4-227 (363)
95 COG2255 RuvB Holliday junction 99.7 1E-16 2.3E-21 164.6 17.7 182 646-892 23-212 (332)
96 COG0464 SpoVK ATPases of the A 99.7 1.1E-16 2.4E-21 189.7 20.5 182 274-481 274-465 (494)
97 TIGR02902 spore_lonB ATP-depen 99.7 8.9E-17 1.9E-21 189.7 19.5 213 648-912 64-310 (531)
98 PRK06645 DNA polymerase III su 99.7 1.1E-16 2.4E-21 185.4 19.4 205 243-478 9-237 (507)
99 TIGR01241 FtsH_fam ATP-depende 99.7 7.5E-17 1.6E-21 190.4 18.2 198 252-477 52-274 (495)
100 TIGR03689 pup_AAA proteasome A 99.7 5.8E-17 1.3E-21 186.7 16.6 177 249-432 176-379 (512)
101 KOG0731 AAA+-type ATPase conta 99.7 7.8E-17 1.7E-21 188.6 17.2 198 252-476 308-531 (774)
102 KOG0728 26S proteasome regulat 99.7 4.6E-17 1E-21 162.9 13.1 153 272-442 177-342 (404)
103 TIGR01243 CDC48 AAA family ATP 99.7 1.9E-16 4.2E-21 195.4 21.6 197 253-478 451-672 (733)
104 KOG0740 AAA+-type ATPase [Post 99.7 8.8E-17 1.9E-21 178.1 16.4 189 250-460 148-358 (428)
105 COG2256 MGS1 ATPase related to 99.7 4.6E-17 9.9E-22 175.3 13.5 186 648-909 23-215 (436)
106 TIGR02902 spore_lonB ATP-depen 99.7 1.4E-16 3E-21 188.1 18.7 214 241-478 51-312 (531)
107 PRK08691 DNA polymerase III su 99.7 1.3E-16 2.7E-21 187.0 17.7 204 243-477 4-227 (709)
108 PRK08451 DNA polymerase III su 99.7 2.8E-16 6E-21 182.0 20.3 204 244-478 3-226 (535)
109 KOG0737 AAA+-type ATPase [Post 99.7 9E-17 1.9E-21 171.4 14.8 184 253-460 90-298 (386)
110 PRK14959 DNA polymerase III su 99.7 1.8E-16 3.9E-21 185.3 18.7 202 243-475 4-225 (624)
111 TIGR02880 cbbX_cfxQ probable R 99.7 5.7E-16 1.2E-20 169.0 21.5 165 277-454 59-227 (284)
112 KOG0735 AAA+-type ATPase [Post 99.7 1.2E-16 2.5E-21 180.9 16.0 185 253-460 665-872 (952)
113 KOG0727 26S proteasome regulat 99.7 7.3E-17 1.6E-21 161.7 12.7 152 273-442 186-350 (408)
114 PRK14969 DNA polymerase III su 99.7 6.4E-16 1.4E-20 181.8 22.6 203 244-477 5-227 (527)
115 PTZ00361 26 proteosome regulat 99.7 1.3E-16 2.8E-21 181.7 16.0 201 250-478 178-404 (438)
116 CHL00176 ftsH cell division pr 99.7 4.7E-16 1E-20 185.3 20.6 198 252-477 180-402 (638)
117 COG1220 HslU ATP-dependent pro 99.7 6.2E-16 1.3E-20 161.7 18.3 259 642-935 8-424 (444)
118 PRK00080 ruvB Holliday junctio 99.7 5.4E-16 1.2E-20 173.8 18.7 189 246-478 16-230 (328)
119 PRK05563 DNA polymerase III su 99.7 7.1E-16 1.5E-20 182.7 20.4 203 244-477 5-227 (559)
120 TIGR03345 VI_ClpV1 type VI sec 99.7 3.2E-15 6.9E-20 184.9 26.9 182 256-455 567-810 (852)
121 KOG0991 Replication factor C, 99.7 1.2E-16 2.6E-21 158.7 11.3 205 239-477 11-221 (333)
122 PRK05896 DNA polymerase III su 99.7 8.2E-16 1.8E-20 178.9 19.8 204 243-477 4-227 (605)
123 PRK09111 DNA polymerase III su 99.7 8.2E-16 1.8E-20 181.9 19.7 204 243-477 12-240 (598)
124 COG2812 DnaX DNA polymerase II 99.7 8E-16 1.7E-20 175.8 18.9 205 243-478 4-228 (515)
125 PRK14965 DNA polymerase III su 99.7 6.3E-16 1.4E-20 184.0 18.7 204 244-478 5-228 (576)
126 PRK07133 DNA polymerase III su 99.7 1E-15 2.2E-20 181.4 20.1 203 243-476 6-225 (725)
127 KOG0652 26S proteasome regulat 99.7 2.3E-16 5E-21 158.8 12.2 182 253-457 169-376 (424)
128 PHA02544 44 clamp loader, smal 99.7 6.5E-16 1.4E-20 172.8 17.3 186 243-455 9-200 (316)
129 PRK14963 DNA polymerase III su 99.7 9.1E-16 2E-20 178.8 19.0 201 245-476 4-223 (504)
130 PRK10365 transcriptional regul 99.7 8.2E-16 1.8E-20 180.4 18.9 227 650-912 140-370 (441)
131 TIGR00635 ruvB Holliday juncti 99.7 1.6E-15 3.5E-20 168.8 20.0 181 253-477 2-208 (305)
132 COG3284 AcoR Transcriptional a 99.7 3.9E-16 8.4E-21 178.0 14.7 218 652-910 316-536 (606)
133 KOG0727 26S proteasome regulat 99.7 2.8E-15 6.1E-20 150.4 18.6 165 648-865 154-339 (408)
134 TIGR01242 26Sp45 26S proteasom 99.7 1.9E-15 4.1E-20 171.9 18.7 198 253-478 120-343 (364)
135 PRK14956 DNA polymerase III su 99.7 1.6E-15 3.4E-20 172.1 17.7 201 647-910 16-226 (484)
136 COG5271 MDN1 AAA ATPase contai 99.7 3.9E-13 8.4E-18 161.1 37.2 149 681-863 890-1045(4600)
137 KOG2170 ATPase of the AAA+ sup 99.7 1.8E-15 3.9E-20 156.8 15.8 245 639-909 72-340 (344)
138 PRK06647 DNA polymerase III su 99.7 3.1E-15 6.7E-20 176.5 20.1 204 243-477 4-227 (563)
139 KOG0734 AAA+-type ATPase conta 99.7 1.3E-15 2.7E-20 167.5 15.2 197 647-911 302-518 (752)
140 COG0465 HflB ATP-dependent Zn 99.6 9.6E-16 2.1E-20 176.9 14.5 198 252-477 147-369 (596)
141 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.3E-15 2.8E-20 189.8 16.4 179 274-480 1628-1859(2281)
142 PRK04195 replication factor C 99.6 1.5E-15 3.2E-20 178.7 16.1 183 244-457 3-195 (482)
143 KOG0726 26S proteasome regulat 99.6 1.2E-16 2.5E-21 163.4 5.8 174 249-440 179-378 (440)
144 KOG0989 Replication factor C, 99.6 7.4E-16 1.6E-20 160.1 11.7 176 648-892 35-219 (346)
145 PRK06305 DNA polymerase III su 99.6 5.5E-15 1.2E-19 170.9 20.1 204 243-477 5-229 (451)
146 PRK14953 DNA polymerase III su 99.6 5.8E-15 1.3E-19 171.6 20.0 204 243-477 4-227 (486)
147 PRK07003 DNA polymerase III su 99.6 3.3E-15 7.2E-20 174.9 17.9 199 647-909 14-223 (830)
148 PRK12402 replication factor C 99.6 6.6E-15 1.4E-19 166.4 19.8 204 244-475 4-231 (337)
149 COG5271 MDN1 AAA ATPase contai 99.6 9.1E-14 2E-18 166.3 29.3 153 681-866 1545-1704(4600)
150 PRK14955 DNA polymerase III su 99.6 3E-15 6.6E-20 171.5 16.9 205 243-478 4-236 (397)
151 KOG0729 26S proteasome regulat 99.6 1.2E-15 2.5E-20 154.2 11.4 162 253-432 175-362 (435)
152 PRK14954 DNA polymerase III su 99.6 7.5E-15 1.6E-19 174.0 20.1 204 244-478 5-236 (620)
153 PF01078 Mg_chelatase: Magnesi 99.6 4.5E-16 9.8E-21 157.3 8.1 186 648-856 2-206 (206)
154 KOG0732 AAA+-type ATPase conta 99.6 2.9E-15 6.2E-20 179.9 15.3 192 252-460 262-476 (1080)
155 TIGR02397 dnaX_nterm DNA polym 99.6 1.8E-14 3.9E-19 164.0 20.8 204 243-477 2-225 (355)
156 TIGR02903 spore_lon_C ATP-depe 99.6 1.1E-13 2.4E-18 166.0 27.9 202 647-896 152-388 (615)
157 PRK12323 DNA polymerase III su 99.6 4.5E-15 9.7E-20 171.9 14.9 186 647-892 14-214 (700)
158 PRK00080 ruvB Holliday junctio 99.6 1.7E-14 3.7E-19 161.7 19.3 182 647-893 23-212 (328)
159 TIGR02903 spore_lon_C ATP-depe 99.6 3E-14 6.5E-19 170.8 22.3 214 242-478 141-402 (615)
160 TIGR00635 ruvB Holliday juncti 99.6 1.7E-14 3.8E-19 160.5 18.8 180 648-892 3-190 (305)
161 PRK03992 proteasome-activating 99.6 1.3E-14 2.9E-19 165.4 17.8 204 646-914 128-352 (389)
162 PRK14971 DNA polymerase III su 99.6 2E-14 4.4E-19 171.5 19.8 204 243-477 5-229 (614)
163 PRK14949 DNA polymerase III su 99.6 1.5E-14 3.3E-19 172.7 18.4 199 647-909 14-223 (944)
164 PRK14948 DNA polymerase III su 99.6 2E-14 4.3E-19 171.4 19.4 201 243-474 4-226 (620)
165 PRK14960 DNA polymerase III su 99.6 1.5E-14 3.3E-19 168.0 17.8 199 647-909 13-222 (702)
166 PRK14970 DNA polymerase III su 99.6 3.8E-14 8.3E-19 161.7 20.8 204 243-477 5-216 (367)
167 PRK00440 rfc replication facto 99.6 1.8E-14 3.9E-19 161.5 17.8 199 243-477 5-210 (319)
168 TIGR02640 gas_vesic_GvpN gas v 99.6 5.2E-14 1.1E-18 152.3 20.7 168 656-864 5-197 (262)
169 PRK10865 protein disaggregatio 99.6 4E-13 8.8E-18 166.9 30.8 183 254-454 567-807 (857)
170 PRK14958 DNA polymerase III su 99.6 1.1E-14 2.3E-19 170.3 15.5 198 647-909 14-223 (509)
171 TIGR00763 lon ATP-dependent pr 99.6 1.9E-14 4.1E-19 178.1 17.1 185 256-461 321-541 (775)
172 PF00004 AAA: ATPase family as 99.6 1.8E-14 3.9E-19 139.0 13.4 121 279-416 1-131 (132)
173 PTZ00454 26S protease regulato 99.6 3.4E-14 7.4E-19 161.1 17.8 203 647-914 143-366 (398)
174 PRK14964 DNA polymerase III su 99.6 1.6E-14 3.4E-19 166.2 15.1 200 647-910 11-221 (491)
175 COG0466 Lon ATP-dependent Lon 99.6 2.7E-14 5.8E-19 163.8 16.8 185 256-461 324-544 (782)
176 PRK14950 DNA polymerase III su 99.6 2.1E-13 4.5E-18 163.5 24.6 202 244-476 5-227 (585)
177 PRK07994 DNA polymerase III su 99.6 3E-14 6.4E-19 168.5 16.5 184 647-892 14-209 (647)
178 PRK07764 DNA polymerase III su 99.6 3.5E-14 7.5E-19 173.4 16.9 200 647-911 13-226 (824)
179 PRK10733 hflB ATP-dependent me 99.6 3.8E-14 8.3E-19 171.2 17.0 177 275-479 184-373 (644)
180 PRK14962 DNA polymerase III su 99.6 5.8E-14 1.3E-18 162.5 17.6 198 647-909 12-221 (472)
181 PRK13531 regulatory ATPase Rav 99.6 9.9E-14 2.1E-18 156.9 18.5 235 637-923 8-269 (498)
182 KOG0728 26S proteasome regulat 99.6 2.1E-14 4.5E-19 144.1 11.6 166 648-866 146-332 (404)
183 KOG0742 AAA+-type ATPase [Post 99.6 4.7E-14 1E-18 150.6 14.8 168 253-438 353-535 (630)
184 PRK14952 DNA polymerase III su 99.6 8.9E-14 1.9E-18 163.8 18.8 199 647-910 11-223 (584)
185 PRK14957 DNA polymerase III su 99.6 8.8E-14 1.9E-18 162.3 18.4 202 647-911 14-225 (546)
186 PRK14961 DNA polymerase III su 99.5 5.7E-14 1.2E-18 159.2 16.3 201 647-910 14-224 (363)
187 PLN03025 replication factor C 99.5 6.6E-14 1.4E-18 156.2 16.3 183 648-908 12-202 (319)
188 PHA02244 ATPase-like protein 99.5 4.5E-13 9.8E-18 146.5 22.2 205 647-891 94-305 (383)
189 KOG0651 26S proteasome regulat 99.5 1.6E-14 3.4E-19 149.9 9.8 182 253-457 130-337 (388)
190 PRK13342 recombination factor 99.5 1E-13 2.2E-18 160.1 17.6 183 648-910 11-200 (413)
191 TIGR03689 pup_AAA proteasome A 99.5 9.3E-14 2E-18 160.4 17.1 164 648-866 181-379 (512)
192 PRK04132 replication factor C 99.5 2.7E-12 5.9E-17 155.6 29.9 165 681-909 566-734 (846)
193 TIGR01241 FtsH_fam ATP-depende 99.5 1.1E-13 2.4E-18 163.5 17.5 164 648-867 54-240 (495)
194 PLN00020 ribulose bisphosphate 99.5 1.6E-13 3.5E-18 148.4 17.1 160 676-892 146-327 (413)
195 KOG0738 AAA+-type ATPase [Post 99.5 5.9E-14 1.3E-18 149.6 13.4 208 648-920 211-438 (491)
196 TIGR00368 Mg chelatase-related 99.5 1.3E-13 2.9E-18 160.1 17.6 248 649-918 192-481 (499)
197 PRK13341 recombination factor 99.5 1E-13 2.3E-18 167.3 17.2 191 649-911 28-222 (725)
198 CHL00081 chlI Mg-protoporyphyr 99.5 1.3E-13 2.8E-18 152.3 16.4 235 647-923 15-307 (350)
199 CHL00176 ftsH cell division pr 99.5 1.5E-13 3.3E-18 164.0 18.2 167 648-867 182-368 (638)
200 PRK06645 DNA polymerase III su 99.5 1E-13 2.2E-18 161.0 16.1 200 647-910 19-233 (507)
201 KOG2004 Mitochondrial ATP-depe 99.5 8.8E-14 1.9E-18 158.3 15.0 178 256-454 412-625 (906)
202 PRK14951 DNA polymerase III su 99.5 9.9E-14 2.1E-18 163.9 16.1 199 647-908 14-227 (618)
203 PRK08691 DNA polymerase III su 99.5 4.7E-14 1E-18 165.6 13.2 200 647-911 14-225 (709)
204 PRK14959 DNA polymerase III su 99.5 1.7E-13 3.7E-18 160.6 17.4 197 647-908 14-222 (624)
205 PRK13407 bchI magnesium chelat 99.5 1.6E-13 3.5E-18 151.4 16.3 234 648-923 7-291 (334)
206 PRK07133 DNA polymerase III su 99.5 1.3E-13 2.9E-18 163.6 16.1 201 647-909 16-222 (725)
207 PRK07940 DNA polymerase III su 99.5 2E-13 4.4E-18 154.4 15.8 172 647-862 3-186 (394)
208 TIGR01242 26Sp45 26S proteasom 99.5 2.2E-13 4.7E-18 155.0 16.2 205 646-915 119-344 (364)
209 PRK05563 DNA polymerase III su 99.5 3.5E-13 7.6E-18 159.9 18.4 198 647-909 14-223 (559)
210 KOG0731 AAA+-type ATPase conta 99.5 2.2E-13 4.8E-18 159.9 16.3 165 647-867 309-497 (774)
211 COG2812 DnaX DNA polymerase II 99.5 7.3E-14 1.6E-18 159.8 11.6 202 647-911 14-225 (515)
212 TIGR00390 hslU ATP-dependent p 99.5 4.6E-13 1E-17 148.4 17.4 108 348-456 247-380 (441)
213 TIGR02442 Cob-chelat-sub cobal 99.5 3.2E-13 6.9E-18 163.2 17.6 227 647-922 2-288 (633)
214 PRK14965 DNA polymerase III su 99.5 1.5E-13 3.3E-18 163.7 14.6 199 647-909 14-223 (576)
215 COG0606 Predicted ATPase with 99.5 9.8E-14 2.1E-18 153.8 11.9 182 648-855 178-382 (490)
216 PRK08084 DNA replication initi 99.5 4.7E-13 1E-17 142.4 16.7 178 253-457 20-202 (235)
217 PTZ00361 26 proteosome regulat 99.5 3.2E-13 6.9E-18 154.1 16.2 167 647-866 181-368 (438)
218 PRK07940 DNA polymerase III su 99.5 3.8E-13 8.2E-18 152.2 16.6 175 253-457 3-206 (394)
219 PRK05201 hslU ATP-dependent pr 99.5 4.1E-13 8.9E-18 148.9 16.4 108 348-456 249-382 (443)
220 PRK08451 DNA polymerase III su 99.5 3.6E-13 7.7E-18 156.4 16.5 198 647-909 12-221 (535)
221 PRK09111 DNA polymerase III su 99.5 2.5E-13 5.4E-18 161.0 15.5 202 647-910 22-237 (598)
222 PRK14963 DNA polymerase III su 99.5 6E-13 1.3E-17 155.3 18.3 199 647-910 12-221 (504)
223 TIGR02640 gas_vesic_GvpN gas v 99.5 7.1E-13 1.5E-17 143.4 17.5 164 263-457 10-215 (262)
224 PHA02544 44 clamp loader, smal 99.5 1.1E-12 2.5E-17 146.6 19.6 177 648-895 20-201 (316)
225 COG1224 TIP49 DNA helicase TIP 99.5 1.5E-12 3.3E-17 137.7 18.7 103 752-894 292-394 (450)
226 PRK12402 replication factor C 99.5 7.3E-13 1.6E-17 149.7 17.9 197 648-909 14-229 (337)
227 PRK05342 clpX ATP-dependent pr 99.5 1.1E-12 2.4E-17 149.1 19.2 187 257-454 73-357 (412)
228 PRK14953 DNA polymerase III su 99.5 3.8E-13 8.3E-18 156.5 15.6 200 647-910 14-224 (486)
229 PRK10787 DNA-binding ATP-depen 99.5 6.6E-13 1.4E-17 162.6 18.1 184 256-461 323-542 (784)
230 PTZ00112 origin recognition co 99.5 8.2E-13 1.8E-17 155.0 17.5 210 255-477 755-988 (1164)
231 KOG2035 Replication factor C, 99.5 5.3E-12 1.2E-16 129.3 21.1 208 245-477 3-235 (351)
232 PRK06305 DNA polymerase III su 99.5 5.6E-13 1.2E-17 154.3 16.0 199 647-909 15-225 (451)
233 TIGR02030 BchI-ChlI magnesium 99.5 5.8E-13 1.2E-17 147.4 15.0 235 647-923 2-294 (337)
234 PRK05896 DNA polymerase III su 99.5 9.2E-13 2E-17 153.6 17.3 198 647-909 14-223 (605)
235 PRK14969 DNA polymerase III su 99.5 5.7E-13 1.2E-17 157.0 15.9 200 647-909 14-223 (527)
236 TIGR01650 PD_CobS cobaltochela 99.5 7.6E-13 1.6E-17 143.7 15.4 155 681-864 66-232 (327)
237 KOG0739 AAA+-type ATPase [Post 99.5 1.8E-13 3.8E-18 140.9 9.6 206 648-915 132-351 (439)
238 KOG0726 26S proteasome regulat 99.5 1.4E-13 3.1E-18 141.1 8.7 166 646-864 182-368 (440)
239 PF06068 TIP49: TIP49 C-termin 99.5 7.8E-13 1.7E-17 142.8 14.7 102 752-893 279-380 (398)
240 PRK06647 DNA polymerase III su 99.4 1.6E-12 3.4E-17 153.7 18.0 199 647-909 14-223 (563)
241 TIGR02928 orc1/cdc6 family rep 99.4 2.9E-12 6.2E-17 146.5 19.7 211 255-478 15-254 (365)
242 PF07728 AAA_5: AAA domain (dy 99.4 3.2E-13 6.9E-18 131.8 9.9 113 681-802 1-124 (139)
243 COG0714 MoxR-like ATPases [Gen 99.4 6.6E-13 1.4E-17 148.9 13.8 174 640-860 15-197 (329)
244 KOG0744 AAA+-type ATPase [Post 99.4 3.6E-13 7.8E-18 140.5 10.5 148 279-434 180-343 (423)
245 CHL00206 ycf2 Ycf2; Provisiona 99.4 7.7E-13 1.7E-17 165.6 14.9 144 681-863 1632-1815(2281)
246 KOG0742 AAA+-type ATPase [Post 99.4 1.4E-10 3.1E-15 124.3 30.0 143 674-869 379-532 (630)
247 KOG0652 26S proteasome regulat 99.4 5.2E-13 1.1E-17 134.9 10.9 164 648-866 170-356 (424)
248 PRK06893 DNA replication initi 99.4 1.8E-12 3.9E-17 137.4 15.5 179 251-457 12-196 (229)
249 KOG2028 ATPase related to the 99.4 9.8E-13 2.1E-17 138.9 13.1 153 681-892 164-325 (554)
250 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.2E-12 2.6E-17 139.0 14.0 162 681-910 40-205 (226)
251 PRK14955 DNA polymerase III su 99.4 1.6E-12 3.5E-17 149.1 15.9 199 647-909 14-231 (397)
252 PRK14954 DNA polymerase III su 99.4 1.1E-12 2.4E-17 155.6 14.9 199 647-909 14-231 (620)
253 PRK04195 replication factor C 99.4 2E-12 4.3E-17 152.3 16.8 174 649-893 14-192 (482)
254 TIGR02397 dnaX_nterm DNA polym 99.4 3.1E-12 6.7E-17 145.7 17.7 198 647-909 12-221 (355)
255 PRK09112 DNA polymerase III su 99.4 7.1E-12 1.5E-16 140.1 19.7 201 249-474 17-244 (351)
256 KOG0990 Replication factor C, 99.4 6.3E-12 1.4E-16 131.9 17.9 208 239-478 25-240 (360)
257 TIGR00602 rad24 checkpoint pro 99.4 2.4E-12 5.2E-17 152.5 16.4 223 243-476 72-329 (637)
258 PRK08903 DnaA regulatory inact 99.4 6E-12 1.3E-16 133.8 17.2 158 681-910 44-203 (227)
259 TIGR00382 clpX endopeptidase C 99.4 8.1E-12 1.8E-16 141.1 19.0 187 257-454 79-363 (413)
260 PRK05642 DNA replication initi 99.4 6.3E-12 1.4E-16 133.6 16.9 177 253-457 17-201 (234)
261 KOG0729 26S proteasome regulat 99.4 7.5E-13 1.6E-17 134.1 8.9 163 648-863 176-359 (435)
262 PF14532 Sigma54_activ_2: Sigm 99.4 5.9E-13 1.3E-17 129.6 7.9 137 652-852 1-138 (138)
263 PF00004 AAA: ATPase family as 99.4 2E-12 4.3E-17 124.8 10.8 116 682-850 1-131 (132)
264 PRK07471 DNA polymerase III su 99.4 1.2E-11 2.6E-16 139.0 18.7 197 249-472 13-240 (365)
265 PRK06893 DNA replication initi 99.4 7.5E-12 1.6E-16 132.7 16.0 163 681-910 41-207 (229)
266 TIGR02031 BchD-ChlD magnesium 99.4 3.7E-12 7.9E-17 152.2 15.2 209 679-923 16-243 (589)
267 PRK14970 DNA polymerase III su 99.4 9.7E-12 2.1E-16 142.0 18.1 188 647-910 15-213 (367)
268 PRK14971 DNA polymerase III su 99.4 7.8E-12 1.7E-16 149.5 17.9 199 647-909 15-225 (614)
269 PRK00411 cdc6 cell division co 99.4 2.9E-11 6.2E-16 139.8 22.1 208 255-478 30-262 (394)
270 PRK09862 putative ATP-dependen 99.4 1E-11 2.2E-16 143.6 17.2 186 649-856 191-392 (506)
271 PRK14948 DNA polymerase III su 99.4 8.1E-12 1.8E-16 149.3 16.8 197 647-909 14-225 (620)
272 PRK14950 DNA polymerase III su 99.4 6.2E-12 1.4E-16 150.8 16.0 199 647-909 14-224 (585)
273 PTZ00112 origin recognition co 99.4 1.1E-11 2.5E-16 145.6 17.1 217 646-911 752-986 (1164)
274 PRK00440 rfc replication facto 99.4 1.6E-11 3.4E-16 137.7 17.8 183 648-908 16-205 (319)
275 smart00350 MCM minichromosome 99.4 2.2E-11 4.8E-16 143.9 19.5 222 639-892 193-449 (509)
276 PRK11331 5-methylcytosine-spec 99.4 2.2E-11 4.8E-16 136.9 18.4 231 649-921 175-443 (459)
277 PRK13407 bchI magnesium chelat 99.3 6.9E-12 1.5E-16 138.5 13.8 214 251-480 4-288 (334)
278 COG0465 HflB ATP-dependent Zn 99.3 8.2E-12 1.8E-16 144.7 14.7 166 647-865 148-333 (596)
279 PRK08084 DNA replication initi 99.3 2.3E-11 4.9E-16 129.5 17.1 163 681-910 47-213 (235)
280 PRK08903 DnaA regulatory inact 99.3 3.4E-11 7.3E-16 128.0 18.3 171 251-455 14-190 (227)
281 PRK00149 dnaA chromosomal repl 99.3 4.2E-11 9.1E-16 140.1 20.0 186 253-456 120-314 (450)
282 PTZ00111 DNA replication licen 99.3 4.2E-11 9.1E-16 144.3 19.9 194 639-860 440-652 (915)
283 PF07726 AAA_3: ATPase family 99.3 3.4E-12 7.3E-17 118.4 7.9 106 681-801 1-112 (131)
284 TIGR00764 lon_rel lon-related 99.3 1.5E-11 3.2E-16 147.2 15.4 117 744-892 210-342 (608)
285 TIGR03420 DnaA_homol_Hda DnaA 99.3 5E-11 1.1E-15 126.6 17.7 188 253-475 13-206 (226)
286 PRK14086 dnaA chromosomal repl 99.3 6.6E-11 1.4E-15 138.3 20.1 161 277-455 315-479 (617)
287 PRK08727 hypothetical protein; 99.3 7.9E-11 1.7E-15 125.2 19.0 188 253-474 17-208 (233)
288 PRK10733 hflB ATP-dependent me 99.3 2.9E-11 6.2E-16 146.4 17.5 163 649-867 152-337 (644)
289 PRK05642 DNA replication initi 99.3 5.7E-11 1.2E-15 126.3 17.5 163 681-911 47-213 (234)
290 TIGR02928 orc1/cdc6 family rep 99.3 4.9E-11 1.1E-15 136.3 17.9 217 647-910 13-250 (365)
291 PRK13765 ATP-dependent proteas 99.3 2.4E-11 5.2E-16 144.5 15.6 120 744-892 219-351 (637)
292 TIGR01650 PD_CobS cobaltochela 99.3 2.3E-11 5E-16 132.2 13.8 169 260-454 50-252 (327)
293 PF05621 TniB: Bacterial TniB 99.3 8.5E-11 1.8E-15 125.3 17.8 213 257-479 36-270 (302)
294 PRK09112 DNA polymerase III su 99.3 3.5E-11 7.5E-16 134.6 15.6 180 648-892 22-229 (351)
295 PRK08727 hypothetical protein; 99.3 4.9E-11 1.1E-15 126.7 16.0 163 681-911 43-209 (233)
296 KOG0737 AAA+-type ATPase [Post 99.3 2.5E-11 5.4E-16 130.2 13.5 210 648-922 91-319 (386)
297 COG1224 TIP49 DNA helicase TIP 99.3 3.1E-10 6.8E-15 120.4 21.5 95 349-455 292-394 (450)
298 PRK05564 DNA polymerase III su 99.3 6.4E-11 1.4E-15 132.0 17.6 174 253-455 2-181 (313)
299 PF05673 DUF815: Protein of un 99.3 1.5E-10 3.2E-15 119.7 18.6 190 253-473 25-244 (249)
300 PRK12422 chromosomal replicati 99.3 1E-10 2.2E-15 135.0 19.4 174 277-475 142-318 (445)
301 KOG0743 AAA+-type ATPase [Post 99.3 2.5E-11 5.5E-16 133.8 13.4 152 681-891 237-415 (457)
302 KOG0744 AAA+-type ATPase [Post 99.3 6.5E-12 1.4E-16 131.2 8.1 145 681-870 179-345 (423)
303 PRK06620 hypothetical protein; 99.3 4.2E-11 9E-16 125.1 14.3 135 277-457 45-182 (214)
304 CHL00081 chlI Mg-protoporyphyr 99.3 8.8E-11 1.9E-15 129.9 17.3 223 243-481 4-305 (350)
305 PRK07399 DNA polymerase III su 99.3 2.3E-11 5E-16 134.2 12.6 168 647-865 2-195 (314)
306 COG1474 CDC6 Cdc6-related prot 99.3 2.1E-10 4.7E-15 128.7 20.5 209 256-481 18-248 (366)
307 COG4650 RtcR Sigma54-dependent 99.3 2E-11 4.3E-16 125.5 10.9 228 646-909 181-421 (531)
308 PRK07399 DNA polymerase III su 99.3 1.1E-10 2.4E-15 128.8 17.5 195 253-473 2-224 (314)
309 smart00763 AAA_PrkA PrkA AAA d 99.3 1.2E-10 2.5E-15 128.0 17.5 209 650-892 52-348 (361)
310 TIGR00678 holB DNA polymerase 99.3 1.1E-10 2.5E-15 120.1 16.0 159 268-457 5-184 (188)
311 PRK00411 cdc6 cell division co 99.3 1.4E-10 3E-15 134.1 18.5 214 647-909 28-257 (394)
312 PRK09087 hypothetical protein; 99.3 9.4E-11 2E-15 123.6 15.6 164 253-456 19-187 (226)
313 PRK13531 regulatory ATPase Rav 99.3 4.2E-10 9.2E-15 127.7 21.6 213 257-490 22-278 (498)
314 TIGR00362 DnaA chromosomal rep 99.3 2.1E-10 4.5E-15 132.7 19.6 186 253-456 108-302 (405)
315 PRK05564 DNA polymerase III su 99.2 9.5E-11 2.1E-15 130.6 16.0 158 648-864 3-164 (313)
316 PRK14088 dnaA chromosomal repl 99.2 2.7E-10 5.9E-15 131.9 20.3 187 253-456 103-297 (440)
317 KOG0743 AAA+-type ATPase [Post 99.2 6.2E-11 1.4E-15 130.7 13.9 156 251-432 197-384 (457)
318 COG3829 RocR Transcriptional r 99.2 3.8E-11 8.2E-16 135.2 12.3 182 251-453 241-459 (560)
319 TIGR00362 DnaA chromosomal rep 99.2 7.2E-11 1.6E-15 136.5 15.2 173 680-911 137-315 (405)
320 TIGR00678 holB DNA polymerase 99.2 1.5E-10 3.2E-15 119.2 15.9 156 680-892 15-180 (188)
321 TIGR02030 BchI-ChlI magnesium 99.2 7.3E-11 1.6E-15 130.8 14.4 214 254-481 3-292 (337)
322 PRK08058 DNA polymerase III su 99.2 1.4E-10 2.9E-15 129.7 16.6 182 254-472 4-206 (329)
323 COG1474 CDC6 Cdc6-related prot 99.2 1.5E-10 3.3E-15 129.9 16.8 216 647-909 15-240 (366)
324 COG1239 ChlI Mg-chelatase subu 99.2 5.8E-11 1.3E-15 130.4 13.0 208 646-894 14-281 (423)
325 PRK04132 replication factor C 99.2 1.1E-10 2.5E-15 141.7 16.5 163 278-476 566-737 (846)
326 PF13177 DNA_pol3_delta2: DNA 99.2 3.1E-11 6.7E-16 120.6 9.7 151 653-853 1-162 (162)
327 PRK07471 DNA polymerase III su 99.2 3.2E-11 6.8E-16 135.6 10.8 164 648-865 18-213 (365)
328 COG1219 ClpX ATP-dependent pro 99.2 2E-10 4.3E-15 120.2 15.6 170 275-455 96-347 (408)
329 PF00308 Bac_DnaA: Bacterial d 99.2 8.2E-11 1.8E-15 123.6 13.1 172 681-911 36-213 (219)
330 PRK12422 chromosomal replicati 99.2 1.9E-10 4E-15 132.9 17.2 173 680-911 142-318 (445)
331 PRK14087 dnaA chromosomal repl 99.2 5.9E-10 1.3E-14 129.2 21.0 189 252-456 112-311 (450)
332 KOG1942 DNA helicase, TBP-inte 99.2 1.1E-10 2.4E-15 120.2 13.1 113 752-908 297-409 (456)
333 PF06068 TIP49: TIP49 C-termin 99.2 3E-10 6.5E-15 123.1 16.3 95 349-455 279-381 (398)
334 PF00308 Bac_DnaA: Bacterial d 99.2 1.5E-10 3.2E-15 121.6 13.7 186 253-456 6-200 (219)
335 COG0470 HolB ATPase involved i 99.2 3.2E-10 7E-15 127.4 16.7 151 256-423 2-173 (325)
336 KOG0651 26S proteasome regulat 99.2 4.6E-11 1E-15 124.5 8.7 156 648-856 131-307 (388)
337 PRK08058 DNA polymerase III su 99.2 1.8E-10 3.9E-15 128.7 14.1 163 648-863 4-180 (329)
338 KOG0991 Replication factor C, 99.2 8.1E-11 1.8E-15 117.6 9.8 170 648-892 26-203 (333)
339 PRK00149 dnaA chromosomal repl 99.2 1.6E-10 3.5E-15 135.2 14.0 173 680-911 149-327 (450)
340 COG0714 MoxR-like ATPases [Gen 99.2 1.7E-10 3.8E-15 129.4 13.3 152 256-427 25-199 (329)
341 TIGR02974 phageshock_pspF psp 99.2 3.1E-10 6.8E-15 126.5 14.8 178 257-454 1-214 (329)
342 PRK14087 dnaA chromosomal repl 99.2 3.2E-10 6.9E-15 131.5 15.3 176 680-911 142-324 (450)
343 PF10431 ClpB_D2-small: C-term 99.2 6.9E-11 1.5E-15 103.5 7.5 81 852-932 1-81 (81)
344 PF07724 AAA_2: AAA domain (Cd 99.2 7.5E-11 1.6E-15 118.5 8.6 111 275-395 2-131 (171)
345 KOG1969 DNA replication checkp 99.2 2E-10 4.3E-15 132.0 12.8 186 241-459 257-505 (877)
346 COG1220 HslU ATP-dependent pro 99.2 5.7E-10 1.2E-14 117.6 15.1 107 348-455 250-382 (444)
347 COG3604 FhlA Transcriptional r 99.1 7.6E-11 1.7E-15 130.8 8.8 183 253-454 221-437 (550)
348 cd00009 AAA The AAA+ (ATPases 99.1 3.3E-10 7.2E-15 110.8 12.4 150 653-851 2-151 (151)
349 PF01078 Mg_chelatase: Magnesi 99.1 2.5E-11 5.4E-16 123.0 4.1 134 253-397 1-162 (206)
350 TIGR01817 nifA Nif-specific re 99.1 3E-10 6.5E-15 136.0 14.1 187 249-454 190-409 (534)
351 PRK11608 pspF phage shock prot 99.1 8.9E-10 1.9E-14 123.0 16.9 182 253-454 4-221 (326)
352 PRK14086 dnaA chromosomal repl 99.1 3.8E-10 8.3E-15 132.0 14.2 172 681-911 316-493 (617)
353 KOG0745 Putative ATP-dependent 99.1 1.1E-09 2.3E-14 119.0 16.0 170 275-455 225-488 (564)
354 KOG0732 AAA+-type ATPase conta 99.1 5.7E-10 1.2E-14 135.0 15.4 203 648-914 264-489 (1080)
355 COG1221 PspF Transcriptional r 99.1 2.9E-10 6.3E-15 126.5 12.0 204 251-479 74-310 (403)
356 PRK14088 dnaA chromosomal repl 99.1 2.5E-10 5.5E-15 132.2 12.1 173 681-911 132-310 (440)
357 PF13177 DNA_pol3_delta2: DNA 99.1 1E-09 2.2E-14 109.7 14.7 143 259-419 1-162 (162)
358 PRK05707 DNA polymerase III su 99.1 2.3E-09 5E-14 119.0 18.9 166 275-472 21-205 (328)
359 KOG0740 AAA+-type ATPase [Post 99.1 3.5E-10 7.6E-15 126.1 12.4 215 642-917 146-374 (428)
360 KOG2680 DNA helicase TIP49, TB 99.1 8.4E-10 1.8E-14 114.2 14.1 103 752-894 289-391 (454)
361 COG2204 AtoC Response regulato 99.1 2.4E-10 5.2E-15 129.4 11.0 183 252-454 138-355 (464)
362 PRK11331 5-methylcytosine-spec 99.1 3.7E-10 8E-15 127.2 12.3 152 254-418 174-358 (459)
363 TIGR02442 Cob-chelat-sub cobal 99.1 7.5E-10 1.6E-14 134.1 15.3 162 254-429 3-212 (633)
364 cd00009 AAA The AAA+ (ATPases 99.1 8.1E-10 1.8E-14 108.0 12.6 145 258-416 1-150 (151)
365 PF05673 DUF815: Protein of un 99.1 5.3E-09 1.2E-13 108.3 18.9 178 649-867 27-209 (249)
366 PF00158 Sigma54_activat: Sigm 99.1 4.6E-10 1E-14 112.5 10.6 138 257-414 1-166 (168)
367 PRK08769 DNA polymerase III su 99.1 4.3E-09 9.4E-14 115.7 19.1 183 261-472 10-210 (319)
368 PRK15424 propionate catabolism 99.1 1.8E-09 3.9E-14 126.7 16.7 183 252-447 216-432 (538)
369 PHA02244 ATPase-like protein 99.1 9.1E-10 2E-14 120.9 13.3 140 257-421 98-264 (383)
370 TIGR02329 propionate_PrpR prop 99.1 1.2E-09 2.5E-14 128.5 14.4 178 252-449 209-419 (526)
371 PRK06871 DNA polymerase III su 99.1 1.1E-09 2.4E-14 120.5 13.0 161 651-864 4-178 (325)
372 COG0593 DnaA ATPase involved i 99.1 7.4E-09 1.6E-13 115.8 19.5 162 276-455 113-277 (408)
373 COG0470 HolB ATPase involved i 99.1 1.1E-09 2.4E-14 123.0 13.1 144 650-854 2-170 (325)
374 KOG2035 Replication factor C, 99.1 2.6E-09 5.6E-14 109.9 14.2 171 681-908 36-227 (351)
375 PRK15429 formate hydrogenlyase 99.0 3.2E-09 7E-14 130.7 17.9 189 245-453 364-589 (686)
376 PRK05707 DNA polymerase III su 99.0 6.8E-10 1.5E-14 123.2 10.7 139 681-864 24-177 (328)
377 PRK08769 DNA polymerase III su 99.0 1.3E-09 2.9E-14 119.8 12.5 163 650-863 5-183 (319)
378 PF07728 AAA_5: AAA domain (dy 99.0 2.4E-10 5.1E-15 111.5 5.9 111 278-410 1-139 (139)
379 PRK11388 DNA-binding transcrip 99.0 1.7E-09 3.6E-14 132.5 14.3 180 252-454 322-535 (638)
380 PRK07993 DNA polymerase III su 99.0 1.2E-08 2.6E-13 113.7 19.5 179 261-472 8-206 (334)
381 PRK13406 bchD magnesium chelat 99.0 2.3E-09 5.1E-14 126.9 14.1 193 679-908 25-224 (584)
382 PRK05022 anaerobic nitric oxid 99.0 1.1E-08 2.3E-13 121.6 19.7 182 253-454 185-401 (509)
383 PRK06964 DNA polymerase III su 99.0 1.9E-09 4E-14 119.6 12.0 141 681-863 23-202 (342)
384 PRK06090 DNA polymerase III su 99.0 4.2E-09 9.2E-14 115.7 14.5 159 651-863 5-178 (319)
385 TIGR00764 lon_rel lon-related 99.0 4.5E-09 9.7E-14 126.0 15.8 119 348-477 217-370 (608)
386 PF01637 Arch_ATPase: Archaeal 99.0 9.3E-10 2E-14 117.1 9.1 198 257-457 1-227 (234)
387 PRK10820 DNA-binding transcrip 99.0 4.5E-09 9.6E-14 124.8 15.5 183 251-453 200-417 (520)
388 KOG0741 AAA+-type ATPase [Post 99.0 1E-09 2.2E-14 121.6 8.7 192 681-935 258-471 (744)
389 PRK07993 DNA polymerase III su 99.0 3.8E-09 8.3E-14 117.6 13.4 162 651-863 4-178 (334)
390 PRK06620 hypothetical protein; 99.0 5.9E-09 1.3E-13 109.0 13.3 144 681-909 46-192 (214)
391 COG2607 Predicted ATPase (AAA+ 99.0 2.7E-08 5.9E-13 100.8 17.3 193 254-477 59-280 (287)
392 COG0606 Predicted ATPase with 99.0 1.4E-09 3E-14 121.3 8.8 147 252-422 176-383 (490)
393 PRK06871 DNA polymerase III su 99.0 2.8E-08 6.1E-13 109.5 18.9 148 263-429 10-177 (325)
394 PRK09087 hypothetical protein; 99.0 1.1E-08 2.4E-13 107.9 15.0 151 681-909 46-198 (226)
395 smart00763 AAA_PrkA PrkA AAA d 98.9 1.1E-08 2.4E-13 112.6 15.0 97 349-454 237-349 (361)
396 PRK06964 DNA polymerase III su 98.9 1.6E-08 3.6E-13 112.1 16.5 151 264-428 10-201 (342)
397 TIGR03015 pepcterm_ATPase puta 98.9 1.2E-07 2.6E-12 103.6 22.9 181 274-476 41-244 (269)
398 PF07726 AAA_3: ATPase family 98.9 1.2E-10 2.6E-15 108.1 -1.0 108 278-411 1-130 (131)
399 COG1241 MCM2 Predicted ATPase 98.9 1.1E-08 2.5E-13 120.9 15.1 257 642-926 279-582 (682)
400 KOG0478 DNA replication licens 98.9 1.3E-08 2.9E-13 116.3 14.3 227 639-894 419-674 (804)
401 smart00350 MCM minichromosome 98.9 1.4E-08 2.9E-13 120.3 14.6 202 255-479 203-454 (509)
402 COG1239 ChlI Mg-chelatase subu 98.9 3.1E-08 6.6E-13 109.3 15.9 203 254-481 16-286 (423)
403 TIGR03015 pepcterm_ATPase puta 98.9 9.2E-08 2E-12 104.4 19.2 171 681-892 45-227 (269)
404 PF00493 MCM: MCM2/3/5 family 98.9 2.6E-09 5.7E-14 119.3 6.9 227 640-892 15-273 (331)
405 PRK06090 DNA polymerase III su 98.9 5E-08 1.1E-12 107.3 16.3 149 262-428 10-177 (319)
406 TIGR00368 Mg chelatase-related 98.9 1.5E-08 3.3E-13 118.2 12.8 154 253-422 190-395 (499)
407 KOG0480 DNA replication licens 98.8 3.8E-08 8.2E-13 111.9 15.2 253 638-918 334-625 (764)
408 PRK12377 putative replication 98.8 7.7E-09 1.7E-13 109.9 9.2 106 681-806 103-210 (248)
409 KOG1942 DNA helicase, TBP-inte 98.8 3.2E-08 6.8E-13 102.4 12.3 95 349-455 297-400 (456)
410 PF02861 Clp_N: Clp amino term 98.8 7.4E-09 1.6E-13 82.6 5.8 53 94-146 1-53 (53)
411 TIGR02915 PEP_resp_reg putativ 98.8 7.8E-08 1.7E-12 113.1 16.8 186 253-454 137-353 (445)
412 PTZ00111 DNA replication licen 98.8 6E-08 1.3E-12 117.5 15.8 163 255-433 450-659 (915)
413 PRK05917 DNA polymerase III su 98.8 3.1E-08 6.6E-13 106.7 11.9 144 656-853 4-155 (290)
414 PRK08116 hypothetical protein; 98.8 2.7E-08 5.8E-13 107.8 11.3 108 681-806 116-225 (268)
415 PRK15455 PrkA family serine pr 98.8 8E-08 1.7E-12 110.4 14.6 190 647-865 74-346 (644)
416 COG0593 DnaA ATPase involved i 98.8 5.7E-08 1.2E-12 108.8 13.2 174 678-911 112-291 (408)
417 TIGR02031 BchD-ChlD magnesium 98.8 6.1E-08 1.3E-12 116.2 14.5 186 274-481 14-241 (589)
418 PRK13765 ATP-dependent proteas 98.8 5.3E-08 1.1E-12 116.3 13.6 121 348-479 226-381 (637)
419 PRK08699 DNA polymerase III su 98.8 1.3E-07 2.8E-12 105.1 15.7 152 263-428 9-182 (325)
420 PRK08699 DNA polymerase III su 98.8 2.1E-08 4.6E-13 111.2 9.4 160 652-863 4-183 (325)
421 PF06309 Torsin: Torsin; Inte 98.8 2.4E-08 5.2E-13 92.8 8.0 66 639-706 15-80 (127)
422 PF12775 AAA_7: P-loop contain 98.7 1.5E-08 3.3E-13 109.7 7.7 149 266-434 24-196 (272)
423 PRK10923 glnG nitrogen regulat 98.7 7.8E-08 1.7E-12 113.8 14.0 179 253-454 136-352 (469)
424 PF01695 IstB_IS21: IstB-like 98.7 1E-08 2.2E-13 104.0 5.2 107 681-809 49-157 (178)
425 KOG1051 Chaperone HSP104 and r 98.7 5E-08 1.1E-12 118.0 11.8 121 256-394 563-711 (898)
426 KOG0990 Replication factor C, 98.7 3.4E-08 7.4E-13 104.2 8.4 154 649-866 41-204 (360)
427 KOG1969 DNA replication checkp 98.7 2E-07 4.4E-12 107.7 15.2 152 681-892 328-499 (877)
428 COG2607 Predicted ATPase (AAA+ 98.7 2.4E-07 5.3E-12 94.0 13.8 177 649-867 60-241 (287)
429 PRK08181 transposase; Validate 98.7 9.7E-08 2.1E-12 102.8 11.9 106 681-808 108-215 (269)
430 smart00382 AAA ATPases associa 98.7 8.5E-08 1.9E-12 92.7 10.4 130 276-417 2-146 (148)
431 PF14532 Sigma54_activ_2: Sigm 98.7 1.2E-08 2.6E-13 99.4 4.1 130 258-419 1-137 (138)
432 PRK06526 transposase; Provisio 98.7 2.2E-08 4.9E-13 107.2 6.4 105 681-808 100-207 (254)
433 TIGR00602 rad24 checkpoint pro 98.7 2.4E-07 5.3E-12 110.4 15.3 52 648-703 83-134 (637)
434 PRK07276 DNA polymerase III su 98.7 9.1E-08 2E-12 103.5 10.4 155 653-862 6-172 (290)
435 PF13173 AAA_14: AAA domain 98.7 8.8E-08 1.9E-12 92.0 9.2 123 277-422 3-126 (128)
436 smart00382 AAA ATPases associa 98.7 7.4E-08 1.6E-12 93.2 8.9 118 681-801 4-125 (148)
437 KOG2227 Pre-initiation complex 98.6 3.2E-07 7E-12 101.5 13.5 219 647-912 148-377 (529)
438 PRK15115 response regulator Gl 98.6 3.8E-07 8.3E-12 107.2 15.3 176 256-454 135-348 (444)
439 PF12775 AAA_7: P-loop contain 98.6 2.3E-07 5E-12 100.5 12.3 156 681-869 35-197 (272)
440 PRK08116 hypothetical protein; 98.6 3.1E-07 6.8E-12 99.5 13.1 131 277-420 115-251 (268)
441 PRK05917 DNA polymerase III su 98.6 1.2E-06 2.7E-11 94.4 17.2 156 264-456 6-173 (290)
442 PRK11361 acetoacetate metaboli 98.6 4.7E-07 1E-11 106.9 14.8 182 253-454 141-357 (457)
443 PRK09862 putative ATP-dependen 98.6 7.2E-08 1.6E-12 112.0 7.4 150 253-422 189-392 (506)
444 PRK12377 putative replication 98.6 1E-07 2.2E-12 101.3 8.0 114 276-410 101-222 (248)
445 PRK05818 DNA polymerase III su 98.6 2.4E-07 5.3E-12 97.6 10.5 128 680-852 8-147 (261)
446 PF12774 AAA_6: Hydrolytic ATP 98.5 3.9E-06 8.4E-11 88.5 18.1 132 682-861 35-176 (231)
447 TIGR01818 ntrC nitrogen regula 98.5 1.4E-06 3E-11 103.1 16.3 184 254-453 133-347 (463)
448 PRK07132 DNA polymerase III su 98.5 2.3E-06 5E-11 93.6 16.3 143 656-863 3-160 (299)
449 PRK07952 DNA replication prote 98.5 3.4E-07 7.4E-12 97.1 9.0 107 681-806 101-209 (244)
450 PRK07952 DNA replication prote 98.5 3.8E-07 8.3E-12 96.8 9.2 123 277-419 100-235 (244)
451 PRK06835 DNA replication prote 98.5 5.9E-07 1.3E-11 99.7 11.1 107 681-806 185-293 (329)
452 KOG2680 DNA helicase TIP49, TB 98.5 1.2E-06 2.6E-11 91.3 12.2 95 349-455 289-391 (454)
453 PF13173 AAA_14: AAA domain 98.5 9.9E-07 2.1E-11 84.6 10.8 121 681-857 4-127 (128)
454 COG1484 DnaC DNA replication p 98.5 3.6E-07 7.8E-12 98.0 8.4 107 681-808 107-215 (254)
455 PRK09183 transposase/IS protei 98.4 1.9E-07 4.2E-12 100.6 5.8 105 681-808 104-212 (259)
456 PRK08181 transposase; Validate 98.4 1.2E-06 2.7E-11 94.3 10.8 130 275-419 105-243 (269)
457 PF03215 Rad17: Rad17 cell cyc 98.4 3E-06 6.5E-11 99.4 14.8 202 243-458 7-257 (519)
458 KOG1808 AAA ATPase containing 98.4 2.5E-06 5.4E-11 109.7 15.1 134 274-428 438-596 (1856)
459 PRK10365 transcriptional regul 98.4 3.7E-06 8E-11 98.8 15.3 174 256-454 140-353 (441)
460 PRK07276 DNA polymerase III su 98.4 4.8E-06 1E-10 90.3 14.8 145 260-427 7-171 (290)
461 PF13401 AAA_22: AAA domain; P 98.4 8.5E-07 1.8E-11 85.3 7.2 97 681-777 6-114 (131)
462 PRK07132 DNA polymerase III su 98.4 7.7E-06 1.7E-10 89.5 15.4 172 263-471 4-185 (299)
463 PF01637 Arch_ATPase: Archaeal 98.3 2.8E-06 6.1E-11 90.2 11.4 189 652-892 2-223 (234)
464 PRK06835 DNA replication prote 98.3 2.7E-06 5.8E-11 94.4 11.2 127 276-419 183-318 (329)
465 PF08298 AAA_PrkA: PrkA AAA do 98.3 7.1E-06 1.5E-10 89.7 14.1 207 649-891 61-344 (358)
466 KOG2227 Pre-initiation complex 98.3 2E-05 4.4E-10 87.7 17.5 204 255-477 150-378 (529)
467 PF13401 AAA_22: AAA domain; P 98.3 2E-06 4.4E-11 82.6 8.9 109 275-393 3-125 (131)
468 KOG0481 DNA replication licens 98.3 1.6E-06 3.4E-11 96.3 8.6 189 643-856 325-518 (729)
469 PF05729 NACHT: NACHT domain 98.3 7.3E-06 1.6E-10 82.0 12.6 146 279-432 3-164 (166)
470 PHA00729 NTP-binding motif con 98.3 3.5E-06 7.6E-11 87.4 10.1 127 265-429 6-138 (226)
471 PRK06921 hypothetical protein; 98.3 8.1E-07 1.8E-11 96.1 5.3 104 681-807 119-230 (266)
472 PRK08939 primosomal protein Dn 98.3 2.5E-06 5.4E-11 94.0 9.1 107 681-808 158-267 (306)
473 COG1484 DnaC DNA replication p 98.3 2.7E-06 5.8E-11 91.4 9.1 103 275-394 104-209 (254)
474 PRK15455 PrkA family serine pr 98.3 6.1E-06 1.3E-10 95.3 12.4 52 251-302 72-129 (644)
475 PRK05818 DNA polymerase III su 98.3 9.7E-06 2.1E-10 85.6 12.8 126 274-419 5-148 (261)
476 KOG1970 Checkpoint RAD17-RFC c 98.2 1.7E-05 3.7E-10 89.7 14.7 180 242-435 69-284 (634)
477 PF13191 AAA_16: AAA ATPase do 98.2 1.3E-06 2.9E-11 89.3 5.6 48 256-303 1-51 (185)
478 COG3283 TyrR Transcriptional r 98.2 5.1E-06 1.1E-10 88.8 9.9 179 253-453 202-412 (511)
479 PRK06526 transposase; Provisio 98.2 2.1E-06 4.6E-11 92.0 7.1 124 275-421 97-237 (254)
480 KOG1514 Origin recognition com 98.2 4.2E-05 9.2E-10 89.0 17.7 213 647-913 394-627 (767)
481 COG1618 Predicted nucleotide k 98.2 2.8E-05 6E-10 74.7 13.4 143 276-434 5-175 (179)
482 COG3284 AcoR Transcriptional a 98.2 2.8E-06 6.1E-11 98.2 8.0 177 258-453 316-520 (606)
483 COG5245 DYN1 Dynein, heavy cha 98.2 0.00023 4.9E-09 87.9 23.6 140 274-432 1492-1659(3164)
484 KOG1514 Origin recognition com 98.2 2.4E-05 5.2E-10 91.0 14.7 181 257-452 398-605 (767)
485 PF00910 RNA_helicase: RNA hel 98.2 2.4E-06 5.3E-11 79.1 5.6 93 682-801 1-107 (107)
486 KOG0477 DNA replication licens 98.2 1.9E-06 4E-11 97.8 5.5 150 643-801 443-598 (854)
487 PRK13406 bchD magnesium chelat 98.2 2.6E-05 5.7E-10 92.9 15.2 181 275-481 24-233 (584)
488 PF05729 NACHT: NACHT domain 98.1 1.3E-05 2.9E-10 80.1 10.9 145 681-866 2-164 (166)
489 PF01695 IstB_IS21: IstB-like 98.1 2.2E-06 4.9E-11 86.9 5.0 107 274-395 45-151 (178)
490 PRK09183 transposase/IS protei 98.1 7.7E-06 1.7E-10 88.3 9.1 131 275-419 101-241 (259)
491 PF03215 Rad17: Rad17 cell cyc 98.1 0.00011 2.5E-09 86.3 19.4 205 651-892 21-252 (519)
492 PF12774 AAA_6: Hydrolytic ATP 98.1 1.7E-05 3.6E-10 83.7 11.0 129 276-426 32-175 (231)
493 KOG2228 Origin recognition com 98.1 2.9E-05 6.4E-10 82.9 12.5 168 255-432 24-220 (408)
494 KOG3595 Dyneins, heavy chain [ 98.1 0.00022 4.7E-09 94.1 23.4 137 277-433 128-288 (1395)
495 PRK06921 hypothetical protein; 98.1 1.6E-05 3.5E-10 86.0 10.9 122 275-410 116-240 (266)
496 PRK08939 primosomal protein Dn 98.0 7.5E-06 1.6E-10 90.2 7.0 105 275-395 155-262 (306)
497 PF05621 TniB: Bacterial TniB 98.0 0.00026 5.6E-09 76.2 18.2 125 648-775 33-172 (302)
498 PF00931 NB-ARC: NB-ARC domain 98.0 2.7E-05 5.9E-10 85.8 11.2 150 260-432 1-171 (287)
499 PRK14700 recombination factor 98.0 1.4E-05 2.9E-10 85.6 7.9 90 378-476 2-93 (300)
500 KOG0478 DNA replication licens 98.0 5.2E-05 1.1E-09 87.7 13.0 186 256-459 430-658 (804)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-136 Score=1187.91 Aligned_cols=781 Identities=58% Similarity=0.951 Sum_probs=724.8
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCccCC
Q 002068 82 DFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLG 161 (973)
Q Consensus 82 ~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s 161 (973)
+||++++.+|..|+.+|+.++|++|++||||++|+.++++. .+|..+|++++.++..+...+++.|...+. +.+|
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~s 75 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFIDKLPKVLGS---PYLS 75 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCCCHHHHHHHHHHHHhccCCCCCC---CCCC
Confidence 58999999999999999999999999999999999998888 999999999999999999999999987663 7889
Q ss_pred hhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhccccccCCCCCchhHHHHh
Q 002068 162 RDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEK 240 (973)
Q Consensus 162 ~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~ 240 (973)
+.++++++.|+.+|+..+++||+++|+|++++.++ +.+.++|...+++...+.+.+..+.++....+..++.....|.+
T Consensus 76 ~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 155 (786)
T COG0542 76 PRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEK 155 (786)
T ss_pred HHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHHHhcccccCCcccccchhhHHH
Confidence 99999999999999999999999999999999887 78889999999999999888888888776666667777789999
Q ss_pred hhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
|+.+|++.++.+++||+|||+++|++++++|+|++++|++|+|+||||||++|++||+++.+|+||+.|++.+++++|++
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc-hhhHHHHHhhhhcCCCEEEEEccCchHHHhh
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG-AMDAGNLLKPMLGRGELRCIGATTLDEYRKY 399 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~-~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~ 399 (973)
++++|++|+|+||++++.+++++...+ ++||||||+|++.++|...| ++|+.|+|||+|.+|.++||||||..+|++|
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 999999999999999999999999876 99999999999999998876 6999999999999999999999999999999
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhh
Q 002068 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~ 479 (973)
++.|+||.|||++|.+.+|+.+++..||+++.++|+.+|+|.|+|+++.+++.+|.|||++|++||||+|++|+||++.+
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 480 MEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRV 559 (973)
Q Consensus 480 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~ 559 (973)
+... .|..++.+++++.+++.++.++.+|.+ .+++..+.....+++
T Consensus 395 l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~----------------------------~~~k~~~~~~~~~~~----- 440 (786)
T COG0542 395 LEID-KPEELDELERELAQLEIEKEALEREQD----------------------------EKEKKLIDEIIKLKE----- 440 (786)
T ss_pred hccc-CCcchhHHHHHHHHHHHHHHHHhhhhh----------------------------HHHHHHHHHHHHHhh-----
Confidence 9988 999999999999999999988766644 011111111111110
Q ss_pred hHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHHHH
Q 002068 560 NLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREK 639 (973)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~ 639 (973)
+.++.+++++.. .|+.++|++++++|+|+|+.++...+.+.
T Consensus 441 ---------------------~~~~~~~~~~~~------------------~v~~~~Ia~vv~~~TgIPv~~l~~~e~~k 481 (786)
T COG0542 441 ---------------------GRIPELEKELEA------------------EVDEDDIAEVVARWTGIPVAKLLEDEKEK 481 (786)
T ss_pred ---------------------hhhhhHHHHHhh------------------ccCHHHHHHHHHHHHCCChhhhchhhHHH
Confidence 112222222211 18999999999999999999999999999
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
+.++++.+.++|+||++|+..|.++++++++|+.+|++|+|++||.||+|||||+||++||+.+|+++.+++++|||+|+
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM 561 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEec
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 799 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ts 799 (973)
++|++++|+|+|||||||.+||++++++++.|++||+||||||+||+|+|.|||+||+|+++|+.|++|+|+|++|||||
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCce
Q 002068 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKM 879 (973)
Q Consensus 800 N~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l 879 (973)
|.|++.+.+.... .....++.+.+.++..+++.|+|||++|+|.+|+|.|++.+++.+|+..++.++.+++..+++.+
T Consensus 642 N~Gs~~i~~~~~~--~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l 719 (786)
T COG0542 642 NAGSEEILRDADG--DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITL 719 (786)
T ss_pred ccchHHHHhhccc--cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 9999988775432 11123567788899999999999999999999999999999999999999999999999989999
Q ss_pred ecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCCCcEEEEE
Q 002068 880 QVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRR 953 (973)
Q Consensus 880 ~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~ 953 (973)
.+++++.++|++.+|++.||||+|+|.|++.|.++||+.++.|.+.+|.+|.|+++ ++++.|..
T Consensus 720 ~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~v~v~~~----------~~~~~~~~ 783 (786)
T COG0542 720 ELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVD----------DEKIKFVS 783 (786)
T ss_pred EECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEec----------CceEEEee
Confidence 99999999999999999999999999999999999999999999999999999998 46777754
No 2
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.8e-114 Score=1069.91 Aligned_cols=846 Identities=63% Similarity=0.998 Sum_probs=778.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCccCCh
Q 002068 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGR 162 (973)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (973)
||++++++|..|+.+|++++|++|+|||||+||+.++++.+.++|+++|+|++.++..+...+++.|...+.+..++||+
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~~~~~~~~~~S~ 80 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKVSGPGGQVYLSP 80 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccCCCCCCCCCcCH
Confidence 79999999999999999999999999999999999999999999999999999999999999987665333224588999
Q ss_pred hHHHHHHHHHHHHHHhCCCccChhHHHHHhhcccccccchhhccCCChhHHHHHHHHHhccccccCCCCCchhHHHHhhh
Q 002068 163 DLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYG 242 (973)
Q Consensus 163 ~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (973)
.++++|+.|+.+|..+|+++|+++|||+||+++++.+.++|..+|++.+.+++.+....++.......++..++.|++|+
T Consensus 81 ~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (852)
T TIGR03346 81 ELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQKVTSANAEDQYEALEKYA 160 (852)
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHhhccCccccccccccchhHHHHHh
Confidence 99999999999999999999999999999999874456799999999999988887654322222222234457999999
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~ 322 (973)
+||++++++++++++|||++++++++++|+++.++|+||+||||||||++|+++++.+..+.+|..+.+.+++.++++.+
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhcc
Q 002068 323 IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 402 (973)
Q Consensus 323 ~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~ 402 (973)
.+|.+|+|+++.+++.+++.+....+++||||||+|.+.+++...+..++.|+|++++++|.+.|||+||.++|++++..
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~ 320 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhc
Confidence 99999999999999999999876556899999999999988777777889999999999999999999999999999999
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhhc
Q 002068 403 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEI 482 (973)
Q Consensus 403 d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~~ 482 (973)
|+++.|||+.|.++.|+.+++..||+.+..+|+.+|++.++++++.+++.+|.+|+++|++||||+|+||+||+++++..
T Consensus 321 d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~ 400 (852)
T TIGR03346 321 DAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400 (852)
T ss_pred CHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002068 483 TSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLE 562 (973)
Q Consensus 483 ~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~ 562 (973)
...|..++.+++++.+++.++..+.++.+..+..+++++++++.+++.++..+...|..+...+.....+.+++..++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (852)
T TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLE 480 (852)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999977766667788999999999999999999999999999998888888888777777
Q ss_pred HHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHH
Q 002068 563 IQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLH 642 (973)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~ 642 (973)
....++.+++.++.+++|+.++.+++.+........+.. +..+....|+.++|+.+++.|+|+|+..+...+.+++.+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~ 558 (852)
T TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEET--KPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLH 558 (852)
T ss_pred HHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcc--ccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 788888999999999999999988888776665543321 234566789999999999999999999999999999999
Q ss_pred HHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh
Q 002068 643 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 722 (973)
Q Consensus 643 l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~ 722 (973)
+++.+.+.|+||+.+++.|..++...+.|+.+|++|.+++||+||||||||++|++||+.+++++.+++++||++|.+.+
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCC
Q 002068 723 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (973)
Q Consensus 723 ~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 802 (973)
..++++|.++||+||.+++.+++.++..|++|||||||+++++++++.|+++|++|+++|+.|+.++|+|++||||||.|
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 002068 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVT 882 (973)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~ 882 (973)
++.+.+..+.. .+..+...+.+.+...|+|+|++|||.+|.|.|++.+++.+|+...+..+.+++..+++.+.++
T Consensus 719 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~ 793 (852)
T TIGR03346 719 SQFIQELAGGD-----DYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELS 793 (852)
T ss_pred hHhHhhhcccc-----cHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 88766533211 1345666777888999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 883 DAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 883 ~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
++++++|++++|++.+|+|+|++.|++.+..+||+.++.|.+.+|+++.|+++
T Consensus 794 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~ 846 (852)
T TIGR03346 794 DAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDVE 846 (852)
T ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999999999987
No 3
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=1.4e-114 Score=1064.58 Aligned_cols=856 Identities=53% Similarity=0.873 Sum_probs=784.2
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002068 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (973)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (973)
||+++||+.++.+|..|+.+|++++|.+|++||||++|+.++++.+..+|+++|+++..++..+...+++.|...+....
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999887753322245
Q ss_pred ccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhcccccccchhhccCCChhHHHHHHHHHhccccccCCCCCchhHH
Q 002068 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEA 237 (973)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 237 (973)
+++|+.++++|+.|+.+|..+|+.+|+++|+|++++.+++..+.+|..++++.+.+.+.+..+.++.......++...+.
T Consensus 81 ~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
T PRK10865 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160 (857)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccchhH
Confidence 78999999999999999999999999999999999988754456899999999999888766544322222222344578
Q ss_pred HHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 238 LEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 238 l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
|++|++||++++++++++|+|||+.++++++++|+++.++|+||+||||||||++|++||+.+..+.+|..+.+.+++.+
T Consensus 161 l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHH
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR 397 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~ 397 (973)
+++.+.+|.+|+|+++++++.+|+++....+++||||||+|.+.+++.+.+..+++++|++.+++|.++||||||.++|+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 99999999999999999999999998765678999999999999988888889999999999999999999999999999
Q ss_pred hhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh
Q 002068 398 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 398 ~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~ 477 (973)
+++.+|+++.|||+.|.++.|+.+++..||+.+..+|+.+|++.++++++..++.++.||++++++||+|++++|.+++.
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 478 LKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEID 557 (973)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~ 557 (973)
+++.....|..++.+++.+..++.+...++.+.+..+..+++.+++++..++.++..+.++|..++..+........+++
T Consensus 401 ~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele 480 (857)
T PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480 (857)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99998999999999999999999999999888777788899999999999999999999999999999988888888888
Q ss_pred HHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHH
Q 002068 558 RVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSER 637 (973)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~ 637 (973)
.++.++.++++.+++..+++++++.++.+.+++......- .....++...|+.++|+.+++.|+|+|+.++...+.
T Consensus 481 ~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~ 556 (857)
T PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE----GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESER 556 (857)
T ss_pred HHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh----ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHH
Confidence 8888889999999999999999999988888765543321 122346677899999999999999999999999999
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 638 ~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.++..+++.+++.|+||+.++..|..++...+.|+.+|++|.+++||+||||||||++|++||+.+++.+.+++++||++
T Consensus 557 ~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se 636 (857)
T PRK10865 557 EKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE 636 (857)
T ss_pred HHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEE
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 797 (973)
|.+.+..++++|.++||+|+..++.+++.++..|++|||||||+++++++++.|+++|++|+++|+.|++++|.|++||+
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 99888899999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM 877 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~ 877 (973)
|||.+++.+.+..+ . ..+..+.+.+...+...|+|+|++|+|.+|.|.|++.+++.+|++.++.++..++...++
T Consensus 717 TSN~g~~~~~~~~~--~---~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi 791 (857)
T PRK10865 717 TSNLGSDLIQERFG--E---LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGY 791 (857)
T ss_pred eCCcchHHHHHhcc--c---cchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999876654322 1 123445566667788899999999999999999999999999999999999888887888
Q ss_pred ceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCCCcEEEE
Q 002068 878 KMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFR 952 (973)
Q Consensus 878 ~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~ 952 (973)
.+.++++++++|++++|++.||||+|+|.|++.+.++||+.++.|.+.+|++|.|+++ +++++|.
T Consensus 792 ~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~----------~~~~~~~ 856 (857)
T PRK10865 792 EIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVN----------DDRIVAV 856 (857)
T ss_pred cCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEE----------CCEEeee
Confidence 8999999999999999999999999999999999999999999999999999999997 5677764
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.1e-112 Score=1043.39 Aligned_cols=832 Identities=41% Similarity=0.671 Sum_probs=730.4
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCccCCh
Q 002068 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGR 162 (973)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (973)
+|++++++|..|+.+|++++|++|+|||||+||+.++++.+..+|+.+|++++.++.++...+.+.|...+ ..+++|+
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~~~~--~~~~~S~ 78 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNT--RTPVFSP 78 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCC--CCCCcCH
Confidence 68999999999999999999999999999999999988999999999999999999999999987665322 3578999
Q ss_pred hHHHHHHHHHH-HHHHhCCCccChhHHHHHhhcccc---cccchhhcc-CCChhHHHHHHHHH-hccc-cc---cCCC--
Q 002068 163 DLEALIQRSRE-YKKEYGDSFVSVEHLVLGFTQDQR---FGKQLFRDF-QISLPTLKSAIEAI-RGRQ-SV---IDQD-- 230 (973)
Q Consensus 163 ~~~~~l~~A~~-~a~~~g~~~I~~~hlllall~~~~---~~~~~L~~~-gi~~~~l~~~i~~~-~~~~-~~---~~~~-- 230 (973)
.++++|+.|+. .+..+|+.+|+++|||+||++++. .+..++..+ |++.+.+.+.+..+ .+.. .. ....
T Consensus 79 ~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (852)
T TIGR03345 79 HLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAEASAAAADAGPA 158 (852)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCccccccccccccc
Confidence 99999999997 456799999999999999998763 444577777 99999998887654 2211 11 0000
Q ss_pred --CC--chhHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCC
Q 002068 231 --PE--GKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP 306 (973)
Q Consensus 231 --~~--~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p 306 (973)
.. ...+.|++|++||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|
T Consensus 159 ~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~ 238 (852)
T TIGR03345 159 AAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238 (852)
T ss_pred cccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 11 23478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEE
Q 002068 307 QALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELR 386 (973)
Q Consensus 307 ~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~ 386 (973)
..+.+.+++.++++.+.+|.+++|+++.+++.+++++...+.++||||||+|.+.+++...+..++.|+|++.+++|.++
T Consensus 239 ~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~ 318 (852)
T TIGR03345 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR 318 (852)
T ss_pred ccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE
Confidence 99999999999999999999999999999999999997666789999999999999887777788999999999999999
Q ss_pred EEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 387 CIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 387 iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
||||||.++|++++++|++|.|||+.|.|++|+.+++.+||+.+...|+.+|++.++++++.+++.+|.||+++|++|||
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 467 AIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTD--KASKDRLNRLEAELSLLKERQAQLTEQWEHEKT 544 (973)
Q Consensus 467 a~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~--~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~ 544 (973)
|+|+||+||+++++...+.|..++.+++++.+++.+...+.++.. .....+...+++++..++++++.+...|..++.
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999889999999999999999999988866543 123346677888899999999999999999886
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhh
Q 002068 545 VMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKW 624 (973)
Q Consensus 545 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~ 624 (973)
..........+.... ..+ -....++.+..++.++.++.... .. ..+....|+..+|++++++|
T Consensus 479 ~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~v~~~~i~~vv~~~ 541 (852)
T TIGR03345 479 LVEAILALRAELEAD--------ADA-PADDDAALRAQLAELEAALASAQ-------GE-EPLVFPEVDAQAVAEVVADW 541 (852)
T ss_pred HHHHHHHHHHHhhhc--------ccc-hhhhhHHHHHHHHHHHHHHHHHh-------hc-cccccceecHHHHHHHHHHH
Confidence 554332222111100 000 01122233334444444333222 11 23556789999999999999
Q ss_pred hCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc
Q 002068 625 TGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 625 ~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
+|+|+.++...+.+++.++++.|.+.|+||++++..|.+++..++.|+.+|++|.+++||+||||||||++|++||+.++
T Consensus 542 tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 542 TGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred HCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC
Q 002068 705 NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 784 (973)
Q Consensus 705 ~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~ 784 (973)
+....++.+||++|.+.+++++++|+++||+||.++|.+++.++++|++||+|||||++++++++.|+++|++|+++|+.
T Consensus 622 ~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 622 GGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred CCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 785 g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
|+.++|.|++||||||.+.+.+.+...... .....+.+...+.+.+...|+|+|++|++ +|+|.||+.+++.+|+...
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPE-TAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcc-cCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999988766432111 11124566778888999999999999996 9999999999999999999
Q ss_pred HHHHHHHHHhc-CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 865 LDRVQKRIADR-KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 865 l~~~~~~~~~~-~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
+.++.+++..+ ++.+.++++++++|++.+|++.+|+|+|+|.|++.|..+||+.++.+.........|++.
T Consensus 780 L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~~ 851 (852)
T TIGR03345 780 LDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEEe
Confidence 99999888776 899999999999999999999999999999999999999999999999988888888764
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1.6e-111 Score=1041.55 Aligned_cols=802 Identities=48% Similarity=0.796 Sum_probs=715.9
Q ss_pred ChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCc
Q 002068 79 TQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGS 158 (973)
Q Consensus 79 ~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (973)
||++||++++++|..|+.+|++++|++|+|||||+||+.++++.+.++|+++|++++.++..+...+++.+.... ..+
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~~~~--~~~ 78 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGFVA--VEI 78 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc--ccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999877553221 358
Q ss_pred cCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhcccc--ccC-CCCCch
Q 002068 159 MLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQS--VID-QDPEGK 234 (973)
Q Consensus 159 ~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~~~--~~~-~~~~~~ 234 (973)
+||+.++++|+.|+.+|..+++++|+++|||+||++++ +.+.++|..+|++...++..+........ ... ......
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e~~~~~~~~~~~ 158 (821)
T CHL00095 79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIEAILGAEQSRSK 158 (821)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999999999999999999999999999999876 67778999999999999888876443211 100 111223
Q ss_pred hHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeE
Q 002068 235 YEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (973)
Q Consensus 235 ~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (973)
.+.|++|+++|+++++.++++|++||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..+.+.++
T Consensus 159 ~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i 238 (821)
T CHL00095 159 TPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLV 238 (821)
T ss_pred chHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 315 ~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
+++|++.+.+|.+|+|+++++++.+++++.. .+++||||||+|.+++++...+..++.++|++.+.+|.++|||+||.+
T Consensus 239 ~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 239 ITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred EEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 9999999999999999999999999999965 457999999999999888777778999999999999999999999999
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a 474 (973)
+|+++++.|++|.+||+.|.++.|+.++...|++.+...|+.++++.++++++..++.+|.+|+++|++|+||++++|+|
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a 397 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEA 397 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 475 AAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKE 554 (973)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~ 554 (973)
|+++++.....|..++.+++++.+++.++..+.++.+. .+...++.+...++.++..+...|..+..
T Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 464 (821)
T CHL00095 398 GSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF---ETAKQLRDREMEVRAQIAAIIQSKKTEEE---------- 464 (821)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------
Confidence 99999988888999999999999888877766544321 11122222222333333333333333210
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccH
Q 002068 555 EIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQ 634 (973)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~ 634 (973)
.......|+..+|+++++.|+|+|+..+..
T Consensus 465 --------------------------------------------------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~ 494 (821)
T CHL00095 465 --------------------------------------------------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTK 494 (821)
T ss_pred --------------------------------------------------ccccCCccCHHHHHHHHHHHHCCCchhhch
Confidence 011235689999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 635 SEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 635 ~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
.+.+++..+++.|.+.|+||++++..|..++...+.|+.+|++|.+++||+||||||||++|++||+.+|++..+++++|
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d 574 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD 574 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 715 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 715 ~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
|++|.+.+.+++++|+++||+||.+++.+++.++..|++||+|||||++++++++.|+++||+|+++|+.|+.++|+|++
T Consensus 575 ~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred chhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhhhhccC---CCCCC----ccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 795 IIMTSNVGSQYILNMD---DETFP----KETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~---~~~~~----~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
||||||.|.+.+.... ++... .+..++.+.+.+.+.+.+.|+|+|++|+|.+|+|.||+.+++.+|+...+.+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999988665321 11110 1224667788888889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCCC
Q 002068 868 VQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQ 947 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~ 947 (973)
+.+++..+++.+.++++++++|++.+|++.+|||+|+|.|++.+..+|++.++.+.+.+|+++.|+++. ++
T Consensus 735 l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~~~---------~~ 805 (821)
T CHL00095 735 LFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVND---------EK 805 (821)
T ss_pred HHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEEeC---------CC
Confidence 999998889999999999999999999999999999999999999999999999999999999999983 67
Q ss_pred cEEEEEcC
Q 002068 948 KLVFRRLD 955 (973)
Q Consensus 948 ~l~~~~~~ 955 (973)
++.|.+..
T Consensus 806 ~~~~~~~~ 813 (821)
T CHL00095 806 EVKILLIN 813 (821)
T ss_pred cEEEEecc
Confidence 88886543
No 6
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-106 Score=948.85 Aligned_cols=837 Identities=48% Similarity=0.712 Sum_probs=754.8
Q ss_pred CCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcC-CCHHHHHHHHHHHhhcCCCCCC
Q 002068 75 SGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVG-VDNTRLLEATEKFIQRQPKVLG 153 (973)
Q Consensus 75 ~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~g-v~~~~l~~~~~~~~~~~~~~~~ 153 (973)
+...+++.||++|..||..|+.+|+++||+++||+|++.+||..++|.++++|.+.+ ++..++..++...+.++|+..+
T Consensus 4 ~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~~~ 83 (898)
T KOG1051|consen 4 GVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTSYG 83 (898)
T ss_pred cccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccCCCC
Confidence 345678899999999999999999999999999999999999999999999999999 9999999999999999999876
Q ss_pred CCCCccCChhHHHHHHHHHHHHHHhCCCccChhHHHH-HhhcccccccchhhccCCChhHHHHHHHHHhccccccCCCCC
Q 002068 154 ETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVL-GFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPE 232 (973)
Q Consensus 154 ~~~~~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlll-all~~~~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~ 232 (973)
++...+++.+++++...+.+....+++.+|.++|+.+ ..+.|+..+.++++++|++...++..|....+...+....+.
T Consensus 84 p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g~~~~~~~~~~ 163 (898)
T KOG1051|consen 84 PPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFRSPSRGPL 163 (898)
T ss_pred CccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhccccCCCCcCCc
Confidence 3333444555555555555555567888999999944 334444455699999999999999999998865555555555
Q ss_pred chhHHHHhhhhcHHHHHhcCCCCCCCCc-hHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCC
Q 002068 233 GKYEALEKYGKDLTAMASAGKLDPVIGR-DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN 311 (973)
Q Consensus 233 ~~~~~l~~~~~~l~~~~~~~~l~~iiG~-~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~ 311 (973)
.....|.+|+.++++.++.++++|++|+ ++++++++++|+|++++|++|+|+||+|||.+++.+++++..|++|..+.+
T Consensus 164 ~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~ 243 (898)
T KOG1051|consen 164 WPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKD 243 (898)
T ss_pred cchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccc
Confidence 5678999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEcc
Q 002068 312 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGAT 391 (973)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at 391 (973)
..++.+++..+.+|.+++|+++.+++.+.+++...++++||||||+|++++++...+.+++.|+|++.+.+|.+||||||
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGat 323 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGAT 323 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecc
Confidence 99999999999999999999999999999999877789999999999999998887789999999999999999999999
Q ss_pred CchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHH
Q 002068 392 TLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLV 471 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ll 471 (973)
|.++|++|++.||+|.+||+.+.++.|+.++...||+++.++|+.+|++.+++.++..++.++.+|++.+++|+.+++++
T Consensus 324 T~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~ 403 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLE 403 (898)
T ss_pred cHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 472 DEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQS 551 (973)
Q Consensus 472 d~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~ 551 (973)
|+||+..+......|.+++.+++....++.++..|+++-+..+.+++. .+++...+.....+...|..++..++..+.
T Consensus 404 dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~ 481 (898)
T KOG1051|consen 404 DEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKL 481 (898)
T ss_pred HHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHhhhcc
Confidence 999999999999999999999999999999999998887766666666 666677777778899999999998888877
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCcc
Q 002068 552 IKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSK 631 (973)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~ 631 (973)
....++.... +.+++|.+++..++++.|+.++ +.... ...+ ...++.++..++..|+|+|+..
T Consensus 482 ~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~~~---------~~~~------~~~~~~~i~~~~s~~tgip~~~ 544 (898)
T KOG1051|consen 482 KKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DELSE---------KSND------NQGGESDISEVVSRWTGIPVDR 544 (898)
T ss_pred ccCCcccchh-hhcccCCCCcchhhhccccccc-hhhhh---------hccc------ccCCccchhhhhhhhcCCchhh
Confidence 6666666666 8889999999999999999988 11111 0111 1117889999999999999999
Q ss_pred ccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 632 LQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 632 ~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
....+.+++..|++.|.+.|+||++++.+|..++..++.|+.+| +|..|++|.||+|+|||.||+++|..+|+++..|+
T Consensus 545 ~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~I 623 (898)
T KOG1051|consen 545 LAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFI 623 (898)
T ss_pred hhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceE
Confidence 99999999999999999999999999999999999999999988 88889999999999999999999999999999999
Q ss_pred EeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 712 RIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 712 ~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
++||++|++ +++++|.++||+|+.+++++++.+++.|++||+|||||++|+++++.|++++|+|+++|+.|+.|+|+
T Consensus 624 riDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 624 RLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred Eechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 999999987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCChhhhhccCC------CCCCccchHHHHHHHHHHHHH----hccChhhhcccceEEEcCCCCHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDD------ETFPKETAYETIKQRVMDAAR----SIFRPEFMNRVDEYIVFQPLDRDQISSIV 861 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~l~----~~f~p~ll~R~d~~i~f~~l~~~~l~~I~ 861 (973)
|+|||||+|.+...+..... ........+...+..+.+..+ ..|+|+|++|+|.++.|.|++.+++.+|+
T Consensus 701 N~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~ 780 (898)
T KOG1051|consen 701 NAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIV 780 (898)
T ss_pred ceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhh
Confidence 99999999999886655432 111112334445566777777 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 862 RLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
...+.++.+++...++...+++.+.+++...+|++.||+|++++.|++.+.+.++..++ +.+.++.++.|...
T Consensus 781 ~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~ 853 (898)
T KOG1051|consen 781 NKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVA 853 (898)
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEec
Confidence 99999999999988888899999999999999999999999999999999999999999 99999999999987
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.1e-103 Score=959.70 Aligned_cols=718 Identities=45% Similarity=0.748 Sum_probs=649.9
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhh-cCCCCCCC-CCCccC
Q 002068 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQ-RQPKVLGE-TAGSML 160 (973)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~ 160 (973)
||++++++|..|+.+|++++|++|++||||+|||++++ +.++|+++|++++.++..+...++ +.|...+. ...+++
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 78 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGDVEALRKDLEDYLENNLPSITEENEADPEQ 78 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCc
Confidence 68999999999999999999999999999999999765 669999999999999999999887 44543221 135789
Q ss_pred ChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHH-Hhc-c-c-cccCCC--C--
Q 002068 161 GRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEA-IRG-R-Q-SVIDQD--P-- 231 (973)
Q Consensus 161 s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~-~~~-~-~-~~~~~~--~-- 231 (973)
|+.++++|+.|+.+|..+|+++|+++|||+||++++ +.+.++|..+|++.+.+...+.. ... . . ...... +
T Consensus 79 S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (731)
T TIGR02639 79 TVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKDDGKNRDAEEAGKEEA 158 (731)
T ss_pred CHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhccccccccccccccccccc
Confidence 999999999999999999999999999999999886 67778999999999999887752 111 1 0 110110 1
Q ss_pred CchhHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCC
Q 002068 232 EGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN 311 (973)
Q Consensus 232 ~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~ 311 (973)
....+.|++|++||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..+.+
T Consensus 159 ~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 159 KKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred ccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC-chhhHHHHHhhhhcCCCEEEEEc
Q 002068 312 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRCIGA 390 (973)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~-~~~~~~~~L~~~l~~g~i~iI~a 390 (973)
.+++.+|++.+.+|.+|+|+++++++.+++++... +++||||||+|.+.+++... +..+++++|++.+++|.+.|||+
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~Iga 317 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGS 317 (731)
T ss_pred CeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999999999999999999999999998754 57899999999999877543 45788999999999999999999
Q ss_pred cCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHH
Q 002068 391 TTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDL 470 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~l 470 (973)
||..+|.++++.|++|.|||+.|.|++|+.+++.+||+.+..+|+.+|++.++++++.+++.+|.+|+++|++|+||+++
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~l 397 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 397 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 471 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQ 550 (973)
Q Consensus 471 ld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~ 550 (973)
+|+||+.+++.....
T Consensus 398 ld~a~a~~~~~~~~~----------------------------------------------------------------- 412 (731)
T TIGR02639 398 IDEAGASFRLRPKAK----------------------------------------------------------------- 412 (731)
T ss_pred HHHhhhhhhcCcccc-----------------------------------------------------------------
Confidence 999998766521000
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCc
Q 002068 551 SIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVS 630 (973)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~ 630 (973)
....|+..++..+++.|+|+|+.
T Consensus 413 ---------------------------------------------------------~~~~v~~~~i~~~i~~~tgiP~~ 435 (731)
T TIGR02639 413 ---------------------------------------------------------KKANVSVKDIENVVAKMAHIPVK 435 (731)
T ss_pred ---------------------------------------------------------cccccCHHHHHHHHHHHhCCChh
Confidence 01247889999999999999999
Q ss_pred cccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcce
Q 002068 631 KLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710 (973)
Q Consensus 631 ~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~ 710 (973)
.+...+...+..++..+.+.|+||+++++.|.+++...+.|+..|++|.+++||+||||||||++|++||+.+ +.++
T Consensus 436 ~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~ 512 (731)
T TIGR02639 436 TVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHL 512 (731)
T ss_pred hhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 5789
Q ss_pred EEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEec
Q 002068 711 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSF 790 (973)
Q Consensus 711 ~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~ 790 (973)
+++||++|.+.+..++++|+++||+|+.+++.+++.++..|++||||||||++++++++.|+++||+|+++|..|+.++|
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEecCCChhhhhccC-CCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHH
Q 002068 791 TNTVIIMTSNVGSQYILNMD-DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQ 869 (973)
Q Consensus 791 ~~~iiI~tsN~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~ 869 (973)
+|++||+|||.|.+.+.... ++. .....+.+...+.+.|+|+|++|||.+|+|.||+.+++.+|++..++++.
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~------~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFG------SENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcc------hhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987665421 111 12233456777889999999999999999999999999999999999999
Q ss_pred HHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 002068 870 KRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDT 934 (973)
Q Consensus 870 ~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~ 934 (973)
+++..+|+.+.++++++++|++.+|++++|+|+|+|.|++.+..+||+.++.|.+..|+++.|++
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~~~~ 731 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKVDL 731 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEEEeC
Confidence 99998899999999999999999999999999999999999999999999999999999998863
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-102 Score=932.32 Aligned_cols=720 Identities=40% Similarity=0.677 Sum_probs=645.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCCCC--CCCcc
Q 002068 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQR-QPKVLGE--TAGSM 159 (973)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~-~~~~~~~--~~~~~ 159 (973)
+|+.+..+|..|+.+|++++|++|++||||++|+.+++ +..+|+.+|++...++..+...++. .|...+. ...++
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCCHHHHHHHHHHHHhhcCCcCCCCCCcCCcC
Confidence 78999999999999999999999999999999998654 8899999999999999999998873 3322211 12467
Q ss_pred CChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhcc-ccc-cC---CC---
Q 002068 160 LGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGR-QSV-ID---QD--- 230 (973)
Q Consensus 160 ~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~-~~~-~~---~~--- 230 (973)
++..++++++.|+.+|..+|+.+|+++|||+||++++ +.+.++|..+|++...+...+..-... ... .. ..
T Consensus 80 ~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T PRK11034 80 PTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGSQPNS 159 (758)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhCCccccccccccccccccc
Confidence 8999999999999999999999999999999999886 777789999999988876664421000 000 00 00
Q ss_pred --CCchhHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcc
Q 002068 231 --PEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA 308 (973)
Q Consensus 231 --~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~ 308 (973)
.....+.|++|++||+++++.|++++++||++++++++++|+++.++|+||+||||||||++|+++++.+..+++|..
T Consensus 160 ~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~ 239 (758)
T PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_pred cccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCch
Confidence 012346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCC-CchhhHHHHHhhhhcCCCEEE
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT-NGAMDAGNLLKPMLGRGELRC 387 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~-~~~~~~~~~L~~~l~~g~i~i 387 (973)
+.++.++.++++.+.+|.+|+|+++.+++.+++.+... +++||||||+|.+.+++.. .+..++.|+|++++++|++.|
T Consensus 240 l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~-~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~v 318 (758)
T PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred hcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc-CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999988753 5789999999999988763 467889999999999999999
Q ss_pred EEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHH
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a 467 (973)
||+||.++|++++..|++|.|||+.|.|++|+.+++..||+.+..+|+.+|++.++++++..++.+|.+|++++++|+||
T Consensus 319 IgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (973)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~ 547 (973)
++++|+||++.++.. ..
T Consensus 399 idlldea~a~~~~~~----~~----------------------------------------------------------- 415 (758)
T PRK11034 399 IDVIDEAGARARLMP----VS----------------------------------------------------------- 415 (758)
T ss_pred HHHHHHHHHhhccCc----cc-----------------------------------------------------------
Confidence 999999999766420 00
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCC
Q 002068 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (973)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~ 627 (973)
. ....|+.+++.++++.|+|+
T Consensus 416 ------------------------------------------------------~-----~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 416 ------------------------------------------------------K-----RKKTVNVADIESVVARIARI 436 (758)
T ss_pred ------------------------------------------------------c-----cccccChhhHHHHHHHHhCC
Confidence 0 01236788999999999999
Q ss_pred CCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC
Q 002068 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (973)
Q Consensus 628 p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~ 707 (973)
|+..+...+.+.+..+++.|.+.|+||+++++.|..++..++.|+..+++|.+++||+||||||||++|+.+|+.+ +
T Consensus 437 p~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~ 513 (758)
T PRK11034 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G 513 (758)
T ss_pred ChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred cceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcE
Q 002068 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 708 ~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
.+++.+||++|.+.+.+++++|.++||+|+..++.+++.++..|++||||||||++++++++.|+++||+|+++|..|+.
T Consensus 514 ~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCce
Confidence 78999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
++|+|++||+|||.|.+.+....-..... .....+.+.++..|+|+|++|||.+|.|+|++.+++.+|+..++.+
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~-----~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQ-----DNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccc-----hhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987654421100000 0122345667889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 868 VQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
+.+++..+|+.+.++++++++|++.+|++.+|||+|+|.|++.+..++|+.++.|.+.+|+++.|+++
T Consensus 669 ~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v~~~ 736 (758)
T PRK11034 669 LQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALD 736 (758)
T ss_pred HHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=378.57 Aligned_cols=503 Identities=21% Similarity=0.324 Sum_probs=328.3
Q ss_pred CCCCCCCchHHHHHHHHHh------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 253 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
+|.++=|.+..+..+.+.+ .-.++.++||+||||||||+||+++|.++ +.+|+++...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 4777888888777776654 22456789999999999999999999999 9999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc---hhhHHHHHhhhhc--------CCCEEEEE
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG--------RGELRCIG 389 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~---~~~~~~~L~~~l~--------~g~i~iI~ 389 (973)
++++| +-|+.|++++++|+++... .|||+||||||.+.+.+.... ...+..-|+..|+ ...|.+||
T Consensus 258 eivSG--vSGESEkkiRelF~~A~~~-aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAKSN-APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHhcc-CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 99988 6699999999999999864 699999999999998876531 1223333444443 13699999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|||.++ .+||+|+| ||+ .|.+..|+...|.+||+.+++.+.....+ ....+++++.+|.+. +
T Consensus 335 ATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~-----d~~qlA~lTPGfVGA-----D 399 (802)
T KOG0733|consen 335 ATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF-----DFKQLAKLTPGFVGA-----D 399 (802)
T ss_pred cCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc-----CHHHHHhcCCCccch-----h
Confidence 999998 79999999 998 79999999999999999999865433222 356789999999875 3
Q ss_pred HHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHH-HHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 467 AIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEME-RLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTV 545 (973)
Q Consensus 467 a~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~ 545 (973)
...|..+|+.-+.-+ +.+.... .... ...+.+.. ++.+.+-..++.
T Consensus 400 L~AL~~~Aa~vAikR--------------~ld~~~~p~~~~--~~~ed~~~--~~~~~d~S~i~~--------------- 446 (802)
T KOG0733|consen 400 LMALCREAAFVAIKR--------------ILDQSSSPLTKV--PISEDSSN--KDAEEDQSSIKI--------------- 446 (802)
T ss_pred HHHHHHHHHHHHHHH--------------HhhcccCccccC--CccccccC--CCccchhhhhhc---------------
Confidence 334444443322111 0000000 0000 00000000 000000000000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhh
Q 002068 546 MTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWT 625 (973)
Q Consensus 546 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~ 625 (973)
+. .+++..++.+ .+++-+.+..+.+.. + .+..-.+..+|+.+.+..+.
T Consensus 447 -~~----------------~~~~~~~ld~----------v~~~~i~~~~d~~S~---E--~~~~L~i~~eDF~~Al~~iQ 494 (802)
T KOG0733|consen 447 -TS----------------NAERPLELDR----------VVQDAILNNPDPLSK---E--LLEGLSIKFEDFEEALSKIQ 494 (802)
T ss_pred -CC----------------cccccccHHH----------HHHHHHHhCCCCcCh---H--HhccceecHHHHHHHHHhcC
Confidence 00 0000000000 000000000000000 0 00011355666665554431
Q ss_pred CCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCCCcHHHHHH
Q 002068 626 GIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAK 697 (973)
Q Consensus 626 ~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ 697 (973)
|.. .++-|....+.-|..|-+++++..++..++.+ .+.|+..|. .+||+||||||||.||+
T Consensus 495 --PSa-----kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~Ps----GvLL~GPPGCGKTLlAK 563 (802)
T KOG0733|consen 495 --PSA-----KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPS----GVLLCGPPGCGKTLLAK 563 (802)
T ss_pred --cch-----hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCC----ceEEeCCCCccHHHHHH
Confidence 111 12334444455678888888888887777632 234555443 69999999999999999
Q ss_pred HHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccCH----------
Q 002068 698 ALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHS---------- 765 (973)
Q Consensus 698 ~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~---------- 765 (973)
++|++. +.+|+.+...++.+. |||..+ .++++..++.+.+|||||||||.+-|
T Consensus 564 AVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s 628 (802)
T KOG0733|consen 564 AVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVS 628 (802)
T ss_pred HHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhH
Confidence 999998 889999999988665 555433 24677778888899999999998864
Q ss_pred -HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cc
Q 002068 766 -DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NR 842 (973)
Q Consensus 766 -~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R 842 (973)
.+.|+||.-||... +-.++.||++||. .+.++|+++ +|
T Consensus 629 ~RvvNqLLtElDGl~---------~R~gV~viaATNR------------------------------PDiIDpAiLRPGR 669 (802)
T KOG0733|consen 629 SRVVNQLLTELDGLE---------ERRGVYVIAATNR------------------------------PDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHHHHhcccc---------cccceEEEeecCC------------------------------CcccchhhcCCCc
Confidence 49999999999743 2246789999997 233566666 99
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 843 VDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 843 ~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
||.+..+.+++.++...|++...+. ....+++++ ++.|++...=.+|..-.|.-.++..-..+|-+.+..
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tkn---------~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITKN---------TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhcc---------CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999876631 223444444 466666432234555678888888777777777765
Q ss_pred C
Q 002068 922 G 922 (973)
Q Consensus 922 ~ 922 (973)
.
T Consensus 741 ~ 741 (802)
T KOG0733|consen 741 I 741 (802)
T ss_pred c
Confidence 4
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=341.00 Aligned_cols=412 Identities=24% Similarity=0.376 Sum_probs=302.4
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEE
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILf 353 (973)
+.+.++|+|||||||||.+++++|++. ++.++.++.+.++. ++.|+.+..++.+|.++.....|.|+|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHHH--hcccchHHHHHHHHHHHhccCCCeeEe
Confidence 567789999999999999999999997 88999999999984 588999999999999998765589999
Q ss_pred EccccccccCCCCC-c-hhhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHc-cCc-eEEecCCCHHHHHH
Q 002068 354 IDEIHTVVGAGATN-G-AMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER-RFQ-QVYVDQPNVEDTIS 425 (973)
Q Consensus 354 iDEi~~l~~~~~~~-~-~~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~-Rf~-~i~~~~p~~~e~~~ 425 (973)
|||++.+.+.+... + ...+...|..+++ .+++++|++||.+. .+|++++| ||+ .+.+..|+..+|.+
T Consensus 284 IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 284 IDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred HHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhHHH
Confidence 99999999866544 2 2333444444443 67899999999997 79999998 998 79999999999999
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHh
Q 002068 426 ILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLS 505 (973)
Q Consensus 426 il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 505 (973)
|++.+.++++ .. ++..+..++..+.+|.+. +...++.+|......+
T Consensus 359 Il~~l~k~~~----~~-~~~~l~~iA~~thGyvGa-----DL~~l~~ea~~~~~r~------------------------ 404 (693)
T KOG0730|consen 359 ILRVLTKKMN----LL-SDVDLEDIAVSTHGYVGA-----DLAALCREASLQATRR------------------------ 404 (693)
T ss_pred HHHHHHHhcC----Cc-chhhHHHHHHHccchhHH-----HHHHHHHHHHHHHhhh------------------------
Confidence 9999988643 32 567788888899888653 2222222221111000
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHH
Q 002068 506 LTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNA 585 (973)
Q Consensus 506 l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (973)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHH
Q 002068 586 LQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAI 665 (973)
Q Consensus 586 l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i 665 (973)
........ ...+.++.+.+.+- .+.+.-|+.|-|+++.++.|.+++
T Consensus 405 ---~~~~~~~A------------~~~i~psa~Re~~v-------------------e~p~v~W~dIGGlE~lK~elq~~V 450 (693)
T KOG0730|consen 405 ---TLEIFQEA------------LMGIRPSALREILV-------------------EMPNVSWDDIGGLEELKRELQQAV 450 (693)
T ss_pred ---hHHHHHHH------------HhcCCchhhhheec-------------------cCCCCChhhccCHHHHHHHHHHHH
Confidence 00000000 01122333333221 112234678888999888888877
Q ss_pred HH--------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccc
Q 002068 666 QR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY 737 (973)
Q Consensus 666 ~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~ 737 (973)
.+ .+.|+..|+ .||||||||||||++|+++|++. +.+|+.+.+.++..+ ++|.....+
T Consensus 451 ~~p~~~pe~F~r~Gi~ppk----GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk-----~vGeSEr~i-- 516 (693)
T KOG0730|consen 451 EWPLKHPEKFARFGISPPK----GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK-----YVGESERAI-- 516 (693)
T ss_pred hhhhhchHHHHHhcCCCCc----eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH-----hcCchHHHH--
Confidence 43 355655444 69999999999999999999999 789999999987543 344433322
Q ss_pred cccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 738 EEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 738 ~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+.++...+.+.++||||||||.+. ..|++.||+.||... ..++++||++||.
T Consensus 517 ---r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNR----- 579 (693)
T KOG0730|consen 517 ---REVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNR----- 579 (693)
T ss_pred ---HHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCC-----
Confidence 467788888888999999999764 358999999998633 2368999999998
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
.+.+++++++ |||.+|.+++++.+...+|++.+.++ ..++++
T Consensus 580 -------------------------pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~~~~ 623 (693)
T KOG0730|consen 580 -------------------------PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPFSED 623 (693)
T ss_pred -------------------------hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCCCcc
Confidence 3456778885 99999999999999999999988843 445555
Q ss_pred -HHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 002068 885 -AIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGI 919 (973)
Q Consensus 885 -a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~ 919 (973)
-++.|++. ...|+..+|..+++.+-...+-+-+
T Consensus 624 vdl~~La~~--T~g~SGAel~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 624 VDLEELAQA--TEGYSGAEIVAVCQEAALLALRESI 657 (693)
T ss_pred ccHHHHHHH--hccCChHHHHHHHHHHHHHHHHHhc
Confidence 35677773 3345667888888887666555444
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.4e-32 Score=332.86 Aligned_cols=457 Identities=24% Similarity=0.399 Sum_probs=297.7
Q ss_pred CCCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+|+++.|.+..++.+.+.+. -..+.++||+||||||||++++++|+.+ +.+++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Confidence 467889999988877766542 1345689999999999999999999998 78899999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC-ch--hhHHHHHhhhh----cCCCEEEEEcc
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GA--MDAGNLLKPML----GRGELRCIGAT 391 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~-~~--~~~~~~L~~~l----~~g~i~iI~at 391 (973)
.+.+.+ ++.|+.+..++.+|+.+... .++||||||+|.+.+.+... +. ..+.+.|...+ +++.+.+|++|
T Consensus 245 ~~~i~~--~~~g~~~~~l~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 245 GPEIMS--KYYGESEERLREIFKEAEEN-APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred cHHHhc--ccccHHHHHHHHHHHHHHhc-CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 887763 47889999999999988754 57899999999998765432 11 23444555555 36789999999
Q ss_pred CchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCcc-CHHHHHHHHHhcccccCCCCCchHH
Q 002068 392 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRI-SDSALVEAAILSDRYISGRFLPDKA 467 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i-~~~~l~~l~~~s~~~i~~r~~p~~a 467 (973)
|..+ .+|+++++ ||+ .+.++.|+.+++.+||+..... ..+ .+..+..++..+.+|... ..
T Consensus 322 n~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------~~l~~d~~l~~la~~t~G~~ga-----dl 385 (733)
T TIGR01243 322 NRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------MPLAEDVDLDKLAEVTHGFVGA-----DL 385 (733)
T ss_pred CChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------CCCccccCHHHHHHhCCCCCHH-----HH
Confidence 9887 58999998 897 6899999999999999865542 222 233467778887766432 22
Q ss_pred HHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (973)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~ 547 (973)
..+...|+..+.-+ .+.. ...+
T Consensus 386 ~~l~~~a~~~al~r-------------~~~~---------~~~~------------------------------------ 407 (733)
T TIGR01243 386 AALAKEAAMAALRR-------------FIRE---------GKIN------------------------------------ 407 (733)
T ss_pred HHHHHHHHHHHHHH-------------Hhhc---------cccc------------------------------------
Confidence 22222222211000 0000 0000
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCC
Q 002068 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (973)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~ 627 (973)
+.. ..+.. + ......++..++...+....
T Consensus 408 ------------------------~~~---------~~i~~----------~------~~~~~~v~~~df~~Al~~v~-- 436 (733)
T TIGR01243 408 ------------------------FEA---------EEIPA----------E------VLKELKVTMKDFMEALKMVE-- 436 (733)
T ss_pred ------------------------ccc---------ccccc----------h------hcccccccHHHHHHHHhhcc--
Confidence 000 00000 0 00001122233322222111
Q ss_pred CCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCCCcHHHHHHHH
Q 002068 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKAL 699 (973)
Q Consensus 628 p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~l 699 (973)
|.. + .+.+......-|..+.|++.+++.|...+.... .+.. .|. .+||+||||||||++|+++
T Consensus 437 ps~-~----~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~---~~~-giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 437 PSA-I----REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR---PPK-GVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred ccc-c----chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC---CCc-eEEEECCCCCCHHHHHHHH
Confidence 100 0 001111122346788999999999888875321 1222 222 6999999999999999999
Q ss_pred HHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC------------HHH
Q 002068 700 ASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDV 767 (973)
Q Consensus 700 a~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~------------~~v 767 (973)
|+.+ +.+|+.++++++... ++|..... ...++..++...++||||||||.+. ..+
T Consensus 508 A~e~---~~~fi~v~~~~l~~~-----~vGese~~-----i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~ 574 (733)
T TIGR01243 508 ATES---GANFIAVRGPEILSK-----WVGESEKA-----IREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRI 574 (733)
T ss_pred HHhc---CCCEEEEehHHHhhc-----ccCcHHHH-----HHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHH
Confidence 9998 688999999876442 23322211 1355667778888999999999874 246
Q ss_pred HHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccce
Q 002068 768 FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDE 845 (973)
Q Consensus 768 ~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~ 845 (973)
.+.|+..|+.-. ...+++||+|||. ...++|+++ +|||.
T Consensus 575 ~~~lL~~ldg~~---------~~~~v~vI~aTn~------------------------------~~~ld~allRpgRfd~ 615 (733)
T TIGR01243 575 VNQLLTEMDGIQ---------ELSNVVVIAATNR------------------------------PDILDPALLRPGRFDR 615 (733)
T ss_pred HHHHHHHhhccc---------CCCCEEEEEeCCC------------------------------hhhCCHhhcCCCccce
Confidence 788888887411 2357899999997 334677887 59999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHH-HHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 846 YIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDA-AIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 846 ~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
+|.|++++.++..+|++.++.. .. ++++ -++.|++. ...|....+..+++.+....+-+.+.
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~~~---------~~--~~~~~~l~~la~~--t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHTRS---------MP--LAEDVDLEELAEM--TEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcC---------CC--CCccCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999865522 12 2222 25666663 33466778888888777776665543
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-29 Score=284.37 Aligned_cols=457 Identities=19% Similarity=0.277 Sum_probs=297.2
Q ss_pred CCCCchHHHHHHHHHhccCC---------CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 256 PVIGRDDEIRRCIQILSRRT---------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~~---------~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
+.-+++.-+..+.+++.-.. ...+||.|+||||||++++++|+++ +.+++.+||.++.+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~- 470 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAE- 470 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhc-
Confidence 34566777777777764322 2346899999999999999999999 999999999999865
Q ss_pred cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc-------CCCEEEEEccCchHHHhh
Q 002068 327 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKY 399 (973)
Q Consensus 327 ~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~g~i~iI~at~~~~~~~~ 399 (973)
..+..+.++..+|..++.. .++|||+-.+|.+.-...+.........+...+. .+.+.+|++|+..+
T Consensus 471 -s~~~~etkl~~~f~~a~~~-~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~---- 544 (953)
T KOG0736|consen 471 -SASHTETKLQAIFSRARRC-SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE---- 544 (953)
T ss_pred -ccchhHHHHHHHHHHHhhc-CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc----
Confidence 4577888899999999875 6899999999999855444333334444443332 45788999998887
Q ss_pred hccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-HHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh
Q 002068 400 IEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 400 ~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~-~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~ 477 (973)
.+++.+++-|. .|.++.|+.++|.+||+.+..... +. +.-+..++..+.+|..+ ....++..+
T Consensus 545 -~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gfs~~-----~L~~l~~~~--- 609 (953)
T KOG0736|consen 545 -DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGFSFG-----DLEALVAHS--- 609 (953)
T ss_pred -cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCCCHH-----HHHHHhcCc---
Confidence 68889988764 899999999999999999887422 33 23344555555544322 112222111
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 478 LKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEID 557 (973)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~ 557 (973)
..+.. .++..-. +-.. ++ | +-+..|.
T Consensus 610 ----------s~~~~-~~i~~~~-----l~g~-----------~~-~---------~~~~~~~----------------- 635 (953)
T KOG0736|consen 610 ----------SLAAK-TRIKNKG-----LAGG-----------LQ-E---------EDEGELC----------------- 635 (953)
T ss_pred ----------hHHHH-HHHHhhc-----cccc-----------ch-h---------ccccccc-----------------
Confidence 00000 0000000 0000 00 0 0000000
Q ss_pred HHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHH-------hhhCCCCc
Q 002068 558 RVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVS-------KWTGIPVS 630 (973)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~-------~~~~~p~~ 630 (973)
+-...++++|+...++ ...|.|
T Consensus 636 -------------------------------------------------~~~~~l~~edf~kals~~~~~fs~aiGAP-- 664 (953)
T KOG0736|consen 636 -------------------------------------------------AAGFLLTEEDFDKALSRLQKEFSDAIGAP-- 664 (953)
T ss_pred -------------------------------------------------cccceecHHHHHHHHHHHHHhhhhhcCCC--
Confidence 0001122233222222 222333
Q ss_pred cccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC
Q 002068 631 KLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (973)
Q Consensus 631 ~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~ 707 (973)
.+...-|++|-|.++++..|.+.++..-. -+...-++...+|||||||||||.+|+++|-++ .
T Consensus 665 -----------KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s 730 (953)
T KOG0736|consen 665 -----------KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S 730 (953)
T ss_pred -----------CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e
Confidence 12234578999999999999999875110 001111222369999999999999999999998 7
Q ss_pred cceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH-------------HHHHHHHHh
Q 002068 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-------------DVFNVFLQI 774 (973)
Q Consensus 708 ~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~-------------~v~~~Ll~~ 774 (973)
..|+.+...++.+. ++|.+... .+.+++.++.+.+|||||||+|++.| .+..+||.-
T Consensus 731 L~FlSVKGPELLNM-----YVGqSE~N-----VR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAE 800 (953)
T KOG0736|consen 731 LNFLSVKGPELLNM-----YVGQSEEN-----VREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAE 800 (953)
T ss_pred eeEEeecCHHHHHH-----HhcchHHH-----HHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHH
Confidence 88999999887654 23333322 25778889999999999999999986 388999999
Q ss_pred hcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCC
Q 002068 775 LDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPL 852 (973)
Q Consensus 775 le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l 852 (973)
||. +.++ +...++||.+||. .+.++|+|+ +|||..+.+.+-
T Consensus 801 LDg--ls~~-----~s~~VFViGATNR------------------------------PDLLDpALLRPGRFDKLvyvG~~ 843 (953)
T KOG0736|consen 801 LDG--LSDS-----SSQDVFVIGATNR------------------------------PDLLDPALLRPGRFDKLVYVGPN 843 (953)
T ss_pred hhc--ccCC-----CCCceEEEecCCC------------------------------ccccChhhcCCCccceeEEecCC
Confidence 985 2221 3457789999997 233567776 999999999887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 853 DRDQISSIVRLQLDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 853 ~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
..++-+.-+-..+ .+ ++.+++++ +..+++ .+++++..-.+-..+..++..++.+.+-.
T Consensus 844 ~d~esk~~vL~Al---Tr-------kFkLdedVdL~eiAk-~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 844 EDAESKLRVLEAL---TR-------KFKLDEDVDLVEIAK-KCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccHHHHHHHHHHH---HH-------HccCCCCcCHHHHHh-hCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 7554433222222 22 24455555 345666 57888877888899998888887776643
No 13
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.97 E-value=4.2e-30 Score=288.25 Aligned_cols=278 Identities=22% Similarity=0.343 Sum_probs=209.5
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCCC----CC-----CCceEEEeecCCCCcHHHHHHHHHHHhcCCCcce
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD----PH-----RPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~----~~-----~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~ 710 (973)
...+...|.+.|+||+++++.+..++..++.++.. +. .+.+++||+||||||||++|+++|+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 34677889999999999999999998665554432 11 123589999999999999999999988 6789
Q ss_pred EEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-------hCCCeEEEEccccccCH--------------HHHH
Q 002068 711 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHS--------------DVFN 769 (973)
Q Consensus 711 ~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~--------------~v~~ 769 (973)
..++++.+. +++|+|++..+.+...++ .+.++||||||||++++ ++|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888887652 256888765556666554 34557999999999987 6999
Q ss_pred HHHHhhcCCeEec---CCCcEEeccCEEEEEecCC---------Chhhhhcc------CCCCCC-c--cchH-HHHHHHH
Q 002068 770 VFLQILDDGRVTD---SQGRTVSFTNTVIIMTSNV---------GSQYILNM------DDETFP-K--ETAY-ETIKQRV 827 (973)
Q Consensus 770 ~Ll~~le~g~~~~---~~g~~v~~~~~iiI~tsN~---------~~~~l~~~------~~~~~~-~--~~~~-~~~~~~~ 827 (973)
.||++|| |.+++ ..|+.++|.++++|+|||. |.+.+... .++... . .... +.+....
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999995 88876 5689999999999999999 44443321 011100 0 0001 1222223
Q ss_pred HHHHHh-ccChhhhcccceEEEcCCCCHHHHHHHHHHHH----HHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccH
Q 002068 828 MDAARS-IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQL----DRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARP 902 (973)
Q Consensus 828 ~~~l~~-~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l----~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~ 902 (973)
.+.+.+ .|.|||++|+|.++.|.||+.+++.+|+...+ +++.+.+..+++.+.++++++++|++.+|++.+|||+
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 334444 59999999999999999999999999999854 4555566667999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 903 VKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 903 L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
|+++|++.+...+++.--. ....++.|+.+
T Consensus 373 Lr~iie~~l~~~m~e~p~~---~~~~~v~i~~~ 402 (413)
T TIGR00382 373 LRSIVEGLLLDVMFDLPSL---EDLEKVVITKE 402 (413)
T ss_pred HHHHHHHhhHHHHhhCCCC---CCCcEEEECHH
Confidence 9999999999998876432 22334555543
No 14
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.96 E-value=8.3e-29 Score=280.00 Aligned_cols=278 Identities=23% Similarity=0.348 Sum_probs=204.5
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHHHccCC-------CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEe
Q 002068 641 LHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLS-------DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI 713 (973)
Q Consensus 641 ~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~-------~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i 713 (973)
..+...|.+.|+||+++++.|..++......+. +...+..++||+||||||||++|++||+.+ +.+|+.+
T Consensus 63 ~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~i 139 (412)
T PRK05342 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAIA 139 (412)
T ss_pred HHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCceec
Confidence 456677888899999999999888744322221 112244689999999999999999999998 7899999
Q ss_pred ccccccchhhhhhhcCCCCCcccccccchhhHH-------HHhCCCeEEEEccccccCH--------------HHHHHHH
Q 002068 714 DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEV-------VRRRPYAVILFDEIEKAHS--------------DVFNVFL 772 (973)
Q Consensus 714 ~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~-------~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll 772 (973)
||+.+.+ .+|+|......+... +..+.++||||||||++++ .+|+.||
T Consensus 140 d~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL 208 (412)
T PRK05342 140 DATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALL 208 (412)
T ss_pred chhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHH
Confidence 9988743 357775544444333 3356789999999999975 4999999
Q ss_pred HhhcCCeE--ecCCCcEEeccCEEEEEecCC---------Chhhhhcc------CCCC-CCcc----chHHHHHHHHH-H
Q 002068 773 QILDDGRV--TDSQGRTVSFTNTVIIMTSNV---------GSQYILNM------DDET-FPKE----TAYETIKQRVM-D 829 (973)
Q Consensus 773 ~~le~g~~--~~~~g~~v~~~~~iiI~tsN~---------~~~~l~~~------~~~~-~~~~----~~~~~~~~~~~-~ 829 (973)
++||.+.+ ++..|+..++.++++|+|+|. |.+.+... .++. .... .....+.+.+. +
T Consensus 209 ~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 288 (412)
T PRK05342 209 KILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPE 288 (412)
T ss_pred HHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHH
Confidence 99985543 456688888889999999998 33322111 1111 0000 00122222222 2
Q ss_pred HHHh-ccChhhhcccceEEEcCCCCHHHHHHHHHH----HHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHH
Q 002068 830 AARS-IFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVK 904 (973)
Q Consensus 830 ~l~~-~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~----~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 904 (973)
.+.+ .|.|||++|+|.++.|.||+.+++.+|+.. .++++.+.+...++.+.++++++++|++.+|+..+|||+|+
T Consensus 289 dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lr 368 (412)
T PRK05342 289 DLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLR 368 (412)
T ss_pred HHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHH
Confidence 2333 489999999999999999999999999984 56666677788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 905 RVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 905 r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
+.|++.+...+.+..... ....+.|+.+
T Consensus 369 riie~~l~~~~~~~p~~~---~~~~v~I~~~ 396 (412)
T PRK05342 369 SILEEILLDVMFELPSRE---DVEKVVITKE 396 (412)
T ss_pred HHHHHHhHHHHHhccccC---CCceEEECHH
Confidence 999999999998765332 2345666554
No 15
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-27 Score=269.96 Aligned_cols=343 Identities=23% Similarity=0.366 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHH----------HH
Q 002068 526 SLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESA----------EK 595 (973)
Q Consensus 526 ~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~ 595 (973)
.+.+.|++.+......+...+.-.+.+. .+++.++++.||+|.++. ++..+|++|+.- .+
T Consensus 188 ~~v~~Rlek~l~~l~~ei~~~~~ek~I~---~kVk~~meK~QREyyL~E-------QlKaIqkELG~~~d~~~e~~~~~~ 257 (782)
T COG0466 188 LDVKERLEKLLDLLEKEIDLLQLEKRIR---KKVKEQMEKSQREYYLRE-------QLKAIQKELGEDDDDKDEVEELRE 257 (782)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHhCCCccchhHHHHHHH
Confidence 3456677777777777766555555555 468899999999999987 333444444322 11
Q ss_pred HHHHhh----------h---cCCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHH
Q 002068 596 ELNEYI----------S---SGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVA 662 (973)
Q Consensus 596 ~l~~~~----------~---~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~ 662 (973)
.+++.. . .-..+....-+...+..++.+.+.+||..... +...+......|.+.-+|.++++++|.
T Consensus 258 kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIl 336 (782)
T COG0466 258 KIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERIL 336 (782)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHH
Confidence 111100 0 00012233445666888999999999987655 445778888899999999999999999
Q ss_pred HHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccch
Q 002068 663 EAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 742 (973)
Q Consensus 663 ~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~ 742 (973)
+.+...... ..-+.|+ ++|+||||+|||+|++.||+.+ +..|+++..+.+ .+.+.+-|+...|+|..+|..
T Consensus 337 EyLAV~~l~-~~~kGpI--LcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGv---rDEAEIRGHRRTYIGamPGrI 407 (782)
T COG0466 337 EYLAVQKLT-KKLKGPI--LCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGV---RDEAEIRGHRRTYIGAMPGKI 407 (782)
T ss_pred HHHHHHHHh-ccCCCcE--EEEECCCCCCchhHHHHHHHHh---CCCEEEEecCcc---ccHHHhccccccccccCChHH
Confidence 988654332 2234454 9999999999999999999999 789999999998 556788999999999998766
Q ss_pred hhHHHH-hCCCeEEEEccccccCHH----HHHHHHHhhc---CCeEecCC-CcEEeccCEEEEEecCCChhhhhccCCCC
Q 002068 743 LTEVVR-RRPYAVILFDEIEKAHSD----VFNVFLQILD---DGRVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 743 l~~~~~-~~~~~Vl~lDEid~l~~~----v~~~Ll~~le---~g~~~~~~-g~~v~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
+.+.-+ ...+.|++||||||+..+ -..+||.+|| +..+.|.+ .-.+|+++++||+|+|.
T Consensus 408 iQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs------------ 475 (782)
T COG0466 408 IQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS------------ 475 (782)
T ss_pred HHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc------------
Confidence 555444 345679999999999854 4689999997 45788877 77889999999999997
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCHHHHHHHH
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM---KMQVTDAAIQLLG 890 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~---~l~~~~~a~~~L~ 890 (973)
...++.+|++|+ ++|.+..|+.++..+|+.++| +.+.+...|+ .+.++++|+..|.
T Consensus 476 ------------------l~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 476 ------------------LDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred ------------------cccCChHHhcce-eeeeecCCChHHHHHHHHHhc--chHHHHHcCCCccceeecHHHHHHHH
Confidence 344788999999 899999999999999999998 6667776665 5899999999999
Q ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 002068 891 SLGYDPNYGARPVKRVIQQYVENELAKGILRGE 923 (973)
Q Consensus 891 ~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~ 923 (973)
++ |..+-|+|+|+|.|.++++. .+..++.+.
T Consensus 535 ~~-YTREAGVR~LeR~i~ki~RK-~~~~i~~~~ 565 (782)
T COG0466 535 RY-YTREAGVRNLEREIAKICRK-AAKKILLKK 565 (782)
T ss_pred HH-HhHhhhhhHHHHHHHHHHHH-HHHHHHhcC
Confidence 94 88999999999999995555 455555543
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-26 Score=259.36 Aligned_cols=429 Identities=19% Similarity=0.270 Sum_probs=266.9
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
...|+||.||+|+|||.||+++++++... ..+++..++|+.+.. .+ ...+...++.+|.++.. .+|.|+++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~-~~-~e~iQk~l~~vfse~~~-~~PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDG-SS-LEKIQKFLNNVFSEALW-YAPSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccc-hh-HHHHHHHHHHHHHHHHh-hCCcEEEE
Confidence 45689999999999999999999998532 256788888887652 22 33444556666666664 46899999
Q ss_pred ccccccccCCCCCchh------hHHHHH----hhhhcCC-CEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCH
Q 002068 355 DEIHTVVGAGATNGAM------DAGNLL----KPMLGRG-ELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNV 420 (973)
Q Consensus 355 DEi~~l~~~~~~~~~~------~~~~~L----~~~l~~g-~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~ 420 (973)
|++|.|.++..+.++. ....+| +.++.++ .+.+|++.+... .++|-|.+ +|+ .+.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 9999999743333221 122233 3333444 457888876654 57777777 677 689999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHH
Q 002068 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLE 500 (973)
Q Consensus 421 ~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~ 500 (973)
.+|.+||..++.+ .........++.++..+.+|.. .+..-+++.|+..+-....+.
T Consensus 576 ~~R~~IL~~~~s~----~~~~~~~~dLd~ls~~TEGy~~-----~DL~ifVeRai~~a~leris~--------------- 631 (952)
T KOG0735|consen 576 TRRKEILTTIFSK----NLSDITMDDLDFLSVKTEGYLA-----TDLVIFVERAIHEAFLERISN--------------- 631 (952)
T ss_pred hHHHHHHHHHHHh----hhhhhhhHHHHHHHHhcCCccc-----hhHHHHHHHHHHHHHHHHhcc---------------
Confidence 9999999998874 2234455666667777777743 233444555444322110000
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhh
Q 002068 501 MERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKY 580 (973)
Q Consensus 501 ~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (973)
..+ .+. +..
T Consensus 632 ----------------------------------------~~k-llt------------ke~------------------ 640 (952)
T KOG0735|consen 632 ----------------------------------------GPK-LLT------------KEL------------------ 640 (952)
T ss_pred ----------------------------------------Ccc-cch------------HHH------------------
Confidence 000 000 000
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHH-HHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHH
Q 002068 581 GSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEI-VSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVK 659 (973)
Q Consensus 581 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~-~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~ 659 (973)
+++.+. . ..+..+..+ ..+.+|+ =|.++-|..++++
T Consensus 641 -----f~ksL~-------~------------F~P~aLR~ik~~k~tgi-------------------~w~digg~~~~k~ 677 (952)
T KOG0735|consen 641 -----FEKSLK-------D------------FVPLALRGIKLVKSTGI-------------------RWEDIGGLFEAKK 677 (952)
T ss_pred -----HHHHHH-------h------------cChHHhhhccccccCCC-------------------CceecccHHHHHH
Confidence 000000 0 000000000 1111222 2456777777777
Q ss_pred HHHHHHHHHHc-cC---CCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcc
Q 002068 660 SVAEAIQRSRA-GL---SDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV 735 (973)
Q Consensus 660 ~l~~~i~~~~~-~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~ 735 (973)
.+.+.+.+... .. .-|-+-...+||+||||||||.||.++|... +..|+.+...++.+ ++||.+...+
T Consensus 678 ~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL~-----KyIGaSEq~v 749 (952)
T KOG0735|consen 678 VLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELLS-----KYIGASEQNV 749 (952)
T ss_pred HHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHHH-----HHhcccHHHH
Confidence 77777754211 00 0011222369999999999999999999988 78899988887744 4566554333
Q ss_pred cccccchhhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChh
Q 002068 736 GYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (973)
Q Consensus 736 g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~-----------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 804 (973)
+.+++.++.+.+|||||||+|++.| .|.|+||+-||.-+- +..+.|+++|..
T Consensus 750 -----R~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg---------l~GV~i~aaTsR--- 812 (952)
T KOG0735|consen 750 -----RDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG---------LDGVYILAATSR--- 812 (952)
T ss_pred -----HHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc---------cceEEEEEecCC---
Confidence 4778888899999999999999875 499999999986331 233445555544
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 002068 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVT 882 (973)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~ 882 (973)
.+.++|+|+ +|+|..|..+.++..+..+|++..-+. +.++
T Consensus 813 ---------------------------pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s-----------~~~~ 854 (952)
T KOG0735|consen 813 ---------------------------PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS-----------LLKD 854 (952)
T ss_pred ---------------------------ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc-----------cCCc
Confidence 123567776 899999999999999998988764432 2233
Q ss_pred HHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 883 DAA-IQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 883 ~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
+++ ++.++.. ..+|....|...+..+-..++-+++.
T Consensus 855 ~~vdl~~~a~~--T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 855 TDVDLECLAQK--TDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred cccchHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 333 4666664 23344456777776654444444443
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.95 E-value=2.4e-26 Score=283.22 Aligned_cols=352 Identities=21% Similarity=0.327 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHH----------HHHH
Q 002068 527 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLES----------AEKE 596 (973)
Q Consensus 527 ~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~ 596 (973)
+...+++.+.....++.+.+.-.+.+. .+++.++++.+|+|.+++ ++..+++++++ +.+.
T Consensus 186 d~~~RL~~l~~lL~~ele~l~l~~~I~---~~v~~~~~~~qr~~~Lre-------qlk~i~~eLg~~~~~~~~~~~~~~k 255 (775)
T TIGR00763 186 NIEKRLKKALELLKKELELLKLQNKIT---KKVEEKMEKTQREYYLRE-------QLKAIKKELGIEKDDKDELEKLKEK 255 (775)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHhhCCCCCchhHHHHHHHH
Confidence 455666666666666665555444444 357778888888888876 22233333322 1111
Q ss_pred HHHhh-------------hcCCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHH
Q 002068 597 LNEYI-------------SSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAE 663 (973)
Q Consensus 597 l~~~~-------------~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~ 663 (973)
+++.. ..-..+....-+...+..++..++++||...... ...+..++..+.+.++||+.+++.|..
T Consensus 256 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~ 334 (775)
T TIGR00763 256 LEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILE 334 (775)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHH
Confidence 11100 0000122233455567888999999999987665 667888899999999999999999988
Q ss_pred HHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchh
Q 002068 664 AIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQL 743 (973)
Q Consensus 664 ~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l 743 (973)
.+...... ..++.| ++||+||||||||++|++||+.+ +.+++.++++.+. +.+.+.|+...|+|...+. +
T Consensus 335 ~~~~~~~~-~~~~~~--~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~---~~~~i~g~~~~~~g~~~g~-i 404 (775)
T TIGR00763 335 YLAVQKLR-GKMKGP--ILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVR---DEAEIRGHRRTYVGAMPGR-I 404 (775)
T ss_pred HHHHHHhh-cCCCCc--eEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCcc---cHHHHcCCCCceeCCCCch-H
Confidence 76543321 112233 69999999999999999999999 6789999988763 3455667777788776543 3
Q ss_pred hHHHHh--CCCeEEEEccccccCHH----HHHHHHHhhcC---CeEecCC-CcEEeccCEEEEEecCCChhhhhccCCCC
Q 002068 744 TEVVRR--RPYAVILFDEIEKAHSD----VFNVFLQILDD---GRVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 744 ~~~~~~--~~~~Vl~lDEid~l~~~----v~~~Ll~~le~---g~~~~~~-g~~v~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
...+.. ..++||||||||++++. ..+.|+++||. +.+.|.. +..+++++++||+|||.
T Consensus 405 ~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~------------ 472 (775)
T TIGR00763 405 IQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS------------ 472 (775)
T ss_pred HHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC------------
Confidence 344443 24469999999999764 45899999984 6677765 77889999999999998
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCHHHHHHHH
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM---KMQVTDAAIQLLG 890 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~---~l~~~~~a~~~L~ 890 (973)
...++|+|++|| .+|.|++|+.++..+|+..++. .+.+...++ .+.++++++.+|+
T Consensus 473 ------------------~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~--~~~~~~~~l~~~~~~~~~~~l~~i~ 531 (775)
T TIGR00763 473 ------------------IDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLI--PKALEDHGLKPDELKITDEALLLLI 531 (775)
T ss_pred ------------------chhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHH--HHHHHHcCCCcceEEECHHHHHHHH
Confidence 234789999999 6899999999999999998884 344444444 5889999999999
Q ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEe
Q 002068 891 SLGYDPNYGARPVKRVIQQYVENELAKGIL-RGEFKDEDTIVIDT 934 (973)
Q Consensus 891 ~~~~~~~~gaR~L~r~i~~~i~~~la~~~l-~~~~~~~~~i~v~~ 934 (973)
+ .|...+|+|+|+|.|++.+... +..++ .+....|..+.|.+
T Consensus 532 ~-~~~~e~g~R~l~r~i~~~~~~~-~~~~~~~~~~~~~~~~~v~i 574 (775)
T TIGR00763 532 K-YYTREAGVRNLERQIEKICRKA-AVKLVEQGEKKKSEAESVVI 574 (775)
T ss_pred H-hcChhcCChHHHHHHHHHHHHH-HHHHHhccCcccCCcccccC
Confidence 9 6999999999999999988777 55555 45555444443433
No 18
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.95 E-value=1.3e-25 Score=273.22 Aligned_cols=352 Identities=22% Similarity=0.331 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHH----------HHHH
Q 002068 527 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLES----------AEKE 596 (973)
Q Consensus 527 ~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~ 596 (973)
+...|++.+....+++.+.+.-.+++. .+++.++++.+|+|.++. ++..+|++|++ ..+.
T Consensus 188 d~~eRLe~Ll~lL~~Eleil~l~~~I~---~~v~~~~~k~q~e~~lre-------q~~~i~~elg~~~~~~~~~~~~~~~ 257 (784)
T PRK10787 188 DVNERLEYLMAMMESEIDLLQVEKRIR---NRVKKQMEKSQREYYLNE-------QMKAIQKELGEMDDAPDENEALKRK 257 (784)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhcchh-------hhhhhcccccCCCcchhHHHHHHHH
Confidence 345666666666666665555444444 457888888889988876 23333333332 1111
Q ss_pred HHHhh----------hc---CCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHH
Q 002068 597 LNEYI----------SS---GKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAE 663 (973)
Q Consensus 597 l~~~~----------~~---~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~ 663 (973)
+++.. .+ -..+.....+...+..++...+.+||...... ...+......|.+..+|++.+++.|..
T Consensus 258 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~ 336 (784)
T PRK10787 258 IDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILE 336 (784)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHH
Confidence 11100 00 00122234455668888999999999886543 456777888899999999999999988
Q ss_pred HHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchh
Q 002068 664 AIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQL 743 (973)
Q Consensus 664 ~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l 743 (973)
.+..... ......+ .++|+||||||||++++.+++.+ +.++++++++... +...+.|+...|+|...+. +
T Consensus 337 ~l~~~~~-~~~~~g~--~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~---d~~~i~g~~~~~~g~~~G~-~ 406 (784)
T PRK10787 337 YLAVQSR-VNKIKGP--ILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVR---DEAEIRGHRRTYIGSMPGK-L 406 (784)
T ss_pred HHHHHHh-cccCCCc--eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCC---CHHHhccchhccCCCCCcH-H
Confidence 7764332 1112233 59999999999999999999998 6789999988764 3456777777788776654 4
Q ss_pred hHHHHh--CCCeEEEEccccccCHHH----HHHHHHhhcCC---eEecCC-CcEEeccCEEEEEecCCChhhhhccCCCC
Q 002068 744 TEVVRR--RPYAVILFDEIEKAHSDV----FNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 744 ~~~~~~--~~~~Vl~lDEid~l~~~v----~~~Ll~~le~g---~~~~~~-g~~v~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
...+.. ..++||+|||||+++++. ++.|++++|.+ .++|.+ .-.+++++++||+|+|.
T Consensus 407 ~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~------------ 474 (784)
T PRK10787 407 IQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS------------ 474 (784)
T ss_pred HHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC------------
Confidence 444443 246799999999999875 59999999975 567765 55688899999999997
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHH-HHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLD-RVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~-~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
. .++|+|++|| .+|.|.+|+.+++.+|+++++. +..++....+..+.++++++++|++
T Consensus 475 ------------------~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~- 533 (784)
T PRK10787 475 ------------------M-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR- 533 (784)
T ss_pred ------------------C-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-
Confidence 1 2789999999 6899999999999999999995 3444443345579999999999998
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 893 GYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 893 ~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
+|++.+|+|+|+|.|++.++..+++.++.+... .+.|+.+
T Consensus 534 ~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~---~v~v~~~ 573 (784)
T PRK10787 534 YYTREAGVRSLEREISKLCRKAVKQLLLDKSLK---HIEINGD 573 (784)
T ss_pred hCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCc---eeeecHH
Confidence 899999999999999999999999988876543 3555443
No 19
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.93 E-value=6.6e-26 Score=227.11 Aligned_cols=155 Identities=52% Similarity=0.865 Sum_probs=131.4
Q ss_pred CCceEEEeecCCCCcHHHHHHHHHHHhc-CCCcceEEeccccccc----hhhhhhhcCCCCCcccccccchhhHHHHhCC
Q 002068 677 RPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYME----KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP 751 (973)
Q Consensus 677 ~p~~~~Ll~Gp~GtGKT~lA~~la~~l~-~~~~~~~~i~~~~~~~----~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~ 751 (973)
||.+++||+||+|||||++|+++|+.++ +...+++.+||++|.+ .+.+++++|.+++|+++.+.+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g---------- 70 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG---------- 70 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh----------
Confidence 5788999999999999999999999999 7889999999999999 777889999999998866544
Q ss_pred CeEEEEccccccCH-----------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchH
Q 002068 752 YAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 820 (973)
Q Consensus 752 ~~Vl~lDEid~l~~-----------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~ 820 (973)
|||||||||+++ .||+.||++||+|+++|..|+.++++|++||||||.+........... ....
T Consensus 71 --VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~---~~~~ 145 (171)
T PF07724_consen 71 --VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG---EAIE 145 (171)
T ss_dssp --EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC---TCCH
T ss_pred --hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc---cccH
Confidence 999999999999 999999999999999999999999999999999999887655422101 1113
Q ss_pred HHHHHHHHHHHHhccChhhhcccceE
Q 002068 821 ETIKQRVMDAARSIFRPEFMNRVDEY 846 (973)
Q Consensus 821 ~~~~~~~~~~l~~~f~p~ll~R~d~~ 846 (973)
......+.+.+...|.|||++|||.+
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 44455667778899999999999864
No 20
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.92 E-value=3.1e-24 Score=240.77 Aligned_cols=274 Identities=17% Similarity=0.253 Sum_probs=218.2
Q ss_pred HhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCC
Q 002068 599 EYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRP 678 (973)
Q Consensus 599 ~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p 678 (973)
..+..-++.+.++++.+.+...+.+........... .....-.......++|++.+++++.+.+.+......
T Consensus 94 A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~---~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a----- 165 (464)
T COG2204 94 ALRLGAFDFLEKPFDLDRLLAIVERALELRELQREN---RRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDA----- 165 (464)
T ss_pred HHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhh---hhhhhccccccCCceecCHHHHHHHHHHHHHhCCCC-----
Confidence 334445567777888888888777765432111100 000001113467899999999999999987653222
Q ss_pred ceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCC-cccccccchhhHHHHhCCCeEEEE
Q 002068 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 679 ~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
+||+.|++||||..+|++||+...+.+.||+.+||+.+.+..-.+.|||+..| |.|... .-.+.+..+.+++|||
T Consensus 166 --~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~--~r~G~fE~A~GGTLfL 241 (464)
T COG2204 166 --SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAIT--RRIGRFEQANGGTLFL 241 (464)
T ss_pred --CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCccc--ccCcceeEcCCceEEe
Confidence 69999999999999999999999988999999999999998888999999887 555442 3356788999999999
Q ss_pred ccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccCh
Q 002068 758 DEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 837 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p 837 (973)
|||..++.++|..||.+|++|.+..-.|.+..-.++.||++||.+.....+ ...|++
T Consensus 242 DEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~-----------------------~G~FRe 298 (464)
T COG2204 242 DEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA-----------------------AGRFRE 298 (464)
T ss_pred eccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH-----------------------cCCcHH
Confidence 999999999999999999999998877766666789999999997655444 456999
Q ss_pred hhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 838 EFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 838 ~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+|++|+.. .|.+|||. .+|+.-++..+++++..+.... ...++++++..|..|.|++| +|+|++++++.+
T Consensus 299 DLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~--~~~~s~~a~~~L~~y~WPGN--VREL~N~ver~~ 371 (464)
T COG2204 299 DLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP--PKGFSPEALAALLAYDWPGN--VRELENVVERAV 371 (464)
T ss_pred HHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCChH--HHHHHHHHHHHH
Confidence 99999975 57778887 6799999999999988876533 46799999999999999888 899999999955
No 21
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.8e-23 Score=226.59 Aligned_cols=174 Identities=24% Similarity=0.386 Sum_probs=125.9
Q ss_pred HHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh--
Q 002068 269 QILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES-- 346 (973)
Q Consensus 269 ~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~-- 346 (973)
+.|.-..-.++|||||||||||.+||.|.+.| +..-|. -+|...+. .+|+|+.|+.++++|..+...
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkML-NArePK--------IVNGPeIL--~KYVGeSE~NvR~LFaDAEeE~r 317 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKML-NAREPK--------IVNGPEIL--NKYVGESEENVRKLFADAEEEQR 317 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHh-cCCCCc--------ccCcHHHH--HHhhcccHHHHHHHHHhHHHHHH
Confidence 33444455678999999999999999999988 322232 23444555 469999999999999888752
Q ss_pred -----CCCeEEEEccccccccCCCCC-ch----hhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHc--cC
Q 002068 347 -----EGQIILFIDEIHTVVGAGATN-GA----MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RF 410 (973)
Q Consensus 347 -----~~~~ILfiDEi~~l~~~~~~~-~~----~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~--Rf 410 (973)
.+=-|+++||||.+...+++. |+ ..+.|-|+.-++ -.+|.+||-||+.++ +|.||+| ||
T Consensus 318 ~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl-----IDEALLRPGRl 392 (744)
T KOG0741|consen 318 RLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL-----IDEALLRPGRL 392 (744)
T ss_pred hhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh-----HHHHhcCCCce
Confidence 122488999999999665443 21 234455544443 248999999999995 8999999 99
Q ss_pred c-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 411 Q-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 411 ~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
. .+++..|++.-|++|++-..+++.. ++.--++-.++.++.++..|.+
T Consensus 393 EVqmEIsLPDE~gRlQIl~IHT~rMre-~~~l~~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 393 EVQMEISLPDEKGRLQILKIHTKRMRE-NNKLSADVDLKELAALTKNFSG 441 (744)
T ss_pred EEEEEEeCCCccCceEEEEhhhhhhhh-cCCCCCCcCHHHHHHHhcCCch
Confidence 8 6899999999999999776665543 3332344457788888887754
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.4e-24 Score=228.91 Aligned_cols=199 Identities=27% Similarity=0.371 Sum_probs=161.8
Q ss_pred hcHHHHHhcCCCCCCCCchH------HHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 243 KDLTAMASAGKLDPVIGRDD------EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~------~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
.||.++.||.+|+++|||+. .++++++ .....+++|||||||||||||+.||+.. +..|..
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~ 78 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEA 78 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEE
Confidence 38999999999999999986 4566665 5788899999999999999999999998 888998
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCc
Q 002068 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 393 (973)
Q Consensus 317 l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~ 393 (973)
++. ..+|.+ .++.++++++.. +...||||||||++.+ ..+++|++.+|+|.|++|||||.
T Consensus 79 ~sA--v~~gvk-------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 79 LSA--VTSGVK-------DLREIIEEARKNRLLGRRTILFLDEIHRFNK--------AQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred ecc--ccccHH-------HHHHHHHHHHHHHhcCCceEEEEehhhhcCh--------hhhhhhhhhhcCCeEEEEeccCC
Confidence 853 444433 688888888653 3478999999999984 46788999999999999999999
Q ss_pred hHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhh---cCCccCHHHHHHHHHhcccccCCCCCchHHHHH
Q 002068 394 DEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELH---HGVRISDSALVEAAILSDRYISGRFLPDKAIDL 470 (973)
Q Consensus 394 ~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~---~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~l 470 (973)
+++ |+++++++||++.+.+.+.+.++..++++..+...+.. ..+.++++++..++.++.+-. ..++++
T Consensus 142 NPs---F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aLN~ 212 (436)
T COG2256 142 NPS---FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRALNL 212 (436)
T ss_pred CCC---eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHHHH
Confidence 997 89999999999999999999999999997744332211 234589999999999997532 256777
Q ss_pred HHHHHhhhhh
Q 002068 471 VDEAAAKLKM 480 (973)
Q Consensus 471 ld~a~~~~~~ 480 (973)
++.+....+.
T Consensus 213 LE~~~~~~~~ 222 (436)
T COG2256 213 LELAALSAEP 222 (436)
T ss_pred HHHHHHhcCC
Confidence 7776655443
No 23
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.91 E-value=5.7e-24 Score=236.94 Aligned_cols=230 Identities=21% Similarity=0.358 Sum_probs=196.6
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
-+..++|.+.++..+...+++..... .++|+.|++||||..+|++||+.+-+.+.||+.+||+.+.+....|.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~td-------stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTD-------STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESE 315 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCC-------CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHH
Confidence 35789999999999888887654321 16999999999999999999999999999999999999999888999
Q ss_pred hcCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhh
Q 002068 727 LIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 805 (973)
Q Consensus 727 l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 805 (973)
|||..+| |.|...+|. .+.+..++++.||||||..++...|..||++|+++.+..-.|...-..++.||++||.....
T Consensus 316 LFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 316 LFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK 394 (560)
T ss_pred HhCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH
Confidence 9999887 777765443 47788899999999999999999999999999999988766666666789999999997766
Q ss_pred hhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 002068 806 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVT 882 (973)
Q Consensus 806 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~ 882 (973)
+.+ ...|+.+|++|++. .|.+|||. ++|+..++..+|.++..++... .-.++
T Consensus 395 ~i~-----------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~--v~~ls 449 (560)
T COG3829 395 MIA-----------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRN--VKGLS 449 (560)
T ss_pred HHh-----------------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCC--cccCC
Confidence 554 45699999999976 47788887 6799999999999888876553 23499
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 883 DAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 883 ~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
++++..|.++.|++| +|+|+++|++.+
T Consensus 450 ~~a~~~L~~y~WPGN--VRELeNviER~v 476 (560)
T COG3829 450 PDALALLLRYDWPGN--VRELENVIERAV 476 (560)
T ss_pred HHHHHHHHhCCCCch--HHHHHHHHHHHH
Confidence 999999999999988 899999999865
No 24
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.91 E-value=5.9e-24 Score=233.15 Aligned_cols=229 Identities=19% Similarity=0.342 Sum_probs=193.6
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..+||++.++.++.+.+........ +||+.|++||||..+|++||+.+.+.+.||+.+||+.+.+....|.||
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~Sd~-------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKSDS-------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcCCC-------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 5799999999999999987653222 699999999999999999999999999999999999999999999999
Q ss_pred CCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 729 GAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 729 G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
|+..| |.|... .-.+.+..+.++.||||||..++..+|..||.+|++|.+..-.|.+.-..++.||++||.+....+
T Consensus 296 GHeKGAFTGA~~--~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V 373 (550)
T COG3604 296 GHEKGAFTGAIN--TRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV 373 (550)
T ss_pred cccccccccchh--ccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH
Confidence 99887 455432 334566778899999999999999999999999999999876666666668999999999765554
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
. ...|+.+|++|++. -+.+||+. .+|+.-++..++.+++.++... .+.++++
T Consensus 374 ~-----------------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~ 428 (550)
T COG3604 374 R-----------------------DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAE 428 (550)
T ss_pred H-----------------------cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHH
Confidence 4 35699999999976 36667776 5689999999998887765443 6899999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
|++.|.++.|++| +|+|+++|++.+..
T Consensus 429 Al~~L~~y~wPGN--VRELen~veRavll 455 (550)
T COG3604 429 ALELLSSYEWPGN--VRELENVVERAVLL 455 (550)
T ss_pred HHHHHHcCCCCCc--HHHHHHHHHHHHHH
Confidence 9999999999888 89999999996643
No 25
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-22 Score=227.53 Aligned_cols=265 Identities=23% Similarity=0.361 Sum_probs=214.0
Q ss_pred chhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcH
Q 002068 613 TGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGK 692 (973)
Q Consensus 613 ~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGK 692 (973)
.......++...+.+||.+.+.+ .-.+..-...|.+.-+|.++++++|.+.+...+.... ...+ .++|+||||+||
T Consensus 376 EfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs-~qGk--IlCf~GPPGVGK 451 (906)
T KOG2004|consen 376 EFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS-VQGK--ILCFVGPPGVGK 451 (906)
T ss_pred chhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc-CCCc--EEEEeCCCCCCc
Confidence 34456778888999999988766 3456677788999999999999999999876654222 2334 489999999999
Q ss_pred HHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH--hCCCeEEEEccccccCH----H
Q 002068 693 TELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR--RRPYAVILFDEIEKAHS----D 766 (973)
Q Consensus 693 T~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~--~~~~~Vl~lDEid~l~~----~ 766 (973)
|++|+.||+.+ +..|+++..+.+ .+++.+-|+...|+|..+|. +...++ ...+.+++||||||+.. +
T Consensus 452 TSI~kSIA~AL---nRkFfRfSvGG~---tDvAeIkGHRRTYVGAMPGk-iIq~LK~v~t~NPliLiDEvDKlG~g~qGD 524 (906)
T KOG2004|consen 452 TSIAKSIARAL---NRKFFRFSVGGM---TDVAEIKGHRRTYVGAMPGK-IIQCLKKVKTENPLILIDEVDKLGSGHQGD 524 (906)
T ss_pred ccHHHHHHHHh---CCceEEEecccc---ccHHhhcccceeeeccCChH-HHHHHHhhCCCCceEEeehhhhhCCCCCCC
Confidence 99999999999 788999999988 45678889999999998864 555666 34567999999999874 3
Q ss_pred HHHHHHHhhc---CCeEecCC-CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcc
Q 002068 767 VFNVFLQILD---DGRVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNR 842 (973)
Q Consensus 767 v~~~Ll~~le---~g~~~~~~-g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R 842 (973)
--.+||.+|| +..+.|.+ .-.+|++.++||||.|. .+.++|+|++|
T Consensus 525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~------------------------------idtIP~pLlDR 574 (906)
T KOG2004|consen 525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV------------------------------IDTIPPPLLDR 574 (906)
T ss_pred hHHHHHHhcChhhccchhhhccccccchhheEEEEeccc------------------------------cccCChhhhhh
Confidence 4578899987 34566766 67899999999999998 45589999999
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 002068 843 VDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM---KMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGI 919 (973)
Q Consensus 843 ~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~---~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~ 919 (973)
+ ++|.++-|..++..+|+.++| +.+.....|+ .+.++++++..|.++ |-.+-|+|.|++.|+++ .+..|-.+
T Consensus 575 M-EvIelsGYv~eEKv~IA~~yL--ip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI-~Rk~Al~v 649 (906)
T KOG2004|consen 575 M-EVIELSGYVAEEKVKIAERYL--IPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKI-CRKVALKV 649 (906)
T ss_pred h-heeeccCccHHHHHHHHHHhh--hhHHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHH-HHHHHHHH
Confidence 9 899999999999999999998 4555555565 478999999998884 77788999999999984 45555555
Q ss_pred HcCC
Q 002068 920 LRGE 923 (973)
Q Consensus 920 l~~~ 923 (973)
.++.
T Consensus 650 v~~~ 653 (906)
T KOG2004|consen 650 VEGE 653 (906)
T ss_pred HHhh
Confidence 5543
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-21 Score=231.21 Aligned_cols=430 Identities=24% Similarity=0.317 Sum_probs=263.5
Q ss_pred HHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCC
Q 002068 269 QILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEG 348 (973)
Q Consensus 269 ~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~ 348 (973)
+.+....+.+++++||||+|||.++++++.. + .....++..... .++.|+.+..+..++..+....
T Consensus 11 ~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~- 76 (494)
T COG0464 11 KKLGIEPPKGVLLHGPPGTGKTLLARALANE---G--------AEFLSINGPEIL--SKYVGESELRLRELFEEAEKLA- 76 (494)
T ss_pred HHhCCCCCCCceeeCCCCCchhHHHHHHHhc---c--------CcccccCcchhh--hhhhhHHHHHHHHHHHHHHHhC-
Confidence 3444567789999999999999999999987 1 112444444444 4578999999999999998754
Q ss_pred CeEEEEccccccccCCCCCc---hhhHHHHHhhhhc---CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCC
Q 002068 349 QIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG---RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPN 419 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~---~~~~~~~L~~~l~---~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~ 419 (973)
++++++||++.+.+...... ...+.+.+...++ ++.+.+++.|+... .+++++++ ||. .+.+..|+
T Consensus 77 ~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 77 PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred CCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCCC
Confidence 58999999999997765521 1122333333332 44577788888776 58888888 887 68999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccC-HHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHH
Q 002068 420 VEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLK 498 (973)
Q Consensus 420 ~~e~~~il~~~~~~~~~~~~v~i~-~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~ 498 (973)
...+.+|+...... ..+. +.....++..+.+|... ....+...+........
T Consensus 152 ~~~~~ei~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~r~---------------- 204 (494)
T COG0464 152 EAGRLEILQIHTRL------MFLGPPGTGKTLAARTVGKSGA-----DLGALAKEAALRELRRA---------------- 204 (494)
T ss_pred HHHHHHHHHHHHhc------CCCcccccHHHHHHhcCCccHH-----HHHHHHHHHHHHHHHhh----------------
Confidence 88887777655432 1122 33444455555444321 11111111100000000
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHh
Q 002068 499 LEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAEL 578 (973)
Q Consensus 499 ~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (973)
+
T Consensus 205 ----------------------------------------------------------------~--------------- 205 (494)
T COG0464 205 ----------------------------------------------------------------I--------------- 205 (494)
T ss_pred ----------------------------------------------------------------h---------------
Confidence 0
Q ss_pred hhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHH
Q 002068 579 KYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAV 658 (973)
Q Consensus 579 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i 658 (973)
........++..+..+.+....+. . .........-|..+.|.+.++
T Consensus 206 -------------------------~~~~~~~~~~~~~~~~~l~~~~~~--~-------~~~~~~~~v~~~diggl~~~k 251 (494)
T COG0464 206 -------------------------DLVGEYIGVTEDDFEEALKKVLPS--R-------GVLFEDEDVTLDDIGGLEEAK 251 (494)
T ss_pred -------------------------ccCcccccccHHHHHHHHHhcCcc--c-------ccccCCCCcceehhhcHHHHH
Confidence 000000011222222222222110 0 000000111234555666666
Q ss_pred HHHHHHHHHHHccCC----CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCc
Q 002068 659 KSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY 734 (973)
Q Consensus 659 ~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~ 734 (973)
..+...+.....-.. ...+|...+||+||||||||++|+++|..+ +.+|+.++++++.++ .+|.....
T Consensus 252 ~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk-----~vGesek~ 323 (494)
T COG0464 252 EELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK-----WVGESEKN 323 (494)
T ss_pred HHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc-----ccchHHHH
Confidence 666555543221100 011222379999999999999999999988 789999999987554 24433322
Q ss_pred ccccccchhhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh
Q 002068 735 VGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (973)
Q Consensus 735 ~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~-----------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 803 (973)
+ ..++..+++..++||||||+|++.+ .+++.|+..|+.-. ...++++|++||.
T Consensus 324 i-----r~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~-- 387 (494)
T COG0464 324 I-----RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR-- 387 (494)
T ss_pred H-----HHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCC--
Confidence 2 3567777778889999999998742 58888999887422 3356889999998
Q ss_pred hhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 002068 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQV 881 (973)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~ 881 (973)
...++|+++. |||.+|.|++++.++..+|+..++.+. +. .-.
T Consensus 388 ----------------------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-------~~-~~~ 431 (494)
T COG0464 388 ----------------------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-------KP-PLA 431 (494)
T ss_pred ----------------------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-------CC-cch
Confidence 3346777877 999999999999999999999988531 11 112
Q ss_pred CHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 002068 882 TDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGI 919 (973)
Q Consensus 882 ~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~ 919 (973)
++-.++.|++. ...|....+..+++.+....+.+..
T Consensus 432 ~~~~~~~l~~~--t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 432 EDVDLEELAEI--TEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred hhhhHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 22333444442 2235567788888888777776654
No 27
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.3e-22 Score=211.03 Aligned_cols=197 Identities=25% Similarity=0.384 Sum_probs=158.9
Q ss_pred CCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+++++=|-++.++.+-+++ .-.++.++|||||||||||.||+++|... ++.|+.+..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvg 218 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVG 218 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEecc
Confidence 5667778887777766653 23567899999999999999999999997 999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCC---CchhhHHHHHhhhhc-------CCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPMLG-------RGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~g~i~iI~ 389 (973)
+.++ .+|.|+...-++++|..|+.. .|+|+||||||.+...+.. +|..+++..|.++|. +++|.+|+
T Consensus 219 SElV--qKYiGEGaRlVRelF~lArek-aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 219 SELV--QKYIGEGARLVRELFELAREK-APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred HHHH--HHHhccchHHHHHHHHHHhhc-CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 9998 579999999999999999875 6899999999999866543 366788888887773 78999999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|||..+ -+||||+| ||+ .|+|+.|+.+.+.+||+-...++....+++ ++.++..+.++.+ ..
T Consensus 296 ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g~sG-----Ad 360 (406)
T COG1222 296 ATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEGFSG-----AD 360 (406)
T ss_pred ecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCCCch-----HH
Confidence 999998 59999999 998 799999999999999998888765544443 4566777765533 24
Q ss_pred HHHHHHHHHhh
Q 002068 467 AIDLVDEAAAK 477 (973)
Q Consensus 467 a~~lld~a~~~ 477 (973)
.-.+.-+|+..
T Consensus 361 lkaictEAGm~ 371 (406)
T COG1222 361 LKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHhHH
Confidence 44455555543
No 28
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.88 E-value=5.8e-22 Score=220.10 Aligned_cols=228 Identities=19% Similarity=0.279 Sum_probs=183.3
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~ 730 (973)
++|++.+++.+.+.+....... .+|||+|++||||+.+|++|+....+.+.||+.+||+.+.+....+.+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~-------~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLD-------RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCC-------CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 5799999999999998765321 159999999999999999999998777899999999998776666788997
Q ss_pred CCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhcc
Q 002068 731 PPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (973)
Q Consensus 731 ~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~ 809 (973)
..| +.|... .-.+.+..+.+++||||||+.+++++|..|+++|++|.+....+......++.+|++||.+...+..
T Consensus 74 ~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 665 334321 2235667788999999999999999999999999999877655555555688999999986544333
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHHH
Q 002068 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAAI 886 (973)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~ 886 (973)
...|+++|++||+. .|.+|||. .+|+..+++.++.++..++... +...++++++
T Consensus 151 ----------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~ls~~a~ 207 (329)
T TIGR02974 151 ----------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLP-LFPGFTPQAR 207 (329)
T ss_pred ----------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCcCHHHH
Confidence 35689999999954 79999998 6899999999998876654322 1157999999
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 887 QLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 887 ~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+.|..+.|++| +|+|+++|++++..
T Consensus 208 ~~L~~y~WPGN--vrEL~n~i~~~~~~ 232 (329)
T TIGR02974 208 EQLLEYHWPGN--VRELKNVVERSVYR 232 (329)
T ss_pred HHHHhCCCCch--HHHHHHHHHHHHHh
Confidence 99999999888 89999999986643
No 29
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.88 E-value=1.2e-21 Score=216.10 Aligned_cols=260 Identities=23% Similarity=0.387 Sum_probs=188.8
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHH--HHccCCCC----CCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 641 LHLEEELHKRVVGQDPAVKSVAEAIQR--SRAGLSDP----HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 641 ~~l~~~l~~~v~Gq~~~i~~l~~~i~~--~~~~~~~~----~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
..+.+.|...|+||+++++.+..++.. .+.++..+ ..| .++||+||||||||++|+.||+.+ +.+|+.+|
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD 82 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CChheeec
Confidence 456678889999999999999999854 22222221 123 589999999999999999999999 78999999
Q ss_pred cccccch-h---hh------------------------------------hhhcCCC-----------------------
Q 002068 715 MSEYMEK-H---AV------------------------------------SRLIGAP----------------------- 731 (973)
Q Consensus 715 ~~~~~~~-~---~~------------------------------------~~l~G~~----------------------- 731 (973)
++.|.+. + +. ..+.+..
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHH
Confidence 9887652 1 00 0111100
Q ss_pred ----------------C--Cccccccc------------------------------------------------chhhH
Q 002068 732 ----------------P--GYVGYEEG------------------------------------------------GQLTE 745 (973)
Q Consensus 732 ----------------~--g~~g~~~~------------------------------------------------~~l~~ 745 (973)
. +..+...+ ....+
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 00000000 00112
Q ss_pred HHHh-CCCeEEEEccccccC------------HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCC
Q 002068 746 VVRR-RPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDE 812 (973)
Q Consensus 746 ~~~~-~~~~Vl~lDEid~l~------------~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~ 812 (973)
++.. ...+|||||||||+. ..||..||.++|.-.+...+ ..++..|.+|||+.-... ..
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~---~k---- 314 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHV---SK---- 314 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCC---CC----
Confidence 2343 378999999999986 23999999999976665544 468889999999876521 00
Q ss_pred CCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhcCCceecCHHHHHH
Q 002068 813 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQL 888 (973)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~~ 888 (973)
...+-|||.+||..++.+.+|+.+++.+|+. ..++.+...|...|+.+.|+++|++.
T Consensus 315 -------------------p~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 375 (443)
T PRK05201 315 -------------------PSDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRR 375 (443)
T ss_pred -------------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHH
Confidence 1226799999999999999999999999994 57788888888899999999999999
Q ss_pred HHhcCCC-----CCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 889 LGSLGYD-----PNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 889 L~~~~~~-----~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
|++.++. .+.|||.|+.++++++.+...++-- ..+..|.|+-+
T Consensus 376 IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~----~~~~~v~I~~~ 423 (443)
T PRK05201 376 IAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPD----MSGETVTIDAA 423 (443)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCC----CCCCEEEECHH
Confidence 9998776 6899999999999988776654321 13556666543
No 30
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=201.89 Aligned_cols=279 Identities=23% Similarity=0.354 Sum_probs=196.5
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCCC------CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEe
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD------PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI 713 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~------~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i 713 (973)
...+...|...|+||+.+++.|+-++..+...+.. ..-...++|+.||+|+|||.||+.||+.+ +-||..-
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiA 128 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIA 128 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeec
Confidence 34677788899999999999877665433221111 11122479999999999999999999999 8999999
Q ss_pred ccccccchhhhhhhcCCCCCcccccccchhhHHHHh-------CCCeEEEEccccccC--------------HHHHHHHH
Q 002068 714 DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR-------RPYAVILFDEIEKAH--------------SDVFNVFL 772 (973)
Q Consensus 714 ~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~Vl~lDEid~l~--------------~~v~~~Ll 772 (973)
|+..+++ .||+|.+..+.+..++.. +..+|+|||||||+. ..||..||
T Consensus 129 DATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALL 197 (408)
T COG1219 129 DATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALL 197 (408)
T ss_pred cccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHH
Confidence 9998865 579998776777777764 456899999999986 34999999
Q ss_pred HhhcCCeEec--CCCcE--------EeccCEEEEEecCC-Chhhhhcc-C-----CCCCC-c----cchHHHHHHHHH--
Q 002068 773 QILDDGRVTD--SQGRT--------VSFTNTVIIMTSNV-GSQYILNM-D-----DETFP-K----ETAYETIKQRVM-- 828 (973)
Q Consensus 773 ~~le~g~~~~--~~g~~--------v~~~~~iiI~tsN~-~~~~l~~~-~-----~~~~~-~----~~~~~~~~~~~~-- 828 (973)
.++|.-.... ..|++ +|.+|.+||+..-. |.+.+... . ++... . ......+...+.
T Consensus 198 KiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 198 KIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 9998543332 33554 55666676665543 33443322 1 11111 0 011112222222
Q ss_pred HHHHhccChhhhcccceEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHH
Q 002068 829 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVK 904 (973)
Q Consensus 829 ~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 904 (973)
+-++=.+-|||++|+..+..+.+++.+++.+|+. ..++.+...|...++.+.|+++|+..+++.+.....|||+|+
T Consensus 278 DLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLR 357 (408)
T COG1219 278 DLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLR 357 (408)
T ss_pred HHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHH
Confidence 2223356899999999999999999999999987 344555566666799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 905 RVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 905 r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
.+++..+.+.+.+.=- ...-.+|.|+-+
T Consensus 358 sI~E~~lld~MfelPs---~~~v~~v~I~~~ 385 (408)
T COG1219 358 SIIEELLLDVMFELPS---LEDVEKVVITEE 385 (408)
T ss_pred HHHHHHHHHHHhhCCC---CCCceEEEEeHH
Confidence 9999988887765321 122445555544
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=196.94 Aligned_cols=189 Identities=26% Similarity=0.386 Sum_probs=150.9
Q ss_pred HHHhcCCCCCCCCchHHHHHHH---HHhc------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 247 AMASAGKLDPVIGRDDEIRRCI---QILS------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 247 ~~~~~~~l~~iiG~~~~i~~li---~~l~------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
+....-+|+++|||++..+.+- +.|. ...+.|+||+||||||||++|++||.+. +.+++.+
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~v 182 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLV 182 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEEe
Confidence 4445568999999998655544 3332 2456899999999999999999999997 8899999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC----chhhHHHHHhhhhc----CCCEEEEE
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLG----RGELRCIG 389 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~----~~~~~~~~L~~~l~----~g~i~iI~ 389 (973)
....+++ .++|+...+++++++.++.. .|||+||||+|.+.-.+.-. +..++.|.|+.-|+ +-.+..|+
T Consensus 183 kat~liG--ehVGdgar~Ihely~rA~~~-aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 183 KATELIG--EHVGDGARRIHELYERARKA-APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred chHHHHH--HHhhhHHHHHHHHHHHHHhc-CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 9999984 58999999999999999875 58999999999987443321 33567788887775 44789999
Q ss_pred ccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccccc
Q 002068 390 ATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i 458 (973)
+||.++ -+|+++++||. .|.|..|+.+|+..|++...+++... +... +++++..+.++.
T Consensus 260 aTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp--v~~~---~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--VDAD---LRYLAAKTKGMS 319 (368)
T ss_pred ecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc--cccC---HHHHHHHhCCCC
Confidence 999999 49999999997 89999999999999999988875432 2222 666777776653
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1.7e-21 Score=197.20 Aligned_cols=190 Identities=25% Similarity=0.318 Sum_probs=130.6
Q ss_pred hhcHHHHHhcCCCCCCCCchHHHHHHHHHh---cc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 242 GKDLTAMASAGKLDPVIGRDDEIRRCIQIL---SR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 242 ~~~l~~~~~~~~l~~iiG~~~~i~~li~~l---~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
..++.+..||.+|+++|||++.+..+.-.+ .. ....|+|||||||+||||||+.+|+++ +..+..
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~ 80 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKI 80 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEE
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEe
Confidence 356889999999999999998776654333 22 235689999999999999999999998 888887
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 317 l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
++...+. ..+ .+..++..+ ..+.||||||||++. ...+++|.+++|.+
T Consensus 81 ~sg~~i~----k~~----dl~~il~~l---~~~~ILFIDEIHRln--------k~~qe~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 81 TSGPAIE----KAG----DLAAILTNL---KEGDILFIDEIHRLN--------KAQQEILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp EECCC------SCH----HHHHHHHT-----TT-EEEECTCCC----------HHHHHHHHHHHHCSEEEEEBSSSSS-B
T ss_pred ccchhhh----hHH----HHHHHHHhc---CCCcEEEEechhhcc--------HHHHHHHHHHhccCeEEEEeccccccc
Confidence 7654332 112 234444444 345699999999998 56888999999866
Q ss_pred -------CEEEEEccCchHHHhhhccCHHHHccCceE-EecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 384 -------ELRCIGATTLDEYRKYIEKDPALERRFQQV-YVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 384 -------~i~iI~at~~~~~~~~~~~d~al~~Rf~~i-~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
++.+|||||... .+.++|++||..+ .+..++.++..+|+..-.. ..++.+++++..+++..|
T Consensus 142 ~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~----~l~i~i~~~~~~~Ia~rs- 211 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR----ILNIEIDEDAAEEIARRS- 211 (233)
T ss_dssp EEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH----CTT-EE-HHHHHHHHHCT-
T ss_pred eeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHHHhc-
Confidence 357899999987 5889999999854 7999999998888865554 478999999999999888
Q ss_pred cccCCCCCchHHHHHHHHHH
Q 002068 456 RYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 456 ~~i~~r~~p~~a~~lld~a~ 475 (973)
|.-|.-|.+++..+-
T Consensus 212 -----rGtPRiAnrll~rvr 226 (233)
T PF05496_consen 212 -----RGTPRIANRLLRRVR 226 (233)
T ss_dssp -----TTSHHHHHHHHHHHC
T ss_pred -----CCChHHHHHHHHHHH
Confidence 466888888876543
No 33
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.86 E-value=1.4e-20 Score=209.55 Aligned_cols=230 Identities=17% Similarity=0.273 Sum_probs=181.0
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+..++|.+..++.+.+.+....... .+|||+|++||||+++|++|+......+.||+.+||+.+.+....+.+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~-------~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLD-------KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCC-------CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 4579999999999999998765321 159999999999999999999888767789999999998765555778
Q ss_pred cCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 728 ~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
||...+ +.|... ...+.+..+.+++||||||+.+++.+|..|++++++|.+....+......++.||+||+.....+
T Consensus 78 fg~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l 155 (326)
T PRK11608 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (326)
T ss_pred ccccccccCCccc--ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHH
Confidence 887654 233221 12345677888999999999999999999999999998765444333335789999999865444
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
.. ...|+++|++||. ..|.+|||. .+|+..++..++.++..++... +...+++
T Consensus 156 ~~-----------------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~~s~ 211 (326)
T PRK11608 156 VA-----------------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLP-LFPGFTE 211 (326)
T ss_pred HH-----------------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCCCH
Confidence 33 3568999999995 489999998 4799999999998876554321 1247999
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 884 AAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 884 ~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
+++..|..+.|++| .|+|++++++++.
T Consensus 212 ~al~~L~~y~WPGN--vrEL~~vl~~a~~ 238 (326)
T PRK11608 212 RARETLLNYRWPGN--IRELKNVVERSVY 238 (326)
T ss_pred HHHHHHHhCCCCcH--HHHHHHHHHHHHH
Confidence 99999999999988 8999999998654
No 34
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.85 E-value=1e-20 Score=225.64 Aligned_cols=228 Identities=19% Similarity=0.338 Sum_probs=184.4
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+..++|++.+++.+.+.+....... .+|||+||+||||+++|++||+...+.+.||+.+||+.+.+....+.+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~-------~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSN-------STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcC-------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHH
Confidence 4689999999999999998765311 169999999999999999999998877899999999999777667888
Q ss_pred cCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 728 ~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
||...| +.|... .-.+.+..+.+++||||||+.+++++|..|+++|++|.+....+.+....++.+|+||+.+...+
T Consensus 268 fg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 268 FGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred cCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 998765 333211 12234566778999999999999999999999999998876555444445788999999865433
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
.. ...|+++|++|++. .|.+|||. .+|+..+++.++.++..++. ..+.+++
T Consensus 346 ~~-----------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~---~~~~~s~ 399 (534)
T TIGR01817 346 VA-----------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG---RPLTITP 399 (534)
T ss_pred HH-----------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC---CCCCCCH
Confidence 22 45699999999965 68999998 68999999999988766543 3368999
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 884 AAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 884 ~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++++.|..+.|++| .|+|++++++++.
T Consensus 400 ~a~~~L~~~~WPGN--vrEL~~v~~~a~~ 426 (534)
T TIGR01817 400 SAIRVLMSCKWPGN--VRELENCLERTAT 426 (534)
T ss_pred HHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 99999999999888 8999999998764
No 35
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.85 E-value=1.1e-20 Score=208.36 Aligned_cols=260 Identities=26% Similarity=0.410 Sum_probs=187.0
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHH--HccC----CCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 641 LHLEEELHKRVVGQDPAVKSVAEAIQRS--RAGL----SDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 641 ~~l~~~l~~~v~Gq~~~i~~l~~~i~~~--~~~~----~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
..+.+.|.+.|+||+++++.+..++... +... .....| .++||+||||||||++|++||+.+ +.+|+.+|
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 3566778899999999999999988753 2222 112234 489999999999999999999999 78999999
Q ss_pred cccccch-h---hh----hh--------------------------------hcCCCCCc--------------------
Q 002068 715 MSEYMEK-H---AV----SR--------------------------------LIGAPPGY-------------------- 734 (973)
Q Consensus 715 ~~~~~~~-~---~~----~~--------------------------------l~G~~~g~-------------------- 734 (973)
+..+.+. + +. .. |+......
T Consensus 80 at~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (441)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKK 159 (441)
T ss_pred cceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHH
Confidence 8877531 1 00 01 11000000
Q ss_pred ----------------------c------ccccc------------------------------------------chhh
Q 002068 735 ----------------------V------GYEEG------------------------------------------GQLT 744 (973)
Q Consensus 735 ----------------------~------g~~~~------------------------------------------~~l~ 744 (973)
. |.... ....
T Consensus 160 l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~ 239 (441)
T TIGR00390 160 LREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQ 239 (441)
T ss_pred HhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 0 00000 0001
Q ss_pred HHHHh-CCCeEEEEccccccCH------------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCC
Q 002068 745 EVVRR-RPYAVILFDEIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDD 811 (973)
Q Consensus 745 ~~~~~-~~~~Vl~lDEid~l~~------------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~ 811 (973)
+++.. ...+|||||||||+.. .||..||.++|...+.-.+ ..++..|.+|||+.-... ..
T Consensus 240 ~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~---~k--- 312 (441)
T TIGR00390 240 EAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQL---AK--- 312 (441)
T ss_pred HHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCC---CC---
Confidence 12222 5678999999999862 3999999999976666544 468889999999876521 00
Q ss_pred CCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhcCCceecCHHHHH
Q 002068 812 ETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQ 887 (973)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~ 887 (973)
...+-|||.+||..++.+.+|+.+++.+|+. ..++.+...|...|+.+.|+++|+.
T Consensus 313 --------------------p~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~ 372 (441)
T TIGR00390 313 --------------------PSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIK 372 (441)
T ss_pred --------------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHH
Confidence 1226799999999999999999999999994 5677788888888999999999999
Q ss_pred HHHhcCCC-----CCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 888 LLGSLGYD-----PNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 888 ~L~~~~~~-----~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
.|++.++. .+.|||.|+.++++.+.+...+.-- ..+..|.|+.+
T Consensus 373 ~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~----~~~~~v~I~~~ 421 (441)
T TIGR00390 373 RIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPD----LSGQNITIDAD 421 (441)
T ss_pred HHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCC----CCCCEEEECHH
Confidence 99998775 6899999999999988776665321 23556666543
No 36
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.85 E-value=1.6e-20 Score=219.23 Aligned_cols=227 Identities=17% Similarity=0.297 Sum_probs=183.2
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+..++|++.+++.+...+....... .+|||.|++||||+.+|++|++...+.+.||+.+||+.+.+....+.+
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~-------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSD-------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCC-------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 4569999999999999998754321 169999999999999999999998778899999999999887777889
Q ss_pred cCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 728 ~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
||...| +.|...+ .-.+.+..+.+++||||||+.+++.+|..|+++|+++.+....+......++.+|++||......
T Consensus 284 FG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~ 362 (526)
T TIGR02329 284 FGYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA 362 (526)
T ss_pred cCCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHH
Confidence 998765 3343221 23456777889999999999999999999999999998776554444445788999999865443
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
.. ...|+++|++|++ ..|.+|||. .+|+..++..++.++.... .+.+++
T Consensus 363 v~-----------------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-----~~~~~~ 414 (526)
T TIGR02329 363 VQ-----------------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL-----RLPDSE 414 (526)
T ss_pred hh-----------------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc-----CCCCCH
Confidence 32 4568999999996 479999998 4799999999998865432 245899
Q ss_pred HHHHH-------HHhcCCCCCCCccHHHHHHHHHHH
Q 002068 884 AAIQL-------LGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 884 ~a~~~-------L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
+++.. |..+.|++| .|+|++++++++.
T Consensus 415 ~a~~~~~~~~~~L~~y~WPGN--vrEL~nvier~~i 448 (526)
T TIGR02329 415 AAAQVLAGVADPLQRYPWPGN--VRELRNLVERLAL 448 (526)
T ss_pred HHHHHhHHHHHHHHhCCCCch--HHHHHHHHHHHHH
Confidence 99888 999888887 8999999999764
No 37
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.85 E-value=1.9e-20 Score=218.12 Aligned_cols=227 Identities=18% Similarity=0.269 Sum_probs=179.1
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHH--------hcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASY--------MFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~--------l~~~~~~~~~i~~~~~~ 719 (973)
+..++|++.+++.+...+....... .++||+|++||||+.+|++|++. ..+.+.||+.+||+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~-------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSS-------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCC-------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 4569999999999999988754321 16999999999999999999998 66678899999999998
Q ss_pred chhhhhhhcCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEe
Q 002068 720 EKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (973)
Q Consensus 720 ~~~~~~~l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 798 (973)
+....+.|||...| +.|...+ .-.+.+..+.+++||||||+.+++..|..|+++|+++.+....+...-..++.+|++
T Consensus 291 e~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaa 369 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 369 (538)
T ss_pred hhhHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEe
Confidence 87777899998766 3443221 123567788899999999999999999999999999988765554444458899999
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhc
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
||.+...+.+ ...|+++|++|++. .|.+|||. .+|+..++..++.++...+.
T Consensus 370 t~~~L~~~v~-----------------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~-- 424 (538)
T PRK15424 370 THCDLEEDVR-----------------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS-- 424 (538)
T ss_pred cCCCHHHHHh-----------------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC--
Confidence 9986544333 35699999999965 78999998 46899999999987654332
Q ss_pred CCceecCHHHH-------HHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 876 KMKMQVTDAAI-------QLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 876 ~~~l~~~~~a~-------~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
..++++++ +.|..+.|++| .|+|++++++++.
T Consensus 425 ---~~~~~~a~~~~~~a~~~L~~y~WPGN--vREL~nvier~~i 463 (538)
T PRK15424 425 ---APFSAALRQGLQQCETLLLHYDWPGN--VRELRNLMERLAL 463 (538)
T ss_pred ---CCCCHHHHHhhHHHHHHHHhCCCCch--HHHHHHHHHHHHH
Confidence 23555554 78888888877 8999999999664
No 38
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.84 E-value=4.5e-20 Score=217.95 Aligned_cols=230 Identities=20% Similarity=0.298 Sum_probs=184.6
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
...++|++..++.+.+.+....... .+|||+|++||||+.+|++|+......+.+|+.+||+.+.+....+.+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~-------~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASD-------LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCC-------CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 3679999999999999998765321 169999999999999999999998877889999999999876666788
Q ss_pred cCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 728 ~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
||...| +.|... .-.+.+..+.+++||||||+.+++++|..|+++++++.+....+......++.||++||......
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 336 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 336 (509)
T ss_pred cCccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHH
Confidence 997655 333221 12234667888999999999999999999999999998765444444446889999999865443
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
.. ...|+++|++|+.. .|.+|||. .+|+..++..++.++..++... .+.+++
T Consensus 337 ~~-----------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~ 391 (509)
T PRK05022 337 VR-----------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLR--SLRLSP 391 (509)
T ss_pred HH-----------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCC--CCCCCH
Confidence 32 45699999999965 59999998 4689999999998876655432 468999
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 884 AAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 884 ~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
++++.|..+.|++| .|+|+++|++++..
T Consensus 392 ~a~~~L~~y~WPGN--vrEL~~~i~ra~~~ 419 (509)
T PRK05022 392 AAQAALLAYDWPGN--VRELEHVISRAALL 419 (509)
T ss_pred HHHHHHHhCCCCCc--HHHHHHHHHHHHHh
Confidence 99999999999888 79999999986643
No 39
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=7.3e-20 Score=185.33 Aligned_cols=182 Identities=15% Similarity=0.338 Sum_probs=123.5
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~ 725 (973)
.-.++++||++.+..+.-.++.++. .+.++.+++|+||||+|||+||+.||+.+ +.+|..++...+...
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~---- 89 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKA---- 89 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SC----
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhH----
Confidence 3468999999999998777776543 22345589999999999999999999999 667766655433221
Q ss_pred hhcCCCCCcccccccchhhHHHHh-CCCeEEEEccccccCHHHHHHHHHhhcCCeEec--CCC-----cEEeccCEEEEE
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD--SQG-----RTVSFTNTVIIM 797 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~--~~g-----~~v~~~~~iiI~ 797 (973)
+.+...+.. .++.||||||||++++.+|+.|+.+||+|.+.. +.| .+++.+++.+|.
T Consensus 90 ---------------~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 90 ---------------GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp ---------------HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ---------------HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 233333332 456799999999999999999999999998743 333 356667888888
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM 877 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~ 877 (973)
+|+. ...++++|.+||..+..+..|+.+++.+|+.+.. .-.
T Consensus 155 ATTr------------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a---------~~l 195 (233)
T PF05496_consen 155 ATTR------------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA---------RIL 195 (233)
T ss_dssp EESS------------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCC---------HCT
T ss_pred eecc------------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHH---------HHh
Confidence 7776 3347889999998888999999999999998644 234
Q ss_pred ceecCHHHHHHHHhc
Q 002068 878 KMQVTDAAIQLLGSL 892 (973)
Q Consensus 878 ~l~~~~~a~~~L~~~ 892 (973)
.+.+++++..+|+..
T Consensus 196 ~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 196 NIEIDEDAAEEIARR 210 (233)
T ss_dssp T-EE-HHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHh
Confidence 689999999999996
No 40
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.6e-19 Score=212.65 Aligned_cols=180 Identities=24% Similarity=0.297 Sum_probs=136.2
Q ss_pred CCCCchHHHHHHHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc---
Q 002068 256 PVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI--- 323 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~--- 323 (973)
.||||++.+..+.+.+.+ ++..++||.||+|||||.||++||..+..+ ...++++|||.+.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHHH
Confidence 499999999999998754 222467999999999999999999999443 4679999999884
Q ss_pred -------ccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 324 -------AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 324 -------~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
+...|+|--+. ..+.++.+..+.+|+++|||+... .++.|+|+++++.|
T Consensus 565 sVSrLIGaPPGYVGyeeG---G~LTEaVRr~PySViLlDEIEKAH--------pdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEG---GQLTEAVRRKPYSVILLDEIEKAH--------PDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHhCCCCCCceeccc---cchhHhhhcCCCeEEEechhhhcC--------HHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 23336664332 234455556678999999999887 78999999999876
Q ss_pred CEEEEEccCchH-------------------------HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh-
Q 002068 384 ELRCIGATTLDE-------------------------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL- 436 (973)
Q Consensus 384 ~i~iI~at~~~~-------------------------~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~- 436 (973)
+.+||+|+|--. .+++ ..|+|++|++ .|.|.+.+.++..+|+...+.++..
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~--F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~ 711 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKH--FRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR 711 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhh--CCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 557888887321 1122 3599999998 6788888999999998777665442
Q ss_pred ----hcCCccCHHHHHHHHHhcc
Q 002068 437 ----HHGVRISDSALVEAAILSD 455 (973)
Q Consensus 437 ----~~~v~i~~~~l~~l~~~s~ 455 (973)
...+.+++++..++++...
T Consensus 712 L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 712 LAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred HHhCCceEEECHHHHHHHHHhcc
Confidence 2356789999998887653
No 41
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.84 E-value=5.7e-20 Score=216.94 Aligned_cols=230 Identities=19% Similarity=0.284 Sum_probs=183.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
-+..++|.+.+++.+...+++..... . ++||+|++||||+++|++++........||+.+||+.+.+....+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~----~---pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLD----A---PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCC----C---CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 45789999999999998887654321 1 5999999999999999999999887788999999999987766788
Q ss_pred hcCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhh
Q 002068 727 LIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 805 (973)
Q Consensus 727 l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 805 (973)
+||..+| |.|...+ -.+.+..+.+++||||||+.+++..|..|++++++|.++...+......++.||+||+.....
T Consensus 275 lFG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 275 LFGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred hcCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 8997664 3333221 234566788899999999999999999999999999876654444444578899999986654
Q ss_pred hhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 002068 806 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVT 882 (973)
Q Consensus 806 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~ 882 (973)
+.+ ...|+++|++|+. ..|.+|||. .+|+..++..++.++..+.... .+.++
T Consensus 353 l~~-----------------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls 407 (520)
T PRK10820 353 LVQ-----------------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLA 407 (520)
T ss_pred HHH-----------------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcC
Confidence 443 3558999999986 479999998 4689999999998876544322 35799
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 883 DAAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 883 ~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++++++|..+.|++| .|+|++++.+++.
T Consensus 408 ~~a~~~L~~y~WPGN--vreL~nvl~~a~~ 435 (520)
T PRK10820 408 ADLNTVLTRYGWPGN--VRQLKNAIYRALT 435 (520)
T ss_pred HHHHHHHhcCCCCCH--HHHHHHHHHHHHH
Confidence 999999999999888 8999999988664
No 42
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-19 Score=193.01 Aligned_cols=186 Identities=22% Similarity=0.359 Sum_probs=143.5
Q ss_pred CCCCCCCCchHHHHHHHHHh------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 252 GKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
-+.++|.|.++..+.+-+.+ .+++..++|++||||||||.||+++|.++ +..|+.+..
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSs 278 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSS 278 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEech
Confidence 36788999887776666543 35677899999999999999999999998 888998877
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchh----hHHHHHhhhhc-------CCC-EEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAM----DAGNLLKPMLG-------RGE-LRC 387 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~----~~~~~L~~~l~-------~g~-i~i 387 (973)
+.+. ++|+|+.|+-++-+|+.++.. .|.+|||||||.|...+++.+.- .+.+-|+..|+ ..+ |.+
T Consensus 279 stlt--SKwRGeSEKlvRlLFemARfy-APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 279 STLT--SKWRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hhhh--hhhccchHHHHHHHHHHHHHh-CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 7776 679999999999999998865 58899999999999777665333 33333433332 223 556
Q ss_pred EEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
++|||.+. ++|.+|+|||. +|+|+.|+.+.|..+++..+...+.. ++--++.+++.+.+|.+.
T Consensus 356 LAATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 356 LAATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----DPVNLEDLAERSEGYSGA 419 (491)
T ss_pred EeccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----CCccHHHHHHHhcCCChH
Confidence 66777764 89999999998 79999999999999998877643322 333467788888888654
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=1.7e-19 Score=196.21 Aligned_cols=224 Identities=18% Similarity=0.330 Sum_probs=160.8
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHH-------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC----CC
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TE 707 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~-------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~----~~ 707 (973)
.+..+...|+..++|+++++++|...+.. ...|...+..+ .+++|+||||||||++|+++|+.++. ..
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~-~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPG-LHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 35567778888999999999887765421 23455544333 37999999999999999999998853 23
Q ss_pred cceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc---------CHHHHHHHHHhhcCC
Q 002068 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDDG 778 (973)
Q Consensus 708 ~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l---------~~~v~~~Ll~~le~g 778 (973)
.+++.++++++.. .++|. .. ....+.+.++.++||||||++.+ ..++++.|++.|+++
T Consensus 92 ~~~~~v~~~~l~~-----~~~g~-------~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 92 GHLLTVTRDDLVG-----QYIGH-------TA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred CceEEecHHHHHH-----HHhcc-------ch-HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 4577777665422 22332 21 23456677788899999999986 467999999999863
Q ss_pred eEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHH
Q 002068 779 RVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQIS 858 (973)
Q Consensus 779 ~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~ 858 (973)
. .+++||++++... +.. .-..+|+|.+||+.+|.|+||+.+++.
T Consensus 159 ~-----------~~~~vI~ag~~~~-------------------~~~------~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 159 R-----------DDLVVIFAGYKDR-------------------MDK------FYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred C-----------CCEEEEEeCCcHH-------------------HHH------HHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 2 4678888876511 100 112469999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCHHHH----HHHHhcCCCCCCC-ccHHHHHHHHHHHHHHHHHHHc
Q 002068 859 SIVRLQLDRVQKRIADRKMKMQVTDAAI----QLLGSLGYDPNYG-ARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 859 ~I~~~~l~~~~~~~~~~~~~l~~~~~a~----~~L~~~~~~~~~g-aR~L~r~i~~~i~~~la~~~l~ 921 (973)
+|+..++.+. ...+++++. +++.+..+.+.+| +|.+++++++++...-.+.+.+
T Consensus 203 ~I~~~~l~~~---------~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 203 QIAKIMLEEQ---------QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHh---------cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998763 233555544 4555556667777 9999999999887776665554
No 44
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.5e-20 Score=209.65 Aligned_cols=177 Identities=27% Similarity=0.418 Sum_probs=145.1
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEE
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILf 353 (973)
.++..+|||||||||||++|+++|.+. ++.|+++...+++ ++|.|+.|..++.+|+.++.. .|+|+|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~--sk~vGeSEr~ir~iF~kAR~~-aP~IiF 532 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELF--SKYVGESERAIREVFRKARQV-APCIIF 532 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHH--HHhcCchHHHHHHHHHHHhhc-CCeEEe
Confidence 456789999999999999999999998 8999999999998 579999999999999999875 479999
Q ss_pred EccccccccCCCCCch---hhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHH
Q 002068 354 IDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 423 (973)
Q Consensus 354 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~ 423 (973)
+||||.+.+.+++++. ..+.+.|+..|+ ..+|.+|+|||.++ .+|+|+.| ||+ .|+|+.|+.+.|
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD-----MIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh-----hcCHHHcCCcccceeEeecCccHHHH
Confidence 9999999988865433 233444444443 55899999999998 69999999 998 689999999999
Q ss_pred HHHHHHHHHHHhhhcCCccCHH-HHHHHHHhcccccCCCCCchHHHHHHHHHHhhhh
Q 002068 424 ISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 424 ~~il~~~~~~~~~~~~v~i~~~-~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~ 479 (973)
++||+...+++. ++++ .++.++..+.+|.+. ...++..+|+..+.
T Consensus 608 ~~Ilk~~~kkmp------~~~~vdl~~La~~T~g~SGA-----el~~lCq~A~~~a~ 653 (693)
T KOG0730|consen 608 LEILKQCAKKMP------FSEDVDLEELAQATEGYSGA-----EIVAVCQEAALLAL 653 (693)
T ss_pred HHHHHHHHhcCC------CCccccHHHHHHHhccCChH-----HHHHHHHHHHHHHH
Confidence 999998887543 4444 577888888877543 66777777776543
No 45
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.83 E-value=8.5e-20 Score=191.24 Aligned_cols=225 Identities=20% Similarity=0.310 Sum_probs=189.8
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
-++.+++++..++.+....++...-.. ++|+.|++||||..+|++.+..+.+...||+.+||..+.+....+.
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDA-------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDA-------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESE 274 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCC-------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHH
Confidence 367789999999988888776543221 4999999999999999999999988999999999999999999999
Q ss_pred hcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 727 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 727 l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+||..+|..|+ .+++..+.++.+|+|||..++|..|..||..+.+|.++.-.+.+-.+-++.|||||......+
T Consensus 275 lFG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~l 348 (511)
T COG3283 275 LFGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVEL 348 (511)
T ss_pred HhcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHH
Confidence 99998874432 357778889999999999999999999999999999988766666677999999999876665
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
.+ +..|+.+|++|++. .+.+||+. .+++.-+++.++.++..++.-- ...+++
T Consensus 349 v~-----------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~pkl~~ 403 (511)
T COG3283 349 VQ-----------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP--RPKLAA 403 (511)
T ss_pred Hh-----------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC--CCccCH
Confidence 54 45689999999975 68888887 4688899999988877665433 468999
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 884 AAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 884 ~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.+.+|.++.|++| +|+|++.|.+++
T Consensus 404 ~~~~~L~~y~WpGN--VRqL~N~iyRA~ 429 (511)
T COG3283 404 DLLTVLTRYAWPGN--VRQLKNAIYRAL 429 (511)
T ss_pred HHHHHHHHcCCCcc--HHHHHHHHHHHH
Confidence 99999999999888 899999888854
No 46
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.83 E-value=7.1e-18 Score=194.79 Aligned_cols=168 Identities=21% Similarity=0.347 Sum_probs=122.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFD 758 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lD 758 (973)
.+||+||||||||++|+++|..+ +.+++.++++.+... |+|..+ ...++..++...++|||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~~------------~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFGG------------IVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhccc------------ccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 69999999999999999999998 789999999875432 333221 1345555667788999999
Q ss_pred cccccCH------------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHH
Q 002068 759 EIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQR 826 (973)
Q Consensus 759 Eid~l~~------------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~ 826 (973)
|||++.. .++..|++.|++. -.+++||+|||.
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~------------------------- 369 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANN------------------------- 369 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCC-------------------------
Confidence 9998643 2566777777641 146789999997
Q ss_pred HHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHH
Q 002068 827 VMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVK 904 (973)
Q Consensus 827 ~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 904 (973)
...++|+++ +|||.+|.++.|+.++..+|++.++.+.. . ...++.-++.|++. ...|...+|+
T Consensus 370 -----~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-------~-~~~~~~dl~~La~~--T~GfSGAdI~ 434 (489)
T CHL00195 370 -----IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-------P-KSWKKYDIKKLSKL--SNKFSGAEIE 434 (489)
T ss_pred -----hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-------C-CcccccCHHHHHhh--cCCCCHHHHH
Confidence 344778887 59999999999999999999999986521 0 01223335666664 4456677888
Q ss_pred HHHHHHHHHH
Q 002068 905 RVIQQYVENE 914 (973)
Q Consensus 905 r~i~~~i~~~ 914 (973)
+.+..+....
T Consensus 435 ~lv~eA~~~A 444 (489)
T CHL00195 435 QSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHH
Confidence 7777655443
No 47
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-19 Score=201.81 Aligned_cols=164 Identities=29% Similarity=0.446 Sum_probs=133.8
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEE
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILf 353 (973)
..+.++||+||||||||.||+++|.+. +..|+++....+. .+|+|+.|..++.+|..++.+ .|||+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~s-aPCVIF 609 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARAS-APCVIF 609 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhcC-CCeEEE
Confidence 457889999999999999999999997 8999999999988 579999999999999999875 589999
Q ss_pred EccccccccCCCCCch---hhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHH
Q 002068 354 IDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 423 (973)
Q Consensus 354 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~ 423 (973)
+||+|.|.+.++.++. ..+.|-|+..|+ +..|.+|+|||.++ -+|||++| ||+ .++++.|+.+++
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999988876644 345555555553 66899999999999 59999999 998 579999999999
Q ss_pred HHHHHHHHHHHhhhcCCccCHH-HHHHHHHhcc--cccC
Q 002068 424 ISILRGLRERYELHHGVRISDS-ALVEAAILSD--RYIS 459 (973)
Q Consensus 424 ~~il~~~~~~~~~~~~v~i~~~-~l~~l~~~s~--~~i~ 459 (973)
..||+.+.+. ++..++++ .++.++.... +|.+
T Consensus 685 ~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftG 719 (802)
T KOG0733|consen 685 VAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTG 719 (802)
T ss_pred HHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCch
Confidence 9999998873 33333332 3555665543 5543
No 48
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.3e-20 Score=201.38 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=156.4
Q ss_pred hcCCCCCCCCchH---HHHHHHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 250 SAGKLDPVIGRDD---EIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 250 ~~~~l~~iiG~~~---~i~~li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
..-+|+++.|.|+ +++.+++.|+. +-+.++||+||||||||.|||++|.+. +.+|+..
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~ 368 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYA 368 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEec
Confidence 3457999999986 77788887754 345789999999999999999999987 8899988
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhh---c----CCCEEEEEc
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML---G----RGELRCIGA 390 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l---~----~g~i~iI~a 390 (973)
..+.+. ..|+|....+++++|..++.+ .||||||||||.+-+.+......-+...|.++| + +..|++|||
T Consensus 369 sGSEFd--Em~VGvGArRVRdLF~aAk~~-APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 369 SGSEFD--EMFVGVGARRVRDLFAAAKAR-APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred cccchh--hhhhcccHHHHHHHHHHHHhc-CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 766664 458899999999999999875 589999999999987776543322333333333 3 447999999
Q ss_pred cCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHH
Q 002068 391 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a 467 (973)
||.++ .+|++|.| ||+ .|.++.|+..-|.+||...+.+.... -.++... +++-+.+|. ..+.
T Consensus 446 TNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~--~~VD~~i---iARGT~GFs-----GAdL 510 (752)
T KOG0734|consen 446 TNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD--EDVDPKI---IARGTPGFS-----GADL 510 (752)
T ss_pred cCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc--cCCCHhH---hccCCCCCc-----hHHH
Confidence 99999 79999999 998 69999999999999999888764432 2334443 355554443 3467
Q ss_pred HHHHHHHHhhhhhh
Q 002068 468 IDLVDEAAAKLKME 481 (973)
Q Consensus 468 ~~lld~a~~~~~~~ 481 (973)
.++++.|+-++...
T Consensus 511 aNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 511 ANLVNQAALKAAVD 524 (752)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888776654
No 49
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=7.4e-20 Score=202.15 Aligned_cols=230 Identities=17% Similarity=0.316 Sum_probs=180.1
Q ss_pred HHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-CCcceEEeccccccchh
Q 002068 644 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-TEEALVRIDMSEYMEKH 722 (973)
Q Consensus 644 ~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-~~~~~~~i~~~~~~~~~ 722 (973)
.......++|.+...+.+.+.++... |. .. ++|+.|++||||+.+|+.||....+ ...||+.+||+.|.+..
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a-----p~-~~-~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA-----PS-GL-PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC-----CC-CC-cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 33456789999999999999988622 11 11 6999999999999999999977766 58999999999999998
Q ss_pred hhhhhcCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCC
Q 002068 723 AVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 723 ~~~~l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 801 (973)
..+.|||...| |.|... .-.+.+..+.+++||+|||..++++.|..|+++||+|.++.-.+......++.+|++||.
T Consensus 146 ~~~eLFG~~kGaftGa~~--~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 146 QEAELFGHEKGAFTGAQG--GKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred HHHHHhccccceeecccC--CcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 88889999887 666332 335788999999999999999999999999999999999865565566678999999997
Q ss_pred ChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc-ccceEEEcCCCCH--HHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN-RVDEYIVFQPLDR--DQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~-R~d~~i~f~~l~~--~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
..... +... .+|++ |+..+|.+||+.. +|+..++..++.....++. ..
T Consensus 224 ~l~~~------------------------~~~g--~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~---~~ 274 (403)
T COG1221 224 DLEEA------------------------VLAG--ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLG---LP 274 (403)
T ss_pred CHHHH------------------------HHhh--cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcC---CC
Confidence 44221 1111 36777 5567899999984 5666667777766665543 33
Q ss_pred ee-cCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 879 MQ-VTDAAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 879 l~-~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+. .+++++..|..+.|++| .|+|++.|++.+..
T Consensus 275 ~~~~~~~a~~~L~~y~~pGN--irELkN~Ve~~~~~ 308 (403)
T COG1221 275 LSVDSPEALRALLAYDWPGN--IRELKNLVERAVAQ 308 (403)
T ss_pred CCCCCHHHHHHHHhCCCCCc--HHHHHHHHHHHHHH
Confidence 33 34699999999888888 89999999886643
No 50
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.82 E-value=6.1e-20 Score=190.27 Aligned_cols=201 Identities=21% Similarity=0.263 Sum_probs=162.5
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 323 (973)
-|+++|||.+|++++||+..++.+...+.++..+|.|||||||||||+.|+++|+.+.. +.+..+++.+++.+...
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDER 100 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccccc
Confidence 48999999999999999999999999999988999999999999999999999999955 34456778888877654
Q ss_pred ccccccchHHHHHHHHHHHHHHh---------CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccC
Q 002068 324 AGAKYRGEFEDRLKAVLKEVTES---------EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATT 392 (973)
Q Consensus 324 ~g~~~~g~~e~~l~~~~~~~~~~---------~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~ 392 (973)
+-. . ..++++. |..+... ...-|++|||+|.|. .++++.|++.+++ ...++|..||
T Consensus 101 Gis-v---vr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 101 GIS-V---VREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred ccc-c---hhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhh--------HHHHHHHHHHHhccccceEEEEEcC
Confidence 322 1 1112211 1222111 123699999999998 7899999999984 5789999999
Q ss_pred chHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
+.+ .+.+.+.+||+.+.|+....+.....|+.++.+ .++.+++++++.+++.|++-+. +|+..|+
T Consensus 168 yls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdLR------~Ait~Lq 232 (346)
T KOG0989|consen 168 YLS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDLR------RAITTLQ 232 (346)
T ss_pred Chh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHH------HHHHHHH
Confidence 987 688999999999999999999999999999984 7999999999999999986553 5677666
Q ss_pred HHHh
Q 002068 473 EAAA 476 (973)
Q Consensus 473 ~a~~ 476 (973)
.+.-
T Consensus 233 sls~ 236 (346)
T KOG0989|consen 233 SLSL 236 (346)
T ss_pred Hhhc
Confidence 5543
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.82 E-value=1.6e-18 Score=213.12 Aligned_cols=196 Identities=19% Similarity=0.257 Sum_probs=135.8
Q ss_pred CCCCchHHHHHHHHHhccC---------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc--
Q 002068 256 PVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~---------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-- 324 (973)
.++||+..++.+...+.+. +..++||+||||||||++|+.||+.+ +.+++.+|++.+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEKH 524 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhcc
Confidence 4899999999998877531 22357999999999999999999998 67899999887643
Q ss_pred --------cccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 325 --------GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 325 --------g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
...|.|.-+.. .+.+.+ +..+.+||||||+|.+. .++++.|+++++.|
T Consensus 525 ~~~~lig~~~gyvg~~~~~--~l~~~~-~~~p~~VvllDEieka~--------~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGG--LLTEAV-RKHPHCVLLLDEIEKAH--------PDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred cHHHHhcCCCCCcccchhh--HHHHHH-HhCCCeEEEEechhhcC--------HHHHHHHHHhhccCeeecCCCcccCCC
Confidence 12244432211 122223 34567899999999886 67899999999866
Q ss_pred CEEEEEccCchH--HH----------------h--hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh---hc-
Q 002068 384 ELRCIGATTLDE--YR----------------K--YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---HH- 438 (973)
Q Consensus 384 ~i~iI~at~~~~--~~----------------~--~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~---~~- 438 (973)
+.++|+|||... .. . .-.+.|+|..||+ .|.|.+.+.++..+|++..+.++.. ..
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345888887531 00 0 0125689999998 5778888999999999887765432 12
Q ss_pred -CCccCHHHHHHHHHhc-ccccCCCCCchHHHHHHH
Q 002068 439 -GVRISDSALVEAAILS-DRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 439 -~v~i~~~~l~~l~~~s-~~~i~~r~~p~~a~~lld 472 (973)
.+.+++++++++++.+ ...++.|.+.....+.+.
T Consensus 674 ~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred CeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 3678999999999864 233344544333333333
No 52
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.6e-19 Score=192.10 Aligned_cols=224 Identities=20% Similarity=0.359 Sum_probs=163.0
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-------hCCC
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPY 752 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~ 752 (973)
.++|+.||+|+|||.||+.||+.+ +-||...||..+.. .||+|.+-...+..++. ++..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 369999999999999999999999 89999999999865 57998765555555554 4556
Q ss_pred eEEEEccccccC--------------HHHHHHHHHhhcCCeEecC--------CC--cEEeccCEEEEEecCC-Chhhh-
Q 002068 753 AVILFDEIEKAH--------------SDVFNVFLQILDDGRVTDS--------QG--RTVSFTNTVIIMTSNV-GSQYI- 806 (973)
Q Consensus 753 ~Vl~lDEid~l~--------------~~v~~~Ll~~le~g~~~~~--------~g--~~v~~~~~iiI~tsN~-~~~~l- 806 (973)
+|+||||+||+. ..||..||.++|.-.+..+ .| -.+|..|.+||+..-. +.+.+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 899999999876 3599999999985444332 12 2467788888887653 33332
Q ss_pred hcc-----CCC-CC----------C--ccchHHHHHHHHHHH------HHhccChhhhcccceEEEcCCCCHHHHHHHHH
Q 002068 807 LNM-----DDE-TF----------P--KETAYETIKQRVMDA------ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 862 (973)
Q Consensus 807 ~~~-----~~~-~~----------~--~~~~~~~~~~~~~~~------l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~ 862 (973)
.+. .++ .+ . ....-..-+..+.+. +.-.+-|||.+||-.+|+|.+|+++++.+|+.
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 111 010 00 0 000000111112221 12245799999999999999999999999987
Q ss_pred ----HHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHH
Q 002068 863 ----LQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAK 917 (973)
Q Consensus 863 ----~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~ 917 (973)
..+..+...|...++.+.++++|++.+++.+...+.|||+|+.++++++.+++.+
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 3345555566667899999999999999999999999999999999988887653
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.82 E-value=7.5e-20 Score=191.82 Aligned_cols=186 Identities=24% Similarity=0.349 Sum_probs=144.4
Q ss_pred hhhcHHHHHhcCCCCCCCCchH------HHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeE
Q 002068 241 YGKDLTAMASAGKLDPVIGRDD------EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (973)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~------~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (973)
...||.+++||.+++++|||+. .++.+++ ...-++++|+||||||||+||+.|+..-... ...|
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ie---q~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrf 193 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIE---QNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRF 193 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHH---cCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEE
Confidence 3459999999999999999876 4454444 4677899999999999999999999875111 2345
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEc
Q 002068 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGA 390 (973)
Q Consensus 315 ~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~----~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~a 390 (973)
+++ +...++.. .++++|+.+.+ .....||||||||++.. ..++.+++.++.|.|.+|||
T Consensus 194 vel--SAt~a~t~-------dvR~ife~aq~~~~l~krkTilFiDEiHRFNk--------sQQD~fLP~VE~G~I~lIGA 256 (554)
T KOG2028|consen 194 VEL--SATNAKTN-------DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK--------SQQDTFLPHVENGDITLIGA 256 (554)
T ss_pred EEE--eccccchH-------HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh--------hhhhcccceeccCceEEEec
Confidence 555 44444332 56777776664 24578999999999974 45778999999999999999
Q ss_pred cCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhc---------CCccCHHHHHHHHHhccc
Q 002068 391 TTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHH---------GVRISDSALVEAAILSDR 456 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~---------~v~i~~~~l~~l~~~s~~ 456 (973)
||.++- |.++.+|.+||..+.+...+.+....||......+.... .+.+++.++++++.++.+
T Consensus 257 TTENPS---Fqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 257 TTENPS---FQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred ccCCCc---cchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 999885 789999999999999999999999999976554333221 245788899999988874
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.2e-19 Score=203.23 Aligned_cols=204 Identities=19% Similarity=0.179 Sum_probs=159.2
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.+|.++|||.+|+++||++..++.+...+..+...| +||+||+||||||+|+.+|+.+.+...+..
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 578999999999999999999999888887766655 699999999999999999999865321110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|... ..| ...++.+.+.+.. .++..|+||||+|.|. .+++|.|+..++.
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 0112355555422 111 2235555555543 2346799999999997 5678888888886
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+++|++||... .+.+++++||+.+.|..++.++..+.++.++.. .++.++++++..++..|.+-
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd----- 215 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS----- 215 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh-----
Confidence 7899999999865 688999999999999999999999988888874 67899999999999999754
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
+.+|+.++|.+++.
T Consensus 216 -~RdAL~lLeq~i~~ 229 (484)
T PRK14956 216 -VRDMLSFMEQAIVF 229 (484)
T ss_pred -HHHHHHHHHHHHHh
Confidence 45799999988754
No 55
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.82 E-value=2.4e-19 Score=218.66 Aligned_cols=227 Identities=16% Similarity=0.280 Sum_probs=181.0
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
.+..++|.+.++..+.+.+....... .++||+|++||||+++|++|++...+...||+.+||+.+......+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~-------~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~e 395 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSS-------FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEE 395 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcC-------CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHH
Confidence 35679999999999988888755321 15999999999999999999999977788999999999987666678
Q ss_pred hcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 727 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 727 l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
++|...+.. . +...+.+..+.+++||||||+.+++++|..|+++|+++.++...+.+....++.+|+|||.+...+
T Consensus 396 lfg~~~~~~---~-~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~ 471 (638)
T PRK11388 396 FLGSDRTDS---E-NGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAML 471 (638)
T ss_pred hcCCCCcCc---c-CCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHH
Confidence 898653221 1 112334566788999999999999999999999999998876554444445788999999865443
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCCH--HHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDR--DQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~~--~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
.+ ...|+++|++|+.. .|.+|||.. +|+..++..++.++..++. ..+.+++
T Consensus 472 ~~-----------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~---~~~~~s~ 525 (638)
T PRK11388 472 VE-----------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFS---TRLKIDD 525 (638)
T ss_pred Hh-----------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhC---CCCCcCH
Confidence 33 35689999999965 689999984 6999999999988765443 2467999
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 884 AAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 884 ~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++++.|..+.|++| .|+|++++++++.
T Consensus 526 ~a~~~L~~y~WPGN--vreL~~~l~~~~~ 552 (638)
T PRK11388 526 DALARLVSYRWPGN--DFELRSVIENLAL 552 (638)
T ss_pred HHHHHHHcCCCCCh--HHHHHHHHHHHHH
Confidence 99999999999988 7999999998553
No 56
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.81 E-value=6.1e-19 Score=216.21 Aligned_cols=228 Identities=18% Similarity=0.293 Sum_probs=181.9
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++|++.+++.+.+.+....... .++||+||+|||||++|++|+......+.+|+.+||..+......+.++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~-------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSD-------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCC-------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 579999999999999988754321 1699999999999999999999987778899999999987655567888
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 729 GAPPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 729 G~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
|+..+. .|.. ....+.+..+.+++||||||+.+++++|..|+++|+++.+....+......++.+|+||+.+...+.
T Consensus 449 g~~~~~~~g~~--~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 526 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526 (686)
T ss_pred Ccccccccccc--cchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHH
Confidence 876542 2321 1223456778889999999999999999999999999987765544444568899999998654433
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
. ...|+++|++|+.. .|.+|||. .+|+..+++.++.++..++... ...++++
T Consensus 527 ~-----------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~--~~~~s~~ 581 (686)
T PRK15429 527 A-----------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN--IDSIPAE 581 (686)
T ss_pred H-----------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCC--CCCcCHH
Confidence 2 45689999999965 68999998 5799999999998876654332 1369999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
+++.|..+.|++| .|+|+++|++++.
T Consensus 582 al~~L~~y~WPGN--vrEL~~~i~~a~~ 607 (686)
T PRK15429 582 TLRTLSNMEWPGN--VRELENVIERAVL 607 (686)
T ss_pred HHHHHHhCCCCCc--HHHHHHHHHHHHH
Confidence 9999999999888 8999999998764
No 57
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.81 E-value=7.2e-18 Score=209.56 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=137.4
Q ss_pred CCCCCchHHHHHHHHHhccC-------C--CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-
Q 002068 255 DPVIGRDDEIRRCIQILSRR-------T--KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA- 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~-------~--~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~- 324 (973)
..|+||+..++.+...+.+. . ..++||+||+|||||++|+.||+.+... +..++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 35899999999998877431 1 1246899999999999999999998433 45788999877632
Q ss_pred ---------cccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------------
Q 002068 325 ---------GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (973)
Q Consensus 325 ---------g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------ 383 (973)
...|.|..+.. .+.+.++ ..+.+|++|||+|.+. .++++.|+++++.|
T Consensus 582 ~~~~~l~g~~~gyvg~~~~~--~l~~~~~-~~p~~VvllDeieka~--------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEGG--QLTEAVR-KKPYTVVLFDEIEKAH--------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCccc--hHHHHHH-hCCCeEEEECChhhCC--------HHHHHHHHHHhccCceecCCCcEEec
Confidence 12244422211 2233333 3456899999999886 67899999999865
Q ss_pred -CEEEEEccCchH-----------------------HHh---------hhccCHHHHccCc-eEEecCCCHHHHHHHHHH
Q 002068 384 -ELRCIGATTLDE-----------------------YRK---------YIEKDPALERRFQ-QVYVDQPNVEDTISILRG 429 (973)
Q Consensus 384 -~i~iI~at~~~~-----------------------~~~---------~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~ 429 (973)
+.++|+|||... |.. .-...|+|.+|++ .|.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 456888877421 000 0014589999996 678888899999999977
Q ss_pred HHHHHhh---hc--CCccCHHHHHHHHHhc-ccccCCCCCchHHHHHHHHHHhh
Q 002068 430 LRERYEL---HH--GVRISDSALVEAAILS-DRYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 430 ~~~~~~~---~~--~v~i~~~~l~~l~~~s-~~~i~~r~~p~~a~~lld~a~~~ 477 (973)
.+..+.. .+ .+.++++++.++++.. ..-.+.|.+.......+....+.
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 7665421 22 4678999999998863 22233454444443444444443
No 58
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=1.1e-18 Score=190.11 Aligned_cols=221 Identities=19% Similarity=0.331 Sum_probs=158.4
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHH-------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC----Cc
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EE 708 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~-------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~----~~ 708 (973)
++.+.+.+...++|+++++++|...+.. .+.|+.. ..|..+++|+||||||||++|+++|+.++.. ..
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 3445556667789999999988765432 2334442 3344579999999999999999999988532 34
Q ss_pred ceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc---------CHHHHHHHHHhhcCCe
Q 002068 709 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDDGR 779 (973)
Q Consensus 709 ~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l---------~~~v~~~Ll~~le~g~ 779 (973)
+++.++++++.. .++|.. . ..+.+.+.++.++||||||++.+ ..++++.|++.|++++
T Consensus 92 ~~v~v~~~~l~~-----~~~g~~-------~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~ 158 (284)
T TIGR02880 92 HLVSVTRDDLVG-----QYIGHT-------A-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR 158 (284)
T ss_pred eEEEecHHHHhH-----hhcccc-------h-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC
Confidence 688888765422 233322 1 23456777788899999999977 3678999999998632
Q ss_pred EecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHH
Q 002068 780 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 859 (973)
Q Consensus 780 ~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~ 859 (973)
.++++|++++... .+. .-.++|+|.+||+..|.|+||+.+++..
T Consensus 159 -----------~~~~vI~a~~~~~----------------~~~---------~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 159 -----------DDLVVILAGYKDR----------------MDS---------FFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred -----------CCEEEEEeCCcHH----------------HHH---------HHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 4678888887521 000 1125899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc-------CCCCCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 860 IVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL-------GYDPNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 860 I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~-------~~~~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
|+..++++. ...+++++++.+.++ .|++| +|++++++++++...-.+...+
T Consensus 203 I~~~~l~~~---------~~~l~~~a~~~L~~~l~~~~~~~~~GN--~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 203 IAGLMLKEQ---------QYRFSAEAEEAFADYIALRRTQPHFAN--ARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHh---------ccccCHHHHHHHHHHHHHhCCCCCCCh--HHHHHHHHHHHHHHHHHHHhcC
Confidence 999998662 245778888877765 44444 9999999999876665554433
No 59
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.7e-19 Score=200.75 Aligned_cols=180 Identities=27% Similarity=0.469 Sum_probs=142.2
Q ss_pred CCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 253 KLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
+.++|=|-++....+++.+. -+++.++|||||||||||.+|+++|-++ ...|+++...
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCH
Confidence 56777777776666665542 1346789999999999999999999998 8899999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC----chhh-HHHHHhhhhc------CCCEEEEE
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN----GAMD-AGNLLKPMLG------RGELRCIG 389 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~----~~~~-~~~~L~~~l~------~g~i~iI~ 389 (973)
++. .+|+|+.|++++++|+.|+.. .|||||+||+|.+.++++.. |.+| +..-|+..|+ ...+.+||
T Consensus 740 ELL--NMYVGqSE~NVR~VFerAR~A-~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 740 ELL--NMYVGQSEENVREVFERARSA-APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHH--HHHhcchHHHHHHHHHHhhcc-CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 888 579999999999999999875 69999999999999876544 3343 2333333333 34799999
Q ss_pred ccCchHHHhhhccCHHHHc--cCce-EEecCC-CHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQQ-VYVDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~~-i~~~~p-~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
|||+++. +||+|.| ||++ +++..+ +.+....+|+.+..++....+|+ +..+++.+.
T Consensus 817 ATNRPDL-----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp 876 (953)
T KOG0736|consen 817 ATNRPDL-----LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCP 876 (953)
T ss_pred cCCCccc-----cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCC
Confidence 9999994 9999999 9995 788888 77888999999999877666664 455566654
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=8.9e-19 Score=204.47 Aligned_cols=203 Identities=21% Similarity=0.220 Sum_probs=158.4
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------- 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 308 (973)
.|.+||||.+|+++|||+..++.+.+.+..+...|. ||+||+||||||+++.|++.+.+......
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 489999999999999999999999998887766665 89999999999999999999965321100
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
.....++++|..+- +| .+.++.+++.+... ++..|+||||+|+|. ...+|.|++.|+. .
T Consensus 85 G~h~DviEIDAas~------rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 85 GRFVDYVEMDAASN------RG--VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------NHAFNAMLKTLEEPPP 148 (830)
T ss_pred CCCceEEEeccccc------cc--HHHHHHHHHHHHhccccCCceEEEEeChhhCC--------HHHHHHHHHHHHhcCC
Confidence 01124566654321 11 22355566655432 345799999999997 4567888888875 4
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+++|++||... .+.+.+++||+.+.|..++.++..+.|+.+++. .++.++++++..+++.+.+.+
T Consensus 149 ~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gsm----- 214 (830)
T PRK07003 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSM----- 214 (830)
T ss_pred CeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 799999999875 578999999999999999999999999888874 688999999999999997554
Q ss_pred chHHHHHHHHHHhh
Q 002068 464 PDKAIDLVDEAAAK 477 (973)
Q Consensus 464 p~~a~~lld~a~~~ 477 (973)
.+++++++.++..
T Consensus 215 -RdALsLLdQAia~ 227 (830)
T PRK07003 215 -RDALSLTDQAIAY 227 (830)
T ss_pred -HHHHHHHHHHHHh
Confidence 3789999988864
No 61
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.80 E-value=2.3e-19 Score=179.34 Aligned_cols=163 Identities=20% Similarity=0.363 Sum_probs=126.5
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~ 730 (973)
++|.+.+++.+.+.++..... + .++||+|++||||+.+|++|++...+.+.||+.+||+.+.+......|||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~------~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS------D-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS------T-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC------C-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 579999999999998875422 1 269999999999999999999999888899999999999887778899998
Q ss_pred CCCc-ccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhcc
Q 002068 731 PPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (973)
Q Consensus 731 ~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~ 809 (973)
..+. .|... .-.+.+..+.+++||||||+.+++.+|..|+++|++|.+....+......++.||+||+.+...+.+
T Consensus 74 ~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~- 150 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE- 150 (168)
T ss_dssp CSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH-
T ss_pred cccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH-
Confidence 7653 33221 2348999999999999999999999999999999999988665555555699999999987655544
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhccChhhhcccce
Q 002068 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE 845 (973)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~ 845 (973)
...|+++|++|+..
T Consensus 151 ----------------------~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 151 ----------------------QGRFREDLYYRLNV 164 (168)
T ss_dssp ----------------------TTSS-HHHHHHHTT
T ss_pred ----------------------cCCChHHHHHHhce
Confidence 45699999999953
No 62
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.79 E-value=1.5e-18 Score=204.94 Aligned_cols=229 Identities=20% Similarity=0.299 Sum_probs=181.9
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++|.+..+..+...+...... ..++++.|++||||+++|++|++.......+|+.+||+.+.+....+.++
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRS-------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhcc-------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhc
Confidence 35788888888888877654321 12699999999999999999999998788999999999997776678899
Q ss_pred CCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 729 GAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 729 G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
|+..| |.|... ...+.+..+.+++||||||+.+++.+|..|++++++|.+....|......++.||+||+.+.....
T Consensus 211 g~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~ 288 (469)
T PRK10923 211 GHEKGAFTGANT--IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRV 288 (469)
T ss_pred CCCCCCCCCCCc--CCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHH
Confidence 98766 334322 123445677789999999999999999999999999988876655555568999999998654433
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
+ ...|+++|++||. ..|.+||+. .+|+..++..++.++...+... ...++++
T Consensus 289 ~-----------------------~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~ 343 (469)
T PRK10923 289 Q-----------------------EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE--AKLLHPE 343 (469)
T ss_pred H-----------------------cCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCC--CCCcCHH
Confidence 3 3468999999995 578889987 5799999999998876543322 2469999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+++.|..+.|++| .|+|+++|++++..
T Consensus 344 a~~~L~~~~wpgN--v~eL~~~i~~~~~~ 370 (469)
T PRK10923 344 TEAALTRLAWPGN--VRQLENTCRWLTVM 370 (469)
T ss_pred HHHHHHhCCCCCh--HHHHHHHHHHHHHh
Confidence 9999999999888 89999999987643
No 63
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5e-19 Score=181.24 Aligned_cols=186 Identities=23% Similarity=0.386 Sum_probs=148.9
Q ss_pred CCCCCCCchHHHHHHHHHh------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 253 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
+.+++-|-+..-+.+-+.+ .|.+...+||+|||||||+.||+++|.+. +..|+++.-+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 5677888887766666642 34556789999999999999999999997 8899999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHH----HHHhhhh----cCCCEEEEEccC
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG----NLLKPML----GRGELRCIGATT 392 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~----~~L~~~l----~~g~i~iI~at~ 392 (973)
+++ ++|.|+.|..++.+|+.++.. .|+||||||||.+.++++...+.... .+|-++- +...+.++||||
T Consensus 201 DLv--SKWmGESEkLVknLFemARe~-kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMAREN-KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHhc-CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 998 468999999999999999874 68999999999999877655433222 2333332 244789999999
Q ss_pred chHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 393 LDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
-+. .+|.+++|||+ +|+|+.|....|..+++-.+.. ....+++..+..+...+.+|.+.
T Consensus 278 iPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 278 IPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred Cch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCCcC
Confidence 875 69999999998 7999999999988887654442 34567899999999999999764
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.79 E-value=1.6e-18 Score=199.81 Aligned_cols=196 Identities=28% Similarity=0.382 Sum_probs=156.2
Q ss_pred cHHHHHhcCCCCCCCCchHHHHH---HHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRR---CIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~---li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
||.+++||.+|+++||++..+.. +...+......+++|+||||||||++|+.+++.+ +.+++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 68999999999999999988666 7777777777899999999999999999999987 6778888754
Q ss_pred cccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHH
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR 397 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~ 397 (973)
.. + ...++.+++.+.. .+.+.||||||+|.+. ...++.|++.++.+.+.+|++||...+
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------~~~q~~LL~~le~~~iilI~att~n~~- 132 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS- 132 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------HHHHHHHHHHhhcCcEEEEEeCCCChh-
Confidence 32 1 1234555555532 2356899999999987 456788999999999999999887664
Q ss_pred hhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCC-ccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHh
Q 002068 398 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (973)
Q Consensus 398 ~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v-~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~ 476 (973)
+.+++++.+||..+.|..++.++...+++..+...+. ++ .++++++..++.++.+. +..++++++.++.
T Consensus 133 --~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd------~R~aln~Le~~~~ 202 (413)
T PRK13342 133 --FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGD------ARRALNLLELAAL 202 (413)
T ss_pred --hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 4688999999999999999999999999887765432 44 88999999999988532 4467788877664
Q ss_pred h
Q 002068 477 K 477 (973)
Q Consensus 477 ~ 477 (973)
.
T Consensus 203 ~ 203 (413)
T PRK13342 203 G 203 (413)
T ss_pred c
Confidence 3
No 65
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.79 E-value=4.8e-18 Score=199.28 Aligned_cols=268 Identities=19% Similarity=0.301 Sum_probs=195.9
Q ss_pred cccccccchhhHHHHHHhhhCCCCccccHHHHHHHHH-HHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEe
Q 002068 606 SMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLH-LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMF 684 (973)
Q Consensus 606 ~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~-l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll 684 (973)
+.+..+++...+...+........ +.. ....+.. +.......++|.+..+..+...+...... . .++++
T Consensus 98 dyl~KP~~~~~L~~~i~~~~~~~~--l~~-~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~a~~----~---~~vli 167 (445)
T TIGR02915 98 DFYQKPIDPDVLKLIVDRAFHLYT--LET-ENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPS----D---ITVLL 167 (445)
T ss_pred EEEeCCCCHHHHHHHHhhhhhhhh--hHH-HHHHhhhhhhcccccceeecCHHHHHHHHHHHHHhCC----C---CCEEE
Confidence 445566777777776665433210 000 1111111 11112246899999999988887754311 1 25899
Q ss_pred ecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCc-ccccccchhhHHHHhCCCeEEEEcccccc
Q 002068 685 MGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKA 763 (973)
Q Consensus 685 ~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l 763 (973)
.|++||||+.+|+.++........+|+.+||+.+.+....+.++|...|. .|.. ....+.+..+.+++||||||+.+
T Consensus 168 ~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l 245 (445)
T TIGR02915 168 LGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDL 245 (445)
T ss_pred ECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCc--cCCCCceeECCCCEEEEechhhC
Confidence 99999999999999999987778899999999997766677889976653 3321 12234566788899999999999
Q ss_pred CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhccc
Q 002068 764 HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRV 843 (973)
Q Consensus 764 ~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~ 843 (973)
++.+|..|+++++++.+....+......++.+|+||+.+...... ...|+++|++|+
T Consensus 246 ~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~~~~~L~~~l 302 (445)
T TIGR02915 246 PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA-----------------------EGTFREDLFYRI 302 (445)
T ss_pred CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH-----------------------cCCccHHHHHHh
Confidence 999999999999999876544444444588999999986544332 356899999999
Q ss_pred ce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 844 DE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 844 d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
.. .|.+||+. .+|+..++..++.++...+... ...+++++++.|..+.|++| .|+|+++|++++.
T Consensus 303 ~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpgN--vreL~~~i~~a~~ 370 (445)
T TIGR02915 303 AEISITIPPLRSRDGDAVLLANAFLERFARELKRK--TKGFTDDALRALEAHAWPGN--VRELENKVKRAVI 370 (445)
T ss_pred ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 64 78999997 5689999999998876654332 35799999999999999877 8999999998664
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.1e-18 Score=201.40 Aligned_cols=204 Identities=22% Similarity=0.232 Sum_probs=159.3
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCC-----Cc---------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDV-----PQ--------- 307 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~-----p~--------- 307 (973)
..|.++|||.+|+++||++..++.+.+.+...+..|. ||+||+||||||+|+.|++.+.+.+. +.
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 3588999999999999999999999999988777775 89999999999999999999965210 00
Q ss_pred -----ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhh
Q 002068 308 -----ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (973)
Q Consensus 308 -----~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (973)
......++++|..+- .| .+.++++++.+.. .++..|+||||+|+|. ...+|.|++.
T Consensus 84 C~~I~aG~hpDviEIdAas~------~g--VDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------~~AaNALLKT 147 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN------RG--VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKT 147 (700)
T ss_pred HHHHHcCCCCcceEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------HHHHHHHHHh
Confidence 001125666665421 11 2335556655543 2446799999999997 4577888888
Q ss_pred hcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 380 LGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 380 l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
||. +++.+|++||... .+.+.++|||+.+.|..++.++..+.|+.++.. .++.++++++..+++.+++-
T Consensus 148 LEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS 218 (700)
T ss_pred hccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 885 6899999999876 577999999999999999999999998888863 57889999999999998643
Q ss_pred cCCCCCchHHHHHHHHHHhh
Q 002068 458 ISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 458 i~~r~~p~~a~~lld~a~~~ 477 (973)
+.+++.+++.++..
T Consensus 219 ------~RdALsLLdQaia~ 232 (700)
T PRK12323 219 ------MRDALSLTDQAIAY 232 (700)
T ss_pred ------HHHHHHHHHHHHHh
Confidence 45788999887753
No 67
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-18 Score=181.83 Aligned_cols=168 Identities=27% Similarity=0.468 Sum_probs=133.7
Q ss_pred hccccccchHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-...|-|.++.++.|.+++.. ...|...|+ .+|||||||||||.||+++|+.. +..|+++..|++
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSEl 221 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSEL 221 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHH
Confidence 357899999999999999843 234655554 69999999999999999999988 789999999988
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
..+ ++|..+..+ +.++..++...+|||||||||.+. .+||..++++|..-.=-|+
T Consensus 222 VqK-----YiGEGaRlV-----RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~---- 287 (406)
T COG1222 222 VQK-----YIGEGARLV-----RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP---- 287 (406)
T ss_pred HHH-----HhccchHHH-----HHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC----
Confidence 554 466544333 577888899999999999999754 5799999999864211121
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
..|+-|||+||. .+.++|+|+ +|||..|.|+.++.+...+|++-+-
T Consensus 288 --~~nvKVI~ATNR------------------------------~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 288 --RGNVKVIMATNR------------------------------PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred --CCCeEEEEecCC------------------------------ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 248889999998 344678887 9999999999999999999998766
Q ss_pred HH
Q 002068 866 DR 867 (973)
Q Consensus 866 ~~ 867 (973)
++
T Consensus 336 rk 337 (406)
T COG1222 336 RK 337 (406)
T ss_pred hh
Confidence 43
No 68
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.78 E-value=4.8e-18 Score=196.22 Aligned_cols=201 Identities=18% Similarity=0.261 Sum_probs=149.7
Q ss_pred CCCCCCCCchHHHHHHHHH---h-------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 252 GKLDPVIGRDDEIRRCIQI---L-------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~---l-------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
.+|+++.|.+...+.+.+. + .-..+.++||+||||||||.+|+++|..+ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 3577888876544333321 1 12456789999999999999999999998 89999999998
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC----chhhHHHHHhhhhc--CCCEEEEEccCchH
Q 002068 322 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLG--RGELRCIGATTLDE 395 (973)
Q Consensus 322 ~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~----~~~~~~~~L~~~l~--~g~i~iI~at~~~~ 395 (973)
+.+ ++.|+.+.+++.+|..+... .||||||||||.++...... ....+.+.|...++ ...+.+|+|||..+
T Consensus 295 l~~--~~vGese~~l~~~f~~A~~~-~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFG--GIVGESESRMRQMIRIAEAL-SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hcc--cccChHHHHHHHHHHHHHhc-CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 875 48899999999999988764 58999999999988643222 12233344444443 45788999999887
Q ss_pred HHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 396 YRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 396 ~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
.+|+++.| ||+ .|+|+.|+.++|.+||+..+.+... ...++..+..+++.+.+|.+ .....++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~GfSG-----AdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSNKFSG-----AEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcCCCCH-----HHHHHHHH
Confidence 69999998 998 6899999999999999988876321 12234557788888887754 35566666
Q ss_pred HHHhhh
Q 002068 473 EAAAKL 478 (973)
Q Consensus 473 ~a~~~~ 478 (973)
+|...+
T Consensus 439 eA~~~A 444 (489)
T CHL00195 439 EAMYIA 444 (489)
T ss_pred HHHHHH
Confidence 666544
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.5e-17 Score=192.64 Aligned_cols=204 Identities=20% Similarity=0.209 Sum_probs=158.8
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCc--------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ-------------- 307 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~-------------- 307 (973)
..|.++|||.+|+++||++..++.+...+.+....|. ||+||+|||||++|+.+|+.+.+...+.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 4689999999999999999999999998877765555 9999999999999999999986532111
Q ss_pred ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 308 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 308 ~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
......++.+|.++- .+ ...++.+++.+... ++..|+||||+|+|. ....|.|+..++.
T Consensus 83 ~g~hpDviEIDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------~~A~NALLKtLEEPP 146 (702)
T PRK14960 83 EGRFIDLIEIDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------THSFNALLKTLEEPP 146 (702)
T ss_pred cCCCCceEEeccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhcCC
Confidence 112235667665432 11 23456666655432 345799999999997 4577888888986
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+.+|++|+... .+.+.+++||..+.|..++.++..+.++.++.+ .++.++++++..++..+.+-
T Consensus 147 ~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~Gd----- 212 (702)
T PRK14960 147 EHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGS----- 212 (702)
T ss_pred CCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 6788999888765 466899999999999999999999999888874 68899999999999998643
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
...++.++|.+++.
T Consensus 213 -LRdALnLLDQaIay 226 (702)
T PRK14960 213 -LRDALSLTDQAIAY 226 (702)
T ss_pred -HHHHHHHHHHHHHh
Confidence 44788899988764
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=5e-18 Score=183.89 Aligned_cols=212 Identities=20% Similarity=0.280 Sum_probs=152.8
Q ss_pred CCCCCCchHHHHHHHHHh------c---------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 254 LDPVIGRDDEIRRCIQIL------S---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l------~---------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+++++|.++..+++-++. . .....|+||+||||||||++|+.+|+.+...+. +....++.++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~~ 81 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEVE 81 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEec
Confidence 456889887555544321 0 123457899999999999999999998854322 2345688888
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchHH
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEY 396 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~~ 396 (973)
++.+.+ .+.|+....++.+|+.+ .++||||||+|.|...+......+..+.|.+.++ ++.+++|++++..+.
T Consensus 82 ~~~l~~--~~~g~~~~~~~~~~~~a----~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 82 RADLVG--EYIGHTAQKTREVIKKA----LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred HHHhhh--hhccchHHHHHHHHHhc----cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 888764 47888888888888765 2469999999999753322223456677777776 457788888887776
Q ss_pred HhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC----CCCCchHHHHHH
Q 002068 397 RKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS----GRFLPDKAIDLV 471 (973)
Q Consensus 397 ~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~----~r~~p~~a~~ll 471 (973)
..++.++|++.+||. .|.|+.++.+++.+|++.++.. .+..++++++..+.+...++.. .......+.+++
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 666788999999996 6999999999999999988874 5678999999988776544321 112234566677
Q ss_pred HHHHhhh
Q 002068 472 DEAAAKL 478 (973)
Q Consensus 472 d~a~~~~ 478 (973)
+.|+.+.
T Consensus 232 e~a~~~~ 238 (261)
T TIGR02881 232 EKAIRRQ 238 (261)
T ss_pred HHHHHHH
Confidence 7766544
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=4e-18 Score=202.88 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=157.6
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCc---c----------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ---A---------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~---~---------- 308 (973)
.+|.++|||.+|+++||++..++.+.+.+..++..|. ||+||||||||++|+.+|+.+.+..... .
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4789999999999999999999999998888777776 8999999999999999999996542110 0
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++.+|..+ ..| ...++.+++.+.. .++..|+||||+|+|. .+++|.|++.|+.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 0111234443321 111 1234555555442 2346799999999997 6688999999985
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+++|++||... .+.+.+++||..+.|..++.++..+.|+.++.. .++.++++++..++.++.+-
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd----- 213 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGS----- 213 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 6799999988876 467999999999999999999999999888874 47899999999999999754
Q ss_pred CchHHHHHHHHHHh
Q 002068 463 LPDKAIDLVDEAAA 476 (973)
Q Consensus 463 ~p~~a~~lld~a~~ 476 (973)
+.+++.+++.+++
T Consensus 214 -~R~ALnLLdQala 226 (944)
T PRK14949 214 -MRDALSLTDQAIA 226 (944)
T ss_pred -HHHHHHHHHHHHH
Confidence 4588999988774
No 72
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=5.5e-18 Score=183.55 Aligned_cols=216 Identities=19% Similarity=0.326 Sum_probs=152.7
Q ss_pred cccccchHHHHHHHHHHHH-------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC----CCcceEEecccc
Q 002068 649 KRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDMSE 717 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~-------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~----~~~~~~~i~~~~ 717 (973)
..++|++.++.+|...+.. ...|...+..+ .+++|+||||||||++|+++|+.++. ...+++.+++++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 3588999999888765432 23445444333 48999999999999999999998742 234667777766
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC--------HHHHHHHHHhhcCCeEecCCCcEEe
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------SDVFNVFLQILDDGRVTDSQGRTVS 789 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~--------~~v~~~Ll~~le~g~~~~~~g~~v~ 789 (973)
+.. . |+|... ..+.+.+..+.++||||||+|.+. .+.++.|++.|+++.
T Consensus 85 l~~-----~-------~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~---------- 141 (261)
T TIGR02881 85 LVG-----E-------YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR---------- 141 (261)
T ss_pred hhh-----h-------hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC----------
Confidence 432 1 223221 345667777888999999999875 468899999998632
Q ss_pred ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHH
Q 002068 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQ 869 (973)
Q Consensus 790 ~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~ 869 (973)
.++++|++++... + +. ...++|+|.+||+..|.|++|+.+++.+|+..++..
T Consensus 142 -~~~~vila~~~~~--~--------------~~---------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-- 193 (261)
T TIGR02881 142 -NEFVLILAGYSDE--M--------------DY---------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-- 193 (261)
T ss_pred -CCEEEEecCCcch--h--------------HH---------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH--
Confidence 3456777765411 0 00 123678999999989999999999999999988743
Q ss_pred HHHHhcCCceecCHHHHHHHHhc----CC--CC-CCCccHHHHHHHHHHHHHHHHHHHcCC
Q 002068 870 KRIADRKMKMQVTDAAIQLLGSL----GY--DP-NYGARPVKRVIQQYVENELAKGILRGE 923 (973)
Q Consensus 870 ~~~~~~~~~l~~~~~a~~~L~~~----~~--~~-~~gaR~L~r~i~~~i~~~la~~~l~~~ 923 (973)
. .+.++++++++|.+. .+ .. ..++|.+++.++.++.+...+.+-.+.
T Consensus 194 -----~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~~ 247 (261)
T TIGR02881 194 -----R--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKSD 247 (261)
T ss_pred -----c--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2 456899999988653 11 22 234899999999988888666665543
No 73
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=4.1e-18 Score=171.66 Aligned_cols=209 Identities=21% Similarity=0.315 Sum_probs=148.5
Q ss_pred HhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 645 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 645 ~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
+...++|+||+++++...-.+......-.......-++||+||||||||++|+++|+.. +.|++.++..++...
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liGe--- 190 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIGE--- 190 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHHH---
Confidence 34468899999999887666654322111111112289999999999999999999998 789999988876433
Q ss_pred hhhcCCCCCccc--ccccchhhHHHHhCCCeEEEEccccccC------------HHHHHHHHHhhcCCeEecCCCcEEec
Q 002068 725 SRLIGAPPGYVG--YEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSF 790 (973)
Q Consensus 725 ~~l~G~~~g~~g--~~~~~~l~~~~~~~~~~Vl~lDEid~l~------------~~v~~~Ll~~le~g~~~~~~g~~v~~ 790 (973)
|+| ......+.+.+++..+||+||||+|.+. .++.|.||+-||.-. .-
T Consensus 191 ---------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~---------en 252 (368)
T COG1223 191 ---------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK---------EN 252 (368)
T ss_pred ---------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc---------cC
Confidence 233 2223456777788889999999999875 358899999998511 11
Q ss_pred cCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 002068 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQK 870 (973)
Q Consensus 791 ~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~ 870 (973)
..++.|++||. ...++|++.+||..-|.|.-++.++...|++.+++.
T Consensus 253 eGVvtIaaTN~------------------------------p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~--- 299 (368)
T COG1223 253 EGVVTIAATNR------------------------------PELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK--- 299 (368)
T ss_pred CceEEEeecCC------------------------------hhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh---
Confidence 34678999997 344788999999999999999999999999998854
Q ss_pred HHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcC
Q 002068 871 RIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 922 (973)
Q Consensus 871 ~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~ 922 (973)
. -+.++-. +++++.. ...++.|.+ .++.+..+|-+++..+
T Consensus 300 ----~--Plpv~~~-~~~~~~~--t~g~SgRdi---kekvlK~aLh~Ai~ed 339 (368)
T COG1223 300 ----F--PLPVDAD-LRYLAAK--TKGMSGRDI---KEKVLKTALHRAIAED 339 (368)
T ss_pred ----C--CCccccC-HHHHHHH--hCCCCchhH---HHHHHHHHHHHHHHhc
Confidence 2 3344444 5666664 334555654 3445556666666664
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.6e-17 Score=194.14 Aligned_cols=204 Identities=21% Similarity=0.197 Sum_probs=159.5
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
..|.++|||.+|+++||++..++.+...+..+...|. ||+||+||||||+|+.+|+.+.+......
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4689999999999999999999999999987777775 89999999999999999999966321100
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++.+|..+- .+ .+.++.+++.+.. .++..|+||||+|.|. .+.+|.|++.+|.
T Consensus 84 ~g~~~D~ieidaas~------~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp 147 (647)
T PRK07994 84 QGRFVDLIEIDAASR------TK--VEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (647)
T ss_pred cCCCCCceeeccccc------CC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCC
Confidence 01123555554321 11 2235566655543 2446799999999997 5678889889986
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+++|++||... .+.+.+++||..+.|..++.++....|+.++.. .++.++++++..++.++.+.
T Consensus 148 ~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs----- 213 (647)
T PRK07994 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGS----- 213 (647)
T ss_pred CCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 6889999988775 678999999999999999999999999888864 47889999999999998754
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
+.+++.++|.+++.
T Consensus 214 -~R~Al~lldqaia~ 227 (647)
T PRK07994 214 -MRDALSLTDQAIAS 227 (647)
T ss_pred -HHHHHHHHHHHHHh
Confidence 45899999987754
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.77 E-value=6.5e-18 Score=203.49 Aligned_cols=198 Identities=23% Similarity=0.313 Sum_probs=154.2
Q ss_pred hcHHHHHhcCCCCCCCCchHHHH---HHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIR---RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~---~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.||.+++||.+|++++|++..+. .+...+......+++|+||||||||++|+++++.+ +.+++.++.
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 37999999999999999998774 45566666777899999999999999999999987 566777765
Q ss_pred ccccccccccchHHHHHHHHHHHHH----HhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchH
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVT----ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 395 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~----~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~ 395 (973)
.. .+. ..++..++.+. ..+.+.||||||+|.+. ...++.|++.++.+.+++|++||.++
T Consensus 86 ~~--~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------~~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 86 VL--AGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFN--------KAQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred hh--hhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC--------HHHHHHHHHHhcCceEEEEEecCCCh
Confidence 32 111 12233333332 22346799999999997 44677888999999999999998877
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhh---hcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYEL---HHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~---~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
+ +.+++++.+|+..+.|++++.+++..+++.++..... ..++.++++++..++..+.+- ...++++|+
T Consensus 149 ~---~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD------~R~lln~Le 219 (725)
T PRK13341 149 Y---FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD------ARSLLNALE 219 (725)
T ss_pred H---hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 5 4678999999999999999999999999988875432 246889999999999988543 236778888
Q ss_pred HHHh
Q 002068 473 EAAA 476 (973)
Q Consensus 473 ~a~~ 476 (973)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 7764
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=1.2e-16 Score=193.56 Aligned_cols=199 Identities=20% Similarity=0.287 Sum_probs=138.5
Q ss_pred CCCCchHHHHHHHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc--
Q 002068 256 PVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-- 324 (973)
.++||++.++.+.+.+.+ ++..++||+||||||||.+|+.+|+.+ +.+++.+|++.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 489999999999988753 223468999999999999999999998 67899999887632
Q ss_pred ------c--ccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 325 ------G--AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 325 ------g--~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
| ..|.|... ...+.++....+.+||||||+|.+. .++++.|+++++.|
T Consensus 529 ~~~~LiG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1 11333211 1123333334467899999999997 67899999999865
Q ss_pred CEEEEEccCchH----------------------HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh---
Q 002068 384 ELRCIGATTLDE----------------------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH--- 437 (973)
Q Consensus 384 ~i~iI~at~~~~----------------------~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~--- 437 (973)
++++|+|||... ..+ .+.|+|.+|++ .|.|.+.+.++..+|+...+..+...
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~--~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~ 675 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK--IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQ 675 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHH--hcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445899988321 111 35699999998 67888889999999997766544322
Q ss_pred --cCCccCHHHHHHHHHhcc-cccCCCCCchHHHHHHHHHHhh
Q 002068 438 --HGVRISDSALVEAAILSD-RYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 438 --~~v~i~~~~l~~l~~~s~-~~i~~r~~p~~a~~lld~a~~~ 477 (973)
..+.+++++++++++... .-++.|.+.....+.+....+.
T Consensus 676 ~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 676 KGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 356789999999986542 2234555544444444444443
No 77
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.76 E-value=8.7e-18 Score=181.04 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=123.2
Q ss_pred cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH----hCC
Q 002068 273 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE----SEG 348 (973)
Q Consensus 273 ~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~----~~~ 348 (973)
-+.+..++|+||||||||.+|+++|+.+ +..++.++.+++.+ +|.|+.+..++.+|..+.. ...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~s--k~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELES--ENAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhc--CcCCcHHHHHHHHHHHHHHHhhccCC
Confidence 3566678999999999999999999999 99999999999984 5999999999999999875 346
Q ss_pred CeEEEEccccccccCCCCCc-h--hhH-HHHHhhhhc----------------CCCEEEEEccCchHHHhhhccCHHHHc
Q 002068 349 QIILFIDEIHTVVGAGATNG-A--MDA-GNLLKPMLG----------------RGELRCIGATTLDEYRKYIEKDPALER 408 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~-~--~~~-~~~L~~~l~----------------~g~i~iI~at~~~~~~~~~~~d~al~~ 408 (973)
+|||||||||.+.+...+.. . ... ...|...++ .+++.||+|||.++ .+||+|+|
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALlR 287 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLIR 287 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHcC
Confidence 99999999999997664321 1 112 123333322 45789999999998 69999999
Q ss_pred --cCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHh
Q 002068 409 --RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAIL 453 (973)
Q Consensus 409 --Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~ 453 (973)
||+.. +..|+.++|.+||+.+.++ ..++...+..+++-
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDT 327 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHc
Confidence 99864 4689999999999988874 34556555555443
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=99.76 E-value=1e-17 Score=186.90 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=148.5
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 323 (973)
+|.++|||.+|++++|+++.+..+...+.....+|+||+||||||||++|+++|+.+.+... ...+++++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 68999999999999999999998888887777789999999999999999999999854321 2346666655432
Q ss_pred ccccccchHHHHHHHHHHHHHH------hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchH
Q 002068 324 AGAKYRGEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE 395 (973)
Q Consensus 324 ~g~~~~g~~e~~l~~~~~~~~~------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~ 395 (973)
+ .. .++..+..... .+...|++|||+|.+. .+.++.|+..++. ...++|.+||...
T Consensus 77 ~----~~----~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt--------~~aq~aL~~~lE~~~~~t~~il~~n~~~ 140 (319)
T PLN03025 77 G----ID----VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT--------SGAQQALRRTMEIYSNTTRFALACNTSS 140 (319)
T ss_pred c----HH----HHHHHHHHHHhccccCCCCCeEEEEEechhhcC--------HHHHHHHHHHHhcccCCceEEEEeCCcc
Confidence 1 11 23333332221 1235699999999997 4567888888874 4567788887654
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHH
Q 002068 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDE 473 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~ 473 (973)
.+.+++++||..+.|..|+.++....++.++++ .++.++++++.+++..+.+-+ ..++..++.
T Consensus 141 -----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl------R~aln~Lq~ 203 (319)
T PLN03025 141 -----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM------RQALNNLQA 203 (319)
T ss_pred -----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHH
Confidence 567999999999999999999999999888874 688999999999999887432 367777763
No 79
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.75 E-value=2.7e-17 Score=187.46 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=149.7
Q ss_pred CCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.++++.|.++.++.+.+.+. -..+.++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeeh
Confidence 56678999988888777541 1456789999999999999999999998 778999998
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhh---c----CCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML---G----RGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l---~----~g~i~iI~ 389 (973)
+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+... +..+.+..+..++ + .+++++|+
T Consensus 199 ~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~ 275 (389)
T PRK03992 199 SELV--QKFIGEGARLVRELFELARE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIA 275 (389)
T ss_pred HHHh--HhhccchHHHHHHHHHHHHh-cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEE
Confidence 8876 34788888889999988875 357899999999998654332 2234444444443 2 45899999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|||..+ .+|+++.| ||+ .|.|+.|+.+++.+||+.....+....+ ..+..++..+.+| .+..
T Consensus 276 aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-----~~~~~la~~t~g~-----sgad 340 (389)
T PRK03992 276 ATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-----VDLEELAELTEGA-----SGAD 340 (389)
T ss_pred ecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-----CCHHHHHHHcCCC-----CHHH
Confidence 999987 58999998 997 6999999999999999977764322111 2356677777655 3446
Q ss_pred HHHHHHHHHhhh
Q 002068 467 AIDLVDEAAAKL 478 (973)
Q Consensus 467 a~~lld~a~~~~ 478 (973)
...++.+|+..+
T Consensus 341 l~~l~~eA~~~a 352 (389)
T PRK03992 341 LKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHH
Confidence 677777777654
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2e-17 Score=189.83 Aligned_cols=204 Identities=19% Similarity=0.210 Sum_probs=160.1
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCC-CceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------- 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~-~~LL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 308 (973)
+|..+|||.+|+++|||+..++.+.+.+..+..+ ++||+||+||||||+|+.+|+.+.+...|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 4789999999999999999999888887665554 6899999999999999999999865433321
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
..+..++++|.++-. | .+.++.+++.+... +...|++|||+|.|. ...+|.|+..++. .
T Consensus 82 ~~~~Dv~eidaas~~------~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASNT------S--VDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------NSAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccCC------C--HHHHHHHHHHHHhccccCCceEEEEeChHhCC--------HHHHHHHHHHHhCCCC
Confidence 234567888765322 1 23466666666432 345699999999997 4577888888885 5
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+.+|++||... .+.+.+++||+.+.|..++.++....++.++.+ .++.++++++..+++.+.+-
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gs------ 210 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGS------ 210 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 788999887665 466899999999999999999999998888874 68899999999999998643
Q ss_pred chHHHHHHHHHHhhh
Q 002068 464 PDKAIDLVDEAAAKL 478 (973)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (973)
...+..+++.++...
T Consensus 211 lR~alslLdqli~y~ 225 (491)
T PRK14964 211 MRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 346888898887653
No 81
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.75 E-value=5.5e-17 Score=191.17 Aligned_cols=228 Identities=20% Similarity=0.321 Sum_probs=178.8
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++|.+..+..+...+....... .++++.|++||||+++|++++......+.+|+.+||..+.+....+.++
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~-------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lf 215 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQ-------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELF 215 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCC-------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhc
Confidence 458999999988888776654321 2699999999999999999999887778999999999998777778899
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 729 GAPPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 729 G~~~g~-~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
|+..+. .|... .-.+.+..+.+++||||||+.+++.+|..|+++++++.+....+......++.||+|||.+...+.
T Consensus 216 g~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~ 293 (457)
T PRK11361 216 GHEKGAFTGAQT--LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMV 293 (457)
T ss_pred CCCCCCCCCCCC--CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHH
Confidence 976542 22211 123456677889999999999999999999999999877654443334457899999998655443
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
+ ...|++++++|+.. .|.+||+. .+|+..++..++.++..+.... .+.++++
T Consensus 294 ~-----------------------~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~--~~~~~~~ 348 (457)
T PRK11361 294 K-----------------------EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD--IIDIDPM 348 (457)
T ss_pred H-----------------------cCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHH
Confidence 3 34588899999954 68888987 5789999999988876543221 3579999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
+++.|..+.|++| +|+|+++|++.+.
T Consensus 349 a~~~L~~~~wpgN--v~eL~~~~~~~~~ 374 (457)
T PRK11361 349 AMSLLTAWSWPGN--IRELSNVIERAVV 374 (457)
T ss_pred HHHHHHcCCCCCc--HHHHHHHHHHHHH
Confidence 9999999999887 8999999998663
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.7e-17 Score=193.81 Aligned_cols=204 Identities=21% Similarity=0.180 Sum_probs=158.5
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
..|.++|||.+|+++||++..++.+.+.+.....+| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 358999999999999999999999999998777777 589999999999999999999965332211
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|.++- .| .+.++.+++.+... +...|+||||+|.|. .+.+|.|+..++.
T Consensus 84 ~g~~~d~~eidaas~------~~--v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------~~a~naLLk~LEepp 147 (509)
T PRK14958 84 EGRFPDLFEVDAASR------TK--VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------GHSFNALLKTLEEPP 147 (509)
T ss_pred cCCCceEEEEccccc------CC--HHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------HHHHHHHHHHHhccC
Confidence 11224677765421 11 22355666655432 345699999999998 4577888888885
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
..+.+|++||... .+.+.+++||..+.|..++.++....++.++++ .++.++++++..++..+.+
T Consensus 148 ~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~G------ 212 (509)
T PRK14958 148 SHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANG------ 212 (509)
T ss_pred CCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4788999988764 466889999999999999999988888888874 5788999999999999863
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
-+..++.+++.+++.
T Consensus 213 slR~al~lLdq~ia~ 227 (509)
T PRK14958 213 SVRDALSLLDQSIAY 227 (509)
T ss_pred cHHHHHHHHHHHHhc
Confidence 355889999988765
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.9e-17 Score=189.80 Aligned_cols=202 Identities=22% Similarity=0.251 Sum_probs=149.9
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCc--------------c
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ--------------A 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~--------------~ 308 (973)
.|.++|||.+|+++|||+..++.+...+..+..+| +||+|||||||||+|+.+|+.+.+...+. .
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 47889999999999999999888888877766655 69999999999999999999985432110 0
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
.....++.++.+. ..| ...++.+.+.+.. .+...|+||||+|.+. .+.++.|+..++. +
T Consensus 83 g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 83 GTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (472)
T ss_pred CCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HHHHHHHHHHHHhCCC
Confidence 0122456665432 122 1234455544432 2345699999999996 3466778888875 6
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+++|++||... .+++++.+||+.+.|.+++.++...+++..+.. .++.++++++..++..+.+-+
T Consensus 147 ~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~Gdl----- 212 (472)
T PRK14962 147 HVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGL----- 212 (472)
T ss_pred cEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCH-----
Confidence 888888888644 578999999999999999999998888887763 588999999999999876322
Q ss_pred chHHHHHHHHHHh
Q 002068 464 PDKAIDLVDEAAA 476 (973)
Q Consensus 464 p~~a~~lld~a~~ 476 (973)
..++..++.++.
T Consensus 213 -R~aln~Le~l~~ 224 (472)
T PRK14962 213 -RDALTMLEQVWK 224 (472)
T ss_pred -HHHHHHHHHHHH
Confidence 257777776554
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=7.5e-17 Score=175.63 Aligned_cols=189 Identities=20% Similarity=0.272 Sum_probs=136.6
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEc
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiD 355 (973)
..|+||+||||||||++|+++|+.+..... +...+++.++.+.+.+ .+.|+.+.+...+++.+ .++|||||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~~l~~--~~~g~~~~~~~~~l~~a----~ggVLfID 129 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRDDLVG--QYIGHTAPKTKEVLKKA----MGGVLFID 129 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHHHHHH--HHhccchHHHHHHHHHc----cCCEEEEE
Confidence 346899999999999999999998754321 1245688888777764 36777776666676654 34699999
Q ss_pred cccccccCCCC-CchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHH
Q 002068 356 EIHTVVGAGAT-NGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLR 431 (973)
Q Consensus 356 Ei~~l~~~~~~-~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~ 431 (973)
|+|.+...+.. ....++++.|...++. +++++|++++......++..+|+|.+||. .|.|++++.+++.+|++.++
T Consensus 130 E~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 130 EAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 99999643322 2345677888888863 57899999998877777888999999998 79999999999999999988
Q ss_pred HHHhhhcCCccCHHHHHHHHHhcccccCCCCCc--hHHHHHHHHHHhh
Q 002068 432 ERYELHHGVRISDSALVEAAILSDRYISGRFLP--DKAIDLVDEAAAK 477 (973)
Q Consensus 432 ~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p--~~a~~lld~a~~~ 477 (973)
.+ .+..+++++...+..+..+......++ .....+++.+..+
T Consensus 210 ~~----~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 210 EE----QQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HH----hcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 85 356678887776666543322112122 2444555555543
No 85
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.75 E-value=3.2e-17 Score=193.42 Aligned_cols=227 Identities=21% Similarity=0.345 Sum_probs=180.3
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcC
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 729 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G 729 (973)
.++|.+..+..+...+..... .+. ++++.|++||||+++|++++....+...+|+.+||+.+.+....+.++|
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~------~~~-~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR------SDI-TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC------cCC-eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 478888888888877765321 112 6999999999999999999999887789999999999977666778899
Q ss_pred CCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 730 APPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 730 ~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
+..+ +.|... ...+.+..+.+++||||||+.+++.+|..|++++++|.+....|......++.||+||+.+.+.+..
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 285 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR 285 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH
Confidence 7655 333221 2234566777899999999999999999999999999887655555445578899999986544433
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHH
Q 002068 809 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAA 885 (973)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a 885 (973)
...|+++|++|+.. .|.+|||. .+|+..++..++.++...+... ...+++++
T Consensus 286 -----------------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a 340 (463)
T TIGR01818 286 -----------------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVE--PKLLDPEA 340 (463)
T ss_pred -----------------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCC--CCCcCHHH
Confidence 34688999999975 89999998 7899999999998876544322 24699999
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 886 IQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 886 ~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++.|..+.|++| .|+|++++++++.
T Consensus 341 ~~~L~~~~wpgN--vreL~~~~~~~~~ 365 (463)
T TIGR01818 341 LERLKQLRWPGN--VRQLENLCRWLTV 365 (463)
T ss_pred HHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 999999999888 8999999998664
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.2e-17 Score=189.90 Aligned_cols=205 Identities=20% Similarity=0.207 Sum_probs=156.5
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.+|.++|||.+|+++||++..++.+...+..+...| +||+||+|||||++|+.+|+.+.+......
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999887766656 689999999999999999999865221100
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|.... .| ...++.+++.+.. .++..|+||||+|.+. .+.+|.|+..+++
T Consensus 84 ~~~~~dlieidaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp 147 (546)
T PRK14957 84 NNSFIDLIEIDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPP 147 (546)
T ss_pred cCCCCceEEeecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCC
Confidence 01224555654221 11 1234455555442 2456799999999997 4578889999986
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+.+|++||... .+.+.+++||..+.|..++.++....++.++.+ .++.++++++..++..+.+-
T Consensus 148 ~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gd----- 213 (546)
T PRK14957 148 EYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGS----- 213 (546)
T ss_pred CCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 5788898887643 466789999999999999999998888888775 57899999999999999643
Q ss_pred CchHHHHHHHHHHhhh
Q 002068 463 LPDKAIDLVDEAAAKL 478 (973)
Q Consensus 463 ~p~~a~~lld~a~~~~ 478 (973)
..+++.+++.+++..
T Consensus 214 -lR~alnlLek~i~~~ 228 (546)
T PRK14957 214 -LRDALSLLDQAISFC 228 (546)
T ss_pred -HHHHHHHHHHHHHhc
Confidence 447889999888653
No 87
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.74 E-value=8.9e-16 Score=191.39 Aligned_cols=182 Identities=21% Similarity=0.303 Sum_probs=126.5
Q ss_pred CCCCCchHHHHHHHHHhccC---------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc
Q 002068 255 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 325 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~---------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g 325 (973)
..++||+..++.+...+.+. +..++||+||||||||++|++||+.+... +.+++.+|++.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 35999999999999987542 12357899999999999999999998432 457899998776321
Q ss_pred c----------cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------------
Q 002068 326 A----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (973)
Q Consensus 326 ~----------~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------ 383 (973)
. .|.|..+. ..+.+.....+.+|||||||+.+. .++++.|.++++.|
T Consensus 638 ~~~~~l~g~~~g~~g~~~~---g~l~~~v~~~p~~vlllDeieka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEG---GQLTEAVRRKPYSVVLFDEVEKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCcccc---cHHHHHHHcCCCcEEEEeccccCC--------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 1 12222111 112222223456799999999886 67899999999765
Q ss_pred -CEEEEEccCchHH--Hh------------------hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh---hc
Q 002068 384 -ELRCIGATTLDEY--RK------------------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---HH 438 (973)
Q Consensus 384 -~i~iI~at~~~~~--~~------------------~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~---~~ 438 (973)
+.++|+|||...- .. .-...|.|..||+ .+.|.+++.++..+|+...+..+.. ..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3448999886210 00 0124588999998 5677777999999998776654332 12
Q ss_pred --CCccCHHHHHHHHHhc
Q 002068 439 --GVRISDSALVEAAILS 454 (973)
Q Consensus 439 --~v~i~~~~l~~l~~~s 454 (973)
.+.++++++..+++..
T Consensus 787 ~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 787 KITLELSDAALDFLAEAG 804 (852)
T ss_pred CCeecCCHHHHHHHHHhC
Confidence 3678999999998763
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.5e-16 Score=187.46 Aligned_cols=203 Identities=21% Similarity=0.206 Sum_probs=156.2
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCc---------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ--------------- 307 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~--------------- 307 (973)
.|.++|||.+|+++||++..++.+.+.+......|. ||+||+|||||++|+.+|+.+.+.....
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 589999999999999999999999999887777676 8999999999999999999997532100
Q ss_pred ----ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhh
Q 002068 308 ----ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML 380 (973)
Q Consensus 308 ----~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l 380 (973)
......++++|..+- .| .+.++++++.+... ++..|++|||+|.|. .+.+|.|+..+
T Consensus 85 ~~i~~g~h~D~~eldaas~------~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------~~a~NaLLKtL 148 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASN------RG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------NTAFNAMLKTL 148 (618)
T ss_pred HHHHcCCCCceeecCcccc------cC--HHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------HHHHHHHHHhc
Confidence 001224555553321 11 23456666665432 335699999999998 45678888888
Q ss_pred cC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccccc
Q 002068 381 GR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (973)
Q Consensus 381 ~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i 458 (973)
+. +.+.+|++||... .+.+.+++||..+.|..++.++..+.|+.++.+ .++.++++++..++..+.+-
T Consensus 149 EEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gs- 218 (618)
T PRK14951 149 EEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGS- 218 (618)
T ss_pred ccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 85 5788898888765 466889999999999999999999888887764 68899999999999988643
Q ss_pred CCCCCchHHHHHHHHHHhh
Q 002068 459 SGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 459 ~~r~~p~~a~~lld~a~~~ 477 (973)
..+++.++|.++..
T Consensus 219 -----lR~al~lLdq~ia~ 232 (618)
T PRK14951 219 -----MRDALSLTDQAIAF 232 (618)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 45788888887765
No 89
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.74 E-value=3.7e-17 Score=185.14 Aligned_cols=198 Identities=20% Similarity=0.313 Sum_probs=146.1
Q ss_pred CCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+++++.|.+..++.+.+.+. -..+.++||+||||||||++|+++|..+ +.+++.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~ 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVG 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 67788998876666655431 1346789999999999999999999987 778898887
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhh---c----CCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML---G----RGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l---~----~g~i~iI~ 389 (973)
+.+. .+|.|+.+..++.+|..+.. ..|+||||||+|.+...+... ........+..++ + ..++.+|+
T Consensus 213 s~l~--~k~~ge~~~~lr~lf~~A~~-~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~ 289 (398)
T PTZ00454 213 SEFV--QKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 289 (398)
T ss_pred HHHH--HHhcchhHHHHHHHHHHHHh-cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 7765 35788888899999998875 468999999999998654221 2233334443333 2 35789999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
+||..+ .+||++.| ||+ .|.|+.|+.+++..||+.+..++....+ -.+..++..+.+| .+..
T Consensus 290 aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-----vd~~~la~~t~g~-----sgaD 354 (398)
T PTZ00454 290 ATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-----VDLEDFVSRPEKI-----SAAD 354 (398)
T ss_pred ecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----cCHHHHHHHcCCC-----CHHH
Confidence 999987 69999998 998 6999999999999999988875432222 2345666666655 3456
Q ss_pred HHHHHHHHHhhh
Q 002068 467 AIDLVDEAAAKL 478 (973)
Q Consensus 467 a~~lld~a~~~~ 478 (973)
...++.+|+..+
T Consensus 355 I~~l~~eA~~~A 366 (398)
T PTZ00454 355 IAAICQEAGMQA 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 667777776544
No 90
>PRK15115 response regulator GlrR; Provisional
Probab=99.74 E-value=3.7e-17 Score=191.80 Aligned_cols=227 Identities=19% Similarity=0.244 Sum_probs=173.6
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcC
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 729 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G 729 (973)
.++|.+..+..+.+.+..... . .+ ++++.|++||||+++|+.+++.....+.+|+.+||..+.+....+.++|
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~--~---~~--~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ--S---DV--SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc--C---CC--eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 467777777776666554321 1 11 5999999999999999999999877788999999999977766778888
Q ss_pred CCCCcc-cccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 730 APPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 730 ~~~g~~-g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
+..|.. |... ...+.+..+.+++||||||+.+++..|..|++++++|.+....+......++.+|+||+.+......
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~ 285 (444)
T PRK15115 208 HARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA 285 (444)
T ss_pred CCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH
Confidence 876532 2211 1234556777899999999999999999999999999876444443334588999999975433322
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHH
Q 002068 809 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAA 885 (973)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a 885 (973)
...|+++|++|++. .|.+|||. .+|+..++..++.++....... ...+++++
T Consensus 286 -----------------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~--~~~~~~~a 340 (444)
T PRK15115 286 -----------------------RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF--VRAFSTDA 340 (444)
T ss_pred -----------------------cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCC--CCCcCHHH
Confidence 34699999999964 78889987 4689999999998876543322 24699999
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 886 IQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 886 ~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++.|..+.|++| .|+|+++|++++.
T Consensus 341 ~~~L~~~~WpgN--vreL~~~i~~~~~ 365 (444)
T PRK15115 341 MKRLMTASWPGN--VRQLVNVIEQCVA 365 (444)
T ss_pred HHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 999999999887 8999999998654
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=3.8e-16 Score=190.42 Aligned_cols=203 Identities=19% Similarity=0.162 Sum_probs=155.3
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCccc-------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------------- 309 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 309 (973)
.|.++|||.+|++|||++..++.+...+...+.+| +||+||+|||||++|+.||+.|.+...+...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47899999999999999999999999988877777 5899999999999999999999753321110
Q ss_pred ---CCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-
Q 002068 310 ---MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (973)
Q Consensus 310 ---~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (973)
.+..++.+|..+.. | ...++.+.+.+.. .+...|+||||+|.|. .+.+|.|+.+|++
T Consensus 84 g~~~~~dv~eidaas~~------~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEp 147 (824)
T PRK07764 84 GGPGSLDVTEIDAASHG------G--VDDARELRERAFFAPAESRYKIFIIDEAHMVT--------PQGFNALLKIVEEP 147 (824)
T ss_pred CCCCCCcEEEecccccC------C--HHHHHHHHHHHHhchhcCCceEEEEechhhcC--------HHHHHHHHHHHhCC
Confidence 12345555543211 1 2234444444332 2446699999999998 5678899999985
Q ss_pred -CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCC
Q 002068 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (973)
Q Consensus 383 -g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r 461 (973)
..++||++|+..+ .+-+.+++||+.+.|..++.++..++|+.+++. .++.++++++..++..+.+-
T Consensus 148 P~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGd---- 214 (824)
T PRK07764 148 PEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGS---- 214 (824)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 6889999887765 366899999999999999999999888887764 57889999999999998643
Q ss_pred CCchHHHHHHHHHHhh
Q 002068 462 FLPDKAIDLVDEAAAK 477 (973)
Q Consensus 462 ~~p~~a~~lld~a~~~ 477 (973)
...++.+||..++.
T Consensus 215 --lR~Al~eLEKLia~ 228 (824)
T PRK07764 215 --VRDSLSVLDQLLAG 228 (824)
T ss_pred --HHHHHHHHHHHHhh
Confidence 34778888887754
No 92
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=8e-17 Score=189.35 Aligned_cols=202 Identities=20% Similarity=0.212 Sum_probs=156.9
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc---------------
Q 002068 245 LTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------- 308 (973)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~--------------- 308 (973)
|.++|||.+|+++|||+..++.+...+.....+| +||+||+||||||+|+.+|+.+.+...+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 5689999999999999999999999998888788 489999999999999999999875322110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|.++. .| ...++.+.+.+.. .+...|++|||+|.|. ..++|.|+..++.
T Consensus 83 ~~~~~dvieidaas~------~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------~~A~NALLK~LEEpp 146 (584)
T PRK14952 83 GPGSIDVVELDAASH------GG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------TAGFNALLKIVEEPP 146 (584)
T ss_pred cCCCceEEEeccccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------HHHHHHHHHHHhcCC
Confidence 01234666654321 11 2234455444432 2345699999999997 4578889999985
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+++|++||... .+.+++++||+.+.|..++.++..+.+..++++ .++.++++++..++..+.+
T Consensus 147 ~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~G------ 211 (584)
T PRK14952 147 EHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGG------ 211 (584)
T ss_pred CCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 6899999988775 577999999999999999999999888888874 5788999999999998863
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
-+..++.+||..++.
T Consensus 212 dlR~aln~Ldql~~~ 226 (584)
T PRK14952 212 SPRDTLSVLDQLLAG 226 (584)
T ss_pred CHHHHHHHHHHHHhc
Confidence 345788999987764
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=3.4e-17 Score=168.20 Aligned_cols=191 Identities=26% Similarity=0.312 Sum_probs=142.0
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHhcc-----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 245 LTAMASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~li~~l~~-----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.....||..|+++|||++..+++--.++. ...-|+||+||||.||||||..+|.++ +..+.....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsG 85 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSG 85 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEeccc
Confidence 34456899999999998866665544432 234689999999999999999999999 655554433
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC----------------
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------- 383 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------- 383 (973)
..+.- .| .+-.++..+. .+-||||||||++. ..+..+|-++|+.-
T Consensus 86 p~leK----~g----DlaaiLt~Le---~~DVLFIDEIHrl~--------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 86 PALEK----PG----DLAAILTNLE---EGDVLFIDEIHRLS--------PAVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred ccccC----hh----hHHHHHhcCC---cCCeEEEehhhhcC--------hhHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 33221 12 2444444443 34599999999998 44677888888632
Q ss_pred ----CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccccc
Q 002068 384 ----ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (973)
Q Consensus 384 ----~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i 458 (973)
.+.+|||||... .+..+|+.||- ...+..++.+|..+|+..-.. ..++.+++++...+++.|
T Consensus 147 ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----~l~i~i~~~~a~eIA~rS---- 213 (332)
T COG2255 147 LDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----ILGIEIDEEAALEIARRS---- 213 (332)
T ss_pred ccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----HhCCCCChHHHHHHHHhc----
Confidence 678999999998 48899999997 569999999998888866554 468899999999998887
Q ss_pred CCCCCchHHHHHHHHHHhhhh
Q 002068 459 SGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 459 ~~r~~p~~a~~lld~a~~~~~ 479 (973)
|..|.-|.+++...--.+.
T Consensus 214 --RGTPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 214 --RGTPRIANRLLRRVRDFAQ 232 (332)
T ss_pred --cCCcHHHHHHHHHHHHHHH
Confidence 4678888888766544443
No 94
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.3e-16 Score=180.76 Aligned_cols=204 Identities=21% Similarity=0.200 Sum_probs=152.7
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCccc------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQAL------------ 309 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~l------------ 309 (973)
.+|.++|||.+|+++|||+..++.+...+..+..+|. ||+||||||||++|+.+|+.+.+...+...
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4689999999999999999999999998877666665 899999999999999999998542211100
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 310 --~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
....++.++.+.- .....++.+++.+... +...|+||||+|.+. ...++.|+..++.
T Consensus 84 ~~~~~d~~~~~~~~~--------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAASR--------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEeccccc--------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0123444443210 1122355666554422 234699999999997 3466777777774
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+.+|++|+... .+.+++++||..+.|.+|+.++..++++.++++ .++.++++++..++..+.+
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G------ 212 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHG------ 212 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5778888887654 477899999999999999999999999888774 5788999999999998863
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
.+..++++++.++..
T Consensus 213 ~~R~al~~l~~~~~~ 227 (363)
T PRK14961 213 SMRDALNLLEHAINL 227 (363)
T ss_pred CHHHHHHHHHHHHHh
Confidence 355788999888754
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=1e-16 Score=164.64 Aligned_cols=182 Identities=15% Similarity=0.257 Sum_probs=138.3
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~ 725 (973)
..+.+++||+.+++.+.-.++.++.. +..+.|+||+||||.|||+||..||+++ +.++......-+..+
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~---- 91 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKP---- 91 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccCh----
Confidence 34578999999999999999877643 3445699999999999999999999999 444444333333211
Q ss_pred hhcCCCCCcccccccchhhHHHH-hCCCeEEEEccccccCHHHHHHHHHhhcCCeEec--CC-----CcEEeccCEEEEE
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD--SQ-----GRTVSFTNTVIIM 797 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~--~~-----g~~v~~~~~iiI~ 797 (973)
+.+...+. -.++.|||||||+.+++.+-+.|+.+||+-++.. +. ..+++.+.+.+|.
T Consensus 92 ---------------gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 92 ---------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ---------------hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 23444444 3567799999999999999999999999876543 22 2356677777776
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM 877 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~ 877 (973)
+|.. ...++.+|.+||..+..+..|+.+|+.+|+.+.-. -.
T Consensus 157 ATTr------------------------------~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~---------~l 197 (332)
T COG2255 157 ATTR------------------------------AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK---------IL 197 (332)
T ss_pred eccc------------------------------cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH---------Hh
Confidence 6654 22356679999999999999999999999987552 23
Q ss_pred ceecCHHHHHHHHhc
Q 002068 878 KMQVTDAAIQLLGSL 892 (973)
Q Consensus 878 ~l~~~~~a~~~L~~~ 892 (973)
.+++++++...|++.
T Consensus 198 ~i~i~~~~a~eIA~r 212 (332)
T COG2255 198 GIEIDEEAALEIARR 212 (332)
T ss_pred CCCCChHHHHHHHHh
Confidence 578999999999986
No 96
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-16 Score=189.66 Aligned_cols=182 Identities=27% Similarity=0.396 Sum_probs=143.3
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEE
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILf 353 (973)
+.+..+||+||||||||++|+++|..+ +.+|+.++.+++. ++|.|+.++.++.+|..++.. .++|||
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~--sk~vGesek~ir~~F~~A~~~-~p~iiF 340 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELL--SKWVGESEKNIRELFEKARKL-APSIIF 340 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHh--ccccchHHHHHHHHHHHHHcC-CCcEEE
Confidence 445578999999999999999999987 8999999999777 469999999999999999854 589999
Q ss_pred EccccccccCCCCCch---hhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHH
Q 002068 354 IDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 423 (973)
Q Consensus 354 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~ 423 (973)
|||+|.+.+.+..... ..+.+.|+..++ ..++.+|+|||.++ .+|+++.| ||+ .|+|+.|+.+++
T Consensus 341 iDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred EEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc-----ccCHhhcccCccceEeecCCCCHHHH
Confidence 9999999987765422 245555555553 44788999999998 69999999 998 689999999999
Q ss_pred HHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhh
Q 002068 424 ISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 424 ~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
.+|++..+...... ...+-.+..+++.+.+ +...+...++.+|+......
T Consensus 416 ~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~-----~sgadi~~i~~ea~~~~~~~ 465 (494)
T COG0464 416 LEIFKIHLRDKKPP---LAEDVDLEELAEITEG-----YSGADIAALVREAALEALRE 465 (494)
T ss_pred HHHHHHHhcccCCc---chhhhhHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHH
Confidence 99998877732211 1235556677776665 44556777777777665443
No 97
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.73 E-value=8.9e-17 Score=189.70 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=149.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc-------CCCcceEEecccc--c
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-------NTEEALVRIDMSE--Y 718 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~-------~~~~~~~~i~~~~--~ 718 (973)
+++++||+++++.+..++. + ..+. ++||+||||||||++|+++++.+. ..+.+|+.+||.. +
T Consensus 64 f~~iiGqs~~i~~l~~al~----~----~~~~-~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~ 134 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALC----G----PNPQ-HVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARF 134 (531)
T ss_pred HHHeeCcHHHHHHHHHHHh----C----CCCc-eEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccC
Confidence 5579999999998876532 1 1222 799999999999999999998642 2246899999974 2
Q ss_pred cchhhhhhhcCCC--CCccccccc------chhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC------
Q 002068 719 MEKHAVSRLIGAP--PGYVGYEEG------GQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ------ 784 (973)
Q Consensus 719 ~~~~~~~~l~G~~--~g~~g~~~~------~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~------ 784 (973)
.+......++|.. +.|.+.... ....+.+.++.++|||||||+.+++..|+.|+++|+++++....
T Consensus 135 ~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~ 214 (531)
T TIGR02902 135 DERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214 (531)
T ss_pred CccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccccc
Confidence 2222223455542 222221100 12245677888999999999999999999999999998654321
Q ss_pred CcE-----------EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC
Q 002068 785 GRT-----------VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (973)
Q Consensus 785 g~~-----------v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~ 853 (973)
+.. -...++.+|++|+..+ ..++|++.+|| ..|.|+||+
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p-----------------------------~~L~paLrsR~-~~I~f~pL~ 264 (531)
T TIGR02902 215 NPNIPSHIHDIFQNGLPADFRLIGATTRNP-----------------------------EEIPPALRSRC-VEIFFRPLL 264 (531)
T ss_pred CcccccchhhhcccCcccceEEEEEecCCc-----------------------------ccCChHHhhhh-heeeCCCCC
Confidence 100 0113566776666522 23678999999 578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 854 RDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 854 ~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
.+++.+|++..+++ . .+.+++++++.|..+.| +.|.+.+.++.+..
T Consensus 265 ~eei~~Il~~~a~k-------~--~i~is~~al~~I~~y~~----n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 265 DEEIKEIAKNAAEK-------I--GINLEKHALELIVKYAS----NGREAVNIVQLAAG 310 (531)
T ss_pred HHHHHHHHHHHHHH-------c--CCCcCHHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 99999999987754 2 36799999999988765 36889888887654
No 98
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.1e-16 Score=185.45 Aligned_cols=205 Identities=18% Similarity=0.206 Sum_probs=157.9
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCC---------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--------------- 306 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p--------------- 306 (973)
.+|.++|||.+|+++||++..++.+...+.... ++++||+|||||||||+|+.+|+.+.+....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 678999999999999999999998888665544 4678999999999999999999999653210
Q ss_pred ---cccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhh
Q 002068 307 ---QALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML 380 (973)
Q Consensus 307 ---~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l 380 (973)
.......++++|..+- .| ...++.+++.+... +...|+||||+|.+. ...++.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas~------~~--vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASK------TS--VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------KGAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccCC------CC--HHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------HHHHHHHHHHH
Confidence 0111234566654321 11 33466677666532 346799999999997 45677788888
Q ss_pred cC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccccc
Q 002068 381 GR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (973)
Q Consensus 381 ~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i 458 (973)
+. ..+++|++||... .+.+++++||+.+.|..++.++...+++.++++ .++.++++++..++..+.+.
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gs- 222 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGS- 222 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 74 5788888887765 477899999999999999999999999888874 68899999999999988643
Q ss_pred CCCCCchHHHHHHHHHHhhh
Q 002068 459 SGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 459 ~~r~~p~~a~~lld~a~~~~ 478 (973)
+.+++++++.++...
T Consensus 223 -----lR~al~~Ldkai~~~ 237 (507)
T PRK06645 223 -----ARDAVSILDQAASMS 237 (507)
T ss_pred -----HHHHHHHHHHHHHhh
Confidence 458899999987654
No 99
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=7.5e-17 Score=190.39 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=145.2
Q ss_pred CCCCCCCCchHHHHHH---HHHhc---------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 252 GKLDPVIGRDDEIRRC---IQILS---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~l---i~~l~---------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
-+|++++|.+.....+ +..+. ...+.++||+||||||||++|+++|..+ +.+++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~ 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccH
Confidence 3678889987654444 33332 2345689999999999999999999987 888999988
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---ch---hhHHHHHhhhh----cCCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPML----GRGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~---~~~~~~L~~~l----~~g~i~iI~ 389 (973)
+.+.. .+.|..+..++.+|..+... .|+||||||+|.+...+... +. ....+.|+..+ .++.+.+|+
T Consensus 122 ~~~~~--~~~g~~~~~l~~~f~~a~~~-~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 122 SDFVE--MFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHhc-CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Confidence 77653 46777888999999998754 57899999999998655431 11 22333333333 355799999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|||.++ .+|+++.| ||+ .|.|+.|+.++|.+||+..+.... .. ++..+..++..+.+|. +.+
T Consensus 199 aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~----~~-~~~~l~~la~~t~G~s-----gad 263 (495)
T TIGR01241 199 ATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK----LA-PDVDLKAVARRTPGFS-----GAD 263 (495)
T ss_pred ecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----CC-cchhHHHHHHhCCCCC-----HHH
Confidence 999987 69999998 897 699999999999999998776421 11 3344667777776553 446
Q ss_pred HHHHHHHHHhh
Q 002068 467 AIDLVDEAAAK 477 (973)
Q Consensus 467 a~~lld~a~~~ 477 (973)
...++.+|+..
T Consensus 264 l~~l~~eA~~~ 274 (495)
T TIGR01241 264 LANLLNEAALL 274 (495)
T ss_pred HHHHHHHHHHH
Confidence 66777776543
No 100
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=5.8e-17 Score=186.70 Aligned_cols=177 Identities=21% Similarity=0.356 Sum_probs=130.6
Q ss_pred HhcCCCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEE
Q 002068 249 ASAGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 315 (973)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 315 (973)
...-+|+++.|.+..++++.+.+. -..+.++||+||||||||++|+++|+.+...-.........++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 345578999999998888777541 2356789999999999999999999998322110000122344
Q ss_pred EEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchh----hHHHHHhhhhc----CCC
Q 002068 316 SLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAM----DAGNLLKPMLG----RGE 384 (973)
Q Consensus 316 ~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~----~~~~~L~~~l~----~g~ 384 (973)
.+..+.+. .+|.|+.+..++.+|+.+... +.++||||||+|.++..+...... .+.+.|+..++ .++
T Consensus 256 ~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 256 NIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred eccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 44445554 458899999999999988753 358999999999998765443222 22334444443 468
Q ss_pred EEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHH
Q 002068 385 LRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 385 i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~ 432 (973)
+.+|+|||.++ .+||++.| ||+ .|.|+.|+.+++.+||+..+.
T Consensus 334 ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 334 VIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred eEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999988 59999999 998 699999999999999987765
No 101
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.8e-17 Score=188.58 Aligned_cols=198 Identities=26% Similarity=0.392 Sum_probs=149.6
Q ss_pred CCCCCCCCchH---HHHHHHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 252 GKLDPVIGRDD---EIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 252 ~~l~~iiG~~~---~i~~li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
-+|.++.|.++ +|..++..|+. +-+..+||+||||||||.||+++|.+. +.+|++++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 37999999986 66666666643 567899999999999999999999997 999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCC----CchhhHHHHHhhhh---c----CCCEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT----NGAMDAGNLLKPML---G----RGELRCI 388 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~----~~~~~~~~~L~~~l---~----~g~i~iI 388 (973)
++++.. +.|.-..+++++|..++.. .|+|+||||||.+...+.+ .++.+....|.+++ + .+.++++
T Consensus 378 SEFvE~--~~g~~asrvr~lf~~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEM--FVGVGASRVRDLFPLARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHH--hcccchHHHHHHHHHhhcc-CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 998854 5565588999999999864 6899999999999877632 23333334444444 3 4579999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
++||.++ .+|++|+| ||+ .|.++.|+...|.+|++....... ...++..+..++.++.+|. ++
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~----~~~e~~dl~~~a~~t~gf~-----ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK----LDDEDVDLSKLASLTPGFS-----GA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC----CCcchhhHHHHHhcCCCCc-----HH
Confidence 9999998 69999999 998 699999999999999988776422 2223444444666666553 33
Q ss_pred HHHHHHHHHHh
Q 002068 466 KAIDLVDEAAA 476 (973)
Q Consensus 466 ~a~~lld~a~~ 476 (973)
+...++.+|..
T Consensus 521 dl~n~~neaa~ 531 (774)
T KOG0731|consen 521 DLANLCNEAAL 531 (774)
T ss_pred HHHhhhhHHHH
Confidence 55555555544
No 102
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.6e-17 Score=162.92 Aligned_cols=153 Identities=25% Similarity=0.415 Sum_probs=128.4
Q ss_pred ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeE
Q 002068 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQII 351 (973)
Q Consensus 272 ~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~I 351 (973)
.-..+.++|||||||+|||.||+++|..- .|.|+.+..+.++ .+|.|+....++++|-.++.. .|+|
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgselv--qk~igegsrmvrelfvmareh-apsi 243 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV--QKYIGEGSRMVRELFVMAREH-APSI 243 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHH--HHHhhhhHHHHHHHHHHHHhc-CCce
Confidence 34567889999999999999999999986 8999999999888 569999999999999988864 5899
Q ss_pred EEEccccccccCCCCC---chhhHHHHHhhhhc-------CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCC
Q 002068 352 LFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQP 418 (973)
Q Consensus 352 LfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p 418 (973)
+|.||||.+..++..+ |..+++..++.++. ..++.+|.|||..+ -+||++.| |++ .|+|++|
T Consensus 244 ifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred EeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc-----cccHhhcCCCcccccccCCCC
Confidence 9999999998665432 45667766665553 55899999999998 48999999 997 7999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCcc
Q 002068 419 NVEDTISILRGLRERYELHHGVRI 442 (973)
Q Consensus 419 ~~~e~~~il~~~~~~~~~~~~v~i 442 (973)
+.+.+.+||+-...+.....++.+
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~l 342 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGINL 342 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccCH
Confidence 999999999887777766666653
No 103
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.9e-16 Score=195.42 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=148.5
Q ss_pred CCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.++++.|.+...+.+.+.+. ...+.++||+||||||||++|+++|..+ +.+++.++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~ 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRG 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 67788898876666555432 2345678999999999999999999998 789999998
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCch----hhHHHHHhhhhc----CCCEEEEEcc
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLG----RGELRCIGAT 391 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~----~~~~~~L~~~l~----~g~i~iI~at 391 (973)
+.+.+ +|.|+.+..++.+|..++.. .++||||||+|.+.+.++.... ..+.+.|+..++ ..++.+|+||
T Consensus 521 ~~l~~--~~vGese~~i~~~f~~A~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 521 PEILS--KWVGESEKAIREIFRKARQA-APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred HHHhh--cccCcHHHHHHHHHHHHHhc-CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 88874 58999999999999999864 5899999999999876543311 223444444443 5689999999
Q ss_pred CchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-HHHHHHHHHhcccccCCCCCchHH
Q 002068 392 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKA 467 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~-~~~l~~l~~~s~~~i~~r~~p~~a 467 (973)
|.++ .+|+++.| ||+ .|+|+.|+.+++.+||+....+ ..++ +..+..+++.+.+|.+ ...
T Consensus 598 n~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------~~~~~~~~l~~la~~t~g~sg-----adi 661 (733)
T TIGR01243 598 NRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------MPLAEDVDLEELAEMTEGYTG-----ADI 661 (733)
T ss_pred CChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------CCCCccCCHHHHHHHcCCCCH-----HHH
Confidence 9998 59999998 998 6899999999999999865543 2222 2346778888876643 344
Q ss_pred HHHHHHHHhhh
Q 002068 468 IDLVDEAAAKL 478 (973)
Q Consensus 468 ~~lld~a~~~~ 478 (973)
..++.+|+..+
T Consensus 662 ~~~~~~A~~~a 672 (733)
T TIGR01243 662 EAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHHHH
Confidence 55566655443
No 104
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-17 Score=178.15 Aligned_cols=189 Identities=24% Similarity=0.358 Sum_probs=149.4
Q ss_pred hcCCCCCCCCchHHHHHHHHHh------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 250 SAGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
++-.++++-|.+..-+.+-+.+ +|....++||.||||+|||+|++++|-+. +..++.+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~i 217 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNI 217 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEeec
Confidence 4446677777654333333321 34556788999999999999999999998 8899999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCch---hh-HHHHHhhhh-----cCCCEEEE
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MD-AGNLLKPML-----GRGELRCI 388 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~---~~-~~~~L~~~l-----~~g~i~iI 388 (973)
..+++. .+|.|+.+..++.+|.-++.. .|.|+||||+|.++..+..... .. -..+|.+.. ...+|++|
T Consensus 218 SassLt--sK~~Ge~eK~vralf~vAr~~-qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 218 SASSLT--SKYVGESEKLVRALFKVARSL-QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred cHHHhh--hhccChHHHHHHHHHHHHHhc-CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 988887 569999999999999888754 6899999999999987744321 11 123344443 24589999
Q ss_pred EccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 389 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
||||.+. ++|.+++|||+ .++|+.|+.+.+..+|..++.. ++..+++..+..+++++++|...
T Consensus 295 gaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegysgs 358 (428)
T KOG0740|consen 295 GATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYSGS 358 (428)
T ss_pred ecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCcccc
Confidence 9999997 79999999998 6899999999999999999985 36678889999999999998765
No 105
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.6e-17 Score=175.30 Aligned_cols=186 Identities=20% Similarity=0.358 Sum_probs=130.8
Q ss_pred ccccccchHHH---HHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAV---KSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i---~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
.++++||++.+ .-|.+++.. +.+.+++||||||||||++|++||... +.+|..++.-...-
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gv---- 86 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGV---- 86 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccccH----
Confidence 35678888776 344444442 123479999999999999999999988 67888877654311
Q ss_pred hhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
.+...+.+..++ ....|||+|||++++...|+.||..+|+|.++ +|.+|.
T Consensus 87 -------------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii-------------lIGATT 140 (436)
T COG2256 87 -------------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII-------------LIGATT 140 (436)
T ss_pred -------------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE-------------EEeccC
Confidence 111233333321 23579999999999999999999999998754 666665
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
-.+ .=.+.|+|++|+ .++.|.|++.+++.+++.+.+....+.+. +..+.
T Consensus 141 ENP----------------------------sF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~ 189 (436)
T COG2256 141 ENP----------------------------SFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIV 189 (436)
T ss_pred CCC----------------------------CeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCC--ccccc
Confidence 422 012578999999 89999999999999999985544332222 23467
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
++++++++|+... +..+|..-+.++-
T Consensus 190 i~~~a~~~l~~~s---~GD~R~aLN~LE~ 215 (436)
T COG2256 190 LDEEALDYLVRLS---NGDARRALNLLEL 215 (436)
T ss_pred CCHHHHHHHHHhc---CchHHHHHHHHHH
Confidence 9999999999953 2336665555554
No 106
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=1.4e-16 Score=188.05 Aligned_cols=214 Identities=23% Similarity=0.295 Sum_probs=153.8
Q ss_pred hhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
...+|.+++||.+|++++|++..++.+...+......++||+||||||||++|+++++............+.+++.+|++
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 45699999999999999999999999998887778889999999999999999999987543221111125689999976
Q ss_pred ccccccc-----ccchHHHHH---HHH----------HHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC
Q 002068 321 ALIAGAK-----YRGEFEDRL---KAV----------LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 382 (973)
Q Consensus 321 ~~~~g~~-----~~g~~e~~l---~~~----------~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 382 (973)
......+ ..|.....+ ... ...+. ...+++|||||+|.|. .+.++.|..+++.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~-~a~gG~L~IdEI~~L~--------~~~q~~LL~~Le~ 201 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT-RAHGGVLFIDEIGELH--------PVQMNKLLKVLED 201 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhh-ccCCcEEEEechhhCC--------HHHHHHHHHHHHh
Confidence 4210000 000000000 000 00111 2345799999999998 5577777777653
Q ss_pred C------------------------------CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHH
Q 002068 383 G------------------------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 383 g------------------------------~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~ 432 (973)
+ ++++|++||..+. .++|++++||..|.|++++.++..+|++..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 202 RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 2 3578888887664 78999999999999999999999999998887
Q ss_pred HHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhh
Q 002068 433 RYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 433 ~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~ 478 (973)
+ .++.+++++++.+..++. + ...+..+++.|+..+
T Consensus 278 k----~~i~is~~al~~I~~y~~----n---~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 278 K----IGINLEKHALELIVKYAS----N---GREAVNIVQLAAGIA 312 (531)
T ss_pred H----cCCCcCHHHHHHHHHhhh----h---HHHHHHHHHHHHHHH
Confidence 5 568899999998877653 1 246777888777544
No 107
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=1.3e-16 Score=187.02 Aligned_cols=204 Identities=20% Similarity=0.216 Sum_probs=155.7
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
..|.++|||.+|+++||++..++.+...+..++..+ +||+||+|||||++|+.+++.+.+...+..
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 358999999999999999999999999887666554 699999999999999999999865321110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|..+- .| ...++.+++.+.. .+...|+||||+|.|. ....|.|+..++.
T Consensus 84 ~g~~~DvlEidaAs~------~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp 147 (709)
T PRK08691 84 AGRYVDLLEIDAASN------TG--IDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (709)
T ss_pred ccCccceEEEecccc------CC--HHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC
Confidence 01123455553221 11 2346666665432 2345799999999986 4467778888874
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+.+|++||... .+.+.+++||..+.|..++.++....|+.++++ .++.++++++..+++.+.+-
T Consensus 148 ~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gs----- 213 (709)
T PRK08691 148 EHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGS----- 213 (709)
T ss_pred CCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCC-----
Confidence 6788999888765 577899999999999999999999999888874 68899999999999998643
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
...++.++|.++..
T Consensus 214 -lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 -MRDALSLLDQAIAL 227 (709)
T ss_pred -HHHHHHHHHHHHHh
Confidence 45789999988764
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.8e-16 Score=182.05 Aligned_cols=204 Identities=23% Similarity=0.250 Sum_probs=157.6
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCc--------------c
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ--------------A 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~--------------~ 308 (973)
.|.++|||.+|+++||++..++.+...+..+..+|. ||+||+|+|||++|+.+++.+.+.+.+. .
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 478999999999999999999999998877776665 8999999999999999999996543221 1
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
..+..++.+|.++ .+| ...++.+++.+... +...|++|||+|.|. .+++|.|+..++. .
T Consensus 83 ~~h~dv~eldaas------~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 83 NRHIDIIEMDAAS------NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (535)
T ss_pred cCCCeEEEecccc------ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcCC
Confidence 1233455554322 111 23455555544322 345699999999997 5678889999985 5
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+.+|.+|+... .+.+++++||+.+.|.+++.++....++.++.+ .++.++++++..++..+.+ .
T Consensus 147 ~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~G------d 211 (535)
T PRK08451 147 YVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNG------S 211 (535)
T ss_pred ceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------c
Confidence 688888887753 677999999999999999999999888888774 5889999999999999863 3
Q ss_pred chHHHHHHHHHHhhh
Q 002068 464 PDKAIDLVDEAAAKL 478 (973)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (973)
+.++..+++.++...
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 458889999888754
No 109
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9e-17 Score=171.45 Aligned_cols=184 Identities=24% Similarity=0.412 Sum_probs=143.1
Q ss_pred CCCCCCCchHHHHHHHHHh----c----------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 253 KLDPVIGRDDEIRRCIQIL----S----------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l----~----------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+|+++-|.+..+..+-+.. . -+.+.++||+||||||||.+|+++|++. ++.++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 4666666666655555432 0 1345789999999999999999999997 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHh-hhh---------cCCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLK-PML---------GRGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~-~~l---------~~g~i~iI 388 (973)
++.+++ ++-|+.++.++.+|.-+.+- .|+|+||||++.+++.+.+. .-++...++ +++ ++.+|.++
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl-~P~iIFIDEvds~L~~R~s~-dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKL-QPSIIFIDEVDSFLGQRRST-DHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhc-CcceeehhhHHHHHhhcccc-hHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 999985 78899999999999988765 58999999999999887433 333433443 333 12369999
Q ss_pred EccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 389 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
||||++- .+|.++.||+. .+.|..|+.++|.+||+-+++......++ .+..++..+.+|.+.
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~v-----D~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDV-----DLDEIAQMTEGYSGS 298 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCccc-----CHHHHHHhcCCCcHH
Confidence 9999984 89999999996 79999999999999999999864433333 466788889888654
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.8e-16 Score=185.33 Aligned_cols=202 Identities=20% Similarity=0.190 Sum_probs=150.8
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.+|+++|||.+|+++||++..++.+...+.... .+++||+||+|||||++|+.+|+.+.+..-+..
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 368999999999999999999888888876654 567889999999999999999999965321110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---HhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~---~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|...- .| ...++.+.+.+. ..+...|+||||+|.|. .+.++.|+..++.
T Consensus 84 ~g~hpDv~eId~a~~------~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~ 147 (624)
T PRK14959 84 QGMHVDVVEIDGASN------RG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPP 147 (624)
T ss_pred cCCCCceEEEecccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccC
Confidence 11223566653221 11 122333333332 23446799999999997 4567888888875
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+++|++||... .+.+.+++||+.|.|..++.++...+|+.++.+ .++.++++++..++.++.+.
T Consensus 148 ~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gd----- 213 (624)
T PRK14959 148 ARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGS----- 213 (624)
T ss_pred CCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 6788999888765 456789999999999999999999988887763 57889999999999998643
Q ss_pred CchHHHHHHHHHH
Q 002068 463 LPDKAIDLVDEAA 475 (973)
Q Consensus 463 ~p~~a~~lld~a~ 475 (973)
..+++++++.++
T Consensus 214 -lR~Al~lLeqll 225 (624)
T PRK14959 214 -VRDSMSLLGQVL 225 (624)
T ss_pred -HHHHHHHHHHHH
Confidence 347888888764
No 111
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=5.7e-16 Score=169.01 Aligned_cols=165 Identities=22% Similarity=0.264 Sum_probs=128.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDE 356 (973)
.++||+||||||||++|+++|+.+..... ....+++.+++..+.. .+.|+.+..+..+++.+ .++||||||
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~~l~~--~~~g~~~~~~~~~~~~a----~~gvL~iDE 129 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRDDLVG--QYIGHTAPKTKEILKRA----MGGVLFIDE 129 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHHHHhH--hhcccchHHHHHHHHHc----cCcEEEEec
Confidence 47899999999999999999999865321 1234688998877764 46777777777777765 346999999
Q ss_pred ccccccCCCC-CchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHH
Q 002068 357 IHTVVGAGAT-NGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 357 i~~l~~~~~~-~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~ 432 (973)
+|.+.+.+.. ....++++.|...++. +++++|++++.+....++.++|+|.+||. .|.|+.++.+++..|++.++.
T Consensus 130 i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 130 AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 9998643222 2335667788888864 58899999998777777788999999997 799999999999999999888
Q ss_pred HHhhhcCCccCHHHHHHHHHhc
Q 002068 433 RYELHHGVRISDSALVEAAILS 454 (973)
Q Consensus 433 ~~~~~~~v~i~~~~l~~l~~~s 454 (973)
+ .+..++++++..+..+.
T Consensus 210 ~----~~~~l~~~a~~~L~~~l 227 (284)
T TIGR02880 210 E----QQYRFSAEAEEAFADYI 227 (284)
T ss_pred H----hccccCHHHHHHHHHHH
Confidence 6 34668888888776654
No 112
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-16 Score=180.87 Aligned_cols=185 Identities=25% Similarity=0.385 Sum_probs=144.9
Q ss_pred CCCCCCCchHHHHHHHHHhcc-------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~-------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
..+++-|..+..+.+.+++.- +.+.++|||||||||||.||-++|... +..|+++..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 345566655544444444321 345689999999999999999999987 889999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC--ch-hhHHHHHhhhhc--CC--CEEEEEccC
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN--GA-MDAGNLLKPMLG--RG--ELRCIGATT 392 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~--~~-~~~~~~L~~~l~--~g--~i~iI~at~ 392 (973)
.++. .+|.|..|+.++.+|..+.. ..|||||+||+|.+.+.++.. |. ..+.|-|+..|+ .| .+.+++||+
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~-a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs 811 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQS-AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS 811 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhc-cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC
Confidence 8888 56999999999999999976 469999999999999877654 33 335666666665 22 688999999
Q ss_pred chHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 393 LDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
++++ +||||+| |++ .|+.+.|+..+|++|++.+...+... ++..++.++..+++|.+.
T Consensus 812 Rpdl-----iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 812 RPDL-----IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred Cccc-----cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCchh
Confidence 9984 9999999 998 58999999999999999888753322 345677888888887653
No 113
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.3e-17 Score=161.70 Aligned_cols=152 Identities=24% Similarity=0.390 Sum_probs=126.3
Q ss_pred cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEE
Q 002068 273 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIIL 352 (973)
Q Consensus 273 ~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~IL 352 (973)
-.++.++|+|||||||||+||+++|+.- ...|+.+..+.++ .+|.|+....++++|..++. +.|.|+
T Consensus 186 idpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlake-napsii 252 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NAPSII 252 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhc-cCCcEE
Confidence 3577899999999999999999999875 6789999988887 56999999999999999886 468999
Q ss_pred EEccccccccCCC---CCchhhHHHHHhhhhc-------CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCC
Q 002068 353 FIDEIHTVVGAGA---TNGAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPN 419 (973)
Q Consensus 353 fiDEi~~l~~~~~---~~~~~~~~~~L~~~l~-------~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~ 419 (973)
||||++.+...+- ++...+++.+|..++. .-++.+|.+||..+ .+||+++| |++ .|+|+.|+
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCCc
Confidence 9999999874432 2244678888877764 34899999999998 69999999 997 79999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcc
Q 002068 420 VEDTISILRGLRERYELHHGVRI 442 (973)
Q Consensus 420 ~~e~~~il~~~~~~~~~~~~v~i 442 (973)
..+.+-++..+..++.....+.+
T Consensus 328 rrqkrlvf~titskm~ls~~vdl 350 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDL 350 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCH
Confidence 99999999988887655444443
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.4e-16 Score=181.84 Aligned_cols=203 Identities=21% Similarity=0.210 Sum_probs=156.4
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------- 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 308 (973)
.|.++|||.+|+++||++..++.+...+.....+|. ||+||||||||++|+.+|+.+.+...+..
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 589999999999999999999999998887776665 89999999999999999999855321110
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
.....++.+|.+.- . ....++.+++.+... ++..|+||||+|.|. ..++|.|+..++. +
T Consensus 85 ~~~~d~~ei~~~~~------~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~~a~naLLK~LEepp~ 148 (527)
T PRK14969 85 GRFVDLIEVDAASN------T--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------KSAFNAMLKTLEEPPE 148 (527)
T ss_pred CCCCceeEeecccc------C--CHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------HHHHHHHHHHHhCCCC
Confidence 01124555554321 1 123466666666432 345699999999997 4567888888875 5
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+.+|++||... .+.+.+++||..+.|..++.++..+.+..++.+ .++.++++++..++..+.+ .
T Consensus 149 ~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~G------s 213 (527)
T PRK14969 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAG------S 213 (527)
T ss_pred CEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------C
Confidence 788999988765 456789999999999999999998888877764 5788999999999999864 3
Q ss_pred chHHHHHHHHHHhh
Q 002068 464 PDKAIDLVDEAAAK 477 (973)
Q Consensus 464 p~~a~~lld~a~~~ 477 (973)
+..++.+++.+++.
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 45899999988775
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=181.69 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=146.7
Q ss_pred hcCCCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 250 SAGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
.+-+++++.|.+..++.+.+.+. -..+.++||+||||||||++|+++|..+ +.+++.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~ 247 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLR 247 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEE
Confidence 34577888998888777776542 1345678999999999999999999987 677888
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCC---CchhhHHHHHhhhh-------cCCCEE
Q 002068 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPML-------GRGELR 386 (973)
Q Consensus 317 l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~---~~~~~~~~~L~~~l-------~~g~i~ 386 (973)
+..+.+.. +|.|+.+..++.+|..+.. ..++||||||+|.+...+.. .+..++...+..++ ..+++.
T Consensus 248 V~~seL~~--k~~Ge~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 248 VVGSELIQ--KYLGDGPKLVRELFRVAEE-NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred Eecchhhh--hhcchHHHHHHHHHHHHHh-CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 88877763 5888888889999988875 46899999999999865432 23333443333333 256899
Q ss_pred EEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 387 CIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 387 iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
+|+|||..+ .+|+++.| ||+ .|.|+.|+.+++.+||+....++....+ ..+..++..+.+|.
T Consensus 325 VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-----vdl~~la~~t~g~s----- 389 (438)
T PTZ00361 325 VIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-----VDLEEFIMAKDELS----- 389 (438)
T ss_pred EEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-----cCHHHHHHhcCCCC-----
Confidence 999999887 58999987 997 7999999999999999987764322212 23455666666553
Q ss_pred chHHHHHHHHHHhhh
Q 002068 464 PDKAIDLVDEAAAKL 478 (973)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (973)
+.....++.+|+..+
T Consensus 390 gAdI~~i~~eA~~~A 404 (438)
T PTZ00361 390 GADIKAICTEAGLLA 404 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666665543
No 116
>CHL00176 ftsH cell division protein; Validated
Probab=99.70 E-value=4.7e-16 Score=185.28 Aligned_cols=198 Identities=24% Similarity=0.345 Sum_probs=143.3
Q ss_pred CCCCCCCCchHHHHH---HHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 252 GKLDPVIGRDDEIRR---CIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~---li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
-+|++++|.++..+. ++..+.. ..+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 367889998764444 4433322 235689999999999999999999987 889999988
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCC---Cchhh---HHHHHhhhh----cCCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMD---AGNLLKPML----GRGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~---~~~~~---~~~~L~~~l----~~g~i~iI~ 389 (973)
+.+.. .+.|....+++.+|..+.. ..|+||||||+|.+...+.. .+... ..+.|+..+ .+..+.+|+
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKE-NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhc-CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 87653 3566667788889998875 45899999999999754322 12222 223333333 345799999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
+||..+ .+|+++.| ||+ .|.|+.|+.++|.+||+..+... ...++..+..++..+.+| .+..
T Consensus 327 aTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t~G~-----sgaD 391 (638)
T CHL00176 327 ATNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRTPGF-----SGAD 391 (638)
T ss_pred ecCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcCCCC-----CHHH
Confidence 999987 58999998 897 68999999999999999887741 123455667777777654 3446
Q ss_pred HHHHHHHHHhh
Q 002068 467 AIDLVDEAAAK 477 (973)
Q Consensus 467 a~~lld~a~~~ 477 (973)
...++++|+..
T Consensus 392 L~~lvneAal~ 402 (638)
T CHL00176 392 LANLLNEAAIL 402 (638)
T ss_pred HHHHHHHHHHH
Confidence 66777777644
No 117
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.2e-16 Score=161.71 Aligned_cols=259 Identities=24% Similarity=0.434 Sum_probs=178.3
Q ss_pred HHHHhhccccccchHHHHHHHHHHHH-HHc-cCC----CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecc
Q 002068 642 HLEEELHKRVVGQDPAVKSVAEAIQR-SRA-GLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (973)
Q Consensus 642 ~l~~~l~~~v~Gq~~~i~~l~~~i~~-~~~-~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (973)
.+-+.|.+.|+||+++++.+.-+++. |+. .+. +---|. ++|..||+|+|||++||.||+.. +.||+.+..
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~---~aPFiKVEA 83 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVEA 83 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCcc-ceEEECCCCCcHHHHHHHHHHHh---CCCeEEEEe
Confidence 45566778999999999999888843 332 111 111244 79999999999999999999999 889998888
Q ss_pred ccccchhhhh----------------------------------------hhcCCCCCcc--------------------
Q 002068 716 SEYMEKHAVS----------------------------------------RLIGAPPGYV-------------------- 735 (973)
Q Consensus 716 ~~~~~~~~~~----------------------------------------~l~G~~~g~~-------------------- 735 (973)
..|++-.-+. .|++.++.+.
T Consensus 84 TKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkL 163 (444)
T COG1220 84 TKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKL 163 (444)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHH
Confidence 7775421110 0222211000
Q ss_pred ----------------------------ccccc-chhhHHH---------------------------------------
Q 002068 736 ----------------------------GYEEG-GQLTEVV--------------------------------------- 747 (973)
Q Consensus 736 ----------------------------g~~~~-~~l~~~~--------------------------------------- 747 (973)
|..+. .++.+.+
T Consensus 164 r~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~e 243 (444)
T COG1220 164 REGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQE 243 (444)
T ss_pred HcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 00000 0011111
Q ss_pred --H-hCCCeEEEEccccccC------------HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCC
Q 002068 748 --R-RRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDE 812 (973)
Q Consensus 748 --~-~~~~~Vl~lDEid~l~------------~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~ 812 (973)
. ....+|+|||||||.. ..||.-||.+++...+.-.+| .+...+.+||++.-. ++..
T Consensus 244 Ai~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAF---h~sK---- 315 (444)
T COG1220 244 AIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAF---HVAK---- 315 (444)
T ss_pred HHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCce---ecCC----
Confidence 1 1235799999999864 349999999999777766555 355567778876544 2222
Q ss_pred CCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhcCCceecCHHHHHH
Q 002068 813 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQL 888 (973)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~~ 888 (973)
.+.+-|+|.+||-.-|.+.+|+.+++..|+. ..++.+..-+...|+.+.|++++++.
T Consensus 316 -------------------PSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~ 376 (444)
T COG1220 316 -------------------PSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKR 376 (444)
T ss_pred -------------------hhhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHH
Confidence 2347789999999999999999999999987 44566666677779999999999999
Q ss_pred HHhcCCC-----CCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 889 LGSLGYD-----PNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 889 L~~~~~~-----~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
|++.+|. .|.|||-|..++++.+..-- .+-.-..|.+|.|+.+
T Consensus 377 iAeiA~~vN~~~ENIGARRLhTvlErlLediS----FeA~d~~g~~v~Id~~ 424 (444)
T COG1220 377 IAEIAYQVNEKTENIGARRLHTVLERLLEDIS----FEAPDMSGQKVTIDAE 424 (444)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHhC----ccCCcCCCCeEEEcHH
Confidence 9998774 46899999999888655422 2223346888877654
No 118
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=5.4e-16 Score=173.79 Aligned_cols=189 Identities=25% Similarity=0.291 Sum_probs=139.5
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHHHhc-----cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 246 TAMASAGKLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 246 ~~~~~~~~l~~iiG~~~~i~~li~~l~-----~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
..++||.+|++++|+++.++.+...+. ....+++||+||||||||++|+.+|+.+ +..+...+..
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~ 85 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGP 85 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecc
Confidence 567899999999999999888876653 2345689999999999999999999998 5555555433
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC------------------
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR------------------ 382 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~------------------ 382 (973)
.+. . ...+..++..+ ..+.||||||+|.+.. ...+.|...++.
T Consensus 86 ~~~----~----~~~l~~~l~~l---~~~~vl~IDEi~~l~~--------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 86 ALE----K----PGDLAAILTNL---EEGDVLFIDEIHRLSP--------VVEEILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred ccc----C----hHHHHHHHHhc---ccCCEEEEecHhhcch--------HHHHHHHHHHHhcceeeeeccCccccceee
Confidence 221 1 11233444333 3467999999999863 234445444432
Q ss_pred --CCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 383 --GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 383 --g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
..+.+|++||... .+++++++||. .+.++.|+.+++.+|++..... .++.++++++..++..+.++
T Consensus 147 ~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~-- 215 (328)
T PRK00080 147 DLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGT-- 215 (328)
T ss_pred cCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCC--
Confidence 2367899998875 57899999996 6899999999999999877764 58889999999999998643
Q ss_pred CCCCchHHHHHHHHHHhhh
Q 002068 460 GRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 460 ~r~~p~~a~~lld~a~~~~ 478 (973)
|..+..+++.+....
T Consensus 216 ----pR~a~~~l~~~~~~a 230 (328)
T PRK00080 216 ----PRIANRLLRRVRDFA 230 (328)
T ss_pred ----chHHHHHHHHHHHHH
Confidence 557777777655433
No 119
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=7.1e-16 Score=182.73 Aligned_cols=203 Identities=20% Similarity=0.224 Sum_probs=156.2
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------- 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 308 (973)
.|.++|||.+|++++|++..++.+.+.+......| +||+||+|||||++|+.+|+.+.+.+.+..
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 47789999999999999999999999887766666 588999999999999999999865432211
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
.....++.+|.++- .....++.+.+.+.. .+...|+||||+|.|. ....|.|+..++. .
T Consensus 85 g~~~dv~eidaas~--------~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp~ 148 (559)
T PRK05563 85 GSLMDVIEIDAASN--------NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPPA 148 (559)
T ss_pred CCCCCeEEeecccc--------CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCCC
Confidence 12335666654321 113346666666553 2346799999999997 4567788888875 4
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+++|++|+... .+.+.+++||+.+.|..|+.++....++.++++ .++.++++++..++..+.+ -
T Consensus 149 ~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G------~ 213 (559)
T PRK05563 149 HVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEG------G 213 (559)
T ss_pred CeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------C
Confidence 678888887664 578999999999999999999999888887773 6889999999999998863 3
Q ss_pred chHHHHHHHHHHhh
Q 002068 464 PDKAIDLVDEAAAK 477 (973)
Q Consensus 464 p~~a~~lld~a~~~ 477 (973)
+..++.+++.+++.
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 44788888887764
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=3.2e-15 Score=184.86 Aligned_cols=182 Identities=19% Similarity=0.252 Sum_probs=130.0
Q ss_pred CCCCchHHHHHHHHHhccC-------C-C-CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc-
Q 002068 256 PVIGRDDEIRRCIQILSRR-------T-K-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG- 325 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~-------~-~-~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g- 325 (973)
.++||+..+..+.+.+.+. . + ..+||+||||||||.+|++||+.+..+ ...++.+|++.+...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEAH 639 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhhh
Confidence 5899999999999987431 1 1 236999999999999999999998543 347889998876321
Q ss_pred ---------ccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 326 ---------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 326 ---------~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
..|.|..+.. .+.++.+..+.+||+|||++.+. .++.++|.++++.|
T Consensus 640 ~~~~l~g~~~gyvg~~~~g---~L~~~v~~~p~svvllDEieka~--------~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGG---VLTEAVRRKPYSVVLLDEVEKAH--------PDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred hhccccCCCCCcccccccc---hHHHHHHhCCCcEEEEechhhcC--------HHHHHHHHHHhhcceeecCCCcEEecc
Confidence 1244432221 22233334567899999999776 67889999999755
Q ss_pred CEEEEEccCchH--H-------------H---h------hhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh----
Q 002068 384 ELRCIGATTLDE--Y-------------R---K------YIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE---- 435 (973)
Q Consensus 384 ~i~iI~at~~~~--~-------------~---~------~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~---- 435 (973)
+..+|+|||... + . . .-.+.|+|.+|++.|.|.+.+.++..+|+...+..+.
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457888887411 0 0 0 0125699999999888888899999999977665432
Q ss_pred hh--cCCccCHHHHHHHHHhcc
Q 002068 436 LH--HGVRISDSALVEAAILSD 455 (973)
Q Consensus 436 ~~--~~v~i~~~~l~~l~~~s~ 455 (973)
.. ..+.++++++.++++.+.
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~ 810 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcC
Confidence 22 236789999999998874
No 121
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.69 E-value=1.2e-16 Score=158.70 Aligned_cols=205 Identities=17% Similarity=0.251 Sum_probs=156.1
Q ss_pred HhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 239 EKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 239 ~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
..|..+|.++|||..+.++||.++.+.++--+...++.+|++|.|||||||||-+.+||+++..... .-.++++|
T Consensus 11 ~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELN 85 (333)
T KOG0991|consen 11 DKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELN 85 (333)
T ss_pred ccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhcc
Confidence 3466679999999999999999999999999988899999999999999999999999999854321 12467777
Q ss_pred cccccccccccc--hHHHHHHHHHHHHHH--hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccC
Q 002068 319 MGALIAGAKYRG--EFEDRLKAVLKEVTE--SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATT 392 (973)
Q Consensus 319 ~~~~~~g~~~~g--~~e~~l~~~~~~~~~--~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~ 392 (973)
.++- +| -+..+++..-..-.. .+...|+++||+|.+. ..++..|++.++ ....+++.++|
T Consensus 86 ASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT--------~gAQQAlRRtMEiyS~ttRFalaCN 151 (333)
T KOG0991|consen 86 ASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT--------AGAQQALRRTMEIYSNTTRFALACN 151 (333)
T ss_pred Cccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh--------hHHHHHHHHHHHHHcccchhhhhhc
Confidence 6653 33 122233222111000 1334699999999998 346778998887 66788999999
Q ss_pred chHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
..+ ++-.++.+||..+.+...+..+.+.-|..+.+ ..++.++++.+++++..+++-+. ++++.|.
T Consensus 152 ~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDMR------QalNnLQ 216 (333)
T KOG0991|consen 152 QSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDMR------QALNNLQ 216 (333)
T ss_pred chh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchHH------HHHHHHH
Confidence 876 46689999999999999999887777766665 47899999999999998875443 5666666
Q ss_pred HHHhh
Q 002068 473 EAAAK 477 (973)
Q Consensus 473 ~a~~~ 477 (973)
...+.
T Consensus 217 st~~g 221 (333)
T KOG0991|consen 217 STVNG 221 (333)
T ss_pred HHhcc
Confidence 65554
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=8.2e-16 Score=178.88 Aligned_cols=204 Identities=18% Similarity=0.225 Sum_probs=153.5
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCC-CceEECCCCCcHHHHHHHHHHHHhcCCCCc--c-----------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--A----------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~-~~LL~GppG~GKT~la~~la~~l~~~~~p~--~----------- 308 (973)
..|.++|||..|++++||+..++.+.+.+.....+ .+||+||+|+|||++|+.+|+.+.+..... .
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 36899999999999999999999999988665544 478999999999999999999996532110 0
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++++|.++. .| .+.++.+++.+... ++..|++|||+|.|. ..+++.|+..++.
T Consensus 84 ~~~h~DiieIdaas~------ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAASN------NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEeccccc------cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHHHhCC
Confidence 01224555554321 11 22355555554432 345699999999996 3467888888874
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
+.+++|++|+... .+.+++++||+.+.|..++.++....++.++.+ .++.++++++..++.++.+.
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gd----- 213 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGS----- 213 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-----
Confidence 5788888887653 577999999999999999999999888887774 57889999999999998643
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
+..++.+++..+..
T Consensus 214 -lR~AlnlLekL~~y 227 (605)
T PRK05896 214 -LRDGLSILDQLSTF 227 (605)
T ss_pred -HHHHHHHHHHHHhh
Confidence 45788888876554
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=8.2e-16 Score=181.92 Aligned_cols=204 Identities=22% Similarity=0.268 Sum_probs=156.8
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCC-CceEECCCCCcHHHHHHHHHHHHhcCCC-----Cc---------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDV-----PQ--------- 307 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~-~~LL~GppG~GKT~la~~la~~l~~~~~-----p~--------- 307 (973)
..|.++|||.+|+++||++..++.+.+.+.+.+.. .+||+||+|||||++|+.+|+.+.+... |.
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 46899999999999999999999999988776655 4899999999999999999999865321 10
Q ss_pred -----ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhh
Q 002068 308 -----ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (973)
Q Consensus 308 -----~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (973)
...+..+++++..+. .| ...++.+++.+.. .+...|++|||+|.|. ....|.|+..
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~------~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASH------TG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEeccccc------CC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHH
Confidence 011234555554321 11 2346667666653 2346699999999997 4567888888
Q ss_pred hcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 380 LGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 380 l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
|++ +.+.+|++|+... .+.+.+++||+.+.|..++.++....++.++.+ .++.++++++..++..+.+.
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 875 5788888887665 366889999999999999999999998888774 68899999999999998744
Q ss_pred cCCCCCchHHHHHHHHHHhh
Q 002068 458 ISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 458 i~~r~~p~~a~~lld~a~~~ 477 (973)
+..+..+++.++..
T Consensus 227 ------lr~al~~Ldkli~~ 240 (598)
T PRK09111 227 ------VRDGLSLLDQAIAH 240 (598)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 44788888887654
No 124
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.68 E-value=8e-16 Score=175.77 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=161.9
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
..|..+|||..|++++||+..++.+.+.+...+-.| .||.||-||||||+||.+|+.+.+.+.+..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 357889999999999999999999999886655444 689999999999999999999976542210
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 383 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g- 383 (973)
.....++++|..+- . .-+.++.+.+.+... +..-|++|||+|+|+ ..+.|.|+..++..
T Consensus 84 ~g~~~DviEiDaASn------~--gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP 147 (515)
T COG2812 84 EGSLIDVIEIDAASN------T--GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPP 147 (515)
T ss_pred cCCcccchhhhhhhc------c--ChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCc
Confidence 11123334433221 1 233566777776642 345699999999998 56788888888754
Q ss_pred -CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 384 -ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 384 -~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
.|.+|.|||... ++++.+.+||+.+.|...+.++....|..++.+ .++.++++++..+++.+++-+.
T Consensus 148 ~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs~R--- 215 (515)
T COG2812 148 SHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGSLR--- 215 (515)
T ss_pred cCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCChh---
Confidence 799999999987 799999999999999999999999888888874 7999999999999999986543
Q ss_pred CchHHHHHHHHHHhhh
Q 002068 463 LPDKAIDLVDEAAAKL 478 (973)
Q Consensus 463 ~p~~a~~lld~a~~~~ 478 (973)
++..++|.+.+..
T Consensus 216 ---DalslLDq~i~~~ 228 (515)
T COG2812 216 ---DALSLLDQAIAFG 228 (515)
T ss_pred ---hHHHHHHHHHHcc
Confidence 6889999998864
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.3e-16 Score=184.02 Aligned_cols=204 Identities=21% Similarity=0.217 Sum_probs=156.8
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCc--------------c
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ--------------A 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~--------------~ 308 (973)
-|.++|||.+|+++||++..++.+.+.+..+...| +||+||+|+|||++|+.+++.+.+.+.+. .
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 47899999999999999999999999887766666 58999999999999999999996532211 0
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--C
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 383 (973)
.....++++|..+ ..| .+.++.+.+.+... +...|++|||+|.|. ...+|.|+..|+. +
T Consensus 85 g~~~d~~eid~~s------~~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~ 148 (576)
T PRK14965 85 GRSVDVFEIDGAS------NTG--VDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPP 148 (576)
T ss_pred CCCCCeeeeeccC------ccC--HHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCC
Confidence 1122355554322 111 23456666655432 345699999999997 4578889999985 5
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
.+++|++||... .+.+.+++||+.+.|..++.++....++.++.+ .++.++++++..++..+.+-
T Consensus 149 ~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~------ 213 (576)
T PRK14965 149 HVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGS------ 213 (576)
T ss_pred CeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC------
Confidence 788998888764 577899999999999999999988888887774 68899999999999999743
Q ss_pred chHHHHHHHHHHhhh
Q 002068 464 PDKAIDLVDEAAAKL 478 (973)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (973)
..+++.++|.+++..
T Consensus 214 lr~al~~Ldqliay~ 228 (576)
T PRK14965 214 MRDSLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHHHHHHHHhc
Confidence 347888999887764
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1e-15 Score=181.41 Aligned_cols=203 Identities=20% Similarity=0.257 Sum_probs=153.5
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcc-----------cC
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA-----------LM 310 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~-----------l~ 310 (973)
..|.++|||.+|+++||++..++.+...+......|. ||+||+|||||++|+.+|+.+.+...... ..
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4689999999999999999999999998877665664 89999999999999999999866331110 01
Q ss_pred CCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCE
Q 002068 311 NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GEL 385 (973)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i 385 (973)
+..++.++..+ ..| ...++.+++.+... +...|++|||+|.|. ..+++.|+..|+. +.+
T Consensus 86 ~~Dvieidaas------n~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAAS------NNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEeccc------cCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhhcCCCce
Confidence 12234443211 111 23366666666532 446699999999997 4577888888875 468
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
++|++|+... .+.+.+++||+.+.|.+++.++....|+.++.+ .++.++++++..++.++.+- +.
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gs------lR 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGS------LR 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HH
Confidence 8888887664 577899999999999999999999998887764 57889999999999998733 34
Q ss_pred HHHHHHHHHHh
Q 002068 466 KAIDLVDEAAA 476 (973)
Q Consensus 466 ~a~~lld~a~~ 476 (973)
.|+.+++..+.
T Consensus 215 ~AlslLekl~~ 225 (725)
T PRK07133 215 DALSIAEQVSI 225 (725)
T ss_pred HHHHHHHHHHH
Confidence 78888887654
No 127
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.3e-16 Score=158.82 Aligned_cols=182 Identities=23% Similarity=0.370 Sum_probs=139.3
Q ss_pred CCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
..+++-|.++.|+.+++.+ .-+++.++|+|||||||||.+|++-|..- +..|+.+-.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcc
Confidence 3556788888999888864 23567789999999999999999988775 666666655
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc-------CCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~g~i~iI~ 389 (973)
..++ .+|.|+....+++.|..++.. .|+|+||||++.+...+..+ |..+++..++.++. ..++.+|+
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEk-aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviA 315 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEK-APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIA 315 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhcc-CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEe
Confidence 5554 458898888999999888764 58999999999987544322 66777776666653 45899999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
+||..+ -+||++.| |++ .|+|+.|+.+.|..|++-...++....++. .+.+++.++.|
T Consensus 316 ATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN-----feELaRsTddF 376 (424)
T KOG0652|consen 316 ATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN-----FEELARSTDDF 376 (424)
T ss_pred eccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC-----HHHHhhccccc
Confidence 999998 48999999 997 799999999999999987776544433443 34455555544
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=6.5e-16 Score=172.80 Aligned_cols=186 Identities=17% Similarity=0.210 Sum_probs=139.6
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceE-ECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVL-IGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL-~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
..|.++|||.+|++++|++...+.+...+.++..+|++| +||||+|||++|+++++.+ +.+++.++++.
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~ 78 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD 78 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc
Confidence 468999999999999999999999988887777677766 8999999999999999987 55677777654
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchHHHhh
Q 002068 322 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYRKY 399 (973)
Q Consensus 322 ~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~~~~~ 399 (973)
. + .......+............+.||||||+|.+.. .+..+.|+.+++ .+.+++|++||...
T Consensus 79 --~--~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~---- 142 (316)
T PHA02544 79 --C--R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN---- 142 (316)
T ss_pred --c--c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh----
Confidence 1 1 1222222322222221123467999999998831 335667777776 35788899888664
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh---hhcCCccCHHHHHHHHHhcc
Q 002068 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE---LHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~---~~~~v~i~~~~l~~l~~~s~ 455 (973)
.+.+++++||..+.++.|+.+++..+++.+...+. ...++.++++++..++..+.
T Consensus 143 -~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 -GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred -hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 57899999999999999999999988877665543 23688899999988887664
No 129
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=9.1e-16 Score=178.82 Aligned_cols=201 Identities=23% Similarity=0.246 Sum_probs=152.0
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCC-CCc------------ccC
Q 002068 245 LTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGD-VPQ------------ALM 310 (973)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~-~p~------------~l~ 310 (973)
|.++|||..|++++|++..++.+...+......|. ||+|||||||||+|+.+|+.+.+.+ .+. ...
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 67899999999999999999999888877777776 9999999999999999999996421 110 012
Q ss_pred CCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCE
Q 002068 311 NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GEL 385 (973)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i 385 (973)
...++.++.+.. .+ ...++.+.+.+.. .+...|++|||+|.+. .+.++.|+..++. ..+
T Consensus 84 h~dv~el~~~~~------~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 84 HPDVLEIDAASN------NS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEHV 147 (504)
T ss_pred CCceEEeccccc------CC--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCCE
Confidence 234666664321 11 2234455444432 2345699999999886 4566777777775 467
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
++|.+|+... .+.+.+.+||..+.|..|+.++....++.++.+ .++.++++++..++..+.+. ..
T Consensus 148 ~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gd------lR 212 (504)
T PRK14963 148 IFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGA------MR 212 (504)
T ss_pred EEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HH
Confidence 8888887664 578999999999999999999999999888874 68899999999999999744 34
Q ss_pred HHHHHHHHHHh
Q 002068 466 KAIDLVDEAAA 476 (973)
Q Consensus 466 ~a~~lld~a~~ 476 (973)
+++.+++.++.
T Consensus 213 ~aln~Lekl~~ 223 (504)
T PRK14963 213 DAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHh
Confidence 78888887654
No 130
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.68 E-value=8.2e-16 Score=180.40 Aligned_cols=227 Identities=20% Similarity=0.270 Sum_probs=172.2
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcC
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 729 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G 729 (973)
.++|.+..+..+...+..... . ..+++++|++||||+++|++++....+...+|+.+||+.+.+....+.++|
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----~---~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----S---EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----C---CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcC
Confidence 356677766666655543221 1 126899999999999999999999877789999999999877666678888
Q ss_pred CCCCcc-cccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 730 APPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 730 ~~~g~~-g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
...|.. |... ...+.+..+.+++||||||+.+++.+|..|++++++|.+....+......++.+|+||+........
T Consensus 213 ~~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~ 290 (441)
T PRK10365 213 HEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN 290 (441)
T ss_pred CCCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 766532 2111 1234566778999999999999999999999999999876544444344578899999875433222
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHH
Q 002068 809 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAA 885 (973)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a 885 (973)
...|+++|+.|+.. .|.+||+. .+|+..++..++.++..+.... ...+++++
T Consensus 291 -----------------------~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a 345 (441)
T PRK10365 291 -----------------------AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQA 345 (441)
T ss_pred -----------------------cCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHH
Confidence 35689999999964 68888887 4589999999998876554322 34699999
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 886 IQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 886 ~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++.|..+.|++| .|+|++++++.+.
T Consensus 346 ~~~L~~~~wpgN--~reL~~~~~~~~~ 370 (441)
T PRK10365 346 MDLLIHYDWPGN--IRELENAVERAVV 370 (441)
T ss_pred HHHHHhCCCCCH--HHHHHHHHHHHHH
Confidence 999999999887 8999999998654
No 131
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=1.6e-15 Score=168.76 Aligned_cols=181 Identities=27% Similarity=0.301 Sum_probs=131.9
Q ss_pred CCCCCCCchHHHHHHHHHhc-----cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc
Q 002068 253 KLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~-----~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+|+++|||++.++.+...+. ....++++|+||||||||++|+.+|+.+ +..+..++.+...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~---- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE---- 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc----
Confidence 57889999999988877764 2345679999999999999999999998 5555554433221
Q ss_pred ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--------------------CEEE
Q 002068 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------------ELRC 387 (973)
Q Consensus 328 ~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------------~i~i 387 (973)
..+ .+...+.. ...+.||||||+|.+.+ +..+.|..++++. .+.+
T Consensus 68 ~~~----~l~~~l~~---~~~~~vl~iDEi~~l~~--------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 68 KPG----DLAAILTN---LEEGDVLFIDEIHRLSP--------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred Cch----hHHHHHHh---cccCCEEEEehHhhhCH--------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 112 12223322 23467999999999973 2344555554322 3678
Q ss_pred EEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|++||... .+++++++||. .+.+..|+.++..++++..... .++.++++++..+++.+.++ |..
T Consensus 133 i~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~------pR~ 197 (305)
T TIGR00635 133 VGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGT------PRI 197 (305)
T ss_pred EEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCC------cch
Confidence 88888875 58899999996 5799999999999999877763 57889999999999998754 456
Q ss_pred HHHHHHHHHhh
Q 002068 467 AIDLVDEAAAK 477 (973)
Q Consensus 467 a~~lld~a~~~ 477 (973)
+..+++.+...
T Consensus 198 ~~~ll~~~~~~ 208 (305)
T TIGR00635 198 ANRLLRRVRDF 208 (305)
T ss_pred HHHHHHHHHHH
Confidence 77777766544
No 132
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.67 E-value=3.9e-16 Score=177.99 Aligned_cols=218 Identities=21% Similarity=0.310 Sum_probs=174.3
Q ss_pred ccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCC
Q 002068 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP 731 (973)
Q Consensus 652 ~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~ 731 (973)
++.+..+..+.+.+++..... .++++.|+|||||-.+|++|++..- ...||+.+||..+.+....+.|||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~-------~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD-------LPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC-------CCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 577777777777776654211 1599999999999999999999987 78999999999999999999999987
Q ss_pred CC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccC
Q 002068 732 PG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD 810 (973)
Q Consensus 732 ~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~ 810 (973)
+| +.|....+ -.+.+..++++.+|+|||..++-..|..||++|++|.++--.|.+ .-.++.||.+|+.+...+++
T Consensus 388 ~GafTga~~kG-~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~-- 463 (606)
T COG3284 388 AGAFTGARRKG-YKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE-- 463 (606)
T ss_pred ccccccchhcc-ccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH--
Confidence 76 44433322 246777899999999999999999999999999999998777766 45578899999998877766
Q ss_pred CCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCH-HHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHH
Q 002068 811 DETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDR-DQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQL 888 (973)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~-~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~ 888 (973)
...|+.+|++|+. ..|.+||+.. .+....+.+++.+. ....+.++++++..
T Consensus 464 ---------------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~------~~~~~~l~~~~~~~ 516 (606)
T COG3284 464 ---------------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRE------NDWRLQLDDDALAR 516 (606)
T ss_pred ---------------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHc------cCCCccCCHHHHHH
Confidence 3459999999995 4789999873 34444444444331 22458899999999
Q ss_pred HHhcCCCCCCCccHHHHHHHHH
Q 002068 889 LGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 889 L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
|..+.|++| .|+|.++|+.+
T Consensus 517 l~~~~WPGN--irel~~v~~~~ 536 (606)
T COG3284 517 LLAYRWPGN--IRELDNVIERL 536 (606)
T ss_pred HHhCCCCCc--HHHHHHHHHHH
Confidence 999999988 79999998874
No 133
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.8e-15 Score=150.42 Aligned_cols=165 Identities=27% Similarity=0.456 Sum_probs=121.4
Q ss_pred ccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
...+-|.+-.++.+.+++... ..|+..|+ .+|++||||||||+||+++|+.. ...|+++..++|.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidppr----gvllygppg~gktml~kava~~t---~a~firvvgsefv 226 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 226 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH
Confidence 355667766667776666321 12444333 59999999999999999999877 6789999999986
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
.+ ++|..|..+ +..+...+++.++|+||||||.+. .++|..|+.++..-.--|
T Consensus 227 qk-----ylgegprmv-----rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd------ 290 (408)
T KOG0727|consen 227 QK-----YLGEGPRMV-----RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD------ 290 (408)
T ss_pred HH-----HhccCcHHH-----HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC------
Confidence 54 466655443 466778888889999999999643 678888888886421111
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
...|+-+||+||. .+.++|+|+ +|+|..|.|+-+++.+.+-++.-..
T Consensus 291 q~~nvkvimatnr------------------------------adtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 291 QTTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cccceEEEEecCc------------------------------ccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 1248889999998 344677777 8999999999999888776665443
No 134
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=1.9e-15 Score=171.86 Aligned_cols=198 Identities=25% Similarity=0.390 Sum_probs=143.1
Q ss_pred CCCCCCCchHHHHHHHHHhcc-------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~-------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.++++.|.++.++++.+.+.. ..+.++||+||||||||++|++++..+ +.+++.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~~ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecch
Confidence 566789999988888876521 235679999999999999999999987 677888876
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhh-------cCCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML-------GRGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l-------~~g~i~iI~ 389 (973)
+.+. ..+.|+....++.+|..+.. ..++||||||+|.+...+... +....+..+..++ ..+++.+|+
T Consensus 190 ~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ 266 (364)
T TIGR01242 190 SELV--RKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIA 266 (364)
T ss_pred HHHH--HHhhhHHHHHHHHHHHHHHh-cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 6655 34678878888888887764 357899999999997544322 2233333333333 246899999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|||..+ .+|+++.+ ||+ .|.|+.|+.+++.+||+..........+ ..+..++..+.+| .+..
T Consensus 267 ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-----~~~~~la~~t~g~-----sg~d 331 (364)
T TIGR01242 267 ATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-----VDLEAIAKMTEGA-----SGAD 331 (364)
T ss_pred ecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----CCHHHHHHHcCCC-----CHHH
Confidence 999886 58999997 897 6899999999999999877654322111 2356677777655 3445
Q ss_pred HHHHHHHHHhhh
Q 002068 467 AIDLVDEAAAKL 478 (973)
Q Consensus 467 a~~lld~a~~~~ 478 (973)
...++.+|...+
T Consensus 332 l~~l~~~A~~~a 343 (364)
T TIGR01242 332 LKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHH
Confidence 666777666554
No 135
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.6e-15 Score=172.11 Aligned_cols=201 Identities=18% Similarity=0.308 Sum_probs=133.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh-
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS- 725 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~- 725 (973)
-+.+|+||+.++..|...+...+ ....+||+||+|||||++|+++|+.+.+...+- ...|..+..-..+.
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r--------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK--------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECTSCLEITK 86 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCcHHHHHHc
Confidence 35789999999999988877422 112489999999999999999999996532110 11122111100000
Q ss_pred ----hhcC-CCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 726 ----RLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 726 ----~l~G-~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
.++- ......|.++...+.+.+. ...+.|+||||+|+++.+.++.||..||+ ...+++||
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~~viFI 155 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPAHIVFI 155 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCCceEEE
Confidence 0000 0001112222222333333 23567999999999999999999999986 33578888
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRK 876 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~ 876 (973)
++|+. ...+.+.+++|| ..+.|.+++.+++.+.+...+.. .
T Consensus 156 LaTte------------------------------~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~-------E- 196 (484)
T PRK14956 156 LATTE------------------------------FHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKI-------E- 196 (484)
T ss_pred eecCC------------------------------hhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHH-------c-
Confidence 88876 234678899999 78999999999988887776642 3
Q ss_pred CceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 877 MKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 877 ~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.+.++++++..|++.+ +.+.|..-+.+++.
T Consensus 197 -gi~~e~eAL~~Ia~~S---~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 197 -NVQYDQEGLFWIAKKG---DGSVRDMLSFMEQA 226 (484)
T ss_pred -CCCCCHHHHHHHHHHc---CChHHHHHHHHHHH
Confidence 3678999999999863 23366665666553
No 136
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.65 E-value=3.9e-13 Score=161.09 Aligned_cols=149 Identities=28% Similarity=0.411 Sum_probs=115.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC----CCCcccccccchhhHHHHhCCCeEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA----PPGYVGYEEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~----~~g~~g~~~~~~l~~~~~~~~~~Vl~ 756 (973)
++|+.||+.+|||++...+|+.. +..|++||-.+.. +....+|. ..|...+.+ |.+.+++++.- .|+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHT---dlqeYiGTyvTdd~G~lsFkE-GvLVeAlR~Gy--WIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHT---DLQEYIGTYVTDDDGSLSFKE-GVLVEALRRGY--WIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccc---hHHHHhhceeecCCCceeeeh-hHHHHHHhcCc--EEE
Confidence 59999999999999999999999 7889999988763 34556664 233333444 57788888766 899
Q ss_pred EccccccCHHHHHHHHHhhcCC-eEecCCCcEE--eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHh
Q 002068 757 FDEIEKAHSDVFNVFLQILDDG-RVTDSQGRTV--SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g-~~~~~~g~~v--~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (973)
|||..-++.+|+.+|.+++|+. .+-.+..+.+ ..+++.+.+|-|+.. -+++ ++
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg----~YgG--------------------RK 1016 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG----GYGG--------------------RK 1016 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc----cccc--------------------hH
Confidence 9999999999999999999865 4666665544 446889999999732 1112 45
Q ss_pred ccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 834 IFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 834 ~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
.++.+|.+|| .-+.|.....+++..|+..
T Consensus 1017 ~LSrAFRNRF-lE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 1017 GLSRAFRNRF-LEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred HHHHHHHhhh-HhhhcccCcHHHHHHHHhc
Confidence 5677899999 6789999999999999874
No 137
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.65 E-value=1.8e-15 Score=156.80 Aligned_cols=245 Identities=22% Similarity=0.388 Sum_probs=165.5
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc--ceEEe--c
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRI--D 714 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~--~~~~i--~ 714 (973)
++..|+..+...++||.-+++.|.++++..... ..|++|+ .+-|+|+|||||..+++.||+.++..+. +++.. .
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-~~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-CCCCCCe-EEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 356788889999999999999999999877654 4489998 7889999999999999999999975432 22211 0
Q ss_pred cccccchhhhhhhcCCCCCccc-ccc--cchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 715 MSEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 715 ~~~~~~~~~~~~l~G~~~g~~g-~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
-..+.+ +.++. |.+ ...+.+-++.++.++++|||+||+++.+++.|-..+|.--.. ..++|.
T Consensus 150 t~hFP~-----------~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v----~gv~fr 214 (344)
T KOG2170|consen 150 TLHFPH-----------ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQV----SGVDFR 214 (344)
T ss_pred hccCCC-----------hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccccc----cccccc
Confidence 011111 11111 111 134556667899999999999999999999999999863322 236899
Q ss_pred CEEEEEecCCChhhhhccCC----CCCCccc-hHHHHHHHHHHHHH----hccC-hhh--hcccceEEEcCCCCHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDD----ETFPKET-AYETIKQRVMDAAR----SIFR-PEF--MNRVDEYIVFQPLDRDQISS 859 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~----~~~~~~~-~~~~~~~~~~~~l~----~~f~-p~l--l~R~d~~i~f~~l~~~~l~~ 859 (973)
++|||+-||.|.++|.+... .....+. ....+...+..... ..+. ..+ .+++|.+|+|.|++..++..
T Consensus 215 kaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~ 294 (344)
T KOG2170|consen 215 KAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRS 294 (344)
T ss_pred ceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHH
Confidence 99999999999987765321 1111111 12222222221111 1121 112 27889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc-CC-C---CCCCccHHHHHHHH
Q 002068 860 IVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL-GY-D---PNYGARPVKRVIQQ 909 (973)
Q Consensus 860 I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~-~~-~---~~~gaR~L~r~i~~ 909 (973)
+++..+.. +| +..+.+.++-+++. .| + ..|...++|++..+
T Consensus 295 C~r~el~~-------rg--~~~d~~~~erva~~l~ffp~~~k~Fs~sGCK~V~ak 340 (344)
T KOG2170|consen 295 CIRAELRK-------RG--LAPDQDFVERVANSLSFFPESSKLFSSSGCKRVDAK 340 (344)
T ss_pred HHHHHHHh-------cc--cccchHHHHHHHHhhcccccccceeecccchhhhhh
Confidence 99988854 44 66788888777763 22 2 24667777776554
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.1e-15 Score=176.45 Aligned_cols=204 Identities=19% Similarity=0.188 Sum_probs=153.0
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.-|..+|||.+|+++|||+..++.+...+..+...| +||+||+|+|||++|+.+|+.+.+...+..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 357899999999999999999999999887766665 789999999999999999999965322110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
..+..++.++... ..+ -+.++.+.+.+.. .++..|++|||+|.|. ..++|.|+..++.
T Consensus 84 ~~~~~dv~~idgas------~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp 147 (563)
T PRK06647 84 NDNSLDVIEIDGAS------NTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPP 147 (563)
T ss_pred cCCCCCeEEecCcc------cCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCC
Confidence 1122344443221 011 2234455544432 2456699999999997 4567888888885
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
..+.+|++|+... .+.+++++||+.+.|..++.++..++++.++.. .++.++++++..++..+.+
T Consensus 148 ~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~G------ 212 (563)
T PRK06647 148 PYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTG------ 212 (563)
T ss_pred CCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5788888887653 467899999999999999999998888877764 6888999999999998863
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
-+..+..+++.+++.
T Consensus 213 dlR~alslLdklis~ 227 (563)
T PRK06647 213 SVRDAYTLFDQVVSF 227 (563)
T ss_pred CHHHHHHHHHHHHhh
Confidence 345788888887654
No 139
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=167.49 Aligned_cols=197 Identities=22% Similarity=0.338 Sum_probs=140.4
Q ss_pred hccccccchHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
-+++|.|.+++++.|.+.+...+ .|.. -|. .+||+||||||||.|||++|-+. +-||++...++|.
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK---LPK-GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK---LPK-GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFD 374 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCc---CCC-ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchh
Confidence 36889999999988888775432 2333 344 59999999999999999999887 8999999999986
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
+. ++| +|....+.++.+++...+|||||||||... ...+|+||--||.=.
T Consensus 375 Em-----~VG-----vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~--------- 435 (752)
T KOG0734|consen 375 EM-----FVG-----VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK--------- 435 (752)
T ss_pred hh-----hhc-----ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC---------
Confidence 54 122 234445678888888899999999999765 236788888887411
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
....+|||.+||. .+ .++++|. +|||..|.++.++-.-..+|+..++.
T Consensus 436 qNeGiIvigATNf------------------pe------------~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 436 QNEGIIVIGATNF------------------PE------------ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred cCCceEEEeccCC------------------hh------------hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 1125789999998 11 2233343 89999999999999999999999995
Q ss_pred HHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 867 RVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 867 ~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+ +.+++++--.+...+ .+.|..-.|.+.+..+-
T Consensus 486 k-----------i~~~~~VD~~iiARG-T~GFsGAdLaNlVNqAA 518 (752)
T KOG0734|consen 486 K-----------IPLDEDVDPKIIARG-TPGFSGADLANLVNQAA 518 (752)
T ss_pred c-----------CCcccCCCHhHhccC-CCCCchHHHHHHHHHHH
Confidence 4 223333322223324 44565667777777643
No 140
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.6e-16 Score=176.88 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=146.7
Q ss_pred CCCCCCCCchH---HHHHHHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 252 GKLDPVIGRDD---EIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 252 ~~l~~iiG~~~---~i~~li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
-+|.++-|.++ ++..+++.|+. +-+.+++|+||||||||.||+++|.+. +.+++++..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 37889999886 45555555543 446789999999999999999999987 889999988
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhh---HHHHHhhhhc----CCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMD---AGNLLKPMLG----RGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~---~~~~L~~~l~----~g~i~iI~ 389 (973)
++++ ..++|-...+++++|.++++. .|||+||||||.+...+... |... ..|-|+..++ +..|.+|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk~-aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhcc-CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 8887 457788888999999999875 57999999999998665322 2222 3344444443 33699999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
+||+++ -+||+|.| ||+ .|.++.|+...|.+|++-..+.......+ + +..+++.+.+|... .
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V--d---l~~iAr~tpGfsGA-----d 358 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV--D---LKKIARGTPGFSGA-----D 358 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC--C---HHHHhhhCCCcccc-----h
Confidence 999998 59999999 998 79999999999999998555532222122 2 33367777766543 5
Q ss_pred HHHHHHHHHhh
Q 002068 467 AIDLVDEAAAK 477 (973)
Q Consensus 467 a~~lld~a~~~ 477 (973)
...++.+|.-.
T Consensus 359 L~nl~NEAal~ 369 (596)
T COG0465 359 LANLLNEAALL 369 (596)
T ss_pred HhhhHHHHHHH
Confidence 56677666543
No 141
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=1.3e-15 Score=189.83 Aligned_cols=179 Identities=14% Similarity=0.134 Sum_probs=129.7
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc--------------------------
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK-------------------------- 327 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~-------------------------- 327 (973)
..+.++||+||||||||.||+++|... +.+++.+.+++++.+..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456789999999999999999999997 89999999888874310
Q ss_pred -------------ccchHH--HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc-------CCCE
Q 002068 328 -------------YRGEFE--DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------RGEL 385 (973)
Q Consensus 328 -------------~~g~~e--~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~g~i 385 (973)
+.+..+ .+++.+|+.|++. .||||||||||.+...... ....+.|...|+ ...|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~-SPCIIFIDEIDaL~~~ds~---~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAM-SPCIIWIPNIHDLNVNESN---YLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC-CCeEEEEEchhhcCCCccc---eehHHHHHHHhccccccCCCCCE
Confidence 011122 2378899999875 5899999999999754211 112344444443 2369
Q ss_pred EEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHH--HHHHHHHhcccccCC
Q 002068 386 RCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS--ALVEAAILSDRYISG 460 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~--~l~~l~~~s~~~i~~ 460 (973)
+||||||.++ .+||||+| ||+ .|.|+.|+..++.+++..+... .++.+.+. .+..++..+.+|.+
T Consensus 1774 IVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~GfSG- 1843 (2281)
T CHL00206 1774 LVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGSNA- 1843 (2281)
T ss_pred EEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCCCH-
Confidence 9999999998 69999999 998 6899999998998888755431 23333322 35677888776643
Q ss_pred CCCchHHHHHHHHHHhhhhh
Q 002068 461 RFLPDKAIDLVDEAAAKLKM 480 (973)
Q Consensus 461 r~~p~~a~~lld~a~~~~~~ 480 (973)
.+...++++|+..+..
T Consensus 1844 ----ADLanLvNEAaliAir 1859 (2281)
T CHL00206 1844 ----RDLVALTNEALSISIT 1859 (2281)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 4677788888766544
No 142
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=1.5e-15 Score=178.70 Aligned_cols=183 Identities=18% Similarity=0.272 Sum_probs=139.8
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccC----CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRR----TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~----~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+|+++|+|.+|++++|++..+.++...+... ..+++||+||||||||++|+++|+.+ +..++.+|.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielna 72 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNA 72 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEcc
Confidence 6899999999999999999888888776432 25678999999999999999999998 778899887
Q ss_pred ccccccccccchHHHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTES-----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~-----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
++... ...+..++..+... ..+.||+|||+|.+.+..+ ....+.|..+++.....+|+++|..
T Consensus 73 sd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~~aL~~~l~~~~~~iIli~n~~ 140 (482)
T PRK04195 73 SDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGARAILELIKKAKQPIILTANDP 140 (482)
T ss_pred ccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHHHHHHHHHHcCCCCEEEeccCc
Confidence 65431 11233444333321 1467999999999975321 2234556666766677777777765
Q ss_pred HHHhhhccCH-HHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 395 EYRKYIEKDP-ALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 395 ~~~~~~~~d~-al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
. ...+ .+++||..|.|+.|+.+++..+|+.++.. .++.++++++..++..+.+.
T Consensus 141 ~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 141 Y-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGD 195 (482)
T ss_pred c-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 3 4555 78899999999999999999999888874 68889999999999988643
No 143
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-16 Score=163.44 Aligned_cols=174 Identities=25% Similarity=0.389 Sum_probs=136.6
Q ss_pred HhcCCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEE
Q 002068 249 ASAGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 315 (973)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 315 (973)
+...++.++-|.+..|+.+-+.+ .-+.+.+++|||+||||||.||+++|+.- ...|+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFl 248 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFL 248 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhh
Confidence 33445667778888777777653 33567789999999999999999999875 77888
Q ss_pred EEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCC---CCchhhHHHHHhhhh-------cCCCE
Q 002068 316 SLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA---TNGAMDAGNLLKPML-------GRGEL 385 (973)
Q Consensus 316 ~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~---~~~~~~~~~~L~~~l-------~~g~i 385 (973)
++-.+.++ .+|.|+....++++|.-+... .|+|+||||||.+-..+- ++|..+++..++.++ .+|++
T Consensus 249 RvvGseLi--QkylGdGpklvRqlF~vA~e~-apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDv 325 (440)
T KOG0726|consen 249 RVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325 (440)
T ss_pred hhhhHHHH--HHHhccchHHHHHHHHHHHhc-CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCe
Confidence 88788887 468999999999999988764 589999999999875442 235566776666655 37899
Q ss_pred EEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCC
Q 002068 386 RCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGV 440 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v 440 (973)
.+|.|||..+ .+||+|.| |++ .|.|+.|+...+..|+.-...++.....|
T Consensus 326 KvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dV 378 (440)
T KOG0726|consen 326 KVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDV 378 (440)
T ss_pred EEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccc
Confidence 9999999998 79999999 998 79999999999998886544443333333
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.64 E-value=7.4e-16 Score=160.15 Aligned_cols=176 Identities=21% Similarity=0.347 Sum_probs=124.7
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc---ceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---ALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~---~~~~i~~~~~~~~~~~ 724 (973)
+.++.||+.++..|.+++.. +. - .++|||||||||||+.|+++|+++++.+. .++..+.+......
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~~------l--p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-- 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-RI------L--PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-- 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-cC------C--ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--
Confidence 46799999999999999885 21 1 27999999999999999999999987221 11222333221111
Q ss_pred hhhcCCCCCcccccccchhhHHH------HhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEe
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVV------RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~------~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 798 (973)
++.. .......+.... ...++.|++|||.|.+..+.|+.|++.||+ ...+++||+.
T Consensus 104 ---vvr~----Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s~~trFiLI 165 (346)
T KOG0989|consen 104 ---VVRE----KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-----------FSRTTRFILI 165 (346)
T ss_pred ---chhh----hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------cccceEEEEE
Confidence 0000 000000111111 023457999999999999999999999996 3357889999
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
+|- ..++.+.+.+|| ..+.|+++..+++...++....+ . .
T Consensus 166 cny------------------------------lsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~-------E--~ 205 (346)
T KOG0989|consen 166 CNY------------------------------LSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASK-------E--G 205 (346)
T ss_pred cCC------------------------------hhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHH-------h--C
Confidence 997 345677899999 78999999998888777765532 3 5
Q ss_pred eecCHHHHHHHHhc
Q 002068 879 MQVTDAAIQLLGSL 892 (973)
Q Consensus 879 l~~~~~a~~~L~~~ 892 (973)
+.++++++++|++.
T Consensus 206 v~~d~~al~~I~~~ 219 (346)
T KOG0989|consen 206 VDIDDDALKLIAKI 219 (346)
T ss_pred CCCCHHHHHHHHHH
Confidence 78999999999995
No 145
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=5.5e-15 Score=170.88 Aligned_cols=204 Identities=19% Similarity=0.186 Sum_probs=149.8
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
..|+++|||.+|+++||++..+..+...+..+...+ +||+||||+|||++|+.+|+.+.+......
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 358999999999999999999999999887665544 789999999999999999999965321100
Q ss_pred --cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-
Q 002068 309 --LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (973)
Q Consensus 309 --l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (973)
.....++.++... ..| -..++.+.+.+.. .+...|++|||+|.+. ...++.|+.+++.
T Consensus 85 ~~~~~~d~~~i~g~~------~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGAS------HRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------KEAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeeccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------HHHHHHHHHHhhcC
Confidence 0112344444221 122 1223333333322 2456799999999997 3467788888875
Q ss_pred -CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCC
Q 002068 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (973)
Q Consensus 383 -g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r 461 (973)
+.+.+|++|+... .+.+++++||..+.|..++.++....+..++++ .++.++++++..++..+.+-
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gd---- 215 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGS---- 215 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 5788888887653 577999999999999999999988888777663 68889999999999998643
Q ss_pred CCchHHHHHHHHHHhh
Q 002068 462 FLPDKAIDLVDEAAAK 477 (973)
Q Consensus 462 ~~p~~a~~lld~a~~~ 477 (973)
...+..+++..+..
T Consensus 216 --lr~a~~~Lekl~~~ 229 (451)
T PRK06305 216 --LRDAESLYDYVVGL 229 (451)
T ss_pred --HHHHHHHHHHHHHh
Confidence 34677777776543
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.8e-15 Score=171.63 Aligned_cols=204 Identities=22% Similarity=0.228 Sum_probs=151.0
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.+|.++|||..|++++|++..++.+...+..+...|. ||+||+|+|||++|+.+|+.+.+.+....
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 4789999999999999999999999999877666664 78999999999999999999864211110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 383 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g- 383 (973)
.....++.+|.++ ..| ...++.+.+.+.. .+...|++|||+|.+. .++.+.|+..++..
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~~a~naLLk~LEepp 147 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------KEAFNALLKTLEEPP 147 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0112355554422 122 1224444444433 2345799999999987 44667788888753
Q ss_pred -CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 384 -ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 384 -~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
.+++|.+|+... .+.+++.+||+.+.|.+|+.++....++.++.. .++.++++++..++..+.+-
T Consensus 148 ~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~----- 213 (486)
T PRK14953 148 PRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG----- 213 (486)
T ss_pred CCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 677777776543 466899999999999999999999988888774 57889999999999988632
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
...+..+++.++..
T Consensus 214 -lr~al~~Ldkl~~~ 227 (486)
T PRK14953 214 -MRDAASLLDQASTY 227 (486)
T ss_pred -HHHHHHHHHHHHHh
Confidence 45788888887654
No 147
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.3e-15 Score=174.89 Aligned_cols=199 Identities=19% Similarity=0.286 Sum_probs=132.3
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc------cccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS------EYME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~------~~~~ 720 (973)
-+++|+||+++++.|.+.+...+ .-..+||+||+|||||++|++|++.+++... .....|+ .+..
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR--------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR--------LHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQPCGVCRACREIDE 84 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCCCcccHHHHHHhc
Confidence 35789999999999988876321 1124799999999999999999999965321 1111222 2211
Q ss_pred hhhhhhhcC-CCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 721 KHAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 721 ~~~~~~l~G-~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
... ..++- ......|.++...+.+.+. ...+.|+||||+|+++...+|.||+.||+ ...+++|
T Consensus 85 G~h-~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~v~F 152 (830)
T PRK07003 85 GRF-VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPHVKF 152 (830)
T ss_pred CCC-ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCCeEE
Confidence 100 00000 0001112222222333322 24568999999999999999999999997 3457889
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++||. ...+.+.+++|| ..+.|.+++.+++.+.+...+.. .
T Consensus 153 ILaTtd------------------------------~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~-------E 194 (830)
T PRK07003 153 ILATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGE-------E 194 (830)
T ss_pred EEEECC------------------------------hhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHH-------c
Confidence 999986 334677899999 89999999999999988877643 2
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+.++++++..|++.+ ++ +.|...+.+.+
T Consensus 195 --gI~id~eAL~lIA~~A-~G--smRdALsLLdQ 223 (830)
T PRK07003 195 --RIAFEPQALRLLARAA-QG--SMRDALSLTDQ 223 (830)
T ss_pred --CCCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 3678999999998853 22 24544444443
No 148
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.64 E-value=6.6e-15 Score=166.36 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=145.3
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 323 (973)
.|.++|+|..|++++|++..++.+.+.+.....++++|+||||||||++|+++++.+.... .+.+++.++++.+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 5899999999999999999999999988777667899999999999999999999985321 12356677766543
Q ss_pred cccc-----------ccch-------HHHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhc
Q 002068 324 AGAK-----------YRGE-------FEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG 381 (973)
Q Consensus 324 ~g~~-----------~~g~-------~e~~l~~~~~~~~~~----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~ 381 (973)
.... +.+. ....++.++...... ....+|||||+|.+. .+.++.|..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~--------~~~~~~L~~~le 150 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR--------EDAQQALRRIME 150 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC--------HHHHHHHHHHHH
Confidence 1110 0000 112233333333221 234599999999886 334566777775
Q ss_pred C--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 382 R--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 382 ~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
. ...++|.+|+... .+.+.+.+|+..+.+.+|+.++...+++.++.+ .++.++++++..++..+.+-
T Consensus 151 ~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gd-- 219 (337)
T PRK12402 151 QYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGD-- 219 (337)
T ss_pred hccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC--
Confidence 2 3466777766543 466889999999999999999999998887764 67889999999999988532
Q ss_pred CCCCchHHHHHHHHHH
Q 002068 460 GRFLPDKAIDLVDEAA 475 (973)
Q Consensus 460 ~r~~p~~a~~lld~a~ 475 (973)
...++..++.++
T Consensus 220 ----lr~l~~~l~~~~ 231 (337)
T PRK12402 220 ----LRKAILTLQTAA 231 (337)
T ss_pred ----HHHHHHHHHHHH
Confidence 335556665544
No 149
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.64 E-value=9.1e-14 Score=166.28 Aligned_cols=153 Identities=25% Similarity=0.314 Sum_probs=111.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCC-Ccccc---cccchhhHHHHhCCCeEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP-GYVGY---EEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~-g~~g~---~~~~~l~~~~~~~~~~Vl~ 756 (973)
++||-|.||+|||++..++|+.. +..+++||.++- .+...|+|+.. +-.|- .....+..+++ .++.++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr--~G~WVl 1616 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR--DGGWVL 1616 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhh--cCCEEE
Confidence 38999999999999999999999 788999999987 45677888742 22110 00123334444 356999
Q ss_pred EccccccCHHHHHHHHHhhcCC-eEecCC-CcEEe-ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHh
Q 002068 757 FDEIEKAHSDVFNVFLQILDDG-RVTDSQ-GRTVS-FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g-~~~~~~-g~~v~-~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (973)
|||+.-++.+|+..|...+|.. +...+. ...++ .+|+.|.++-|+... .++ ++
T Consensus 1617 LDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q----ggG--------------------RK 1672 (4600)
T COG5271 1617 LDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ----GGG--------------------RK 1672 (4600)
T ss_pred eehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc----CCC--------------------cc
Confidence 9999999999999999999864 333333 33333 369999999998321 111 45
Q ss_pred ccChhhhcccceEEEcCCCCHHHHHHHHHHHHH
Q 002068 834 IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 834 ~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
.++..|++|| .+|....++.+++-.|+.....
T Consensus 1673 gLPkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1673 GLPKSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cCCHHHhhhh-heEEecccccchHHHHHHhhCC
Confidence 6788999999 6788899999999888775443
No 150
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3e-15 Score=171.47 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=149.6
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCc-----------c--
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ-----------A-- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~-----------~-- 308 (973)
.-|+++|||.+|+++||++..++.+...+..+..+| +||+||||||||++|+.+|+.+.+..... .
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 357999999999999999999998888887766665 88999999999999999999996532110 0
Q ss_pred ---------cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHH
Q 002068 309 ---------LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLL 376 (973)
Q Consensus 309 ---------l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L 376 (973)
..+..++.++.... .| .+.++.+.+.+.. .+...|+||||+|.+. ...++.|
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~------~~--id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~~~~~~L 147 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASN------NS--VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------IAAFNAF 147 (397)
T ss_pred CHHHHHHhcCCCCCeEeeccccc------CC--HHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------HHHHHHH
Confidence 01112344432111 11 2345555555532 2345699999999997 3456677
Q ss_pred hhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhc
Q 002068 377 KPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (973)
Q Consensus 377 ~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s 454 (973)
+..+++ +..++|++|+... .+.+++++|+..+.|.+++.++..+.++..+.. .++.++++++..++..+
T Consensus 148 Lk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 148 LKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Confidence 778875 4677777776543 466899999999999999999988888777763 58889999999999999
Q ss_pred ccccCCCCCchHHHHHHHHHHhhh
Q 002068 455 DRYISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 455 ~~~i~~r~~p~~a~~lld~a~~~~ 478 (973)
.+. +..+...++..+..+
T Consensus 219 ~g~------lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 219 QGS------MRDAQSILDQVIAFS 236 (397)
T ss_pred CCC------HHHHHHHHHHHHHhc
Confidence 743 446777887766553
No 151
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-15 Score=154.22 Aligned_cols=162 Identities=25% Similarity=0.403 Sum_probs=132.1
Q ss_pred CCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+..++-|..+.|+.+-++. .-.++.++|+|||||||||.+|+++|++- +.-|+.+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 4566777777777766653 23466789999999999999999999986 888999888
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhh-------cCCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML-------GRGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l-------~~g~i~iI~ 389 (973)
+.++ .+|+|+....++++|+.++.. ..||+|+|||+.+-+++-.. |..+++..++.++ .+|+|.+++
T Consensus 245 selv--qkyvgegarmvrelf~martk-kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMARTK-KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhccc-ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 8887 569999999999999988754 57999999999998776433 4456666665555 389999999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~ 432 (973)
|||.++ .+||+|.| |++ .|+|..|+.+-+-.|++-..+
T Consensus 322 atnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihak 362 (435)
T KOG0729|consen 322 ATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred ecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEecc
Confidence 999998 69999999 997 799999999999998865444
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.5e-15 Score=173.96 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=151.0
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCC---C-------c-----
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV---P-------Q----- 307 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~---p-------~----- 307 (973)
-|.++|||.+|+++|||+..++.+.+.+......| +||+||+||||||+|+.+|+.+.+... | .
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 47899999999999999999999988887655555 789999999999999999999966321 1 0
Q ss_pred -------ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHh
Q 002068 308 -------ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLK 377 (973)
Q Consensus 308 -------~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~ 377 (973)
...+..++.+|... ..| .+.++.+.+.+.. .+..-|++|||+|.+. ...+|.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s------~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAAS------NNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHHHH
Confidence 01122344443221 111 2345556555532 2345699999999997 34678888
Q ss_pred hhhcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 378 PMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 378 ~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
..++. +.+++|++|+... .+-+.+++|++.|.|..++.++....+..++.. .++.++++++..++..+.
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhC
Confidence 88986 4677888776542 566899999999999999999988888777763 588899999999999997
Q ss_pred cccCCCCCchHHHHHHHHHHhhh
Q 002068 456 RYISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 456 ~~i~~r~~p~~a~~lld~a~~~~ 478 (973)
+.+ ..+...++..+...
T Consensus 220 Gdl------r~al~eLeKL~~y~ 236 (620)
T PRK14954 220 GSM------RDAQSILDQVIAFS 236 (620)
T ss_pred CCH------HHHHHHHHHHHHhc
Confidence 443 46777787766654
No 153
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.63 E-value=4.5e-16 Score=157.28 Aligned_cols=186 Identities=22% Similarity=0.316 Sum_probs=88.0
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh-
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR- 726 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~- 726 (973)
+.+|+||+.+++++.-+.. |.+ ++||+||||||||++|+.++..+- ++-.-.+-+...-+++..
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~h-------~lLl~GppGtGKTmlA~~l~~lLP----~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GGH-------HLLLIGPPGTGKTMLARRLPSLLP----PLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC---------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc----CCC-------CeEEECCCCCCHHHHHHHHHHhCC----CCchHHHhhhccccccccC
Confidence 4689999998888755543 432 799999999999999999998882 222111111111111111
Q ss_pred -----hcCCCC-----C------cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEe
Q 002068 727 -----LIGAPP-----G------YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVS 789 (973)
Q Consensus 727 -----l~G~~~-----g------~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~ 789 (973)
++..+| . .+|-.. ...-+.+..++++||||||+-.+++.+++.|++.|++|+++..+ |..+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~ 145 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVT 145 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEE
Confidence 011100 0 011000 11245677889999999999999999999999999999988766 77777
Q ss_pred cc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHH
Q 002068 790 FT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQ 856 (973)
Q Consensus 790 ~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~ 856 (973)
|+ ++++|+|+|+..-... ......+.+-...+. ...++++-+|++|||..|.+++++.++
T Consensus 146 ~Pa~f~lv~a~NPcpCG~~------~~~~~~C~Cs~~~~~-~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 146 YPARFLLVAAMNPCPCGYY------GDPDNRCRCSPRQIR-RYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EB--EEEEEEE-S-------------------------------------------------------
T ss_pred EecccEEEEEecccccccc------ccccccccccccccc-cccccccccccccccccccccccccCC
Confidence 76 9999999999652211 111111222222222 235667888999999999999887654
No 154
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-15 Score=179.90 Aligned_cols=192 Identities=25% Similarity=0.377 Sum_probs=148.0
Q ss_pred CCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-.|+.+-|-+..+.++-++. .-.+++.+||+||||||||..|+++|..+.++. ....++.-+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhhc
Confidence 36777777777777766653 123466799999999999999999999986552 122233333
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc----CCCEEEEEcc
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG----RGELRCIGAT 391 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~----~g~i~iI~at 391 (973)
..+.. ++|+|+.|..++.+|++++.. .+.|+|+|||+-|.+.++.. -...+...|+.+|+ +|.+++||||
T Consensus 337 gaD~l--skwvgEaERqlrllFeeA~k~-qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCL--SKWVGEAERQLRLLFEEAQKT-QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred Cchhh--ccccCcHHHHHHHHHHHHhcc-CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 33333 569999999999999999875 68999999999998877543 23345566667664 8999999999
Q ss_pred CchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 392 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
|+++ .+||+++| ||+ .++|+.|+.+.+.+|+.-...++ .-.++...+..+++.+.+|.+.
T Consensus 414 nRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 414 NRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGGA 476 (1080)
T ss_pred CCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccchH
Confidence 9999 59999999 898 68999999999999997655543 3457788888899998888653
No 155
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=1.8e-14 Score=164.04 Aligned_cols=204 Identities=22% Similarity=0.264 Sum_probs=150.3
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.+|.++++|..|+++||++..++.+.+.+..+..+| +||+||||+|||++|+.+++.+.+.+.+..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 368999999999999999999999999887666554 689999999999999999999865432110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++.++.... .....++.+++.+... +++.|++|||+|.+. ....+.|+..++.
T Consensus 82 ~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVIEIDAASN--------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------KSAFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEEEeecccc--------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------HHHHHHHHHHHhCCc
Confidence 01223555543211 1122355666665432 345699999999986 3356667777764
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
..+.+|++|+... .+.+++++||..+.+++|+.++..++++..+.+ .++.++++++..++..+.+
T Consensus 146 ~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g------ 210 (355)
T TIGR02397 146 EHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADG------ 210 (355)
T ss_pred cceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4677778777654 466899999999999999999999988887764 5788999999999988853
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
.+..+.+.++.++..
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 355777777776654
No 156
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.61 E-value=1.1e-13 Score=166.01 Aligned_cols=202 Identities=22% Similarity=0.329 Sum_probs=135.0
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-------CCcceEEecccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEYM 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~~ 719 (973)
-+..++||+.++..+...+.. . .| .+++|+||||||||++|+++++.... .+.+|+.++|..+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~-----~---~~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS-----P---FP-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc-----C---CC-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 356799999999987655521 1 12 16999999999999999999987731 25679999998763
Q ss_pred ch-hh-hhhhcCCCCC--ccccc-------ccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCc--
Q 002068 720 EK-HA-VSRLIGAPPG--YVGYE-------EGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR-- 786 (973)
Q Consensus 720 ~~-~~-~~~l~G~~~g--~~g~~-------~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~-- 786 (973)
.. .. ...++|.... +.+.. -.....+.+....++||||||++.+++..|+.|+.+|+++++....+.
T Consensus 223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceec
Confidence 11 11 1233443211 10000 001112344566788999999999999999999999999875422110
Q ss_pred ----E-----------EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCC
Q 002068 787 ----T-----------VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 851 (973)
Q Consensus 787 ----~-----------v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~ 851 (973)
. ....++++|++|+... ..+.|+|.+||. .+.|+|
T Consensus 303 ~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~-----------------------------~~l~~aLrSR~~-~i~~~p 352 (615)
T TIGR02903 303 PDDPNVPKYIKKLFEEGAPADFVLIGATTRDP-----------------------------EEINPALRSRCA-EVFFEP 352 (615)
T ss_pred cCCcccchhhhhhcccCccceEEEEEeccccc-----------------------------cccCHHHHhcee-EEEeCC
Confidence 0 0112355665554421 125678999994 679999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCC
Q 002068 852 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDP 896 (973)
Q Consensus 852 l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~ 896 (973)
++.+++..|++..+.+ . .+.+++++++.|..+.|+.
T Consensus 353 ls~edi~~Il~~~a~~-------~--~v~ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 353 LTPEDIALIVLNAAEK-------I--NVHLAAGVEELIARYTIEG 388 (615)
T ss_pred CCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHCCCcH
Confidence 9999999999987653 2 2468999999999987743
No 157
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=4.5e-15 Score=171.91 Aligned_cols=186 Identities=20% Similarity=0.299 Sum_probs=127.1
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceEEeccccc----
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVRIDMSEY---- 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~~i~~~~~---- 718 (973)
-+++|+||+++++.|.+.+...+. -..+||+||+|||||++|++|++.+++.+. ....-.|+.+
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 357899999999999999875332 124799999999999999999999975211 0101112111
Q ss_pred --cchhhhhhhcC-CCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 719 --MEKHAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 719 --~~~~~~~~l~G-~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
.... ...++- ......|.++...+.+.+. ...+.|+||||+|+++...+|.||+.||+ ...
T Consensus 86 ~I~aG~-hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-----------PP~ 153 (700)
T PRK12323 86 EIDAGR-FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPE 153 (700)
T ss_pred HHHcCC-CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------CCC
Confidence 1100 001110 0001122222233334433 23468999999999999999999999997 335
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+++||++||. ...+.+.+++|| ..+.|.+++.+++.+.+...+..
T Consensus 154 ~v~FILaTte------------------------------p~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~---- 198 (700)
T PRK12323 154 HVKFILATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGE---- 198 (700)
T ss_pred CceEEEEeCC------------------------------hHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHH----
Confidence 7788888886 334667899999 88999999999998888877643
Q ss_pred HHhcCCceecCHHHHHHHHhc
Q 002068 872 IADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~ 892 (973)
. .+.+++++++.|++.
T Consensus 199 ---E--gi~~d~eAL~~IA~~ 214 (700)
T PRK12323 199 ---E--GIAHEVNALRLLAQA 214 (700)
T ss_pred ---c--CCCCCHHHHHHHHHH
Confidence 2 356888988888875
No 158
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=1.7e-14 Score=161.69 Aligned_cols=182 Identities=15% Similarity=0.264 Sum_probs=130.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
-+.+++||++.++.+...+...+.. +.+..+++|+||||||||++|+++|+.+ +..+..++...+...
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~----- 90 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP----- 90 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh-----
Confidence 3567999999999998888755432 2334479999999999999999999998 444544443322111
Q ss_pred hcCCCCCcccccccchhhHHHHh-CCCeEEEEccccccCHHHHHHHHHhhcCCeEec--CCC---cE--EeccCEEEEEe
Q 002068 727 LIGAPPGYVGYEEGGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD--SQG---RT--VSFTNTVIIMT 798 (973)
Q Consensus 727 l~G~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~--~~g---~~--v~~~~~iiI~t 798 (973)
+.+...+.. ..++||||||||.+++..++.|+..+++..+.. ..+ .. ...+.+.+|++
T Consensus 91 --------------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 91 --------------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred --------------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 122222332 356799999999999999999999998765321 111 11 22345677887
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
||. ...+.++|.+||+.++.|.+++.+++.+|+...+.. . .
T Consensus 157 t~~------------------------------~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------~--~ 197 (328)
T PRK00080 157 TTR------------------------------AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------L--G 197 (328)
T ss_pred cCC------------------------------cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------c--C
Confidence 776 223567899999889999999999999999976643 2 4
Q ss_pred eecCHHHHHHHHhcC
Q 002068 879 MQVTDAAIQLLGSLG 893 (973)
Q Consensus 879 l~~~~~a~~~L~~~~ 893 (973)
+.++++++++|++.+
T Consensus 198 ~~~~~~~~~~ia~~~ 212 (328)
T PRK00080 198 VEIDEEGALEIARRS 212 (328)
T ss_pred CCcCHHHHHHHHHHc
Confidence 678999999999863
No 159
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.61 E-value=3e-14 Score=170.82 Aligned_cols=214 Identities=21% Similarity=0.261 Sum_probs=148.2
Q ss_pred hhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 242 GKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 242 ~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
..++.+.+||.+|++++|++..+++++..+....+.+++|+|||||||||+|+.+++..........-.+.+++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 35788889999999999999999999988876777789999999999999999998876332111111256788888765
Q ss_pred ccccc-----cccchHH----HHHHHHHHH---------HHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC
Q 002068 322 LIAGA-----KYRGEFE----DRLKAVLKE---------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG 383 (973)
Q Consensus 322 ~~~g~-----~~~g~~e----~~l~~~~~~---------~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g 383 (973)
+.... ...|... ...+..+.. ......+++|||||++.|. ...++.|..+++.+
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------~~~Q~~Ll~~Le~~ 292 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------PLLQNKLLKVLEDK 292 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------HHHHHHHHHHHhhC
Confidence 42100 0011110 011111110 0001235699999999887 44555566665432
Q ss_pred ------------------------------CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHH
Q 002068 384 ------------------------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRER 433 (973)
Q Consensus 384 ------------------------------~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~ 433 (973)
.+++|++|+.... .++++|++||..+.+++++.++...|++..+.+
T Consensus 293 ~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 293 RVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred eEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3678888877653 678999999999999999999999999988774
Q ss_pred HhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhh
Q 002068 434 YELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 434 ~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~ 478 (973)
.++.++++++..+..++. .. .++++.|..++...
T Consensus 369 ----~~v~ls~eal~~L~~ys~---~g----Rraln~L~~~~~~~ 402 (615)
T TIGR02903 369 ----INVHLAAGVEELIARYTI---EG----RKAVNILADVYGYA 402 (615)
T ss_pred ----cCCCCCHHHHHHHHHCCC---cH----HHHHHHHHHHHHHH
Confidence 467789999998888763 22 37777777766443
No 160
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.61 E-value=1.7e-14 Score=160.46 Aligned_cols=180 Identities=16% Similarity=0.263 Sum_probs=127.6
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+.+++||++.++.|...+...... + .+..+++|+||||||||++|+++|+.+ +.++..++++.....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~---~-~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~------ 69 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMR---Q-EALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKP------ 69 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhc---C-CCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCc------
Confidence 467999999999998888654322 1 222379999999999999999999988 334444433322110
Q ss_pred cCCCCCcccccccchhhHHHH-hCCCeEEEEccccccCHHHHHHHHHhhcCCeEec--CCC-----cEEeccCEEEEEec
Q 002068 728 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD--SQG-----RTVSFTNTVIIMTS 799 (973)
Q Consensus 728 ~G~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~--~~g-----~~v~~~~~iiI~ts 799 (973)
+.+.+.+. ...+.|||||||+.+++..++.|+.+++++.... ..+ .....+.+++|.+|
T Consensus 70 -------------~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 70 -------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred -------------hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 12222332 2345699999999999999999999998765321 111 12233456777777
Q ss_pred CCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCce
Q 002068 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKM 879 (973)
Q Consensus 800 N~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l 879 (973)
|. ...+.+++.+||..++.|.+++.+++.+++...+.. . .+
T Consensus 137 ~~------------------------------~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------~--~~ 177 (305)
T TIGR00635 137 TR------------------------------AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------L--NV 177 (305)
T ss_pred CC------------------------------ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------h--CC
Confidence 76 123567899999888999999999999999876642 2 46
Q ss_pred ecCHHHHHHHHhc
Q 002068 880 QVTDAAIQLLGSL 892 (973)
Q Consensus 880 ~~~~~a~~~L~~~ 892 (973)
.++++++++|++.
T Consensus 178 ~~~~~al~~ia~~ 190 (305)
T TIGR00635 178 EIEPEAALEIARR 190 (305)
T ss_pred CcCHHHHHHHHHH
Confidence 7999999999986
No 161
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.60 E-value=1.3e-14 Score=165.43 Aligned_cols=204 Identities=24% Similarity=0.361 Sum_probs=137.3
Q ss_pred hhccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
..+..+.|.++.++.|...+... ..|...| . ++||+||||||||++|+++|+.+ +.+|+.+++++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p---~-gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~ 200 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP---K-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE 200 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC---C-ceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHH
Confidence 34678899999999999887542 1222322 2 69999999999999999999998 67899999887
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHhhcCCeEecCCCc
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
+... .+|..... ...++...+...++||||||||.+ +++++..+++++..-.-..
T Consensus 201 l~~~-----~~g~~~~~-----i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~---- 266 (389)
T PRK03992 201 LVQK-----FIGEGARL-----VRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD---- 266 (389)
T ss_pred HhHh-----hccchHHH-----HHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC----
Confidence 6432 23322111 124455556667799999999987 3566777777764311000
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...+++||+|||. ...++++++ +|||..|.|++|+.++..+|++.+
T Consensus 267 --~~~~v~VI~aTn~------------------------------~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~ 314 (389)
T PRK03992 267 --PRGNVKIIAATNR------------------------------IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIH 314 (389)
T ss_pred --CCCCEEEEEecCC------------------------------hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHH
Confidence 1246789999997 223566776 599999999999999999999876
Q ss_pred HHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENE 914 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~ 914 (973)
+.. ..+.-.++ +..|+.. ...|..+.++.++..+...+
T Consensus 315 ~~~-------~~~~~~~~---~~~la~~--t~g~sgadl~~l~~eA~~~a 352 (389)
T PRK03992 315 TRK-------MNLADDVD---LEELAEL--TEGASGADLKAICTEAGMFA 352 (389)
T ss_pred hcc-------CCCCCcCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 632 11111122 3445553 34566677777776654433
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2e-14 Score=171.47 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=154.8
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCC---------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--------------- 306 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p--------------- 306 (973)
..++++|||.+|+++||++..++.+...+..+...| +||+||+|+|||++|+.+|+.+.+....
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 457899999999999999999999999987776666 6899999999999999999998643211
Q ss_pred cccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-
Q 002068 307 QALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (973)
Q Consensus 307 ~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (973)
....+..++.+|..+.. ....++.+++.+.. .++.-|++|||+|.|. .+.++.|+.+++.
T Consensus 85 ~~~~~~n~~~ld~~~~~--------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEep 148 (614)
T PRK14971 85 NEQRSYNIHELDAASNN--------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEP 148 (614)
T ss_pred hcCCCCceEEecccccC--------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCC
Confidence 01112345555543211 12345666665543 2345699999999997 4578889999985
Q ss_pred -CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCC
Q 002068 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (973)
Q Consensus 383 -g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r 461 (973)
...++|++|+... .+-+++++||..+.|..++.++....++.++.+ .++.++++++..++..+.+-
T Consensus 149 p~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gd---- 215 (614)
T PRK14971 149 PSYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGG---- 215 (614)
T ss_pred CCCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 5688888887553 577999999999999999999998888877774 68999999999999998643
Q ss_pred CCchHHHHHHHHHHhh
Q 002068 462 FLPDKAIDLVDEAAAK 477 (973)
Q Consensus 462 ~~p~~a~~lld~a~~~ 477 (973)
...+...++..+..
T Consensus 216 --lr~al~~Lekl~~y 229 (614)
T PRK14971 216 --MRDALSIFDQVVSF 229 (614)
T ss_pred --HHHHHHHHHHHHHh
Confidence 34677777776654
No 163
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-14 Score=172.65 Aligned_cols=199 Identities=19% Similarity=0.303 Sum_probs=131.1
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceEE-eccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~~-i~~~~~~~~ 721 (973)
-+.+|+||+.++..|.+++...+. ...+||+||+|||||++|+++|+.+++... ++.. -.|..+.+.
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g 85 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQG 85 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcC
Confidence 357899999999999888874321 123699999999999999999999965311 1110 011111110
Q ss_pred hh--hhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 722 HA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 722 ~~--~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
.. +..+-+ ....+....+.+.+.+. ...+.|+||||+|+++.+.++.||+.||+ ...+++|
T Consensus 86 ~~~DviEidA--as~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~vrF 152 (944)
T PRK14949 86 RFVDLIEVDA--ASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHVKF 152 (944)
T ss_pred CCceEEEecc--ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCeEE
Confidence 00 000101 00122222233333333 34568999999999999999999999997 2346777
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++|+. ...+.+.+++|| .++.|++++.+++...+...+.. .
T Consensus 153 ILaTTe------------------------------~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-------E 194 (944)
T PRK14949 153 LLATTD------------------------------PQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-------E 194 (944)
T ss_pred EEECCC------------------------------chhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-------c
Confidence 777665 123567889999 88999999999999988877643 2
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+.+++++++.|+..+ +.+.|...+.+.+
T Consensus 195 --gI~~edeAL~lIA~~S---~Gd~R~ALnLLdQ 223 (944)
T PRK14949 195 --QLPFEAEALTLLAKAA---NGSMRDALSLTDQ 223 (944)
T ss_pred --CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 3678999999999863 2235555444443
No 164
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2e-14 Score=171.45 Aligned_cols=201 Identities=19% Similarity=0.187 Sum_probs=150.6
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCc-----c--------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ-----A-------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~-----~-------- 308 (973)
.+|.++|||..|++++|++..+..+...+..+. .+++||+||+|+|||++|+.+|+.+.+..... .
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 478999999999999999999999888876654 46789999999999999999999996532110 0
Q ss_pred ---cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC
Q 002068 309 ---LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 382 (973)
Q Consensus 309 ---l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 382 (973)
..+..++.++.. .+...+.++++++.+... +...|+||||+|.|. .+.+|.|+..++.
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEe 147 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEE 147 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhc
Confidence 011234444322 112234567777666532 345699999999997 4577888888885
Q ss_pred --CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 383 --GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 383 --g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
+.+++|++|+... .+-+.+++||+.+.|..++.++....+..+..+ .++.++++++..++..+.+.
T Consensus 148 Pp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~--- 215 (620)
T PRK14948 148 PPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGG--- 215 (620)
T ss_pred CCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC---
Confidence 5788888887654 466899999999999999999888877777663 57889999999999998643
Q ss_pred CCCchHHHHHHHHH
Q 002068 461 RFLPDKAIDLVDEA 474 (973)
Q Consensus 461 r~~p~~a~~lld~a 474 (973)
+..++.+++..
T Consensus 216 ---lr~A~~lLekl 226 (620)
T PRK14948 216 ---LRDAESLLDQL 226 (620)
T ss_pred ---HHHHHHHHHHH
Confidence 34677777754
No 165
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-14 Score=167.99 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=130.3
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceE-Eeccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~ 721 (973)
-+.+|+||+.+++.|.+++... +....+||+||+|||||++|+++|+.+.+... ++- .-+|..+...
T Consensus 13 tFddVIGQe~vv~~L~~aI~~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEG 84 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcC
Confidence 3578999999999998888732 21236899999999999999999999964221 100 0011111110
Q ss_pred h--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 722 H--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 722 ~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
. ++-.+-++ ...+..+.+.+.+.+. ...+.|+||||+|+++...++.|++.|++ ...++.|
T Consensus 85 ~hpDviEIDAA--s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~v~F 151 (702)
T PRK14960 85 RFIDLIEIDAA--SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEHVKF 151 (702)
T ss_pred CCCceEEeccc--ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCCcEE
Confidence 0 00000111 0112111122222222 23567999999999999999999999997 2245678
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++|+. ...+.+.+++|| ..+.|.+++.+++.+.+...+.+ .
T Consensus 152 ILaTtd------------------------------~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k-------E 193 (702)
T PRK14960 152 LFATTD------------------------------PQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEK-------E 193 (702)
T ss_pred EEEECC------------------------------hHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH-------c
Confidence 887765 122456788999 78999999999999988887743 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+.++++++.+|++.+ +.+.|...+.+.+
T Consensus 194 --gI~id~eAL~~IA~~S---~GdLRdALnLLDQ 222 (702)
T PRK14960 194 --QIAADQDAIWQIAESA---QGSLRDALSLTDQ 222 (702)
T ss_pred --CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 4679999999999863 2335665555544
No 166
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.8e-14 Score=161.73 Aligned_cols=204 Identities=21% Similarity=0.241 Sum_probs=147.9
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCC-CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccC--CCeEEEEEc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM--NRKLISLDM 319 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~-~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~--~~~~~~l~~ 319 (973)
..|.++|||.+|++++|++..++.+.+.+..+.. +++||+||||+|||++|+.+++.+.+...+.... +..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4689999999999999999999999998876554 4688999999999999999999986533221111 223343332
Q ss_pred ccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCch
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 394 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~ 394 (973)
.. . .....++.+++.+.. .++..|++|||+|.+.. ...+.|...++. ....+|++|+..
T Consensus 85 ~~------~--~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 85 AS------N--NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------AAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred cc------C--CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------HHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 11 1 112345566665543 23456999999998863 345666666764 356677777654
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a 474 (973)
. .+.+++.+||..+.+..|+.++...++...+.+ +++.++++++..++..+.+ -...+++.++..
T Consensus 149 ~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~g------dlr~~~~~lekl 213 (367)
T PRK14970 149 H-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADG------ALRDALSIFDRV 213 (367)
T ss_pred c-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 3 577999999999999999999988888877763 6889999999999998762 234677777766
Q ss_pred Hhh
Q 002068 475 AAK 477 (973)
Q Consensus 475 ~~~ 477 (973)
+..
T Consensus 214 ~~y 216 (367)
T PRK14970 214 VTF 216 (367)
T ss_pred HHh
Confidence 644
No 167
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=1.8e-14 Score=161.55 Aligned_cols=199 Identities=22% Similarity=0.312 Sum_probs=145.2
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~ 322 (973)
..|.++|||.+|++++|++..+..+...+.....++++|+||||||||++++.+++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 568999999999999999999999999887777778999999999999999999999844321 234555544321
Q ss_pred cccccccchHHHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchH
Q 002068 323 IAGAKYRGEFEDRLKAVLKEVTES-----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDE 395 (973)
Q Consensus 323 ~~g~~~~g~~e~~l~~~~~~~~~~-----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~ 395 (973)
. + ...+...+...... ....+++|||+|.+.. +..+.|..+++ .....+|.+++...
T Consensus 80 ~------~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------~~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 80 R------G--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------DAQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred c------c--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------HHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 1 1 01122222222211 2346999999999862 34556777776 34566777776553
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHH
Q 002068 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
.+.+++.+|+..+.|++++.++...+++..+.+ .++.++++++..++..+.+. +..+++.++.++
T Consensus 144 -----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~~ 208 (319)
T PRK00440 144 -----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGD------MRKAINALQAAA 208 (319)
T ss_pred -----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 456789999999999999999998888877763 58889999999999988643 446778887766
Q ss_pred hh
Q 002068 476 AK 477 (973)
Q Consensus 476 ~~ 477 (973)
..
T Consensus 209 ~~ 210 (319)
T PRK00440 209 AT 210 (319)
T ss_pred Hc
Confidence 53
No 168
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.60 E-value=5.2e-14 Score=152.25 Aligned_cols=168 Identities=25% Similarity=0.300 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcc
Q 002068 656 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV 735 (973)
Q Consensus 656 ~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~ 735 (973)
+.++.+.+.+..+.... .++||.||||||||++|+++|+.+ +.+++.++|..- ...+.++|...++.
T Consensus 5 ~~~~~l~~~~l~~l~~g-------~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~---~~~~dllg~~~~~~ 71 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSG-------YPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAE---LTTSDLVGSYAGYT 71 (262)
T ss_pred HHHHHHHHHHHHHHhcC-------CeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCcc---CCHHHHhhhhcccc
Confidence 44555555554433211 159999999999999999999977 789999999863 23345566533221
Q ss_pred cc--------------------cccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCC----cEE-ec
Q 002068 736 GY--------------------EEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG----RTV-SF 790 (973)
Q Consensus 736 g~--------------------~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g----~~v-~~ 790 (973)
.. ...+.+..++. .+++|+||||+++++++++.|+.+|++|.++...+ ..+ ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~ 149 (262)
T TIGR02640 72 RKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH 149 (262)
T ss_pred hhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC
Confidence 10 00123443333 35699999999999999999999999998876542 223 23
Q ss_pred cCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 791 ~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
+++.+|+|+|..... + ...++++|++|| ..+.+..++.++..+|+...
T Consensus 150 ~~frvIaTsN~~~~~-----g--------------------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 150 PEFRVIFTSNPVEYA-----G--------------------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred CCCEEEEeeCCcccc-----c--------------------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 588899999983210 0 122467899999 78899999999888888764
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=4e-13 Score=166.92 Aligned_cols=183 Identities=21% Similarity=0.286 Sum_probs=126.7
Q ss_pred CCCCCCchHHHHHHHHHhccC-------C--CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc
Q 002068 254 LDPVIGRDDEIRRCIQILSRR-------T--KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 324 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~~-------~--~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~ 324 (973)
...++|++..++.+...+.+. . ..++||+||||||||++|++|++.+... +.+++.+|++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhh
Confidence 456899999988888876431 1 1357999999999999999999988432 44688899877632
Q ss_pred cc----------cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCC----------
Q 002068 325 GA----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE---------- 384 (973)
Q Consensus 325 g~----------~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~---------- 384 (973)
.. .|.|.-+. ..+.+.....+..||||||++.+. .++++.|.++++.|.
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~--------~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAH--------PDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred hhhHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCC--------HHHHHHHHHHHhhCceecCCceEEe
Confidence 11 12232111 122333333456799999999886 678899999997652
Q ss_pred ---EEEEEccCch--HHH------------h------hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh----
Q 002068 385 ---LRCIGATTLD--EYR------------K------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---- 436 (973)
Q Consensus 385 ---i~iI~at~~~--~~~------------~------~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~---- 436 (973)
.++|+|||.. .+. . .-.+.|+|.+|++ .+.|.+++.++..+|++..+..+..
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2378888862 111 0 1124689999996 5677778999999998877765432
Q ss_pred -hcCCccCHHHHHHHHHhc
Q 002068 437 -HHGVRISDSALVEAAILS 454 (973)
Q Consensus 437 -~~~v~i~~~~l~~l~~~s 454 (973)
...+.++++++..++...
T Consensus 789 ~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 789 RGYEIHISDEALKLLSENG 807 (857)
T ss_pred CCCcCcCCHHHHHHHHHcC
Confidence 234578999999998754
No 170
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.1e-14 Score=170.35 Aligned_cols=198 Identities=19% Similarity=0.323 Sum_probs=132.0
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc------cc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~ 720 (973)
-+++|+||+.+++.|.+.+...+. ...+||+||+|||||++|+++|+.+++... .-.-.|+.+ ..
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKG-VSANPCNDCENCREIDE 84 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCC-CCcccCCCCHHHHHHhc
Confidence 357899999999999999874321 124899999999999999999999965321 111112211 11
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. ++..+-+ ....+.++...+.+.+. ..++.|+||||+|+++++.+|.|+..||+ ...+++
T Consensus 85 g~~~d~~eida--as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp~~~~ 151 (509)
T PRK14958 85 GRFPDLFEVDA--ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PPSHVK 151 (509)
T ss_pred CCCceEEEEcc--cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cCCCeE
Confidence 00 0001111 11222222223333332 24567999999999999999999999997 335777
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++|+. ...+.+.+++|| ..+.|.+++.+++.+.+...+..
T Consensus 152 fIlattd------------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~------- 193 (509)
T PRK14958 152 FILATTD------------------------------HHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKE------- 193 (509)
T ss_pred EEEEECC------------------------------hHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHH-------
Confidence 8887764 222455689999 78999999999998888777743
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.+++++++.|++.+ . .+.|...+.+++
T Consensus 194 e--gi~~~~~al~~ia~~s-~--GslR~al~lLdq 223 (509)
T PRK14958 194 E--NVEFENAALDLLARAA-N--GSVRDALSLLDQ 223 (509)
T ss_pred c--CCCCCHHHHHHHHHHc-C--CcHHHHHHHHHH
Confidence 3 3668999999998863 2 335665555554
No 171
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=1.9e-14 Score=178.10 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=132.7
Q ss_pred CCCCchHHHHHHHHHhcc------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-----
Q 002068 256 PVIGRDDEIRRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~----- 324 (973)
+++|+++..+++.+.+.. ....++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 488999988888875431 123468999999999999999999998 77888887654321
Q ss_pred --cccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-----------------CCE
Q 002068 325 --GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 385 (973)
Q Consensus 325 --g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------g~i 385 (973)
...|.|....++...+..+.. .+.|+||||||.+.+... .+..+.|..+++. +++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~--~~~villDEidk~~~~~~----~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKT--KNPLFLLDEIDKIGSSFR----GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCc--CCCEEEEechhhcCCccC----CCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 123566666666666665543 234889999999985322 1234455555532 468
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHH-HHHhhhc-----CCccCHHHHHHHHHhcccccC
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLR-ERYELHH-----GVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~-~~~~~~~-----~v~i~~~~l~~l~~~s~~~i~ 459 (973)
.+|+|||... .++++|++||..|.|+.|+.+++.+|++..+ .+....+ ++.++++++.++++...+-.+
T Consensus 465 ~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 465 IFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred EEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 8999999875 6899999999999999999999999997654 3322222 467999999998875443333
Q ss_pred CC
Q 002068 460 GR 461 (973)
Q Consensus 460 ~r 461 (973)
.|
T Consensus 540 ~R 541 (775)
T TIGR00763 540 VR 541 (775)
T ss_pred Ch
Confidence 34
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.58 E-value=1.8e-14 Score=139.05 Aligned_cols=121 Identities=30% Similarity=0.463 Sum_probs=97.1
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEcccc
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIH 358 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~ 358 (973)
+||+||||||||++|+.+|+.+ +.+++.++++.+. ..+.++.+..+..++..+.....++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 5899999999999999999998 8899999999887 347789999999999998765447999999999
Q ss_pred ccccCCCCC---chhhHHHHHhhhhc-----CCCEEEEEccCchHHHhhhccCHHHH-ccCc-eEEec
Q 002068 359 TVVGAGATN---GAMDAGNLLKPMLG-----RGELRCIGATTLDEYRKYIEKDPALE-RRFQ-QVYVD 416 (973)
Q Consensus 359 ~l~~~~~~~---~~~~~~~~L~~~l~-----~g~i~iI~at~~~~~~~~~~~d~al~-~Rf~-~i~~~ 416 (973)
.+.+..... ......+.|...++ .+++.+|++||..+ .+++++. +||+ .|.++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 999776222 22334455555554 24699999999976 7999999 9997 56664
No 173
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.58 E-value=3.4e-14 Score=161.08 Aligned_cols=203 Identities=24% Similarity=0.365 Sum_probs=133.9
Q ss_pred hccccccchHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-+..|.|.+..++.|.+.+.... .|... |. .+||+||||||||++|+++|+.+ +.+|+.+.++++
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~---pk-gvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l 215 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP---PR-GVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEF 215 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC---Cc-eEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHH
Confidence 46789999999999998885321 23332 23 69999999999999999999988 678888887765
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
.. ..+|..... ...++..++...++||||||||.+. ..++..+.+++..-.-.+
T Consensus 216 ~~-----k~~ge~~~~-----lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~----- 280 (398)
T PTZ00454 216 VQ-----KYLGEGPRM-----VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD----- 280 (398)
T ss_pred HH-----HhcchhHHH-----HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-----
Confidence 33 223332211 1245566667778999999999763 234445555443210000
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
...+++||+|||. ...++|+++ +|||..|.|++|+.++...|++.++
T Consensus 281 -~~~~v~VI~aTN~------------------------------~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 281 -QTTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred -CCCCEEEEEecCC------------------------------chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 1136789999997 234677777 4999999999999999999998776
Q ss_pred HHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 002068 866 DRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENE 914 (973)
Q Consensus 866 ~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~ 914 (973)
.+ .++.-.++ ++.|+.. ...|....++.++..+...+
T Consensus 330 ~~-------~~l~~dvd---~~~la~~--t~g~sgaDI~~l~~eA~~~A 366 (398)
T PTZ00454 330 SK-------MNLSEEVD---LEDFVSR--PEKISAADIAAICQEAGMQA 366 (398)
T ss_pred hc-------CCCCcccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 43 22222222 3344442 33455677777776655443
No 174
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.6e-14 Score=166.19 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=133.3
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceE-----Eeccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALV-----RIDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~-----~i~~~~~~~~ 721 (973)
-+++++||+.+++.|.+++... +...++||+||+|||||++|+++|+.+.+...+-. .-+|..+...
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence 3578999999999998877632 12236999999999999999999998854322110 0011111111
Q ss_pred hh--hhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 722 HA--VSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 722 ~~--~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
.. +-.+-+ .+..|.++...+.+.+.. +.+.|+||||+|.++.+.+|.|+..||+ ...+++|
T Consensus 83 ~~~Dv~eida--as~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~f 149 (491)
T PRK14964 83 NHPDVIEIDA--ASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVKF 149 (491)
T ss_pred CCCCEEEEec--ccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeEE
Confidence 00 001111 112232222333444432 3467999999999999999999999997 3356778
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++|+. ...+.+.+.+|+ ..+.|.+++.+++.+.+...+.+ .
T Consensus 150 Ilatte------------------------------~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~-------E 191 (491)
T PRK14964 150 ILATTE------------------------------VKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK-------E 191 (491)
T ss_pred EEEeCC------------------------------hHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHH-------c
Confidence 887764 122456788999 78999999999999888877743 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.+.++++++++|++.+ . .+.|.+.+.+++.
T Consensus 192 --gi~i~~eAL~lIa~~s-~--GslR~alslLdql 221 (491)
T PRK14964 192 --NIEHDEESLKLIAENS-S--GSMRNALFLLEQA 221 (491)
T ss_pred --CCCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 4678999999999864 2 3466665665553
No 175
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.7e-14 Score=163.81 Aligned_cols=185 Identities=21% Similarity=0.340 Sum_probs=137.8
Q ss_pred CCCCchHHHHHHHHHhcc-----CCC-CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-----c
Q 002068 256 PVIGRDDEIRRCIQILSR-----RTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----A 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~-----~~~-~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~-----~ 324 (973)
+=.|-++.-+|+++.|.- ..+ +-++|+||||||||+|++.+|+.+ +.+|+++.++.+. -
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 347888899999987732 222 234799999999999999999999 9999999987773 3
Q ss_pred ccc--ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc-----------------CCCE
Q 002068 325 GAK--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----------------RGEL 385 (973)
Q Consensus 325 g~~--~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~-----------------~g~i 385 (973)
|++ |.|.+..++-+-+..+... +-+++|||||.+..+-.+ |....|+.+|+ =.+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~--NPv~LLDEIDKm~ss~rG----DPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVK--NPVFLLDEIDKMGSSFRG----DPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccccCChHHHHHHHHhCCc--CCeEEeechhhccCCCCC----ChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 443 7888888877777776543 348899999999855333 23334555553 1378
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHH-HHHHHhhhcC-----CccCHHHHHHHHHhcccccC
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRG-LRERYELHHG-----VRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~-~~~~~~~~~~-----v~i~~~~l~~l~~~s~~~i~ 459 (973)
.+|+|+|.-+ .++.+|++|+..|.++-++.+|..+|.+. +..+.-..|+ +.|+++++..+++...|-.+
T Consensus 468 mFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 468 MFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred EEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 8999999876 69999999999999999999999999854 4454444444 56899999888776544333
Q ss_pred CC
Q 002068 460 GR 461 (973)
Q Consensus 460 ~r 461 (973)
-|
T Consensus 543 VR 544 (782)
T COG0466 543 VR 544 (782)
T ss_pred hh
Confidence 33
No 176
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.1e-13 Score=163.55 Aligned_cols=202 Identities=20% Similarity=0.213 Sum_probs=146.7
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCC-Ccc-------------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV-PQA------------- 308 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~-p~~------------- 308 (973)
.|.++|||.+|+++||++..++.+...+..+...| +||+||+|+|||++|+.+|+.+.+... +..
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 36899999999999999999999988887665555 589999999999999999999854221 100
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
..+..++.++.+.. .+ ...++.+++.+.. .....|+||||+|.|. .+..|.|+..++.
T Consensus 85 ~~~~~d~~~i~~~~~------~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~~a~naLLk~LEepp 148 (585)
T PRK14950 85 EGSAVDVIEMDAASH------TS--VDDAREIIERVQFRPALARYKVYIIDEVHMLS--------TAAFNALLKTLEEPP 148 (585)
T ss_pred cCCCCeEEEEecccc------CC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------HHHHHHHHHHHhcCC
Confidence 01223455543211 11 2234555554433 1345699999999997 3466778888875
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
..+++|++|+... .+.+.+++||+.+.|..++..+...+++.++.+ .++.++++++..++..+.+
T Consensus 149 ~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~G------ 213 (585)
T PRK14950 149 PHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATG------ 213 (585)
T ss_pred CCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4677777776543 356889999999999999999988888777763 6788999999999998863
Q ss_pred CchHHHHHHHHHHh
Q 002068 463 LPDKAIDLVDEAAA 476 (973)
Q Consensus 463 ~p~~a~~lld~a~~ 476 (973)
.+..+++.++..+.
T Consensus 214 dlr~al~~LekL~~ 227 (585)
T PRK14950 214 SMRDAENLLQQLAT 227 (585)
T ss_pred CHHHHHHHHHHHHH
Confidence 34577777776544
No 177
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3e-14 Score=168.47 Aligned_cols=184 Identities=22% Similarity=0.336 Sum_probs=125.6
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc------cc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~ 720 (973)
-+.+|+||+.++..|.+.+...+. ...+||+||+|||||++|+++|+.+++.. ....-.|..+ ..
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCET-GITATPCGECDNCREIEQ 84 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCCCCCCCCCHHHHHHHc
Confidence 467899999999999888874221 12479999999999999999999996531 1111122221 10
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. ++-.+-+ ....+.++.+.+.+.+. ...+.|+||||+|+++...+|.||+.||+ ...+++
T Consensus 85 g~~~D~ieida--as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v~ 151 (647)
T PRK07994 85 GRFVDLIEIDA--ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVK 151 (647)
T ss_pred CCCCCceeecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCeE
Confidence 00 0000101 11122222233333333 24567999999999999999999999997 345777
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++|+. ...+.+.+++|| ..+.|.+++.+++...+...+..
T Consensus 152 FIL~Tt~------------------------------~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~------- 193 (647)
T PRK07994 152 FLLATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA------- 193 (647)
T ss_pred EEEecCC------------------------------ccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-------
Confidence 8887775 223567899999 89999999999999888877743
Q ss_pred cCCceecCHHHHHHHHhc
Q 002068 875 RKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~ 892 (973)
. .+.++++++..|+..
T Consensus 194 e--~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 194 E--QIPFEPRALQLLARA 209 (647)
T ss_pred c--CCCCCHHHHHHHHHH
Confidence 2 367899999999875
No 178
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.5e-14 Score=173.39 Aligned_cols=200 Identities=19% Similarity=0.270 Sum_probs=132.1
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc------cc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~ 720 (973)
-+++|+||+.+++.|.+.+...+ ....+||+||+|||||++|++||+.+++...+-. --|+.+ ..
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r--------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-~pCg~C~sC~~~~~ 83 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR--------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-TPCGECDSCVALAP 83 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC--------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-CCCcccHHHHHHHc
Confidence 46789999999999988887422 1124899999999999999999999975321100 012221 10
Q ss_pred h----hhhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 721 K----HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 721 ~----~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
. .++..+-+.. ..+.++...+.+.+. ...+.|+||||+|+++...+|.||+.||+ .-.+
T Consensus 84 g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-----------pP~~ 150 (824)
T PRK07764 84 GGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-----------PPEH 150 (824)
T ss_pred CCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-----------CCCC
Confidence 0 0011111100 112121122222222 35678999999999999999999999997 3357
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI 872 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~ 872 (973)
++||++|+. ...+.+.+.+|| .++.|.+++.+++.+++...++.
T Consensus 151 ~~fIl~tt~------------------------------~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~----- 194 (824)
T PRK07764 151 LKFIFATTE------------------------------PDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ----- 194 (824)
T ss_pred eEEEEEeCC------------------------------hhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH-----
Confidence 788888765 112445788999 88999999999999888876643
Q ss_pred HhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 873 ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.| +.++++++.+|++... .+.|...+.+++++
T Consensus 195 --EG--v~id~eal~lLa~~sg---GdlR~Al~eLEKLi 226 (824)
T PRK07764 195 --EG--VPVEPGVLPLVIRAGG---GSVRDSLSVLDQLL 226 (824)
T ss_pred --cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 33 6689999999988632 23566666665543
No 179
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.56 E-value=3.8e-14 Score=171.23 Aligned_cols=177 Identities=24% Similarity=0.337 Sum_probs=131.1
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
.+.+++|+||||||||+++++++..+ +.+++.++.+.+.. .+.|.....++.+|..+... .|+||||
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~~~--~~~g~~~~~~~~~f~~a~~~-~P~IifI 250 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVE--MFVGVGASRVRDMFEQAKKA-APCIIFI 250 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHhHH--hhhcccHHHHHHHHHHHHhc-CCcEEEe
Confidence 35679999999999999999999998 88999999887763 46677788889999988654 5899999
Q ss_pred ccccccccCCCCC---chh---hHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHH
Q 002068 355 DEIHTVVGAGATN---GAM---DAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVE 421 (973)
Q Consensus 355 DEi~~l~~~~~~~---~~~---~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~ 421 (973)
||+|.+...+... +.. ...+.|+..++ ...+.+|+|||.++ .+|+++.| ||+ .|.|+.|+.+
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcccceEEEcCCCCHH
Confidence 9999997654321 111 23333333333 44789999999998 69999998 997 7999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhh
Q 002068 422 DTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 422 e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~ 479 (973)
++.+||+.+..+.....++ .+..+++.+.+| .+.+...++++|...+.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~-----d~~~la~~t~G~-----sgadl~~l~~eAa~~a~ 373 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI-----DAAIIARGTPGF-----SGADLANLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC-----CHHHHHhhCCCC-----CHHHHHHHHHHHHHHHH
Confidence 9999999887754322222 234456666554 34567777777765543
No 180
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=5.8e-14 Score=162.52 Aligned_cols=198 Identities=21% Similarity=0.350 Sum_probs=127.6
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc------c
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------E 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------~ 720 (973)
.+++++||++++..|...+... +....+||+||||||||++|+++|+.+.+...+. ...|..+. .
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~-~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKG-VEPCNECRACRSIDE 82 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCCCcccHHHHHHhc
Confidence 3578999999988887776532 1222589999999999999999999986432111 11111110 0
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. .+..+-+ ....|..+...+.+.+.. ..+.||||||+|.+....++.|+..+++ ...+++
T Consensus 83 g~~~dv~el~a--a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~~~vv 149 (472)
T PRK14962 83 GTFMDVIELDA--ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PPSHVV 149 (472)
T ss_pred CCCCccEEEeC--cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CCCcEE
Confidence 00 0000100 001121111223333332 3457999999999999999999999986 223566
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++|+. ...+.+.+.+|+ .++.|.|++.+++..++...+..
T Consensus 150 ~Ilattn------------------------------~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~------- 191 (472)
T PRK14962 150 FVLATTN------------------------------LEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEA------- 191 (472)
T ss_pred EEEEeCC------------------------------hHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHH-------
Confidence 7766653 112467889999 78999999999998888876642
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.++++++++|++.. ..++|.+-+.++.
T Consensus 192 e--gi~i~~eal~~Ia~~s---~GdlR~aln~Le~ 221 (472)
T PRK14962 192 E--GIEIDREALSFIAKRA---SGGLRDALTMLEQ 221 (472)
T ss_pred c--CCCCCHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 3 3678999999999853 2346665555554
No 181
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.55 E-value=9.9e-14 Score=156.88 Aligned_cols=235 Identities=17% Similarity=0.241 Sum_probs=155.2
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 637 REKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 637 ~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.+.+..+.+.+.+.++|++++++.+..++.. + +++||.||||||||++|++||+.+.+.. +|..+.+.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aala---g--------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS---G--------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHcc---C--------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee
Confidence 4567788889999999999999988776642 1 2799999999999999999999885433 66655554
Q ss_pred cccchhhhhhhcCCCCCcccccccchhh----HHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLT----EVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 717 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~----~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
-.. ...++|...-+..... +.+. +.+..+ .|||+|||.++++.+|+.|+++|+++.++. .|.....+.
T Consensus 76 ftt----p~DLfG~l~i~~~~~~-g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~ 147 (498)
T PRK13531 76 FST----PEEVFGPLSIQALKDE-GRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPM 147 (498)
T ss_pred ecC----cHHhcCcHHHhhhhhc-CchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCC
Confidence 211 2356664211110000 1111 112122 299999999999999999999999999986 577777776
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC-HHHHHHHHHHHH------
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQL------ 865 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~-~~~l~~I~~~~l------ 865 (973)
-+|+++||.-++ ...|.+++++||-..|.++|++ .++..+++...-
T Consensus 148 rfiv~ATN~LPE---------------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~ 200 (498)
T PRK13531 148 RLLVTASNELPE---------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP 200 (498)
T ss_pred cEEEEECCCCcc---------------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCC
Confidence 667777785111 2347779999996679999997 456567765421
Q ss_pred ---------HHHHHHHHhcCCceecCHHHHHHHHhcCC-----C--CCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 002068 866 ---------DRVQKRIADRKMKMQVTDAAIQLLGSLGY-----D--PNYGARPVKRVIQQYVENELAKGILRGE 923 (973)
Q Consensus 866 ---------~~~~~~~~~~~~~l~~~~~a~~~L~~~~~-----~--~~~gaR~L~r~i~~~i~~~la~~~l~~~ 923 (973)
.++ ..+...--.+.+++++.+||.+..- . +..+- |.-..++.-.-|.+++.|+
T Consensus 201 ~~~~~vis~eel-~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~Sp----R~~~~l~~~akA~A~l~GR 269 (498)
T PRK13531 201 VPASLQITDEEY-QQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSD----RRWKKAIRLLQASAFFSGR 269 (498)
T ss_pred CcccCCCCHHHH-HHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCc----HHHHHHHHHHHHHHHHCCC
Confidence 111 1111111257889999999887531 1 11233 3334456666788888876
No 182
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=144.08 Aligned_cols=166 Identities=27% Similarity=0.474 Sum_probs=122.0
Q ss_pred ccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
.+.+-|.+..++.|.+.+... ..|+..|+ .+||+||||||||.+|+++|+.. +..|+++..+++.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK----GvlLygppgtGktLlaraVahht---~c~firvsgselv 218 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 218 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc----ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHH
Confidence 455667777777777766421 23555443 59999999999999999999988 6789999999875
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
. +++|..... .+.++-..++..++|+|.||||++. .++|..+|.++..- +|. -
T Consensus 219 q-----k~igegsrm-----vrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-----dgf-e 282 (404)
T KOG0728|consen 219 Q-----KYIGEGSRM-----VRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----DGF-E 282 (404)
T ss_pred H-----HHhhhhHHH-----HHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-----ccc-c
Confidence 4 445543222 2456677788889999999999875 56888888887531 111 1
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
..+|.-+||+||. .+-++|+|+ +|+|..|.|||++.+...+|++..-+
T Consensus 283 atknikvimatnr------------------------------idild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 283 ATKNIKVIMATNR------------------------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccceEEEEeccc------------------------------cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 2357789999997 233566666 89999999999999988888875543
No 183
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.7e-14 Score=150.57 Aligned_cols=168 Identities=20% Similarity=0.262 Sum_probs=122.0
Q ss_pred CCCCCCCchHHHHHHHHHh--------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc
Q 002068 253 KLDPVIGRDDEIRRCIQIL--------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 324 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l--------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~ 324 (973)
.|+.||-+-..-+++-++. .+....|++||||||||||++|+.||+.- |..+-.+..+++-
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDVA- 421 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDVA- 421 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCcc-
Confidence 4777877654444443332 11234689999999999999999999885 5444333322221
Q ss_pred cccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchh-hHHHHHhhhh----c-CCCEEEEEccCchHHHh
Q 002068 325 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAM-DAGNLLKPML----G-RGELRCIGATTLDEYRK 398 (973)
Q Consensus 325 g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~-~~~~~L~~~l----~-~g~i~iI~at~~~~~~~ 398 (973)
....+.-.++.++|+.++.+..+.+|||||+|.++..+...+.. +.-..|..+| + +.+|+++.+||.+.
T Consensus 422 --PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg--- 496 (630)
T KOG0742|consen 422 --PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 496 (630)
T ss_pred --ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc---
Confidence 11124456789999999998889999999999999777655332 2223333333 2 55899999999998
Q ss_pred hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhc
Q 002068 399 YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHH 438 (973)
Q Consensus 399 ~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~ 438 (973)
.+|.++-+||+ .|+|+.|..+|+.++|..++++|-...
T Consensus 497 --dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~ 535 (630)
T KOG0742|consen 497 --DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKP 535 (630)
T ss_pred --chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCc
Confidence 79999999998 789999999999999999998876443
No 184
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.9e-14 Score=163.80 Aligned_cols=199 Identities=21% Similarity=0.299 Sum_probs=132.8
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc------ccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE------YME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~------~~~ 720 (973)
.+++|+||+.+++.|.+.+...+ ....+||+||+|||||++|+++|+.+++...+- .-.|+. +..
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR--------INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATPCGVCESCVALAP 81 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCcccccHHHHHhhc
Confidence 46789999999999998887321 112379999999999999999999997532111 011221 111
Q ss_pred h----hhhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 721 K----HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 721 ~----~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
. .++-.+-+. ...|.++...+.+.+. ...+.|+||||+|.++...+|.||..||+ ...+
T Consensus 82 ~~~~~~dvieidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------pp~~ 148 (584)
T PRK14952 82 NGPGSIDVVELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------PPEH 148 (584)
T ss_pred ccCCCceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------CCCC
Confidence 0 000011111 1112222223333333 34578999999999999999999999997 3457
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI 872 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~ 872 (973)
++||++|+. ...+.+.+.+|+ ..+.|.+++.+++.+.+...+..
T Consensus 149 ~~fIL~tte------------------------------~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~----- 192 (584)
T PRK14952 149 LIFIFATTE------------------------------PEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ----- 192 (584)
T ss_pred eEEEEEeCC------------------------------hHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH-----
Confidence 888887765 123556789998 78999999999998888776643
Q ss_pred HhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 873 ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.| +.++++++.+|+..+- .+.|...+.++++
T Consensus 193 --eg--i~i~~~al~~Ia~~s~---GdlR~aln~Ldql 223 (584)
T PRK14952 193 --EG--VVVDDAVYPLVIRAGG---GSPRDTLSVLDQL 223 (584)
T ss_pred --cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 33 5789999999988532 3356666666553
No 185
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.8e-14 Score=162.29 Aligned_cols=202 Identities=18% Similarity=0.318 Sum_probs=131.8
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC----cceEE-eccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~----~~~~~-i~~~~~~~~ 721 (973)
-+++++||+.++..|.+.+...+ ....+||+||+|||||++|+++|+.+.+.. .++.. -.|..+...
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~r--------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQK--------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 35789999999999988886422 122489999999999999999999986421 11100 011111100
Q ss_pred hhhhhhcC-CCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 722 HAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 722 ~~~~~l~G-~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
....++. ......|.++...+.+.+. ...+.|+||||+|+++...++.|+..||+. ..+++||
T Consensus 86 -~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-----------p~~v~fI 153 (546)
T PRK14957 86 -SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-----------PEYVKFI 153 (546)
T ss_pred -CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-----------CCCceEE
Confidence 0001100 0001222222233333333 245679999999999999999999999972 2456677
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRK 876 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~ 876 (973)
++|+. ...+.+.+++|| .++.|.+++.+++.+.+...+.+ .|
T Consensus 154 L~Ttd------------------------------~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~-------eg 195 (546)
T PRK14957 154 LATTD------------------------------YHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK-------EN 195 (546)
T ss_pred EEECC------------------------------hhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH-------cC
Confidence 66654 122345689999 89999999999999888876643 33
Q ss_pred CceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 877 MKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 877 ~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.++++++++|+..+ . .+.|.+-+.+++++
T Consensus 196 --i~~e~~Al~~Ia~~s-~--GdlR~alnlLek~i 225 (546)
T PRK14957 196 --INSDEQSLEYIAYHA-K--GSLRDALSLLDQAI 225 (546)
T ss_pred --CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHHH
Confidence 678999999999864 2 33666666665533
No 186
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.7e-14 Score=159.19 Aligned_cols=201 Identities=17% Similarity=0.269 Sum_probs=128.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC----cceE-Eeccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~----~~~~-~i~~~~~~~~ 721 (973)
-+++|+||+.+++.+.+++...+ ....+||+||+|||||++|+++|+.+.+.. .|+. ...|.++...
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~--------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGR--------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKG 85 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCC--------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 35789999999999988876321 112479999999999999999999996421 1110 0111111111
Q ss_pred hhhhhhc-CCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 722 HAVSRLI-GAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 722 ~~~~~l~-G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
... .++ ..+....+......+.+.+.. ..+.|++|||+|+++...++.|++.+++ ...++.||
T Consensus 86 ~~~-d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~~fI 153 (363)
T PRK14961 86 LCL-DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHIKFI 153 (363)
T ss_pred CCC-ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEE
Confidence 000 000 000001111111222233322 2356999999999999999999999987 22466777
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRK 876 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~ 876 (973)
++|+. ...+.+.+.+|+ ..+.|+|++.+++.+++...+.. .
T Consensus 154 l~t~~------------------------------~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~-------~- 194 (363)
T PRK14961 154 LATTD------------------------------VEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIK-------E- 194 (363)
T ss_pred EEcCC------------------------------hHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH-------c-
Confidence 77764 122556788999 78999999999999888876643 2
Q ss_pred CceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 877 MKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 877 ~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.+.++++++++|+... . .+.|...+.+++.
T Consensus 195 -g~~i~~~al~~ia~~s-~--G~~R~al~~l~~~ 224 (363)
T PRK14961 195 -SIDTDEYALKLIAYHA-H--GSMRDALNLLEHA 224 (363)
T ss_pred -CCCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 3668999999999863 2 2356555555543
No 187
>PLN03025 replication factor C subunit; Provisional
Probab=99.55 E-value=6.6e-14 Score=156.24 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=125.6
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC--cceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~--~~~~~i~~~~~~~~~~~~ 725 (973)
..+++||++++..|...+.. .+- .++||+||||||||++|+++|+.+++.. ..++.++.++......+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~-------~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr 82 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARD-------GNM--PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR 82 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhc-------CCC--ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHH
Confidence 35688999988888665542 111 2799999999999999999999997643 234555554332111111
Q ss_pred hhcCCCCCcccccccchhhHHHH------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEec
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 799 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ts 799 (973)
..+ ..... ...+.|++|||+|.+....|+.|+..++. ....+.||+++
T Consensus 83 ~~i---------------~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~~~~t~~il~~ 136 (319)
T PLN03025 83 NKI---------------KMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------YSNTTRFALAC 136 (319)
T ss_pred HHH---------------HHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------ccCCceEEEEe
Confidence 110 00000 12457999999999999999999999985 12346688888
Q ss_pred CCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCce
Q 002068 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKM 879 (973)
Q Consensus 800 N~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l 879 (973)
|. ...+.+++.+|+ .++.|++++.+++...+...+++ . .+
T Consensus 137 n~------------------------------~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~-------e--gi 176 (319)
T PLN03025 137 NT------------------------------SSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA-------E--KV 176 (319)
T ss_pred CC------------------------------ccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH-------c--CC
Confidence 86 123456799999 68999999999998888776633 3 36
Q ss_pred ecCHHHHHHHHhcCCCCCCCccHHHHHHH
Q 002068 880 QVTDAAIQLLGSLGYDPNYGARPVKRVIQ 908 (973)
Q Consensus 880 ~~~~~a~~~L~~~~~~~~~gaR~L~r~i~ 908 (973)
.++++++++|+..+ .+ +.|.+-+.++
T Consensus 177 ~i~~~~l~~i~~~~-~g--DlR~aln~Lq 202 (319)
T PLN03025 177 PYVPEGLEAIIFTA-DG--DMRQALNNLQ 202 (319)
T ss_pred CCCHHHHHHHHHHc-CC--CHHHHHHHHH
Confidence 78999999999853 22 2455544444
No 188
>PHA02244 ATPase-like protein
Probab=99.55 E-value=4.5e-13 Score=146.54 Aligned_cols=205 Identities=14% Similarity=0.153 Sum_probs=131.0
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
+....+|....+......+.++... +. ++||+||||||||++|++||..+ +.+|+.++. +.+ ...
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~----~~---PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~ 158 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA----NI---PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFE 158 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc----CC---CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHh
Confidence 3456677787777666666544321 11 59999999999999999999998 678988873 221 223
Q ss_pred hcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 727 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 727 l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+.|...+ .|....+.+..++ ..+++||||||+.++++++..|..+++++.+....+.....+++.+|+|+|......
T Consensus 159 L~G~i~~-~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~ 235 (383)
T PHA02244 159 LKGFIDA-NGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGA 235 (383)
T ss_pred hcccccc-cccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCc
Confidence 3442111 1111223444444 456799999999999999999999999987776655555567999999999832111
Q ss_pred hccC-CCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH--HHHHHHHHH----HHhcCCce
Q 002068 807 LNMD-DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR--LQLDRVQKR----IADRKMKM 879 (973)
Q Consensus 807 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~--~~l~~~~~~----~~~~~~~l 879 (973)
.... + .+.+.+++++|| ..|.|..++..+. .|+. ..+-++... +...++..
T Consensus 236 ~~~y~G--------------------~k~L~~AllDRF-v~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~l~~ 293 (383)
T PHA02244 236 DHIYVA--------------------RNKIDGATLDRF-APIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKGLDH 293 (383)
T ss_pred ccccCC--------------------CcccCHHHHhhc-EEeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCCCCc
Confidence 1100 1 245788999999 6789988874433 2221 222223333 33355555
Q ss_pred ecCHHHHHHHHh
Q 002068 880 QVTDAAIQLLGS 891 (973)
Q Consensus 880 ~~~~~a~~~L~~ 891 (973)
.++.-.+-+.++
T Consensus 294 ~~StR~li~~a~ 305 (383)
T PHA02244 294 VFSMRAIIHGKK 305 (383)
T ss_pred cccHHHHHHHHH
Confidence 666655544444
No 189
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-14 Score=149.87 Aligned_cols=182 Identities=26% Similarity=0.414 Sum_probs=136.4
Q ss_pred CCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+|+.+-|-...++.+.+.+. -..+..++||||||+|||.+|+++|..+ ++.++.+..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeH
Confidence 77888888777777777541 1345567999999999999999999999 899999988
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCch---hhHHHHHhhhh-------cCCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPML-------GRGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~---~~~~~~L~~~l-------~~g~i~iI~ 389 (973)
+++.+ +|.|+...-+++.|..++.. .+||||+||||.+.+...+++. ..++..|-.++ +-+++.+|+
T Consensus 200 s~lv~--kyiGEsaRlIRemf~yA~~~-~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 200 SALVD--KYIGESARLIRDMFRYAREV-IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred hhhhh--hhcccHHHHHHHHHHHHhhh-CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 88884 59999999999999999875 5799999999999876654433 33333333332 256999999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
|||.++ .+||+|.| |++ .++++.|+...+..|++--...... |+ .++++ +++++++.|
T Consensus 277 atNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~G-eid~e---aivK~~d~f 337 (388)
T KOG0651|consen 277 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HG-EIDDE---AILKLVDGF 337 (388)
T ss_pred ecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cc-cccHH---HHHHHHhcc
Confidence 999998 69999999 997 6899999999888877543332221 11 23444 445666544
No 190
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=1e-13 Score=160.06 Aligned_cols=183 Identities=21% Similarity=0.387 Sum_probs=130.7
Q ss_pred ccccccchHHHHH---HHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKS---VAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~---l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
.++++||++++.. +...+... + ..+++|+||||||||++|+++++.+ ...++.+++...... .+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--------~-~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~~-~i 77 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--------R-LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGVK-DL 77 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--------C-CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccHH-HH
Confidence 4578999988766 66665421 1 1279999999999999999999988 567888777543110 11
Q ss_pred hhhcCCCCCcccccccchhhHHH----HhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVV----RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~----~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
..+.+.+ ....+.||||||||.+....++.|+..+++|. +++|.+|+
T Consensus 78 ----------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att 128 (413)
T PRK13342 78 ----------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATT 128 (413)
T ss_pred ----------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCC
Confidence 1111222 12356799999999999999999999998753 34555544
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
... ...+.+++++|| .++.|.|++.+++..++...+.... .++ +.
T Consensus 129 ~n~----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~ 173 (413)
T PRK13342 129 ENP----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VE 173 (413)
T ss_pred CCh----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CC
Confidence 311 123567899999 7899999999999999988775431 233 47
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
++++++++|++.+ + ...|.+.+.++..
T Consensus 174 i~~~al~~l~~~s-~--Gd~R~aln~Le~~ 200 (413)
T PRK13342 174 LDDEALDALARLA-N--GDARRALNLLELA 200 (413)
T ss_pred CCHHHHHHHHHhC-C--CCHHHHHHHHHHH
Confidence 8999999999964 3 3478777777765
No 191
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.54 E-value=9.3e-14 Score=160.36 Aligned_cols=164 Identities=25% Similarity=0.407 Sum_probs=110.6
Q ss_pred ccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC-------CcceEE
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVR 712 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~-------~~~~~~ 712 (973)
+..|.|.+..++.+...+... ..|+..| . .+||+||||||||++|+++|+.+... ...|+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p---~-GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPP---K-GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC---c-ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 355778888888888877431 2233322 2 69999999999999999999998321 111233
Q ss_pred eccccccchhhhhhhcCCCCCcccccc--cchhhHHHHh----CCCeEEEEccccccCH------------HHHHHHHHh
Q 002068 713 IDMSEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRR----RPYAVILFDEIEKAHS------------DVFNVFLQI 774 (973)
Q Consensus 713 i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~----~~~~Vl~lDEid~l~~------------~v~~~Ll~~ 774 (973)
+..+++.. + |+|..+ ...++..++. ..++||||||+|.+.. .+.+.|++.
T Consensus 257 v~~~eLl~-----k-------yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 257 IKGPELLN-----K-------YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ccchhhcc-----c-------ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 33332211 1 233211 1233344433 3578999999998742 256788888
Q ss_pred hcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCC
Q 002068 775 LDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPL 852 (973)
Q Consensus 775 le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l 852 (973)
|+.-. ...+++||+|||. ...++|+++. |||..|.|++|
T Consensus 325 LDgl~---------~~~~ViVI~ATN~------------------------------~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 325 LDGVE---------SLDNVIVIGASNR------------------------------EDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcccc---------cCCceEEEeccCC------------------------------hhhCCHhhcCccccceEEEeCCC
Confidence 87411 2247889999998 3447888885 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q 002068 853 DRDQISSIVRLQLD 866 (973)
Q Consensus 853 ~~~~l~~I~~~~l~ 866 (973)
+.++..+|+..++.
T Consensus 366 d~e~r~~Il~~~l~ 379 (512)
T TIGR03689 366 DAEAAADIFSKYLT 379 (512)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999884
No 192
>PRK04132 replication factor C small subunit; Provisional
Probab=99.54 E-value=2.7e-12 Score=155.59 Aligned_cols=165 Identities=17% Similarity=0.265 Sum_probs=118.3
Q ss_pred EEEeec--CCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEE
Q 002068 681 SFMFMG--PTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 681 ~~Ll~G--p~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~ 756 (973)
+-+..| |++.|||++|++||+.+++. +.+++.+|+++......+..++.....+.. +...++.|+|
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~----------~~~~~~KVvI 635 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP----------IGGASFKIIF 635 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC----------cCCCCCEEEE
Confidence 456778 99999999999999999874 457999999986443333332211000000 0012347999
Q ss_pred EccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccC
Q 002068 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 836 (973)
|||+|.++.+.|+.|+..||+ ...++.||+++|. ...+.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~------------------------------~~kIi 674 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNY------------------------------SSKII 674 (846)
T ss_pred EECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC------------------------------hhhCc
Confidence 999999999999999999996 2357889999997 23356
Q ss_pred hhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 837 PEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 837 p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
|++.+|| .++.|+|++.+++...+...+.. .| +.+++++++.|+..+ ++ +.|..-+.++.
T Consensus 675 ~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~-------Eg--i~i~~e~L~~Ia~~s-~G--DlR~AIn~Lq~ 734 (846)
T PRK04132 675 EPIQSRC-AIFRFRPLRDEDIAKRLRYIAEN-------EG--LELTEEGLQAILYIA-EG--DMRRAINILQA 734 (846)
T ss_pred hHHhhhc-eEEeCCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 7899999 89999999999998888776532 23 668899999999853 22 24554444443
No 193
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.53 E-value=1.1e-13 Score=163.54 Aligned_cols=164 Identities=25% Similarity=0.400 Sum_probs=116.7
Q ss_pred ccccccchHHHHHHHHHHHHHHc-------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~-------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (973)
+++|.|+++++..+...+...+. |.. .|. ++||+||||||||++|+++|..+ +.+++.++++++.+
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~---~~~-giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAK---IPK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVE 126 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCC---CCC-cEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHH
Confidence 46788999888887776653221 222 233 69999999999999999999988 78899999887643
Q ss_pred hhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEecCCCc
Q 002068 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 721 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~~~g~ 786 (973)
. ..|... .....++..++...++||||||||.+.+ .+++.|+..|+.- .
T Consensus 127 ~-----~~g~~~-----~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~----- 189 (495)
T TIGR01241 127 M-----FVGVGA-----SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--G----- 189 (495)
T ss_pred H-----HhcccH-----HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--c-----
Confidence 2 122211 1113455556666779999999998742 3556667666531 1
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
.-.+++||+|||. ...++|+++ +|||..|.+++|+.++..+|++.+
T Consensus 190 --~~~~v~vI~aTn~------------------------------~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 190 --TNTGVIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred --CCCCeEEEEecCC------------------------------hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 1235789999998 233567776 499999999999999999999987
Q ss_pred HHH
Q 002068 865 LDR 867 (973)
Q Consensus 865 l~~ 867 (973)
+..
T Consensus 238 l~~ 240 (495)
T TIGR01241 238 AKN 240 (495)
T ss_pred Hhc
Confidence 753
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.53 E-value=1.6e-13 Score=148.35 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=108.5
Q ss_pred CCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-----hC
Q 002068 676 HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-----RR 750 (973)
Q Consensus 676 ~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-----~~ 750 (973)
+.|. .++|+||||||||.+|+++|+.+ +.+++.++.+++..+ .+|.+...+ ..++..++ +.
T Consensus 146 k~Pl-gllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk-----~vGEsEk~I-----R~~F~~A~~~a~~~~ 211 (413)
T PLN00020 146 KVPL-ILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE-----NAGEPGKLI-----RQRYREAADIIKKKG 211 (413)
T ss_pred CCCe-EEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC-----cCCcHHHHH-----HHHHHHHHHHhhccC
Confidence 3444 69999999999999999999999 788999999988543 233332211 23333333 23
Q ss_pred CCeEEEEccccccCHH------------HHHHHHHhhcCCeEecCCC---cEEeccCEEEEEecCCChhhhhccCCCCCC
Q 002068 751 PYAVILFDEIEKAHSD------------VFNVFLQILDDGRVTDSQG---RTVSFTNTVIIMTSNVGSQYILNMDDETFP 815 (973)
Q Consensus 751 ~~~Vl~lDEid~l~~~------------v~~~Ll~~le~g~~~~~~g---~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~ 815 (973)
.+|||||||||.+.+. +...|++++|+=...--.| ..-...++.||+|||.
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr-------------- 277 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND-------------- 277 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC--------------
Confidence 5799999999976532 2367888887411000001 0112356889999997
Q ss_pred ccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 816 KETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 816 ~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
...+.|+|+. |||..+ ..|+.++..+|++..++. ..++..-+..|+..
T Consensus 278 ----------------pd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~-----------~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 278 ----------------FSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD-----------DGVSREDVVKLVDT 327 (413)
T ss_pred ----------------cccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc-----------CCCCHHHHHHHHHc
Confidence 3447888886 999865 468999999999987743 23556666777773
No 195
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.9e-14 Score=149.63 Aligned_cols=208 Identities=22% Similarity=0.303 Sum_probs=147.5
Q ss_pred ccccccchHHHHHHHHHHHHH------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccch
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 721 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~ 721 (973)
|.+|.|..++++-|.+++... ..|+. +|--.+|++||||||||+||+++|.+. +..|+.|..+.+..+
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK 284 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc---cccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh
Confidence 678999999999998887432 22333 554469999999999999999999998 677888877776544
Q ss_pred hhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC------------HHHHHHHHHhhcCCeEecCCCcEEe
Q 002068 722 HAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVS 789 (973)
Q Consensus 722 ~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~------------~~v~~~Ll~~le~g~~~~~~g~~v~ 789 (973)
.-|.+...+ +.+++.++...+++|||||||.+- ..+-+.||..||.-. ...+
T Consensus 285 -----wRGeSEKlv-----RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~------~t~e 348 (491)
T KOG0738|consen 285 -----WRGESEKLV-----RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ------GTLE 348 (491)
T ss_pred -----hccchHHHH-----HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc------cccc
Confidence 334333222 477899998889999999999763 458899999998521 1111
Q ss_pred c-cCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHH
Q 002068 790 F-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRV 868 (973)
Q Consensus 790 ~-~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~ 868 (973)
. +-++|+++||..- .++.+|+.||...|.++-++.+....++...|..
T Consensus 349 ~~k~VmVLAATN~PW------------------------------diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~- 397 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPW------------------------------DIDEALRRRLEKRIYIPLPDAEARSALIKILLRS- 397 (491)
T ss_pred cceeEEEEeccCCCc------------------------------chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc-
Confidence 1 2366888888721 1355788999778889999999999998887743
Q ss_pred HHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 869 QKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 869 ~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
+..++++ ++.|++. ...|....+..+++.+-++++=+.+.
T Consensus 398 ----------~~~~~~~~~~~lae~--~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 398 ----------VELDDPVNLEDLAER--SEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred ----------ccCCCCccHHHHHHH--hcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 3333333 4666663 22344567888888877777665553
No 196
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.53 E-value=1.3e-13 Score=160.09 Aligned_cols=248 Identities=18% Similarity=0.202 Sum_probs=145.4
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh---hhh
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH---AVS 725 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~---~~~ 725 (973)
.+|+||+.+++.+..++. +. .+++|.||||||||++|+.++..+..... -..++...+..-. ...
T Consensus 192 ~dv~Gq~~~~~al~~aa~----~g-------~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA----GG-------HNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhcc----CC-------CEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhccc
Confidence 678999988776644432 22 27999999999999999999987743211 1222222221100 000
Q ss_pred hhcCC-----------CCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEec-cC
Q 002068 726 RLIGA-----------PPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TN 792 (973)
Q Consensus 726 ~l~G~-----------~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~-~~ 792 (973)
.-+.. ....+|-. .....+.+..+.++||||||++.+++.+|+.|++.||+|.++... |..+.+ .+
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cccccCCccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 00000 00011100 002245677888999999999999999999999999999876543 444445 48
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHH------------H
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS------------I 860 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~------------I 860 (973)
+.+|+++|+++... .+.....+.+-...+. ....+++.+|++|||..+.+++++.+++.+ -
T Consensus 339 frlIaa~Npcpcg~------~~~~~~~c~c~~~~~~-~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~r 411 (499)
T TIGR00368 339 FQLVAAMNPCPCGH------YGGKNTHCRCSPQQIS-RYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQR 411 (499)
T ss_pred eEEEEecCCcccCc------CCCCcccccCCHHHHH-HHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHH
Confidence 99999999863111 1110011222222222 234578899999999999999987665422 2
Q ss_pred HHHHHHHHHHHHHhc---CCc-----------eecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHH
Q 002068 861 VRLQLDRVQKRIADR---KMK-----------MQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKG 918 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~---~~~-----------l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~ 918 (973)
+...-....+++... .++ ..+++++.+.|....-..+.++|+..++++ +...+|+.
T Consensus 412 V~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL 481 (499)
T TIGR00368 412 VIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADL 481 (499)
T ss_pred HHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhh
Confidence 221112222333221 111 346777777776643344578898888886 45555543
No 197
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.53 E-value=1e-13 Score=167.33 Aligned_cols=191 Identities=18% Similarity=0.315 Sum_probs=131.6
Q ss_pred cccccchHHHH---HHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh
Q 002068 649 KRVVGQDPAVK---SVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 649 ~~v~Gq~~~i~---~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~ 725 (973)
++++||++.+. .+.+.+.. ....+++|+||||||||++|+++++.+ ..+++.+++...... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i~-dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGVK-DLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhhH-HHH
Confidence 56889998885 34444331 112379999999999999999999987 567777777532110 000
Q ss_pred hhcCCCCCcccccccchhhHHHH-hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChh
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 804 (973)
..+ ......+. .....||||||||.++...|+.|+..+++|. +++|++|+...
T Consensus 95 ~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp- 148 (725)
T PRK13341 95 AEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIGATTENP- 148 (725)
T ss_pred HHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCCh-
Confidence 000 01111111 1245699999999999999999999998754 34565554311
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
...+.+++++|+ .++.|+|++.+++..++...+......+... .+.++++
T Consensus 149 ---------------------------~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~--~v~I~de 198 (725)
T PRK13341 149 ---------------------------YFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR--KVDLEPE 198 (725)
T ss_pred ---------------------------HhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc--ccCCCHH
Confidence 112456788898 6899999999999999999887654433222 4789999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
++++|++++ + .++|.+.+.++..+
T Consensus 199 aL~~La~~s-~--GD~R~lln~Le~a~ 222 (725)
T PRK13341 199 AEKHLVDVA-N--GDARSLLNALELAV 222 (725)
T ss_pred HHHHHHHhC-C--CCHHHHHHHHHHHH
Confidence 999999965 3 44899888888754
No 198
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.53 E-value=1.3e-13 Score=152.27 Aligned_cols=235 Identities=16% Similarity=0.207 Sum_probs=146.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC----CcceE-----------
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EEALV----------- 711 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~----~~~~~----------- 711 (973)
.+..|+||++++.+|...+.. | .++.+||.||+|||||++|+.+++.+... +.||.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~-------p--~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID-------P--KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC-------C--CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 467899999999988766542 2 23579999999999999999999998431 12232
Q ss_pred -----------------EeccccccchhhhhhhcCCCCCcccccccc--hhhHHHHhCCCeEEEEccccccCHHHHHHHH
Q 002068 712 -----------------RIDMSEYMEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFL 772 (973)
Q Consensus 712 -----------------~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~--~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll 772 (973)
.+.|.++...-+..+++|.-.--.....+. .-.+.+.++.++|||+|||+.+++.+|+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 000000000112223333210000000000 0123455778899999999999999999999
Q ss_pred HhhcCCeEecC-CCcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcC
Q 002068 773 QILDDGRVTDS-QGRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQ 850 (973)
Q Consensus 773 ~~le~g~~~~~-~g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~ 850 (973)
++|++|..+.. .|.....+ ++++|+|.|+. ...|+++|++||...|.+.
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~-----------------------------eg~l~~~LldRf~l~i~l~ 216 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGMHAEIR 216 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcc-----------------------------cCCCCHHHHHHhCceeecC
Confidence 99999865532 24444443 78889988872 1248899999999999999
Q ss_pred CCC-HHHHHHHHHHHHHHH-----------------HHH---HHhcCCceecCHHHHHHHHhcCCCC-CCCccHHHHHHH
Q 002068 851 PLD-RDQISSIVRLQLDRV-----------------QKR---IADRKMKMQVTDAAIQLLGSLGYDP-NYGARPVKRVIQ 908 (973)
Q Consensus 851 ~l~-~~~l~~I~~~~l~~~-----------------~~~---~~~~~~~l~~~~~a~~~L~~~~~~~-~~gaR~L~r~i~ 908 (973)
+++ .++-.+|++.....- ... ....--.+.+++++++|+++....- .-|-| .-.
T Consensus 217 ~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~R----a~i 292 (350)
T CHL00081 217 TVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLR----GDI 292 (350)
T ss_pred CCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCCh----HHH
Confidence 887 477777777543200 011 1111125789999999999864321 12333 333
Q ss_pred HHHHHHHHHHHHcCC
Q 002068 909 QYVENELAKGILRGE 923 (973)
Q Consensus 909 ~~i~~~la~~~l~~~ 923 (973)
.++.-+-|.+++.|+
T Consensus 293 ~l~raArA~Aal~GR 307 (350)
T CHL00081 293 VTNRAAKALAAFEGR 307 (350)
T ss_pred HHHHHHHHHHHHcCC
Confidence 446666777788775
No 199
>CHL00176 ftsH cell division protein; Validated
Probab=99.53 E-value=1.5e-13 Score=163.99 Aligned_cols=167 Identities=23% Similarity=0.375 Sum_probs=115.2
Q ss_pred ccccccchHHHHHHHHHHHHHHccCC----CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (973)
+++|.|.++++..+...+...+.... ....|. ++||+||||||||++|+++|..+ +.|++.++++++.+..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~-gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~~- 256 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEMF- 256 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHHh-
Confidence 46688888888777776644322111 112233 69999999999999999999988 7899999999875431
Q ss_pred hhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HH---HHHHHHHhhcCCeEecCCCcEEe
Q 002068 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SD---VFNVFLQILDDGRVTDSQGRTVS 789 (973)
Q Consensus 724 ~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~---v~~~Ll~~le~g~~~~~~g~~v~ 789 (973)
.|. +......++..++...++||||||||.+. .. +++.|+..+|.-. .
T Consensus 257 ----~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~---------~ 318 (638)
T CHL00176 257 ----VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK---------G 318 (638)
T ss_pred ----hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc---------C
Confidence 221 11111344556666778999999999873 22 4555555555310 1
Q ss_pred ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 790 ~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
-.+++||++||. ...++|+++ +|||..|.|++|+.++..+|++.++..
T Consensus 319 ~~~ViVIaaTN~------------------------------~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 319 NKGVIVIAATNR------------------------------VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CCCeeEEEecCc------------------------------hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 236789999997 122455665 599999999999999999999988754
No 200
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1e-13 Score=160.96 Aligned_cols=200 Identities=15% Similarity=0.244 Sum_probs=133.2
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----c----e-EEecccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----A----L-VRIDMSE 717 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~----~-~~i~~~~ 717 (973)
-+.+++||+.++..|.+++...+ ....+||+||+|||||++|+++|+.+.+... + + ..-+|..
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r--------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR--------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 35789999999999988776422 1236999999999999999999999964211 0 0 1111222
Q ss_pred ccchh--hhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 718 YMEKH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 718 ~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
+.+.. ++..+-+. ...|..+...+.+.+.. ..+.|+||||+|.++...++.|+..|++ ...
T Consensus 91 i~~~~h~Dv~eidaa--s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-----------pp~ 157 (507)
T PRK06645 91 FNNHNHPDIIEIDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-----------PPP 157 (507)
T ss_pred HhcCCCCcEEEeecc--CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----------cCC
Confidence 21110 00111111 11222222233333332 3467999999999999999999999986 235
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+++||++|+. ...+.+.+.+|+ ..+.|.+++.+++..++...++.
T Consensus 158 ~~vfI~aTte------------------------------~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~---- 202 (507)
T PRK06645 158 HIIFIFATTE------------------------------VQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ---- 202 (507)
T ss_pred CEEEEEEeCC------------------------------hHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH----
Confidence 6778877764 122456788999 78999999999999999988753
Q ss_pred HHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 872 IADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
. .+.++++++++|+..+ . .+.|..-+.+++.
T Consensus 203 ---e--gi~ie~eAL~~Ia~~s-~--GslR~al~~Ldka 233 (507)
T PRK06645 203 ---E--NLKTDIEALRIIAYKS-E--GSARDAVSILDQA 233 (507)
T ss_pred ---c--CCCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 3 3678999999999853 2 3466666666654
No 201
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.8e-14 Score=158.31 Aligned_cols=178 Identities=22% Similarity=0.370 Sum_probs=131.6
Q ss_pred CCCCchHHHHHHHHHhccCC------CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-----c
Q 002068 256 PVIGRDDEIRRCIQILSRRT------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----A 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~~------~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~-----~ 324 (973)
+=.|.++.-+|+++.+.-+. ..-++|+||||||||++++.||+.| |..|+++.++.+. -
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhc
Confidence 45788899999999874221 1234799999999999999999999 9999999987763 3
Q ss_pred ccc--ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc-----------------CCCE
Q 002068 325 GAK--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----------------RGEL 385 (973)
Q Consensus 325 g~~--~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~-----------------~g~i 385 (973)
|++ |+|.+..++-+.++...-. +-+++|||||.+-...+ |. ....|+.+|+ -.+|
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~--NPliLiDEvDKlG~g~q--GD--PasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTE--NPLILIDEVDKLGSGHQ--GD--PASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCC--CceEEeehhhhhCCCCC--CC--hHHHHHHhcChhhccchhhhccccccchhhe
Confidence 333 7888888877777766543 34888999999973222 22 2223444442 2388
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHH-HHHhhhc-----CCccCHHHHHHHHHhc
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLR-ERYELHH-----GVRISDSALVEAAILS 454 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~-~~~~~~~-----~v~i~~~~l~~l~~~s 454 (973)
.+|||+|..+ .++++|++|+..|.++-+..+|..+|.+..+ .+....| .+.+++.++..+++..
T Consensus 556 LFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 556 LFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred EEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 9999999987 6999999999999999999999999986544 4333334 4678888887666544
No 202
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=9.9e-14 Score=163.87 Aligned_cols=199 Identities=18% Similarity=0.275 Sum_probs=129.3
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceEEecc------c
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVRIDM------S 716 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~~i~~------~ 716 (973)
-+++|+||+.+++.|.+.+...+. ...+||+||+|||||++|+++|+.+++.+. ....-.| .
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~ 85 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR 85 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence 357799999999999888874321 124799999999999999999999965221 0000112 2
Q ss_pred cccchhhhhhhcC-CCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 717 EYMEKHAVSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 717 ~~~~~~~~~~l~G-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
.+...... .++- ......|.++...+.+.+.. ..+.|++|||+|.++...+|.|+..||+ ...
T Consensus 86 ~i~~g~h~-D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------PP~ 153 (618)
T PRK14951 86 DIDSGRFV-DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------PPE 153 (618)
T ss_pred HHHcCCCC-ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------CCC
Confidence 22110000 0000 00011222222233333332 3468999999999999999999999997 234
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+++||++|+. ...+.+.+++|| .++.|.+++.+++.+.+...+..
T Consensus 154 ~~~fIL~Ttd------------------------------~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~---- 198 (618)
T PRK14951 154 YLKFVLATTD------------------------------PQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAA---- 198 (618)
T ss_pred CeEEEEEECC------------------------------chhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHH----
Confidence 6778877754 112345689999 89999999999999888876643
Q ss_pred HHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHH
Q 002068 872 IADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 908 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~ 908 (973)
. .+.++++++++|++.+ . .+.|.+.+.+.
T Consensus 199 ---e--gi~ie~~AL~~La~~s-~--GslR~al~lLd 227 (618)
T PRK14951 199 ---E--NVPAEPQALRLLARAA-R--GSMRDALSLTD 227 (618)
T ss_pred ---c--CCCCCHHHHHHHHHHc-C--CCHHHHHHHHH
Confidence 3 3678999999999853 2 23555555443
No 203
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.7e-14 Score=165.65 Aligned_cols=200 Identities=20% Similarity=0.297 Sum_probs=132.1
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc------cc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~ 720 (973)
-+.+|+||+.+++.|.+.+... +....+||+||+|||||++|+++++.+++... .....|... ..
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSCTQIDA 84 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHHHHHhc
Confidence 3578999999999998888742 11235899999999999999999999965321 111112211 10
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. ++..+-+ ....|.+....+.+.+. ...+.|+||||+|+++...++.|++.|++ ...+++
T Consensus 85 g~~~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v~ 151 (709)
T PRK08691 85 GRYVDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVK 151 (709)
T ss_pred cCccceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCcE
Confidence 00 0000000 01112111122222222 24567999999999999999999999996 234677
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++||. ...+.+.+++|| ..+.|++++.+++...+...+..
T Consensus 152 fILaTtd------------------------------~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~k------- 193 (709)
T PRK08691 152 FILATTD------------------------------PHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDS------- 193 (709)
T ss_pred EEEEeCC------------------------------ccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHH-------
Confidence 8888875 122455688999 78999999999999988876643
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
. .+.++++++.+|++.+ . .+.|.+.+.+++.+
T Consensus 194 E--gi~id~eAL~~Ia~~A-~--GslRdAlnLLDqai 225 (709)
T PRK08691 194 E--KIAYEPPALQLLGRAA-A--GSMRDALSLLDQAI 225 (709)
T ss_pred c--CCCcCHHHHHHHHHHh-C--CCHHHHHHHHHHHH
Confidence 3 3678999999999864 2 33666666665543
No 204
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.7e-13 Score=160.56 Aligned_cols=197 Identities=20% Similarity=0.329 Sum_probs=128.9
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc------cc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~ 720 (973)
-+++|+||+.++..|.+++...+. ...+||+||+|||||++|+++|+.+++...+ ....|... ..
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~-~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAP-TGEPCNTCEQCRKVTQ 84 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCC-CCCCCcccHHHHHHhc
Confidence 357889999999999888863211 1269999999999999999999999653110 00112221 00
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. ++..+-+. ...+.+....+.+.+. ...+.||||||+|+++...++.|++.||+ ...+++
T Consensus 85 g~hpDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~~~~i 151 (624)
T PRK14959 85 GMHVDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PPARVT 151 (624)
T ss_pred CCCCceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cCCCEE
Confidence 00 00111111 0112222223333333 34567999999999999999999999987 224677
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++||. ...+.+.+.+|| .+|.|++++.+++..++...+..
T Consensus 152 fILaTt~------------------------------~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~------- 193 (624)
T PRK14959 152 FVLATTE------------------------------PHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGR------- 193 (624)
T ss_pred EEEecCC------------------------------hhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHH-------
Confidence 8887775 223445688999 68899999999999888876532
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 908 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~ 908 (973)
. .+.+++++++.|++... .+.|..-+.++
T Consensus 194 e--gi~id~eal~lIA~~s~---GdlR~Al~lLe 222 (624)
T PRK14959 194 E--GVDYDPAAVRLIARRAA---GSVRDSMSLLG 222 (624)
T ss_pred c--CCCCCHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 2 36689999999998642 22454444444
No 205
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=1.6e-13 Score=151.37 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=143.3
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEec----ccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN------TEEALVRID----MSE 717 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~----~~~ 717 (973)
+..|+||+++++.+..++.. .+ .+++||.|+||||||++|++++..+.. ....+..+. +.+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~--~~-------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID--PG-------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc--cC-------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 46799999999887654321 11 248999999999999999999999831 000111111 100
Q ss_pred ccc---------------hhhhhhhcCCCCCcccccccc--hhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeE
Q 002068 718 YME---------------KHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRV 780 (973)
Q Consensus 718 ~~~---------------~~~~~~l~G~~~g~~g~~~~~--~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~ 780 (973)
... ..+...++|...-...-..++ .-.+.+.++.+++||+|||+.+++.+|+.|+++|++|.+
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 000 001122333210000000000 112344567778999999999999999999999999975
Q ss_pred ec-CCCcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCH-HHH
Q 002068 781 TD-SQGRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQI 857 (973)
Q Consensus 781 ~~-~~g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~-~~l 857 (973)
+. ..|....++ ++++|+|+|+. ...+++++++||...|.+.++.. ++.
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~-----------------------------e~~l~~aLldRF~~~v~v~~~~~~~e~ 208 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGLSVEVRSPRDVETR 208 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcc-----------------------------cCCCCHHHHhhcceEEEcCCCCcHHHH
Confidence 43 224444554 78899999972 12378899999998888887775 676
Q ss_pred HHHHHHHHHH------HH-----------HH---HHhcCCceecCHHHHHHHHhcCCCCC-CCccHHHHHHHHHHHHHHH
Q 002068 858 SSIVRLQLDR------VQ-----------KR---IADRKMKMQVTDAAIQLLGSLGYDPN-YGARPVKRVIQQYVENELA 916 (973)
Q Consensus 858 ~~I~~~~l~~------~~-----------~~---~~~~~~~l~~~~~a~~~L~~~~~~~~-~gaR~L~r~i~~~i~~~la 916 (973)
.+|+...... +. +. +...=-.+.+++++++|+++....-. -|.|+ .+. ++...-+
T Consensus 209 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra---~i~-l~~aA~a 284 (334)
T PRK13407 209 VEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRG---ELT-LLRAARA 284 (334)
T ss_pred HHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchH---HHH-HHHHHHH
Confidence 7777653321 10 11 11111247899999999998643211 23343 333 6667778
Q ss_pred HHHHcCC
Q 002068 917 KGILRGE 923 (973)
Q Consensus 917 ~~~l~~~ 923 (973)
.++++|+
T Consensus 285 ~A~l~Gr 291 (334)
T PRK13407 285 LAAFEGA 291 (334)
T ss_pred HHHHcCC
Confidence 8888875
No 206
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.3e-13 Score=163.61 Aligned_cols=201 Identities=21% Similarity=0.373 Sum_probs=133.5
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccch--hhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK--HAV 724 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~--~~~ 724 (973)
.+..|+||+.+++.|.+++...+ ....+||+||+|||||++|+++|+.+.+.......-.|..+..- ...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~r--------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNK--------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 46789999999999988887422 12258999999999999999999999654321111122222110 000
Q ss_pred hhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
.-+.+...+..|..+.+.+.+.+.. ..+.|++|||+|.+....++.|+..||+ ....++||++|+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tifILaTt 156 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIFILATT 156 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEEEEEcC
Confidence 0011111122233323344455543 4567999999999999999999999997 234677777775
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
. ...+.+.+++|| ..+.|.+++.+++...+...+.+ .| +.
T Consensus 157 e------------------------------~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~k-------eg--I~ 196 (725)
T PRK07133 157 E------------------------------VHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEK-------EN--IS 196 (725)
T ss_pred C------------------------------hhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHH-------cC--CC
Confidence 4 123566799999 68999999999999988876643 33 67
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
+++++++.|+..+- .+.|...+.+++
T Consensus 197 id~eAl~~LA~lS~---GslR~AlslLek 222 (725)
T PRK07133 197 YEKNALKLIAKLSS---GSLRDALSIAEQ 222 (725)
T ss_pred CCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 88999999888532 224555555444
No 207
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=2e-13 Score=154.42 Aligned_cols=172 Identities=17% Similarity=0.326 Sum_probs=112.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCC-CceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccch----
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHR-PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK---- 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~-p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~---- 721 (973)
.|+.|+||+.+++.|.+++...+.......+ ....+||+||+|+|||++|+.+|+.+.+.... ...|+....-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHh
Confidence 3678999999999999999865432221112 22369999999999999999999998654321 1123222100
Q ss_pred ---hhhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 722 ---HAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 722 ---~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
|..-.++.......+.++...+.+.+.. .++.|+||||+|.+.+..+|.|++.||+ ...+++
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~ 149 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTV 149 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCe
Confidence 0000011111111222222334444443 3457999999999999999999999987 224566
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 862 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~ 862 (973)
||++|+. ...+.|.+++|| ..+.|++++.+++.+.+.
T Consensus 150 fIL~a~~------------------------------~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 150 WLLCAPS------------------------------PEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEEECC------------------------------hHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 6666665 223568899999 899999999999877776
No 208
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.50 E-value=2.2e-13 Score=154.96 Aligned_cols=205 Identities=21% Similarity=0.346 Sum_probs=133.4
Q ss_pred hhccccccchHHHHHHHHHHHHHHc--------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRA--------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
..+..+.|.+..++.|...+..... |.. .|. .+||+||||||||++|+++|+.+ ..+++.+.+++
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~---~p~-gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~ 191 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE---PPK-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE 191 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC---CCc-eEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHH
Confidence 3467899999999999988754311 222 233 69999999999999999999988 56788887665
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHhhcCCeEecCCCc
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
+... .+|..... ...++...+...++||||||+|.+ ++.++..+.+++..-.-.+
T Consensus 192 l~~~-----~~g~~~~~-----i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~---- 257 (364)
T TIGR01242 192 LVRK-----YIGEGARL-----VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD---- 257 (364)
T ss_pred HHHH-----hhhHHHHH-----HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC----
Confidence 5322 22221111 123444555566789999999987 3456666666664310000
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...++.||+|||. ...++|+++ +|||..|.|++|+.++..+|++.+
T Consensus 258 --~~~~v~vI~ttn~------------------------------~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 258 --PRGNVKVIAATNR------------------------------PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred --CCCCEEEEEecCC------------------------------hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHH
Confidence 1246889999997 123556666 599999999999999999999876
Q ss_pred HHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
+.. ....-.++ ++.|+.. ...|..+.++.++..+...++
T Consensus 306 ~~~-------~~l~~~~~---~~~la~~--t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 306 TRK-------MKLAEDVD---LEAIAKM--TEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred Hhc-------CCCCccCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 532 11111122 3445553 334667778777766554443
No 209
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3.5e-13 Score=159.92 Aligned_cols=198 Identities=21% Similarity=0.370 Sum_probs=133.1
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc------cc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~ 720 (973)
.+.+++||+++++.+.+.+...+ ....+||+||+|||||++|+.+|+.+.+...+ -...|+.+ ..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK--------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-DGEPCNECEICKAITN 84 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCccHHHHHHhc
Confidence 46789999999999988887422 22258999999999999999999999653211 01122222 11
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. ++-.+-+ ....|.+..+.+.+.+. .+.+.|+||||+|++....++.|+..+++ ...+++
T Consensus 85 g~~~dv~eida--as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~i 151 (559)
T PRK05563 85 GSLMDVIEIDA--ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHVI 151 (559)
T ss_pred CCCCCeEEeec--cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCeE
Confidence 10 0000000 01122222233444444 34468999999999999999999999987 235678
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++|+. ...+.+.+++|+ ..+.|.+++.+++...+...+.+
T Consensus 152 fIlatt~------------------------------~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~------- 193 (559)
T PRK05563 152 FILATTE------------------------------PHKIPATILSRC-QRFDFKRISVEDIVERLKYILDK------- 193 (559)
T ss_pred EEEEeCC------------------------------hhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHH-------
Confidence 8887764 223567889999 67999999999999988877643
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.+++++++.|+..+ . .+.|...+.+++
T Consensus 194 e--gi~i~~~al~~ia~~s-~--G~~R~al~~Ldq 223 (559)
T PRK05563 194 E--GIEYEDEALRLIARAA-E--GGMRDALSILDQ 223 (559)
T ss_pred c--CCCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 3 3578999999999853 2 345665555554
No 210
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.2e-13 Score=159.95 Aligned_cols=165 Identities=27% Similarity=0.416 Sum_probs=127.3
Q ss_pred hccccccchHHHHHHHHHHHHH-------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRS-------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~-------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
.+++|.|.+++++.|.+.+... +.|..-| . .+||+||||||||.||+++|-+. +-||+.++.++|.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiP---k-GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFv 381 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIP---K-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFV 381 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCc---C-ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHH
Confidence 4688999999999988887532 3343333 3 59999999999999999999988 8999999999997
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC---------------HHHHHHHHHhhcCCeEecCC
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH---------------SDVFNVFLQILDDGRVTDSQ 784 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~---------------~~v~~~Ll~~le~g~~~~~~ 784 (973)
+.. .| +|....+.++...+...++|+|+||||... ...+|+||.-||.-.
T Consensus 382 E~~-----~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~----- 446 (774)
T KOG0731|consen 382 EMF-----VG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE----- 446 (774)
T ss_pred HHh-----cc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc-----
Confidence 642 22 222233577888888889999999999654 236788888887421
Q ss_pred CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHH
Q 002068 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVR 862 (973)
Q Consensus 785 g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~ 862 (973)
...+++|+++||. .+.++++|+ +|||..|....++.....+|+.
T Consensus 447 ----~~~~vi~~a~tnr------------------------------~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 447 ----TSKGVIVLAATNR------------------------------PDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred ----CCCcEEEEeccCC------------------------------ccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 1157899999997 233566666 9999999999999999999999
Q ss_pred HHHHH
Q 002068 863 LQLDR 867 (973)
Q Consensus 863 ~~l~~ 867 (973)
.++..
T Consensus 493 ~h~~~ 497 (774)
T KOG0731|consen 493 VHLRK 497 (774)
T ss_pred HHhhc
Confidence 88854
No 211
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.50 E-value=7.3e-14 Score=159.84 Aligned_cols=202 Identities=23% Similarity=0.406 Sum_probs=144.2
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC----cceEE-eccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~----~~~~~-i~~~~~~~~ 721 (973)
.+.+++||+.++..|.+++...+.. ..+||.||-|||||++||.+|+.+.+.. .|+.. ..|.++...
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEG 85 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcC
Confidence 4677899999999999999864432 2599999999999999999999996643 22211 112222211
Q ss_pred hhhhhhcC-CCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 722 HAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 722 ~~~~~l~G-~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
. ..+++- ......|.++.+.+.+.+. ...+.|++|||+|+++...+|.||..+|+ ...+++||
T Consensus 86 ~-~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FI 153 (515)
T COG2812 86 S-LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFI 153 (515)
T ss_pred C-cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEE
Confidence 0 011110 0112234444455555555 34578999999999999999999999998 66789988
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRK 876 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~ 876 (973)
++|.- ...+++.+++|| ..+.|..++.+++..-+...+.. .
T Consensus 154 lATTe------------------------------~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~-------E- 194 (515)
T COG2812 154 LATTE------------------------------PQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDK-------E- 194 (515)
T ss_pred EecCC------------------------------cCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHh-------c-
Confidence 87765 345788899999 78999999999988888877743 3
Q ss_pred CceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 877 MKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 877 ~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.+.++++++.+|++.+ ..|.|..-..+.+.+
T Consensus 195 -~I~~e~~aL~~ia~~a---~Gs~RDalslLDq~i 225 (515)
T COG2812 195 -GINIEEDALSLIARAA---EGSLRDALSLLDQAI 225 (515)
T ss_pred -CCccCHHHHHHHHHHc---CCChhhHHHHHHHHH
Confidence 5789999999999863 344677666666544
No 212
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=4.6e-13 Score=148.42 Aligned_cols=108 Identities=25% Similarity=0.353 Sum_probs=79.4
Q ss_pred CCeEEEEccccccccCCCCC----chhhHHHHHhhhhcC------------CCEEEEEccCchHHHhhhccCHHHHccCc
Q 002068 348 GQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ 411 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------g~i~iI~at~~~~~~~~~~~d~al~~Rf~ 411 (973)
..+|+||||||.+...+.+. +..-+++.|+++++. .+|.+|++....... --.+-|.|.-||.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAK-PSDLIPELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCccc
Confidence 45799999999999654221 234477888888863 478899987644211 1135699999997
Q ss_pred -eEEecCCCHHHHHHHH----HHHHHHHhh---hcC--CccCHHHHHHHHHhccc
Q 002068 412 -QVYVDQPNVEDTISIL----RGLRERYEL---HHG--VRISDSALVEAAILSDR 456 (973)
Q Consensus 412 -~i~~~~p~~~e~~~il----~~~~~~~~~---~~~--v~i~~~~l~~l~~~s~~ 456 (973)
.+.+..++.++...|| ..+.++|.. ..+ +.|+++++..+++.+..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 6799999999999999 457676653 233 56899999999998863
No 213
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=3.2e-13 Score=163.17 Aligned_cols=227 Identities=19% Similarity=0.271 Sum_probs=142.9
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc----------------------
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF---------------------- 704 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~---------------------- 704 (973)
.+..|+||+.++..+...... | ..+++||.||+|||||++|++|++.+-
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------~--~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~ 72 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------P--RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCE 72 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------C--CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccCh
Confidence 356899999988777544331 2 135799999999999999999999982
Q ss_pred ----------CCCcceEEeccccccchhhhhhhcCCCCC----cccccccchhhHHHHhCCCeEEEEccccccCHHHHHH
Q 002068 705 ----------NTEEALVRIDMSEYMEKHAVSRLIGAPPG----YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNV 770 (973)
Q Consensus 705 ----------~~~~~~~~i~~~~~~~~~~~~~l~G~~~g----~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~ 770 (973)
....||+.+.++. +...++|...- ..|.. ..-.+.+..+.++|||||||+.+++.+|+.
T Consensus 73 ~~~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~ 145 (633)
T TIGR02442 73 ECRRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDV 145 (633)
T ss_pred hhhhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHH
Confidence 0123455544432 22345553200 00100 011345567788999999999999999999
Q ss_pred HHHhhcCCeEecCC-CcEEec-cCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEE
Q 002068 771 FLQILDDGRVTDSQ-GRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIV 848 (973)
Q Consensus 771 Ll~~le~g~~~~~~-g~~v~~-~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~ 848 (973)
|+++|++|.++... |....+ .++++|+|+|+. ...|+++|++||+..|.
T Consensus 146 Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~-----------------------------eg~l~~~L~dR~~l~i~ 196 (633)
T TIGR02442 146 LLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPE-----------------------------EGDLRPQLLDRFGLCVD 196 (633)
T ss_pred HHHHHhcCCEEEEECCceeeecCCeEEEEecCCC-----------------------------CCCCCHHHHhhcceEEE
Confidence 99999999654322 443444 488999999972 12378899999998888
Q ss_pred cCCCC-HHHHHHHHHHHHH-----------------HHHHH---HHhcCCceecCHHHHHHHHhcCCCCCC-CccHHHHH
Q 002068 849 FQPLD-RDQISSIVRLQLD-----------------RVQKR---IADRKMKMQVTDAAIQLLGSLGYDPNY-GARPVKRV 906 (973)
Q Consensus 849 f~~l~-~~~l~~I~~~~l~-----------------~~~~~---~~~~~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~r~ 906 (973)
+.++. .++..+++...+. .+... ....--.+.++++++++|+......+. |.|....+
T Consensus 197 v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~ 276 (633)
T TIGR02442 197 VAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVM 276 (633)
T ss_pred ccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 87765 4555666654322 01111 111112478899999999987554443 44544333
Q ss_pred HHHHHHHHHHHHHHcC
Q 002068 907 IQQYVENELAKGILRG 922 (973)
Q Consensus 907 i~~~i~~~la~~~l~~ 922 (973)
+.-+-+.+.+.|
T Consensus 277 ----~r~Ara~AaL~g 288 (633)
T TIGR02442 277 ----ARAARALAALDG 288 (633)
T ss_pred ----HHHHHHHHHHcC
Confidence 333334444444
No 214
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.5e-13 Score=163.73 Aligned_cols=199 Identities=23% Similarity=0.359 Sum_probs=132.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceE-Eeccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~ 721 (973)
-+++|+||+++++.|.+.+... +....+||+||+|+|||++|+++++.+++... ++- .-.|..+...
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEG 85 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcC
Confidence 4678999999999998888642 12225799999999999999999999965321 110 0112221111
Q ss_pred hhh--hhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 722 HAV--SRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 722 ~~~--~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
... ..+-|. +..|.++.+.+.+.+. ...+.|+||||+|+++...+|.|+..||+ ...+++|
T Consensus 86 ~~~d~~eid~~--s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~~~f 152 (576)
T PRK14965 86 RSVDVFEIDGA--SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPHVKF 152 (576)
T ss_pred CCCCeeeeecc--CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCCeEE
Confidence 111 011111 1122222233444443 24467999999999999999999999997 3457888
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++||. ...+.+.+++|| ..+.|.+++.+++...+...+.+ .
T Consensus 153 Il~t~~------------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~-------e 194 (576)
T PRK14965 153 IFATTE------------------------------PHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQ-------E 194 (576)
T ss_pred EEEeCC------------------------------hhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHH-------h
Confidence 888875 123456789999 78999999999998888776643 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+.++++++.+|+..+- .+.|...+.+++
T Consensus 195 --gi~i~~~al~~la~~a~---G~lr~al~~Ldq 223 (576)
T PRK14965 195 --GISISDAALALVARKGD---GSMRDSLSTLDQ 223 (576)
T ss_pred --CCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 36789999999988632 235555555544
No 215
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=9.8e-14 Score=153.79 Aligned_cols=182 Identities=19% Similarity=0.301 Sum_probs=119.2
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC-Ccce------EEecc-----
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-EEAL------VRIDM----- 715 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~~------~~i~~----- 715 (973)
+.+|+||+.+++.+.-+ .+|.+ ++||+||||||||++|+.+...+-.- ...+ ..++.
T Consensus 178 ~~DV~GQ~~AKrAleiA----AAGgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~ 246 (490)
T COG0606 178 FKDVKGQEQAKRALEIA----AAGGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEG 246 (490)
T ss_pred hhhhcCcHHHHHHHHHH----HhcCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccccc
Confidence 47899999999887544 44544 79999999999999999999877210 0000 01110
Q ss_pred ------ccccchh---hhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-C
Q 002068 716 ------SEYMEKH---AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-G 785 (973)
Q Consensus 716 ------~~~~~~~---~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g 785 (973)
.-|..+| +...++|.. +....+.+..++++||||||+-.....+++.|.+.||+|+++.+. +
T Consensus 247 ~~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 247 CPLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred CccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcC
Confidence 1111111 112233321 123345677889999999999999999999999999999988876 5
Q ss_pred cEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHH
Q 002068 786 RTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 855 (973)
Q Consensus 786 ~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~ 855 (973)
.++.|+ ++++|+++|++...... .....+.+-.+. ......+++-.|++|||..|..+.++..
T Consensus 319 ~~v~ypa~Fqlv~AmNpcpcG~~~------~~~~~C~c~~~~-~~~Y~~klSgp~lDRiDl~vev~~~~~~ 382 (490)
T COG0606 319 SKVTYPARFQLVAAMNPCPCGNLG------APLRRCPCSPRQ-IKRYLNKLSGPFLDRIDLMVEVPRLSAG 382 (490)
T ss_pred CeeEEeeeeEEhhhcCCCCccCCC------CCCCCcCCCHHH-HHHHHHHhhHHHHhhhhheecccCCCHH
Confidence 667776 99999999997532221 111111111111 1123455677899999999999988733
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=4.7e-13 Score=142.41 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=120.5
Q ss_pred CCCCCC-CchH-HHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccc
Q 002068 253 KLDPVI-GRDD-EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (973)
Q Consensus 253 ~l~~ii-G~~~-~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g 330 (973)
+|++++ |.+. .+..+.+.......++++|+||||||||+|++++++.+... +..+..+++.....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 455555 5333 33333333334445688999999999999999999987432 44566655543221
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccC
Q 002068 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 410 (973)
Q Consensus 331 ~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf 410 (973)
...++++.+... -+|+|||+|.+.+.. .......+++....++|+..+|+|++.++. ..-...|.|++||
T Consensus 87 ----~~~~~~~~~~~~---dlliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~SRl 156 (235)
T PRK08084 87 ----FVPEVLEGMEQL---SLVCIDNIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLASRL 156 (235)
T ss_pred ----hhHHHHHHhhhC---CEEEEeChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHHHH
Confidence 112233333222 389999999986432 123445677888888888777777775542 2223579999999
Q ss_pred ---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 411 ---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 411 ---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
..+.+.+|+.+++.++++..... .++.++++++++++..+.+-
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCC
Confidence 57899999999999998765542 57999999999999888643
No 217
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.49 E-value=3.2e-13 Score=154.05 Aligned_cols=167 Identities=25% Similarity=0.408 Sum_probs=115.4
Q ss_pred hccccccchHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-+.+|.|.+..++.|.+.+.... .|.. .|. .+||+||||||||++|+++|+.+ ..+|+.+.++++
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~---~p~-gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL 253 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK---PPK-GVILYGPPGTGKTLLAKAVANET---SATFLRVVGSEL 253 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC---CCc-EEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchh
Confidence 35678999999999999886421 1222 223 69999999999999999999988 577888887776
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
... ++|..... ...++..+....++||||||||.+. .+++..++++|..-. |.
T Consensus 254 ~~k-----~~Ge~~~~-----vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld-----g~- 317 (438)
T PTZ00361 254 IQK-----YLGDGPKL-----VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD-----GF- 317 (438)
T ss_pred hhh-----hcchHHHH-----HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh-----hh-
Confidence 432 22322111 1234555566677999999999763 234555555553200 00
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
....++.||++||. ...++|+++ +|||..|.|++|+.++..+|+..++
T Consensus 318 ~~~~~V~VI~ATNr------------------------------~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 318 DSRGDVKVIMATNR------------------------------IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred cccCCeEEEEecCC------------------------------hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 01236789999997 223566666 6999999999999999999999776
Q ss_pred H
Q 002068 866 D 866 (973)
Q Consensus 866 ~ 866 (973)
.
T Consensus 368 ~ 368 (438)
T PTZ00361 368 S 368 (438)
T ss_pred h
Confidence 4
No 218
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=3.8e-13 Score=152.25 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=121.0
Q ss_pred CCCCCCCchHHHHHHHHHhccCC----------CCCceEECCCCCcHHHHHHHHHHHHhcCCCC--cc-----------c
Q 002068 253 KLDPVIGRDDEIRRCIQILSRRT----------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QA-----------L 309 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~~----------~~~~LL~GppG~GKT~la~~la~~l~~~~~p--~~-----------l 309 (973)
.|++|+|++..++.+.+.+.... ++.+||+||||+|||++|+.+|+.+.+.+.. .. .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47889999999999888886643 4558899999999999999999998664311 00 0
Q ss_pred CCCeEEEEEcccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC---C
Q 002068 310 MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---G 383 (973)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g 383 (973)
.+-.++.+..... . -..+.++.+++.+... ++..|+||||+|.|. ...+|.|+..++. +
T Consensus 83 ~hpD~~~i~~~~~-----~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEGL-----S--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------ERAANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEeccccc-----c--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------HHHHHHHHHHhhcCCCC
Confidence 0112333322111 1 1123466777766542 345699999999997 4567888888885 4
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
.+.|++|++ .. .+.|+++|||+.+.|+.|+.++..+.|.. . . .++++....++.++.+.
T Consensus 148 ~~fIL~a~~-~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~----~--~~~~~~a~~la~~s~G~ 206 (394)
T PRK07940 148 TVWLLCAPS-PE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R----D--GVDPETARRAARASQGH 206 (394)
T ss_pred CeEEEEECC-hH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h----c--CCCHHHHHHHHHHcCCC
Confidence 445555555 43 58899999999999999999997766651 1 1 25777788888888754
No 219
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=4.1e-13 Score=148.87 Aligned_cols=108 Identities=24% Similarity=0.349 Sum_probs=79.7
Q ss_pred CCeEEEEccccccccCCCCC----chhhHHHHHhhhhcC------------CCEEEEEccCchHHHhhhccCHHHHccCc
Q 002068 348 GQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ 411 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------g~i~iI~at~~~~~~~~~~~d~al~~Rf~ 411 (973)
..+|+||||||.+.....+. +..-+++.|+++++. .+|.+|++.....- +--.+-|.|.-||.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence 45699999999999654321 224467788888863 57889998764321 11245699999998
Q ss_pred -eEEecCCCHHHHHHHH----HHHHHHHhhh---c--CCccCHHHHHHHHHhccc
Q 002068 412 -QVYVDQPNVEDTISIL----RGLRERYELH---H--GVRISDSALVEAAILSDR 456 (973)
Q Consensus 412 -~i~~~~p~~~e~~~il----~~~~~~~~~~---~--~v~i~~~~l~~l~~~s~~ 456 (973)
.+.+..++.++...|| ..+.++|... . .+.|++++++.+++.+..
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 6789999999999999 5577766632 2 357899999999999864
No 220
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3.6e-13 Score=156.35 Aligned_cols=198 Identities=17% Similarity=0.338 Sum_probs=130.6
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcc----e-EEeccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA----L-VRIDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~----~-~~i~~~~~~~~ 721 (973)
-+.+++||+.++..+...+...+ -...+||+||+|+|||++|+++++.+.+...+ + ..-+|..+.+.
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr--------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~ 83 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR--------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALEN 83 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC--------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhc
Confidence 35789999999999988886321 11247999999999999999999999653211 1 01111111111
Q ss_pred hhhhhhcCCCCCcccccccchhhHHHHh-------CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 722 HAVSRLIGAPPGYVGYEEGGQLTEVVRR-------RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 722 ~~~~~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
....-+.+......|.+ .+.+.+.. +++.|++|||+|.++.+.++.|+..||+ ...++.
T Consensus 84 ~h~dv~eldaas~~gId---~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~~t~ 149 (535)
T PRK08451 84 RHIDIIEMDAASNRGID---DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPSYVK 149 (535)
T ss_pred CCCeEEEeccccccCHH---HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCCceE
Confidence 00000011111111222 23333322 3467999999999999999999999997 335677
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++++. ...+.|.+.+|+ ..+.|.|++.+++...+...+..
T Consensus 150 FIL~ttd------------------------------~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~------- 191 (535)
T PRK08451 150 FILATTD------------------------------PLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEK------- 191 (535)
T ss_pred EEEEECC------------------------------hhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH-------
Confidence 8888865 223567899998 78999999999998888776643
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.| +.++++++++|+..+- .+.|.+.+.+++
T Consensus 192 EG--i~i~~~Al~~Ia~~s~---GdlR~alnlLdq 221 (535)
T PRK08451 192 EG--VSYEPEALEILARSGN---GSLRDTLTLLDQ 221 (535)
T ss_pred cC--CCCCHHHHHHHHHHcC---CcHHHHHHHHHH
Confidence 34 5789999999998632 235655555554
No 221
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=2.5e-13 Score=160.96 Aligned_cols=202 Identities=20% Similarity=0.304 Sum_probs=134.3
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc-----ceEE-----eccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-----ALVR-----IDMS 716 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~-----~~~~-----i~~~ 716 (973)
.+.+|+||+.+++.|.+.+...+ ....+||+||+|+|||++|+++|+.+++... +.+. -+|.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr--------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR--------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 45789999999999999887422 1236999999999999999999999965321 1100 1111
Q ss_pred cccchhhhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 717 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
.+.+.....-+.-.+.+..|.++.+.+.+.+.. +.+.|+||||+|.++...+|.|+..|++ ...+
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-----------Pp~~ 162 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPH 162 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------CCCC
Confidence 111111000000011123333333344444443 3468999999999999999999999997 3356
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI 872 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~ 872 (973)
++||++++. ...+.+.+.+|| ..+.|.+++.+++...+...+.+
T Consensus 163 ~~fIl~tte------------------------------~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~k----- 206 (598)
T PRK09111 163 VKFIFATTE------------------------------IRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAK----- 206 (598)
T ss_pred eEEEEEeCC------------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH-----
Confidence 778887764 112345688999 78999999999999998887743
Q ss_pred HhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 873 ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
. .+.++++++++|+...- .+.|.+.+.+++.
T Consensus 207 --e--gi~i~~eAl~lIa~~a~---Gdlr~al~~Ldkl 237 (598)
T PRK09111 207 --E--GVEVEDEALALIARAAE---GSVRDGLSLLDQA 237 (598)
T ss_pred --c--CCCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3 46789999999998532 2355555555543
No 222
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6e-13 Score=155.34 Aligned_cols=199 Identities=24% Similarity=0.329 Sum_probs=131.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh-
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS- 725 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~- 725 (973)
.+++|+||++++..|...+...+ ....+||+||||||||++|+++|+.+.+.+. . ...|.....-..+.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~--------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~-~-~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR--------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGE-D-PKPCGECESCLAVRR 81 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHHhccCC-C-CCCCCcChhhHHHhc
Confidence 35789999999999988877422 1124699999999999999999999964221 1 01122111000000
Q ss_pred ------hhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 726 ------RLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 726 ------~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
..++. .+..+......+.+.+.. ..+.||||||+|.+....++.|+..|++ ...+++|
T Consensus 82 ~~h~dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t~~ 149 (504)
T PRK14963 82 GAHPDVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHVIF 149 (504)
T ss_pred CCCCceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCEEE
Confidence 00110 111122222233333332 3457999999999999999999999987 2346778
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|+++|. ...+.+.+.+|+ ..+.|.+++.+++...+...+.+ .
T Consensus 150 Il~t~~------------------------------~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~-------e 191 (504)
T PRK14963 150 ILATTE------------------------------PEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA-------E 191 (504)
T ss_pred EEEcCC------------------------------hhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHH-------c
Confidence 887765 223567788999 68999999999999999887743 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
| +.++++++++|+... . ...|.+.+.+++.
T Consensus 192 g--i~i~~~Al~~ia~~s-~--GdlR~aln~Lekl 221 (504)
T PRK14963 192 G--REAEPEALQLVARLA-D--GAMRDAESLLERL 221 (504)
T ss_pred C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 4 567999999999853 2 2356555555553
No 223
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=7.1e-13 Score=143.42 Aligned_cols=164 Identities=21% Similarity=0.332 Sum_probs=113.4
Q ss_pred HHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHH----H-HHH
Q 002068 263 EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE----D-RLK 337 (973)
Q Consensus 263 ~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e----~-~l~ 337 (973)
.+++++..+. ...++||+||||||||++|+.+|+.+ +.+++.+++..-.......|... . ...
T Consensus 10 l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~ 77 (262)
T TIGR02640 10 VTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHD 77 (262)
T ss_pred HHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHH
Confidence 3444555443 34589999999999999999999987 78888887654322111111110 0 000
Q ss_pred H-------------------HHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------
Q 002068 338 A-------------------VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------- 383 (973)
Q Consensus 338 ~-------------------~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------- 383 (973)
. .+-.+. ..+.+|+|||++.+. .++++.|..+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~l~~A~--~~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~ 147 (262)
T TIGR02640 78 QFIHNVVKLEDIVRQNWVDNRLTLAV--REGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVD 147 (262)
T ss_pred HHHHHhhhhhcccceeecCchHHHHH--HcCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEe
Confidence 0 111121 234699999999986 56888888888643
Q ss_pred ---CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 384 ---ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 384 ---~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
++++|+|+|...|......+++|.+||..+.++.|+.++..+|++... .++++.++.++++....
T Consensus 148 ~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~ 215 (262)
T TIGR02640 148 VHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREF 215 (262)
T ss_pred cCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHH
Confidence 467999999987766556789999999999999999999888886432 35677777777776543
No 224
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.48 E-value=1.1e-12 Score=146.65 Aligned_cols=177 Identities=16% Similarity=0.218 Sum_probs=128.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
..+++||++++..+...+.. + +....+||+||||+|||++|+++++.+ +.+++.+++++ ........
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~---~-----~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~~- 86 (316)
T PHA02544 20 IDECILPAADKETFKSIVKK---G-----RIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVRN- 86 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhc---C-----CCCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHHH-
Confidence 36789999999888777762 1 111256669999999999999999988 46678888875 11110000
Q ss_pred cCCCCCcccccccchhhHHHH----hCCCeEEEEcccccc-CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCC
Q 002068 728 IGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (973)
Q Consensus 728 ~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l-~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 802 (973)
.+.+... ...+.||+|||+|.+ ..+.++.|..+++.. ..++.||+|+|.
T Consensus 87 --------------~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-----------~~~~~~Ilt~n~- 140 (316)
T PHA02544 87 --------------RLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-----------SKNCSFIITANN- 140 (316)
T ss_pred --------------HHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-----------CCCceEEEEcCC-
Confidence 1111111 135679999999999 677888888888851 246789999986
Q ss_pred hhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 002068 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVT 882 (973)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~ 882 (973)
...+.|.+.+|| ..+.|++++.++...++...+.++...+...| +.++
T Consensus 141 -----------------------------~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~--~~i~ 188 (316)
T PHA02544 141 -----------------------------KNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG--VEVD 188 (316)
T ss_pred -----------------------------hhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCC
Confidence 223567889999 68999999999999998888777766555554 5679
Q ss_pred HHHHHHHHhcCCC
Q 002068 883 DAAIQLLGSLGYD 895 (973)
Q Consensus 883 ~~a~~~L~~~~~~ 895 (973)
++++.+|++..|.
T Consensus 189 ~~al~~l~~~~~~ 201 (316)
T PHA02544 189 MKVLAALVKKNFP 201 (316)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987664
No 225
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.48 E-value=1.5e-12 Score=137.69 Aligned_cols=103 Identities=22% Similarity=0.443 Sum_probs=82.5
Q ss_pred CeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHH
Q 002068 752 YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (973)
Q Consensus 752 ~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 831 (973)
++||||||++.++-+.+..|.++|++ ++ -.++|++||.|-..+....-..
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEs-----------e~-aPIii~AtNRG~~kiRGTd~~s------------------ 341 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALES-----------EL-APIIILATNRGMTKIRGTDIES------------------ 341 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhc-----------cc-CcEEEEEcCCceeeecccCCcC------------------
Confidence 57999999999999999999999997 22 3578999999865543321111
Q ss_pred HhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCC
Q 002068 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGY 894 (973)
Q Consensus 832 ~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~ 894 (973)
...++.+|++|+ .+|...||+.++++.|++..... . .+.++++|+++|++.+-
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~e-------e--~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKE-------E--DIELSDDALEYLTDIGE 394 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhh-------h--ccccCHHHHHHHHhhch
Confidence 234788999999 89999999999999999986643 2 58899999999999643
No 226
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.48 E-value=7.3e-13 Score=149.72 Aligned_cols=197 Identities=17% Similarity=0.355 Sum_probs=130.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC--cceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~--~~~~~i~~~~~~~~~~~~ 725 (973)
+..++|++++++.+...+.. +.. .+++|+||||||||++|+++++.+++.. .+++.++++++.....
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~-------~~~--~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~-- 82 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS-------PNL--PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK-- 82 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC-------CCC--ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--
Confidence 46788999999888777652 111 2699999999999999999999997543 4678889887642210
Q ss_pred hhcCCCCCcc---------cccccchhhHHHH--------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEE
Q 002068 726 RLIGAPPGYV---------GYEEGGQLTEVVR--------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 726 ~l~G~~~g~~---------g~~~~~~l~~~~~--------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
..++..+.+. +......+.+.+. ..+..||+|||+|.+++..++.|+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~---------- 152 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY---------- 152 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc----------
Confidence 0111111110 0000111222211 134579999999999999999999999852
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRV 868 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~ 868 (973)
..++.||++++.. ..+.+.+.+|+ ..+.|.|++.+++..++...+..
T Consensus 153 -~~~~~~Il~~~~~------------------------------~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~- 199 (337)
T PRK12402 153 -SRTCRFIIATRQP------------------------------SKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEA- 199 (337)
T ss_pred -cCCCeEEEEeCCh------------------------------hhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHH-
Confidence 1245677776641 11345677888 68999999999998888876643
Q ss_pred HHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 869 QKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 869 ~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.| +.++++++++|+... .+ +.|.+.+.++.
T Consensus 200 ------~~--~~~~~~al~~l~~~~-~g--dlr~l~~~l~~ 229 (337)
T PRK12402 200 ------EG--VDYDDDGLELIAYYA-GG--DLRKAILTLQT 229 (337)
T ss_pred ------cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 33 568999999999964 33 35665555543
No 227
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=1.1e-12 Score=149.10 Aligned_cols=187 Identities=26% Similarity=0.330 Sum_probs=125.4
Q ss_pred CCCchHHHHHHHHHhc----c------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 257 VIGRDDEIRRCIQILS----R------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 257 iiG~~~~i~~li~~l~----~------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
||||+..++.+...+. + ....|+||+||||||||++|+.+|+.+ +.+++.+|++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 8999998887755431 1 134689999999999999999999998 8899999988
Q ss_pred cccccccccchH-HHHHHHHHHHH---HHhCCCeEEEEccccccccCCCCC------chhhHHHHHhhhhcCC-------
Q 002068 321 ALIAGAKYRGEF-EDRLKAVLKEV---TESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGRG------- 383 (973)
Q Consensus 321 ~~~~g~~~~g~~-e~~l~~~~~~~---~~~~~~~ILfiDEi~~l~~~~~~~------~~~~~~~~L~~~l~~g------- 383 (973)
.+.. ..|.|.. +..+..++... .....++||||||||.+...+.+. +...+++.|+.+|+..
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 7643 3477753 33344443321 112356899999999998653211 2235778888888621
Q ss_pred --------CEEEEEccCc--------h-------------------------------HHHh--------hhccCHHHHc
Q 002068 384 --------ELRCIGATTL--------D-------------------------------EYRK--------YIEKDPALER 408 (973)
Q Consensus 384 --------~i~iI~at~~--------~-------------------------------~~~~--------~~~~d~al~~ 408 (973)
+.++|.|+|. . .+.+ .+.+.|+|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 1233444333 0 0000 1124699999
Q ss_pred cCc-eEEecCCCHHHHHHHHH----HHHHHHhh---h--cCCccCHHHHHHHHHhc
Q 002068 409 RFQ-QVYVDQPNVEDTISILR----GLRERYEL---H--HGVRISDSALVEAAILS 454 (973)
Q Consensus 409 Rf~-~i~~~~p~~~e~~~il~----~~~~~~~~---~--~~v~i~~~~l~~l~~~s 454 (973)
|++ .+.|.+.+.++..+|+. .+.+++.. . ..+.++++++.++++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 998 46777889999999996 45554432 2 24568999999999874
No 228
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=3.8e-13 Score=156.50 Aligned_cols=200 Identities=22% Similarity=0.374 Sum_probs=130.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC----cceE-Eeccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~----~~~~-~i~~~~~~~~ 721 (973)
.+..++||+.++..+.+.+...+ ....+||+||+|+|||++|+++|+.+++.. .|+. ..+|..+...
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~--------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR--------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKG 85 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcC
Confidence 35689999999999988886421 222478999999999999999999996421 1111 1122222111
Q ss_pred hh--hhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 722 HA--VSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 722 ~~--~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
.. +..+-+ ....|.+..+.+.+.+.. +.+.|++|||+|++....++.|+..|++ ...+++|
T Consensus 86 ~~~d~~eida--as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~~~v~ 152 (486)
T PRK14953 86 SFPDLIEIDA--ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPPRTIF 152 (486)
T ss_pred CCCcEEEEeC--ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEE
Confidence 10 000111 111222222344444443 3457999999999999999999999987 2345677
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++|+. ...+.+.+.+|+ ..+.|+|++.+++..++...++. .
T Consensus 153 Il~tt~------------------------------~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~-------e 194 (486)
T PRK14953 153 ILCTTE------------------------------YDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNE-------E 194 (486)
T ss_pred EEEECC------------------------------HHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHH-------c
Confidence 766653 112345688898 68999999999999988877743 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
| +.++++++++|+... . .+.|.+.+.+++.
T Consensus 195 g--i~id~~al~~La~~s-~--G~lr~al~~Ldkl 224 (486)
T PRK14953 195 K--IEYEEKALDLLAQAS-E--GGMRDAASLLDQA 224 (486)
T ss_pred C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 4 578999999999852 2 3356555555543
No 229
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.47 E-value=6.6e-13 Score=162.56 Aligned_cols=184 Identities=18% Similarity=0.279 Sum_probs=130.3
Q ss_pred CCCCchHHHHHHHHHhcc------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-----
Q 002068 256 PVIGRDDEIRRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~----- 324 (973)
+.+|.++..+++++.|.. .....++|+||||||||++++.+|+.+ +.+++.++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhc
Confidence 389999999999876642 233457899999999999999999998 77888888665421
Q ss_pred cc--cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-----------------CCE
Q 002068 325 GA--KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 385 (973)
Q Consensus 325 g~--~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------g~i 385 (973)
|. .|.|....++...+..+.. .+.|+||||+|.+.+... .+..+.|..+++. +++
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~--~~~villDEidk~~~~~~----g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGV--KNPLFLLDEIDKMSSDMR----GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCC--CCCEEEEEChhhcccccC----CCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 21 2445555554444443321 234899999999975432 2345567776653 678
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHH-HHhhh-----cCCccCHHHHHHHHHhcccccC
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRE-RYELH-----HGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~-~~~~~-----~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
.+|+|+|.. .++++|++||..|.+..++.++..+|.+..+. +.... ..+.++++++..+++...+-.+
T Consensus 467 ~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 467 MFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred EEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 899988753 58999999999999999999999999976653 22222 2467999999999864333333
Q ss_pred CC
Q 002068 460 GR 461 (973)
Q Consensus 460 ~r 461 (973)
.|
T Consensus 541 aR 542 (784)
T PRK10787 541 VR 542 (784)
T ss_pred Cc
Confidence 44
No 230
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.47 E-value=8.2e-13 Score=155.00 Aligned_cols=210 Identities=16% Similarity=0.136 Sum_probs=140.1
Q ss_pred CCCCCchHHHHHHHHHhcc----CCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-----
Q 002068 255 DPVIGRDDEIRRCIQILSR----RTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~----~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~----- 324 (973)
+.++||+++++++...|.. ..++++ +++|+||||||++++.+.+.+....--..+....++.+||..+..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4588999999999887632 344455 599999999999999999888432111112246788999854321
Q ss_pred --------cc-cccc-hHHHHHHHHHHHHHHh-CCCeEEEEccccccccCCCCCchhhHHHHHhhh-hcCCCEEEEEccC
Q 002068 325 --------GA-KYRG-EFEDRLKAVLKEVTES-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM-LGRGELRCIGATT 392 (973)
Q Consensus 325 --------g~-~~~g-~~e~~l~~~~~~~~~~-~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~-l~~g~i~iI~at~ 392 (973)
+. ...| .....+..+|..+... ....||+|||||.|.... ...+.+++... ...+++.+||++|
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhccCCeEEEEEecC
Confidence 11 1112 2234455566655332 234699999999998542 12233333321 2356799999999
Q ss_pred chHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHH
Q 002068 393 LDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDL 470 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~l 470 (973)
..++.. .++|.+++||. .|.|++++.+++.+||+..++.. ...+++++++.+++.+...-++ -.+|+++
T Consensus 911 dlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---ARKALDI 981 (1164)
T PTZ00112 911 TMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IRKALQI 981 (1164)
T ss_pred chhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HHHHHHH
Confidence 765433 46789999986 48899999999999998777642 3458999999999866543332 3378888
Q ss_pred HHHHHhh
Q 002068 471 VDEAAAK 477 (973)
Q Consensus 471 ld~a~~~ 477 (973)
+..|+..
T Consensus 982 LRrAgEi 988 (1164)
T PTZ00112 982 CRKAFEN 988 (1164)
T ss_pred HHHHHhh
Confidence 8887753
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.47 E-value=5.3e-12 Score=129.35 Aligned_cols=208 Identities=17% Similarity=0.219 Sum_probs=155.7
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCccc---------CCCeEE
Q 002068 245 LTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL---------MNRKLI 315 (973)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l---------~~~~~~ 315 (973)
|.++|||..|+.++++++.-..+.........+|.++|||+|.||-|.+.++.+.++.-+++..- ++.+ +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk-l 81 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK-L 81 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce-E
Confidence 67899999999999998888888887776778999999999999999999999999775554321 1111 1
Q ss_pred EEEc-cc-c---cccccccch-HHHHHHHHHHHHHHh--------CCCeEEEEccccccccCCCCCchhhHHHHHhhhhc
Q 002068 316 SLDM-GA-L---IAGAKYRGE-FEDRLKAVLKEVTES--------EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG 381 (973)
Q Consensus 316 ~l~~-~~-~---~~g~~~~g~-~e~~l~~~~~~~~~~--------~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~ 381 (973)
+++. ++ + +..+ ..|. ..--+.++++++.+. ..-.+++|-|+|.|+ .|++..|++.++
T Consensus 82 EistvsS~yHlEitPS-DaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------~dAQ~aLRRTME 152 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPS-DAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------RDAQHALRRTME 152 (351)
T ss_pred EEEEecccceEEeChh-hcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh--------HHHHHHHHHHHH
Confidence 1110 00 0 1111 1222 222355666665542 123588999999998 789999999998
Q ss_pred --CCCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 382 --RGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 382 --~g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
.+.+++|..+|... .+-+++++||-.|.++.|+.+|...++..++++ .++.++++.+..+++-|.|-+.
T Consensus 153 kYs~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNLR 223 (351)
T ss_pred HHhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccHH
Confidence 67899999888875 577999999999999999999999999998885 6888999999999999986543
Q ss_pred CCCCchHHHHHHHHHHhh
Q 002068 460 GRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 460 ~r~~p~~a~~lld~a~~~ 477 (973)
+|+=+++.++..
T Consensus 224 ------rAllmlE~~~~~ 235 (351)
T KOG2035|consen 224 ------RALLMLEAVRVN 235 (351)
T ss_pred ------HHHHHHHHHHhc
Confidence 566666655543
No 232
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=5.6e-13 Score=154.25 Aligned_cols=199 Identities=18% Similarity=0.300 Sum_probs=132.2
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc-----ce-EEeccccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-----AL-VRIDMSEYME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~-----~~-~~i~~~~~~~ 720 (973)
-+++|+||+.++..+.+.+...+ ....+||+||+|+|||++|+.+|+.+.+... ++ ...+|..+..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~--------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR--------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 35789999999999888886421 1235899999999999999999999965321 11 1112222221
Q ss_pred hhh--hhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~~--~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
... +..+-|. ...|..+...+.+.+. ...+.|+||||+|.+..+.++.|++.|++ ...+++
T Consensus 87 ~~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~~~~ 153 (451)
T PRK06305 87 GTSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQHVK 153 (451)
T ss_pred CCCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCCCce
Confidence 111 1111121 1222222223333332 25678999999999999999999999997 224667
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||+++|. ...+.+.+.+|+ ..+.|.+++.+++.+.+...+.+
T Consensus 154 ~Il~t~~------------------------------~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~------- 195 (451)
T PRK06305 154 FFLATTE------------------------------IHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQ------- 195 (451)
T ss_pred EEEEeCC------------------------------hHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHH-------
Confidence 8887764 123556789999 78999999999999888776643
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.+++++++.|+... .+ +.|.+.+.+++
T Consensus 196 e--g~~i~~~al~~L~~~s-~g--dlr~a~~~Lek 225 (451)
T PRK06305 196 E--GIETSREALLPIARAA-QG--SLRDAESLYDY 225 (451)
T ss_pred c--CCCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 3 3668999999999863 22 24555555544
No 233
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.46 E-value=5.8e-13 Score=147.42 Aligned_cols=235 Identities=17% Similarity=0.245 Sum_probs=143.6
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-------------CCcceEEe
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------------TEEALVRI 713 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-------------~~~~~~~i 713 (973)
.+..|+||++++..+.-.+-. |. .++++|.|+||+|||+++++++..+.. ....++..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------~~--~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------PK--IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCE 72 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------CC--CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccCh
Confidence 357899999999887554431 21 458999999999999999999988821 01111222
Q ss_pred ccccccc-------------------hhhhhhhcCCCCCcccccccc--hhhHHHHhCCCeEEEEccccccCHHHHHHHH
Q 002068 714 DMSEYME-------------------KHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFL 772 (973)
Q Consensus 714 ~~~~~~~-------------------~~~~~~l~G~~~g~~g~~~~~--~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll 772 (973)
+|....+ ..+..+++|...-......+. .-.+.+.++.++|||+|||+.+++.+|+.|+
T Consensus 73 ~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll 152 (337)
T TIGR02030 73 EVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLL 152 (337)
T ss_pred HHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHH
Confidence 2221100 001112333210000000000 0123455677899999999999999999999
Q ss_pred HhhcCCeEec-CCCcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcC
Q 002068 773 QILDDGRVTD-SQGRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQ 850 (973)
Q Consensus 773 ~~le~g~~~~-~~g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~ 850 (973)
++|++|.++. ..|....++ ++++|+|+|+. ...|+++|++||...+.+.
T Consensus 153 ~~l~~g~~~v~r~G~~~~~~~r~iviat~np~-----------------------------eg~l~~~LldRf~l~i~l~ 203 (337)
T TIGR02030 153 DVAASGWNVVEREGISIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGLHAEIR 203 (337)
T ss_pred HHHHhCCeEEEECCEEEEcCCCEEEEeccccc-----------------------------cCCCCHHHHhhcceEEECC
Confidence 9999986432 224444443 78889998872 2248899999999888888
Q ss_pred CCCH-HHHHHHHHHHHHH----------H-------HHHH---HhcCCceecCHHHHHHHHhcCCCCC-CCccHHHHHHH
Q 002068 851 PLDR-DQISSIVRLQLDR----------V-------QKRI---ADRKMKMQVTDAAIQLLGSLGYDPN-YGARPVKRVIQ 908 (973)
Q Consensus 851 ~l~~-~~l~~I~~~~l~~----------~-------~~~~---~~~~~~l~~~~~a~~~L~~~~~~~~-~gaR~L~r~i~ 908 (973)
++.. ++..+|+...... + .+.+ ...--.+.+++++++|+++....-. -|-| .-.
T Consensus 204 ~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~R----a~i 279 (337)
T TIGR02030 204 TVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLR----GEL 279 (337)
T ss_pred CCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCc----HHH
Confidence 8875 6667777663211 1 1111 1111247799999999988532211 1333 334
Q ss_pred HHHHHHHHHHHHcCC
Q 002068 909 QYVENELAKGILRGE 923 (973)
Q Consensus 909 ~~i~~~la~~~l~~~ 923 (973)
.++.-+-|.++++|+
T Consensus 280 ~l~raArA~Aal~GR 294 (337)
T TIGR02030 280 TLNRAAKALAAFEGR 294 (337)
T ss_pred HHHHHHHHHHHHcCC
Confidence 456667788888875
No 234
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=9.2e-13 Score=153.63 Aligned_cols=198 Identities=19% Similarity=0.302 Sum_probs=131.2
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc------
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------ 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~------ 720 (973)
-+..++||+.++..+.+++...+ ....+||+||+|+|||++|+++|+.+.+....-. -.|+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r--------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK--------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-DCCNSCSVCESINT 84 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCcccHHHHHHHc
Confidence 35789999999999988876321 1125999999999999999999999965322111 11222110
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. +...+-+ .+..|..+.+.+.+.+.. .++.|++|||+|.++...++.|+..|++ ...+++
T Consensus 85 ~~h~DiieIda--as~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~tv 151 (605)
T PRK05896 85 NQSVDIVELDA--ASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKHVV 151 (605)
T ss_pred CCCCceEEecc--ccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCcEE
Confidence 00 0000100 111222222233333332 3467999999999999999999999997 234678
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++|+. ...+.+.+.+|| ..+.|.+++.+++...+...+.+
T Consensus 152 fIL~Tt~------------------------------~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~k------- 193 (605)
T PRK05896 152 FIFATTE------------------------------FQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKK------- 193 (605)
T ss_pred EEEECCC------------------------------hHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHH-------
Confidence 8887765 223566789999 68999999999999988877743
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.+++++++.|+..+- .+.|...+.+++
T Consensus 194 e--gi~Is~eal~~La~lS~---GdlR~AlnlLek 223 (605)
T PRK05896 194 E--KIKIEDNAIDKIADLAD---GSLRDGLSILDQ 223 (605)
T ss_pred c--CCCCCHHHHHHHHHHcC---CcHHHHHHHHHH
Confidence 3 35689999999988632 225555555554
No 235
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.7e-13 Score=157.01 Aligned_cols=200 Identities=19% Similarity=0.283 Sum_probs=129.5
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhh---
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA--- 723 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~--- 723 (973)
-+++++||+.+++.+.+.+...+ ....+||+||+|||||++|+++|+.+++... ...-.|+.+..-..
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR--------LHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVCSACLEIDS 84 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC--------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHhc
Confidence 35789999999999988887422 1124799999999999999999999965321 11112222100000
Q ss_pred --hhhhcC-CCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 724 --VSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 724 --~~~l~G-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
...++. ......+.+....+.+.+.. .++.|+||||+|+++.+.+|.|++.|++ ...+++||
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~fI 153 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFI 153 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEEE
Confidence 000110 00111222222223333332 3457999999999999999999999997 23467777
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRK 876 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~ 876 (973)
++|+. ...+.+.+++|| ..+.|.+++.+++.+.+...+.. .|
T Consensus 154 L~t~d------------------------------~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~-------eg 195 (527)
T PRK14969 154 LATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQ-------EN 195 (527)
T ss_pred EEeCC------------------------------hhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHH-------cC
Confidence 77764 123455688999 88999999999998888776643 33
Q ss_pred CceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 877 MKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 877 ~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
+.++++++.+|+..+ . .+.|...+.+++
T Consensus 196 --i~~~~~al~~la~~s-~--Gslr~al~lldq 223 (527)
T PRK14969 196 --IPFDATALQLLARAA-A--GSMRDALSLLDQ 223 (527)
T ss_pred --CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 668999999999863 2 225555555544
No 236
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.46 E-value=7.6e-13 Score=143.66 Aligned_cols=155 Identities=20% Similarity=0.287 Sum_probs=111.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCC-----Cc--ccccccchhhHHHHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP-----GY--VGYEEGGQLTEVVRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~-----g~--~g~~~~~~l~~~~~~~~~~ 753 (973)
++||.||||||||++|+.+|+.+ +.++++++|+.... ...++|... |. ..+. .+.+..+.+ .+.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~---~~DliG~~~~~l~~g~~~~~f~-~GpL~~A~~--~g~ 136 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVS---RIDLVGKDAIVLKDGKQITEFR-DGILPWALQ--HNV 136 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCC---hhhcCCCceeeccCCcceeEEe-cCcchhHHh--CCe
Confidence 69999999999999999999999 78999999988744 345667532 11 0111 133433333 346
Q ss_pred EEEEccccccCHHHHHHHHHhhc-CCeEecCC-CcEE-eccCEEEEEecCCCh-hhh-hccCCCCCCccchHHHHHHHHH
Q 002068 754 VILFDEIEKAHSDVFNVFLQILD-DGRVTDSQ-GRTV-SFTNTVIIMTSNVGS-QYI-LNMDDETFPKETAYETIKQRVM 828 (973)
Q Consensus 754 Vl~lDEid~l~~~v~~~Ll~~le-~g~~~~~~-g~~v-~~~~~iiI~tsN~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~ 828 (973)
+|++|||+.++|++++.|..+|| +|.++... ++.+ ..+++.+|+|+|+-. ..- ..+.+
T Consensus 137 illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G----------------- 199 (327)
T TIGR01650 137 ALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG----------------- 199 (327)
T ss_pred EEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee-----------------
Confidence 89999999999999999999999 46777644 6666 335899999999721 000 00011
Q ss_pred HHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 829 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 829 ~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...+++++++||-.++.+..++.++-.+|+...
T Consensus 200 ---t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 200 ---TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred ---eecCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 233678999999666789999988888887654
No 237
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.8e-13 Score=140.92 Aligned_cols=206 Identities=19% Similarity=0.322 Sum_probs=139.8
Q ss_pred ccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
|..|.|.+.++++|.+++...-. -+...++|...+||+|||||||+.||+++|.+. +..|+.+..+++.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLv----- 203 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLV----- 203 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHH-----
Confidence 78899999999999998743210 122235666679999999999999999999988 6788888888764
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
++.+|.+...+ .++++..++..++||||||||.+- ..+-..||--|+ |.-. +-..+
T Consensus 204 SKWmGESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GVG~-------d~~gv 270 (439)
T KOG0739|consen 204 SKWMGESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GVGN-------DNDGV 270 (439)
T ss_pred HHHhccHHHHH-----HHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-cccc-------CCCce
Confidence 44566665555 488999999999999999999764 224444444443 2222 23457
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIA 873 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~ 873 (973)
+|+.+||.. -.++.++..||+..|.++-+.......++...+.
T Consensus 271 LVLgATNiP------------------------------w~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG------- 313 (439)
T KOG0739|consen 271 LVLGATNIP------------------------------WVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG------- 313 (439)
T ss_pred EEEecCCCc------------------------------hhHHHHHHHHhhcceeccCCcHHHhhhhheeccC-------
Confidence 788999972 1235577788877788877776666666665552
Q ss_pred hcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 874 DRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 874 ~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
.....+++.-..+|++. ...|+...+.-+++..++.|+
T Consensus 314 --~tp~~LT~~d~~eL~~k--TeGySGsDisivVrDalmePv 351 (439)
T KOG0739|consen 314 --DTPHVLTEQDFKELARK--TEGYSGSDISIVVRDALMEPV 351 (439)
T ss_pred --CCccccchhhHHHHHhh--cCCCCcCceEEEehhhhhhhH
Confidence 23456777777888874 122333334344455554443
No 238
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.4e-13 Score=141.07 Aligned_cols=166 Identities=24% Similarity=0.429 Sum_probs=125.5
Q ss_pred hhccccccchHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.-+..+-|.+..++.|.+++.. -..|...|+ .+++||+||||||.||+++|+.- ...|+++-.++
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGse 254 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSE 254 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHH
Confidence 3456788999999999888842 123444443 68999999999999999999877 67788888777
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCc
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
+.. +.+|..|..+ ++++..+....++|+||||||... .++|..+|.+|..-.--|+
T Consensus 255 LiQ-----kylGdGpklv-----RqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--- 321 (440)
T KOG0726|consen 255 LIQ-----KYLGDGPKLV-----RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--- 321 (440)
T ss_pred HHH-----HHhccchHHH-----HHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc---
Confidence 644 4466655444 477888888889999999999765 4688888888864211122
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
-.++-+||+||. ...++|+|+ +|||..|.|+-++....++|++..
T Consensus 322 ---rgDvKvimATnr------------------------------ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 322 ---RGDVKVIMATNR------------------------------IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred ---cCCeEEEEeccc------------------------------ccccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 136779999997 334677776 899999999999999988887743
No 239
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.45 E-value=7.8e-13 Score=142.82 Aligned_cols=102 Identities=20% Similarity=0.412 Sum_probs=70.5
Q ss_pred CeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHH
Q 002068 752 YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (973)
Q Consensus 752 ~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 831 (973)
++||||||++.++.+.+..|.++||.. + -.++|++||.|...+.......
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-----------~-sPiiIlATNRg~~~irGt~~~s------------------ 328 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-----------L-SPIIILATNRGITKIRGTDIIS------------------ 328 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-----------T---EEEEEES-SEEE-BTTS-EE------------------
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-----------C-CcEEEEecCceeeeccCccCcC------------------
Confidence 579999999999999999999999972 2 3578999998765543321100
Q ss_pred HhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcC
Q 002068 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLG 893 (973)
Q Consensus 832 ~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 893 (973)
...++.+|++|+ .+|...||+.+++.+|+...++. . .+.++++|+++|.+.+
T Consensus 329 phGiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~-------E--~v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 329 PHGIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKE-------E--DVEISEDALDLLTKIG 380 (398)
T ss_dssp ETT--HHHHTTE-EEEEE----HHHHHHHHHHHHHH-------C--T--B-HHHHHHHHHHH
T ss_pred CCCCCcchHhhc-EEEECCCCCHHHHHHHHHhhhhh-------h--cCcCCHHHHHHHHHHh
Confidence 123678999999 99999999999999999987743 3 5889999999999853
No 240
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.6e-12 Score=153.67 Aligned_cols=199 Identities=19% Similarity=0.301 Sum_probs=129.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceEE-eccccccch
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEYMEK 721 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~~-i~~~~~~~~ 721 (973)
-+++|+||+.++..|...+...+ ....+||+||+|+|||++|+++|+.+.+... |+.. -+|..+...
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~--------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK--------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 35789999999999988887422 1225999999999999999999999965321 1110 111111111
Q ss_pred h--hhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 722 H--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 722 ~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
. ++..+-|.. ..+..+...+.+.+. ...+.|++|||+|.++...++.|+..+++ ...+++|
T Consensus 86 ~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~~~vf 152 (563)
T PRK06647 86 NSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPPYIVF 152 (563)
T ss_pred CCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCCCEEE
Confidence 0 000111111 011111112222222 34567999999999999999999999996 3357788
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++++. ...+.+.+.+|+ ..+.|.+++.+++.+.+...+.. .
T Consensus 153 I~~tte------------------------------~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~-------e 194 (563)
T PRK06647 153 IFATTE------------------------------VHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLE-------D 194 (563)
T ss_pred EEecCC------------------------------hHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHH-------c
Confidence 887754 122456789999 68999999999998888765532 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+.++++++++|+... .+ +.|.+.+.+++
T Consensus 195 --gi~id~eAl~lLa~~s-~G--dlR~alslLdk 223 (563)
T PRK06647 195 --QIKYEDEALKWIAYKS-TG--SVRDAYTLFDQ 223 (563)
T ss_pred --CCCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 3678999999999852 22 25655555554
No 241
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=2.9e-12 Score=146.51 Aligned_cols=211 Identities=21% Similarity=0.297 Sum_probs=140.6
Q ss_pred CCCCCchHHHHHHHHHhcc----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc------
Q 002068 255 DPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------ 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~------ 324 (973)
+.++||+++++.+...+.. ..+.+++++||||||||++++.+++.+.... +.......++.+|+.....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCCCCCHHHHHH
Confidence 3589999999999888743 4557899999999999999999999874311 0000125678888754321
Q ss_pred ---------ccc--ccc-hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhh-----hcCCCEEE
Q 002068 325 ---------GAK--YRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM-----LGRGELRC 387 (973)
Q Consensus 325 ---------g~~--~~g-~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~-----l~~g~i~i 387 (973)
|.. ..| ...+.+..+++.+...+.+.||+|||+|.+.+.. .++...|..+ +...++.+
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccccccCCCCCeEEE
Confidence 110 111 1233345555555444557899999999997322 2222233333 12367899
Q ss_pred EEccCchHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
|+++|...+.. .+++.+.+||. .|.|++++.++..+|++..++.. .....+++++++.++..+.+.. ..+.
T Consensus 169 I~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~---Gd~R 241 (365)
T TIGR02928 169 IGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEH---GDAR 241 (365)
T ss_pred EEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhc---CCHH
Confidence 99998876533 47789999995 68999999999999998776521 1233478888888777664322 3456
Q ss_pred HHHHHHHHHHhhh
Q 002068 466 KAIDLVDEAAAKL 478 (973)
Q Consensus 466 ~a~~lld~a~~~~ 478 (973)
++++++..|+..+
T Consensus 242 ~al~~l~~a~~~a 254 (365)
T TIGR02928 242 KAIDLLRVAGEIA 254 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877554
No 242
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.44 E-value=3.2e-13 Score=131.84 Aligned_cols=113 Identities=30% Similarity=0.550 Sum_probs=79.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCC---CcccccccchhhHHHHhCCCeEEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP---GYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~---g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
+|+|+||||||||++|+.+|+.+ +.+++.+.|+...+. ..++|... +...+.+ +.+..+++ .+.|++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc---ccceeeeeeccccccccc-cccccccc--ceeEEEE
Confidence 48999999999999999999999 788999999886544 34455322 1111122 23333333 5579999
Q ss_pred ccccccCHHHHHHHHHhhcCCeEecCC-CcEEecc-------CEEEEEecCCC
Q 002068 758 DEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-------NTVIIMTSNVG 802 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~~-------~~iiI~tsN~~ 802 (973)
|||+++++++++.|+++++++++.... +...... ++.||+|+|..
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 999999999999999999999887544 3334333 38999999984
No 243
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=6.6e-13 Score=148.90 Aligned_cols=174 Identities=30% Similarity=0.427 Sum_probs=121.2
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
...+...+...++|+++++..+..++.. + +++||.||||||||++|+.+|+.+ +.+|+++.|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~---~--------~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLA---G--------GHVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHc---C--------CCEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 4455566777799999888877666652 1 269999999999999999999999 6899999998764
Q ss_pred chhhhhhhcCCCC--------CcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 720 EKHAVSRLIGAPP--------GYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 720 ~~~~~~~l~G~~~--------g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
.. +.++|... +..-+.. +.++.... +|+++|||+++++.+|+.|+++|++++++...-..+.++
T Consensus 81 ~p---~d~~G~~~~~~~~~~~~~~~~~~-gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~ 152 (329)
T COG0714 81 LP---SDLLGTYAYAALLLEPGEFRFVP-GPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP 152 (329)
T ss_pred CH---HHhcCchhHhhhhccCCeEEEec-CCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence 43 34445321 1111111 22222222 699999999999999999999999998887642214444
Q ss_pred -CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHH
Q 002068 792 -NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 792 -~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I 860 (973)
.+++|+|+|++.. .+ ...+++++++||...+.+.++..++-..+
T Consensus 153 ~~f~viaT~Np~e~-----~g--------------------~~~l~eA~ldRf~~~~~v~yp~~~~e~~~ 197 (329)
T COG0714 153 PPFIVIATQNPGEY-----EG--------------------TYPLPEALLDRFLLRIYVDYPDSEEEERI 197 (329)
T ss_pred CCCEEEEccCcccc-----CC--------------------CcCCCHHHHhhEEEEEecCCCCchHHHHH
Confidence 6778888896321 11 12357789999977788888744443333
No 244
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.6e-13 Score=140.49 Aligned_cols=148 Identities=24% Similarity=0.383 Sum_probs=112.0
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH----hCCCeEEEE
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE----SEGQIILFI 354 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~----~~~~~ILfi 354 (973)
+||.||||||||+|+++||+.+.- ...+......++++|..++.+ +|-++.-+.+..+|+.+.. .+.-+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSI-R~~~~y~~~~liEinshsLFS--KWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSI-RTNDRYYKGQLIEINSHSLFS--KWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhhee-eecCccccceEEEEehhHHHH--HHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 589999999999999999999832 222334567899999998884 5777766666666665543 233467789
Q ss_pred ccccccccCCC-------CCchhhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHH
Q 002068 355 DEIHTVVGAGA-------TNGAMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVED 422 (973)
Q Consensus 355 DEi~~l~~~~~-------~~~~~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e 422 (973)
||++.+..++. ..++..+.|.|+.-++ ..++.+.+|+|-.+ .+|.||.+|-+ ..++.+|+.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 99999985542 2245667788877775 45677777777766 79999999998 67999999999
Q ss_pred HHHHHHHHHHHH
Q 002068 423 TISILRGLRERY 434 (973)
Q Consensus 423 ~~~il~~~~~~~ 434 (973)
+++|++...+.+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999877754
No 245
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.44 E-value=7.7e-13 Score=165.64 Aligned_cols=144 Identities=14% Similarity=0.209 Sum_probs=102.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh----hhh-cCC------------------------C
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV----SRL-IGA------------------------P 731 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~----~~l-~G~------------------------~ 731 (973)
.+||+||||||||.||+++|... +.||+.+.++++.+.... ..+ +|. .
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 59999999999999999999998 799999999998753200 000 110 0
Q ss_pred CCcccccc----cchhhHHHHhCCCeEEEEccccccCHH-----HHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCC
Q 002068 732 PGYVGYEE----GGQLTEVVRRRPYAVILFDEIEKAHSD-----VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (973)
Q Consensus 732 ~g~~g~~~----~~~l~~~~~~~~~~Vl~lDEid~l~~~-----v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 802 (973)
.++.+... ...+++.+++..+|||+|||||.+... .++.|+..|+...-. ....+++||++||.
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNR- 1781 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHI- 1781 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCC-
Confidence 11122111 134577888888999999999998753 367888888742110 12247889999998
Q ss_pred hhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHH
Q 002068 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
.+.++|+|+ +|||..|.++.|+..+.++++..
T Consensus 1782 -----------------------------PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1782 -----------------------------PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred -----------------------------cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 345788888 59999999998887776666653
No 246
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-10 Score=124.33 Aligned_cols=143 Identities=18% Similarity=0.298 Sum_probs=97.8
Q ss_pred CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCC-
Q 002068 674 DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPY- 752 (973)
Q Consensus 674 ~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~- 752 (973)
....|.-++|||||||||||++|+.||+.. +..+-.+..+++. |-|.-+......++++..+...
T Consensus 379 ~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVA-----------PlG~qaVTkiH~lFDWakkS~rG 444 (630)
T KOG0742|consen 379 KHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVA-----------PLGAQAVTKIHKLFDWAKKSRRG 444 (630)
T ss_pred cccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCcc-----------ccchHHHHHHHHHHHHHhhcccc
Confidence 345566689999999999999999999988 3333333333331 1222222223467778776554
Q ss_pred eEEEEccccccC---------HHHHHHHHHhh-cCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHH
Q 002068 753 AVILFDEIEKAH---------SDVFNVFLQIL-DDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYET 822 (973)
Q Consensus 753 ~Vl~lDEid~l~---------~~v~~~Ll~~l-e~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~ 822 (973)
-+|||||.|.+- ...-..|..+| ..|. ...+.+++++||.
T Consensus 445 LllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---------qSrdivLvlAtNr--------------------- 494 (630)
T KOG0742|consen 445 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------QSRDIVLVLATNR--------------------- 494 (630)
T ss_pred eEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---------cccceEEEeccCC---------------------
Confidence 478999999543 33333333333 3332 1246778899997
Q ss_pred HHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHH
Q 002068 823 IKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQ 869 (973)
Q Consensus 823 ~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~ 869 (973)
...|+.+.-+|||++|.|+-+..++..+++..+++++.
T Consensus 495 ---------pgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 495 ---------PGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred ---------ccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 23467788899999999999999999999999998765
No 247
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.2e-13 Score=134.86 Aligned_cols=164 Identities=22% Similarity=0.411 Sum_probs=118.1
Q ss_pred ccccccchHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
.+.|-|.+..++.+.+++-. -..|+..|+ .+|+|||||||||.+||+.|..- +..|+.+-...+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQL- 241 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQL- 241 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHH-
Confidence 46788999999999888732 233554443 69999999999999999999776 455555544443
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcC--CeEecCCCc
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDD--GRVTDSQGR 786 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~--g~~~~~~g~ 786 (973)
+..+||.....+ +..+.+.++..++||||||+|.+. .+||..+|.++.. |.-.
T Consensus 242 ----VQMfIGdGAkLV-----RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss----- 307 (424)
T KOG0652|consen 242 ----VQMFIGDGAKLV-----RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS----- 307 (424)
T ss_pred ----HhhhhcchHHHH-----HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC-----
Confidence 344565533322 244556667778999999999654 5688888888853 2211
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
-.++-+|++||. .+-++|+|+ +|+|..|.||.++.+...+|++..
T Consensus 308 ---~~~vKviAATNR------------------------------vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 308 ---DDRVKVIAATNR------------------------------VDILDPALLRSGRLDRKIEFPHPNEEARARILQIH 354 (424)
T ss_pred ---ccceEEEeeccc------------------------------ccccCHHHhhcccccccccCCCCChHHHHHHHHHh
Confidence 125669999997 344688887 899999999999999999998865
Q ss_pred HH
Q 002068 865 LD 866 (973)
Q Consensus 865 l~ 866 (973)
-+
T Consensus 355 sR 356 (424)
T KOG0652|consen 355 SR 356 (424)
T ss_pred hh
Confidence 53
No 248
>PRK06893 DNA replication initiation factor; Validated
Probab=99.43 E-value=1.8e-12 Score=137.43 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=113.3
Q ss_pred cCCCCCCCCchHH--HHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccc
Q 002068 251 AGKLDPVIGRDDE--IRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 328 (973)
Q Consensus 251 ~~~l~~iiG~~~~--i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~ 328 (973)
+.+|++++|++.. +..+.+.......+.++|+||||||||+|++++|+.+... +..+..+++....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~----- 79 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ----- 79 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh-----
Confidence 3478888866542 2222222222222345899999999999999999987443 2334444433211
Q ss_pred cchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEE-EEEccCchHHHhhhccCHHHH
Q 002068 329 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELR-CIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 329 ~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~-iI~at~~~~~~~~~~~d~al~ 407 (973)
.....+++.+. ..-+|+|||++.+.+.. .......+++....+++..+ ++++++.+..-. ...+.+.
T Consensus 80 -----~~~~~~~~~~~---~~dlLilDDi~~~~~~~--~~~~~l~~l~n~~~~~~~~illits~~~p~~l~--~~~~~L~ 147 (229)
T PRK06893 80 -----YFSPAVLENLE---QQDLVCLDDLQAVIGNE--EWELAIFDLFNRIKEQGKTLLLISADCSPHALS--IKLPDLA 147 (229)
T ss_pred -----hhhHHHHhhcc---cCCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc--ccchhHH
Confidence 11123334333 23499999999886432 11223455566666666544 444544444211 2348999
Q ss_pred ccCc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 408 RRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 408 ~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
+|+. .+.+..|+.+++.+|++..+.. .++.++++++.+++..+.+-
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCC
Confidence 9986 6789999999999999877763 57999999999999888643
No 249
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=9.8e-13 Score=138.88 Aligned_cols=153 Identities=21% Similarity=0.349 Sum_probs=106.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-----hCCCeEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVI 755 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl 755 (973)
+++|+||||||||+||+.|+.........|+.+....-.. .++. .+++... -....||
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-~dvR----------------~ife~aq~~~~l~krkTil 226 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-NDVR----------------DIFEQAQNEKSLTKRKTIL 226 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch-HHHH----------------HHHHHHHHHHhhhcceeEE
Confidence 6999999999999999999988854444455554433211 1111 1111111 2334799
Q ss_pred EEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhcc
Q 002068 756 LFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIF 835 (973)
Q Consensus 756 ~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 835 (973)
|||||++++...|+.||..+|+|.++ +|.+|.-.+. =.+
T Consensus 227 FiDEiHRFNksQQD~fLP~VE~G~I~-------------lIGATTENPS----------------------------Fql 265 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHVENGDIT-------------LIGATTENPS----------------------------FQL 265 (554)
T ss_pred EeHHhhhhhhhhhhcccceeccCceE-------------EEecccCCCc----------------------------cch
Confidence 99999999999999999999998754 5554443210 013
Q ss_pred ChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc-C---CceecCHHHHHHHHhc
Q 002068 836 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR-K---MKMQVTDAAIQLLGSL 892 (973)
Q Consensus 836 ~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~-~---~~l~~~~~a~~~L~~~ 892 (973)
..+|++|| .++.+.++..+++..|+.+-+.-+.+.-+.. + -.+.+++.++++|+..
T Consensus 266 n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 266 NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 55899999 8999999999999999998777554322211 1 2346899999999985
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.43 E-value=1.2e-12 Score=139.03 Aligned_cols=162 Identities=12% Similarity=0.266 Sum_probs=116.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||+|||||++|+++++.+...+.++++++|+.+.... . .+.+.+.. .++|+|||+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~----------------~~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P----------------EVLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H----------------HHHhhccc--CCEEEEeCh
Confidence 799999999999999999999987666789999998875421 0 11111222 359999999
Q ss_pred cccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
|.++. ..++.|..+++... + .+..+|+|++.....+ ....+.
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~--~--------~~~~iIits~~~~~~~--------------------------~~~~~~ 143 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVR--E--------AGGRLLIAGRAAPAQL--------------------------PLRLPD 143 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHH--H--------cCCeEEEECCCChHHC--------------------------CcccHH
Confidence 99987 44888888886421 0 1234777887632111 112256
Q ss_pred hhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 839 FMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 839 ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
|.+|+. ..|.++|++.+++..+++.++.. . .+.++++++++|++ .|+++ .|.|++++++.
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~-------~--~~~~~~~~l~~L~~-~~~gn--~r~L~~~l~~~ 205 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAAR-------R--GLQLPDEVADYLLR-HGSRD--MGSLMALLDAL 205 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHH-hccCC--HHHHHHHHHHH
Confidence 777874 58999999999999888765432 2 36799999999999 58777 79999988873
No 251
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.6e-12 Score=149.12 Aligned_cols=199 Identities=19% Similarity=0.288 Sum_probs=126.6
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcc-------eEEecccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA-------LVRIDMSEYM 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~-------~~~i~~~~~~ 719 (973)
.+++|+||+.+++.|.+.+...+ ....+||+||||||||++|+++|+.+.+.... -..-.|+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~--------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR--------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC--------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH
Confidence 35789999999999988876422 11249999999999999999999999653100 0001122210
Q ss_pred chhhhhhhcCCCCC--------cccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcE
Q 002068 720 EKHAVSRLIGAPPG--------YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 720 ~~~~~~~l~G~~~g--------~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
.=..+ .-|..+. ..+.++...+.+.+. .+++.|+||||+|.++...++.|+..+++
T Consensus 86 ~c~~~--~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe---------- 153 (397)
T PRK14955 86 SCRDF--DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE---------- 153 (397)
T ss_pred HHHHH--hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc----------
Confidence 00000 0011111 111111122233332 23567999999999999999999999986
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
....++||++++. ...+.+.+.+|+ .++.|.|++.+++.+.+...++.
T Consensus 154 -p~~~t~~Il~t~~------------------------------~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 154 -PPPHAIFIFATTE------------------------------LHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred -CCCCeEEEEEeCC------------------------------hHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHH
Confidence 2346677777654 112345677888 58999999999999888876642
Q ss_pred HHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 868 VQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.++++++++|+... .+ +.|.+.+.+++
T Consensus 202 -------~--g~~i~~~al~~l~~~s-~g--~lr~a~~~L~k 231 (397)
T PRK14955 202 -------E--GISVDADALQLIGRKA-QG--SMRDAQSILDQ 231 (397)
T ss_pred -------c--CCCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 2 3679999999999863 22 24544444443
No 252
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.1e-12 Score=155.57 Aligned_cols=199 Identities=21% Similarity=0.323 Sum_probs=128.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc---c-e---EEeccccc-
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---A-L---VRIDMSEY- 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~---~-~---~~i~~~~~- 718 (973)
-+++++||+.++..|.+++...+. ...+||+||+|||||++|+++|+.+++... + + ..-.|+.+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri--------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 467899999999999887763221 125999999999999999999999965210 0 0 00122222
Q ss_pred -----cchhh--hhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcE
Q 002068 719 -----MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 -----~~~~~--~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
..... +..+-|. ...+.++...+.+.+. ...+.|+||||+|.+....++.|+..|++
T Consensus 86 sC~~~~~g~~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe---------- 153 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE---------- 153 (620)
T ss_pred HHHHHhccCCCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC----------
Confidence 11000 0011110 1111122222333332 24567999999999999999999999997
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
....++||++++. ...+.+.+.+|+ .+|.|.+++.+++...+...+..
T Consensus 154 -Pp~~tv~IL~t~~------------------------------~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 154 -PPPHAIFIFATTE------------------------------LHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred -CCCCeEEEEEeCC------------------------------hhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 2346777777654 122445788999 89999999999998888776643
Q ss_pred HHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 868 VQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.++++++++|+... . .+.|.+.+.+++
T Consensus 202 -------e--gi~I~~eal~~La~~s-~--Gdlr~al~eLeK 231 (620)
T PRK14954 202 -------E--GIQIDADALQLIARKA-Q--GSMRDAQSILDQ 231 (620)
T ss_pred -------c--CCCCCHHHHHHHHHHh-C--CCHHHHHHHHHH
Confidence 3 3668999999999853 2 224555444443
No 253
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=2e-12 Score=152.27 Aligned_cols=174 Identities=24% Similarity=0.345 Sum_probs=125.8
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
.+++|++.++..|...+..+..|. |..++||+||||||||++|+++|+.+ +..++.++++++.....+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~-----~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGK-----PKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHH
Confidence 568999999999999887765332 22379999999999999999999998 6788999988765544444444
Q ss_pred CCCCCcccccccchhhHHHHhCCCeEEEEccccccCH----HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChh
Q 002068 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS----DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (973)
Q Consensus 729 G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~----~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 804 (973)
+....+. .++ ...+.||+|||+|.++. ..++.|+..++.. ++.||+++|...
T Consensus 86 ~~~~~~~------sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n~~~- 141 (482)
T PRK04195 86 GEAATSG------SLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPIILTANDPY- 141 (482)
T ss_pred HHhhccC------ccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEEEeccCcc-
Confidence 3221110 111 12457999999999976 6788899998752 234677777521
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHhccCh-hhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRP-EFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p-~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
...+ .+.+|+ ..|.|++++.+++..++...+.. .| +.+++
T Consensus 142 -----------------------------~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~-------eg--i~i~~ 182 (482)
T PRK04195 142 -----------------------------DPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK-------EG--IECDD 182 (482)
T ss_pred -----------------------------ccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCH
Confidence 1222 566777 78999999999999988877643 33 56899
Q ss_pred HHHHHHHhcC
Q 002068 884 AAIQLLGSLG 893 (973)
Q Consensus 884 ~a~~~L~~~~ 893 (973)
+++++|++..
T Consensus 183 eaL~~Ia~~s 192 (482)
T PRK04195 183 EALKEIAERS 192 (482)
T ss_pred HHHHHHHHHc
Confidence 9999999853
No 254
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.42 E-value=3.1e-12 Score=145.66 Aligned_cols=198 Identities=21% Similarity=0.375 Sum_probs=127.0
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
.+..++||+.+++.+...+... +....+||+||||+|||++|+.+++.+.+....- .-.|+.+..-..+.
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~- 81 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEIN- 81 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHh-
Confidence 4578999999999998877631 1223689999999999999999999986432110 01122111000000
Q ss_pred hcCCCCCc--------ccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 727 LIGAPPGY--------VGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 727 l~G~~~g~--------~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.|..+.+ .+......+.+.+.. .++.||+|||+|.+....++.|+..+++ ...+++
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~~~~ 149 (355)
T TIGR02397 82 -SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPEHVV 149 (355)
T ss_pred -cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------Ccccee
Confidence 0111111 111111123333332 3456999999999999999999999986 224677
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||+++|. ...+.+.+.+|+ ..+.|+|++.+++.+++...+.+
T Consensus 150 lIl~~~~------------------------------~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~------- 191 (355)
T TIGR02397 150 FILATTE------------------------------PHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDK------- 191 (355)
T ss_pred EEEEeCC------------------------------HHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHH-------
Confidence 7777765 112345677888 68999999999999998887743
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.| +.++++++++|++.. .+ +.|.+.+.+++
T Consensus 192 ~g--~~i~~~a~~~l~~~~-~g--~~~~a~~~lek 221 (355)
T TIGR02397 192 EG--IKIEDEALELIARAA-DG--SLRDALSLLDQ 221 (355)
T ss_pred cC--CCCCHHHHHHHHHHc-CC--ChHHHHHHHHH
Confidence 33 568999999999853 22 24555555544
No 255
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=7.1e-12 Score=140.08 Aligned_cols=201 Identities=16% Similarity=0.140 Sum_probs=136.2
Q ss_pred HhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCC----CCcccC----CC-------
Q 002068 249 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGD----VPQALM----NR------- 312 (973)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~----~p~~l~----~~------- 312 (973)
..|..+++++|++..+..+...+.++..+| +||+||+|+|||++|+.+|+.+.+.. .|..+. .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 367788999999999999999988777665 78999999999999999999997632 111110 01
Q ss_pred -----eEEEEEccc-ccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-
Q 002068 313 -----KLISLDMGA-LIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (973)
Q Consensus 313 -----~~~~l~~~~-~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (973)
.++.+.... ...+....+-..+.++.+.+.+.. .++..|++|||+|.|. ..++|.|+..+++
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN--------RNAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC--------HHHHHHHHHHHhcC
Confidence 122222110 000000011112334444444332 2456799999999997 5577888888875
Q ss_pred -CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCC
Q 002068 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (973)
Q Consensus 383 -g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r 461 (973)
.+..+|..|+.+. .+.|.+++||+.+.|++|+.++...+|..... ...++++++..++.++.
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~------~~~~~~~~~~~i~~~s~------ 231 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS------SQGSDGEITEALLQRSK------ 231 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc------ccCCCHHHHHHHHHHcC------
Confidence 3566666666654 46799999999999999999999988876322 11267888888888875
Q ss_pred CCchHHHHHHHHH
Q 002068 462 FLPDKAIDLVDEA 474 (973)
Q Consensus 462 ~~p~~a~~lld~a 474 (973)
..|..++.+++..
T Consensus 232 G~pr~Al~ll~~~ 244 (351)
T PRK09112 232 GSVRKALLLLNYG 244 (351)
T ss_pred CCHHHHHHHHhcC
Confidence 4567788877543
No 256
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.42 E-value=6.3e-12 Score=131.85 Aligned_cols=208 Identities=14% Similarity=0.141 Sum_probs=155.4
Q ss_pred HhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 239 EKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 239 ~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
..+.-+|.++|+|..+++++++++.+..+.......+.+|+|+|||||+|||+...+.|..+.+-.- .+..+.+++
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~----~~~m~leln 100 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHP----TTSMLLELN 100 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCC----chhHHHHhh
Confidence 4567789999999999999999999988888877777789999999999999999999999855311 122344555
Q ss_pred cccccccccccchHHHHHHHHHHHHHH------hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEc
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGA 390 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~a 390 (973)
.++-. ..+-..+++ ..|..... ......+++||+|.+. .+++|.|++.++ ..+++++..
T Consensus 101 aSd~r----gid~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 101 ASDDR----GIDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred ccCcc----CCcchHHHH-HHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHhccceEEEEe
Confidence 44422 222233332 23333321 1245689999999998 789999999887 346777777
Q ss_pred cCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHH
Q 002068 391 TTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDL 470 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~l 470 (973)
+|+.. .+.|++++||+++.+.+.+.++...++..+++ .....++++...+++.++.+-.. ++.+.
T Consensus 168 ~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----~e~~~~~~~~~~a~~r~s~gDmr------~a~n~ 232 (360)
T KOG0990|consen 168 SNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----SEQKETNPEGYSALGRLSVGDMR------VALNY 232 (360)
T ss_pred ccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHh----cchhhcCHHHHHHHHHHhHHHHH------HHHHH
Confidence 77775 68899999999999999998888888888887 35677888888888888764332 67777
Q ss_pred HHHHHhhh
Q 002068 471 VDEAAAKL 478 (973)
Q Consensus 471 ld~a~~~~ 478 (973)
|+......
T Consensus 233 Lqs~~~~~ 240 (360)
T KOG0990|consen 233 LQSILKKV 240 (360)
T ss_pred HHHHHHHh
Confidence 77766554
No 257
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=2.4e-12 Score=152.50 Aligned_cols=223 Identities=10% Similarity=0.056 Sum_probs=142.2
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCC----C-ceEECCCCCcHHHHHHHHHHHHhcCCCCcccC--CCeEE
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN----N-PVLIGEPGVGKTAISEGLAQRIVQGDVPQALM--NRKLI 315 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~----~-~LL~GppG~GKT~la~~la~~l~~~~~p~~l~--~~~~~ 315 (973)
.+|+++|+|..+++++|+++.++.+...+...... . ++|+||||+||||+++.+|+.+.. .+.+-.. ++...
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~-~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI-QVQEWSNPTLPDFQ 150 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh-HHHHHhhhhhhccc
Confidence 47999999999999999999988888776543322 2 789999999999999999998721 1000000 00000
Q ss_pred EEE---cccccccccccchHHHHHHHHHHHHHH---------hCCCeEEEEccccccccCCCCCchhhHHHHHh-hhhcC
Q 002068 316 SLD---MGALIAGAKYRGEFEDRLKAVLKEVTE---------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLK-PMLGR 382 (973)
Q Consensus 316 ~l~---~~~~~~g~~~~g~~e~~l~~~~~~~~~---------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~-~~l~~ 382 (973)
.-+ ...+...........+.++.++..+.. .....||||||++.++... .....++|+ ...+.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq~lLr~~~~e~ 226 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALHEILRWKYVSI 226 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHHHHHHHHhhcC
Confidence 000 000000000001122334455555432 1346799999998877432 234667777 67778
Q ss_pred CCEEEEEccCchHH------Hhhhc----cCHHHHc--cCceEEecCCCHHHHHHHHHHHHHHHhhhc--CCcc-CHHHH
Q 002068 383 GELRCIGATTLDEY------RKYIE----KDPALER--RFQQVYVDQPNVEDTISILRGLRERYELHH--GVRI-SDSAL 447 (973)
Q Consensus 383 g~i~iI~at~~~~~------~~~~~----~d~al~~--Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~--~v~i-~~~~l 447 (973)
+.+.+|+++|...+ ...+. +.+++++ |+..|.|.+.+..+..+.|+.++....... ...+ +++++
T Consensus 227 ~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l 306 (637)
T TIGR00602 227 GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSV 306 (637)
T ss_pred CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHH
Confidence 88889998885543 11122 4588987 566799999999999999998887643222 2223 57888
Q ss_pred HHHHHhcccccCCCCCchHHHHHHHHHHh
Q 002068 448 VEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (973)
Q Consensus 448 ~~l~~~s~~~i~~r~~p~~a~~lld~a~~ 476 (973)
..++..+.+-+. .|+..|+-+|.
T Consensus 307 ~~I~~~s~GDiR------sAIn~LQf~~~ 329 (637)
T TIGR00602 307 ELLCQGCSGDIR------SAINSLQFSSS 329 (637)
T ss_pred HHHHHhCCChHH------HHHHHHHHHHh
Confidence 888887765443 68888887764
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.40 E-value=6e-12 Score=133.75 Aligned_cols=158 Identities=12% Similarity=0.213 Sum_probs=116.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||+|||||++|+++++.+...+.+++.+++....... . ......+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~--~~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------D--FDPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------h--hcccCCEEEEeCh
Confidence 699999999999999999999987767889999988753210 0 0112459999999
Q ss_pred cccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh
Q 002068 761 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 840 (973)
Q Consensus 761 d~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll 840 (973)
|.+++..+..|+.+++... .....++|+|++.... ...+.++|.
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~---------------------------~~~l~~~L~ 143 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL---------------------------ALPLREDLR 143 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH---------------------------hCCCCHHHH
Confidence 9999999999999986421 0123346666665210 112567888
Q ss_pred ccc--ceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 841 NRV--DEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 841 ~R~--d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
+|+ ...|.++|++.++...++..... .. .+.++++++++|++ .|+++ .|.|.++++.+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~-------~~--~v~l~~~al~~L~~-~~~gn--~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAA-------ER--GLQLADEVPDYLLT-HFRRD--MPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHH-------Hc--CCCCCHHHHHHHHH-hccCC--HHHHHHHHHHH
Confidence 898 46899999998877666654332 23 37899999999999 68877 68888888874
No 259
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=8.1e-12 Score=141.11 Aligned_cols=187 Identities=25% Similarity=0.337 Sum_probs=125.5
Q ss_pred CCCchHHHHHHHHHhc----c-------C-------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 257 VIGRDDEIRRCIQILS----R-------R-------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 257 iiG~~~~i~~li~~l~----~-------~-------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+|||++.++.+...+. + . .+.++||+||||||||++|+++|+.+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 7999998888866551 1 1 13579999999999999999999988 77888888
Q ss_pred cccccccccccch-HHHHHHHHHHHHH---HhCCCeEEEEccccccccCCCCC------chhhHHHHHhhhhcC------
Q 002068 319 MGALIAGAKYRGE-FEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGR------ 382 (973)
Q Consensus 319 ~~~~~~g~~~~g~-~e~~l~~~~~~~~---~~~~~~ILfiDEi~~l~~~~~~~------~~~~~~~~L~~~l~~------ 382 (973)
++.+. ...|.|. .+..+..++.... ....++||||||+|.+.....+. ....+++.|+++++.
T Consensus 149 a~~L~-~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLT-EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhcc-ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 87764 2347776 3444444443211 12346799999999998643221 123578888888841
Q ss_pred ---C------CEEEEEccCch-------------------------------------HHH------h--hhccCHHHHc
Q 002068 383 ---G------ELRCIGATTLD-------------------------------------EYR------K--YIEKDPALER 408 (973)
Q Consensus 383 ---g------~i~iI~at~~~-------------------------------------~~~------~--~~~~d~al~~ 408 (973)
| +.++|.|+|-- ++. . .+.+.|+|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 1 23456665540 000 0 1124599999
Q ss_pred cCce-EEecCCCHHHHHHHHHH----HHHHHhhh-----cCCccCHHHHHHHHHhc
Q 002068 409 RFQQ-VYVDQPNVEDTISILRG----LRERYELH-----HGVRISDSALVEAAILS 454 (973)
Q Consensus 409 Rf~~-i~~~~p~~~e~~~il~~----~~~~~~~~-----~~v~i~~~~l~~l~~~s 454 (973)
|++. +.|.+.+.+++.+|+.. +.++|... ..+.+++++++++++.+
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 9985 56778899999999865 45555432 24578999999999875
No 260
>PRK05642 DNA replication initiation factor; Validated
Probab=99.40 E-value=6.3e-12 Score=133.58 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=121.1
Q ss_pred CCCCCC-CchHHHHHHHHHhcc----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc
Q 002068 253 KLDPVI-GRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 253 ~l~~ii-G~~~~i~~li~~l~~----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+|+.++ |........++.+.. ...++++|+||+|||||+|+++++..+... +..++.++...+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh--
Confidence 566655 555554444443321 123567899999999999999999987432 456777776665421
Q ss_pred ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHH
Q 002068 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 328 ~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~ 407 (973)
...+++.+... -+|+|||++.+.+.. .......+++....++|..++|++++.+.+-. ...|.++
T Consensus 88 --------~~~~~~~~~~~---d~LiiDDi~~~~~~~--~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQY---ELVCLDDLDVIAGKA--DWEEALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhC---CEEEEechhhhcCCh--HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHH
Confidence 12334444332 288999999876432 12244666676777788888888887665421 2369999
Q ss_pred ccC---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 408 RRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 408 ~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
+|| ..+.+..|+.+++.++++..+.. .++.++++++++++..+.+-
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC
Confidence 999 46789999999999999854442 47899999999999887643
No 261
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7.5e-13 Score=134.11 Aligned_cols=163 Identities=24% Similarity=0.421 Sum_probs=119.2
Q ss_pred ccccccchHHHHHHHHHHH--------HHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQ--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~--------~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
...|-|-.+.++.+.+.+. ....|+..|+ .+|++||||||||.+|+++|+.. +.-|+++=.|++.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppk----gvllygppgtgktl~aravanrt---dacfirvigselv 248 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELV 248 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHH
Confidence 4667788888888877763 2344555443 59999999999999999999866 6778998888875
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
.+ ++|.. ......+++..+...-|+|||||||.+. .+||..+|.++..-.--|++
T Consensus 249 qk-----yvgeg-----armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr---- 314 (435)
T KOG0729|consen 249 QK-----YVGEG-----ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR---- 314 (435)
T ss_pred HH-----Hhhhh-----HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC----
Confidence 54 33332 2223567777888888999999999764 56999999888642222322
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
.|.-++|+||. ...++|+|+ +|+|..|.|.-++-+-...|++.
T Consensus 315 --gnikvlmatnr------------------------------pdtldpallrpgrldrkvef~lpdlegrt~i~ki 359 (435)
T KOG0729|consen 315 --GNIKVLMATNR------------------------------PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI 359 (435)
T ss_pred --CCeEEEeecCC------------------------------CCCcCHhhcCCcccccceeccCCcccccceeEEE
Confidence 36779999997 234667776 89999999999987776666654
No 262
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.39 E-value=5.9e-13 Score=129.64 Aligned_cols=137 Identities=22% Similarity=0.406 Sum_probs=102.7
Q ss_pred ccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCC
Q 002068 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP 731 (973)
Q Consensus 652 ~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~ 731 (973)
+|.+.+++.+.+.+........ ++||+|++||||+.+|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~-------pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSS-------PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS--------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCC-------cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 5889999999999988763222 599999999999999999999887767788888888652
Q ss_pred CCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCC
Q 002068 732 PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDD 811 (973)
Q Consensus 732 ~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~ 811 (973)
.+.+..+.+++|||+|||.++++.|..|++.++... -.++.+|+|+..+...+.+
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhh---
Confidence 234555678899999999999999999999998521 2456899999886554433
Q ss_pred CCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCC
Q 002068 812 ETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPL 852 (973)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l 852 (973)
...|.++|++||+. .|.+|||
T Consensus 117 --------------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------------ccchhHHHHHHhCCCEEeCCCC
Confidence 45588899999974 7888875
No 263
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.38 E-value=2e-12 Score=124.75 Aligned_cols=116 Identities=29% Similarity=0.502 Sum_probs=86.9
Q ss_pred EEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccc--cccchhhHHHHhCC-CeEEEEc
Q 002068 682 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY--EEGGQLTEVVRRRP-YAVILFD 758 (973)
Q Consensus 682 ~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~--~~~~~l~~~~~~~~-~~Vl~lD 758 (973)
+||+||||||||++|+.+++.+ +.+++.++++++.... .+. .....++..+.... ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISSY------------AGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTSS------------TTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccccccccc------------ccccccccccccccccccccceeeeec
Confidence 6899999999999999999999 6889999999885321 110 01123344444454 7999999
Q ss_pred cccccCHHH-----------HHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHH
Q 002068 759 EIEKAHSDV-----------FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 827 (973)
Q Consensus 759 Eid~l~~~v-----------~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~ 827 (973)
|+|.+.+.. ++.|+..++...- ...+++||+|||.
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~~~~vI~ttn~-------------------------- 111 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS--------KNSRVIVIATTNS-------------------------- 111 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT--------TSSSEEEEEEESS--------------------------
T ss_pred cchhcccccccccccccccccceeeeccccccc--------ccccceeEEeeCC--------------------------
Confidence 999988765 8999999986321 0246899999998
Q ss_pred HHHHHhccChhhh-cccceEEEcC
Q 002068 828 MDAARSIFRPEFM-NRVDEYIVFQ 850 (973)
Q Consensus 828 ~~~l~~~f~p~ll-~R~d~~i~f~ 850 (973)
...++|.|+ +||+..|.|+
T Consensus 112 ----~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 112 ----PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp ----GGGSCHHHHSTTSEEEEEE-
T ss_pred ----hhhCCHhHHhCCCcEEEEcC
Confidence 345788999 9999888875
No 264
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=1.2e-11 Score=138.96 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=133.2
Q ss_pred HhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------------
Q 002068 249 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------------- 308 (973)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------------- 308 (973)
.+|..++++||++..++.+.+.+.+...+| .||+||+|+||+++|..+|+.+.+......
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 367888999999999999999998877666 789999999999999999999976431110
Q ss_pred -----cCCCeEEEEEcccccccccc-cchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhh
Q 002068 309 -----LMNRKLISLDMGALIAGAKY-RGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (973)
Q Consensus 309 -----l~~~~~~~l~~~~~~~g~~~-~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (973)
...-.++.+....-..+.+. ..-..+.++.+.+.+.. .+++.|++|||+|.+. ...+|.|+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 00112333322100001000 01122335555554432 2456799999999997 5678888888
Q ss_pred hcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 380 LGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 380 l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
+++ +...+|.+|+... .+.+.+++||+.|.|++|+.++..++|... ....++..+..++.++.
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~--------~~~~~~~~~~~l~~~s~-- 229 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAA--------GPDLPDDPRAALAALAE-- 229 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHh--------cccCCHHHHHHHHHHcC--
Confidence 885 4667777777665 467999999999999999999988777542 22344555566777775
Q ss_pred cCCCCCchHHHHHHH
Q 002068 458 ISGRFLPDKAIDLVD 472 (973)
Q Consensus 458 i~~r~~p~~a~~lld 472 (973)
..|.+++.+++
T Consensus 230 ----Gsp~~Al~ll~ 240 (365)
T PRK07471 230 ----GSVGRALRLAG 240 (365)
T ss_pred ----CCHHHHHHHhc
Confidence 34556666654
No 265
>PRK06893 DNA replication initiation factor; Validated
Probab=99.38 E-value=7.5e-12 Score=132.70 Aligned_cols=163 Identities=13% Similarity=0.232 Sum_probs=111.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
.++|+||||||||+|++++++.+...+....++++....... ..+.+.++ ...+|+||||
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS------------------PAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh------------------HHHHhhcc--cCCEEEEeCh
Confidence 589999999999999999999986555556666664321100 01111222 2359999999
Q ss_pred cccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
+.+. +..+..|+.+++... .-...++|+|+|..+..+. ...|+
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l~--------------------------~~~~~ 145 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHALS--------------------------IKLPD 145 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHcc--------------------------ccchh
Confidence 9875 445667777776421 0123457788887443321 13367
Q ss_pred hhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 839 FMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 839 ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
+.+|+. .++.+++++.+++.+|++..+.. . .+.+++++++||++. ++.. .|.+...++++
T Consensus 146 L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~-------~--~l~l~~~v~~~L~~~-~~~d--~r~l~~~l~~l 207 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ-------R--GIELSDEVANFLLKR-LDRD--MHTLFDALDLL 207 (229)
T ss_pred HHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-ccCC--HHHHHHHHHHH
Confidence 888873 48899999999999999887642 2 478999999999995 4433 68888887774
No 266
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.38 E-value=3.7e-12 Score=152.20 Aligned_cols=209 Identities=19% Similarity=0.219 Sum_probs=136.4
Q ss_pred ceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCccccccc--chhhHHHHhCCCeEEE
Q 002068 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEVVRRRPYAVIL 756 (973)
Q Consensus 679 ~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~Vl~ 756 (973)
+|++||.|+||||||++|++|++.+.. ..+|+.+.++. ....++|...-+.....+ ..-.+.+.++.++|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~-----t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGV-----TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCccc-----chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 779999999999999999999998743 34788887532 233455542100000000 0112345567889999
Q ss_pred EccccccCHHHHHHHHHhhcCCeEecCC-CcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhc
Q 002068 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 834 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 834 (973)
+|||+.+++.+|+.|+++|++|.++... |.....+ ++.+|+|+|+.. . ...
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e----~-----------------------~g~ 142 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE----G-----------------------GGG 142 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc----c-----------------------cCC
Confidence 9999999999999999999999876543 5444443 788999999831 0 135
Q ss_pred cChhhhcccceEEEcCCC-CHHHHHHHHHHHHHHHH--------------HHHHhcCCceecCHHHHHHHHhcCCCCCCC
Q 002068 835 FRPEFMNRVDEYIVFQPL-DRDQISSIVRLQLDRVQ--------------KRIADRKMKMQVTDAAIQLLGSLGYDPNYG 899 (973)
Q Consensus 835 f~p~ll~R~d~~i~f~~l-~~~~l~~I~~~~l~~~~--------------~~~~~~~~~l~~~~~a~~~L~~~~~~~~~g 899 (973)
|+++|++||+..|...++ +.++..+|+...+.... ...+..--.+.++++++++|+..+... |
T Consensus 143 L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~--g 220 (589)
T TIGR02031 143 LPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASL--G 220 (589)
T ss_pred CCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHc--C
Confidence 889999999987776655 45556777776553221 112222235789999999999876543 3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCC
Q 002068 900 ARPVKRVIQQYVENELAKGILRGE 923 (973)
Q Consensus 900 aR~L~r~i~~~i~~~la~~~l~~~ 923 (973)
+.+++..+ .++.-.-|.+.+.|+
T Consensus 221 v~s~Ra~i-~~~r~ArA~Aal~gr 243 (589)
T TIGR02031 221 ISGHRADL-FAVRAAKAHAALHGR 243 (589)
T ss_pred CCCccHHH-HHHHHHHHHHHHhCC
Confidence 33333333 235555555566553
No 267
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.7e-12 Score=141.98 Aligned_cols=188 Identities=20% Similarity=0.352 Sum_probs=126.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc-------ceEEecccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-------ALVRIDMSEYM 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~-------~~~~i~~~~~~ 719 (973)
-+++++||+.+++.+.+.+... +...++||+||||+|||++|+++++.+.+... ++..+++...
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~- 85 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA- 85 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc-
Confidence 3578999999999988888631 11137999999999999999999999854211 1111111100
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
+..+......+.+.+.. .++.||+|||+|.+....++.|+..+++ ...+++|
T Consensus 86 -------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~~ 141 (367)
T PRK14970 86 -------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAIF 141 (367)
T ss_pred -------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceEE
Confidence 00111111122222221 3457999999999999999999999976 2245777
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++++. ...+.|++.+|+ .++.|.+++.+++..++...+.+ .
T Consensus 142 Il~~~~------------------------------~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~-------~ 183 (367)
T PRK14970 142 ILATTE------------------------------KHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVK-------E 183 (367)
T ss_pred EEEeCC------------------------------cccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHH-------c
Confidence 777764 223566788898 68999999999999888877743 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
| +.++++++++|+... . .+.|.+.+.+++.
T Consensus 184 g--~~i~~~al~~l~~~~-~--gdlr~~~~~lekl 213 (367)
T PRK14970 184 G--IKFEDDALHIIAQKA-D--GALRDALSIFDRV 213 (367)
T ss_pred C--CCCCHHHHHHHHHhC-C--CCHHHHHHHHHHH
Confidence 3 578999999999852 2 2356665555553
No 268
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=7.8e-12 Score=149.46 Aligned_cols=199 Identities=21% Similarity=0.357 Sum_probs=129.8
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEe------ccccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI------DMSEYME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i------~~~~~~~ 720 (973)
.+++|+||+.++..|.+.+...+ ....+||+||+|+|||++|+++|+.+.+....--.- +|..+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~--------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK--------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 46789999999999988887421 112489999999999999999999986421100000 1111111
Q ss_pred hh--hhhhhcCCCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 721 KH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 721 ~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
.. .+..+-|. +..+.++...+.+.+.. +.+.|++|||+|.++.+.++.|+..||+ ...+++
T Consensus 87 ~~~~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------pp~~ti 153 (614)
T PRK14971 87 QRSYNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------PPSYAI 153 (614)
T ss_pred CCCCceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------CCCCeE
Confidence 10 00111111 11111111122222232 3467999999999999999999999997 334678
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++|+. ...+.+.+.+|+ .++.|.+++.+++...+...+.+
T Consensus 154 fIL~tt~------------------------------~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~------- 195 (614)
T PRK14971 154 FILATTE------------------------------KHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASK------- 195 (614)
T ss_pred EEEEeCC------------------------------chhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH-------
Confidence 8888764 233566889999 78999999999999888876643
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.| +.++++++++|+... . .+.|.+.+.+++
T Consensus 196 eg--i~i~~~al~~La~~s-~--gdlr~al~~Lek 225 (614)
T PRK14971 196 EG--ITAEPEALNVIAQKA-D--GGMRDALSIFDQ 225 (614)
T ss_pred cC--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 33 678999999999863 2 235555555544
No 269
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=2.9e-11 Score=139.76 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=139.1
Q ss_pred CCCCCchHHHHHHHHHhcc----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc------
Q 002068 255 DPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------ 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~------ 324 (973)
+.++||+++++.+...+.. ..+.+++++||||||||++++.+++.+.... .+..++.+++.....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 4589999999999888632 3456799999999999999999999885432 256788888754311
Q ss_pred -------c--ccccc-hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc---CCCEEEEEcc
Q 002068 325 -------G--AKYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGAT 391 (973)
Q Consensus 325 -------g--~~~~g-~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~i~iI~at 391 (973)
+ ....| ...+.+..+.+.+...+.+.||+|||+|.+.... +......++ ..++ ..++.+|+++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---~~~~l~~l~-~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---GNDVLYSLL-RAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---CchHHHHHH-HhhhccCCCeEEEEEEE
Confidence 1 01122 2333344444444444556899999999997211 112233333 3332 2368889988
Q ss_pred CchHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHH
Q 002068 392 TLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ 469 (973)
+..+... .+++.+.+||. .|.|++++.++..+|++..++. ......+++++++.+++.+.+..+ -..++++
T Consensus 181 ~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~~G---d~r~a~~ 253 (394)
T PRK00411 181 SDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTAREHG---DARVAID 253 (394)
T ss_pred CCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHhcC---cHHHHHH
Confidence 8766543 26788988884 6899999999999999876642 112345899999999988864322 2457788
Q ss_pred HHHHHHhhh
Q 002068 470 LVDEAAAKL 478 (973)
Q Consensus 470 lld~a~~~~ 478 (973)
++..|+..+
T Consensus 254 ll~~a~~~a 262 (394)
T PRK00411 254 LLRRAGLIA 262 (394)
T ss_pred HHHHHHHHH
Confidence 887776544
No 270
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.36 E-value=1e-11 Score=143.63 Aligned_cols=186 Identities=13% Similarity=0.225 Sum_probs=115.6
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccch---hhh-
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK---HAV- 724 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~---~~~- 724 (973)
..++||..+++.+.-++. +. .+++|+||||+|||++++.|+..+..... -..+++..+.+- ...
T Consensus 191 ~~v~Gq~~~~~al~laa~----~G-------~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA----GG-------HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheecc----CC-------cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhcccccc
Confidence 568899877766533322 11 27999999999999999999988732111 122333332110 000
Q ss_pred hhh----cCCCCC------cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEec-cC
Q 002068 725 SRL----IGAPPG------YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TN 792 (973)
Q Consensus 725 ~~l----~G~~~g------~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~-~~ 792 (973)
..+ |-+|+. .+|-.. ..-.+.+..+.++||||||++.+++.+++.|++.||+|.++... |....+ .+
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg~-~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGGA-IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCCc-eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 000 001111 111000 12246788999999999999999999999999999999987544 444444 48
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQ 856 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~ 856 (973)
+.+|+|+|+...... +... +.+....+. .....++++|++|||..|.+++++.++
T Consensus 338 f~lIAa~NP~pcG~~------~~~~--c~c~~~~~~-~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 338 FQLVAAMNPSPTGHY------QGNH--NRCTPEQTL-RYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred EEEEEeecCccceec------CCCC--CCcCHHHHH-HHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 999999998531111 1100 222222222 345678999999999999999886443
No 271
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=8.1e-12 Score=149.28 Aligned_cols=197 Identities=19% Similarity=0.328 Sum_probs=127.9
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcc-eEEeccccccchhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA-LVRIDMSEYMEKHAVS 725 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~-~~~i~~~~~~~~~~~~ 725 (973)
.+..++||+.++..|...+...+. ..++||+||+|+|||++|+++|+.+++.... ...-.|+... ..
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~----~C 81 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE----LC 81 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH----HH
Confidence 357899999999999888874221 1269999999999999999999999653210 0001222110 00
Q ss_pred hhc--CCCC--------CcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 726 RLI--GAPP--------GYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 726 ~l~--G~~~--------g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
+.+ |..+ ...+.+..+.+.+.+.. +.+.|+||||+|+++.+.++.|+..||+ ...
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~ 150 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPP 150 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCc
Confidence 000 1111 11222222223333332 4567999999999999999999999996 334
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+++||++|+. ...+.|.+.+|| ..+.|.+++.+++...+...+.+
T Consensus 151 ~tvfIL~t~~------------------------------~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~k---- 195 (620)
T PRK14948 151 RVVFVLATTD------------------------------PQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEK---- 195 (620)
T ss_pred CeEEEEEeCC------------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH----
Confidence 6778887764 122456789999 78999999998888777665532
Q ss_pred HHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 872 IADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
. .+.++++++..|++.. . .+.|...+.+++
T Consensus 196 ---e--gi~is~~al~~La~~s-~--G~lr~A~~lLek 225 (620)
T PRK14948 196 ---E--SIEIEPEALTLVAQRS-Q--GGLRDAESLLDQ 225 (620)
T ss_pred ---h--CCCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 2 3568899999888853 2 234555555544
No 272
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=6.2e-12 Score=150.84 Aligned_cols=199 Identities=20% Similarity=0.318 Sum_probs=127.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
.+++|+||+.++..|.+.+...+ ....+||+||+|+|||++|+++++.+.+....-..-.|+....-..+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~--------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~- 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR--------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA- 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC--------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh-
Confidence 46789999999999988876422 112579999999999999999999995422100001121110000000
Q ss_pred hcCCCC--------CcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 727 LIGAPP--------GYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 727 l~G~~~--------g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
-|..+ ...+.++...+.+.+. ...+.||||||+|+++.+.++.|+..|++ ...+++
T Consensus 85 -~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~~tv 152 (585)
T PRK14950 85 -EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHAI 152 (585)
T ss_pred -cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCCCeE
Confidence 01111 1122222222333333 24467999999999999999999999987 224677
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||++++. ...+.+.+.+|+ ..+.|.+++.+++..++...+.+
T Consensus 153 ~Il~t~~------------------------------~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~------- 194 (585)
T PRK14950 153 FILATTE------------------------------VHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAA------- 194 (585)
T ss_pred EEEEeCC------------------------------hhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHH-------
Confidence 7777654 112345678888 67999999999998888776643
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.| +.++++++.+|+... . .+.|.+.+.+++
T Consensus 195 eg--l~i~~eal~~La~~s-~--Gdlr~al~~Lek 224 (585)
T PRK14950 195 EG--INLEPGALEAIARAA-T--GSMRDAENLLQQ 224 (585)
T ss_pred cC--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 33 568999999998853 2 235666666654
No 273
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=145.62 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=142.2
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-------CCcceEEeccccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEY 718 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~ 718 (973)
.+.+.+.|.++-++.|...+..+..+.. |...++++|+||||||.+++.+.+.+-. ....++++||..+
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsg----pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSG----SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCC----CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 3457899999999999999987665422 2224679999999999999999887721 1245789999877
Q ss_pred cchhhh-----hhhcCCCCCcccccccchhhHHHH---h--CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEE
Q 002068 719 MEKHAV-----SRLIGAPPGYVGYEEGGQLTEVVR---R--RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 719 ~~~~~~-----~~l~G~~~g~~g~~~~~~l~~~~~---~--~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
.....+ ..+.|..+. .|......+...+. . ....||+|||||.+....++.|+++++.-..
T Consensus 828 stp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-------- 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-------- 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------
Confidence 655433 233344432 22111112222222 1 2235999999999987778888888874221
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCCHHHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
.-..++||+.+|.-. +...+.|.+.+||.. .|.|+||+.+++.+|+...+..
T Consensus 899 s~SKLiLIGISNdlD---------------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 899 INSKLVLIAISNTMD---------------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cCCeEEEEEecCchh---------------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 113567899998510 012244566677743 5899999999999999988754
Q ss_pred HHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 868 VQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
. .-.++++|++++++........+|..-.+++.++
T Consensus 952 A---------~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 952 C---------KEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred C---------CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 1358999999999865443444665555554443
No 274
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.36 E-value=1.6e-11 Score=137.69 Aligned_cols=183 Identities=22% Similarity=0.402 Sum_probs=123.3
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc--ceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~--~~~~i~~~~~~~~~~~~ 725 (973)
+++++|+++++..+...+.. ...| +++|+||||||||++++.+++.+++... .++.+++++........
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~-------~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 86 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIR 86 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhC-------CCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHH
Confidence 35688999999998887752 1112 6899999999999999999999865432 34444443321110000
Q ss_pred hhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
..+.+... ..+..||+|||+|.+....++.|++.++.. ..++.+|+++|
T Consensus 87 ---------------~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-----------~~~~~lIl~~~ 140 (319)
T PRK00440 87 ---------------NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQNTRFILSCN 140 (319)
T ss_pred ---------------HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-----------CCCCeEEEEeC
Confidence 01111111 133569999999999999999999999752 23566788777
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
.. ..+.+++.+|+ ..+.|+|++.+++..++...+.. .| +.
T Consensus 141 ~~------------------------------~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~-------~~--~~ 180 (319)
T PRK00440 141 YS------------------------------SKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAEN-------EG--IE 180 (319)
T ss_pred Cc------------------------------cccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHH-------cC--CC
Confidence 51 12334577888 57999999999999888877643 33 56
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQ 908 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~ 908 (973)
++++++++|+... .+ ..|.+.+.++
T Consensus 181 i~~~al~~l~~~~-~g--d~r~~~~~l~ 205 (319)
T PRK00440 181 ITDDALEAIYYVS-EG--DMRKAINALQ 205 (319)
T ss_pred CCHHHHHHHHHHc-CC--CHHHHHHHHH
Confidence 8999999999863 22 2455444444
No 275
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.35 E-value=2.2e-11 Score=143.91 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=137.5
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCC-------CCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDP-------HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~-------~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
.+..+.+.+...++|++.++..+.-++- |...+ -+.-.|+||+|+||||||++|+.+++.+.+. .++
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~----gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~ 266 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLF----GGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYT 266 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHh----CCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEc
Confidence 3456677788899999988777755543 21111 1111289999999999999999999987321 222
Q ss_pred Ee---ccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcE
Q 002068 712 RI---DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRT 787 (973)
Q Consensus 712 ~i---~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~ 787 (973)
.. ++..+... .+..+ ..|.. ..-.+.+..+.+++++|||++++++..|..|+++|+.+.++... |..
T Consensus 267 ~~~~~~~~~l~~~-----~~~~~--~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~ 337 (509)
T smart00350 267 TGKGSSAVGLTAA-----VTRDP--ETREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGIT 337 (509)
T ss_pred CCCCCCcCCcccc-----ceEcc--CcceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEE
Confidence 21 22222110 00000 01100 01123455677899999999999999999999999999887643 655
Q ss_pred Eecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEc-CCCCHHHHHHHHHHHH
Q 002068 788 VSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF-QPLDRDQISSIVRLQL 865 (973)
Q Consensus 788 v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f-~~l~~~~l~~I~~~~l 865 (973)
..++ ++.||+|+|+-...... . ..+ .+ .-.++|++++|||.++.+ .+++.+.-.+|+...+
T Consensus 338 ~~l~~~~~viAa~NP~~g~y~~-------~----~~~----~~--n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 338 TTLNARCSVLAAANPIGGRYDP-------K----LTP----EE--NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEecCCcEEEEEeCCCCcccCC-------C----cCh----hh--ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 5554 88999999984221100 0 000 00 114789999999986544 6677776667776544
Q ss_pred HHH--------------------HHHH--HhcCCceecCHHHHHHHHhc
Q 002068 866 DRV--------------------QKRI--ADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 866 ~~~--------------------~~~~--~~~~~~l~~~~~a~~~L~~~ 892 (973)
+.. .+.+ .+..+...+++++.++|.++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~ 449 (509)
T smart00350 401 DLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKA 449 (509)
T ss_pred HhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 221 1111 11124567899999998875
No 276
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.35 E-value=2.2e-11 Score=136.93 Aligned_cols=231 Identities=18% Similarity=0.315 Sum_probs=140.7
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
+.+++.++.++.+...+... .+++|+||||||||++|+.+|..+.+ ...+..+++-.+...++...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHh
Confidence 45777777777777666521 16999999999999999999999864 3345667777777777777777
Q ss_pred -CCCCCccccccc-chhhHHH---HhC--CCeEEEEccccccCHH-HHHHHHHhhcCCe------Eec----CCCcEEe-
Q 002068 729 -GAPPGYVGYEEG-GQLTEVV---RRR--PYAVILFDEIEKAHSD-VFNVFLQILDDGR------VTD----SQGRTVS- 789 (973)
Q Consensus 729 -G~~~g~~g~~~~-~~l~~~~---~~~--~~~Vl~lDEid~l~~~-v~~~Ll~~le~g~------~~~----~~g~~v~- 789 (973)
|..|+++|+... +.+.+++ ... .+.|||||||++++.+ ++..++++||.+. +.. ..+..+.
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 666777776532 3343333 332 3589999999999965 7899999998641 111 1122222
Q ss_pred ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCC-CCHHHHHHH--------
Q 002068 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP-LDRDQISSI-------- 860 (973)
Q Consensus 790 ~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~-l~~~~l~~I-------- 860 (973)
..|+.||+|+|..... ...++++|+.|| ..|.+.| ++...+++.
T Consensus 323 P~Nl~IIgTMNt~Drs--------------------------~~~lD~AlrRRF-~fi~i~p~~~~~~~~~~l~~~~~~~ 375 (459)
T PRK11331 323 PENVYIIGLMNTADRS--------------------------LAVVDYALRRRF-SFIDIEPGFDTPQFRNFLLNKKAEP 375 (459)
T ss_pred CCCeEEEEecCccccc--------------------------hhhccHHHHhhh-heEEecCCCChHHHHHHHHhcccCc
Confidence 3599999999983211 113678999999 5566665 554333222
Q ss_pred -----HHHHHHHHHHHHHhc----CCceecCHHHHHHHHhcCCC-CCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 861 -----VRLQLDRVQKRIADR----KMKMQVTDAAIQLLGSLGYD-PNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 861 -----~~~~l~~~~~~~~~~----~~~l~~~~~a~~~L~~~~~~-~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
+...|..+++++... |....+-.+ ++....-+ .......|.++++..|...|-+++..
T Consensus 376 ~~~~~l~~~l~~LN~~I~~~~~~lg~~~~IGhs---yf~~~~~~~~~~~~~~l~~i~~~~I~PlL~EY~~d 443 (459)
T PRK11331 376 SFVESLCQKMNELNQEISKEATILGKGFRIGHS---YFCCGLEDGTSPDTQWLKEIVMTDIAPLLEEYFFD 443 (459)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhccCCCeEEeee---eeccccccccchhHHHHHHHHHhhhhhhHHHHcCC
Confidence 233455555555431 222222221 11110000 00112456777777777777776654
No 277
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=6.9e-12 Score=138.52 Aligned_cols=214 Identities=18% Similarity=0.254 Sum_probs=126.8
Q ss_pred cCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCccc-------CC------------
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL-------MN------------ 311 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l-------~~------------ 311 (973)
|-.|+.++|++..++.++-.+......|+||.|+||||||++|++++..+..-...+.+ .+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 44678899999999988765433445789999999999999999999998431111100 00
Q ss_pred ----CeEEEEEcccccccccccch--HHHHHHH---HHH-HHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc
Q 002068 312 ----RKLISLDMGALIAGAKYRGE--FEDRLKA---VLK-EVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG 381 (973)
Q Consensus 312 ----~~~~~l~~~~~~~g~~~~g~--~e~~l~~---~~~-~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~ 381 (973)
.+++.+..+ .......|. ++..+.. .+. .......+++||+||++.+. ...++.|...++
T Consensus 84 ~~~~~p~~~~p~~--~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------~~~q~~Lle~me 153 (334)
T PRK13407 84 IERPTPVVDLPLG--VTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------DHIVDLLLDVAQ 153 (334)
T ss_pred cccCCccccCCCC--CCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------HHHHHHHHHHHH
Confidence 111111100 000001110 1111100 000 00011234699999999987 557777888876
Q ss_pred CC---------------CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCH-HHHHHHHHHHHHH------H----
Q 002068 382 RG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRER------Y---- 434 (973)
Q Consensus 382 ~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~-~e~~~il~~~~~~------~---- 434 (973)
.+ ++.+|+++|+.+. .+.+++..||. .|.++.|.. +++.+|++..... +
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~----~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~ 229 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKW 229 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccc
Confidence 54 4677888887552 58899999997 688888855 8888888653210 0
Q ss_pred ---------------hhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhh
Q 002068 435 ---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKM 480 (973)
Q Consensus 435 ---------------~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~ 480 (973)
..-.+|.++++.+.++++++...-.. -|.-.+.++..|.+.+.+
T Consensus 230 ~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~--s~Ra~i~l~~aA~a~A~l 288 (334)
T PRK13407 230 GAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD--GLRGELTLLRAARALAAF 288 (334)
T ss_pred cccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHH
Confidence 00124667788887777776543222 244445566655555544
No 278
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.2e-12 Score=144.66 Aligned_cols=166 Identities=23% Similarity=0.370 Sum_probs=123.8
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCC----CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSD----PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 722 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~----~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~ 722 (973)
.+.+|.|.+++++.+.+.+...+....+ .+=|. .+|++||||||||.||+++|.+. +-||..+..|++.+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem- 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM- 222 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh-
Confidence 3577999999999888887654321110 12233 59999999999999999999888 899999999998664
Q ss_pred hhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEecCCCcEE
Q 002068 723 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 723 ~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
++|- |....+.+++..+++.+||+||||||.... ..+|+||.-||.-.
T Consensus 223 ----fVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--------- 284 (596)
T COG0465 223 ----FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------- 284 (596)
T ss_pred ----hcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC---------
Confidence 2332 333345777888877779999999998752 37888888887411
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
.-..+++|+.||. .+.++|+|+ +|||..|....++-...++|++-++
T Consensus 285 ~~~gviviaaTNR------------------------------pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 285 GNEGVIVIAATNR------------------------------PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CCCceEEEecCCC------------------------------cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 1135678888887 233455665 8999999999999999999988655
No 279
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=2.3e-11 Score=129.51 Aligned_cols=163 Identities=15% Similarity=0.197 Sum_probs=108.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||+|||||+|++++++.+...+..+.++++...... . ..+.+.+... .+|+||||
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-------------~-----~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-------------V-----PEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-------------h-----HHHHHHhhhC--CEEEEeCh
Confidence 69999999999999999999988544445555555442110 0 1122223332 49999999
Q ss_pred cccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
+.+. +..+..|..+++... +..++.+|+||+..+..+ ..+.|+
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l--------------------------~~~~~~ 151 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQL--------------------------NLGLPD 151 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHc--------------------------CcccHH
Confidence 9885 444445545543210 001234777777643222 124678
Q ss_pred hhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 839 FMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 839 ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
|.+|+. .++.+.|++.+++.++++..... .| +.+++++++||+.. ++.. +|.+...+++.
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~-------~~--~~l~~~v~~~L~~~-~~~d--~r~l~~~l~~l 213 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARL-------RG--FELPEDVGRFLLKR-LDRE--MRTLFMTLDQL 213 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-hcCC--HHHHHHHHHHH
Confidence 999995 68999999999999998764422 33 78999999999995 4443 68888888774
No 280
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=3.4e-11 Score=127.98 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=111.7
Q ss_pred cCCCCCCC-CchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc
Q 002068 251 AGKLDPVI-GRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 251 ~~~l~~ii-G~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+.+|++++ |.+..+...+..+.. ....+++|+||+|||||+||+++++.+... +..++.+++.....
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~--- 83 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLL--- 83 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHH---
Confidence 34677766 444444444544433 345678999999999999999999987443 55677777655421
Q ss_pred ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHH
Q 002068 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 328 ~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~ 407 (973)
.+.. .....+|+|||+|.+.... ......++...-+.+...+|.+++..+- ...+.+.+.
T Consensus 84 -----------~~~~---~~~~~~liiDdi~~l~~~~----~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~L~ 143 (227)
T PRK08903 84 -----------AFDF---DPEAELYAVDDVERLDDAQ----QIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLREDLR 143 (227)
T ss_pred -----------HHhh---cccCCEEEEeChhhcCchH----HHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHHHH
Confidence 0111 1234589999999885321 1222333333334666545555554431 124568899
Q ss_pred ccC---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 408 RRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 408 ~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
+|| ..|.+++|+.++...+++.+.. ..++.++++++.+++..+.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~----~~~v~l~~~al~~L~~~~~ 190 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAA----ERGLQLADEVPDYLLTHFR 190 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcc
Confidence 887 3789999998888887776655 3679999999999988664
No 281
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=4.2e-11 Score=140.09 Aligned_cols=186 Identities=17% Similarity=0.287 Sum_probs=120.1
Q ss_pred CCCCCC-CchH--HHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc
Q 002068 253 KLDPVI-GRDD--EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 253 ~l~~ii-G~~~--~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+|++++ |... ....+..+.... ..++++|+||||+|||+|++++++.+.... .+..++.+++..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH--
Confidence 677744 5433 233333332221 224578999999999999999999985432 1567888877655321
Q ss_pred ccchHHH-HHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHH
Q 002068 328 YRGEFED-RLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 406 (973)
Q Consensus 328 ~~g~~e~-~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al 406 (973)
+.+.... ....+.+.+. ..-+|+|||+|.+.+... ...++..++....+.+..++|+++..+..- -.+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~---~~dlLiiDDi~~l~~~~~--~~~~l~~~~n~l~~~~~~iiits~~~p~~l--~~l~~~l 265 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR---SVDVLLIDDIQFLAGKER--TQEEFFHTFNALHEAGKQIVLTSDRPPKEL--PGLEERL 265 (450)
T ss_pred HHHHHHcCcHHHHHHHHh---cCCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCcEEEECCCCHHHH--HHHHHHH
Confidence 1111111 1122223332 234999999999864321 123455666667777776666665544321 1267999
Q ss_pred HccCc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 407 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 407 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
.+||. .+.|.+|+.+++.+|++..+.. .++.++++++++++..+.+
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCC
Confidence 99995 5899999999999999988774 5788999999999887753
No 282
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.33 E-value=4.2e-11 Score=144.28 Aligned_cols=194 Identities=14% Similarity=0.168 Sum_probs=123.8
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHc-----c-CC------CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRA-----G-LS------DPHRPIASFMFMGPTGVGKTELAKALASYMFNT 706 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~-----~-~~------~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~ 706 (973)
.+..+...+-..|+|++.++..|.-++-.... + .. ..-|.-.|+||+|+||||||.+|+.+++...+.
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 34556677888999999999888666532110 0 00 011222389999999999999999999976432
Q ss_pred ----CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEec
Q 002068 707 ----EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD 782 (973)
Q Consensus 707 ----~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~ 782 (973)
+.++..++|...... .+...|-.. .-.+++..+.+++++|||++++++..|..|+++|+.+.++.
T Consensus 520 ~ytsG~~~s~vgLTa~~~~------~d~~tG~~~-----le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI 588 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIKF------NESDNGRAM-----IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTI 588 (915)
T ss_pred ccCCCCCCccccccchhhh------cccccCccc-----ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEE
Confidence 355666666543210 111011110 11235567788999999999999999999999999999876
Q ss_pred CC-CcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEE-cCCCCHHHHHH
Q 002068 783 SQ-GRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIV-FQPLDRDQISS 859 (973)
Q Consensus 783 ~~-g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~-f~~l~~~~l~~ 859 (973)
.. |....++ ++.||+++|+-........ .+.+ .-.|+|+|++|||.++. +.+++.+.=..
T Consensus 589 ~KaGi~~tL~ar~rVIAAaNP~~gryd~~~-----------s~~e------ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~ 651 (915)
T PTZ00111 589 AKAGIVATLKAETAILASCNPINSRYNKNK-----------AVIE------NINISPSLFTRFDLIYLVLDHIDQDTDQL 651 (915)
T ss_pred ecCCcceecCCCeEEEEEcCCcccccCccc-----------Cccc------ccCCChHHhhhhcEEEEecCCCChHHHHH
Confidence 54 5555554 8999999998432211100 0000 12378999999998644 45555443333
Q ss_pred H
Q 002068 860 I 860 (973)
Q Consensus 860 I 860 (973)
|
T Consensus 652 l 652 (915)
T PTZ00111 652 I 652 (915)
T ss_pred H
Confidence 3
No 283
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.32 E-value=3.4e-12 Score=118.40 Aligned_cols=106 Identities=30% Similarity=0.464 Sum_probs=67.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCC-----CcccccccchhhHHHHhCCCeEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP-----GYVGYEEGGQLTEVVRRRPYAVI 755 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~-----g~~g~~~~~~l~~~~~~~~~~Vl 755 (973)
|+||.|+||+|||++|+++|+.+ +..|.+|.+..- ...++++|.+- +...+.. +.++ ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpd---llPsDi~G~~v~~~~~~~f~~~~-GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPD---LLPSDILGFPVYDQETGEFEFRP-GPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE--TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCC---CCcccceeeeeeccCCCeeEeec-Chhh-------hcee
Confidence 58999999999999999999999 677888877522 23455565421 1111111 1111 2499
Q ss_pred EEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccC-EEEEEecCC
Q 002068 756 LFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN-TVIIMTSNV 801 (973)
Q Consensus 756 ~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~-~iiI~tsN~ 801 (973)
++|||..++|.+|+.||++|++++++.. |....+++ .+||+|.|+
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-T
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCc
Confidence 9999999999999999999999999864 66677764 788999997
No 284
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.32 E-value=1.5e-11 Score=147.17 Aligned_cols=117 Identities=14% Similarity=0.190 Sum_probs=82.8
Q ss_pred hHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcE---------E-eccCEEEEEecCCChhhhhccCCCC
Q 002068 744 TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT---------V-SFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 744 ~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~---------v-~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
.+.+.++.+++|||||++.+++..|..|+++|++|++....+.. . ...++.+|+++|...
T Consensus 210 ~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---------- 279 (608)
T TIGR00764 210 AGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---------- 279 (608)
T ss_pred CCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH----------
Confidence 45566888999999999999999999999999999877643211 1 113778999999720
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccc---eEEEcCCC---CHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHH
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQPL---DRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQ 887 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d---~~i~f~~l---~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~ 887 (973)
...++|+|++||+ ..+.|++. +.+...++++ .+.+.+...|....++++++.
T Consensus 280 ------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~----~i~~~~~r~G~l~~~s~~Av~ 337 (608)
T TIGR00764 280 ------------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ----FVAQEVKKDGRIPHFTRDAVE 337 (608)
T ss_pred ------------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH----HHHHHHHHhCCCCcCCHHHHH
Confidence 2348899999998 66666543 4555555433 233344445445589999999
Q ss_pred HHHhc
Q 002068 888 LLGSL 892 (973)
Q Consensus 888 ~L~~~ 892 (973)
.|.++
T Consensus 338 ~Li~~ 342 (608)
T TIGR00764 338 EIVRE 342 (608)
T ss_pred HHHHH
Confidence 98864
No 285
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.32 E-value=5e-11 Score=126.62 Aligned_cols=188 Identities=16% Similarity=0.204 Sum_probs=119.2
Q ss_pred CCCCCCC--chHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccc
Q 002068 253 KLDPVIG--RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (973)
Q Consensus 253 ~l~~iiG--~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g 330 (973)
+|+++++ .+..++.+.+.+......+++|+||+|||||++|+.+++..... +.+++.+++..+...
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~----- 80 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA----- 80 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh-----
Confidence 5666663 34456666655445566789999999999999999999987432 457788887766421
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccC-HHHHcc
Q 002068 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKD-PALERR 409 (973)
Q Consensus 331 ~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d-~al~~R 409 (973)
...++..+. ...+|+|||+|.+..... .......++....+.+. .+|.+++.... . .... +.+.+|
T Consensus 81 -----~~~~~~~~~---~~~lLvIDdi~~l~~~~~--~~~~L~~~l~~~~~~~~-~iIits~~~~~-~-~~~~~~~L~~r 147 (226)
T TIGR03420 81 -----DPEVLEGLE---QADLVCLDDVEAIAGQPE--WQEALFHLYNRVREAGG-RLLIAGRAAPA-Q-LPLRLPDLRTR 147 (226)
T ss_pred -----HHHHHhhcc---cCCEEEEeChhhhcCChH--HHHHHHHHHHHHHHcCC-eEEEECCCChH-H-CCcccHHHHHH
Confidence 123333332 234999999999864210 01223333333333444 45555554321 1 1233 788888
Q ss_pred Cc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHH
Q 002068 410 FQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 410 f~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
|. .|.+++|+.+++..+++....+ .++.++++++..++..+.+- +..+..+++.+-
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~gn------~r~L~~~l~~~~ 206 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSRD------MGSLMALLDALD 206 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCC------HHHHHHHHHHHH
Confidence 74 6889999999999998776553 47889999999888865432 345556655544
No 286
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=6.6e-11 Score=138.33 Aligned_cols=161 Identities=15% Similarity=0.190 Sum_probs=108.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHH-HHHHHHHHHHHhCCCeEEEEc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED-RLKAVLKEVTESEGQIILFID 355 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~-~l~~~~~~~~~~~~~~ILfiD 355 (973)
++++|+|++|+|||+|++++++++.... .+..++.+++..+... +...... .+..+.+.+. ..-+|+||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~e--l~~al~~~~~~~f~~~y~---~~DLLlID 384 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNE--FINSIRDGKGDSFRRRYR---EMDILLVD 384 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--HHHHHHhccHHHHHHHhh---cCCEEEEe
Confidence 4478999999999999999999984421 2567888877665421 1111111 1112222222 23499999
Q ss_pred cccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHH
Q 002068 356 EIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 356 Ei~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~ 432 (973)
||+.+.+.. .....+.+++....+.++-+|| +++..+. ..-.+++.|.+||. .+.|..|+.+.+.+||+..+.
T Consensus 385 DIq~l~gke--~tqeeLF~l~N~l~e~gk~III-TSd~~P~-eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 385 DIQFLEDKE--STQEEFFHTFNTLHNANKQIVL-SSDRPPK-QLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred hhccccCCH--HHHHHHHHHHHHHHhcCCCEEE-ecCCChH-hhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 999886432 1234566777777776655555 4443321 11247899999995 579999999999999988776
Q ss_pred HHhhhcCCccCHHHHHHHHHhcc
Q 002068 433 RYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 433 ~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
. .++.++++++++++....
T Consensus 461 ~----r~l~l~~eVi~yLa~r~~ 479 (617)
T PRK14086 461 Q----EQLNAPPEVLEFIASRIS 479 (617)
T ss_pred h----cCCCCCHHHHHHHHHhcc
Confidence 4 688999999999987764
No 287
>PRK08727 hypothetical protein; Validated
Probab=99.31 E-value=7.9e-11 Score=125.16 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=119.5
Q ss_pred CCCCCCCch-HHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccch
Q 002068 253 KLDPVIGRD-DEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331 (973)
Q Consensus 253 ~l~~iiG~~-~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~ 331 (973)
+|+.+++.. ..+..+.........+.++|+||+|||||+|+++++..+... +..+..+++...
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~--------- 80 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAA--------- 80 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHh---------
Confidence 566666544 334333333323334558999999999999999999987543 445555554332
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccC-
Q 002068 332 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF- 410 (973)
Q Consensus 332 ~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf- 410 (973)
...+...++.+.. .-+|+|||+|.+.+... ......+++....+++ ..+|.+++..+. ..-..++.+.+||
T Consensus 81 -~~~~~~~~~~l~~---~dlLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~SRl~ 152 (233)
T PRK08727 81 -AGRLRDALEALEG---RSLVALDGLESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLRSRLA 152 (233)
T ss_pred -hhhHHHHHHHHhc---CCEEEEeCcccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHHHHHh
Confidence 2234445555532 33999999998874321 1223334444444444 445555553331 1123579999995
Q ss_pred --ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHH
Q 002068 411 --QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (973)
Q Consensus 411 --~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a 474 (973)
..+.+++|+.+++.+|++..+.. .++.++++++.+++..+.|-+ ..++.+++..
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~------r~~l~~L~~l 208 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL------AGLVALLDRL 208 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 46899999999999999886664 478999999999999886432 2455555543
No 288
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.31 E-value=2.9e-11 Score=146.41 Aligned_cols=163 Identities=26% Similarity=0.412 Sum_probs=113.8
Q ss_pred cccccchHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccch
Q 002068 649 KRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 721 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~ 721 (973)
.++.|.+.++..+.+.+.... .+.. -|. ++||+||||||||++|++++..+ +.+|+.++++++...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~---~~~-gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~ 224 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGK---IPK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM 224 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCC-cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh
Confidence 445566666666655554321 1111 122 59999999999999999999998 788999999887542
Q ss_pred hhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEecCCCcE
Q 002068 722 HAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 722 ~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
+.|... .....++..++...++||||||||.+.. .+++.||..||. . .
T Consensus 225 -----~~g~~~-----~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg-~-~------ 286 (644)
T PRK10733 225 -----FVGVGA-----SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-F-E------ 286 (644)
T ss_pred -----hhcccH-----HHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-c-c------
Confidence 222211 1112445556667789999999998732 266777777763 1 1
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
....++||+|||. ...++|+++ +|||..|.|+.|+.++..+|+..++
T Consensus 287 -~~~~vivIaaTN~------------------------------p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 287 -GNEGIIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred -CCCCeeEEEecCC------------------------------hhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 1236789999998 334677777 5999999999999999999999887
Q ss_pred HH
Q 002068 866 DR 867 (973)
Q Consensus 866 ~~ 867 (973)
.+
T Consensus 336 ~~ 337 (644)
T PRK10733 336 RR 337 (644)
T ss_pred hc
Confidence 54
No 289
>PRK05642 DNA replication initiation factor; Validated
Probab=99.31 E-value=5.7e-11 Score=126.29 Aligned_cols=163 Identities=13% Similarity=0.263 Sum_probs=115.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||+|||||+|++++++.+...+..++++++.++.... ..+.+.+... .+|+||++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~------------------~~~~~~~~~~--d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG------------------PELLDNLEQY--ELVCLDDL 106 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh------------------HHHHHhhhhC--CEEEEech
Confidence 689999999999999999998876555677888877654310 1233444444 49999999
Q ss_pred cccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
+... +..+..|+.+++.-. -.+..+|+|++..+..+ ..+.|+
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~~----------~~g~~ilits~~~p~~l--------------------------~~~~~~ 150 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLR----------DSGRRLLLAASKSPREL--------------------------PIKLPD 150 (234)
T ss_pred hhhcCChHHHHHHHHHHHHHH----------hcCCEEEEeCCCCHHHc--------------------------CccCcc
Confidence 9775 466777888886411 11345777877644222 124678
Q ss_pred hhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 839 FMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 839 ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
|.+|+. .++.+.+++.+++..+++..... . .+.+++++++||++. ++.. +|.+...++++.
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~-------~--~~~l~~ev~~~L~~~-~~~d--~r~l~~~l~~l~ 213 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASR-------R--GLHLTDEVGHFILTR-GTRS--MSALFDLLERLD 213 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHH
Confidence 999994 67889999999999998864422 2 377999999999995 4433 688888887754
No 290
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=4.9e-11 Score=136.33 Aligned_cols=217 Identities=21% Similarity=0.305 Sum_probs=130.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC------CcceEEeccccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT------EEALVRIDMSEYME 720 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~------~~~~~~i~~~~~~~ 720 (973)
..+.++|.+..++.|...+.....+. .| ++++++||||||||++++.+.+.+... ...+++++|..+..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~----~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGS----RP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCC----CC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 34679999999999999988654432 22 269999999999999999999877321 14688999987654
Q ss_pred hhhh-----hhhc--CCCCCccccccc---chhhHHHH-hCCCeEEEEccccccC---HHHHHHHHHhhcCCeEecCCCc
Q 002068 721 KHAV-----SRLI--GAPPGYVGYEEG---GQLTEVVR-RRPYAVILFDEIEKAH---SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 721 ~~~~-----~~l~--G~~~g~~g~~~~---~~l~~~~~-~~~~~Vl~lDEid~l~---~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
.... ..+. |......+.... ..+.+.+. ..+..||+|||+|.+. .+++..|+.+.+...
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~------- 160 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD------- 160 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-------
Confidence 3222 2232 322111221111 12233333 2345689999999994 334444444322211
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCHHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~~~l~~I~~~~l 865 (973)
....++.+|+++|.-. . ...+.+.+.+||. ..|.|+|++.+++.+|+...+
T Consensus 161 -~~~~~v~lI~i~n~~~-~--------------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 161 -LDNAKVGVIGISNDLK-F--------------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred -CCCCeEEEEEEECCcc-h--------------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 1124577888887611 0 1224455566664 579999999999999999877
Q ss_pred HHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 866 DRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 866 ~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.. .+ . .-.++++++++++.........+|.....++.+
T Consensus 213 ~~---~~--~--~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 213 EK---AF--Y--DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred Hh---hc--c--CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 42 01 1 224889988887764321112245444444443
No 291
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.30 E-value=2.4e-11 Score=144.53 Aligned_cols=120 Identities=9% Similarity=0.126 Sum_probs=85.5
Q ss_pred hHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCc----------EEeccCEEEEEecCCChhhhhccCCCC
Q 002068 744 TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR----------TVSFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 744 ~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~----------~v~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
.+.+.++.+++|||||++.+++..|..|+++|++|++....+. ..-..++.+|+++|...
T Consensus 219 ~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---------- 288 (637)
T PRK13765 219 AGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---------- 288 (637)
T ss_pred CCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH----------
Confidence 4456688899999999999999999999999999987653221 01113678999999831
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccc---eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHH
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLG 890 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d---~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~ 890 (973)
...++|+|++||. ..+.|.+-.. +..+....++..+.+.+...|-...++++++..|.
T Consensus 289 ------------------l~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI 349 (637)
T PRK13765 289 ------------------LENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEII 349 (637)
T ss_pred ------------------HHhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 2235788888885 4566665433 44455666666666666665445689999999998
Q ss_pred hc
Q 002068 891 SL 892 (973)
Q Consensus 891 ~~ 892 (973)
++
T Consensus 350 ~~ 351 (637)
T PRK13765 350 RE 351 (637)
T ss_pred HH
Confidence 85
No 292
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=2.3e-11 Score=132.23 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=116.6
Q ss_pred chHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHH----
Q 002068 260 RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR---- 335 (973)
Q Consensus 260 ~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~---- 335 (973)
..+.++.++..+.. ..+++|.||||||||++++.+|+.+ +.+++.+++..........|...-.
T Consensus 50 ~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~~g 117 (327)
T TIGR01650 50 DKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLKDG 117 (327)
T ss_pred CHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeeccCC
Confidence 33455556665533 4589999999999999999999999 8899999877665544444431100
Q ss_pred ------HHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC----------------CCEEEEEccCc
Q 002068 336 ------LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR----------------GELRCIGATTL 393 (973)
Q Consensus 336 ------l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~----------------g~i~iI~at~~ 393 (973)
....+-.+.. .+++|++||++... .++++.|..+|+. ..+++|+|+|+
T Consensus 118 ~~~~~f~~GpL~~A~~--~g~illlDEin~a~--------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 118 KQITEFRDGILPWALQ--HNVALCFDEYDAGR--------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred cceeEEecCcchhHHh--CCeEEEechhhccC--------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 1112333332 46789999999886 4566666666652 25789999998
Q ss_pred hH-------HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhc
Q 002068 394 DE-------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (973)
Q Consensus 394 ~~-------~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s 454 (973)
.+ |.....++.++++||. .+.+..|+.++-.+|+......+ ....++..++++++++
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~----~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGF----DDTEGKDIINAMVRVA 252 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCC----CccchHHHHHHHHHHH
Confidence 76 7777889999999997 46899999999999886543211 1111345566666655
No 293
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=8.5e-11 Score=125.32 Aligned_cols=213 Identities=21% Similarity=0.246 Sum_probs=142.6
Q ss_pred CCCchH---HHHHHHHHh---ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc--------
Q 002068 257 VIGRDD---EIRRCIQIL---SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL-------- 322 (973)
Q Consensus 257 iiG~~~---~i~~li~~l---~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~-------- 322 (973)
.||... .++++-+.+ .+...+|+||+|++|.|||++++.+++......-++ ....+++.+.+...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHHHH
Confidence 566542 344444444 345568899999999999999999998765433222 23468888886433
Q ss_pred ------cccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHH
Q 002068 323 ------IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEY 396 (973)
Q Consensus 323 ------~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~ 396 (973)
....+...........++.-++. -+.-+|+|||+|.+.. |.......+.|.||.+.+.-++.+|+++|.+.+
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~-~~vrmLIIDE~H~lLa-Gs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRR-LGVRMLIIDEFHNLLA-GSYRKQREFLNALKFLGNELQIPIVGVGTREAY 192 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHH-cCCcEEEeechHHHhc-ccHHHHHHHHHHHHHHhhccCCCeEEeccHHHH
Confidence 11111122222222222333332 3455999999999873 333345678899999888889999999999987
Q ss_pred HhhhccCHHHHccCceEEecCCC-HHHHHHHHHHHHHHHhhhcCCccCH-HHHHHHHHhcccccCCCCCchHHHHHHHHH
Q 002068 397 RKYIEKDPALERRFQQVYVDQPN-VEDTISILRGLRERYELHHGVRISD-SALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (973)
Q Consensus 397 ~~~~~~d~al~~Rf~~i~~~~p~-~~e~~~il~~~~~~~~~~~~v~i~~-~~l~~l~~~s~~~i~~r~~p~~a~~lld~a 474 (973)
.- +.-|+.+.+||+.+.++... .++-..++..+...+.......+.+ +....+...|.+.++ ....++..|
T Consensus 193 ~a-l~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG------~l~~ll~~a 265 (302)
T PF05621_consen 193 RA-LRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG------ELSRLLNAA 265 (302)
T ss_pred HH-hccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH------HHHHHHHHH
Confidence 64 67899999999999998874 4556666777777666655555655 445788899987765 566777777
Q ss_pred Hhhhh
Q 002068 475 AAKLK 479 (973)
Q Consensus 475 ~~~~~ 479 (973)
+..+.
T Consensus 266 A~~AI 270 (302)
T PF05621_consen 266 AIAAI 270 (302)
T ss_pred HHHHH
Confidence 65543
No 294
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=3.5e-11 Score=134.59 Aligned_cols=180 Identities=20% Similarity=0.316 Sum_probs=117.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----ceE-Eeccccccchh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEKH 722 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~~ 722 (973)
+..++||++++..+..++...+ -...+||+||+|+|||++|+.+|+.+.+... +.. ...|...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr--------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c---- 89 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK--------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS---- 89 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC--------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC----
Confidence 3679999999999988887422 1125999999999999999999999976321 111 1112111
Q ss_pred hhhhhc--CCCCC-----------------cccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCe
Q 002068 723 AVSRLI--GAPPG-----------------YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGR 779 (973)
Q Consensus 723 ~~~~l~--G~~~g-----------------~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~ 779 (973)
...+++ |..|. .++.++...+.+.+. ...+.|++|||+|.+++..+|.||..||+
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-- 167 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-- 167 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc--
Confidence 011111 11111 111122222333333 24567999999999999999999999987
Q ss_pred EecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHH
Q 002068 780 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 859 (973)
Q Consensus 780 ~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~ 859 (973)
...+++||+.|+. ...+.|.+.+|| ..+.|+|++.+++.+
T Consensus 168 ---------pp~~~~fiLit~~------------------------------~~~llptIrSRc-~~i~l~pl~~~~~~~ 207 (351)
T PRK09112 168 ---------PPARALFILISHS------------------------------SGRLLPTIRSRC-QPISLKPLDDDELKK 207 (351)
T ss_pred ---------CCCCceEEEEECC------------------------------hhhccHHHHhhc-cEEEecCCCHHHHHH
Confidence 2246677666654 122457899999 799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 860 IVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 860 I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
++.... ....+++++++.+++.
T Consensus 208 ~L~~~~-----------~~~~~~~~~~~~i~~~ 229 (351)
T PRK09112 208 ALSHLG-----------SSQGSDGEITEALLQR 229 (351)
T ss_pred HHHHhh-----------cccCCCHHHHHHHHHH
Confidence 887621 1112667777666654
No 295
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=4.9e-11 Score=126.73 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=112.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||+|||||+|+.++++.+...+...+++++.++.... ....+.+.. ..+|+|||+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~l~~--~dlLiIDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRL------------------RDALEALEG--RSLVALDGL 102 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhH------------------HHHHHHHhc--CCEEEEeCc
Confidence 699999999999999999999886656666777665532210 011222222 349999999
Q ss_pred cccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
+.+. +..+..|+.+++...- ...-+|+|+|..+..+. .+.|+
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~--------------------------~~~~d 146 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRARA----------AGITLLYTARQMPDGLA--------------------------LVLPD 146 (233)
T ss_pred ccccCChHHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhh--------------------------hhhHH
Confidence 9885 4556677777764210 12348888887443321 24578
Q ss_pred hhccc--ceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 839 FMNRV--DEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 839 ll~R~--d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.+|+ ..++.|+|++.+++..|++..... . .+.++++++++|++. .+. ..|.+.+.++.+.
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~--~l~l~~e~~~~La~~-~~r--d~r~~l~~L~~l~ 209 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQR-------R--GLALDEAAIDWLLTH-GER--ELAGLVALLDRLD 209 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-CCC--CHHHHHHHHHHHH
Confidence 88886 358999999999999999976533 2 478999999999996 332 2566666676644
No 296
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.5e-11 Score=130.24 Aligned_cols=210 Identities=18% Similarity=0.288 Sum_probs=141.6
Q ss_pred ccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
+.++-|.+.+++++...+... ..++. +|.-.+|++||||||||++|+++|+.. +.+|+-+.++.++
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll---~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt 164 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLL---RPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLT 164 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccc---cCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccc
Confidence 456777777777777666321 11111 233369999999999999999999999 8899999999997
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-------H----HHHHHHHHhhcCCeEecCCCcEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-------S----DVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-------~----~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
+++ +|....++. .++....+-.+++|||||||.+- . ..-+.|...+| |-.++.
T Consensus 165 ~KW-----fgE~eKlv~-----AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~~----- 228 (386)
T KOG0737|consen 165 SKW-----FGEAQKLVK-----AVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSKD----- 228 (386)
T ss_pred hhh-----HHHHHHHHH-----HHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCCC-----
Confidence 754 454443332 44555667778999999999764 1 13455555554 333321
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRV 868 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~ 868 (973)
-..++|+.+||.+. .++.++++|+-..+.+.-++.++..+|+...|+.
T Consensus 229 -~~rVlVlgATNRP~------------------------------DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~- 276 (386)
T KOG0737|consen 229 -SERVLVLGATNRPF------------------------------DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK- 276 (386)
T ss_pred -CceEEEEeCCCCCc------------------------------cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc-
Confidence 12477888999732 2355788888888899999999999999988843
Q ss_pred HHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcC
Q 002068 869 QKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 922 (973)
Q Consensus 869 ~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~ 922 (973)
.++.-.++= +.++.. ...|..+.|+..+..+...++=+.+.++
T Consensus 277 ------e~~e~~vD~---~~iA~~--t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 277 ------EKLEDDVDL---DEIAQM--TEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred ------cccCcccCH---HHHHHh--cCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 222222222 333432 3346678899888888888887777664
No 297
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.29 E-value=3.1e-10 Score=120.44 Aligned_cols=95 Identities=21% Similarity=0.189 Sum_probs=76.2
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-CEEEEEccCch-------HHHhhhccCHHHHccCceEEecCCCH
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 420 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~i~iI~at~~~-------~~~~~~~~d~al~~Rf~~i~~~~p~~ 420 (973)
|+||||||+|.|- .+...+|.+.++.. -.++|.|||.- ++..-..++..|++|+-.|...+++.
T Consensus 292 pGVLFIDEvHmLD--------IE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLD--------IECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhhh--------HHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 6799999999996 78889999999754 45677777752 12223468899999998889889999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 421 ~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
++..+|++.-+. ..++.+++++++.++.+..
T Consensus 364 ~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 364 EEIREIIRIRAK----EEDIELSDDALEYLTDIGE 394 (450)
T ss_pred HHHHHHHHHhhh----hhccccCHHHHHHHHhhch
Confidence 999999976665 3689999999999988754
No 298
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=6.4e-11 Score=131.99 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=122.1
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccch
Q 002068 253 KLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~ 331 (973)
+|++++|++..++.+...+..+..+|+ ||+||+|+|||++|+.+++.+.+...... ...++.+... .|. . .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~-~--i 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKK-S--I 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCC-C--C
Confidence 478999999999999999877766666 89999999999999999999865432211 1223333221 111 1 1
Q ss_pred HHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhhhccCHHH
Q 002068 332 FEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPAL 406 (973)
Q Consensus 332 ~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~~~~d~al 406 (973)
..+.++.+.+.+.. .++.-|++||++|.+. ..++|.|+..+++. .+.+|.+|+..+ .+-|.+
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 12236666654432 2345699999999997 56788899999853 566666665544 577999
Q ss_pred HccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 407 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 407 ~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
++||+.+.|..|+.++....+..... .++++.+..++.++.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~ 181 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSD 181 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcC
Confidence 99999999999999997666543221 356777777777765
No 299
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.29 E-value=1.5e-10 Score=119.73 Aligned_cols=190 Identities=24% Similarity=0.337 Sum_probs=131.8
Q ss_pred CCCCCCCchHHHHHHHH----HhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccc
Q 002068 253 KLDPVIGRDDEIRRCIQ----ILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 328 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~----~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~ 328 (973)
.+++++|-+...+.+++ .+...+.+|+||+|++|||||++++++..+.... +.++++++-..+.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~----- 92 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG----- 92 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc-----
Confidence 56678998887777765 4556778999999999999999999999988443 6889998765553
Q ss_pred cchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------CEEEEEccCchHHHhh--h
Q 002068 329 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ELRCIGATTLDEYRKY--I 400 (973)
Q Consensus 329 ~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------~i~iI~at~~~~~~~~--~ 400 (973)
.+..+++.+.....+.|||+|++- +..+ ......||.+|+-| ++.+.+|+|.-...+- .
T Consensus 93 ------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 93 ------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred ------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhh
Confidence 366777877766778999999964 3332 33457788888633 7888888885432110 0
Q ss_pred c--------cC--------HHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHH-HHHHHhcccccCCCC
Q 002068 401 E--------KD--------PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSAL-VEAAILSDRYISGRF 462 (973)
Q Consensus 401 ~--------~d--------~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l-~~l~~~s~~~i~~r~ 462 (973)
+ +. -+|..||- .|.|.+|+.++-++|++.++++ .++.++++.+ ..+...+... +..
T Consensus 160 d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l~~~Al~wa~~r--g~R 233 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEELRQEALQWALRR--GGR 233 (249)
T ss_pred hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHc--CCC
Confidence 0 11 34677997 7999999999999999999875 5777775444 3344444322 122
Q ss_pred CchHHHHHHHH
Q 002068 463 LPDKAIDLVDE 473 (973)
Q Consensus 463 ~p~~a~~lld~ 473 (973)
.+..|...++.
T Consensus 234 SGRtA~QF~~~ 244 (249)
T PF05673_consen 234 SGRTARQFIDD 244 (249)
T ss_pred CHHHHHHHHHH
Confidence 34445554443
No 300
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=1e-10 Score=134.99 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=111.9
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDE 356 (973)
++++|+||+|+|||+|++++++.+... +.+++.++...+.. .+...+...-...|.... ...-+|+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~~--~~~~~l~~~~~~~f~~~~--~~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFTE--HLVSAIRSGEMQRFRQFY--RNVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHHH--HHHHHHhcchHHHHHHHc--ccCCEEEEcc
Confidence 567899999999999999999998542 56777776554321 111111000001122221 1234999999
Q ss_pred ccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHHH
Q 002068 357 IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRER 433 (973)
Q Consensus 357 i~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~ 433 (973)
+|.+.+.. ........++....+.+..+++++++.+.. +..+++.+.+||. .+.+.+|+.+++..||+..++.
T Consensus 211 iq~l~~k~--~~qeelf~l~N~l~~~~k~IIlts~~~p~~--l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 211 IEVFSGKG--ATQEEFFHTFNSLHTEGKLIVISSTCAPQD--LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred hhhhcCCh--hhHHHHHHHHHHHHHCCCcEEEecCCCHHH--HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 99986432 122344555555556676655555543332 1246799999994 6899999999999999887774
Q ss_pred HhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHH
Q 002068 434 YELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 434 ~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
.++.++++++.+++....+-++ .....++..+
T Consensus 287 ----~~~~l~~evl~~la~~~~~dir------~L~g~l~~l~ 318 (445)
T PRK12422 287 ----LSIRIEETALDFLIEALSSNVK------SLLHALTLLA 318 (445)
T ss_pred ----cCCCCCHHHHHHHHHhcCCCHH------HHHHHHHHHH
Confidence 5789999999999886653222 3445555553
No 301
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.5e-11 Score=133.80 Aligned_cols=152 Identities=20% Similarity=0.369 Sum_probs=109.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHh-CCCeEEEEcc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR-RPYAVILFDE 759 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDE 759 (973)
..||+||||||||++..|||+.| +..++-++.++..... .+..++.. .+.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~-------------------dLr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDS-------------------DLRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcH-------------------HHHHHHHhCCCCcEEEEee
Confidence 49999999999999999999999 7778888887765443 34444443 3457999999
Q ss_pred ccccCH------------------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHH
Q 002068 760 IEKAHS------------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYE 821 (973)
Q Consensus 760 id~l~~------------------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~ 821 (973)
||..-. -.+..||..+|.=- . +.| ..-|||||||.
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw-S-scg-----~ERIivFTTNh-------------------- 347 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW-S-SCG-----DERIIVFTTNH-------------------- 347 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcccc-c-cCC-----CceEEEEecCC--------------------
Confidence 997621 24677888887411 1 111 13479999998
Q ss_pred HHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHHH-----HHHHHHHhcCCceecCHHHH-HHHHh
Q 002068 822 TIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQLD-----RVQKRIADRKMKMQVTDAAI-QLLGS 891 (973)
Q Consensus 822 ~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l~-----~~~~~~~~~~~~l~~~~~a~-~~L~~ 891 (973)
..+++|+|+. |+|..|.+..-+.+.++.++.+++. .+...+...--...++|+-+ +.|+.
T Consensus 348 ----------~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 348 ----------KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred ----------hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 5678999995 9999999999999999999999984 23344433212356677655 44554
No 302
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.5e-12 Score=131.23 Aligned_cols=145 Identities=26% Similarity=0.398 Sum_probs=105.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCC-Ce
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP-YA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~-~~ 753 (973)
-+|++||||||||+|++++|+.+.- ....++.+++..+. ++.|+.+...+... .+.+.+.+.... --
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-----SKWFsESgKlV~km-F~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-----SKWFSESGKLVAKM-FQKIQELVEDRGNLV 252 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-----HHHHhhhhhHHHHH-HHHHHHHHhCCCcEE
Confidence 3899999999999999999999821 13345666666553 45566554443311 123444444322 23
Q ss_pred EEEEccccccCH---------------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccc
Q 002068 754 VILFDEIEKAHS---------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKET 818 (973)
Q Consensus 754 Vl~lDEid~l~~---------------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~ 818 (973)
.++|||++++.. .+.|+||+-||.=+ ..+|+++++|||.
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl----------------- 306 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNL----------------- 306 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccch-----------------
Confidence 578999997652 38999999998522 4579999999998
Q ss_pred hHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 002068 819 AYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQK 870 (973)
Q Consensus 819 ~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~ 870 (973)
...++-+|.+|-|.+..+.||+...+.+|++.++.++..
T Consensus 307 -------------~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 307 -------------TDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred -------------HHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 334566899999999999999999999999999877653
No 303
>PRK06620 hypothetical protein; Validated
Probab=99.28 E-value=4.2e-11 Score=125.14 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=99.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDE 356 (973)
++++|+||||+|||+|++++++.. +..++. .. .. ... ... ...+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~~----~~----~~-------~~~----~~~--~~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAYIIK----DI----FF-------NEE----ILE--KYNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCEEcc----hh----hh-------chh----HHh--cCCEEEEec
Confidence 457999999999999999988764 322211 00 00 001 111 224899999
Q ss_pred ccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHHH
Q 002068 357 IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRER 433 (973)
Q Consensus 357 i~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~ 433 (973)
||.+. .....+++..+.+.|..++|++++.+.+ +.+ |++++||. .+.+.+|+.+++..+++.....
T Consensus 94 i~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 94 IENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 99652 1346677777778999999999888875 456 89999997 7899999999998888777663
Q ss_pred HhhhcCCccCHHHHHHHHHhcccc
Q 002068 434 YELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 434 ~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
.++.++++++++++..+.+-
T Consensus 163 ----~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 163 ----SSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred ----cCCCCCHHHHHHHHHHccCC
Confidence 57899999999999988643
No 304
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=8.8e-11 Score=129.91 Aligned_cols=223 Identities=18% Similarity=0.222 Sum_probs=140.0
Q ss_pred hcHHHHHhcC-CCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCccc------------
Q 002068 243 KDLTAMASAG-KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------------ 309 (973)
Q Consensus 243 ~~l~~~~~~~-~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l------------ 309 (973)
.+|+++.++. .|+.+|||++..+.++..+......++||.||+|||||++|+.+++.+...++...-
T Consensus 4 ~~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~ 83 (350)
T CHL00081 4 NNLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELM 83 (350)
T ss_pred cchhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhh
Confidence 4556665554 688999999999999988888888899999999999999999999998653321100
Q ss_pred ------------------CCCeEEEEEcccccccccccch--HHHHHHHHHH----HHHHhCCCeEEEEccccccccCCC
Q 002068 310 ------------------MNRKLISLDMGALIAGAKYRGE--FEDRLKAVLK----EVTESEGQIILFIDEIHTVVGAGA 365 (973)
Q Consensus 310 ------------------~~~~~~~l~~~~~~~g~~~~g~--~e~~l~~~~~----~~~~~~~~~ILfiDEi~~l~~~~~ 365 (973)
...+++.+..+.. .....|. .+..+..-.. .......+++|||||++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~t--ed~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~---- 157 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLGAT--EDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD---- 157 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCCCc--hhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC----
Confidence 0011111111000 0011111 1111110000 00011235799999999997
Q ss_pred CCchhhHHHHHhhhhcCC---------------CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCC-HHHHHHHHH
Q 002068 366 TNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPN-VEDTISILR 428 (973)
Q Consensus 366 ~~~~~~~~~~L~~~l~~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~-~~e~~~il~ 428 (973)
...++.|...++.+ ++++|++.|+.+. .+.+++..||. .|.+..|+ .+++.+|++
T Consensus 158 ----~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg----~l~~~LldRf~l~i~l~~~~~~~~e~~il~ 229 (350)
T CHL00081 158 ----DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGMHAEIRTVKDPELRVKIVE 229 (350)
T ss_pred ----HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC----CCCHHHHHHhCceeecCCCCChHHHHHHHH
Confidence 45666777776542 4567777776652 58899999997 68999997 588888886
Q ss_pred HHHH----------HH---------------hhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhh
Q 002068 429 GLRE----------RY---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 429 ~~~~----------~~---------------~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
.... .| +.-.+|.+++..+.++++++...-. .-|...+.++..|-+.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~--~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 230 QRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDV--DGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred hhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC--CCChHHHHHHHHHHHHHHHc
Confidence 5321 00 0113577888888888888764321 24666677777766666554
No 305
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=2.3e-11 Score=134.18 Aligned_cols=168 Identities=20% Similarity=0.365 Sum_probs=111.9
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc--ce--EEeccccccchh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--AL--VRIDMSEYMEKH 722 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~--~~--~~i~~~~~~~~~ 722 (973)
.++.|+||+.+++.+..++...+. ...+||+||+|+||+++|.++|+.+++.+. .. ..+.-....+-+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl--------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~ 73 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRI--------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLL 73 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEE
Confidence 357899999999999999875321 126999999999999999999999976431 00 000000000000
Q ss_pred hhh---hhcCC---------------CCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeE
Q 002068 723 AVS---RLIGA---------------PPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRV 780 (973)
Q Consensus 723 ~~~---~l~G~---------------~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~ 780 (973)
.+. ..-|. ..+.++.+..+.+.+.+. .+.+.|++||++|+++...+|.||+.||+
T Consensus 74 ~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--- 150 (314)
T PRK07399 74 WVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--- 150 (314)
T ss_pred EEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC---
Confidence 000 00011 001111112223344444 34568999999999999999999999997
Q ss_pred ecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHH
Q 002068 781 TDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 781 ~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I 860 (973)
. ++++||++|+. ...+-|.+.+|+ .+|.|++++.+++.++
T Consensus 151 --------P-p~~~fILi~~~------------------------------~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~ 190 (314)
T PRK07399 151 --------P-GNGTLILIAPS------------------------------PESLLPTIVSRC-QIIPFYRLSDEQLEQV 190 (314)
T ss_pred --------C-CCCeEEEEECC------------------------------hHhCcHHHHhhc-eEEecCCCCHHHHHHH
Confidence 2 36778887775 234667899999 8999999999999888
Q ss_pred HHHHH
Q 002068 861 VRLQL 865 (973)
Q Consensus 861 ~~~~l 865 (973)
+....
T Consensus 191 L~~~~ 195 (314)
T PRK07399 191 LKRLG 195 (314)
T ss_pred HHHhh
Confidence 88653
No 306
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.1e-10 Score=128.68 Aligned_cols=209 Identities=20% Similarity=0.268 Sum_probs=147.5
Q ss_pred CCCCchHHHHHHHHHh----ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------
Q 002068 256 PVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------- 324 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l----~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~------- 324 (973)
.+.+|+.+++++...| ....+.|++++||||||||++++.+++++.... .+..++.+||-.+..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHHH
Confidence 3789999999998876 445667899999999999999999999995532 122378888765521
Q ss_pred ------cccccch-HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchH
Q 002068 325 ------GAKYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDE 395 (973)
Q Consensus 325 ------g~~~~g~-~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~ 395 (973)
.....|. ..+-++.+.+.+.......|+++||++.|..... +..--|..+.. ..++.+|+.+|..+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccHH
Confidence 1112222 2233444555555556688999999999996542 22222223322 34678899999887
Q ss_pred HHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHH
Q 002068 396 YRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDE 473 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~ 473 (973)
+.. .+||.+.++|. .|.|++++.+|...|++.-.+.- ...-.+++++++.++..+....++ ..+|++++..
T Consensus 168 ~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~ 240 (366)
T COG1474 168 FLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRR 240 (366)
T ss_pred HHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCcc---HHHHHHHHHH
Confidence 744 46899999985 58899999999999998766531 344568999999988887655432 3489999999
Q ss_pred HHhhhhhh
Q 002068 474 AAAKLKME 481 (973)
Q Consensus 474 a~~~~~~~ 481 (973)
|+..+..+
T Consensus 241 A~eiAe~~ 248 (366)
T COG1474 241 AGEIAERE 248 (366)
T ss_pred HHHHHHhh
Confidence 98877654
No 307
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=2e-11 Score=125.46 Aligned_cols=228 Identities=19% Similarity=0.290 Sum_probs=153.0
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHh---cCCCcceEEeccccccchh
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM---FNTEEALVRIDMSEYMEKH 722 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l---~~~~~~~~~i~~~~~~~~~ 722 (973)
.+++.|.-...+...+.+.+.+...... .++|+.||+|.||+.||+.|.+.- +.-..+|+.+||..+....
T Consensus 181 ~lksgiatrnp~fnrmieqierva~rsr------~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIRSR------APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhhcc------CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch
Confidence 4555666666777777777766543222 259999999999999999998654 1225789999999999999
Q ss_pred hhhhhcCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCC
Q 002068 723 AVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 723 ~~~~l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 801 (973)
.++.++|+..| +.|..+ .-.+.++.+.++.+|+|||..+..+-|..|++.+++.++..-....-..+++.+|+.|-.
T Consensus 255 amsalfghvkgaftga~~--~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvr 332 (531)
T COG4650 255 AMSALFGHVKGAFTGARE--SREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred HHHHHHhhhccccccchh--hhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHH
Confidence 99999999877 555543 345788999999999999999999999999999998765432211111233344443332
Q ss_pred ChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
+.... + ....|+.+|+.||+. .+.+|-+. .++++--+...|.+.. ...|-.
T Consensus 333 dlrq~--------------------v---aeg~fredl~arinlwtf~lpgl~qr~ediepnldyelerha---~~~g~~ 386 (531)
T COG4650 333 DLRQL--------------------V---AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYELERHA---SLTGDS 386 (531)
T ss_pred HHHHH--------------------H---hccchHHHHHHhhheeeeeccccccCccccCCCccHHHHHHH---HhhCce
Confidence 21111 1 145689999999953 33444443 4566555666554433 345667
Q ss_pred eecCHHHHHHHHhc------CCCCCCCccHHHHHHHH
Q 002068 879 MQVTDAAIQLLGSL------GYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 879 l~~~~~a~~~L~~~------~~~~~~gaR~L~r~i~~ 909 (973)
+.+.-++....... .|.+| .|+|.-.+.+
T Consensus 387 vrfntearra~l~fa~spqa~w~gn--frelsasvtr 421 (531)
T COG4650 387 VRFNTEARRAWLAFATSPQATWRGN--FRELSASVTR 421 (531)
T ss_pred eeeehHHHHHHHHhccCcchhhccc--HHHHhHHHHH
Confidence 88888887544443 34555 4777666655
No 308
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.1e-10 Score=128.80 Aligned_cols=195 Identities=16% Similarity=0.170 Sum_probs=127.5
Q ss_pred CCCCCCCchHHHHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCc--------ccCCCeEEEEEccccc
Q 002068 253 KLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--------ALMNRKLISLDMGALI 323 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~--------~l~~~~~~~l~~~~~~ 323 (973)
.|++++|++..++.+...+..+. ++..||+||+|+||+++|.++|+.+.+.+... ....-.++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47889999999999999987765 46679999999999999999999997654211 1111122322221111
Q ss_pred cccc-------ccc--------hHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-CC
Q 002068 324 AGAK-------YRG--------EFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-GE 384 (973)
Q Consensus 324 ~g~~-------~~g--------~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-g~ 384 (973)
.|.. ..| -..+.++++.+.+.. .++..|++||++|.|. ..++|.|+..++. ++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 1110 000 011234555555443 2456799999999997 5578888888873 35
Q ss_pred EEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCc
Q 002068 385 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (973)
Q Consensus 385 i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p 464 (973)
.++|..|+..+ .+-|.+++||+.+.|.+++.++..++|...... .. .+.....++.++. ..|
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~---~~~~~~~l~~~a~------Gs~ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EI---LNINFPELLALAQ------GSP 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----cc---chhHHHHHHHHcC------CCH
Confidence 66777777665 577999999999999999999998888754321 11 1112345566664 346
Q ss_pred hHHHHHHHH
Q 002068 465 DKAIDLVDE 473 (973)
Q Consensus 465 ~~a~~lld~ 473 (973)
.+++++++.
T Consensus 216 ~~al~~l~~ 224 (314)
T PRK07399 216 GAAIANIEQ 224 (314)
T ss_pred HHHHHHHHH
Confidence 677776643
No 309
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.27 E-value=1.2e-10 Score=128.01 Aligned_cols=209 Identities=16% Similarity=0.242 Sum_probs=131.5
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC----CCcceEEecc----ccccch
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDM----SEYMEK 721 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~----~~~~~~~i~~----~~~~~~ 721 (973)
.++|+++++.++...++.+..|.... +. .++|+||||+|||++|++|++.+.. .+.+++.+.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~-r~--il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEER-KQ--ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCC-Cc--EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 89999999999999998887665432 23 4899999999999999999999832 2335555544 111110
Q ss_pred ------------------------------hhhhhh----cCC----------------------CCC---------ccc
Q 002068 722 ------------------------------HAVSRL----IGA----------------------PPG---------YVG 736 (973)
Q Consensus 722 ------------------------------~~~~~l----~G~----------------------~~g---------~~g 736 (973)
+....+ -|. .|+ .+|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 000000 110 011 001
Q ss_pred -----------ccccch--hhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCc-EEeccCEEEEEecCCC
Q 002068 737 -----------YEEGGQ--LTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR-TVSFTNTVIIMTSNVG 802 (973)
Q Consensus 737 -----------~~~~~~--l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~-~v~~~~~iiI~tsN~~ 802 (973)
..+-.. +.+.+.++..||+-|+|+.|++.++++.||.++++|.+....+. .+. -+.+||+|||..
T Consensus 209 ~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~-~d~liia~sNe~ 287 (361)
T smart00763 209 KVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIP-IDGLIIAHSNES 287 (361)
T ss_pred ccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccc-cceEEEEeCCHH
Confidence 000000 11345567779999999999999999999999999999865322 333 356899999971
Q ss_pred hhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC-HHHHHHHHHHHHHHHHHHHHhcCCceec
Q 002068 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQLDRVQKRIADRKMKMQV 881 (973)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~-~~~l~~I~~~~l~~~~~~~~~~~~~l~~ 881 (973)
. +.. ........+|++||. +|.++.+. .++=.+|.++.+.. ......++
T Consensus 288 e--~~~---------------------~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~------s~~~~~~~ 337 (361)
T smart00763 288 E--WQR---------------------FKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRN------SDLTEAHI 337 (361)
T ss_pred H--Hhh---------------------hhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhcc------CcCccccc
Confidence 1 000 001123568999995 77776544 55556777776642 11124677
Q ss_pred CHHHHHHHHhc
Q 002068 882 TDAAIQLLGSL 892 (973)
Q Consensus 882 ~~~a~~~L~~~ 892 (973)
.|.+++.++..
T Consensus 338 aP~~le~aa~~ 348 (361)
T smart00763 338 APHTLEMAALF 348 (361)
T ss_pred CchHHHHHHHH
Confidence 88887776663
No 310
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.26 E-value=1.1e-10 Score=120.07 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=107.1
Q ss_pred HHHhccCCC-CCceEECCCCCcHHHHHHHHHHHHhcCCCCccc---------------CCCeEEEEEcccccccccccch
Q 002068 268 IQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL---------------MNRKLISLDMGALIAGAKYRGE 331 (973)
Q Consensus 268 i~~l~~~~~-~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l---------------~~~~~~~l~~~~~~~g~~~~g~ 331 (973)
.+.+..+.. +.+||+||+|+|||++|+.+++.+.+.. +... ....+..++...- . .
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-----~--~ 76 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-----S--I 76 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-----c--C
Confidence 344434444 4589999999999999999999986531 0000 0111222221110 0 1
Q ss_pred HHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhhhccCHHH
Q 002068 332 FEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPAL 406 (973)
Q Consensus 332 ~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~~~~d~al 406 (973)
..+.++.+++.+.. .++..|++|||+|.+. .+.++.|+..++.. ...+|++|+... .+.+++
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~--------~~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~i 143 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMN--------EAAANALLKTLEEPPPNTLFILITPSPE-----KLLPTI 143 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----hChHHH
Confidence 12345556666554 2456799999999997 44677788888753 467777776552 578999
Q ss_pred HccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 407 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 407 ~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
++|++.+.|.+|+.++..++++.. + ++++++..++..+.+.
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGS 184 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCC
Confidence 999999999999999987777543 3 6888999998888743
No 311
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=1.4e-10 Score=134.06 Aligned_cols=214 Identities=20% Similarity=0.297 Sum_probs=131.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~ 724 (973)
....++|.+..++.|...+.....+. +|. +++++||||||||++++.+.+.+... ...+++++|.........
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~----~~~-~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGS----RPL-NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCC----CCC-eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 34678999999999988887654332 222 69999999999999999999887432 356889999876543221
Q ss_pred -----hhhcCCCCCccccccc---chhhHHHHh-CCCeEEEEccccccC----HHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 725 -----SRLIGAPPGYVGYEEG---GQLTEVVRR-RPYAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 725 -----~~l~G~~~g~~g~~~~---~~l~~~~~~-~~~~Vl~lDEid~l~----~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
..+.+.+....+.... ..+.+.+.. ..+.||+|||+|.+. .+.+..|+..++.- .-.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~ 172 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGA 172 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCC
Confidence 2233322222221111 122233332 345799999999986 45666666665531 112
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQLDRVQK 870 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~~~l~~I~~~~l~~~~~ 870 (973)
++.+|+++|... +...+.|.+.+|+. ..|.|+|++.+++.+|+...+..
T Consensus 173 ~v~vI~i~~~~~---------------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--- 222 (394)
T PRK00411 173 RIGVIGISSDLT---------------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--- 222 (394)
T ss_pred eEEEEEEECCcc---------------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---
Confidence 566888887511 01124445555553 47899999999999999877632
Q ss_pred HHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 871 RIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 871 ~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+. .-.+++++++++++........+|.....+..
T Consensus 223 ~~~----~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 223 GFY----PGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred hcc----cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 111 12478999999987532212234444444433
No 312
>PRK09087 hypothetical protein; Validated
Probab=99.26 E-value=9.4e-11 Score=123.57 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=112.9
Q ss_pred CCCCCCC--chHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccc
Q 002068 253 KLDPVIG--RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (973)
Q Consensus 253 ~l~~iiG--~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g 330 (973)
+|+++|. .+...-.+++.+.....+.++|+||+|+|||+|+++++... +..++ +...+
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~~i--~~~~~-------- 78 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DALLI--HPNEI-------- 78 (226)
T ss_pred ChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCEEe--cHHHc--------
Confidence 4666663 34444444444332222337999999999999999988764 33333 22211
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccC
Q 002068 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 410 (973)
Q Consensus 331 ~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf 410 (973)
...++..+. ..+|+|||+|.+... .....+++....+.|..++|++++.+.+-. ...+.+++||
T Consensus 79 -----~~~~~~~~~----~~~l~iDDi~~~~~~-----~~~lf~l~n~~~~~g~~ilits~~~p~~~~--~~~~dL~SRl 142 (226)
T PRK09087 79 -----GSDAANAAA----EGPVLIEDIDAGGFD-----ETGLFHLINSVRQAGTSLLMTSRLWPSSWN--VKLPDLKSRL 142 (226)
T ss_pred -----chHHHHhhh----cCeEEEECCCCCCCC-----HHHHHHHHHHHHhCCCeEEEECCCChHHhc--cccccHHHHH
Confidence 111222221 137889999976321 245677777778888888888888776522 1368999999
Q ss_pred ---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 411 ---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 411 ---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
..+.+..|+.+++.++++..++. .++.++++++.++++.+.|
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhh
Confidence 57899999999999999888874 5789999999999988864
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.25 E-value=4.2e-10 Score=127.73 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=117.2
Q ss_pred CCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchH-HHH
Q 002068 257 VIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF-EDR 335 (973)
Q Consensus 257 iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~-e~~ 335 (973)
++|+++.|+.+...+.. ..|+||+||||||||++|++|++.+.... ++..+.+.-. ......|.. -..
T Consensus 22 i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~--------~F~~~~~~ft-tp~DLfG~l~i~~ 90 (498)
T PRK13531 22 LYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNAR--------AFEYLMTRFS-TPEEVFGPLSIQA 90 (498)
T ss_pred ccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccC--------cceeeeeeec-CcHHhcCcHHHhh
Confidence 89999999999998754 45999999999999999999999873221 2222221100 000111111 000
Q ss_pred H--HHHHHHHHHh--CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------CEEE-EEccCchHHHhh
Q 002068 336 L--KAVLKEVTES--EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------ELRC-IGATTLDEYRKY 399 (973)
Q Consensus 336 l--~~~~~~~~~~--~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------~i~i-I~at~~~~~~~~ 399 (973)
. ..-|...... ...-+||+|||+.+. ...++.|+.+++.+ ..++ ++|||+-+- -
T Consensus 91 ~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE--~ 160 (498)
T PRK13531 91 LKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE--A 160 (498)
T ss_pred hhhcCchhhhcCCccccccEEeecccccCC--------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc--c
Confidence 0 0011111100 011289999999876 55788888888533 2233 444453220 0
Q ss_pred hccCHHHHccCc-eEEecCCC-HHHHHHHHHHHHHH-------------------HhhhcCCccCHHHHHHHHHhcccc-
Q 002068 400 IEKDPALERRFQ-QVYVDQPN-VEDTISILRGLRER-------------------YELHHGVRISDSALVEAAILSDRY- 457 (973)
Q Consensus 400 ~~~d~al~~Rf~-~i~~~~p~-~~e~~~il~~~~~~-------------------~~~~~~v~i~~~~l~~l~~~s~~~- 457 (973)
-...+++..||. .|.+++|+ .++-.+||...... ...-..|.+++..++++..+....
T Consensus 161 g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr 240 (498)
T PRK13531 161 DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLD 240 (498)
T ss_pred CCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHh
Confidence 012358999996 67888886 45557777532110 001135778888888887775411
Q ss_pred -cC--CCCCchHHHHHHHHHHhhhhh--hccCCchhHH
Q 002068 458 -IS--GRFLPDKAIDLVDEAAAKLKM--EITSKPTALD 490 (973)
Q Consensus 458 -i~--~r~~p~~a~~lld~a~~~~~~--~~~~~~~~~~ 490 (973)
.. ....|...+.++..+-+.+-+ +..-.|.++.
T Consensus 241 ~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 241 ALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred cCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 11 113445556655555444433 3334444443
No 314
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.25 E-value=2.1e-10 Score=132.67 Aligned_cols=186 Identities=17% Similarity=0.300 Sum_probs=117.7
Q ss_pred CCCC-CCCchHH-HHHHHH-HhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc
Q 002068 253 KLDP-VIGRDDE-IRRCIQ-ILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 253 ~l~~-iiG~~~~-i~~li~-~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+|+. ++|.+.. ...+.. ..... ..++++|+||||+|||+|++++++++.... .+..++.+++..+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~-- 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND-- 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH--
Confidence 5677 4575543 222222 22222 124568999999999999999999985431 1567888876654321
Q ss_pred ccchHH-HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHH
Q 002068 328 YRGEFE-DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 406 (973)
Q Consensus 328 ~~g~~e-~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al 406 (973)
+..... ..+..+.+.+.. .-+|+|||+|.+.+.. .......+++....+.+...+|+++..+.- .-.+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~~--l~~l~~~l 253 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRS---VDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPKE--LPGLEERL 253 (405)
T ss_pred HHHHHHcCCHHHHHHHHHh---CCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHHH--Hhhhhhhh
Confidence 111110 011122222322 3499999999986432 112335556666666666555555444332 12367899
Q ss_pred HccCc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 407 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 407 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
.+||. .+.|..|+.+++..|++..+.. .++.++++++.+++....+
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 99995 5899999999999999988874 5788999999999877653
No 315
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=9.5e-11 Score=130.63 Aligned_cols=158 Identities=18% Similarity=0.314 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+++|+||+.+++.+...+...+ ....+||+||+|+|||++|+.+++.+.+....-...|+..+
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~--------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~--------- 65 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNR--------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF--------- 65 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCC--------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe---------
Confidence 4679999999999988875321 11257999999999999999999998653211001111111
Q ss_pred cCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh
Q 002068 728 IGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (973)
Q Consensus 728 ~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 803 (973)
........+.+....+.+.+. ...+.|++||++|+++.+.+|.|+..||+ ...+++||++|+.
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~-- 132 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCEN-- 132 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCC--
Confidence 000001111111122222222 23457999999999999999999999997 3457788887764
Q ss_pred hhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...+.|.+.+|+ .++.|.+++.+++...+...
T Consensus 133 ----------------------------~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 133 ----------------------------LEQILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred ----------------------------hHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 223667899999 79999999999998777654
No 316
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=2.7e-10 Score=131.92 Aligned_cols=187 Identities=16% Similarity=0.245 Sum_probs=118.4
Q ss_pred CCCCCC-CchH--HHHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccc
Q 002068 253 KLDPVI-GRDD--EIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 328 (973)
Q Consensus 253 ~l~~ii-G~~~--~i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~ 328 (973)
+|+.+| |... ....+.++..... .++++||||||+|||+|++++++.+.... .+..++.++...+....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~-- 175 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDL-- 175 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH--
Confidence 567665 6443 2333333333222 35678999999999999999999985432 15678888766543211
Q ss_pred cchH-HHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHH
Q 002068 329 RGEF-EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 329 ~g~~-e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~ 407 (973)
.... ...+..+..... ...-+|+|||++.+.+... .......++....+.+...+|++...+..-. .+++.+.
T Consensus 176 ~~~~~~~~~~~f~~~~~--~~~dvLlIDDi~~l~~~~~--~q~elf~~~n~l~~~~k~iIitsd~~p~~l~--~l~~rL~ 249 (440)
T PRK14088 176 VDSMKEGKLNEFREKYR--KKVDVLLIDDVQFLIGKTG--VQTELFHTFNELHDSGKQIVICSDREPQKLS--EFQDRLV 249 (440)
T ss_pred HHHHhcccHHHHHHHHH--hcCCEEEEechhhhcCcHH--HHHHHHHHHHHHHHcCCeEEEECCCCHHHHH--HHHHHHh
Confidence 0000 001112222222 1245999999998864321 1133555666666777655555544443222 3568999
Q ss_pred ccCc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 408 RRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 408 ~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
+||. .+.|.+|+.+.+.+|++..+.. .++.++++++.+++..+.+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDD 297 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhcccc
Confidence 9996 6899999999999999887763 5788999999999988764
No 317
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.2e-11 Score=130.75 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=106.9
Q ss_pred cCCCCCCCCchHHHHHHHH----Hhc---------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQ----ILS---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~----~l~---------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
|.+|+.++-..+.-+++++ .+. +.-+++.|||||||||||+++.++|..| +..++-+
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydL 266 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDL 266 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEe
Confidence 4566666665544444443 332 2335788999999999999999999999 9999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC-----chh-----hHHHHHhhhhc----C-
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-----GAM-----DAGNLLKPMLG----R- 382 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~-----~~~-----~~~~~L~~~l~----~- 382 (973)
++++..... .++.++... .+.+||+|.+||.-+...... +.. -...=|+..++ .
T Consensus 267 eLt~v~~n~--------dLr~LL~~t---~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc 335 (457)
T KOG0743|consen 267 ELTEVKLDS--------DLRHLLLAT---PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC 335 (457)
T ss_pred eeccccCcH--------HHHHHHHhC---CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC
Confidence 987764321 277776654 456799999999986422111 101 11111333332 2
Q ss_pred -CCEEEEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHH
Q 002068 383 -GELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 383 -g~i~iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~ 432 (973)
+.-++|+|||+.+ .+||||.| |++ .|++..-+.+....+..+++.
T Consensus 336 g~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 336 GDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred CCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 2567889999998 79999999 998 799999999886666555543
No 318
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=3.8e-11 Score=135.18 Aligned_cols=182 Identities=19% Similarity=0.329 Sum_probs=124.2
Q ss_pred cCCCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-----
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----- 323 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~----- 323 (973)
..+|+++||....+.++++...+ +...++|++|++||||..+|+++.+.-.. ++.+|+.+||+++-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R-------~~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR-------ANGPFIAINCAAIPETLLE 313 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc-------cCCCeEEEecccCCHHHHH
Confidence 35799999999999999998765 45678999999999999999999987532 37899999998771
Q ss_pred ---cccc---ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------C
Q 002068 324 ---AGAK---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (973)
Q Consensus 324 ---~g~~---~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~ 384 (973)
.|+. |.|...+--..+|+.| .++-||+|||..|. ...+.-|+++|..+ +
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A----~gGTLFLDEIgemp--------l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELA----NGGTLFLDEIGEMP--------LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeec----cCCeEEehhhccCC--------HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 2211 2222211111244433 35689999999997 66788888888633 7
Q ss_pred EEEEEccCchHHHhhhccCHHHHc----cCceEEecCCCHHHHH----HHHHHHHHHHhhhcC--Cc-cCHHHHHHHHHh
Q 002068 385 LRCIGATTLDEYRKYIEKDPALER----RFQQVYVDQPNVEDTI----SILRGLRERYELHHG--VR-ISDSALVEAAIL 453 (973)
Q Consensus 385 i~iI~at~~~~~~~~~~~d~al~~----Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~--v~-i~~~~l~~l~~~ 453 (973)
|++|+|||.+.-. .+ -+..|+. |+..+.+..|+..+|. .+...++.++...++ +. ++++++..+.++
T Consensus 382 VRIIAATN~nL~~-~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 382 VRIIAATNRNLEK-MI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEeccCcCHHH-HH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 8999999987532 22 1233333 8887778887765554 444666666554443 33 677777665544
No 319
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.24 E-value=7.2e-11 Score=136.46 Aligned_cols=173 Identities=14% Similarity=0.292 Sum_probs=117.8
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
.+++|+||+|+|||+|++++++.+... +..++++++.++...... .+ ... ....+.+.++. ..+|+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~-~~-~~~-------~~~~~~~~~~~--~dlLii 205 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVN-AL-RNN-------KMEEFKEKYRS--VDLLLI 205 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHH-HH-HcC-------CHHHHHHHHHh--CCEEEE
Confidence 368999999999999999999988543 466888888776443111 11 100 01123334443 359999
Q ss_pred ccccccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhcc
Q 002068 758 DEIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIF 835 (973)
Q Consensus 758 DEid~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 835 (973)
|||+.+.. ..+..|+.+++.-. -.+..+|+|+|..+..+ ..+
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~----------~~~~~iiits~~~p~~l--------------------------~~l 249 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALH----------ENGKQIVLTSDRPPKEL--------------------------PGL 249 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH----------HCCCCEEEecCCCHHHH--------------------------hhh
Confidence 99998753 46677777776311 01234677887643322 124
Q ss_pred Chhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 836 RPEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 836 ~p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.+.+.+||. .++.|++++.+++..|++..+.. . .+.++++++++|++. +..+ .|.|..++.++.
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-------~--~~~l~~e~l~~ia~~-~~~~--~r~l~~~l~~l~ 315 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-------E--GLELPDEVLEFIAKN-IRSN--VRELEGALNRLL 315 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHH
Confidence 567888885 48999999999999999987754 2 477899999999984 5444 688888877754
No 320
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.24 E-value=1.5e-10 Score=119.19 Aligned_cols=156 Identities=22% Similarity=0.344 Sum_probs=100.0
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCC----cce-EEeccccccch-hhhhhhcCCCCCcccccccchhhHHHHh----
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTE----EAL-VRIDMSEYMEK-HAVSRLIGAPPGYVGYEEGGQLTEVVRR---- 749 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~----~~~-~~i~~~~~~~~-~~~~~l~G~~~g~~g~~~~~~l~~~~~~---- 749 (973)
..+||+||+|+|||++|+.+++.+.+.. .+. ...+|..+... +.....+....+..+.+....+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 3699999999999999999999996531 111 00011111000 0000000000011111111222333332
Q ss_pred CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHH
Q 002068 750 RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMD 829 (973)
Q Consensus 750 ~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 829 (973)
....|++|||+|++.++.++.|+..|++ ...+++||+++|.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~---------------------------- 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPS---------------------------- 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECC----------------------------
Confidence 4457999999999999999999999987 2346778888775
Q ss_pred HHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 830 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 830 ~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
...+.+++.+|+ .++.|.|++.+++.+++... | ++++++++|+..
T Consensus 136 --~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 136 --PEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred --hHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 123566788999 68999999999998877653 3 678999998885
No 321
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=7.3e-11 Score=130.79 Aligned_cols=214 Identities=19% Similarity=0.225 Sum_probs=130.3
Q ss_pred CCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCC----CCccc---------CCCeEE-----
Q 002068 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD----VPQAL---------MNRKLI----- 315 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~----~p~~l---------~~~~~~----- 315 (973)
|..+||+++.+..++-.+-.....+++|.|+||+||||++++++..+.... .|... .+++..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 677999999999988777666678999999999999999999998873211 00000 000100
Q ss_pred ----------EEEcccccccccccchH--HHHHHH---HH-HHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhh
Q 002068 316 ----------SLDMGALIAGAKYRGEF--EDRLKA---VL-KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (973)
Q Consensus 316 ----------~l~~~~~~~g~~~~g~~--e~~l~~---~~-~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (973)
..++..-.......|.. +..++. .+ ..+.....+++|||||++.+. ...++.|..+
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~--------~~~Q~~Ll~~ 154 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE--------DHLVDVLLDV 154 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC--------HHHHHHHHHH
Confidence 01111100111122211 111100 00 001111235699999999986 4577777777
Q ss_pred hcCC---------------CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCH-HHHHHHHHHHHHH---------
Q 002068 380 LGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRER--------- 433 (973)
Q Consensus 380 l~~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~-~e~~~il~~~~~~--------- 433 (973)
++.+ ++.+|+++|..+. .+.+++.+||. .+.++.|+. +++.+|++.....
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~np~eg----~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~ 230 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCE 230 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEeccccccC----CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhh
Confidence 7654 3577777776642 58899999998 688888865 8888888652110
Q ss_pred -H---------------hhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhh
Q 002068 434 -Y---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 434 -~---------------~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
+ +.-.++.++++.+.+++.++...-. .-|...+.++..|.+.+.+.
T Consensus 231 ~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~--~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 231 KWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV--DGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred hhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHHHHc
Confidence 1 0113567888888888887754321 13456677777776666554
No 322
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.4e-10 Score=129.71 Aligned_cols=182 Identities=18% Similarity=0.199 Sum_probs=122.7
Q ss_pred CCCCCC-chHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCccc--------------CCCeEEEE
Q 002068 254 LDPVIG-RDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQAL--------------MNRKLISL 317 (973)
Q Consensus 254 l~~iiG-~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~l--------------~~~~~~~l 317 (973)
++.++| ++..++.+...+..+..+|. ||+||+|+|||++|+.+++.+.+.+..... ....+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 456788 87888888888877776676 899999999999999999998664311100 01112222
Q ss_pred EcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccC
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATT 392 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~ 392 (973)
... |.. -..+.++.+.+.+.. .++.-|++|||+|.+. .+++|.|+..+|+ +.+.+|.+|+
T Consensus 84 ~~~----~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 84 APD----GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccc----ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEeC
Confidence 111 110 112345666665542 2345699999999997 5688999999985 5788888877
Q ss_pred chHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
... .+-|++++||+.+.|.+|+.++....|.. .+ ++++....++.++. -|.+|.++++
T Consensus 149 ~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~~--------~g--i~~~~~~~l~~~~g-------~~~~A~~l~~ 206 (329)
T PRK08058 149 NKH-----QILPTILSRCQVVEFRPLPPESLIQRLQE--------EG--ISESLATLLAGLTN-------SVEEALALSE 206 (329)
T ss_pred ChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHHH--------cC--CChHHHHHHHHHcC-------CHHHHHHHhc
Confidence 654 57799999999999999999987665531 23 45554444444431 2566766654
No 323
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=129.86 Aligned_cols=216 Identities=19% Similarity=0.285 Sum_probs=139.7
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC-Ccc-eEEeccccccchhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-EEA-LVRIDMSEYMEKHAV 724 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~-~~~i~~~~~~~~~~~ 724 (973)
+.+.+.+.+..++++...+.....|.. |. +++++||||||||.+++.+.+.+... ... ++++||-.+.....+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~----p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGER----PS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCC----Cc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 345588888899999888876655433 32 69999999999999999999999543 222 799999999777544
Q ss_pred h----hhcCCCCCcccccc---cchhhHHHHh-CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 725 S----RLIGAPPGYVGYEE---GGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 725 ~----~l~G~~~g~~g~~~---~~~l~~~~~~-~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
. .-+|..| ..|... ...+.+.+.. ...-||+|||+|.+...-.+.|++++....-. ..++.+|
T Consensus 90 ~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi 160 (366)
T COG1474 90 LSKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSII 160 (366)
T ss_pred HHHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEE
Confidence 2 2233222 222221 1233444443 44569999999999766446666666532211 2456788
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRK 876 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~ 876 (973)
+.+|. ..+...+...+++.|.| ..|.|+||+.+++..|+....+.. +
T Consensus 161 ~i~n~-------------------~~~~~~ld~rv~s~l~~-------~~I~F~pY~a~el~~Il~~R~~~~---~---- 207 (366)
T COG1474 161 AVSND-------------------DKFLDYLDPRVKSSLGP-------SEIVFPPYTAEELYDILRERVEEG---F---- 207 (366)
T ss_pred EEecc-------------------HHHHHHhhhhhhhccCc-------ceeeeCCCCHHHHHHHHHHHHHhh---c----
Confidence 88887 11234444455555555 359999999999999999877541 1
Q ss_pred CceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 877 MKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 877 ~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
..-.++++++++++.........||---..++.
T Consensus 208 ~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 208 SAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred cCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 124588999998887533222245544444443
No 324
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.23 E-value=5.8e-11 Score=130.36 Aligned_cols=208 Identities=20% Similarity=0.289 Sum_probs=133.9
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh-
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV- 724 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~- 724 (973)
.++..++||+.....|..... +-.++.+|+.|+.|||||+++|+|+..|- .--+.++|.--.++...
T Consensus 14 ~pf~aivGqd~lk~aL~l~av---------~P~iggvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV---------DPQIGGALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc---------ccccceeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCCCCChh
Confidence 567889999988777643311 12256899999999999999999999992 11222233100000000
Q ss_pred ----------------------hhhcCCCCC-----cccccc-------c--chhhHHHHhCCCeEEEEccccccCHHHH
Q 002068 725 ----------------------SRLIGAPPG-----YVGYEE-------G--GQLTEVVRRRPYAVILFDEIEKAHSDVF 768 (973)
Q Consensus 725 ----------------------~~l~G~~~g-----~~g~~~-------~--~~l~~~~~~~~~~Vl~lDEid~l~~~v~ 768 (973)
..+++.|-+ .+|.-+ + ..-.+.+.+++.+||++||+..++..++
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 012222222 111100 0 0113456678889999999999999999
Q ss_pred HHHHHhhcCCeE-ecCCCcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceE
Q 002068 769 NVFLQILDDGRV-TDSQGRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY 846 (973)
Q Consensus 769 ~~Ll~~le~g~~-~~~~g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~ 846 (973)
+.||++++.|.- .--.|..+.++ ++++|+|+|+. ...++|.|++||...
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-----------------------------eGeLrpqLlDRfg~~ 212 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-----------------------------EGELRPQLLDRFGLE 212 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-----------------------------ccccchhhHhhhcce
Confidence 999999999943 33448888887 99999999992 234789999999988
Q ss_pred EEcCCCC-HHHHHHHHHHHHH----------HHH---HHHH-----hc-C-CceecCHHHHHHHHhcCC
Q 002068 847 IVFQPLD-RDQISSIVRLQLD----------RVQ---KRIA-----DR-K-MKMQVTDAAIQLLGSLGY 894 (973)
Q Consensus 847 i~f~~l~-~~~l~~I~~~~l~----------~~~---~~~~-----~~-~-~~l~~~~~a~~~L~~~~~ 894 (973)
|...+++ .++..+|+.+.+. .+. ..++ .+ + ..+.+++++..+++..+.
T Consensus 213 v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~ 281 (423)
T COG1239 213 VDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCA 281 (423)
T ss_pred eeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHH
Confidence 8776654 6666667665443 111 1111 11 1 257888888888887644
No 325
>PRK04132 replication factor C small subunit; Provisional
Probab=99.23 E-value=1.1e-10 Score=141.65 Aligned_cols=163 Identities=18% Similarity=0.262 Sum_probs=129.2
Q ss_pred CceEEC--CCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhC-----CCe
Q 002068 278 NPVLIG--EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESE-----GQI 350 (973)
Q Consensus 278 ~~LL~G--ppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~-----~~~ 350 (973)
+-+..| |.+.||||+|++||+.+...+ .+..++++|.++..+ ...++.+++.+.... +..
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCE
Confidence 446778 999999999999999984322 256799999876421 124556665544221 236
Q ss_pred EEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHH
Q 002068 351 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 428 (973)
Q Consensus 351 ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~ 428 (973)
|+||||+|.|. .++++.|++.++. +.+++|++||... .+.+++++||+.+.|.+|+.++....|+
T Consensus 633 VvIIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 633 IIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 99999999997 5688999999994 7899999999876 6789999999999999999999999998
Q ss_pred HHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHh
Q 002068 429 GLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (973)
Q Consensus 429 ~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~ 476 (973)
.++++ +++.++++++..++..|.+- +.+|+.+++.++.
T Consensus 700 ~I~~~----Egi~i~~e~L~~Ia~~s~GD------lR~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAEN----EGLELTEEGLQAILYIAEGD------MRRAINILQAAAA 737 (846)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 88874 57889999999999999743 3478888887654
No 326
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.23 E-value=3.1e-11 Score=120.56 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=90.6
Q ss_pred cchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcce-EEecccccc---ch-hhhhhh
Q 002068 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL-VRIDMSEYM---EK-HAVSRL 727 (973)
Q Consensus 653 Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~-~~i~~~~~~---~~-~~~~~l 727 (973)
||+.+++.|.+.+...+ -...+||+||+|+||+++|..+++.+++....- ..-.|.... .. +..-..
T Consensus 1 gq~~~~~~L~~~~~~~~--------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR--------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCC--------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 78888898888876322 112589999999999999999999997643221 111111110 00 000011
Q ss_pred cCCCCC--cccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCC
Q 002068 728 IGAPPG--YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 728 ~G~~~g--~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 801 (973)
+..... ..+.++...+.+.+. ..++.|++|||+|++..+.+|.||..||+ ...+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 111111 122222222223332 24567999999999999999999999998 4468899998886
Q ss_pred ChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC
Q 002068 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (973)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~ 853 (973)
...+.|.+++|+ ..|.|+|++
T Consensus 142 ------------------------------~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 ------------------------------PSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp ------------------------------GGGS-HHHHTTS-EEEEE----
T ss_pred ------------------------------hHHChHHHHhhc-eEEecCCCC
Confidence 445778899999 889999875
No 327
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=3.2e-11 Score=135.65 Aligned_cols=164 Identities=20% Similarity=0.383 Sum_probs=108.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc-c---eE----Eec-cccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A---LV----RID-MSEY 718 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~-~---~~----~i~-~~~~ 718 (973)
+.+|+||+.+++.+.+++...+. ...+||+||+|+||+++|..+|+.+++... . +. .+. |...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl--------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRL--------HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC
Confidence 36799999999999988875321 125999999999999999999999976331 0 00 000 1111
Q ss_pred cchhhhhhhc--CCCCCc-----------------ccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhh
Q 002068 719 MEKHAVSRLI--GAPPGY-----------------VGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQIL 775 (973)
Q Consensus 719 ~~~~~~~~l~--G~~~g~-----------------~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~l 775 (973)
...+.+ |..|.+ ++.++...+...+. ...+.|++|||+|.+++..+|.|+..+
T Consensus 90 ----~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 90 ----PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred ----hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 011111 111111 11111112222222 244579999999999999999999999
Q ss_pred cCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHH
Q 002068 776 DDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 855 (973)
Q Consensus 776 e~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~ 855 (973)
++ ...+++||++|+.. ..+.|.+.+|| ..|.|+|++.+
T Consensus 166 Ee-----------pp~~~~~IL~t~~~------------------------------~~llpti~SRc-~~i~l~~l~~~ 203 (365)
T PRK07471 166 EE-----------PPARSLFLLVSHAP------------------------------ARLLPTIRSRC-RKLRLRPLAPE 203 (365)
T ss_pred hc-----------CCCCeEEEEEECCc------------------------------hhchHHhhccc-eEEECCCCCHH
Confidence 97 23467788877761 12456788999 78999999999
Q ss_pred HHHHHHHHHH
Q 002068 856 QISSIVRLQL 865 (973)
Q Consensus 856 ~l~~I~~~~l 865 (973)
++.+++....
T Consensus 204 ~i~~~L~~~~ 213 (365)
T PRK07471 204 DVIDALAAAG 213 (365)
T ss_pred HHHHHHHHhc
Confidence 9998887643
No 328
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2e-10 Score=120.18 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=117.0
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccch-HHHHHHHHHHHHHH---hCCCe
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE-FEDRLKAVLKEVTE---SEGQI 350 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~-~e~~l~~~~~~~~~---~~~~~ 350 (973)
.+.|+||+||+|+|||.||+.||+.+ +.+|.--|+..+.. ..|+|+ +|.-+.+++..+.. ....+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 46799999999999999999999999 88888888888764 348886 45555556544321 23467
Q ss_pred EEEEccccccccCCCCC------chhhHHHHHhhhhcC-----------------------CCEEEEEccCchHHHh---
Q 002068 351 ILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGR-----------------------GELRCIGATTLDEYRK--- 398 (973)
Q Consensus 351 ILfiDEi~~l~~~~~~~------~~~~~~~~L~~~l~~-----------------------g~i~iI~at~~~~~~~--- 398 (973)
|+||||||.+....... ...-++..|+.+++- .+|.+|+........+
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 99999999998544221 223456677777741 1555555433221111
Q ss_pred ------------------------------------hhccCHHHHccCce-EEecCCCHHHHHHHH----HHHHHHHhhh
Q 002068 399 ------------------------------------YIEKDPALERRFQQ-VYVDQPNVEDTISIL----RGLRERYELH 437 (973)
Q Consensus 399 ------------------------------------~~~~d~al~~Rf~~-i~~~~p~~~e~~~il----~~~~~~~~~~ 437 (973)
.|.+-|.|.-|+.. ..+...+.+...+|| ..+.++|..-
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 13355888889974 478888999999999 4566666532
Q ss_pred c-----CCccCHHHHHHHHHhcc
Q 002068 438 H-----GVRISDSALVEAAILSD 455 (973)
Q Consensus 438 ~-----~v~i~~~~l~~l~~~s~ 455 (973)
. .+.++++++.++++.+-
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A~ 347 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKAI 347 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHHH
Confidence 2 34689999988887663
No 329
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.22 E-value=8.2e-11 Score=123.57 Aligned_cols=172 Identities=17% Similarity=0.332 Sum_probs=113.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC--CCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 758 (973)
+++++||+|+|||+|.+++++.+.. .+..++++++.++....... +.. .....+.+.++. ..+|+||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~-~~~--------~~~~~~~~~~~~--~DlL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA-LRD--------GEIEEFKDRLRS--ADLLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH-HHT--------TSHHHHHHHHCT--SSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH-HHc--------ccchhhhhhhhc--CCEEEEe
Confidence 6899999999999999999988743 35678899888876542111 000 001123334443 3599999
Q ss_pred cccccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccC
Q 002068 759 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (973)
Q Consensus 759 Eid~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 836 (973)
+++.+.. ..+..|+.+++.-. -.+..+|+|++..+..+. .+.
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~l~--------------------------~~~ 148 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSELS--------------------------GLL 148 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTTTT--------------------------TS-
T ss_pred cchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCcccc--------------------------ccC
Confidence 9999874 45888888886411 123357888876543332 267
Q ss_pred hhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 837 PEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 837 p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
|.|.+|+. .++.+.+|+.++..+|++..... . .+.++++++++|++. ++.+ .|.|...+.++.
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~-------~--~~~l~~~v~~~l~~~-~~~~--~r~L~~~l~~l~ 213 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE-------R--GIELPEEVIEYLARR-FRRD--VRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH-------T--T--S-HHHHHHHHHH-TTSS--HHHHHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH-------h--CCCCcHHHHHHHHHh-hcCC--HHHHHHHHHHHH
Confidence 78889984 48999999999999999987753 4 366999999999995 4443 788888888754
No 330
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=1.9e-10 Score=132.89 Aligned_cols=173 Identities=16% Similarity=0.331 Sum_probs=118.4
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcc
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 759 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 759 (973)
.+++|+||+|+|||+|++++++.+...+..++++++..+.... ... +.. + ....+....+ ...||+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~-l~~-----~--~~~~f~~~~~--~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSA-IRS-----G--EMQRFRQFYR--NVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHH-Hhc-----c--hHHHHHHHcc--cCCEEEEcc
Confidence 3699999999999999999999986556778888877664321 111 110 0 0011222222 345999999
Q ss_pred ccccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccCh
Q 002068 760 IEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 837 (973)
Q Consensus 760 id~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p 837 (973)
|+.+. ...+..|+.+++.-. + .+..+|+|||..+..+ ..+.+
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~--~--------~~k~IIlts~~~p~~l--------------------------~~l~~ 254 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLH--T--------EGKLIVISSTCAPQDL--------------------------KAMEE 254 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHH--H--------CCCcEEEecCCCHHHH--------------------------hhhHH
Confidence 99985 356777777765311 0 1235778887643222 12566
Q ss_pred hhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 838 EFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 838 ~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.+.+||. .++.+.|++.+++..|++..+.. . .+.++++++++|+.. ++. +.|.|...+.+++
T Consensus 255 rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~-------~--~~~l~~evl~~la~~-~~~--dir~L~g~l~~l~ 318 (445)
T PRK12422 255 RLISRFEWGIAIPLHPLTKEGLRSFLERKAEA-------L--SIRIEETALDFLIEA-LSS--NVKSLLHALTLLA 318 (445)
T ss_pred HHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-cCC--CHHHHHHHHHHHH
Confidence 7888984 69999999999999999887743 3 378999999999994 444 4799998888864
No 331
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=5.9e-10 Score=129.22 Aligned_cols=189 Identities=11% Similarity=0.128 Sum_probs=117.2
Q ss_pred CCCCCCC-CchH--HHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 252 GKLDPVI-GRDD--EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 252 ~~l~~ii-G~~~--~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
.+|+.++ |... ....+..+.... ..++++|+|++|+|||+|++++++.+.... .+..++.+++..+...
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~- 185 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARK- 185 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH-
Confidence 4677765 5433 233333332221 224567999999999999999999874432 2567888876655421
Q ss_pred cccchHH---HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccC
Q 002068 327 KYRGEFE---DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKD 403 (973)
Q Consensus 327 ~~~g~~e---~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d 403 (973)
+...+. +.+..+...+ ...-+|+|||++.+.+.. ........++....+.+..++|.+...+... -.++
T Consensus 186 -~~~~l~~~~~~~~~~~~~~---~~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l--~~l~ 257 (450)
T PRK14087 186 -AVDILQKTHKEIEQFKNEI---CQNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQLFFSSDKSPELL--NGFD 257 (450)
T ss_pred -HHHHHHHhhhHHHHHHHHh---ccCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCcEEEECCCCHHHH--hhcc
Confidence 111111 1121222222 223499999999886321 1123455666666677764444443333322 2467
Q ss_pred HHHHccCc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 404 PALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 404 ~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
+.+.+||. .+.+.+|+.+++.+||+..++..+ ....++++++.+++..+.+
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCC
Confidence 99999996 579999999999999988777421 1236999999999998864
No 332
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.22 E-value=1.1e-10 Score=120.20 Aligned_cols=113 Identities=22% Similarity=0.417 Sum_probs=85.4
Q ss_pred CeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHH
Q 002068 752 YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (973)
Q Consensus 752 ~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 831 (973)
++||||||++.++-+.+..|.++++.- -..++|++||.|-..+....+ ...
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~------------iaPivifAsNrG~~~irGt~d--~~s--------------- 347 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP------------IAPIVIFASNRGMCTIRGTED--ILS--------------- 347 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC------------CCceEEEecCCcceeecCCcC--CCC---------------
Confidence 589999999999999999999999862 245799999987544433111 000
Q ss_pred HhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHH
Q 002068 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 908 (973)
Q Consensus 832 ~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~ 908 (973)
...++++|++|+ .+|...+++.+++++|+..... --.+++++++++.|...+. .+.|+-+++
T Consensus 348 PhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~---------~E~l~~~e~a~~~l~~~gt-----~tsLRy~vq 409 (456)
T KOG1942|consen 348 PHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQ---------VEGLQVEEEALDLLAEIGT-----STSLRYAVQ 409 (456)
T ss_pred CCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHh---------hhcceecHHHHHHHHhhcc-----chhHHHHHH
Confidence 234789999999 8999999999999999987653 2258899999999998643 244544444
No 333
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.20 E-value=3e-10 Score=123.06 Aligned_cols=95 Identities=22% Similarity=0.163 Sum_probs=67.5
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-CEEEEEccCch-------HHHhhhccCHHHHccCceEEecCCCH
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 420 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~i~iI~at~~~-------~~~~~~~~d~al~~Rf~~i~~~~p~~ 420 (973)
|+||||||+|.|- .+...+|.++++.. ...+|.|||.. +|.....++..|++||-.|...+++.
T Consensus 279 pGVLFIDEvHmLD--------iEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHMLD--------IECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGSB--------HHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhcc--------HHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 6799999999996 78899999999854 56678888843 22233457789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 421 ~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
+|..+|++.-++ ..++.++++++..+.+++.
T Consensus 351 ~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 351 EEIKQILKIRAK----EEDVEISEDALDLLTKIGV 381 (398)
T ss_dssp HHHHHHHHHHHH----HCT--B-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhh
Confidence 999999988777 4799999999999888764
No 334
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.20 E-value=1.5e-10 Score=121.64 Aligned_cols=186 Identities=17% Similarity=0.285 Sum_probs=111.7
Q ss_pred CCCCCC-Cc-hHHHHHHHHHhccCCC---CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc
Q 002068 253 KLDPVI-GR-DDEIRRCIQILSRRTK---NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 253 ~l~~ii-G~-~~~i~~li~~l~~~~~---~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+|+.+| |. .+..-.....+..... ++++|+||+|+|||+|.++++.++.... .+.+++.++...+...
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~-- 78 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIRE-- 78 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHH--
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHH--
Confidence 677775 64 3333344443333222 3468999999999999999999885421 2678888876655321
Q ss_pred ccchHH-HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHH
Q 002068 328 YRGEFE-DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 406 (973)
Q Consensus 328 ~~g~~e-~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al 406 (973)
+..... ..+..+.+.... .-+|+||++|.+.+.. .......+++....++|+.++|.+...+.. ...+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~---~DlL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~~--l~~~~~~L 151 (219)
T PF00308_consen 79 FADALRDGEIEEFKDRLRS---ADLLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPSE--LSGLLPDL 151 (219)
T ss_dssp HHHHHHTTSHHHHHHHHCT---SSEEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TTT--TTTS-HHH
T ss_pred HHHHHHcccchhhhhhhhc---CCEEEEecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCcc--ccccChhh
Confidence 100000 012223333332 2399999999986431 112345566667777887666655444332 22467999
Q ss_pred HccCc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 407 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 407 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
.+||. .+.+.+|+.+++.+|++.... ..++.++++++.+++....+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~----~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAK----ERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHH----HTT--S-HHHHHHHHHHTTS
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHH----HhCCCCcHHHHHHHHHhhcC
Confidence 99995 589999999999999988777 47888999999999887653
No 335
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.19 E-value=3.2e-10 Score=127.42 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=109.8
Q ss_pred CCCCchHHHHHHHHHhc-cCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCccc--------------CCCeEEEEEc
Q 002068 256 PVIGRDDEIRRCIQILS-RRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQAL--------------MNRKLISLDM 319 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~-~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~l--------------~~~~~~~l~~ 319 (973)
+++|.+..+.++..... ....+| +||+||||+|||++|.++|+.+.+....... ..-.+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57888888888888765 444667 8999999999999999999999654322111 1246778876
Q ss_pred ccccccccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCch
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLD 394 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~ 394 (973)
++.... .-..+.++++.+..... ++.-|++|||+|.|. .+++|.|+..++ ..+.++|.+||..
T Consensus 82 s~~~~~----~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 82 SDLRKI----DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------EDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred cccCCC----cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------HHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 654321 12344555555554433 345799999999998 578899999887 4588999999965
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDT 423 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~ 423 (973)
. .+-+.+++||+.+.|.+|+....
T Consensus 150 ~-----~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 150 S-----KILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred h-----hccchhhhcceeeecCCchHHHH
Confidence 5 56789999999999988655443
No 336
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.6e-11 Score=124.46 Aligned_cols=156 Identities=22% Similarity=0.406 Sum_probs=105.3
Q ss_pred ccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
++.+-|.-..+..+.+.+... +.|+.. |. .++||||||||||.+|++++..+ +.+|+.+..+++.
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~---Pk-g~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKP---PK-GLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV 203 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCC---Cc-eeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhh
Confidence 456777777777777665322 123332 33 69999999999999999999999 7889988888775
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHhhcCCeEecCCCcEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~v~~~Ll~~le~g~~~~~~g~~v 788 (973)
++ .+|.+...+ +..+..++...+||||+||||.. +..+|..|+.+++.-.--|
T Consensus 204 ~k-----yiGEsaRlI-----Remf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------ 267 (388)
T KOG0651|consen 204 DK-----YIGESARLI-----RDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------ 267 (388)
T ss_pred hh-----hcccHHHHH-----HHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------
Confidence 43 344443211 23344445566799999999964 3678999999887422112
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQ 856 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~ 856 (973)
...++-+|||+|. .+.+.|+|+ +|+|..+..|-++...
T Consensus 268 ~l~rVk~ImatNr------------------------------pdtLdpaLlRpGRldrk~~iPlpne~~ 307 (388)
T KOG0651|consen 268 TLHRVKTIMATNR------------------------------PDTLDPALLRPGRLDRKVEIPLPNEQA 307 (388)
T ss_pred hcccccEEEecCC------------------------------ccccchhhcCCccccceeccCCcchhh
Confidence 2245669999997 233556666 7888888777555443
No 337
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.8e-10 Score=128.73 Aligned_cols=163 Identities=19% Similarity=0.293 Sum_probs=107.6
Q ss_pred cccccc-chHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh
Q 002068 648 HKRVVG-QDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (973)
Q Consensus 648 ~~~v~G-q~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (973)
+..|+| |+.+++.+...+... +....+||+||+|+||+++|+.+++.+.+.+. .-...|+....-..+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~-~~~~~cg~C~~c~~~~- 73 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLER-NGVEPCGTCTNCKRID- 73 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCcCHHHHHHh-
Confidence 466777 888999988887632 22225799999999999999999999965321 0000122111000000
Q ss_pred hcCCCCC---------cccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 727 LIGAPPG---------YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 727 l~G~~~g---------~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
-|..|. .++.++...+.+.+. .+.+.|++|||+|.++.+.+|.|+..||+ ...++
T Consensus 74 -~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~ 141 (329)
T PRK08058 74 -SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGT 141 (329)
T ss_pred -cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCc
Confidence 011111 111111122223332 23467999999999999999999999997 34578
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
+||++|+. ...+.|.+.+|+ .++.|.+++.+++.+++..
T Consensus 142 ~~Il~t~~------------------------------~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 142 TAILLTEN------------------------------KHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eEEEEeCC------------------------------hHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 88888875 334677899999 8999999999998777653
No 338
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.18 E-value=8.1e-11 Score=117.64 Aligned_cols=170 Identities=17% Similarity=0.264 Sum_probs=115.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~ 725 (973)
..+++|.++.++.+.-.... | +-| +++|.||||||||+.+.++|+.+.|. ...++.+|.|+-..-..+.
T Consensus 26 l~dIVGNe~tv~rl~via~~---g----nmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE---G----NMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc---C----CCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 46799999999888665542 1 122 79999999999999999999999773 3445566665431111000
Q ss_pred hhcCCCCCcccccccchhhHHHH------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEec
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 799 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ts 799 (973)
..+..+.. ...+.|++|||+|++....|..|.+.||- ..+.+.|.+++
T Consensus 97 ---------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~ttRFalaC 150 (333)
T KOG0991|consen 97 ---------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSNTTRFALAC 150 (333)
T ss_pred ---------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcccchhhhhh
Confidence 11111111 24457999999999999999999999984 34567799999
Q ss_pred CCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCce
Q 002068 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKM 879 (973)
Q Consensus 800 N~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l 879 (973)
|.. ..+-.++.+|| .++.|..++..++..-+.... + +-.+
T Consensus 151 N~s------------------------------~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~-------k--~Ekv 190 (333)
T KOG0991|consen 151 NQS------------------------------EKIIEPIQSRC-AILRYSKLSDQQILKRLLEVA-------K--AEKV 190 (333)
T ss_pred cch------------------------------hhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHH-------H--HhCC
Confidence 972 11223577898 788888888776644433333 1 2247
Q ss_pred ecCHHHHHHHHhc
Q 002068 880 QVTDAAIQLLGSL 892 (973)
Q Consensus 880 ~~~~~a~~~L~~~ 892 (973)
.++++.++.+.-.
T Consensus 191 ~yt~dgLeaiift 203 (333)
T KOG0991|consen 191 NYTDDGLEAIIFT 203 (333)
T ss_pred CCCcchHHHhhhh
Confidence 7888888877653
No 339
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.18 E-value=1.6e-10 Score=135.16 Aligned_cols=173 Identities=16% Similarity=0.336 Sum_probs=116.2
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
.+++|+||||||||+|++++++.+... +..++++++.++.... ... +... ....+.+.++. ..+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~-~~~~-------~~~~~~~~~~~--~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNA-LRNN-------TMEEFKEKYRS--VDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHH-HHcC-------cHHHHHHHHhc--CCEEEE
Confidence 469999999999999999999998543 4567888888774431 111 1100 00123334443 459999
Q ss_pred ccccccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhcc
Q 002068 758 DEIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIF 835 (973)
Q Consensus 758 DEid~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 835 (973)
|||+.+.. ..+..|+.+++.-. . .+..+|+|+|..+..+ ..+
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~--~--------~~~~iiits~~~p~~l--------------------------~~l 261 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALH--E--------AGKQIVLTSDRPPKEL--------------------------PGL 261 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH--H--------CCCcEEEECCCCHHHH--------------------------HHH
Confidence 99998753 45667777665311 0 1123667777643222 114
Q ss_pred Chhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 836 RPEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 836 ~p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.+.+.+||. .++.|.+|+.+++..|++..+.. . .+.++++++++|++. +..+ +|.|...+.++.
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------~--~~~l~~e~l~~ia~~-~~~~--~R~l~~~l~~l~ 327 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------E--GIDLPDEVLEFIAKN-ITSN--VRELEGALNRLI 327 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHcC-cCCC--HHHHHHHHHHHH
Confidence 567888885 58999999999999999987753 2 477999999999995 4433 688777777654
No 340
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.17 E-value=1.7e-10 Score=129.37 Aligned_cols=152 Identities=26% Similarity=0.363 Sum_probs=110.0
Q ss_pred CCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHH
Q 002068 256 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 335 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~ 335 (973)
.++|+++.+..++..+..+ .++||.||||||||++|+.+|+.+ +.+++.+++.+........|...-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 3889999888888776444 489999999999999999999999 8899999988766555555543322
Q ss_pred HHHH-HHHHHHhCC----C--eEEEEccccccccCCCCCchhhHHHHHhhhhcC--------------CCEEEEEccCch
Q 002068 336 LKAV-LKEVTESEG----Q--IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--------------GELRCIGATTLD 394 (973)
Q Consensus 336 l~~~-~~~~~~~~~----~--~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------g~i~iI~at~~~ 394 (973)
.... .....-..+ . +|+|+|||.+.. ..+++.|..+|+. ..+.+|+|+|+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 2100 000000011 1 499999999886 5688899988864 245678888987
Q ss_pred HHHhhhccCHHHHccC-ceEEecCC-CHHHHHHHH
Q 002068 395 EYRKYIEKDPALERRF-QQVYVDQP-NVEDTISIL 427 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf-~~i~~~~p-~~~e~~~il 427 (973)
+|..-..++.++++|| -.++++.| +.++...++
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 7777678899999999 58999999 454444443
No 341
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.17 E-value=3.1e-10 Score=126.48 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=115.7
Q ss_pred CCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc--------
Q 002068 257 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA-------- 326 (973)
Q Consensus 257 iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~-------- 326 (973)
+||++..++++.+.+.+ ....++||+|++||||+++|++|...... .+.+++.+||+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChHHHHHHHhcc
Confidence 57888888888877644 44567999999999999999999986522 26789999998653110
Q ss_pred c---ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEc
Q 002068 327 K---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (973)
Q Consensus 327 ~---~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~a 390 (973)
. +.|.... -...+. ...+++||||||+.|. .+.+..|..+++.+ ++++|++
T Consensus 74 ~~g~~~ga~~~-~~G~~~----~a~gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQKR-HQGRFE----RADGGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCcccc-cCCchh----hCCCCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 0 0000000 001122 2246799999999998 56777777777644 4799999
Q ss_pred cCchHHH--hhhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhcC----CccCHHHHHHHHHhc
Q 002068 391 TTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG----VRISDSALVEAAILS 454 (973)
Q Consensus 391 t~~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~----v~i~~~~l~~l~~~s 454 (973)
|+.+... .--.+.+.|..||..+.|..|+..+|. .+++.++.++...++ ..++++++..+..+.
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 9876321 111345778889976666667655544 444555555443332 468888888776654
No 342
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=3.2e-10 Score=131.46 Aligned_cols=176 Identities=18% Similarity=0.367 Sum_probs=119.7
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhc--CCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHh-CCCeEEE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMF--NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR-RPYAVIL 756 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~--~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~Vl~ 756 (973)
.+++|+|++|+|||+|++++++.+. ..+..++++++.++......+ ++... +.+...... ....+|+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~--l~~~~--------~~~~~~~~~~~~~dvLi 211 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI--LQKTH--------KEIEQFKNEICQNDVLI 211 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH--HHHhh--------hHHHHHHHHhccCCEEE
Confidence 3599999999999999999999774 234667788887765432111 11100 112122111 2335999
Q ss_pred EccccccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhc
Q 002068 757 FDEIEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 834 (973)
Q Consensus 757 lDEid~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 834 (973)
||||+.+. +..++.|+.+++.-. + .+..+|+|+|..+..+ ..
T Consensus 212 IDDiq~l~~k~~~~e~lf~l~N~~~--~--------~~k~iIltsd~~P~~l--------------------------~~ 255 (450)
T PRK14087 212 IDDVQFLSYKEKTNEIFFTIFNNFI--E--------NDKQLFFSSDKSPELL--------------------------NG 255 (450)
T ss_pred EeccccccCCHHHHHHHHHHHHHHH--H--------cCCcEEEECCCCHHHH--------------------------hh
Confidence 99999887 667788888876421 1 1224788888744222 23
Q ss_pred cChhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 835 FRPEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 835 f~p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.+.+.+||. .++.+.||+.+++.+|++..+.. .|..+.++++++++|+.. ..++ +|.|...+.++.
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~-~~gd--~R~L~gaL~~l~ 324 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNY-YSDD--VRKIKGSVSRLN 324 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHc-cCCC--HHHHHHHHHHHH
Confidence 5667888884 58999999999999999988753 354457999999999995 3333 788887777754
No 343
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.16 E-value=6.9e-11 Score=103.47 Aligned_cols=81 Identities=36% Similarity=0.765 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Q 002068 852 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIV 931 (973)
Q Consensus 852 l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~ 931 (973)
|+.+++.+|+...+.++.+++..+|+.+.++++++++|++.+|++.+|||+|++.|++.+.+++|+.++.+++.+|++|.
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E
Q 002068 932 I 932 (973)
Q Consensus 932 v 932 (973)
|
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 6
No 344
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.16 E-value=7.5e-11 Score=118.49 Aligned_cols=111 Identities=26% Similarity=0.398 Sum_probs=73.8
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHH---HHhCCCeE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV---TESEGQII 351 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~---~~~~~~~I 351 (973)
+..+++|+||+|||||.+|+.||+.+.-+ ...+++.+|++.+..+.. .+..+..++... .......|
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~------~~~~~~~~d~s~~~~~~~----~~~~~~~l~~~~~~~v~~~~~gV 71 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVG------SERPLIRIDMSEYSEGDD----VESSVSKLLGSPPGYVGAEEGGV 71 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-S------SCCEEEEEEGGGHCSHHH----CSCHCHHHHHHTTCHHHHHHHTE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccC------CccchHHHhhhcccccch----HHhhhhhhhhcccceeeccchhh
Confidence 45688999999999999999999999311 246899999999875111 111122222111 00111239
Q ss_pred EEEccccccccCCCCC---chhhHHHHHhhhhcCC-------------CEEEEEccCchH
Q 002068 352 LFIDEIHTVVGAGATN---GAMDAGNLLKPMLGRG-------------ELRCIGATTLDE 395 (973)
Q Consensus 352 LfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~~g-------------~i~iI~at~~~~ 395 (973)
+||||||.+.+..... ....+++.|+++++.| ++.+|+|+|...
T Consensus 72 VllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 72 VLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999999998642222 2347889999999744 678999998654
No 345
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=2e-10 Score=131.96 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=131.2
Q ss_pred hhhcHHHHHhcCCCCCCCCchHHHHHHHHHhc----------------------------------cCCCCCceEECCCC
Q 002068 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILS----------------------------------RRTKNNPVLIGEPG 286 (973)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~----------------------------------~~~~~~~LL~GppG 286 (973)
..+=|.++|+|.+|.+++|-+..-++++..|+ |..+.-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 33458999999999999998877776665431 11223358999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---HhCCCeEEEEccccccccC
Q 002068 287 VGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGA 363 (973)
Q Consensus 287 ~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~---~~~~~~ILfiDEi~~l~~~ 363 (973)
-||||||+.+|+.. |..++++|.++-.++.. +.+++..++..-. +...|.+|+|||||--.
T Consensus 337 lGKTTLAHViAkqa----------GYsVvEINASDeRt~~~----v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-- 400 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA----------GYSVVEINASDERTAPM----VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-- 400 (877)
T ss_pred CChhHHHHHHHHhc----------CceEEEecccccccHHH----HHHHHHHHHhhccccccCCCcceEEEecccCCc--
Confidence 99999999999997 99999999988765433 3444443332211 12468899999998654
Q ss_pred CCCCchhhHHHHHhhhhc------CC-----------------CEEEEEccCchHHHhhhccCHHHHc-c-C-ceEEecC
Q 002068 364 GATNGAMDAGNLLKPMLG------RG-----------------ELRCIGATTLDEYRKYIEKDPALER-R-F-QQVYVDQ 417 (973)
Q Consensus 364 ~~~~~~~~~~~~L~~~l~------~g-----------------~i~iI~at~~~~~~~~~~~d~al~~-R-f-~~i~~~~ 417 (973)
..+.++|+.++. .| .-.|||.||.- ..|+|+. | | ..|.|.+
T Consensus 401 ------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~ii~f~~ 467 (877)
T KOG1969|consen 401 ------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEIIAFVP 467 (877)
T ss_pred ------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEEEEecC
Confidence 334455555542 11 11367777754 2377766 3 3 4689999
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 418 PNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 418 p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
|+..-..+-|+.+|.+ .+...+..++..+.+++..-|.
T Consensus 468 p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DIR 505 (877)
T KOG1969|consen 468 PSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDIR 505 (877)
T ss_pred CChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchHH
Confidence 9999888899999985 6888899999999999875554
No 346
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.7e-10 Score=117.59 Aligned_cols=107 Identities=25% Similarity=0.352 Sum_probs=76.0
Q ss_pred CCeEEEEccccccccCCCCCc----hhhHHHHHhhhhcC------------CCEEEEEccCchHHHhhhccCHHHHccCc
Q 002068 348 GQIILFIDEIHTVVGAGATNG----AMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ 411 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~~----~~~~~~~L~~~l~~------------g~i~iI~at~~~~~~~~~~~d~al~~Rf~ 411 (973)
..+|+||||||.+...+..++ ..-++.=|+|+++. ..+.+|++....- .+--.+-|.|.-||.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRfP 328 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRFP 328 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCCc
Confidence 356999999999997664332 12355667788752 2678898876432 111246699999997
Q ss_pred -eEEecCCCHHHHHHHH----HHHHHHHhh---hc--CCccCHHHHHHHHHhcc
Q 002068 412 -QVYVDQPNVEDTISIL----RGLRERYEL---HH--GVRISDSALVEAAILSD 455 (973)
Q Consensus 412 -~i~~~~p~~~e~~~il----~~~~~~~~~---~~--~v~i~~~~l~~l~~~s~ 455 (973)
+|.+...+.++...|| ..+.++|.. .. .+.|++++++.+++.+.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 7999999999999998 455666552 22 35689999998888874
No 347
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.15 E-value=7.6e-11 Score=130.82 Aligned_cols=183 Identities=21% Similarity=0.323 Sum_probs=124.7
Q ss_pred CCCCCCCchHHHHHHHHHhc--cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-------
Q 002068 253 KLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI------- 323 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~--~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~------- 323 (973)
.+..+||+...++++++.+. .+...+|||.|++||||.-+|++|.+.-.. ++.+++.+||+.+-
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------~~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------RDKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------cCCCceeeeccccchHHHHHH
Confidence 56689999999999998753 466678999999999999999999987633 37899999998773
Q ss_pred -ccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEE
Q 002068 324 -AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIG 389 (973)
Q Consensus 324 -~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~ 389 (973)
.|+ ..|.|...+..-..... ...++-||+|||..|. ...+.-|++++..| +|++|+
T Consensus 294 LFGH-eKGAFTGA~~~r~GrFE-lAdGGTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIA 363 (550)
T COG3604 294 LFGH-EKGAFTGAINTRRGRFE-LADGGTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIA 363 (550)
T ss_pred Hhcc-cccccccchhccCccee-ecCCCeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEe
Confidence 121 12222222211001111 1246799999999997 66788888888654 779999
Q ss_pred ccCchHHHhhhccCH----HHHccCceEEecCCCHHHH----HHHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 390 ATTLDEYRKYIEKDP----ALERRFQQVYVDQPNVEDT----ISILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 390 at~~~~~~~~~~~d~----al~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
|||.+-... -.+. .|.-|+..+.+..|+..|| .-+...+++++....+ +.++.++++.+.++.
T Consensus 364 ATNRDL~~~--V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 364 ATNRDLEEM--VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred ccchhHHHH--HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 999874321 1233 3444777677777765444 4444677776665544 578999998876654
No 348
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=3.3e-10 Score=110.76 Aligned_cols=150 Identities=25% Similarity=0.389 Sum_probs=98.7
Q ss_pred cchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCC
Q 002068 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP 732 (973)
Q Consensus 653 Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~ 732 (973)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.............+..
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 5566666665555421 112699999999999999999999986666788999988775543222211100
Q ss_pred CcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCC
Q 002068 733 GYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDE 812 (973)
Q Consensus 733 g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~ 812 (973)
..............++|+|||++.+.+.....+++.++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00011122234556899999999998888888888887642210 12356788999987321
Q ss_pred CCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCC
Q 002068 813 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 851 (973)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~ 851 (973)
..+.+.+.+|++..+.++|
T Consensus 133 --------------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------------CCcChhHHhhhccEeecCC
Confidence 1356678899987777764
No 349
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.14 E-value=2.5e-11 Score=123.02 Aligned_cols=134 Identities=20% Similarity=0.283 Sum_probs=70.5
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc----ccccccccc
Q 002068 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM----GALIAGAKY 328 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~----~~~~~g~~~ 328 (973)
.|.+|+||+...+.+.-... ...|+||+||||||||++|+.+...|..-...+.+.-..++++.. ..+.....+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 37899999877776665543 457999999999999999999998875433222221111211110 000000000
Q ss_pred cc-hHHHHHHHHHHH--------HHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------C
Q 002068 329 RG-EFEDRLKAVLKE--------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------E 384 (973)
Q Consensus 329 ~g-~~e~~l~~~~~~--------~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------~ 384 (973)
+- .-......++.. +. ...++|||+||+..+. ..+.+.|+..++.| +
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeis-lAh~GVLflDE~~ef~--------~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~ 149 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEIS-LAHRGVLFLDELNEFD--------RSVLDALRQPLEDGEVTISRAGGSVTYPAR 149 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGG-GGTTSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHH-HhcCCEEEechhhhcC--------HHHHHHHHHHHHCCeEEEEECCceEEEecc
Confidence 00 000001111111 11 1235799999998886 66889999999877 5
Q ss_pred EEEEEccCchHHH
Q 002068 385 LRCIGATTLDEYR 397 (973)
Q Consensus 385 i~iI~at~~~~~~ 397 (973)
+.+|+|+|+.+..
T Consensus 150 f~lv~a~NPcpCG 162 (206)
T PF01078_consen 150 FLLVAAMNPCPCG 162 (206)
T ss_dssp EEEEEEE-S----
T ss_pred cEEEEEecccccc
Confidence 5899999987653
No 350
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.14 E-value=3e-10 Score=135.98 Aligned_cols=187 Identities=24% Similarity=0.319 Sum_probs=124.7
Q ss_pred HhcCCCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 249 ASAGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
.+.+.++.+||++..++++++.+.+ ....++||+||+|||||++|++|+..... .+.+++.+||..+....
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSETL 262 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHHH
Confidence 3446889999999999999987754 45568999999999999999999987522 26789999998763110
Q ss_pred ---c----ccchHHHHH---HHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 327 ---K----YRGEFEDRL---KAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 327 ---~----~~g~~e~~l---~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
. ..|.+.... ...+. ...+++||||||+.|. .+.+..|..+++.+
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~----~a~~GtL~ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 330 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFE----LADGGTLFLDEIGEIS--------PAFQAKLLRVLQEGEFERVGGNRTLKV 330 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCccc----ccCCCeEEEechhhCC--------HHHHHHHHHHHhcCcEEECCCCceEee
Confidence 0 000000000 00111 1235799999999997 56777787777644
Q ss_pred CEEEEEccCchHHHh--hhccCHHHHccCceEEecCCCH----HHHHHHHHHHHHHHhhhcC--CccCHHHHHHHHHhc
Q 002068 384 ELRCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG--VRISDSALVEAAILS 454 (973)
Q Consensus 384 ~i~iI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~----~e~~~il~~~~~~~~~~~~--v~i~~~~l~~l~~~s 454 (973)
++++|++|+.+.... .-.+.+.|..||..+.+..|+. ++...+++.++.++...++ +.++++++..+..+.
T Consensus 331 ~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~ 409 (534)
T TIGR01817 331 DVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK 409 (534)
T ss_pred cEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC
Confidence 479999988764221 1134577888887666666654 4555666777766543332 678888888776653
No 351
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.14 E-value=8.9e-10 Score=123.01 Aligned_cols=182 Identities=20% Similarity=0.213 Sum_probs=118.5
Q ss_pred CCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc-----
Q 002068 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG----- 325 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g----- 325 (973)
.++.+||.+..++++++.+.+ ....++||+|++||||+++|+++...... .+.+++.+||..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHHHHHHH
Confidence 467799999999999887654 44567999999999999999999865411 2678999999876311
Q ss_pred ---cc---ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEE
Q 002068 326 ---AK---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (973)
Q Consensus 326 ---~~---~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~ 386 (973)
.. +.|..... ...+. ...++.|||||++.|. ...+..|..+++.+ +++
T Consensus 77 lfg~~~~~~~g~~~~~-~g~l~----~a~gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKRH-PGRFE----RADGGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCccccc-CCchh----ccCCCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 00 00100000 01121 2345689999999998 55677777777543 478
Q ss_pred EEEccCchHHH--hhhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhcC----CccCHHHHHHHHHhc
Q 002068 387 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG----VRISDSALVEAAILS 454 (973)
Q Consensus 387 iI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~----v~i~~~~l~~l~~~s 454 (973)
+|++|+.+... ..-.+.+.|..||..+.|..|+..+|. .+++.++..+...++ ..++++++..+..+.
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~ 221 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR 221 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC
Confidence 99998875321 112355788889976667777665554 445555555443333 357888887776553
No 352
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=3.8e-10 Score=131.99 Aligned_cols=172 Identities=17% Similarity=0.322 Sum_probs=118.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC--CCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 758 (973)
+++|+|++|+|||+|+.+|++.+.. .+..++++++.++....... +.. + ....+.+.++. ..||+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~------~--~~~~f~~~y~~--~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD------G--KGDSFRRRYRE--MDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh------c--cHHHHHHHhhc--CCEEEEe
Confidence 5999999999999999999998853 34677888888775432111 100 0 00123333333 3699999
Q ss_pred cccccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccC
Q 002068 759 EIEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (973)
Q Consensus 759 Eid~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 836 (973)
||+.+. ...+..|+.+++.-. + .+.-+|+|||.....+ ..+.
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~--e--------~gk~IIITSd~~P~eL--------------------------~~l~ 428 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH--N--------ANKQIVLSSDRPPKQL--------------------------VTLE 428 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH--h--------cCCCEEEecCCChHhh--------------------------hhcc
Confidence 999885 345677777776411 0 1234677888754332 1256
Q ss_pred hhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 837 PEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 837 p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.|.+||. .++.+.+++.+....|++..+.. . .+.+++++++||+.. +..+ .|.|..++.++.
T Consensus 429 ~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-------r--~l~l~~eVi~yLa~r-~~rn--vR~LegaL~rL~ 493 (617)
T PRK14086 429 DRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-------E--QLNAPPEVLEFIASR-ISRN--IRELEGALIRVT 493 (617)
T ss_pred HHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHh-ccCC--HHHHHHHHHHHH
Confidence 67888884 58999999999999999986633 3 478999999999995 4444 788888887754
No 353
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-09 Score=118.99 Aligned_cols=170 Identities=24% Similarity=0.355 Sum_probs=118.9
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccch-HHHHHHHHHHHHHH---hCCCe
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE-FEDRLKAVLKEVTE---SEGQI 350 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~-~e~~l~~~~~~~~~---~~~~~ 350 (973)
.+.|+||+||+|+|||.||+.||+.+ +.+|.-.||..+.. ..|+|+ +|.-+.+++..+.. ....+
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 56899999999999999999999999 89999999998864 348885 66667777766542 23467
Q ss_pred EEEEccccccccCCCCC------chhhHHHHHhhhhc--------C-------C--------CEEEEEccCchHHHhh--
Q 002068 351 ILFIDEIHTVVGAGATN------GAMDAGNLLKPMLG--------R-------G--------ELRCIGATTLDEYRKY-- 399 (973)
Q Consensus 351 ILfiDEi~~l~~~~~~~------~~~~~~~~L~~~l~--------~-------g--------~i~iI~at~~~~~~~~-- 399 (973)
|+||||+|.+..+..+- +..-++..|+.+++ + | +|.+|+........++
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 99999999998332211 22445666776764 1 1 4455554322211111
Q ss_pred -------------------------------------------------hccCHHHHccCc-eEEecCCCHHHHHHHH--
Q 002068 400 -------------------------------------------------IEKDPALERRFQ-QVYVDQPNVEDTISIL-- 427 (973)
Q Consensus 400 -------------------------------------------------~~~d~al~~Rf~-~i~~~~p~~~e~~~il-- 427 (973)
|.+-|.|.-||. .|.|...+.++...+|
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 123488888997 4688888999999998
Q ss_pred --HHHHHHHhhhc-----CCccCHHHHHHHHHhcc
Q 002068 428 --RGLRERYELHH-----GVRISDSALVEAAILSD 455 (973)
Q Consensus 428 --~~~~~~~~~~~-----~v~i~~~~l~~l~~~s~ 455 (973)
..+..+|.... .+.+++++++.+++++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 34556665433 34689999999998874
No 354
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.7e-10 Score=135.00 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=138.6
Q ss_pred ccccccchHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
|..|-|.+.++..+.+.+-... .++..| . .+||+||||||||.+|+++|..+-..+. -+.+.|..-.
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpP---r-gvL~~GppGTGkTl~araLa~~~s~~~~-kisffmrkga 338 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPP---R-GVLFHGPPGTGKTLMARALAAACSRGNR-KISFFMRKGA 338 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCC---c-ceeecCCCCCchhHHHHhhhhhhccccc-ccchhhhcCc
Confidence 5778888888888888774321 223323 2 5999999999999999999988843222 2222222211
Q ss_pred chhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCc
Q 002068 720 EKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
.-.++ ++|..+ ...+++.+++..++|+||||||-++ ..+...||.+|+.- +
T Consensus 339 --D~lsk-------wvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl---d---- 402 (1080)
T KOG0732|consen 339 --DCLSK-------WVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL---D---- 402 (1080)
T ss_pred --hhhcc-------ccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---C----
Confidence 11222 344332 2356788888899999999999444 46889999999852 1
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhh--hcccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF--MNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~l--l~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
....+++|.+||. .....|++ -+|||..+.|+.++.++..+|+..+
T Consensus 403 --sRgqVvvigATnR------------------------------pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ih 450 (1080)
T KOG0732|consen 403 --SRGQVVVIGATNR------------------------------PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIH 450 (1080)
T ss_pred --CCCceEEEcccCC------------------------------ccccchhhcCCcccceeEeeeCCchHHHHHHHHHh
Confidence 2246789999997 23356777 4999999999999999999998864
Q ss_pred HHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENE 914 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~ 914 (973)
= ....-.+....+++|++. ...||...|+-....+...+
T Consensus 451 t---------rkw~~~i~~~l~~~la~~--t~gy~gaDlkaLCTeAal~~ 489 (1080)
T KOG0732|consen 451 T---------RKWEPPISRELLLWLAEE--TSGYGGADLKALCTEAALIA 489 (1080)
T ss_pred c---------cCCCCCCCHHHHHHHHHh--ccccchHHHHHHHHHHhhhh
Confidence 3 233456788888888884 34455555777666644443
No 355
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.12 E-value=2.9e-10 Score=126.51 Aligned_cols=204 Identities=20% Similarity=0.263 Sum_probs=131.3
Q ss_pred cCCCCCCCCchHHHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc-
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK- 327 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~- 327 (973)
...++.+||.+..++++++.+.+- ...++|++|++||||+.+|+.|+..- ... .+.+++.+||+.+.....
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s-~r~-----~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS-ARR-----AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh-hcc-----cCCCEEEEEHHHhCcCHHH
Confidence 345677999999999999988663 34578999999999999999999433 221 378999999988743211
Q ss_pred ----------ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------C
Q 002068 328 ----------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (973)
Q Consensus 328 ----------~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~ 384 (973)
+.|.... -..+|+. ..+++||+||||.|. ...+..|..++++| +
T Consensus 148 ~eLFG~~kGaftGa~~~-k~Glfe~----A~GGtLfLDEI~~LP--------~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQGG-KAGLFEQ----ANGGTLFLDEIHRLP--------PEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHhccccceeecccCC-cCchhee----cCCCEEehhhhhhCC--------HhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 1121110 1123332 246799999999998 55677888888764 7
Q ss_pred EEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHH----HHHHHHHHHHHhhhcCCcc---CHHHHHHHHHhcccc
Q 002068 385 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDT----ISILRGLRERYELHHGVRI---SDSALVEAAILSDRY 457 (973)
Q Consensus 385 i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~v~i---~~~~l~~l~~~s~~~ 457 (973)
+++|+|||.+.-...+.- ..|.+|+..+.|..|+..+| ..++..++..+....+..+ +++++..+..+.-
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~-- 291 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDW-- 291 (403)
T ss_pred ceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC--
Confidence 889999998765443321 36777666666777766554 4445666666555554433 3466666655531
Q ss_pred cCCCCCchHHHHHHHHHHhhhh
Q 002068 458 ISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 458 i~~r~~p~~a~~lld~a~~~~~ 479 (973)
-+ .-....++++.+|..+.
T Consensus 292 pG---NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 292 PG---NIRELKNLVERAVAQAS 310 (403)
T ss_pred CC---cHHHHHHHHHHHHHHhc
Confidence 01 11234456666776653
No 356
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=2.5e-10 Score=132.17 Aligned_cols=173 Identities=18% Similarity=0.362 Sum_probs=113.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 758 (973)
+++|+||||+|||+|++++++.+... +..++++++.++..... .. +.. + ....+.+..+ ....||+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~-~~-~~~--~-----~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DS-MKE--G-----KLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HH-Hhc--c-----cHHHHHHHHH-hcCCEEEEe
Confidence 69999999999999999999987432 34678888877644321 11 100 0 0012222222 235699999
Q ss_pred cccccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccC
Q 002068 759 EIEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (973)
Q Consensus 759 Eid~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 836 (973)
|++.+. ...+..|+..++.-. + .+..+|+||+..+..+ ..+.
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~--~--------~~k~iIitsd~~p~~l--------------------------~~l~ 245 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELH--D--------SGKQIVICSDREPQKL--------------------------SEFQ 245 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHH--H--------cCCeEEEECCCCHHHH--------------------------HHHH
Confidence 999774 345666666664310 0 1224677777543222 1244
Q ss_pred hhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 837 PEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 837 p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.+.+||. .++.+.||+.+++..|++..+.. . .+.++++++++|++. ...+ +|.|...+.+..
T Consensus 246 ~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~-------~--~~~l~~ev~~~Ia~~-~~~~--~R~L~g~l~~l~ 310 (440)
T PRK14088 246 DRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI-------E--HGELPEEVLNFVAEN-VDDN--LRRLRGAIIKLL 310 (440)
T ss_pred HHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHhc-cccC--HHHHHHHHHHHH
Confidence 56777873 48999999999999999876642 2 467899999999995 4433 788888888754
No 357
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.12 E-value=1e-09 Score=109.70 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=96.6
Q ss_pred CchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------cCCCeEEEEEcccccc
Q 002068 259 GRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------LMNRKLISLDMGALIA 324 (973)
Q Consensus 259 G~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~-------------l~~~~~~~l~~~~~~~ 324 (973)
||+..++.+...+.....+| +||+||+|+||+++|+.+|+.+.+.+.... .....++.++.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 78888999999888877777 599999999999999999999976543211 224456666433210
Q ss_pred cccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhh
Q 002068 325 GAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 399 (973)
Q Consensus 325 g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~ 399 (973)
..-..+.++.+.+.+... ++.-|++|||+|.|. .+++|.|+..||+. .+++|.+|+...
T Consensus 80 ----~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 80 ----KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp ----SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred ----chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 011123455555554432 345699999999998 67899999999854 788888888776
Q ss_pred hccCHHHHccCceEEecCCC
Q 002068 400 IEKDPALERRFQQVYVDQPN 419 (973)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~p~ 419 (973)
.+-|.++|||..+.|++.|
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 6889999999999987653
No 358
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=2.3e-09 Score=119.02 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=110.5
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------cCCCeEEEEEcccccccccccchHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------LMNRKLISLDMGALIAGAKYRGEFEDRLKAVL 340 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~ 340 (973)
.++.+||+||+|+|||++|+.+|+.+.+.+.... ..+-.++.+.... +.+ .-..+.++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~--~i~id~iR~l~ 95 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADK--TIKVDQVRELV 95 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCC--CCCHHHHHHHH
Confidence 3445789999999999999999999976431100 0111344442210 001 11234566666
Q ss_pred HHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEe
Q 002068 341 KEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYV 415 (973)
Q Consensus 341 ~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~ 415 (973)
+.+... ++.-|++||++|.|. .+++|.|+..+|+ +++.+|.+|+... .+.|.++|||+.+.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQQQAC 162 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhceeeeC
Confidence 665542 345688999999998 6688889889985 5788888888876 588999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 416 DQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 416 ~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
.+|+.++..+.|..... ..+++....++.++. ..|.+|..+++
T Consensus 163 ~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~------Gsp~~A~~l~~ 205 (328)
T PRK05707 163 PLPSNEESLQWLQQALP--------ESDERERIELLTLAG------GSPLRALQLHE 205 (328)
T ss_pred CCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcC------CCHHHHHHHHC
Confidence 99999988776653211 234555555566664 33556666544
No 359
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.5e-10 Score=126.10 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=140.5
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 642 HLEEELHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 642 ~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
+.....|..+.|.+.+.+.+...+..... .+..-+.|...+|+.||||+|||+|+++||-++ ...|..+..+++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassL 222 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSL 222 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHh
Confidence 33445678899999999888887754322 111223444569999999999999999999998 677888877776
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
..+ ..|... .-...++...+...++|+|+||||++- +.....++--++... .-
T Consensus 223 tsK-----~~Ge~e-----K~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~-s~----- 286 (428)
T KOG0740|consen 223 TSK-----YVGESE-----KLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN-SA----- 286 (428)
T ss_pred hhh-----ccChHH-----HHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc-CC-----
Confidence 544 233221 112356677778888999999999753 223333332232211 11
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
.-.++++|.|||.. .+ .+.+++.||...+.++.++.+....++...|.+
T Consensus 287 -~~drvlvigaTN~P------------------~e------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~ 335 (428)
T KOG0740|consen 287 -PDDRVLVIGATNRP------------------WE------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE 335 (428)
T ss_pred -CCCeEEEEecCCCc------------------hH------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh
Confidence 11277899999982 11 233566688778889999999999999998865
Q ss_pred HHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHH
Q 002068 868 VQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAK 917 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~ 917 (973)
+ ...+.+.-++.|++. ...|+.-.+...+......++..
T Consensus 336 -------~--~~~l~~~d~~~l~~~--Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 336 -------Q--PNGLSDLDISLLAKV--TEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred -------C--CCCccHHHHHHHHHH--hcCcccccHHHHHHHhhcCchhh
Confidence 2 234666677777773 23355556666666665555543
No 360
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.12 E-value=8.4e-10 Score=114.17 Aligned_cols=103 Identities=21% Similarity=0.386 Sum_probs=82.1
Q ss_pred CeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHH
Q 002068 752 YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (973)
Q Consensus 752 ~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 831 (973)
++||||||++.++-+.+..|..++++ ++ -.++|++||.|...+.......+
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~-----------d~-~PiiimaTNrgit~iRGTn~~Sp----------------- 339 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALEN-----------DM-APIIIMATNRGITRIRGTNYRSP----------------- 339 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhh-----------cc-CcEEEEEcCCceEEeecCCCCCC-----------------
Confidence 58999999999999999999999997 33 24688999987665543322111
Q ss_pred HhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCC
Q 002068 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGY 894 (973)
Q Consensus 832 ~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~ 894 (973)
..++-+|++|+ .+|...||+.+++++|+...+.+ -.+.++++|++.|...+.
T Consensus 340 -hGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~E---------Edv~m~~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 340 -HGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQE---------EDVEMNPDALDLLTKIGE 391 (454)
T ss_pred -CCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhh---------hccccCHHHHHHHHHhhh
Confidence 23677899999 89999999999999999987743 258899999999998654
No 361
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.12 E-value=2.4e-10 Score=129.42 Aligned_cols=183 Identities=18% Similarity=0.274 Sum_probs=127.1
Q ss_pred CCCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc------
Q 002068 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI------ 323 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~------ 323 (973)
....++||+...++++.+.+.+ ....++|++|++||||..+|++|++.-.. .+.+|+.+||+.+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-------~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-------AKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-------cCCCceeeecccCCHHHHHH
Confidence 3567899999988888887644 55678999999999999999999987533 36799999998772
Q ss_pred --ccccccchHHHHHHH---HHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CE
Q 002068 324 --AGAKYRGEFEDRLKA---VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (973)
Q Consensus 324 --~g~~~~g~~e~~l~~---~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i 385 (973)
.|+ ..|.|...... .|+. ..++.||||||..|. .+++.-|+++++.+ ++
T Consensus 211 ELFGh-ekGAFTGA~~~r~G~fE~----A~GGTLfLDEI~~mp--------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 211 ELFGH-EKGAFTGAITRRIGRFEQ----ANGGTLFLDEIGEMP--------LELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred Hhhcc-cccCcCCcccccCcceeE----cCCceEEeeccccCC--------HHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 121 11222222111 2222 246799999999997 77888888888643 78
Q ss_pred EEEEccCchHHHhh--hccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 386 RCIGATTLDEYRKY--IEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 386 ~iI~at~~~~~~~~--~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
+||+||+.+-.... -.+-..|.-|+..+.+..|+..||. -++++++.++....+ ..++++++..+..+.
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~ 355 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYD 355 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 89999998753211 1233667779988888888765554 445666666655443 468888887776554
No 362
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=3.7e-10 Score=127.24 Aligned_cols=152 Identities=22% Similarity=0.318 Sum_probs=97.0
Q ss_pred CCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE----ccccccccccc
Q 002068 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD----MGALIAGAKYR 329 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~----~~~~~~g~~~~ 329 (973)
++++++.+..++.++..|.. +.|++|+||||||||++|+.+|..+.....+ ....++.+. ..+++.|.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 56688899999999998864 4599999999999999999999988432211 112222222 22333333222
Q ss_pred ch----HHHHHHHHHHHHHHh-CCCeEEEEccccccccCCCCCchhhHHHHHhhhh------------------------
Q 002068 330 GE----FEDRLKAVLKEVTES-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML------------------------ 380 (973)
Q Consensus 330 g~----~e~~l~~~~~~~~~~-~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l------------------------ 380 (973)
+. ....+.+++..+... ..+.||||||+++...+.. ..-+..++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ki-------FGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKV-------FGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHh-------hhhhhhhccccccccccceeeecccccccccc
Confidence 11 011234455555543 3578999999987653221 11111111
Q ss_pred cCCCEEEEEccCchHHHhhhccCHHHHccCceEEecCC
Q 002068 381 GRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQP 418 (973)
Q Consensus 381 ~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p 418 (973)
-..++.+|||+|..+ +....+|.||+|||..|.+.+.
T Consensus 322 iP~Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 322 VPENVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred CCCCeEEEEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 134789999999987 4555699999999998888763
No 363
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.10 E-value=7.5e-10 Score=134.10 Aligned_cols=162 Identities=23% Similarity=0.336 Sum_probs=104.3
Q ss_pred CCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCC----C-----Cc----------------c
Q 002068 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD----V-----PQ----------------A 308 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~----~-----p~----------------~ 308 (973)
|..|||++..+..+.-.+......++||.||+|||||++|++|++.+..-. . |. .
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 678999999887777666555557899999999999999999999883100 0 00 0
Q ss_pred cCCCeEEEEEcccccccccccch--HHHHHHH---HH-HHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC
Q 002068 309 LMNRKLISLDMGALIAGAKYRGE--FEDRLKA---VL-KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 382 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~--~e~~l~~---~~-~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 382 (973)
....+++.+.++.... ...|. ++..+.. .+ ........++||||||++.+. ...++.|...++.
T Consensus 83 ~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------~~~q~~Ll~~le~ 152 (633)
T TIGR02442 83 QRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------DHLVDVLLDAAAM 152 (633)
T ss_pred cCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------HHHHHHHHHHHhc
Confidence 1134566654432211 11121 1111100 00 000011235699999999997 5678888888876
Q ss_pred C---------------CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCC-CHHHHHHHHHH
Q 002068 383 G---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRG 429 (973)
Q Consensus 383 g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p-~~~e~~~il~~ 429 (973)
| ++.+|+++|+.+. .+.++|.+||. .|.++.+ +.+++.++++.
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 5 3788999887642 57899999997 5777776 45777777754
No 364
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.10 E-value=8.1e-10 Score=108.00 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=92.2
Q ss_pred CCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHH
Q 002068 258 IGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLK 337 (973)
Q Consensus 258 iG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~ 337 (973)
+|++..+..+...+......+++++||||||||++++.+++.+.. .+.+++.+++..................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 477888899988887767788999999999999999999998842 2567888887665433221111100000
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc----CCCEEEEEccCchHHHhhhccCHHHHccCc-e
Q 002068 338 AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALERRFQ-Q 412 (973)
Q Consensus 338 ~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~----~g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~ 412 (973)
...........+.+|+|||++.+.... .......+..... ..++.+|++++.... ...++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 111112223457899999999873110 1122233333332 367899999887753 246788999995 5
Q ss_pred EEec
Q 002068 413 VYVD 416 (973)
Q Consensus 413 i~~~ 416 (973)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 5543
No 365
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.09 E-value=5.3e-09 Score=108.27 Aligned_cols=178 Identities=20% Similarity=0.362 Sum_probs=121.2
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
+.++|.+..++.|.+.......|. |-.++|++|+.|||||++++++...+...+..++.+.-.++..-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-----pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-----CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------
Confidence 568899988888888877766553 34489999999999999999999999877777888777665332
Q ss_pred CCCCCcccccccchhhHHHHhCCC-eEEEEcccccc-CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCC---h
Q 002068 729 GAPPGYVGYEEGGQLTEVVRRRPY-AVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG---S 803 (973)
Q Consensus 729 G~~~g~~g~~~~~~l~~~~~~~~~-~Vl~lDEid~l-~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~---~ 803 (973)
..+.+.++..|. =|||+|++--= ...-...|..+||.|--. ...|++|.+|||.- .
T Consensus 95 ------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-------~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 95 ------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-------RPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-------CCCcEEEEEecchhhccc
Confidence 134445554433 49999987532 345678888888865322 34699999999962 1
Q ss_pred hhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
+...+... .... .....+.+.+ .+ .|.+||...|.|.|++.++..+|+..++.+
T Consensus 156 E~~~d~~~-~~~~---eih~~d~~eE----kl--SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 156 ESFSDRED-IQDD---EIHPSDTIEE----KL--SLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred hhhhhccC-CCcc---ccCcchHHHH----HH--hHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 11111111 0000 0011111222 12 578999999999999999999999998854
No 366
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=4.6e-10 Score=112.47 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=85.8
Q ss_pred CCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc--------cc
Q 002068 257 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA--------GA 326 (973)
Q Consensus 257 iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~--------g~ 326 (973)
+||.+..++++++.+.+ ....++||+|++||||+.+|++|.+.... .+.+++.+||+.+.. |.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 58999999999987754 55678999999999999999999985422 367999999987631 11
Q ss_pred c---ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEc
Q 002068 327 K---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (973)
Q Consensus 327 ~---~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~a 390 (973)
. +.|... .-..++.. ..+++||||||+.|. .+++..|..+++.+ ++++|++
T Consensus 74 ~~~~~~~~~~-~~~G~l~~----A~~GtL~Ld~I~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 74 EKGAFTGARS-DKKGLLEQ----ANGGTLFLDEIEDLP--------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp CSSSSTTTSS-EBEHHHHH----TTTSEEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred cccccccccc-ccCCceee----ccceEEeecchhhhH--------HHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 0 000000 00122332 346799999999998 66888888888633 7899999
Q ss_pred cCchHHH--hhhccCHHHHccCceEE
Q 002068 391 TTLDEYR--KYIEKDPALERRFQQVY 414 (973)
Q Consensus 391 t~~~~~~--~~~~~d~al~~Rf~~i~ 414 (973)
|+.+... ..-.+.+.|.-|+..+.
T Consensus 141 t~~~l~~~v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 141 TSKDLEELVEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp ESS-HHHHHHTTSS-HHHHHHHTTEE
T ss_pred cCcCHHHHHHcCCChHHHHHHhceEe
Confidence 9976421 11123455555555443
No 367
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=4.3e-09 Score=115.70 Aligned_cols=183 Identities=15% Similarity=0.170 Sum_probs=118.7
Q ss_pred hHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-----------cCCCeEEEEEcccccccccc
Q 002068 261 DDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA-----------LMNRKLISLDMGALIAGAKY 328 (973)
Q Consensus 261 ~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~-----------l~~~~~~~l~~~~~~~g~~~ 328 (973)
....+++...+.+...+| +||+||+|+||+++|..+|+.+.+.+.... ..+-.++.++...-..|.+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 345677777776666666 789999999999999999999977532111 01112333321110011100
Q ss_pred -cchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhhhcc
Q 002068 329 -RGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEK 402 (973)
Q Consensus 329 -~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~~~~ 402 (973)
..-..+.++++.+.+... ++.-|++||++|.|. ..++|.|+..+|.. ++++|.+|+..+ .+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~l 156 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----RL 156 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----hC
Confidence 112244566666655542 335699999999997 66888888899854 778888888776 57
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 403 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 403 d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
-|.++|||+.+.|..|+.++....|.. .+ +++.....++.++. ..|..|..+++
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~--------~~--~~~~~a~~~~~l~~------G~p~~A~~~~~ 210 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLA--------QG--VSERAAQEALDAAR------GHPGLAAQWLR 210 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHH--------cC--CChHHHHHHHHHcC------CCHHHHHHHhc
Confidence 799999999999999999887766542 12 34444445566664 23556665553
No 368
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.08 E-value=1.8e-09 Score=126.71 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=115.0
Q ss_pred CCCCCCCCchHHHHHHHHHhc--cCCCCCceEECCCCCcHHHHHHHHHHHHh-cCCCCcccCCCeEEEEEcccccc----
Q 002068 252 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGALIA---- 324 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~--~~~~~~~LL~GppG~GKT~la~~la~~l~-~~~~p~~l~~~~~~~l~~~~~~~---- 324 (973)
..|++++|.+..++++.+.+. .....++||+|++||||+.+|++|...+. ..+.+....+.+|+.+||+.+..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 468889999999998888764 35567899999999999999999998732 11111122477999999987631
Q ss_pred ----cccccchHHHH----HHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 325 ----GAKYRGEFEDR----LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 325 ----g~~~~g~~e~~----l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
|.. .|.+... -..+|+. ..++.||||||+.|. ...+..|..+++.+
T Consensus 296 seLFG~~-~gaftga~~~~~~Gl~e~----A~gGTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~~~~ 362 (538)
T PRK15424 296 AELFGYE-EGAFTGSRRGGRAGLFEI----AHGGTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQPVPV 362 (538)
T ss_pred HHhcCCc-cccccCccccccCCchhc----cCCCEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCceecc
Confidence 100 0111000 0112222 245699999999998 56777788887644
Q ss_pred CEEEEEccCchHHHhh--hccCHHHHccCceEEecCCCHHHHHHH----HHHHHHHHhhhcCCccCHHHH
Q 002068 384 ELRCIGATTLDEYRKY--IEKDPALERRFQQVYVDQPNVEDTISI----LRGLRERYELHHGVRISDSAL 447 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~--~~~d~al~~Rf~~i~~~~p~~~e~~~i----l~~~~~~~~~~~~v~i~~~~l 447 (973)
++++|++|+.+.-... -.+.+.|..|+..+.+..|+..+|.+- ++.++.++....+..++++++
T Consensus 363 dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 432 (538)
T PRK15424 363 DVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALR 432 (538)
T ss_pred ceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4589999987642110 113356667887778888877666543 344444432223334444443
No 369
>PHA02244 ATPase-like protein
Probab=99.08 E-value=9.1e-10 Score=120.86 Aligned_cols=140 Identities=20% Similarity=0.283 Sum_probs=90.1
Q ss_pred CCCchHHHH----HHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc--c-cccc-cc
Q 002068 257 VIGRDDEIR----RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA--L-IAGA-KY 328 (973)
Q Consensus 257 iiG~~~~i~----~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--~-~~g~-~~ 328 (973)
.+|....+. ++...+ ....+++|+||||||||++|+++|+.+ +.+++.++... + ..|. ..
T Consensus 98 ~ig~sp~~~~~~~ri~r~l--~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~ 165 (383)
T PHA02244 98 KIASNPTFHYETADIAKIV--NANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDA 165 (383)
T ss_pred ccCCCHHHHHHHHHHHHHH--hcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccc
Confidence 456554443 333333 334589999999999999999999997 77888876310 0 0010 01
Q ss_pred cchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc-------------CCCEEEEEccCchH
Q 002068 329 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------------RGELRCIGATTLDE 395 (973)
Q Consensus 329 ~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~-------------~g~i~iI~at~~~~ 395 (973)
.|.+. -..++..+ ..+.+|||||++.+. .+++..|.++++ ..++++|+|+|...
T Consensus 166 ~g~~~--dgpLl~A~---~~GgvLiLDEId~a~--------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~ 232 (383)
T PHA02244 166 NGKFH--ETPFYEAF---KKGGLFFIDEIDASI--------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG 232 (383)
T ss_pred ccccc--chHHHHHh---hcCCEEEEeCcCcCC--------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence 11111 01222222 245699999999887 456666666664 24789999999842
Q ss_pred ------HHhhhccCHHHHccCceEEecCCCHH
Q 002068 396 ------YRKYIEKDPALERRFQQVYVDQPNVE 421 (973)
Q Consensus 396 ------~~~~~~~d~al~~Rf~~i~~~~p~~~ 421 (973)
|.....+++++++||..|.+..|+..
T Consensus 233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~ 264 (383)
T PHA02244 233 KGADHIYVARNKIDGATLDRFAPIEFDYDEKI 264 (383)
T ss_pred cCcccccCCCcccCHHHHhhcEEeeCCCCcHH
Confidence 21124689999999999999999743
No 370
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.07 E-value=1.2e-09 Score=128.50 Aligned_cols=178 Identities=17% Similarity=0.247 Sum_probs=117.4
Q ss_pred CCCCCCCCchHHHHHHHHHhc--cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-----
Q 002068 252 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~--~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~----- 324 (973)
..|++++|.+..++++.+.+. .....++||+|++||||+.+|++|...... .+.+++.+||..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHH
Confidence 568899999999998888764 355678999999999999999999976422 367899999987631
Q ss_pred ---cccccchHHHH----HHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------C
Q 002068 325 ---GAKYRGEFEDR----LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (973)
Q Consensus 325 ---g~~~~g~~e~~----l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~ 384 (973)
|. ..|.+... -..+|+. ..++.||||||+.|. .+.+..|..+++.+ +
T Consensus 282 eLFG~-~~gaftga~~~~~~Gl~e~----A~gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 282 ELFGY-EEGAFTGARRGGRTGLIEA----AHRGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred HhcCC-cccccccccccccccchhh----cCCceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 10 00111100 1112222 235689999999998 56777788787644 3
Q ss_pred EEEEEccCchHHHh--hhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhcCCccCHHHHHH
Q 002068 385 LRCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHGVRISDSALVE 449 (973)
Q Consensus 385 i~iI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~v~i~~~~l~~ 449 (973)
+++|++|+.+.... .-.+.+.|..|+..+.+..|+..+|. .+++.++.++...+++.++++++..
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 58999998764211 11233566668876777777765554 4445566555444455667766654
No 371
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.1e-09 Score=120.51 Aligned_cols=161 Identities=17% Similarity=0.316 Sum_probs=108.7
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~ 730 (973)
..++....+.+.+++...+. ...+||+||+|+||+++|+.+|+.+.+....- .-.|+....=..+. -|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC~~~~--~g~ 72 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG--------HHALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQ--AGN 72 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc--------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHh--cCC
Confidence 45677777888777764321 12689999999999999999999997633110 11233221000000 011
Q ss_pred CCC----------cccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEE
Q 002068 731 PPG----------YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (973)
Q Consensus 731 ~~g----------~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI 796 (973)
.|. .++.+..+.+.+.+. ...+.|++||++|++....+|.||+.||+ ...+++||
T Consensus 73 HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fi 141 (325)
T PRK06871 73 HPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFL 141 (325)
T ss_pred CCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEE
Confidence 111 223333333334443 24457999999999999999999999998 55688999
Q ss_pred EecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 797 ~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
++|+. ...+.|.+++|| ..+.|+|++.+++.+.+...
T Consensus 142 L~t~~------------------------------~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 142 LQADL------------------------------SAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEECC------------------------------hHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 88886 334678899999 88999999999988777653
No 372
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.06 E-value=7.4e-09 Score=115.80 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=107.4
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEc
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiD 355 (973)
.++++|+||+|.|||.|+++++.+..... .+..++.+....+... +.-.....-..-|++-. .- -+|+||
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~~--~v~a~~~~~~~~Fk~~y-~~--dlllID 182 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTND--FVKALRDNEMEKFKEKY-SL--DLLLID 182 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHHH--HHHHHHhhhHHHHHHhh-cc--Ceeeec
Confidence 45567899999999999999999985543 2556777654443210 11110000001111111 11 289999
Q ss_pred cccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHH
Q 002068 356 EIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 356 Ei~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~ 432 (973)
+++.+.+... ......+++..+.+.|+-+++.+...+. ..-.+.|.|++||. .+.+.+|+.+.+..||+...+
T Consensus 183 Diq~l~gk~~--~qeefFh~FN~l~~~~kqIvltsdr~P~--~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 183 DIQFLAGKER--TQEEFFHTFNALLENGKQIVLTSDRPPK--ELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hHhHhcCChh--HHHHHHHHHHHHHhcCCEEEEEcCCCch--hhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 9999975432 2456778888888888744444433332 12246699999996 579999999999999988665
Q ss_pred HHhhhcCCccCHHHHHHHHHhcc
Q 002068 433 RYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 433 ~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
..++.++++++.+++....
T Consensus 259 ----~~~~~i~~ev~~~la~~~~ 277 (408)
T COG0593 259 ----DRGIEIPDEVLEFLAKRLD 277 (408)
T ss_pred ----hcCCCCCHHHHHHHHHHhh
Confidence 4789999999998887654
No 373
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.1e-09 Score=123.01 Aligned_cols=144 Identities=29% Similarity=0.424 Sum_probs=96.2
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC---------------------c
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE---------------------E 708 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~---------------------~ 708 (973)
.++|++.++..+........ +-| ..+||+||||+|||++|.++|+.+++.. .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 46677777777666655321 111 1399999999999999999999997643 2
Q ss_pred ceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC
Q 002068 709 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 784 (973)
Q Consensus 709 ~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~ 784 (973)
.++.++.++..... +.....+.+..... ..+..|++|||+|.++++.++.|+..++.
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 33333333321110 01111111122221 24567999999999999999999999997
Q ss_pred CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCH
Q 002068 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR 854 (973)
Q Consensus 785 g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~ 854 (973)
...++.||+++|. ...+.|.+.+|| ..+.|+|++.
T Consensus 136 ----p~~~~~~il~~n~------------------------------~~~il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 136 ----PPKNTRFILITND------------------------------PSKILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred ----CCCCeEEEEEcCC------------------------------hhhccchhhhcc-eeeecCCchH
Confidence 4468899999995 233556899999 8899998553
No 374
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=2.6e-09 Score=109.93 Aligned_cols=171 Identities=16% Similarity=0.336 Sum_probs=126.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh-------hh--hcCCCCCcccccccchhhHHHH---
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV-------SR--LIGAPPGYVGYEEGGQLTEVVR--- 748 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~-------~~--l~G~~~g~~g~~~~~~l~~~~~--- 748 (973)
|++||||+|+||.+.+.++-+.+||.+.+-..++...+..+..- +. -+--.|...|+.+.-.+.+.++
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 89999999999999999999999998777777777666443210 00 0111244455444333344433
Q ss_pred ---------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccch
Q 002068 749 ---------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETA 819 (973)
Q Consensus 749 ---------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~ 819 (973)
+.++.|++|.|+|++..+.|..|..-||. ..+++.+|+.+|.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns------------------ 166 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS------------------ 166 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecC------------------
Confidence 24568999999999999999999999996 5578999999997
Q ss_pred HHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCC
Q 002068 820 YETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYG 899 (973)
Q Consensus 820 ~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~g 899 (973)
.+++-+++.+|| ..|.++.++.+|+-.++...+.+ . .+.+..+.+..+++.+
T Consensus 167 ------------~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~k-------E--~l~lp~~~l~rIa~kS------ 218 (351)
T KOG2035|consen 167 ------------TSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKK-------E--GLQLPKELLKRIAEKS------ 218 (351)
T ss_pred ------------cccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHH-------h--cccCcHHHHHHHHHHh------
Confidence 233566899999 88999999999999999988854 3 3667788888888853
Q ss_pred ccHHHHHHH
Q 002068 900 ARPVKRVIQ 908 (973)
Q Consensus 900 aR~L~r~i~ 908 (973)
-|.|+|.+-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 245666553
No 375
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.05 E-value=3.2e-09 Score=130.75 Aligned_cols=189 Identities=19% Similarity=0.328 Sum_probs=122.7
Q ss_pred HHHHHhc--CCCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 245 LTAMASA--GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 245 l~~~~~~--~~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
+++.... ..|++++|++..++.+++.+.+ ....++||+||+|||||++|++|+..... .+.+++.+||.
T Consensus 364 lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~ 436 (686)
T PRK15429 364 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCA 436 (686)
T ss_pred HHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecc
Confidence 4444443 4688999999999998876643 44568999999999999999999987522 36789999998
Q ss_pred ccccc--------c---cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------
Q 002068 321 ALIAG--------A---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ 383 (973)
Q Consensus 321 ~~~~g--------~---~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------ 383 (973)
.+..+ . .+.|....+. ..++ . ..+++||||||+.+. .+.+..|..+++.+
T Consensus 437 ~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le---~-a~~GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 437 AMPAGLLESDLFGHERGAFTGASAQRI-GRFE---L-ADKSSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred cCChhHhhhhhcCcccccccccccchh-hHHH---h-cCCCeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCC
Confidence 76321 0 0111111111 1222 2 245799999999997 55677777776532
Q ss_pred -------CEEEEEccCchHHH--hhhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhcC---CccCHHHH
Q 002068 384 -------ELRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSAL 447 (973)
Q Consensus 384 -------~i~iI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---v~i~~~~l 447 (973)
++++|++|+.+... ..-.+...+..|+..+.|..|+..+|.+ +++.++.++...++ ..++++++
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 57899999876421 1113446677788877788887766654 44555555544333 24677777
Q ss_pred HHHHHh
Q 002068 448 VEAAIL 453 (973)
Q Consensus 448 ~~l~~~ 453 (973)
..+..+
T Consensus 584 ~~L~~y 589 (686)
T PRK15429 584 RTLSNM 589 (686)
T ss_pred HHHHhC
Confidence 666544
No 376
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=6.8e-10 Score=123.21 Aligned_cols=139 Identities=18% Similarity=0.281 Sum_probs=94.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCC-----------cccccccchhhHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-----------YVGYEEGGQLTEVVRR 749 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g-----------~~g~~~~~~l~~~~~~ 749 (973)
.+||+||+|+|||++|+.+|+.+.+.... -.-.|+....=..+. -|..|. .++.+..+.+.+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~--~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLR--AGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHh--cCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 69999999999999999999999753211 011222221000000 011111 1222333334444443
Q ss_pred ----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHH
Q 002068 750 ----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQ 825 (973)
Q Consensus 750 ----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~ 825 (973)
..+.|++||++|+++...+|.||+.||+ ...+++||++|+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~------------------------ 145 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQ------------------------ 145 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECC------------------------
Confidence 4467999999999999999999999997 3457888888887
Q ss_pred HHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 826 RVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 826 ~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...+.|.+++|| ..+.|+|++.+++.+.+...
T Consensus 146 ------~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 146 ------PSRLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred ------hhhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 334678999999 78999999999988777653
No 377
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.3e-09 Score=119.76 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=106.4
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc--cc--hhhhh
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY--ME--KHAVS 725 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~--~~--~~~~~ 725 (973)
-..++..+++.+..++...+. ...+||+||+|+||+++|..+|+.+.+.+..-. -+|... .. .|.--
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl--------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~-~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL--------GHGLLICGPEGLGKRAVALALAEHVLASGPDPA-AAQRTRQLIAAGTHPDL 75 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCC-CcchHHHHHhcCCCCCE
Confidence 356788888888877764221 125999999999999999999999976431100 011110 00 01001
Q ss_pred hhcCCCCCc--------ccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 726 RLIGAPPGY--------VGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 726 ~l~G~~~g~--------~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
.++...|.. ++.+....+.+.+.. ..+.|++||++|+++....|.||+.||+ ...++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGR 144 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCC
Confidence 111101111 111111223333332 3457999999999999999999999998 44688
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
+||++|+. ...+-|.+++|| ..+.|++++.+++.+.+..
T Consensus 145 ~fiL~~~~------------------------------~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 145 YLWLISAQ------------------------------PARLPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred eEEEEECC------------------------------hhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 88888886 334678899999 8899999999888777653
No 378
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=2.4e-10 Score=111.54 Aligned_cols=111 Identities=24% Similarity=0.386 Sum_probs=71.7
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHH-------HHHHHHHHHHhCCCe
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR-------LKAVLKEVTESEGQI 350 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~-------l~~~~~~~~~~~~~~ 350 (973)
|+||+||||||||++|+.+|+.+ +.+++.+.++.........|...-. -..+...+ ..++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 58999999999999999999999 7888888876643221111111100 00001111 1467
Q ss_pred EEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------------CEEEEEccCchHHHhhhccCHHHHcc
Q 002068 351 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------------ELRCIGATTLDEYRKYIEKDPALERR 409 (973)
Q Consensus 351 ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------------~i~iI~at~~~~~~~~~~~d~al~~R 409 (973)
|+||||++... .++.+.|..+++.+ .+++|+|+|+.. .....++++|++|
T Consensus 68 il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 99999999876 45667777776422 289999999887 3445789999999
Q ss_pred C
Q 002068 410 F 410 (973)
Q Consensus 410 f 410 (973)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 379
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.03 E-value=1.7e-09 Score=132.50 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=122.5
Q ss_pred CCCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccccc
Q 002068 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 329 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~ 329 (973)
..|+.++|.+..++++++.+.+ ....++||+|++||||+++|++|+..... .+.+++.+||..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~---- 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDE---- 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChH----
Confidence 3689999999999988887654 44567999999999999999999987522 2578999999876310
Q ss_pred chHHHHHHHHHHHH-----------HHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CE
Q 002068 330 GEFEDRLKAVLKEV-----------TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (973)
Q Consensus 330 g~~e~~l~~~~~~~-----------~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i 385 (973)
.+ -..+|... .....+++||||||+.|. .+.+..|..+++.+ ++
T Consensus 391 -~~---~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 391 -AL---AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred -HH---HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 00 01122110 011246799999999998 56777888887654 57
Q ss_pred EEEEccCchHHHh--hhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhc--CCccCHHHHHHHHHhc
Q 002068 386 RCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHH--GVRISDSALVEAAILS 454 (973)
Q Consensus 386 ~iI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~--~v~i~~~~l~~l~~~s 454 (973)
++|++|+.+.... .-.+.+.|.-|+..+.|..|+..+|. .+++.++.++...+ .+.++++++..+..+.
T Consensus 459 riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 459 RVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred EEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 8999998764211 11234667778887788888766654 34455555544332 3567888887776654
No 380
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.2e-08 Score=113.70 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------cCCCeEEEEEccccccc
Q 002068 261 DDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------LMNRKLISLDMGALIAG 325 (973)
Q Consensus 261 ~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~~~~l~~~~~~~g 325 (973)
+..-+++++.+.+.+.+| .||+||+|+||+++|..+|+.+.+.+.... ..+-.++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 345667777776655444 579999999999999999999976421110 1122333332110 0
Q ss_pred ccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhh
Q 002068 326 AKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYI 400 (973)
Q Consensus 326 ~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~ 400 (973)
.. .-..+.++.+.+.+... ++.-|++||++|.|. ..++|.|+..||+ ++..+|.+|+..+
T Consensus 85 ~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 KS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred cc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 00 11234566666655532 345699999999998 6688999999984 4788888888776
Q ss_pred ccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 401 EKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 401 ~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
.+-|.++|||+.+.|+.|+.++....|.. ...++++....++.++.+ .|.+|.++++
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G------~~~~Al~l~~ 206 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAG------APGAALALLQ 206 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCC------CHHHHHHHhc
Confidence 68899999999999999999887665531 123566666667777752 3556666654
No 381
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.01 E-value=2.3e-09 Score=126.92 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=130.3
Q ss_pred ceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccc--hhhHHHHhCCCeEEE
Q 002068 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVIL 756 (973)
Q Consensus 679 ~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~--~l~~~~~~~~~~Vl~ 756 (973)
+|.+++.|+.||||+++++.++..+-. ..||+.+..+ -+...|+|.-.=...-..|. .-.+.+..++++|||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 457999999999999999999999832 2466555443 23456676420000000000 123566788899999
Q ss_pred EccccccCHHHHHHHHHhhcCCeEecCC-CcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhc
Q 002068 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 834 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 834 (973)
|||+..+++.+++.|++.|++|.++..+ |..+.++ ++++|+|-|.. + ....
T Consensus 99 lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~-----~----------------------~~~~ 151 (584)
T PRK13406 99 LAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA-----E----------------------EDER 151 (584)
T ss_pred ecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh-----h----------------------cccC
Confidence 9999999999999999999999998865 7777776 77888874431 0 0245
Q ss_pred cChhhhcccceEEEcCCCCHHHHHHH--HHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCC-CccHHHHHHH
Q 002068 835 FRPEFMNRVDEYIVFQPLDRDQISSI--VRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNY-GARPVKRVIQ 908 (973)
Q Consensus 835 f~p~ll~R~d~~i~f~~l~~~~l~~I--~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~r~i~ 908 (973)
+++.+++||+..|.+.+++..+.... ....+....+++. ++.++++.+++++..+..... |.|....+++
T Consensus 152 L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llr 224 (584)
T PRK13406 152 APAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCAAAAALGIASLRAPLLALR 224 (584)
T ss_pred CCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 78899999999999999887655321 1122323333331 578899999998875443332 4565544443
No 382
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.01 E-value=1.1e-08 Score=121.61 Aligned_cols=182 Identities=20% Similarity=0.268 Sum_probs=122.2
Q ss_pred CCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc-----
Q 002068 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG----- 325 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g----- 325 (973)
.+..+||++..++++.+.+.+ ....++||+|++||||+.+|++|+..... .+.+++.+||..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChHHHHHH
Confidence 567899999999998887754 45678999999999999999999987522 2678999999876310
Q ss_pred ---cc---ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEE
Q 002068 326 ---AK---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (973)
Q Consensus 326 ---~~---~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~ 386 (973)
.. +.|....+ ...+.. ..++.||||||+.|. .+.+..|..+++.+ +++
T Consensus 258 lfG~~~g~~~ga~~~~-~g~~~~----a~gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 258 LFGHVKGAFTGAISNR-SGKFEL----ADGGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred hcCccccccCCCcccC-Ccchhh----cCCCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 00 00100000 011221 245689999999998 55777777777543 569
Q ss_pred EEEccCchHHHh--hhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhc---CCccCHHHHHHHHHhc
Q 002068 387 CIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHH---GVRISDSALVEAAILS 454 (973)
Q Consensus 387 iI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~---~v~i~~~~l~~l~~~s 454 (973)
+|++|+.+.... .-.+.+.|..|+..+.|..|+..+|. .+++.++.++...+ .+.++++++..+..+.
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 401 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD 401 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 999998764211 11355777788877777777655544 44566666655433 3678888888776654
No 383
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.9e-09 Score=119.59 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=93.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc------h-hhhhhhcCCC----------------------
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------K-HAVSRLIGAP---------------------- 731 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~------~-~~~~~l~G~~---------------------- 731 (973)
.+||+||+|+||+++|+.+|+.+.+....-..-.|+.... . |....++...
T Consensus 23 a~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T PRK06964 23 ALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEGG 102 (342)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhccc
Confidence 6999999999999999999999966321000012222110 0 0000001000
Q ss_pred ------CCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCC
Q 002068 732 ------PGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 732 ------~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 801 (973)
...++.++.+.+.+.+. .+.+.|++||++|+++....|.||+.||+ ...+++||++|+.
T Consensus 103 ~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~~ 171 (342)
T PRK06964 103 KKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSAR 171 (342)
T ss_pred ccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEECC
Confidence 01122222222333333 24467999999999999999999999997 4568888888876
Q ss_pred ChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
...+.|.+++|| ..|.|+|++.+++.+.+..
T Consensus 172 ------------------------------~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 172 ------------------------------IDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ------------------------------hhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 344778899999 8999999999998887764
No 384
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=4.2e-09 Score=115.66 Aligned_cols=159 Identities=12% Similarity=0.192 Sum_probs=108.7
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~ 730 (973)
..++.+..+.+..++...+ -...+||+||.|+||+++|+.+|+.+.+.+..- -.|+....-..+. -|.
T Consensus 5 yPWl~~~~~~l~~~~~~~r--------l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~--~g~ 72 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGR--------IPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQ--SGN 72 (319)
T ss_pred cccHHHHHHHHHHHHHcCC--------cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHH--cCC
Confidence 4567777888877776422 223699999999999999999999997643211 1233321100000 111
Q ss_pred CCC-----------cccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 731 PPG-----------YVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 731 ~~g-----------~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
.|. .++.+..+.+.+.+.. ..+.|++||++|+++....|.||+.||+ ...+++|
T Consensus 73 HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~f 141 (319)
T PRK06090 73 HPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLF 141 (319)
T ss_pred CCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEE
Confidence 111 1222222333334433 3468999999999999999999999998 5568899
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
|++|+. ...+-|.+++|| ..+.|++++.+++.+.+..
T Consensus 142 iL~t~~------------------------------~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 142 LLVTHN------------------------------QKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEECC------------------------------hhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 998876 344677899999 7899999999988877764
No 385
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.00 E-value=4.5e-09 Score=126.04 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=79.6
Q ss_pred CCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------------------CEEEEEccCchHHHhhhccCH
Q 002068 348 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIGATTLDEYRKYIEKDP 404 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------------------~i~iI~at~~~~~~~~~~~d~ 404 (973)
.+++|||||++.|. ...+..|+.+++.+ ++++|++++...+ ..++|
T Consensus 217 ngGtL~Ldei~~L~--------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l---~~l~~ 285 (608)
T TIGR00764 217 HKGVLYIDEIKTMP--------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL---EGMHP 285 (608)
T ss_pred CCCEEEEEChHhCC--------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH---hhcCH
Confidence 35799999999887 45677777777432 5788999998754 36899
Q ss_pred HHHccCc---e-EEecC--C-CHHHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHhcccccCCCCC----chHHHHHHH
Q 002068 405 ALERRFQ---Q-VYVDQ--P-NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGRFL----PDKAIDLVD 472 (973)
Q Consensus 405 al~~Rf~---~-i~~~~--p-~~~e~~~il~~~~~~~~~~-~~v~i~~~~l~~l~~~s~~~i~~r~~----p~~a~~lld 472 (973)
.|++||. . +.|+. | +.+.+.++++.+...+... .-..++++++..+.+.+.|...++.. ..+..+++.
T Consensus 286 ~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 286 ALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 9999997 2 33332 3 5666666666666554433 22368999999998887766554443 345556666
Q ss_pred HHHhh
Q 002068 473 EAAAK 477 (973)
Q Consensus 473 ~a~~~ 477 (973)
.|...
T Consensus 366 ~A~~i 370 (608)
T TIGR00764 366 AAGDI 370 (608)
T ss_pred HHHHH
Confidence 66433
No 386
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=9.3e-10 Score=117.09 Aligned_cols=198 Identities=15% Similarity=0.253 Sum_probs=107.5
Q ss_pred CCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCc-ccCCCeEEEE-Ecccc------------
Q 002068 257 VIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ-ALMNRKLISL-DMGAL------------ 322 (973)
Q Consensus 257 iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~-~l~~~~~~~l-~~~~~------------ 322 (973)
++||+.+++.+.+.+.+.....++++||.|+|||+|++.+.+.+...+... .......... .....
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999998877678899999999999999999999873321100 0000000000 00000
Q ss_pred -c----ccc-------cccchHHHHHHHHHHHHHHhCCCeEEEEccccccc-cCCCCC-chhhHHHHHhhhhcCCCEEEE
Q 002068 323 -I----AGA-------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV-GAGATN-GAMDAGNLLKPMLGRGELRCI 388 (973)
Q Consensus 323 -~----~g~-------~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~-~~~~~~-~~~~~~~~L~~~l~~g~i~iI 388 (973)
. .+. .........+..+++.+...+.++||+|||++.+. ...... -.....+++.......++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 160 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV 160 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE
Confidence 0 000 01123455567777777765556999999999998 222111 112233334333345667666
Q ss_pred EccCchHHH-hhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 389 GATTLDEYR-KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 389 ~at~~~~~~-~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
.+++...+. .+......+..|+..+.+++.+.++..++++...... .++.++++.++.+..++.++
T Consensus 161 ~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 161 ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 666655443 3344556677888889999999999999988766532 12234899999999888653
No 387
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.99 E-value=4.5e-09 Score=124.75 Aligned_cols=183 Identities=15% Similarity=0.241 Sum_probs=120.3
Q ss_pred cCCCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc----
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA---- 324 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~---- 324 (973)
...|+.+||.+..++++++.+.+ ....+++|+|++||||+++|+++...... .+.+++.+||+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHHH
Confidence 45799999999999988887643 45667999999999999999998876422 256899999987631
Q ss_pred ----ccc---ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------C
Q 002068 325 ----GAK---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (973)
Q Consensus 325 ----g~~---~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~ 384 (973)
|.. +.|..+. -..+|+. ..++.||||||+.|. ...+..|..+++.+ +
T Consensus 273 ~elFG~~~~~~~~~~~~-~~g~~e~----a~~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 273 SELFGHAPGAYPNALEG-KKGFFEQ----ANGGSVLLDEIGEMS--------PRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHhcCCCCCCcCCcccC-CCChhhh----cCCCEEEEeChhhCC--------HHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 100 0111000 0112222 235689999999997 45666777777543 5
Q ss_pred EEEEEccCchHHH--hhhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhcC---CccCHHHHHHHHHh
Q 002068 385 LRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG---VRISDSALVEAAIL 453 (973)
Q Consensus 385 i~iI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---v~i~~~~l~~l~~~ 453 (973)
+++|++|+.+... .--.+.+.|..|+..+.+..|+..+|. .+++.++.++...++ ..++++++..+..+
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC
Confidence 7899988776421 111245778889877777777665554 344555665544443 36788887766544
No 388
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1e-09 Score=121.57 Aligned_cols=192 Identities=19% Similarity=0.362 Sum_probs=116.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-----hC---CC
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-----RR---PY 752 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-----~~---~~ 752 (973)
.+||+||||||||.+||.|.+.|...+. -.+|..++.++ ++|.+...+ +.++..+. .. .-
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAreP--KIVNGPeIL~K-----YVGeSE~Nv-----R~LFaDAEeE~r~~g~~SgL 325 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREP--KIVNGPEILNK-----YVGESEENV-----RKLFADAEEEQRRLGANSGL 325 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCC--cccCcHHHHHH-----hhcccHHHH-----HHHHHhHHHHHHhhCccCCc
Confidence 5999999999999999999999964332 33566665443 333332211 12222221 11 12
Q ss_pred eEEEEcccccc-------------CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccch
Q 002068 753 AVILFDEIEKA-------------HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETA 819 (973)
Q Consensus 753 ~Vl~lDEid~l-------------~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~ 819 (973)
-||+|||||.+ +..|.|+||.-||.- -.+.|.++|..||.
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV---------eqLNNILVIGMTNR------------------ 378 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV---------EQLNNILVIGMTNR------------------ 378 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH---------HhhhcEEEEeccCc------------------
Confidence 49999999953 467999999999851 14578999999997
Q ss_pred HHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCC
Q 002068 820 YETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNY 898 (973)
Q Consensus 820 ~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~ 898 (973)
.+- +. ...++| +|+...+.+.-+++.-..+|++.+-+++. ..+ .+++++ ++.|+. ...||
T Consensus 379 ~Dl----ID---EALLRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rMr----e~~---~l~~dVdl~elA~--lTKNf 439 (744)
T KOG0741|consen 379 KDL----ID---EALLRP---GRLEVQMEISLPDEKGRLQILKIHTKRMR----ENN---KLSADVDLKELAA--LTKNF 439 (744)
T ss_pred hhh----HH---HHhcCC---CceEEEEEEeCCCccCceEEEEhhhhhhh----hcC---CCCCCcCHHHHHH--HhcCC
Confidence 111 11 112344 89977888888888877777776554432 232 122222 234444 24567
Q ss_pred CccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 899 GARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 899 gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
+..+|.-.+..+..-++-+ .+..|.+..++..
T Consensus 440 SGAEleglVksA~S~A~nR-----~vk~~~~~~~~~~ 471 (744)
T KOG0741|consen 440 SGAELEGLVKSAQSFAMNR-----HVKAGGKVEVDPV 471 (744)
T ss_pred chhHHHHHHHHHHHHHHHh-----hhccCcceecCch
Confidence 6677777776655444443 3444555555443
No 389
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=3.8e-09 Score=117.57 Aligned_cols=162 Identities=13% Similarity=0.141 Sum_probs=108.4
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc------h-h-
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------K-H- 722 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~------~-~- 722 (973)
..++....+.+.+.+...+ ....+||+||+|+||+++|.++|+.+.+.... -.-.|+.... . |
T Consensus 4 yPWl~~~~~~l~~~~~~~r--------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~-~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGR--------GHHALLIQALPGMGDDALIYALSRWLMCQQPQ-GHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred CCCChHHHHHHHHHHHcCC--------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCC
Confidence 4577788888888776422 22369999999999999999999999763211 0112332210 0 0
Q ss_pred hhhhhcCCCC-CcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEE
Q 002068 723 AVSRLIGAPP-GYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (973)
Q Consensus 723 ~~~~l~G~~~-g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 797 (973)
++..+..... ..++.++.+.+.+.+. ...+.|++||++|++.....|.||+.||+ ...+++||+
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFL 143 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 0111111000 1123333333444443 24567999999999999999999999998 456888888
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
+|+. ...+.|.+++|| ..+.|++++.+++.+.+..
T Consensus 144 ~t~~------------------------------~~~lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 144 ACRE------------------------------PARLLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EECC------------------------------hhhChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 8876 344678899999 6799999999988877653
No 390
>PRK06620 hypothetical protein; Validated
Probab=98.96 E-value=5.9e-09 Score=109.00 Aligned_cols=144 Identities=17% Similarity=0.318 Sum_probs=93.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||+|++++++.. +. ..+...... .+..+ ...+|+||||
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~---~~--~~~~~~~~~------------------------~~~~~--~~d~lliDdi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS---NA--YIIKDIFFN------------------------EEILE--KYNAFIIEDI 94 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc---CC--EEcchhhhc------------------------hhHHh--cCCEEEEecc
Confidence 69999999999999999988765 21 111111000 01111 2259999999
Q ss_pred cccCH-HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhh
Q 002068 761 EKAHS-DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 839 (973)
Q Consensus 761 d~l~~-~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~l 839 (973)
|.+.. .++..+..+.+.|. .+|+|++..+.. .. + |+|
T Consensus 95 ~~~~~~~lf~l~N~~~e~g~--------------~ilits~~~p~~--------------------------l~-l-~~L 132 (214)
T PRK06620 95 ENWQEPALLHIFNIINEKQK--------------YLLLTSSDKSRN--------------------------FT-L-PDL 132 (214)
T ss_pred ccchHHHHHHHHHHHHhcCC--------------EEEEEcCCCccc--------------------------cc-h-HHH
Confidence 97643 23333333335432 355555542211 11 4 678
Q ss_pred hcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 840 MNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 840 l~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
.+|+. .++.+.+++.+++..++.+.+.. . .+.+++++++||++. .+.. +|.+...++.
T Consensus 133 ~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-------~--~l~l~~ev~~~L~~~-~~~d--~r~l~~~l~~ 192 (214)
T PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSI-------S--SVTISRQIIDFLLVN-LPRE--YSKIIEILEN 192 (214)
T ss_pred HHHHhCCceEeeCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHH-ccCC--HHHHHHHHHH
Confidence 89994 28999999999998888876643 3 477999999999995 3333 7888877776
No 391
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.96 E-value=2.7e-08 Score=100.79 Aligned_cols=193 Identities=22% Similarity=0.309 Sum_probs=133.6
Q ss_pred CCCCCCchHHHHHHH----HHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccccc
Q 002068 254 LDPVIGRDDEIRRCI----QILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 329 (973)
Q Consensus 254 l~~iiG~~~~i~~li----~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~ 329 (973)
+..++|-+..-+.++ +.+...+.+|+||+|--||||++|++++...+... +.++++++-.++.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~------ 125 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA------ 125 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh------
Confidence 345788666544444 45566777999999999999999999999998444 6679999877664
Q ss_pred chHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------CEEEEEccCchHHHh-hh--
Q 002068 330 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ELRCIGATTLDEYRK-YI-- 400 (973)
Q Consensus 330 g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------~i~iI~at~~~~~~~-~~-- 400 (973)
.+-.+++.++....+.|||+|++- +..+ .+....||.+|+-| +|.+-+|+|...... ++
T Consensus 126 -----~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~d 193 (287)
T COG2607 126 -----TLPDLVELLRARPEKFILFCDDLS--FEEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKD 193 (287)
T ss_pred -----hHHHHHHHHhcCCceEEEEecCCC--CCCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhh
Confidence 366788888888889999999984 2222 45677899998743 788888887543211 01
Q ss_pred ------ccC--------HHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHH-HHHhcccccCCCCCc
Q 002068 401 ------EKD--------PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVE-AAILSDRYISGRFLP 464 (973)
Q Consensus 401 ------~~d--------~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~-l~~~s~~~i~~r~~p 464 (973)
+++ -+|-.||. .+.|.+++.++-++|++++.+ +.++.++++.++. +...+.. .+....
T Consensus 194 n~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~----~~~l~~~~e~l~~eAl~WAt~--rg~RSG 267 (287)
T COG2607 194 NEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK----HFGLDISDEELHAEALQWATT--RGGRSG 267 (287)
T ss_pred CCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHh--cCCCcc
Confidence 111 23556997 689999999999999998887 4678887766654 3333321 122234
Q ss_pred hHHHHHHHHHHhh
Q 002068 465 DKAIDLVDEAAAK 477 (973)
Q Consensus 465 ~~a~~lld~a~~~ 477 (973)
.-|...++....+
T Consensus 268 R~A~QF~~~~~g~ 280 (287)
T COG2607 268 RVAWQFIRDLAGR 280 (287)
T ss_pred HhHHHHHHHHHhh
Confidence 4566666655544
No 392
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.4e-09 Score=121.28 Aligned_cols=147 Identities=23% Similarity=0.328 Sum_probs=95.0
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE-------------
Q 002068 252 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD------------- 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~------------- 318 (973)
..|.+|+||+...+.+.-. ....+|+||+||||||||++|+.+...|..-..++.+.-..+++++
T Consensus 176 ~D~~DV~GQ~~AKrAleiA--AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIA--AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred cchhhhcCcHHHHHHHHHH--HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 3678999997776665553 4566899999999999999999998877444333332222222221
Q ss_pred ----------cccccccccc--cchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---
Q 002068 319 ----------MGALIAGAKY--RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--- 383 (973)
Q Consensus 319 ----------~~~~~~g~~~--~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--- 383 (973)
+.++++|... .|+ +.. ..++||||||+-.+- ..+.+.|+.-||+|
T Consensus 254 PFr~PHHsaS~~aLvGGG~~p~PGe-----------IsL-AH~GVLFLDElpef~--------~~iLe~LR~PLE~g~i~ 313 (490)
T COG0606 254 PFRAPHHSASLAALVGGGGVPRPGE-----------ISL-AHNGVLFLDELPEFK--------RSILEALREPLENGKII 313 (490)
T ss_pred CccCCCccchHHHHhCCCCCCCCCc-----------eee-ecCCEEEeeccchhh--------HHHHHHHhCccccCcEE
Confidence 2222222110 011 111 235799999998775 56889999999877
Q ss_pred ------------CEEEEEccCchH--------------------HHhhhccCHHHHccCc-eEEecCCCHHH
Q 002068 384 ------------ELRCIGATTLDE--------------------YRKYIEKDPALERRFQ-QVYVDQPNVED 422 (973)
Q Consensus 384 ------------~i~iI~at~~~~--------------------~~~~~~~d~al~~Rf~-~i~~~~p~~~e 422 (973)
++.+|++||+.. |.+ ++...|++||+ .|.++.++..+
T Consensus 314 IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~--klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 314 ISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLN--KLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred EEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHH--HhhHHHHhhhhheecccCCCHHH
Confidence 446788888542 322 45688999998 67877776433
No 393
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2.8e-08 Score=109.47 Aligned_cols=148 Identities=15% Similarity=0.190 Sum_probs=102.8
Q ss_pred HHHHHHHHhccCCCC-CceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------cCCCeEEEEEccccccccc
Q 002068 263 EIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------LMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 263 ~i~~li~~l~~~~~~-~~LL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~~~~l~~~~~~~g~~ 327 (973)
.-+.+.+.+.+...+ ..||+||+|+||+++|+.+|+.+.+.+.... ..+-.++.+... .| +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~-~ 85 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN-K 85 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC-C
Confidence 445566666565544 4579999999999999999999977432110 011224434211 11 1
Q ss_pred ccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhcc
Q 002068 328 YRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 402 (973)
Q Consensus 328 ~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~ 402 (973)
. -..+.++++.+.+... ++.-|++||++|.|. ..++|.|+..+|+ +.+.+|.+|+..+ .+
T Consensus 86 ~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~l 150 (325)
T PRK06871 86 D--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA-----AL 150 (325)
T ss_pred C--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----hC
Confidence 1 1234566666665532 345699999999998 5688999999984 4788888887776 68
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHHH
Q 002068 403 DPALERRFQQVYVDQPNVEDTISILRG 429 (973)
Q Consensus 403 d~al~~Rf~~i~~~~p~~~e~~~il~~ 429 (973)
-|.++|||+.+.|.+|+.++..+.|..
T Consensus 151 lpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 151 LPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred chHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 899999999999999999998776654
No 394
>PRK09087 hypothetical protein; Validated
Probab=98.95 E-value=1.1e-08 Score=107.93 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=97.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
.++|+||+|+|||+|++++++.. ...+++...+.. .....+. .++|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~~~~~---------------------~~~~~~~---~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-----DALLIHPNEIGS---------------------DAANAAA---EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-----CCEEecHHHcch---------------------HHHHhhh---cCeEEEECC
Confidence 59999999999999999988764 123444432211 1111111 248999999
Q ss_pred cccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh
Q 002068 761 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 840 (973)
Q Consensus 761 d~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll 840 (973)
+.+.. .+..|+.+++.-. -....+|+|++..+..+ ..+.|+|.
T Consensus 97 ~~~~~-~~~~lf~l~n~~~----------~~g~~ilits~~~p~~~--------------------------~~~~~dL~ 139 (226)
T PRK09087 97 DAGGF-DETGLFHLINSVR----------QAGTSLLMTSRLWPSSW--------------------------NVKLPDLK 139 (226)
T ss_pred CCCCC-CHHHHHHHHHHHH----------hCCCeEEEECCCChHHh--------------------------ccccccHH
Confidence 98742 2444555554200 01234677777533221 12357899
Q ss_pred cccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 841 NRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 841 ~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
+||. .++.+.+++.+++..|+++.+.. . .+.+++++++||++. ++.. .|.+...+.+
T Consensus 140 SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-------~--~~~l~~ev~~~La~~-~~r~--~~~l~~~l~~ 198 (226)
T PRK09087 140 SRLKAATVVEIGEPDDALLSQVIFKLFAD-------R--QLYVDPHVVYYLVSR-MERS--LFAAQTIVDR 198 (226)
T ss_pred HHHhCCceeecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHH-hhhh--HHHHHHHHHH
Confidence 9995 58999999999999999988854 2 478999999999995 3332 4555555544
No 395
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.94 E-value=1.1e-08 Score=112.60 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=67.7
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEccCchHHHhh--hccCHHHHccCceE
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDEYRKY--IEKDPALERRFQQV 413 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~at~~~~~~~~--~~~d~al~~Rf~~i 413 (973)
.+|+-|+|+.... .+..+-|+.+++.+ +.++|+++|..+|..+ -+...+|++||..|
T Consensus 237 rGi~~f~Ei~K~~--------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i 308 (361)
T smart00763 237 RGILEFVEMFKAD--------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKV 308 (361)
T ss_pred CceEEEeehhcCC--------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEE
Confidence 3577777776654 56677777777644 3468999999999765 35679999999999
Q ss_pred EecCC-CHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhc
Q 002068 414 YVDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (973)
Q Consensus 414 ~~~~p-~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s 454 (973)
.++.| +.++-.+|.+..+..-. ..++.+.+.+++.++.++
T Consensus 309 ~vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~a 349 (361)
T smart00763 309 KVPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALFS 349 (361)
T ss_pred eCCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHHH
Confidence 99998 67777888877765311 124556666666555544
No 396
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.6e-08 Score=112.13 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=101.0
Q ss_pred HHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCC-Ccc--------------cCCCeEEEEEccccc-----
Q 002068 264 IRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDV-PQA--------------LMNRKLISLDMGALI----- 323 (973)
Q Consensus 264 i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~-p~~--------------l~~~~~~~l~~~~~~----- 323 (973)
-++++.. ..+-++.+||+||+|+||+++|+.+|+.+.+.+. +.. ..+-.++.+......
T Consensus 10 ~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~ 88 (342)
T PRK06964 10 WNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPG 88 (342)
T ss_pred HHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccc
Confidence 3444443 3455566789999999999999999999977541 100 111223333221100
Q ss_pred ------------cccc---c-cchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 324 ------------AGAK---Y-RGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 324 ------------~g~~---~-~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.|.+ . ..-..+.++.+.+.+... ++.-|++||++|.|. ..+.|.|+..+|+
T Consensus 89 ~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp 160 (342)
T PRK06964 89 AADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------VAAANALLKTLEEPP 160 (342)
T ss_pred cccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------HHHHHHHHHHhcCCC
Confidence 0000 0 011234566666655432 345699999999997 5688888888884
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHH
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 428 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~ 428 (973)
.++++|.+|+..+ .+.|.++|||+.+.|++|+.++..+.|.
T Consensus 161 ~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 161 PGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred cCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 4788888888877 6889999999999999999998877764
No 397
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=1.2e-07 Score=103.57 Aligned_cols=181 Identities=19% Similarity=0.209 Sum_probs=105.9
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE-E--cc--cc------cccccccch----HHHHHHH
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL-D--MG--AL------IAGAKYRGE----FEDRLKA 338 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l-~--~~--~~------~~g~~~~g~----~e~~l~~ 338 (973)
.....++|+||+|+||||+++.++..+..+.+ .+..+ + .+ .+ .-|....+. ....+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-------~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERV-------VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-------EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 34456889999999999999999988743221 11111 1 00 00 011111121 1122333
Q ss_pred HHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc----CC-CEEEEEccCchHHHhhhcc--CHHHHccCc
Q 002068 339 VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RG-ELRCIGATTLDEYRKYIEK--DPALERRFQ 411 (973)
Q Consensus 339 ~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~----~g-~i~iI~at~~~~~~~~~~~--d~al~~Rf~ 411 (973)
.+......+.+.+|+|||+|.+.. +..+.|+.+.+ .+ .+.++.++++. +...+.. ...+.+|+.
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTP--------ELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRII 184 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCH--------HHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhhee
Confidence 333333345678999999999862 23344443332 22 34455555443 3332321 235777875
Q ss_pred -eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHh
Q 002068 412 -QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (973)
Q Consensus 412 -~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~ 476 (973)
.+.+++.+.++..+++...+...+...+..+++++++.+.+.|.++ |.....+.+.+..
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~ 244 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLL 244 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHH
Confidence 6889999999999999888775544445678999999999999754 4344445555443
No 398
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.92 E-value=1.2e-10 Score=108.13 Aligned_cols=108 Identities=25% Similarity=0.306 Sum_probs=59.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-----cccc-c---chHHHHHHHHHHHHHHhCC
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-----GAKY-R---GEFEDRLKAVLKEVTESEG 348 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-----g~~~-~---g~~e~~l~~~~~~~~~~~~ 348 (973)
|+||.|+||+|||++|+++|+.+ +..+.++.+..-.. |..+ . +.++-.-..+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT---------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh--------
Confidence 68999999999999999999998 77787777642211 1110 0 00000000000
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEccCchHHHhhhccCHHHHccCc
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDEYRKYIEKDPALERRFQ 411 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~at~~~~~~~~~~~d~al~~Rf~ 411 (973)
..|+++|||.+.. ...+..|+.+++++ .+.+|+|.|+.++...+.++.++.+||-
T Consensus 63 ~~ill~DEiNrap--------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAP--------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred hceeeecccccCC--------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 2399999999987 44677788877644 4678999999888888899999999993
No 399
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.1e-08 Score=120.88 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=151.6
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHHHccCCCCC----CCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 642 HLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPH----RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 642 ~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~----~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.+...+...|.|.+.++++|.-++-..-. ...+. |.--|+||+|.||||||.|-+.+++.+. .. ++.....
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgGv~-k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP---r~-vytsgkg 353 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGGVK-KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP---RG-VYTSGKG 353 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCCCc-ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC---ce-EEEcccc
Confidence 44556678899999988888666532111 00111 1113899999999999999999999882 21 2222211
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEec-cCEEE
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTVI 795 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~-~~~ii 795 (973)
-+.........-.+. .|. --.-.+++..+.+||++|||+|+++......|..+||.++++.+. |-...+ .+|-|
T Consensus 354 ss~~GLTAav~rd~~--tge--~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 354 SSAAGLTAAVVRDKV--TGE--WVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred ccccCceeEEEEccC--CCe--EEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 110000000000000 110 001234566788899999999999999999999999999999877 534444 36778
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcC-CCCHHHHHHHHHHHHHHH------
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQ-PLDRDQISSIVRLQLDRV------ 868 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~-~l~~~~l~~I~~~~l~~~------ 868 (973)
++++|+....... ... +.+ .=.|+++|++|||.++... .++.+.=+.++...+...
T Consensus 430 LAAaNP~~Gryd~-------~~~----~~e------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~ 492 (682)
T COG1241 430 LAAANPKFGRYDP-------KKT----VAE------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPE 492 (682)
T ss_pred hhhhCCCCCcCCC-------CCC----HHH------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccc
Confidence 9999984422111 100 111 2247899999999865554 455544444444443322
Q ss_pred -------------------HHH--HHhcCCceecCHHHHHHHHhcCCCCC-------------CCccHHHHHHHHHHHHH
Q 002068 869 -------------------QKR--IADRKMKMQVTDAAIQLLGSLGYDPN-------------YGARPVKRVIQQYVENE 914 (973)
Q Consensus 869 -------------------~~~--~~~~~~~l~~~~~a~~~L~~~~~~~~-------------~gaR~L~r~i~~~i~~~ 914 (973)
.+. +..+.+...+++++.+.|.++..... .-+|+|..+|+ +..+
T Consensus 493 ~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR--LaeA 570 (682)
T COG1241 493 ETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIR--LAEA 570 (682)
T ss_pred cccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHH--HHHH
Confidence 111 22234567899999999987521111 22677777765 4555
Q ss_pred HHHHHHcCCCCC
Q 002068 915 LAKGILRGEFKD 926 (973)
Q Consensus 915 la~~~l~~~~~~ 926 (973)
.|.+-+++.+.+
T Consensus 571 ~Ak~rLS~~V~~ 582 (682)
T COG1241 571 HAKMRLSDVVEE 582 (682)
T ss_pred HHhhhccCCCCH
Confidence 666666654443
No 400
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.91 E-value=1.3e-08 Score=116.33 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=135.5
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHc-cCCC--CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecc
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRA-GLSD--PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~-~~~~--~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (973)
.+..|...+-..|.|.++++..+.-++--... .... .-|.--|+||+|.||||||.+-+.+++.+-+ ..++ +.
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR---g~yT-SG 494 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR---GVYT-SG 494 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc---ceee-cC
Confidence 34456667778899999999888766631110 0000 0112238999999999999999999999832 1111 11
Q ss_pred ccccchhhhhhhcCCCCCccccc-ccchh---hHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEec
Q 002068 716 SEYMEKHAVSRLIGAPPGYVGYE-EGGQL---TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF 790 (973)
Q Consensus 716 ~~~~~~~~~~~l~G~~~g~~g~~-~~~~l---~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~ 790 (973)
.. +.-.|-.. |+..+ +.+++ .+++..+.++|.+|||+||+.....+.|+++||..+++... |--..+
T Consensus 495 kG-------sSavGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 495 KG-------SSAVGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred Cc-------cchhccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 00 00011111 22211 11221 45566778899999999999999999999999998888766 555555
Q ss_pred c-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceE-EEcCCCCHHHHHHHHHHHH---
Q 002068 791 T-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRDQISSIVRLQL--- 865 (973)
Q Consensus 791 ~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~-i~f~~l~~~~l~~I~~~~l--- 865 (973)
+ ++-||++.|+-...+... . .+.+ .=.++|.|++|||.+ +.+.+.++..=+.+.....
T Consensus 567 NAR~SVLAaANP~~skynp~------k-----~i~e------NI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy 629 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPN------K-----SIIE------NINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALY 629 (804)
T ss_pred cccceeeeeeccccccCCCC------C-----chhh------ccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhc
Confidence 4 667888888622111110 0 0111 113789999999975 5556666441122222211
Q ss_pred -H---------------HHHHHHHhcCCceecCHHHHHHHHhcCC
Q 002068 866 -D---------------RVQKRIADRKMKMQVTDAAIQLLGSLGY 894 (973)
Q Consensus 866 -~---------------~~~~~~~~~~~~l~~~~~a~~~L~~~~~ 894 (973)
. +.--.++...+...+++++.+.|....+
T Consensus 630 ~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayv 674 (804)
T KOG0478|consen 630 PETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYV 674 (804)
T ss_pred ccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhh
Confidence 1 1112234445677899999988887544
No 401
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.89 E-value=1.4e-08 Score=120.33 Aligned_cols=202 Identities=16% Similarity=0.185 Sum_probs=121.1
Q ss_pred CCCCCchHHHHHHHHHhccCC------------CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE---EEc
Q 002068 255 DPVIGRDDEIRRCIQILSRRT------------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS---LDM 319 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~~------------~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~---l~~ 319 (973)
..++|++.....++-.|..+. .-|+||+|+||||||++|+.+++..... .+.. .+.
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---------~~~~~~~~~~ 273 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---------VYTTGKGSSA 273 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---------eEcCCCCCCc
Confidence 358898876555555553321 1289999999999999999999976221 1111 011
Q ss_pred ccccccc---cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 320 GALIAGA---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 320 ~~~~~g~---~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
..+.... ...|++. ++ ..+.....+++++|||++.+. ...+..|..+|+.+
T Consensus 274 ~~l~~~~~~~~~~g~~~--~~---~G~l~~A~~Gil~iDEi~~l~--------~~~q~~L~e~me~~~i~i~k~G~~~~l 340 (509)
T smart00350 274 VGLTAAVTRDPETREFT--LE---GGALVLADNGVCCIDEFDKMD--------DSDRTAIHEAMEQQTISIAKAGITTTL 340 (509)
T ss_pred CCccccceEccCcceEE--ec---CccEEecCCCEEEEechhhCC--------HHHHHHHHHHHhcCEEEEEeCCEEEEe
Confidence 1111100 0011110 00 000011245699999999987 34566677777543
Q ss_pred --CEEEEEccCchHH--------HhhhccCHHHHccCce--EEecCCCHHHHHHHHHHHHHHHhhh-------cCCccCH
Q 002068 384 --ELRCIGATTLDEY--------RKYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRERYELH-------HGVRISD 444 (973)
Q Consensus 384 --~i~iI~at~~~~~--------~~~~~~d~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~~~~~-------~~v~i~~ 444 (973)
++.+|+|+|+.+- ...+.+++++.+||+. +..+.|+.+...+|++.++...... ....++.
T Consensus 341 ~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (509)
T smart00350 341 NARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQ 420 (509)
T ss_pred cCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCH
Confidence 5678999997641 0124789999999984 4567789999999998877542211 1124667
Q ss_pred HHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhh
Q 002068 445 SALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 445 ~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~ 479 (973)
+.+.....++.+++.- .+++.+.+++-......+
T Consensus 421 ~~l~~yi~~ar~~~~P-~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 421 EFLRKYIAYAREKIKP-KLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhc
Confidence 7777777777663321 256777776666555444
No 402
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.89 E-value=3.1e-08 Score=109.26 Aligned_cols=203 Identities=22% Similarity=0.333 Sum_probs=125.2
Q ss_pred CCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCC---------------------
Q 002068 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR--------------------- 312 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~--------------------- 312 (973)
|.-++|++.--..++...-...-.++|+-|+.|+||||++|+|+..|....+- .|+
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCCCCCCChhhhhHHHHhhcc
Confidence 44578997766555554445566789999999999999999999998543211 011
Q ss_pred ------------eEEEEEcccccccccccchHHHHHHHHHHH--------HHHhCCCeEEEEccccccccCCCCCchhhH
Q 002068 313 ------------KLISLDMGALIAGAKYRGEFEDRLKAVLKE--------VTESEGQIILFIDEIHTVVGAGATNGAMDA 372 (973)
Q Consensus 313 ------------~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~--------~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~ 372 (973)
+++.+-++. .-.+..|.+. +.+.++. +......+||||||+..|. ..+
T Consensus 93 e~~~~~~~~r~v~~v~lPl~a--teDrvvGslD--i~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--------d~l 160 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGA--TEDRLVGSLD--IEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--------DHL 160 (423)
T ss_pred ccccccccceecceecCCCcc--chhhhccccC--HHHHHhcCccccCCcchhhccCCEEEEecccccc--------HHH
Confidence 111111111 0011122111 1111111 1112345799999999886 558
Q ss_pred HHHHhhhhcCC---------------CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCC-CHHHHHHHHHHHHHHHh
Q 002068 373 GNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRGLRERYE 435 (973)
Q Consensus 373 ~~~L~~~l~~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p-~~~e~~~il~~~~~~~~ 435 (973)
++.|+..++.| ++.+|||+|+++- ++-|.|+.||. .|.+..| +.+++.+|.+.-... +
T Consensus 161 vd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f-~ 235 (423)
T COG1239 161 VDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF-E 235 (423)
T ss_pred HHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh-h
Confidence 88898888754 7789999999974 78899999997 6888887 789999988665542 1
Q ss_pred hhcCCccCHHHHHHHH----------HhcccccCCCCCchHHHHHHHHHHhhhhhh
Q 002068 436 LHHGVRISDSALVEAA----------ILSDRYISGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 436 ~~~~v~i~~~~l~~l~----------~~s~~~i~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
..++..++.+. -.+...++...+++.+...+-..|....+.
T Consensus 236 -----~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~ 286 (423)
T COG1239 236 -----AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVD 286 (423)
T ss_pred -----cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccC
Confidence 11222222111 112234456667777777777777666554
No 403
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=9.2e-08 Score=104.45 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=100.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec--cccccchh---hhhhhcCCCCCcccccc---cchhhHH----HH
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRID--MSEYMEKH---AVSRLIGAPPGYVGYEE---GGQLTEV----VR 748 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~--~~~~~~~~---~~~~l~G~~~g~~g~~~---~~~l~~~----~~ 748 (973)
.++++||+|+|||++++.+++.+... .+.... ........ .+...+|.+.. +... ...+... ..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999887422 222111 11111111 12233444321 1110 0122222 22
Q ss_pred hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHH
Q 002068 749 RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVM 828 (973)
Q Consensus 749 ~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 828 (973)
.....||+|||++.+++..++.|..+.+... + ....+.|+++........
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~--~------~~~~~~vvl~g~~~~~~~---------------------- 170 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQT--D------NAKLLQIFLVGQPEFRET---------------------- 170 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCccc--C------CCCeEEEEEcCCHHHHHH----------------------
Confidence 4556799999999999988887766554310 1 012234566655421111
Q ss_pred HHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 829 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 829 ~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
+...-...+.+|+...+.++|++.+++.+++...+... .......+++++++.|.+.
T Consensus 171 --l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~ 227 (269)
T TIGR03015 171 --LQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRF 227 (269)
T ss_pred --HcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHH
Confidence 01101124678887889999999999999988877531 1111346899999999986
No 404
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.87 E-value=2.6e-09 Score=119.33 Aligned_cols=227 Identities=13% Similarity=0.179 Sum_probs=121.5
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCC----CCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecc
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPH----RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~----~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (973)
+..+.+.+-..|+|.+.++..|.-++-.... ...+. |.-.|+||+|.||||||.|.+.+++.. ..-++.+.
T Consensus 15 ~~~l~~s~aP~i~g~~~iK~aill~L~~~~~-~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~g 89 (331)
T PF00493_consen 15 FDRLANSIAPSIYGHEDIKKAILLQLFGGVE-KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTSG 89 (331)
T ss_dssp HHCCHHHCSSTTTT-HHHHHHHCCCCTT--S-CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEEC
T ss_pred HHHHHHHhCCcCcCcHHHHHHHHHHHHhccc-cccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEECC
Confidence 4455667778899988877766444321111 00111 222489999999999999999887665 22334333
Q ss_pred ccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEecc-CE
Q 002068 716 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-NT 793 (973)
Q Consensus 716 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~~-~~ 793 (973)
........... +...+...++ ..-.+++-.+.++|++|||+|++..+....|+++||.|.++... |....++ ++
T Consensus 90 ~~~s~~gLta~-~~~d~~~~~~---~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 90 KGSSAAGLTAS-VSRDPVTGEW---VLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CGSTCCCCCEE-ECCCGGTSSE---CEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred CCcccCCccce-ecccccccee---EEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 33211110000 0000000000 12246778889999999999999999999999999999999877 6666665 88
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEc-CCCCHHHHHHHHHHHHHHHHH--
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF-QPLDRDQISSIVRLQLDRVQK-- 870 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f-~~l~~~~l~~I~~~~l~~~~~-- 870 (973)
-|++++|+.......... .. + .-.+++.|++|||.++.+ .+++.+.=..+....++....
T Consensus 166 svlaa~NP~~g~~~~~~~---~~------------~--ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~ 228 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKS---LS------------E--NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGK 228 (331)
T ss_dssp EEEEEE--TT--S-TTS----CG------------C--CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S
T ss_pred hhHHHHhhhhhhcchhhh---hH------------H--hcccchhhHhhcCEEEEeccccccccccccceEEEecccccc
Confidence 899999985332211100 00 0 113788999999987665 555544444444433322111
Q ss_pred -----------------------HHHhcCCceecCHHHHHHHHhc
Q 002068 871 -----------------------RIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 871 -----------------------~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
.+.+..+...+++++.++|..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~ 273 (331)
T PF00493_consen 229 KSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINY 273 (331)
T ss_dssp --------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHH
T ss_pred ccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHH
Confidence 0112245678999999998875
No 405
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5e-08 Score=107.26 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=101.8
Q ss_pred HHHHHHHHHhccCCCC-CceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------cCCCeEEEEEccccccccc
Q 002068 262 DEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------LMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 262 ~~i~~li~~l~~~~~~-~~LL~GppG~GKT~la~~la~~l~~~~~p~~-------------l~~~~~~~l~~~~~~~g~~ 327 (973)
..-+++...+.+.+.+ ..||+||.|+||+++|+.+|+.+.+.+.+.. ..+-.++.+.... .| +
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~-~ 86 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG-K 86 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-C
Confidence 3455566665555544 4689999999999999999999977542210 1122344443211 01 1
Q ss_pred ccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhcc
Q 002068 328 YRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 402 (973)
Q Consensus 328 ~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~ 402 (973)
. -..+.++.+.+.+.. .++.-|++||++|.|. ..++|.|+..+|+ .++.+|..|+..+ .+
T Consensus 87 ~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~l 151 (319)
T PRK06090 87 S--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----RL 151 (319)
T ss_pred c--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----hC
Confidence 1 112345555554433 2345699999999997 6688999999984 4688888888776 57
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHH
Q 002068 403 DPALERRFQQVYVDQPNVEDTISILR 428 (973)
Q Consensus 403 d~al~~Rf~~i~~~~p~~~e~~~il~ 428 (973)
-|.++|||+.+.|+.|+.++..+.|.
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 89999999999999999998777664
No 406
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.85 E-value=1.5e-08 Score=118.19 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=93.6
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccC------------------CCeE
Q 002068 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM------------------NRKL 314 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~------------------~~~~ 314 (973)
.|++++|+...++.+...+ ....+++|+||||+|||++++.++..+........+. ..+|
T Consensus 190 d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 6788999988766555443 4556899999999999999999998663321111111 1222
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------
Q 002068 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------- 383 (973)
Q Consensus 315 ~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g----------- 383 (973)
.....+....+. ..|....+ ...+. ...+++|||||++.+. ..+++.|.+.|+.+
T Consensus 268 ~~p~~s~s~~~~-~ggg~~~~-pG~i~----lA~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~~ 333 (499)
T TIGR00368 268 RSPHHSASKPAL-VGGGPIPL-PGEIS----LAHNGVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAKI 333 (499)
T ss_pred cccccccchhhh-hCCccccc-hhhhh----ccCCCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcce
Confidence 222111110000 00000000 01111 2245799999999886 56788888888755
Q ss_pred ----CEEEEEccCchHHHh------------------hhccCHHHHccCc-eEEecCCCHHH
Q 002068 384 ----ELRCIGATTLDEYRK------------------YIEKDPALERRFQ-QVYVDQPNVED 422 (973)
Q Consensus 384 ----~i~iI~at~~~~~~~------------------~~~~d~al~~Rf~-~i~~~~p~~~e 422 (973)
++++|+++|+.+... ...+.++|++||+ .+.++.++.++
T Consensus 334 ~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 334 FYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred eccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 468999999753111 1257899999999 67888776553
No 407
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.85 E-value=3.8e-08 Score=111.85 Aligned_cols=253 Identities=16% Similarity=0.187 Sum_probs=147.8
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHH---ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSR---AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 638 ~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~---~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
..+..|...++..|+|.+.++..|.-++--.- .+..-+-|.-.|++++|.|||||+.+.++....+. .. ++..
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP---R~-vYts 409 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP---RS-VYTS 409 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC---cc-eEec
Confidence 44667788899999999999988876652111 11111222224899999999999999999998872 22 2222
Q ss_pred cccccch-hhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEecc-
Q 002068 715 MSEYMEK-HAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT- 791 (973)
Q Consensus 715 ~~~~~~~-~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~~- 791 (973)
...-+.. .+.+ +...+.+ | +.-.-.+++--+.++|..|||+||++..-|-+|..+||...++... |-...++
T Consensus 410 GkaSSaAGLTaa-VvkD~es--g--df~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 410 GKASSAAGLTAA-VVKDEES--G--DFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred CcccccccceEE-EEecCCC--C--ceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecc
Confidence 1111000 0000 1111110 0 0012245666788899999999999998899999999998888766 4444443
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceE-EEcCCCCHHHHHHHHHHHHHH---
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRDQISSIVRLQLDR--- 867 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~-i~f~~l~~~~l~~I~~~~l~~--- 867 (973)
++-||+++|+-...... ...+.+ .=.+++++++|||.+ |.+..+++..=..|....+..
T Consensus 485 RtSIlAAANPv~GhYdR-----------~ktl~e------Ni~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~ 547 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDR-----------KKTLRE------NINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRG 547 (764)
T ss_pred hhhhhhhcCCcCCcccc-----------ccchhh------hcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcc
Confidence 45577777773222111 111222 124789999999974 555666655444444433321
Q ss_pred ---------------HHHHHH-hcCCceecCHHHHHHHHhcC----C---------CCCCCccHHHHHHHHHHHHHHHHH
Q 002068 868 ---------------VQKRIA-DRKMKMQVTDAAIQLLGSLG----Y---------DPNYGARPVKRVIQQYVENELAKG 918 (973)
Q Consensus 868 ---------------~~~~~~-~~~~~l~~~~~a~~~L~~~~----~---------~~~~gaR~L~r~i~~~i~~~la~~ 918 (973)
+.+.+. .+.+...++.++-+.|.++. . ++..-+|+|+..|+ +..++|+.
T Consensus 548 i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 548 IDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARV 625 (764)
T ss_pred ccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhh
Confidence 111111 12556778888888877641 0 22345777777775 34444443
No 408
>PRK12377 putative replication protein; Provisional
Probab=98.85 E-value=7.7e-09 Score=109.88 Aligned_cols=106 Identities=21% Similarity=0.407 Sum_probs=71.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||+||.+|++.+...+..++.+...++....... +.. + .....+...+... .+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--~~~-----~-~~~~~~l~~l~~~--dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--YDN-----G-QSGEKFLQELCKV--DLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--Hhc-----c-chHHHHHHHhcCC--CEEEEcCC
Confidence 799999999999999999999997666777888777765432111 110 0 0001233334444 49999999
Q ss_pred --cccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 761 --EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 761 --d~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+...+..++.|+++++...- .+.=.|+|||.+.+.+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~----------~~~ptiitSNl~~~~l 210 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh----------cCCCEEEEcCCCHHHH
Confidence 55678889999999986321 1122688999965443
No 409
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.82 E-value=3.2e-08 Score=102.38 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=74.2
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-CEEEEEccCchH--------HHhhhccCHHHHccCceEEecCCC
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDE--------YRKYIEKDPALERRFQQVYVDQPN 419 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~i~iI~at~~~~--------~~~~~~~d~al~~Rf~~i~~~~p~ 419 (973)
|+||||||+|+|- .+....|.+.+++. .-++|+|+|.-- ...-+.+++.|.+|+-.|..-.++
T Consensus 297 PGVLFIDEVhMLD--------iEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------IECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhhh--------hHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 6799999999986 77888899998855 456777777431 112245789999999888888889
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 420 VEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 420 ~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
.++.++|++.... ..++.++++++..++.+..
T Consensus 369 ~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred HHHHHHHHHHHHh----hhcceecHHHHHHHHhhcc
Confidence 9999999876555 3688999999998887653
No 410
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.81 E-value=7.4e-09 Score=82.63 Aligned_cols=53 Identities=42% Similarity=0.644 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhh
Q 002068 94 SPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQ 146 (973)
Q Consensus 94 A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~ 146 (973)
|+++|++++|.+|++||||+||+.++++.+.++|+++|+|++.+++++.+.++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999988764
No 411
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.80 E-value=7.8e-08 Score=113.08 Aligned_cols=186 Identities=19% Similarity=0.274 Sum_probs=119.1
Q ss_pred CCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc---
Q 002068 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--- 327 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~--- 327 (973)
.+..++|....++.+.+.+.+ ....+++++|++||||+++|+.+...... .+.+++.+||..+....-
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChHHHHHH
Confidence 566789998888877776643 34567899999999999999999976422 256899999987621000
Q ss_pred ----ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEc
Q 002068 328 ----YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (973)
Q Consensus 328 ----~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~a 390 (973)
..|.+..........+. ...+++|||||++.|. ...+..|..+++.+ ++++|++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~-~a~~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 210 LFGYEKGAFTGAVKQTLGKIE-YAHGGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred hcCCCCCCcCCCccCCCCcee-ECCCCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 00000000000000011 1345799999999998 55777777777543 5789999
Q ss_pred cCchHHHh--hhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 391 TTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 391 t~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
|+.+.... --.+.+.|..|+..+.|..|+..+|.+ +++.++.++...++ ..++++++..+..+.
T Consensus 281 ~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (445)
T TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353 (445)
T ss_pred cCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC
Confidence 98764211 113556777888777777777655554 45666666554433 468888888776654
No 412
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.80 E-value=6e-08 Score=117.46 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=101.8
Q ss_pred CCCCCchHHHHHHHHHhccCC---------------------CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCe
Q 002068 255 DPVIGRDDEIRRCIQILSRRT---------------------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRK 313 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~~---------------------~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~ 313 (973)
..|.|++...+.++-.|..+. ..|+||+|+||||||.+|+.+++...... ...+.+
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCC
Confidence 357898887777776663321 12789999999999999999998653221 012334
Q ss_pred EEEEEcccccc-cccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------
Q 002068 314 LISLDMGALIA-GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------- 383 (973)
Q Consensus 314 ~~~l~~~~~~~-g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------- 383 (973)
+..+++..... .....|++.-. ..+.....+++++|||++.+. ...+..|..+|+.+
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le-----~GaLvlAdgGtL~IDEidkms--------~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQ-----PGAVVLANGGVCCIDELDKCH--------NESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred CccccccchhhhcccccCccccc-----CCcEEEcCCCeEEecchhhCC--------HHHHHHHHHHHhCCEEEEecCCc
Confidence 44444433221 00001211100 001112345799999999987 44566677777543
Q ss_pred ------CEEEEEccCchHHH--------hhhccCHHHHccCce--EEecCCCHHHHHHHHHHHHHH
Q 002068 384 ------ELRCIGATTLDEYR--------KYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRER 433 (973)
Q Consensus 384 ------~i~iI~at~~~~~~--------~~~~~d~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~ 433 (973)
++.+|+|+|+...+ .-+.+++++++||+. +.++.|+.+.=..|..+++..
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 57899999986322 235788999999984 466777877767777777653
No 413
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=3.1e-08 Score=106.72 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccch-hhhhhhcCCCCC-
Q 002068 656 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK-HAVSRLIGAPPG- 733 (973)
Q Consensus 656 ~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~-~~~~~l~G~~~g- 733 (973)
...+.+.+++...+. ...+||+||+|+||+.+|..+|+.+++...+ -.|..+... |.--.++ .|.+
T Consensus 4 ~~~~~L~~~i~~~rl--------~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~---~~c~~~~~~~HPD~~~i-~p~~~ 71 (290)
T PRK05917 4 AAWEALIQRVRDQKV--------PSAIILHGQDLSNLSARAYELASLILKETSP---EAAYKISQKIHPDIHEF-SPQGK 71 (290)
T ss_pred HHHHHHHHHHHcCCc--------CeeEeeECCCCCcHHHHHHHHHHHHhCCCCc---cHHHHHhcCCCCCEEEE-ecCCC
Confidence 345666666654221 2369999999999999999999999764322 122211110 0000001 0111
Q ss_pred --cccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 734 --YVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 734 --~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
.++.+..+.+.+.+.. +++.|++||++|++..+.+|.||+.||+ ...+++||+.|+.
T Consensus 72 ~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~------ 134 (290)
T PRK05917 72 GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAK------ 134 (290)
T ss_pred CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCC------
Confidence 1222222334444443 4457999999999999999999999998 4568888888876
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~ 853 (973)
...+.|.+++|| ..+.|+|+.
T Consensus 135 ------------------------~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 135 ------------------------PQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred ------------------------hhhCcHHHHhcc-eEEEccchh
Confidence 344677889999 788898764
No 414
>PRK08116 hypothetical protein; Validated
Probab=98.79 E-value=2.7e-08 Score=107.77 Aligned_cols=108 Identities=15% Similarity=0.305 Sum_probs=72.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+|++|||||+||.+|++.+...+.+++.++.+++..... .-++... . .....+...+... .+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~--~~~~~~~---~-~~~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK--STYKSSG---K-EDENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--HHHhccc---c-ccHHHHHHHhcCC--CEEEEecc
Confidence 5999999999999999999999865567888888877644211 1111100 0 0001233344444 49999999
Q ss_pred --cccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 761 --EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 761 --d~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+...+..+..|+++++... . .+.-+|+|||..+..+
T Consensus 188 g~e~~t~~~~~~l~~iin~r~-~---------~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY-R---------KGLPTIVTTNLSLEEL 225 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHH
Confidence 6677888999999998631 1 1234899999865443
No 415
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.77 E-value=8e-08 Score=110.44 Aligned_cols=190 Identities=20% Similarity=0.268 Sum_probs=119.9
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc-------
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------- 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------- 719 (973)
.+++++|+++++++|...+..+..++.. +++ .++|+||||+|||+||+.|++.+-. .|+..+..+++.
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~-~~~--IL~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEE-KKQ--ILYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCC-CCc--eEEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCC
Confidence 4567999999999999999888777754 344 5999999999999999999998831 133332220000
Q ss_pred ----------------------------chhhhh---hhcCC----------------------CCC---------cccc
Q 002068 720 ----------------------------EKHAVS---RLIGA----------------------PPG---------YVGY 737 (973)
Q Consensus 720 ----------------------------~~~~~~---~l~G~----------------------~~g---------~~g~ 737 (973)
+++... .+-|. +|+ .+|.
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 000000 00000 000 0110
Q ss_pred cccc-------------hhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChh
Q 002068 738 EEGG-------------QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (973)
Q Consensus 738 ~~~~-------------~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 804 (973)
.+.+ .+.+.+..+..|++=|=|+-|++.+++..||.+.++|.+.-..|...-.-+.+||+.||-.
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~-- 306 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNES-- 306 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHH--
Confidence 0000 1233445566678888899999999999999999999986544432233478899999961
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCH-HHHHHHHHHHH
Q 002068 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQISSIVRLQL 865 (973)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~-~~l~~I~~~~l 865 (973)
............+|++|+ .+|.+|...+ .+=.+|.+..+
T Consensus 307 ---------------------E~~~F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll 346 (644)
T PRK15455 307 ---------------------EWQTFRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLL 346 (644)
T ss_pred ---------------------HHHHHhcCccchhhhceE-EEEeCCccCChhHHHHHHHHHh
Confidence 112222455678999999 7788887543 34446666555
No 416
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.77 E-value=5.7e-08 Score=108.78 Aligned_cols=174 Identities=16% Similarity=0.327 Sum_probs=111.3
Q ss_pred CceEEEeecCCCCcHHHHHHHHHHHhcCCCc--ceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEE
Q 002068 678 PIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVI 755 (973)
Q Consensus 678 p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~--~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl 755 (973)
+..+++|+||+|.|||+|++++++....... .++++....+....-.. +.. +...++-+...-.++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a-~~~-----------~~~~~Fk~~y~~dll 179 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKA-LRD-----------NEMEKFKEKYSLDLL 179 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHH-HHh-----------hhHHHHHHhhccCee
Confidence 3446999999999999999999998854333 45666665554321100 000 011111111233599
Q ss_pred EEccccccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHh
Q 002068 756 LFDEIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (973)
Q Consensus 756 ~lDEid~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (973)
+||+|+.+.. ..+..|...+.. +.+ .+-.+|+|+...+..+.
T Consensus 180 lIDDiq~l~gk~~~qeefFh~FN~--l~~--------~~kqIvltsdr~P~~l~-------------------------- 223 (408)
T COG0593 180 LIDDIQFLAGKERTQEEFFHTFNA--LLE--------NGKQIVLTSDRPPKELN-------------------------- 223 (408)
T ss_pred eechHhHhcCChhHHHHHHHHHHH--HHh--------cCCEEEEEcCCCchhhc--------------------------
Confidence 9999998763 345555555532 000 11157888876443332
Q ss_pred ccChhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 834 IFRPEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 834 ~f~p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.+.|.|.+||. .++.+.||+.+....|+...... . .+.++++++++|+.. ++.+ .|+|..++.++.
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~-------~--~~~i~~ev~~~la~~-~~~n--vReLegaL~~l~ 291 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED-------R--GIEIPDEVLEFLAKR-LDRN--VRELEGALNRLD 291 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHH-hhcc--HHHHHHHHHHHH
Confidence 24567888885 48999999999999999984422 3 578999999999995 5444 688777776644
No 417
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.77 E-value=6.1e-08 Score=116.20 Aligned_cols=186 Identities=19% Similarity=0.203 Sum_probs=115.2
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchH--HHHHHH---HH-HHHHHhC
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF--EDRLKA---VL-KEVTESE 347 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~--e~~l~~---~~-~~~~~~~ 347 (973)
..-.++||.|+||||||++|++|++.+.. ..+|+.++.+... ....|.. +..+.. .+ .......
T Consensus 14 p~~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 14 PSLGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred CCcceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 33568999999999999999999998622 1246655532111 1112221 110000 00 0000112
Q ss_pred CCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------CEEEEEccCchHHHhhhccCHHHHccCc-
Q 002068 348 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ- 411 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~- 411 (973)
.+++|||||++.+. ...++.|..+|+.+ ++++|+++|..+... .+.++|..||.
T Consensus 84 ~~GvL~lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~l 153 (589)
T TIGR02031 84 PRGVLYVDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLAL 153 (589)
T ss_pred CCCcEeccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhccC
Confidence 35699999999997 56788888888755 368999888775322 57899999997
Q ss_pred eEEecC-CCHHHHHHHHHHHHHHH-------------------hhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHH
Q 002068 412 QVYVDQ-PNVEDTISILRGLRERY-------------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLV 471 (973)
Q Consensus 412 ~i~~~~-p~~~e~~~il~~~~~~~-------------------~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ll 471 (973)
.|.+.. |+.+++.+|++.....+ .....|.++++.+.+++.++-.+--. -+...+.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~--s~Ra~i~~~ 231 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS--GHRADLFAV 231 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC--CccHHHHHH
Confidence 455555 57788888887654211 11235778888888888877543221 134556666
Q ss_pred HHHHhhhhhh
Q 002068 472 DEAAAKLKME 481 (973)
Q Consensus 472 d~a~~~~~~~ 481 (973)
..|.+.+.+.
T Consensus 232 r~ArA~Aal~ 241 (589)
T TIGR02031 232 RAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHh
Confidence 6666555554
No 418
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.76 E-value=5.3e-08 Score=116.34 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=80.9
Q ss_pred CCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------------------CEEEEEccCchHHHhhhccCH
Q 002068 348 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIGATTLDEYRKYIEKDP 404 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------------------~i~iI~at~~~~~~~~~~~d~ 404 (973)
.+++|||||++.|. ...+..|+.+|+.+ ++++|++++.+.. ...+|
T Consensus 226 nGGtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll---~~~dp 294 (637)
T PRK13765 226 HKGVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL---ENMHP 294 (637)
T ss_pred CCcEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH---HhhhH
Confidence 46799999999995 45777777777433 4589999998653 24689
Q ss_pred HHHccCc----eEEecC--C-CHHHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHhcccccCCCC---C-chHHHHHHH
Q 002068 405 ALERRFQ----QVYVDQ--P-NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGRF---L-PDKAIDLVD 472 (973)
Q Consensus 405 al~~Rf~----~i~~~~--p-~~~e~~~il~~~~~~~~~~-~~v~i~~~~l~~l~~~s~~~i~~r~---~-p~~a~~lld 472 (973)
+|..||. .+.|.. + +.+.+..+++.+....... .-..++++++..+++.+.|....|. + ..+..+++.
T Consensus 295 dL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r 374 (637)
T PRK13765 295 ALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVR 374 (637)
T ss_pred HHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHH
Confidence 9999995 244443 2 3556666666555544332 2347899999999998887766654 2 345556666
Q ss_pred HHHhhhh
Q 002068 473 EAAAKLK 479 (973)
Q Consensus 473 ~a~~~~~ 479 (973)
+|...++
T Consensus 375 ~a~~~a~ 381 (637)
T PRK13765 375 VAGDIAR 381 (637)
T ss_pred HHHHHHH
Confidence 6555444
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.3e-07 Score=105.06 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=99.7
Q ss_pred HHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCc---------------ccCCCeEEEEEcccc--ccc
Q 002068 263 EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ---------------ALMNRKLISLDMGAL--IAG 325 (973)
Q Consensus 263 ~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~---------------~l~~~~~~~l~~~~~--~~g 325 (973)
.-+++... ..+.++.+||+||+|+|||++|+.+|+.+.+..... ...+-.++.++...- ..|
T Consensus 9 ~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g 87 (325)
T PRK08699 9 QWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENG 87 (325)
T ss_pred HHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccccc
Confidence 34444444 234445688999999999999999999997632110 011234555543210 001
Q ss_pred ccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhhh
Q 002068 326 AKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYI 400 (973)
Q Consensus 326 ~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~~ 400 (973)
.+...-..+.++.+.+.+... ++.-|++||+++.|. ...+|.|+..+++. .+.+|.+|+...
T Consensus 88 ~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~~~~~Ilvth~~~----- 154 (325)
T PRK08699 88 RKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPPQVVFLLVSHAAD----- 154 (325)
T ss_pred ccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcCCCEEEEEeCChH-----
Confidence 000111244567777666542 345688999999997 55777888888754 566777777765
Q ss_pred ccCHHHHccCceEEecCCCHHHHHHHHH
Q 002068 401 EKDPALERRFQQVYVDQPNVEDTISILR 428 (973)
Q Consensus 401 ~~d~al~~Rf~~i~~~~p~~~e~~~il~ 428 (973)
.+.+.+.+||+.+.|++|+.++..+.|.
T Consensus 155 ~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 4779999999999999999998776653
No 420
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2.1e-08 Score=111.21 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=97.0
Q ss_pred ccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc------ch-hhh
Q 002068 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------EK-HAV 724 (973)
Q Consensus 652 ~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------~~-~~~ 724 (973)
.++....+++.... + +-...+||+||+|+|||++|+.+|+.+.+....--...|+... .. |.-
T Consensus 4 PW~~~~w~~l~~~~-----~-----r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD 73 (325)
T PRK08699 4 PWHQEQWRQIAEHW-----E-----RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD 73 (325)
T ss_pred CccHHHHHHHHHhc-----C-----CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 45666666665441 1 2223699999999999999999999996532100001222220 00 000
Q ss_pred hhhcCC-----CCC----cccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 725 SRLIGA-----PPG----YVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 725 ~~l~G~-----~~g----~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
-..+.. ..| .++.+..+.+.+.+.. ..+.|+++|+++.+++..++.|++.|++. ..
T Consensus 74 ~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-----------~~ 142 (325)
T PRK08699 74 FYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-----------PP 142 (325)
T ss_pred EEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-----------cC
Confidence 000100 001 1222223344444443 44579999999999999999999999972 13
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
++.||++|+. ...+.|.+.+|| ..+.|+|++.+++.+.+..
T Consensus 143 ~~~~Ilvth~------------------------------~~~ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 143 QVVFLLVSHA------------------------------ADKVLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCEEEEEeCC------------------------------hHhChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 4556666654 123556788999 7899999999888766653
No 421
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.75 E-value=2.4e-08 Score=92.78 Aligned_cols=66 Identities=30% Similarity=0.565 Sum_probs=58.2
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT 706 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~ 706 (973)
....|+..|...++||.-|++.|.+++...... ..|++|+ .+.|+||||||||.+++.||+.+|..
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 355788889999999999999999999987654 4689998 78999999999999999999999754
No 422
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.75 E-value=1.5e-08 Score=109.69 Aligned_cols=149 Identities=17% Similarity=0.341 Sum_probs=92.0
Q ss_pred HHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH
Q 002068 266 RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE 345 (973)
Q Consensus 266 ~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~ 345 (973)
.+++.+.. ...++||+||+|||||++++.+-+.+... ..-+..++++..... ..+..+++.-..
T Consensus 24 ~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tts--------~~~q~~ie~~l~ 87 (272)
T PF12775_consen 24 YLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTTS--------NQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHHH--------HHHHHCCCTTEC
T ss_pred HHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCCH--------HHHHHHHhhcEE
Confidence 34444433 35689999999999999998876654111 222445665544321 122222211110
Q ss_pred ----------hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--------------CEEEEEccCchHHHhhhc
Q 002068 346 ----------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIE 401 (973)
Q Consensus 346 ----------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~i~iI~at~~~~~~~~~~ 401 (973)
.+...|+||||++.-. .+..|......+|+++++.| ++.+|+|+++.. ....
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN~p~--~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~ 163 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLNMPQ--PDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNP 163 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--S
T ss_pred cCCCCCCCCCCCcEEEEEecccCCCC--CCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCC
Confidence 1335699999998654 33456666789999999744 678899988753 2235
Q ss_pred cCHHHHccCceEEecCCCHHHHHHHHHHHHHHH
Q 002068 402 KDPALERRFQQVYVDQPNVEDTISILRGLRERY 434 (973)
Q Consensus 402 ~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~ 434 (973)
+++.|.|.|..+.++.|+.+....|...++..+
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHH
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhh
Confidence 789999999999999999999999998888754
No 423
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.74 E-value=7.8e-08 Score=113.84 Aligned_cols=179 Identities=21% Similarity=0.289 Sum_probs=117.6
Q ss_pred CCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccc
Q 002068 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g 330 (973)
.+.+++|....++.+.+.+.+ ....+++++|++|||||++|++++..... .+.+++.+||+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~----- 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKD----- 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHH-----
Confidence 456789999888877776543 34567899999999999999999986522 2678999999876210
Q ss_pred hHHHHHHHHHHHH--------------HHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 331 EFEDRLKAVLKEV--------------TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 331 ~~e~~l~~~~~~~--------------~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
.++ ..+|... .....++.|||||++.|. .+.+..|..+++.+
T Consensus 204 ~~~---~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 204 LIE---SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP--------LDVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred HHH---HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC--------HHHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 000 0111100 011235689999999998 55677777777654
Q ss_pred CEEEEEccCchHHH--hhhccCHHHHccCceEEecCCCHHH----HHHHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 384 ELRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVED----TISILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 384 ~i~iI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e----~~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
++++|++|+.+... .--.+.+.|..||..+.+..|+..+ ...+++.++.++...++ ..++++++..+..+.
T Consensus 273 ~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 352 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 (469)
T ss_pred eEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 45899998876421 1113557888899877777776544 44556666666544433 257888887776554
No 424
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.73 E-value=1e-08 Score=103.96 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=72.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||+||.++++.+...+.++..++..++.+....+. + ......+...+...+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~--~-------~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR--S-------DGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH--C-------CTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc--c-------ccchhhhcCcccccc--Eeccccc
Confidence 7999999999999999999998877788888898888765432110 0 001124455555555 9999999
Q ss_pred ccc--CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhcc
Q 002068 761 EKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (973)
Q Consensus 761 d~l--~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~ 809 (973)
... .....+.|+++++... .+.-.|+|||...+.+.+.
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~~ 157 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEEV 157 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT-
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhhc
Confidence 765 4667888889887622 1223677999987766553
No 425
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5e-08 Score=117.97 Aligned_cols=121 Identities=25% Similarity=0.403 Sum_probs=91.5
Q ss_pred CCCCchHHHHHHHHHhccCC--------CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc----
Q 002068 256 PVIGRDDEIRRCIQILSRRT--------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI---- 323 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~~--------~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~---- 323 (973)
.|+||++.+..+.+.+++.. ...++|.||.|||||-||++||..+... ...++.+|++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhh
Confidence 49999999999999874422 2235999999999999999999999443 5679999999632
Q ss_pred ---ccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEE
Q 002068 324 ---AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRC 387 (973)
Q Consensus 324 ---~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~i 387 (973)
+...|+|..+.. .+.+.+ +..+.+|++||||+... .++++.|++++++| +++|
T Consensus 636 ligsp~gyvG~e~gg--~Lteav-rrrP~sVVLfdeIEkAh--------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGG--QLTEAV-KRRPYSVVLFEEIEKAH--------PDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred ccCCCcccccchhHH--HHHHHH-hcCCceEEEEechhhcC--------HHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 223367765543 334444 45678999999999876 78999999999877 5568
Q ss_pred EEccCch
Q 002068 388 IGATTLD 394 (973)
Q Consensus 388 I~at~~~ 394 (973)
|+|.|..
T Consensus 705 IMTsn~~ 711 (898)
T KOG1051|consen 705 IMTSNVG 711 (898)
T ss_pred EEecccc
Confidence 8877764
No 426
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.71 E-value=3.4e-08 Score=104.24 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=102.4
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc-c--eEEeccccccchhhhh
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A--LVRIDMSEYMEKHAVS 725 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~-~--~~~i~~~~~~~~~~~~ 725 (973)
..+++|++.+..+.+... .++-| |+||+||||||||....+.|..+++... . +..++.|+-..
T Consensus 41 ~dv~~~~ei~st~~~~~~-------~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg----- 106 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSG-------MPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG----- 106 (360)
T ss_pred hhHhcCCchhhHHHHhcc-------CCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC-----
Confidence 468888888888766632 23333 8999999999999999999999976311 0 11122221100
Q ss_pred hhcCCCCCcccccccchhhHHHH-------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEe
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 798 (973)
++. + ...-..+...+ .+....+++||+|.+..+.||+|.++++. ...|+.|+.-
T Consensus 107 --id~----v--r~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~ii 167 (360)
T KOG0990|consen 107 --IDP----V--RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFATI 167 (360)
T ss_pred --Ccc----h--HHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hccceEEEEe
Confidence 000 0 00001111111 23567999999999999999999998875 2346778777
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHH
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
+|. .....|++.+|| .-++|.|++..+...++...++
T Consensus 168 ~n~------------------------------~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 168 SNP------------------------------PQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred ccC------------------------------hhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHh
Confidence 776 344678899999 5689999998887777776553
No 427
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.70 E-value=2e-07 Score=107.72 Aligned_cols=152 Identities=24% Similarity=0.345 Sum_probs=100.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-------hCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~ 753 (973)
.+||+||||-|||+||+.||+.. +..++-||.|+-.....+..-+ ..++. ...+.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~kI---------------~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKEKI---------------ENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHHHH---------------HHHHhhccccccCCCcc
Confidence 48999999999999999999998 7889999999865544432211 11111 12345
Q ss_pred EEEEccccccCHHHHHHHHHhhcC-CeE-ecCCC------cEEec---cCEEEEEecCCChhhhhccCCCCCCccchHHH
Q 002068 754 VILFDEIEKAHSDVFNVFLQILDD-GRV-TDSQG------RTVSF---TNTVIIMTSNVGSQYILNMDDETFPKETAYET 822 (973)
Q Consensus 754 Vl~lDEid~l~~~v~~~Ll~~le~-g~~-~~~~g------~~v~~---~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~ 822 (973)
.|++||||-.++.+.+.|+.++.. +.. +-..+ ++-.+ .+. |||.+|.-
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNdL-------------------- 448 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICNDL-------------------- 448 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC-EEEEecCc--------------------
Confidence 789999999999999999999972 111 11111 01111 122 66666651
Q ss_pred HHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 823 IKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 823 ~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
|.|+|. .-+-.+|.|.|++...+.+-++..+ ... .+..+..++..|+++
T Consensus 449 ------------YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC-------~rE--~mr~d~~aL~~L~el 499 (877)
T KOG1969|consen 449 ------------YAPALRPLRPFAEIIAFVPPSQSRLVERLNEIC-------HRE--NMRADSKALNALCEL 499 (877)
T ss_pred ------------cchhhhhcccceEEEEecCCChhHHHHHHHHHH-------hhh--cCCCCHHHHHHHHHH
Confidence 334432 3344789999999887774433333 334 467899999999996
No 428
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.70 E-value=2.4e-07 Score=94.01 Aligned_cols=177 Identities=21% Similarity=0.329 Sum_probs=121.6
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++|-+...+.+.+.-.+...|.. -.++||+|.-||||+++++++...+...+..++.++-.++..-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~p-----ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLP-----ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCc-----ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 4578888888888887777665543 4489999999999999999999999887788888887776432
Q ss_pred CCCCCcccccccchhhHHHHhCCCe-EEEEcccccc-CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh---
Q 002068 729 GAPPGYVGYEEGGQLTEVVRRRPYA-VILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS--- 803 (973)
Q Consensus 729 G~~~g~~g~~~~~~l~~~~~~~~~~-Vl~lDEid~l-~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~--- 803 (973)
..+.+.++..+.. |||+|+.--= +.+....|-.+||.|.-. ...|++|-+|||..-
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~-------rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG-------RPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCccc-------CCCeEEEEEecCCccccc
Confidence 2455566655543 7888887543 345778888888865322 346999999999631
Q ss_pred hhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
+.+.+..+.. . .....+.+ ...+ .|-+||.-.+.|.|.+.++.-+|+..+.+.
T Consensus 189 e~~~dn~~~~--~---eih~~eav----eEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 189 EDMKDNEGST--G---EIHPSEAV----EEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HhhhhCCCcc--c---ccChhHHH----HHhh--chhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 1222111100 0 00111112 2222 366899999999999999999999988844
No 429
>PRK08181 transposase; Validated
Probab=98.70 E-value=9.7e-08 Score=102.77 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=71.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||+||.++++.+...+..++.+++.++......... . + ....+...+.+. .+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~----~---~--~~~~~l~~l~~~--dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR----E---L--QLESAIAKLDKF--DLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh----C---C--cHHHHHHHHhcC--CEEEEecc
Confidence 69999999999999999999988766777888888776554221110 0 0 001223333333 49999999
Q ss_pred cccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 761 d~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
+..+ +..+..|+++++... .+.-+|+|||.....+..
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~-----------~~~s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARY-----------ERRSILITANQPFGEWNR 215 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHH-----------hCCCEEEEcCCCHHHHHH
Confidence 8765 456778999997421 122388999997665544
No 430
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=8.5e-08 Score=92.74 Aligned_cols=130 Identities=23% Similarity=0.273 Sum_probs=75.9
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc------------cccchHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA------------KYRGEFEDRLKAVLKEV 343 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~------------~~~g~~e~~l~~~~~~~ 343 (973)
..+++|+||||||||++++.++..+... +..++.++++...... ............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999988322 1247777765443211 11223344455666666
Q ss_pred HHhCCCeEEEEccccccccCCCCCchhhH--HHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc-eEEecC
Q 002068 344 TESEGQIILFIDEIHTVVGAGATNGAMDA--GNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQ 417 (973)
Q Consensus 344 ~~~~~~~ILfiDEi~~l~~~~~~~~~~~~--~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ 417 (973)
.... +.+|||||++.+............ ..............+|+++|... ...+..+..|++ .+.+..
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred HhcC-CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEecC
Confidence 5433 579999999999754211000000 00122333456788899988511 234456666776 445443
No 431
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.69 E-value=1.2e-08 Score=99.40 Aligned_cols=130 Identities=24% Similarity=0.384 Sum_probs=82.7
Q ss_pred CCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHH
Q 002068 258 IGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 335 (973)
Q Consensus 258 iG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~ 335 (973)
||....++++.+.+.+ ....+++|+|++||||+++|+.|+..-.. ...+++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~-------~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR-------ANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT-------CCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc-------cCCCeEEechhhCc------------
Confidence 5777778888777644 56678999999999999999999987522 13345555554321
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc---CCCEEEEEccCchHHH--hhhccCHHHHccC
Q 002068 336 LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDEYR--KYIEKDPALERRF 410 (973)
Q Consensus 336 l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~i~iI~at~~~~~~--~~~~~d~al~~Rf 410 (973)
.++++.+ .++.|||+|++.+. .+.+..|..++. +.++++|++++.+... .--.+++.|..||
T Consensus 62 -~~~l~~a----~~gtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AELLEQA----KGGTLYLKNIDRLS--------PEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHHHHHC----TTSEEEEECGCCS---------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHHHHHc----CCCEEEECChHHCC--------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 2333332 46699999999998 455666666664 4578999988765421 1123557888888
Q ss_pred ceEEecCCC
Q 002068 411 QQVYVDQPN 419 (973)
Q Consensus 411 ~~i~~~~p~ 419 (973)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 755555554
No 432
>PRK06526 transposase; Provisional
Probab=98.68 E-value=2.2e-08 Score=107.17 Aligned_cols=105 Identities=22% Similarity=0.382 Sum_probs=71.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-hCCCeEEEEcc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDE 759 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDE 759 (973)
+++|+||||||||++|.+|+..+...+..+..+.+.++.+....... . +.+...+. -....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~----~--------~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH----A--------GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh----c--------CcHHHHHHHhccCCEEEEcc
Confidence 79999999999999999999988766666666666665443221110 0 12222222 23456999999
Q ss_pred ccccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 760 IEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 760 id~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
++..+ +..++.|+++++.. +.+.-+|+|||.....+.+
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r-----------~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSR-----------YERASLIVTSNKPFGRWGE 207 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHH-----------HhcCCEEEEcCCCHHHHHH
Confidence 99775 77788899999752 1223488999997665544
No 433
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=2.4e-07 Score=110.36 Aligned_cols=52 Identities=17% Similarity=0.345 Sum_probs=40.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++++||++.+..|...+.....+ ..+...++|+||||||||++++.+++.+
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999888777643222 2222258999999999999999999887
No 434
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=9.1e-08 Score=103.54 Aligned_cols=155 Identities=15% Similarity=0.273 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc------ch-hhhh
Q 002068 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------EK-HAVS 725 (973)
Q Consensus 653 Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------~~-~~~~ 725 (973)
.|..+++.+..++...+ ....+||+|| +||+++|+.+|+.+++.+.. -.-.|+... .. |.--
T Consensus 6 ~q~~~~~~L~~~~~~~r--------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~-~~~~Cg~C~~C~~i~~~~HPD~ 74 (290)
T PRK07276 6 KQPKVFQRFQTILEQDR--------LNHAYLFSGD--FASFEMALFLAQSLFCEQKE-GVLPCGHCRSCRLIEQGEFSDV 74 (290)
T ss_pred HHHHHHHHHHHHHHcCC--------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhcCCCCCe
Confidence 46667777777776432 2236899996 68999999999999764311 001122211 10 0000
Q ss_pred hhcCCCCC-cccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPG-YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g-~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
..+. +.| .++.+..+.+...+. .+++.|++||++|+++....|.||+.||+ ...+++||++|+
T Consensus 75 ~~i~-p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~ 142 (290)
T PRK07276 75 TVIE-PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTN 142 (290)
T ss_pred eeec-CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 0111 111 122222223333333 24568999999999999999999999998 456788888887
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 862 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~ 862 (973)
. ...+-|.+.+|| .+|.|++ +.+++.+++.
T Consensus 143 ~------------------------------~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 143 D------------------------------ENKVLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred C------------------------------hhhCchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 6 234677899999 8899977 6666666554
No 435
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=8.8e-08 Score=91.95 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=81.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDE 356 (973)
..++|+||.||||||+++.+++.+. ....++.+|+....... .....+...+.+.. ..++.+|||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRR----LADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHH----HhhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 4578999999999999999999873 13567778776553211 00000222222221 13567999999
Q ss_pred ccccccCCCCCchhhHHHHHhhhhcCC-CEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHH
Q 002068 357 IHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVED 422 (973)
Q Consensus 357 i~~l~~~~~~~~~~~~~~~L~~~l~~g-~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e 422 (973)
++.+. +....++.+.+.+ ++.+|.+++...... ......+..|...+.+.+.+..|
T Consensus 70 iq~~~---------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~-~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYLP---------DWEDALKFLVDNGPNIKIILTGSSSSLLS-KDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhhc---------cHHHHHHHHHHhccCceEEEEccchHHHh-hcccccCCCeEEEEEECCCCHHH
Confidence 99884 4667788777766 677777777655321 13446677788888998888776
No 436
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=7.4e-08 Score=93.17 Aligned_cols=118 Identities=24% Similarity=0.261 Sum_probs=70.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh---hcC-CCCCcccccccchhhHHHHhCCCeEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR---LIG-APPGYVGYEEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~---l~G-~~~g~~g~~~~~~l~~~~~~~~~~Vl~ 756 (973)
+++|+||||||||++++.++..+......++.++++.......... ..+ ......+..........++..+..||+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999999999965433688888887654332210 111 111111111112344555555568999
Q ss_pred EccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCC
Q 002068 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 801 (973)
+||++.+............... ..........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEEL---RLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhhh---HHHHHHHhcCCCEEEEEeCC
Confidence 9999999877665544431100 00000012345678888885
No 437
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.2e-07 Score=101.51 Aligned_cols=219 Identities=19% Similarity=0.250 Sum_probs=138.4
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~ 724 (973)
....+.|.+..+..+...+..+..+. ..|++.+.|-||||||.+-..+-..+... ....+++||.++....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~-----t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELN-----TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcc-----cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 34678888888888888887655432 22479999999999999887555444222 224589999987665443
Q ss_pred h-hhcCCC-CCcccccccchhhHHHH----h-CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEE
Q 002068 725 S-RLIGAP-PGYVGYEEGGQLTEVVR----R-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (973)
Q Consensus 725 ~-~l~G~~-~g~~g~~~~~~l~~~~~----~-~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 797 (973)
. .+++.- ...++-..+.+....+. . ...=|+++||+|.+...-+..|+.+++--.+ ..+++++|.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--------p~sr~iLiG 294 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--------PNSRIILIG 294 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--------Ccceeeeee
Confidence 2 222211 01111111122223332 2 2245899999999998888888888875332 234667777
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHh--ccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS--IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
..|. -.+.+++...+.. ...| ..+.|+||+.+++.+|+...+...
T Consensus 295 iANs-------------------lDlTdR~LprL~~~~~~~P-------~~l~F~PYTk~qI~~Il~~rl~~~------- 341 (529)
T KOG2227|consen 295 IANS-------------------LDLTDRFLPRLNLDLTIKP-------KLLVFPPYTKDQIVEILQQRLSEE------- 341 (529)
T ss_pred ehhh-------------------hhHHHHHhhhhhhccCCCC-------ceeeecCCCHHHHHHHHHHHHhcc-------
Confidence 7775 1222333332222 2333 579999999999999999888542
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
-...+-+.++++.+++...+....|.+-.++++.|+
T Consensus 342 -~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 342 -STSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred -cccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 134455688899998765555557877777776554
No 438
>PRK15115 response regulator GlrR; Provisional
Probab=98.63 E-value=3.8e-07 Score=107.21 Aligned_cols=176 Identities=19% Similarity=0.237 Sum_probs=115.4
Q ss_pred CCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHH
Q 002068 256 PVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 333 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e 333 (973)
.++|....++++++.... ....+++++|++|||||++|+.+.+.... .+.+++.+||..+... .++
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~-----~~~ 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQ-----LLE 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHH-----HHH
Confidence 478888888877775432 34457899999999999999999987522 2678999998875210 000
Q ss_pred HHHHHHHHH--------------HHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEE
Q 002068 334 DRLKAVLKE--------------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (973)
Q Consensus 334 ~~l~~~~~~--------------~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~ 386 (973)
..+|.. ......++.|||||+|.|. .+.+..|..+++.+ +++
T Consensus 203 ---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 203 ---SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP--------APLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred ---HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC--------HHHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 011110 0112235699999999998 55677777777643 568
Q ss_pred EEEccCchHHHh--hhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 387 CIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 387 iI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
+|++|+.+.... .-.+.+.+..|+..+.|..|+..+|.+ +++.++..+...++ ..++++++..+..+.
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 999988653211 113456777788878888887766654 44566665544333 247899888887665
No 439
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.63 E-value=2.3e-07 Score=100.53 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=97.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
++||+||+|||||.+++.+-+.+.....-...++++.......+..++-..-.. ..++.+ +. ......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k---~~~~~~-gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEK---RRGRVY-GP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECE---CTTEEE-EE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEc---CCCCCC-CC-CCCcEEEEEeccc
Confidence 699999999999999988766653322234567787766555444443221100 000000 00 1223459999999
Q ss_pred cccCHH------HHHHHHHhhcCCeEecCC-CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHh
Q 002068 761 EKAHSD------VFNVFLQILDDGRVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (973)
Q Consensus 761 d~l~~~------v~~~Ll~~le~g~~~~~~-g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (973)
..-.++ ..+.|.|+++.|-+.|.. -......++.+|+++|++. + +.
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~-------G--------------------r~ 162 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG-------G--------------------RN 162 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT-------T----------------------
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC-------C--------------------CC
Confidence 865533 679999999998888754 3446667999999999732 1 11
Q ss_pred ccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHH
Q 002068 834 IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQ 869 (973)
Q Consensus 834 ~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~ 869 (973)
.++|-|++.| .++.+++++.+.+..|....+....
T Consensus 163 ~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 163 PISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhc
Confidence 2456677777 7899999999999999998886543
No 440
>PRK08116 hypothetical protein; Validated
Probab=98.62 E-value=3.1e-07 Score=99.46 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=74.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc--ccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--YRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~--~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
.+++|+|+||||||+||.++++.+... +.+++.++.+.+....+ +.+........+++.+. ..-+|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~---~~dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV---NADLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc---CCCEEEE
Confidence 358999999999999999999998543 56778887666542211 11111111223444433 2239999
Q ss_pred ccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccC----ceEEecCCCH
Q 002068 355 DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF----QQVYVDQPNV 420 (973)
Q Consensus 355 DEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf----~~i~~~~p~~ 420 (973)
||++..... ......+.+++......+ ..+|.|||..+-.-.-..+..+.+|+ ..|.+..++.
T Consensus 185 DDlg~e~~t--~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 185 DDLGAERDT--EWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ecccCCCCC--HHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 999653211 111122334444433344 45666777654211112468888884 3567776664
No 441
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.2e-06 Score=94.41 Aligned_cols=156 Identities=14% Similarity=0.111 Sum_probs=103.0
Q ss_pred HHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc------cCCCeEEEEEcccccccccccchHHHHH
Q 002068 264 IRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------LMNRKLISLDMGALIAGAKYRGEFEDRL 336 (973)
Q Consensus 264 i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------l~~~~~~~l~~~~~~~g~~~~g~~e~~l 336 (973)
-+.+...+.+...+| .||+||+|+||+++|..+|+.+.+.+.+.. ..+-.++.+....- .+. -..+.+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~~--I~idqi 80 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GRL--HSIETP 80 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CCc--CcHHHH
Confidence 455556665555444 579999999999999999999987542211 11222333321100 000 113345
Q ss_pred HHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCc
Q 002068 337 KAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQ 411 (973)
Q Consensus 337 ~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~ 411 (973)
+.+.+.+... ++.-|++||++|.|. .+++|.|+..+|+ +++++|..|+..+ .+-|.++|||+
T Consensus 81 R~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SRcq 147 (290)
T PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSRSL 147 (290)
T ss_pred HHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhcce
Confidence 6666665542 345699999999998 6688999999984 4788888887776 68899999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccc
Q 002068 412 QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (973)
Q Consensus 412 ~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~ 456 (973)
.+.|+++. ...++++....++.++.+
T Consensus 148 ~~~~~~~~-------------------~~~i~~~~~~~l~~~~~g 173 (290)
T PRK05917 148 SIHIPMEE-------------------KTLVSKEDIAYLIGYAQG 173 (290)
T ss_pred EEEccchh-------------------ccCCCHHHHHHHHHHhCC
Confidence 99987751 113566666666666653
No 442
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.59 E-value=4.7e-07 Score=106.89 Aligned_cols=182 Identities=16% Similarity=0.213 Sum_probs=114.9
Q ss_pred CCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc-----
Q 002068 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG----- 325 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g----- 325 (973)
.+..++|....+..+.+.+.+ ....++++.|++||||+++|+++...... .+.+++.+||..+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~~~~~~ 213 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPESLLESE 213 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHHHHHHH
Confidence 345688888777777765432 44567899999999999999999876421 2668999998876311
Q ss_pred ---c---cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEE
Q 002068 326 ---A---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (973)
Q Consensus 326 ---~---~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~ 386 (973)
. .+.|....+ ...+ . ...+++|||||++.|. .+.+..|..+++.+ +++
T Consensus 214 lfg~~~~~~~~~~~~~-~g~~---~-~a~~gtl~ld~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 214 LFGHEKGAFTGAQTLR-QGLF---E-RANEGTLLLDEIGEMP--------LVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred hcCCCCCCCCCCCCCC-CCce---E-ECCCCEEEEechhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 0 000100000 0011 1 1245699999999998 45677777776543 479
Q ss_pred EEEccCchHHH--hhhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 387 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 387 iI~at~~~~~~--~~~~~d~al~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
+|++|+.+.-. .--.+.+.+..|+..+.+..|+..+|.+ +++.++.++...++ +.++++++..+..+.
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 357 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS 357 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCC
Confidence 99999876321 1113456677788777777777665543 44555655544332 457888887776554
No 443
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.58 E-value=7.2e-08 Score=111.99 Aligned_cols=150 Identities=21% Similarity=0.283 Sum_probs=94.8
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE--------------
Q 002068 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD-------------- 318 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-------------- 318 (973)
.|.+++|+...++.+.- ......+++|+||||+|||++++.++..+........+....++++-
T Consensus 189 d~~~v~Gq~~~~~al~l--aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI--TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhhe--eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 67788999876666533 33455789999999999999999999876432221122222222221
Q ss_pred --------cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------
Q 002068 319 --------MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------- 383 (973)
Q Consensus 319 --------~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------- 383 (973)
...+++|.. . .-...+. ...+++|||||++.+. ...++.|++.|+.+
T Consensus 267 r~ph~~~s~~~l~GGg~-----~-~~pG~l~----~A~gGvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r~ 328 (506)
T PRK09862 267 RSPHHSASLTAMVGGGA-----I-PGPGEIS----LAHNGVLFLDELPEFE--------RRTLDALREPIESGQIHLSRT 328 (506)
T ss_pred cCCCccchHHHHhCCCc-----e-ehhhHhh----hccCCEEecCCchhCC--------HHHHHHHHHHHHcCcEEEecC
Confidence 011111110 0 0001122 2245799999998876 56778888888655
Q ss_pred --------CEEEEEccCchHHHhh----------------hccCHHHHccCc-eEEecCCCHHH
Q 002068 384 --------ELRCIGATTLDEYRKY----------------IEKDPALERRFQ-QVYVDQPNVED 422 (973)
Q Consensus 384 --------~i~iI~at~~~~~~~~----------------~~~d~al~~Rf~-~i~~~~p~~~e 422 (973)
++++|+|+|+.+...+ -.+.+++++||+ .|.++.|+.++
T Consensus 329 g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 4689999998752111 147789999999 68999888763
No 444
>PRK12377 putative replication protein; Provisional
Probab=98.58 E-value=1e-07 Score=101.31 Aligned_cols=114 Identities=20% Similarity=0.315 Sum_probs=68.2
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc--c-cchHHHHHHHHHHHHHHhCCCeEE
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--Y-RGEFEDRLKAVLKEVTESEGQIIL 352 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~--~-~g~~e~~l~~~~~~~~~~~~~~IL 352 (973)
..+++|+||||||||+||.++++.+... +..++.+...++...-+ + .+. ....+++.+. ..-+|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l~---~~dLL 167 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQELC---KVDLL 167 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHhc---CCCEE
Confidence 4689999999999999999999998543 55667776666543211 0 011 1123344442 23499
Q ss_pred EEccccccccCCCCCchhhHHHHHhhhhcC---CCEEEEEccCch--HHHhhhccCHHHHccC
Q 002068 353 FIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLD--EYRKYIEKDPALERRF 410 (973)
Q Consensus 353 fiDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~i~iI~at~~~--~~~~~~~~d~al~~Rf 410 (973)
+|||++..... ......|..+++. ....+|.+||.. ++.. .+...+.+|+
T Consensus 168 iIDDlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 168 VLDEIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGERVMDRM 222 (248)
T ss_pred EEcCCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH--HhhHHHHHHH
Confidence 99999765422 2234456666642 235567778854 3322 2345666665
No 445
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.4e-07 Score=97.59 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=85.3
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh-----h--hcCCCCCcccccccchhhHHHHh---
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-----R--LIGAPPGYVGYEEGGQLTEVVRR--- 749 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~-----~--l~G~~~g~~g~~~~~~l~~~~~~--- 749 (973)
..+||+||+|+||..+|.++|+.+.+.+.. -.|+....=..+. + ++......++.++...+.+.+..
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 369999999999999999999999764322 1233321100000 0 11111112232333334433332
Q ss_pred --CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHH
Q 002068 750 --RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 827 (973)
Q Consensus 750 --~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~ 827 (973)
..+.|++||++|+++....|.||..+|+ ...+++||++|+.
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~-------------------------- 127 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRN-------------------------- 127 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECC--------------------------
Confidence 3468999999999999999999999998 5678999998886
Q ss_pred HHHHHhccChhhhcccceEEEcCCC
Q 002068 828 MDAARSIFRPEFMNRVDEYIVFQPL 852 (973)
Q Consensus 828 ~~~l~~~f~p~ll~R~d~~i~f~~l 852 (973)
...+-|.+++|+ ..+.|+++
T Consensus 128 ----~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 128 ----ENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred ----hHhCchHhhhhe-eeeecCCh
Confidence 334677889999 67888887
No 446
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.53 E-value=3.9e-06 Score=88.47 Aligned_cols=132 Identities=27% Similarity=0.366 Sum_probs=79.9
Q ss_pred EEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccc
Q 002068 682 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761 (973)
Q Consensus 682 ~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid 761 (973)
-.+.||+|||||+..+.+|+.+ +.+++.++|++-.+...++++ +.+.+.. +++++|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~ri---------------l~G~~~~--GaW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSRI---------------LKGLAQS--GAWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHHH---------------HHHHHHH--T-EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHHH---------------HHHHhhc--Cchhhhhhhh
Confidence 5689999999999999999999 889999999998766555433 3334443 4699999999
Q ss_pred ccCHHHHHHHHHhhc-------CC--eEecCCCcEEecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHH
Q 002068 762 KAHSDVFNVFLQILD-------DG--RVTDSQGRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (973)
Q Consensus 762 ~l~~~v~~~Ll~~le-------~g--~~~~~~g~~v~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 831 (973)
+++.+++..+.+.+. .+ .+.. .|..+... ++-+.+|.|++.. +
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~------g-------------------- 147 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYA------G-------------------- 147 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CC------C--------------------
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccC------C--------------------
Confidence 999987777655543 22 2222 35566654 6667789998531 1
Q ss_pred HhccChhhhcccceEEEcCCCCHHHHHHHH
Q 002068 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSIV 861 (973)
Q Consensus 832 ~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~ 861 (973)
...+++.|..-| +.|.+..|+...+.++.
T Consensus 148 r~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 148 RSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp C--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred cccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 112344444444 56777778766665554
No 447
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.53 E-value=1.4e-06 Score=103.11 Aligned_cols=184 Identities=21% Similarity=0.276 Sum_probs=115.2
Q ss_pred CCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc-----
Q 002068 254 LDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA----- 326 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~----- 326 (973)
...++|....+..+.+.+.+ ....++++.|++||||+++|+++...... .+.+++.+||..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~l 205 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESEL 205 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHh
Confidence 34588888777777766533 34457899999999999999999886422 26789999987762100
Q ss_pred --cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEcc
Q 002068 327 --KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGAT 391 (973)
Q Consensus 327 --~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~at 391 (973)
...|.+............ ...++.|||||++.|. .+.+..|..+++.+ ++++|++|
T Consensus 206 fg~~~~~~~~~~~~~~g~~~-~a~~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~ 276 (463)
T TIGR01818 206 FGHEKGAFTGANTRRQGRFE-QADGGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAAT 276 (463)
T ss_pred cCCCCCCCCCcccCCCCcEE-ECCCCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeC
Confidence 000000000000000011 1235789999999997 45666777777644 46899998
Q ss_pred CchHHH--hhhccCHHHHccCceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccCHHHHHHHHHh
Q 002068 392 TLDEYR--KYIEKDPALERRFQQVYVDQPN----VEDTISILRGLRERYELHHG---VRISDSALVEAAIL 453 (973)
Q Consensus 392 ~~~~~~--~~~~~d~al~~Rf~~i~~~~p~----~~e~~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~ 453 (973)
+.+.-. ..-.+.+.|..|+..+.+..|+ .++...+++.++..+...++ ..++++++..+..+
T Consensus 277 ~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 277 HQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred CCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 866421 1112446777888755555555 45666666777766655444 46889988887766
No 448
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.3e-06 Score=93.56 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc----------ceEEeccccccchhhhh
Q 002068 656 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----------ALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 656 ~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~----------~~~~i~~~~~~~~~~~~ 725 (973)
.+++.+.+.++..+ -...+||+|+.|+||+.+|+.+++.+++... .++.++..
T Consensus 3 ~~~~~l~~~i~~~~--------l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~--------- 65 (299)
T PRK07132 3 NWIKFLDNSATQNK--------ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF--------- 65 (299)
T ss_pred hHHHHHHHHHHhCC--------CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---------
Confidence 34556666665322 1126889999999999999999999854211 11122100
Q ss_pred hhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
| +..+.++...+.+.+. ..++.|++||++|++....+|.|+..||+ ...+++||++|+
T Consensus 66 ---g---~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~ 128 (299)
T PRK07132 66 ---D---KDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTK 128 (299)
T ss_pred ---C---CcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeC
Confidence 1 0111111112222221 13567999999999999999999999998 456888888776
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
. ...+-|.+.+|+ .++.|.|++.+++.+.+..
T Consensus 129 ~------------------------------~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 129 N------------------------------INKVLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred C------------------------------hHhChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 4 123556788999 8999999999998876654
No 449
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.50 E-value=3.4e-07 Score=97.11 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=69.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+|+||||||+|+.+|++.+...+..++.++.+++....... +.. . ... ...+...+.. ..+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~--~~~-~---~~~-~~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT--FSN-S---ETS-EEQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH--Hhh-c---ccc-HHHHHHHhcc--CCEEEEeCC
Confidence 699999999999999999999997667778888777764321110 100 0 000 0123333443 459999999
Q ss_pred cccC--HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 761 d~l~--~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+... ......|.++++... . .+.-+|+|||...+.+
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry-~---------~~~~tiitSNl~~~~l 209 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS-S---------SKRPTGMLTNSNMEEM 209 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-h---------CCCCEEEeCCCCHHHH
Confidence 8765 335567888887521 1 1234889999965444
No 450
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.49 E-value=3.8e-07 Score=96.75 Aligned_cols=123 Identities=15% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchH---HHHHHHHHHHHHHhCCCeEEE
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF---EDRLKAVLKEVTESEGQIILF 353 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~---e~~l~~~~~~~~~~~~~~ILf 353 (973)
.+++|+|+||||||+|+.+++..+... +..++.+++..+...-+ +.+ ......+++.+. ..-+|+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~--~~~~~~~~~~~~~l~~l~---~~dlLv 167 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMK--DTFSNSETSEEQLLNDLS---NVDLLV 167 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHH--HHHhhccccHHHHHHHhc---cCCEEE
Confidence 578999999999999999999998543 56777777766653211 110 111223444443 234999
Q ss_pred EccccccccCCCCCchhhHHHHHhhhhc---CCCEEEEEccCchH--HHhhhccCHHHHccCc-----eEEecCCC
Q 002068 354 IDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDE--YRKYIEKDPALERRFQ-----QVYVDQPN 419 (973)
Q Consensus 354 iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~i~iI~at~~~~--~~~~~~~d~al~~Rf~-----~i~~~~p~ 419 (973)
|||++..... .-...+|..+++ ..+..+|.+||... +.+ .++..+.+|+. .|.|..+|
T Consensus 168 IDDig~~~~s------~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~--~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 168 IDEIGVQTES------RYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK--LLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred EeCCCCCCCC------HHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH--HhChHHHHHHHHCCceEEEeeCCc
Confidence 9999876421 112234555554 22456667777543 333 23566666662 35555444
No 451
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.49 E-value=5.9e-07 Score=99.67 Aligned_cols=107 Identities=15% Similarity=0.305 Sum_probs=71.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||+||.+||+.+...+..+++++..++........+ . ...+.......+..++ +|+||++
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~------~~~~~~~~~~~l~~~D--LLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-N------NDKELEEVYDLLINCD--LLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-c------cchhHHHHHHHhccCC--EEEEecc
Confidence 69999999999999999999999877778888888776543211110 0 0000011134444554 9999999
Q ss_pred cc--cCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 761 EK--AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 761 d~--l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
.. ..+..++.|+++++.... .+.-+|+|||..++.+
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~el 293 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLL----------RQKKMIISTNLSLEEL 293 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHH
Confidence 54 467788899999975321 1223889999865443
No 452
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.48 E-value=1.2e-06 Score=91.26 Aligned_cols=95 Identities=24% Similarity=0.223 Sum_probs=73.9
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-CEEEEEccCch-------HHHhhhccCHHHHccCceEEecCCCH
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 420 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~i~iI~at~~~-------~~~~~~~~d~al~~Rf~~i~~~~p~~ 420 (973)
|+||||||+|.|- .+...+|.+.++.. ..++|.+||.- .|..-..++-.|..|+-.|...+++.
T Consensus 289 pGVLFIDEvHMLD--------IEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD--------IECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhhh--------hHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 6799999999986 67788899888743 34455566542 23233467888999998888888999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcc
Q 002068 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 421 ~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
++..+||+.-+. ..++.++++++..+.....
T Consensus 361 ~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 361 EDIKKILRIRCQ----EEDVEMNPDALDLLTKIGE 391 (454)
T ss_pred HHHHHHHHhhhh----hhccccCHHHHHHHHHhhh
Confidence 999999988776 3689999999998887753
No 453
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=9.9e-07 Score=84.65 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=80.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHh---CCCeEEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR---RPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~---~~~~Vl~l 757 (973)
.+++.||.|||||++++.+++.+. ....++++++.+........ ..+...+.+ ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD---------------PDLLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh---------------hhhHHHHHHhhccCCcEEEE
Confidence 589999999999999999998885 34678899988764421100 001122221 24579999
Q ss_pred ccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccCh
Q 002068 758 DEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 837 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p 837 (973)
|||+.++ ++...+..+.|.+ .++.||+|+...... ......
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l--------------------------~~~~~~ 108 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL--------------------------SKDIAE 108 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH--------------------------hhcccc
Confidence 9999997 5777777777753 345566666542111 112344
Q ss_pred hhhcccceEEEcCCCCHHHH
Q 002068 838 EFMNRVDEYIVFQPLDRDQI 857 (973)
Q Consensus 838 ~ll~R~d~~i~f~~l~~~~l 857 (973)
.|.+|. ..+.+.|++..|+
T Consensus 109 ~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 109 SLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred cCCCeE-EEEEECCCCHHHh
Confidence 677888 5789999997764
No 454
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.47 E-value=3.6e-07 Score=98.02 Aligned_cols=107 Identities=20% Similarity=0.367 Sum_probs=73.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||.||-+|++.+...+..++.+...++......+ +.. |. ....+...+... .||+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~--~~~-----~~-~~~~l~~~l~~~--dlLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA--FDE-----GR-LEEKLLRELKKV--DLLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--Hhc-----Cc-hHHHHHHHhhcC--CEEEEecc
Confidence 799999999999999999999998667888888888876542111 110 10 012334444444 49999999
Q ss_pred ccc--CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 761 EKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 761 d~l--~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
... .....+.+++++..... .... |+|||...+.+.+
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFGEWDE 215 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChHHHHh
Confidence 874 46677888888765221 1223 9999997665544
No 455
>PRK09183 transposase/IS protein; Provisional
Probab=98.45 E-value=1.9e-07 Score=100.65 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=68.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH--hCCCeEEEEc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR--RRPYAVILFD 758 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~--~~~~~Vl~lD 758 (973)
+++|+||||||||+||.+|+......+..+..+++.++......... . +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~-----------~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQR-----------Q-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHH-----------C-CcHHHHHHHHhcCCCEEEEc
Confidence 69999999999999999999887555566777776665432111100 0 11112221 2344699999
Q ss_pred ccccc--CHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 759 EIEKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 759 Eid~l--~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
|++.. +.+..+.|+++++... .+.-+|+|||.....+.+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~~w~~ 212 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFGQWDQ 212 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHHHHHH
Confidence 99874 4566778999987521 112378899997766544
No 456
>PRK08181 transposase; Validated
Probab=98.41 E-value=1.2e-06 Score=94.31 Aligned_cols=130 Identities=14% Similarity=0.210 Sum_probs=73.1
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
...|++|+||||||||+|+.+++..+... +..++.+++..+...-+ ....+......++.+.. .-+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~-~a~~~~~~~~~l~~l~~---~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQ-VARRELQLESAIAKLDK---FDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHH-HHHhCCcHHHHHHHHhc---CCEEEE
Confidence 45689999999999999999999987443 56677777665543110 00001112234444432 349999
Q ss_pred ccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch--HHHhhhc---cCHHHHccC----ceEEecCCC
Q 002068 355 DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD--EYRKYIE---KDPALERRF----QQVYVDQPN 419 (973)
Q Consensus 355 DEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~--~~~~~~~---~d~al~~Rf----~~i~~~~p~ 419 (973)
||++.+.... .....+.+++....+++ .+|.+||.+ +|...+. +..++.+|+ ..|.+...|
T Consensus 174 DDlg~~~~~~--~~~~~Lf~lin~R~~~~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 174 DDLAYVTKDQ--AETSVLFELISARYERR--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred eccccccCCH--HHHHHHHHHHHHHHhCC--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 9998875331 11223444454444443 456666644 3433331 224556665 235555444
No 457
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=3e-06 Score=99.42 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=114.6
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhcc----CC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSR----RT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~----~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
.+|.++|+|.+++++.-+.+-+..|-..|.. .. ..-+||+|||||||||+++.||+++ +..+.+-
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEEe
Confidence 4789999999999998887655555544432 22 2235789999999999999999998 3333332
Q ss_pred -Eccccc----ccccccc------hHHHH---HHHH-HHHHHH----------hCCCeEEEEccccccccCCCCCchhhH
Q 002068 318 -DMGALI----AGAKYRG------EFEDR---LKAV-LKEVTE----------SEGQIILFIDEIHTVVGAGATNGAMDA 372 (973)
Q Consensus 318 -~~~~~~----~g~~~~g------~~e~~---l~~~-~~~~~~----------~~~~~ILfiDEi~~l~~~~~~~~~~~~ 372 (973)
+...+. ....+.+ ++..+ +..+ +...+. ...+.||+|||+-.++... ....
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f 152 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRF 152 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHH
Confidence 111100 0000111 11111 1111 111111 1235699999998776432 2456
Q ss_pred HHHHhhhhcCC---CEEEEEccC--c---hHHHh-----hhccCHHHHc--cCceEEecCCCHHHHHHHHHHHHHHHhhh
Q 002068 373 GNLLKPMLGRG---ELRCIGATT--L---DEYRK-----YIEKDPALER--RFQQVYVDQPNVEDTISILRGLRERYELH 437 (973)
Q Consensus 373 ~~~L~~~l~~g---~i~iI~at~--~---~~~~~-----~~~~d~al~~--Rf~~i~~~~p~~~e~~~il~~~~~~~~~~ 437 (973)
.++|+.++..+ .+++|.+-+ . ..+.. .--+++.+.. ++..|.|.+-...-..+.|..++......
T Consensus 153 ~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 153 REALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 67788777643 445555411 0 11100 0124577776 45679999989988888888888754211
Q ss_pred -cCC-cc--CHHHHHHHHHhccccc
Q 002068 438 -HGV-RI--SDSALVEAAILSDRYI 458 (973)
Q Consensus 438 -~~v-~i--~~~~l~~l~~~s~~~i 458 (973)
.+. .. ....++.++..|.+-|
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s~GDI 257 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESSNGDI 257 (519)
T ss_pred hcCCccCCChHHHHHHHHHhcCchH
Confidence 111 22 2345777777775444
No 458
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.41 E-value=2.5e-06 Score=109.66 Aligned_cols=134 Identities=22% Similarity=0.241 Sum_probs=84.5
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc------cc--cccccchHHHHHHHHHHHHHH
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL------IA--GAKYRGEFEDRLKAVLKEVTE 345 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~------~~--g~~~~g~~e~~l~~~~~~~~~ 345 (973)
.++-++||.||.|+|||.++..+|+.. +..+++++--.. +. -....|++.-+-..++..++
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr- 506 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALR- 506 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHH-
Confidence 344589999999999999999999998 777777763222 21 11123443333334555543
Q ss_pred hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCE-------E--------EEEccCchH--HHhhhccCHHHHc
Q 002068 346 SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGEL-------R--------CIGATTLDE--YRKYIEKDPALER 408 (973)
Q Consensus 346 ~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i-------~--------iI~at~~~~--~~~~~~~d~al~~ 408 (973)
.++.+|+||++... .++.++|.++++..+= + .+.+|-.++ |.....+..+|.+
T Consensus 507 --~G~~~vlD~lnla~--------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~ 576 (1856)
T KOG1808|consen 507 --NGDWIVLDELNLAP--------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN 576 (1856)
T ss_pred --hCCEEEeccccccc--------hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc
Confidence 35689999999876 5677888888864211 1 223333333 3333345577778
Q ss_pred cCceEEecCCCHHHHHHHHH
Q 002068 409 RFQQVYVDQPNVEDTISILR 428 (973)
Q Consensus 409 Rf~~i~~~~p~~~e~~~il~ 428 (973)
||..+.|..-..++...|+.
T Consensus 577 rf~e~~f~~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 577 RFIELHFDDIGEEELEEILE 596 (1856)
T ss_pred cchhhhhhhcCchhhhhhhc
Confidence 88777777766666666654
No 459
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.39 E-value=3.7e-06 Score=98.84 Aligned_cols=174 Identities=16% Similarity=0.226 Sum_probs=114.1
Q ss_pred CCCCchHHHHHHHHHhc--cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHH
Q 002068 256 PVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 333 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~--~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e 333 (973)
.++|....+..++..+. .....+++++|++||||+++|+++...... .+.+++.+||+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~-------- 204 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNES-------- 204 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHH--------
Confidence 47788777777765442 244567899999999999999999876522 2578999999865310
Q ss_pred HHHHH-HHH---------------HHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------C
Q 002068 334 DRLKA-VLK---------------EVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (973)
Q Consensus 334 ~~l~~-~~~---------------~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~ 384 (973)
.+.. +|. .+. ...+++|||||||.|. .+.+..|..+++.+ +
T Consensus 205 -~~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~gtl~ldei~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 205 -LLESELFGHEKGAFTGADKRREGRFV-EADGGTLFLDEIGDIS--------PMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred -HHHHHhcCCCCCCcCCCCcCCCCcee-ECCCCEEEEeccccCC--------HHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 1111 111 011 1246799999999998 45677777777654 4
Q ss_pred EEEEEccCchHHHh--hhccCHHHHccCceEEecCCCHHHH----HHHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 385 LRCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDT----ISILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 385 i~iI~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
+++|++|+.+.... .-.+.+.|..||..+.+..|+..+| ..+++.++.++...++ ..++++++..+..+.
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 67999988775421 1124566677887777777776654 4455666665544332 357888887776654
No 460
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=4.8e-06 Score=90.28 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=96.6
Q ss_pred chHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------cCCCeEEEEEcccccc
Q 002068 260 RDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------LMNRKLISLDMGALIA 324 (973)
Q Consensus 260 ~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~~~~l~~~~~~~ 324 (973)
+...++.+...+.+++..| .||+|| +||+++|+.+|+.+.+.+.... ..+-.++.+...
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---- 80 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---- 80 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC----
Confidence 4556777777776666555 589996 6899999999999977542110 112233333221
Q ss_pred cccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhh
Q 002068 325 GAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 399 (973)
Q Consensus 325 g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~ 399 (973)
|. .-..+.++.+...+... ++.-|++||++|.|. ..+.|.|+..+|.. +.++|..|+..+
T Consensus 81 ~~---~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~---- 145 (290)
T PRK07276 81 GQ---VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN---- 145 (290)
T ss_pred CC---cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh----
Confidence 10 11234566666665542 345699999999998 56888888888843 577888777765
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHH
Q 002068 400 IEKDPALERRFQQVYVDQPNVEDTISIL 427 (973)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~p~~~e~~~il 427 (973)
.+-|.++|||+.|.|+. +.++..+++
T Consensus 146 -~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 146 -KVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred -hCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 57899999999999965 555544444
No 461
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=8.5e-07 Score=85.28 Aligned_cols=97 Identities=20% Similarity=0.347 Sum_probs=65.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCC-----CcceEEeccccccchhhh----hhhcCCCCCc--ccccccchhhHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDMSEYMEKHAV----SRLIGAPPGY--VGYEEGGQLTEVVRR 749 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~-----~~~~~~i~~~~~~~~~~~----~~l~G~~~g~--~g~~~~~~l~~~~~~ 749 (973)
.++++||||+|||++++.+++.+... ..+++.+++......... ...+|.+... ....-...+...+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 69999999999999999999987421 467788888776633222 2333433222 111111344555666
Q ss_pred CCCeEEEEcccccc-CHHHHHHHHHhhcC
Q 002068 750 RPYAVILFDEIEKA-HSDVFNVFLQILDD 777 (973)
Q Consensus 750 ~~~~Vl~lDEid~l-~~~v~~~Ll~~le~ 777 (973)
....+|+|||+|.+ +..+++.|..+++.
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE 114 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC
Confidence 66679999999999 99999999998884
No 462
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=7.7e-06 Score=89.48 Aligned_cols=172 Identities=12% Similarity=0.040 Sum_probs=109.5
Q ss_pred HHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCC---CCcccCCCeEEEEEcccccccccccchHHHHHHH
Q 002068 263 EIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGD---VPQALMNRKLISLDMGALIAGAKYRGEFEDRLKA 338 (973)
Q Consensus 263 ~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~---~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~ 338 (973)
.++.+.+.+..+...|+ ||+|+.|+||+++++.+++.+.+.. +...-....+..+|.. |. . -..+.++.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~-~--i~vd~Ir~ 76 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DK-D--LSKSEFLS 76 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CC-c--CCHHHHHH
Confidence 34555566655555555 6999999999999999999985532 1111011123333311 10 0 11234556
Q ss_pred HHHHHHHh----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCce
Q 002068 339 VLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQ 412 (973)
Q Consensus 339 ~~~~~~~~----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~ 412 (973)
+.+.+... ++.-|++||+++.+. ..++|.|+..++. ..+.+|..|+... .+-|.+++||+.
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~~ 143 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQV 143 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeEE
Confidence 66665433 256799999999886 5578888888874 4677777776553 567899999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHH
Q 002068 413 VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLV 471 (973)
Q Consensus 413 i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ll 471 (973)
+.|.+|+.++..+.|.. . .++++....++.++.+ |.+|..++
T Consensus 144 ~~f~~l~~~~l~~~l~~--------~--~~~~~~a~~~a~~~~~-------~~~a~~~~ 185 (299)
T PRK07132 144 FNVKEPDQQKILAKLLS--------K--NKEKEYNWFYAYIFSN-------FEQAEKYI 185 (299)
T ss_pred EECCCCCHHHHHHHHHH--------c--CCChhHHHHHHHHcCC-------HHHHHHHH
Confidence 99999999987655532 1 2455555555555531 45666654
No 463
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.34 E-value=2.8e-06 Score=90.22 Aligned_cols=189 Identities=20% Similarity=0.358 Sum_probs=96.5
Q ss_pred ccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhh-----
Q 002068 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR----- 726 (973)
Q Consensus 652 ~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~----- 726 (973)
+|.+..++.|.+.+... +..+++++||.|+|||++.+.+.+.+...+...+.+++..-........
T Consensus 2 ~gR~~el~~l~~~l~~~---------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESG---------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh---------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 57777777777766531 1126999999999999999999998843332333333322211111111
Q ss_pred --------hcCCC-CCcc-----------cccccchhhHHHHhC-CCeEEEEccccccC------HHHHHHHHHhhcCCe
Q 002068 727 --------LIGAP-PGYV-----------GYEEGGQLTEVVRRR-PYAVILFDEIEKAH------SDVFNVFLQILDDGR 779 (973)
Q Consensus 727 --------l~G~~-~g~~-----------g~~~~~~l~~~~~~~-~~~Vl~lDEid~l~------~~v~~~Ll~~le~g~ 779 (973)
.++.. ++.. .......+.+.+.+. ...||+|||++.+. +.....|.+.++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 01110 1000 011112233444433 34899999999988 577788888886511
Q ss_pred EecCCCcEEeccCEE-EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHH
Q 002068 780 VTDSQGRTVSFTNTV-IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQIS 858 (973)
Q Consensus 780 ~~~~~g~~v~~~~~i-iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~ 858 (973)
...+.. |+++|+.+. .. .+.. -.+++.+|+.. +.++|++.++..
T Consensus 153 ---------~~~~~~~v~~~S~~~~---~~---------------------~~~~-~~~~~~~~~~~-~~l~~l~~~e~~ 197 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSDSL---ME---------------------EFLD-DKSPLFGRFSH-IELKPLSKEEAR 197 (234)
T ss_dssp -----------TTEEEEEEESSHHH---HH---------------------HTT--TTSTTTT---E-EEE----HHHHH
T ss_pred ---------ccCCceEEEECCchHH---HH---------------------Hhhc-ccCccccccce-EEEeeCCHHHHH
Confidence 123444 444444211 00 0011 13458899976 999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 859 SIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 859 ~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
+++...+.+ . ..+.++++.++.+...
T Consensus 198 ~~~~~~~~~-------~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 198 EFLKELFKE-------L-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp HHHHHHHHC-------C-------HHHHHHHHHH
T ss_pred HHHHHHHHH-------h-hcccCCHHHHHHHHHH
Confidence 998886643 1 2234588888888774
No 464
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.33 E-value=2.7e-06 Score=94.45 Aligned_cols=127 Identities=21% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc---ccchHHHHHHHHHHHHHHhCCCeEE
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK---YRGEFEDRLKAVLKEVTESEGQIIL 352 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~---~~g~~e~~l~~~~~~~~~~~~~~IL 352 (973)
..+++|+||||||||+|+.++|+.+... +..++.++...+..... +.... .....++.+... -+|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~---DLL 250 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINC---DLL 250 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccC---CEE
Confidence 3789999999999999999999998543 66788887766543111 00100 111113434322 299
Q ss_pred EEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch--HHHhhhccCHHHHccCc----eEEecCCC
Q 002068 353 FIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD--EYRKYIEKDPALERRFQ----QVYVDQPN 419 (973)
Q Consensus 353 fiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~--~~~~~~~~d~al~~Rf~----~i~~~~p~ 419 (973)
+|||++...... .....+.+++...+..+. .+|.+||.. ++.. .+++.+.+|+. .|.|...+
T Consensus 251 IIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 251 IIDDLGTEKITE--FSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred EEeccCCCCCCH--HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHHHcCCEEEEecCcC
Confidence 999998764221 122334455555555554 455566643 3322 24577888873 34554433
No 465
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.32 E-value=7.1e-06 Score=89.70 Aligned_cols=207 Identities=16% Similarity=0.236 Sum_probs=125.6
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc--------
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME-------- 720 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~-------- 720 (973)
..++|.++.+.++.+.++.+..|+. .++. .++|.||+|+|||++++.|-+.+-. .++..+..+.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~-~~kr--Il~L~GPvg~GKSsl~~~Lk~~le~--y~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLE-ERKR--ILLLLGPVGGGKSSLAELLKRGLEE--YPIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccC-ccce--EEEEECCCCCCHHHHHHHHHHHhhe--EEEEEecCCccccChhhhCCH
Confidence 4799999999999999998887765 4444 4999999999999999999988821 1222221111100
Q ss_pred -------------------hhhhhhh----cCC----------------------CCCcccccccchh------------
Q 002068 721 -------------------KHAVSRL----IGA----------------------PPGYVGYEEGGQL------------ 743 (973)
Q Consensus 721 -------------------~~~~~~l----~G~----------------------~~g~~g~~~~~~l------------ 743 (973)
++....| -|. .|+.....+...+
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~ 215 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEY 215 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhh
Confidence 0000001 000 0110000000011
Q ss_pred ----------hHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCC
Q 002068 744 ----------TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 744 ----------~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
.+.+..+..|++=|=|+-|++.+++..||.+.++|.+....+...-.-+.+||+.||.. ++..
T Consensus 216 s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i~~D~liiAhsNe~--E~~~----- 288 (358)
T PF08298_consen 216 SESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMIPFDELIIAHSNEE--EYNK----- 288 (358)
T ss_pred ccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCcccccccceeEEecCCHH--HHHH-----
Confidence 12334445567767788899999999999999999887632222223468999999961 1111
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC-HHHHHHHHHHHHHHHHHHHHhcCC-ceecCHHHHHHHHh
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQLDRVQKRIADRKM-KMQVTDAAIQLLGS 891 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~-~~~l~~I~~~~l~~~~~~~~~~~~-~l~~~~~a~~~L~~ 891 (973)
.......++|.+|+ .+|.+|... -.+=.+|.++.+.+ ..+ ...+.|.+++.++.
T Consensus 289 ----------------f~~~~~~eAf~DRi-~~I~VPY~L~~s~E~kIY~k~~~~-------s~l~~~h~aP~~L~~aA~ 344 (358)
T PF08298_consen 289 ----------------FKNNKNNEAFKDRI-EVIKVPYCLRVSEEVKIYEKLIGK-------SDLRDAHIAPHTLEMAAR 344 (358)
T ss_pred ----------------Hhccccchhhhhhe-EEEeccccCCHHHHHHHHHHHhhh-------ccccccccCchHHHHHHH
Confidence 11122346899999 788888744 44555677766632 222 46788888877765
No 466
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=2e-05 Score=87.65 Aligned_cols=204 Identities=15% Similarity=0.170 Sum_probs=122.9
Q ss_pred CCCCCchHHHHHHHHHh----ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc-c-
Q 002068 255 DPVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK-Y- 328 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l----~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~-~- 328 (973)
..++||+.++..+-+.+ ......++.+.|-||+|||.+...+...+... ......+++|+.++..... |
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-----cccceeEEEeeccccchHHHHH
Confidence 34899999988887765 44567788999999999999998777665322 2234567888776421110 0
Q ss_pred ------------cchHHHHHHHHHHH-HHHhCCCeEEEEccccccccCCCCCchhhHHHH--HhhhhcCCCEEEEEccCc
Q 002068 329 ------------RGEFEDRLKAVLKE-VTESEGQIILFIDEIHTVVGAGATNGAMDAGNL--LKPMLGRGELRCIGATTL 393 (973)
Q Consensus 329 ------------~g~~e~~l~~~~~~-~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~--L~~~l~~g~i~iI~at~~ 393 (973)
.|.. ......|.. ........|+++||+|.|.... ..+.-. ..+.+-..++++||.+|.
T Consensus 225 kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----~~vLy~lFewp~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----QTVLYTLFEWPKLPNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcc-----cceeeeehhcccCCcceeeeeeehhh
Confidence 1111 122222222 2222346899999999998432 112111 123334668999999998
Q ss_pred hHHHhhhccCHHHHccCc----eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHH
Q 002068 394 DEYRKYIEKDPALERRFQ----QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (973)
Q Consensus 394 ~~~~~~~~~d~al~~Rf~----~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ 469 (973)
-++...+- |.|..|+. .+.|++++.++..+||..-+... .-..+-+.+++.+++-...-.++ -.+|.|
T Consensus 299 lDlTdR~L--prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~---~t~~~~~~Aie~~ArKvaa~SGD---lRkaLd 370 (529)
T KOG2227|consen 299 LDLTDRFL--PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE---STSIFLNAAIELCARKVAAPSGD---LRKALD 370 (529)
T ss_pred hhHHHHHh--hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---cccccchHHHHHHHHHhccCchh---HHHHHH
Confidence 87654332 55555542 47889999999999997766532 23344455666655443322222 126666
Q ss_pred HHHHHHhh
Q 002068 470 LVDEAAAK 477 (973)
Q Consensus 470 lld~a~~~ 477 (973)
+...|+.-
T Consensus 371 v~R~aiEI 378 (529)
T KOG2227|consen 371 VCRRAIEI 378 (529)
T ss_pred HHHHHHHH
Confidence 66555443
No 467
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=2e-06 Score=82.62 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc------------ccc--cchHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------------AKY--RGEFEDRLKAVL 340 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g------------~~~--~g~~e~~l~~~~ 340 (973)
....++++||||+|||++++.+++.+.....+.. +.+++.+++...... ... ..........+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4467899999999999999999998743100000 456777775544210 000 112233333344
Q ss_pred HHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCc
Q 002068 341 KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 393 (973)
Q Consensus 341 ~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~ 393 (973)
+.+.. ....+|+|||+|.+. . ....+.|+.+.++..+.+|.++++
T Consensus 81 ~~l~~-~~~~~lviDe~~~l~-~------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDR-RRVVLLVIDEADHLF-S------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHH-CTEEEEEEETTHHHH-T------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHh-cCCeEEEEeChHhcC-C------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 44433 334699999999985 1 567788888888888888888776
No 468
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.31 E-value=1.6e-06 Score=96.29 Aligned_cols=189 Identities=18% Similarity=0.239 Sum_probs=112.6
Q ss_pred HHHhhccccccchHHHHHHHHHHHH-HHccCCCC--CCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 643 LEEELHKRVVGQDPAVKSVAEAIQR-SRAGLSDP--HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 643 l~~~l~~~v~Gq~~~i~~l~~~i~~-~~~~~~~~--~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
+...+--.|+|.+++++++.=.+-- .+.-+.+. .+.--++||.|.|||.|+.|.+.+-+.. .-.+++ ....-.
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs---PIaVYT-SGKGSS 400 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS---PIAVYT-SGKGSS 400 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC---ceEEEe-cCCCcc
Confidence 3344566799999888877544321 11111111 1222379999999999999999888765 111111 111000
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEec-cCEEEEE
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTVIIM 797 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~-~~~iiI~ 797 (973)
.......++-.+.+-.-|.+|| ++.-+.++|++|||+||+.++-.-++-.+||..++.... |-+..+ ++|-|++
T Consensus 401 AAGLTASV~RD~~tReFylEGG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLA 476 (729)
T KOG0481|consen 401 AAGLTASVIRDPSTREFYLEGG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLA 476 (729)
T ss_pred cccceeeEEecCCcceEEEecc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhh
Confidence 0000111222222212233333 455678899999999999999888999999988877655 544444 4777889
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHH
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQ 856 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~ 856 (973)
+.|+-...+.+... .++ .=.|.|.+++|||.++.+..--.++
T Consensus 477 AANpvfGRyDd~Kt----~~d-------------NIDf~~TILSRFDmIFIVKD~h~~~ 518 (729)
T KOG0481|consen 477 AANPVFGRYDDTKT----GED-------------NIDFMPTILSRFDMIFIVKDEHDEE 518 (729)
T ss_pred hcCCccccccccCC----ccc-------------ccchhhhHhhhccEEEEEeccCcch
Confidence 99984433322210 000 1137889999999998888765443
No 469
>PF05729 NACHT: NACHT domain
Probab=98.29 E-value=7.3e-06 Score=82.05 Aligned_cols=146 Identities=20% Similarity=0.295 Sum_probs=84.7
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccc---c-------chHHHHHHHHHHHHHHhCC
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY---R-------GEFEDRLKAVLKEVTESEG 348 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~---~-------g~~e~~l~~~~~~~~~~~~ 348 (973)
++++|+||+|||++++.++..+.....+... ..-++.+.+......... . ..........+..+....+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5799999999999999999998776533211 112334444333221110 0 0011111112223333466
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcC---CCEEEEEccCchHHHhhhccCHHHHccC---ceEEecCCCHHH
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYRKYIEKDPALERRF---QQVYVDQPNVED 422 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~i~iI~at~~~~~~~~~~~d~al~~Rf---~~i~~~~p~~~e 422 (973)
.++|+||.+|.+.......+.......|..++.. .++.+|.++++..+ +.+.+++ ..+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF-------PDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH-------HHHHHhcCCCcEEEECCCCHHH
Confidence 8899999999998643221222344455555543 45777777776654 2244433 457888889999
Q ss_pred HHHHHHHHHH
Q 002068 423 TISILRGLRE 432 (973)
Q Consensus 423 ~~~il~~~~~ 432 (973)
..++++....
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 8888876543
No 470
>PHA00729 NTP-binding motif containing protein
Probab=98.28 E-value=3.5e-06 Score=87.39 Aligned_cols=127 Identities=12% Similarity=0.181 Sum_probs=73.5
Q ss_pred HHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcC--CCC----cccCCCeEEEEEcccccccccccchHHHHHHH
Q 002068 265 RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG--DVP----QALMNRKLISLDMGALIAGAKYRGEFEDRLKA 338 (973)
Q Consensus 265 ~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~--~~p----~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~ 338 (973)
+.+++.+......|++|+|+||||||++|.+|++.+... .+. ....+...+.++...+ ...++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~L----------l~~L~~ 75 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDA----------LEKIQD 75 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHH----------HHHHHH
Confidence 445565656666799999999999999999999987310 000 0011222333333222 122222
Q ss_pred HHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCceEEecCC
Q 002068 339 VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQP 418 (973)
Q Consensus 339 ~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p 418 (973)
.+.. .....+|+|||+..-.... . .-.+ ....++.+.+++++|++.+.|..+
T Consensus 76 a~~~---~~~~dlLIIDd~G~~~~~~------~-------wh~~------------~~~~yf~L~~aLrSR~~l~il~~l 127 (226)
T PHA00729 76 AIDN---DYRIPLIIFDDAGIWLSKY------V-------WYED------------YMKTFYKIYALIRTRVSAVIFTTP 127 (226)
T ss_pred HHhc---CCCCCEEEEeCCchhhccc------c-------hhhh------------ccchHHHHHHHHHhhCcEEEEecC
Confidence 2211 1112388999985443110 0 0000 011234677999999999999999
Q ss_pred CHHHHHHHHHH
Q 002068 419 NVEDTISILRG 429 (973)
Q Consensus 419 ~~~e~~~il~~ 429 (973)
+.++..+.|+.
T Consensus 128 s~edL~~~Lr~ 138 (226)
T PHA00729 128 SPEDLAFYLRE 138 (226)
T ss_pred CHHHHHHHHHh
Confidence 99998877754
No 471
>PRK06921 hypothetical protein; Provisional
Probab=98.27 E-value=8.1e-07 Score=96.07 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=65.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCC-CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 759 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 759 (973)
+++|+||||||||+|+.+|++.+... +..++++...++.... ...+ .........+..+ .+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~---------~~~~~~~~~~~~~--dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDF---------DLLEAKLNRMKKV--EVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHH---------HHHHHHHHHhcCC--CEEEEec
Confidence 79999999999999999999998654 5666777665543221 0001 0001122333334 5999999
Q ss_pred ccc-------cCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 760 IEK-------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 760 id~-------l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
++. +....+..|+.+++.... .+.-+|+|||..+..+.
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~~----------~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRYL----------NHKPILISSELTIDELL 230 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHh
Confidence 944 445566788888875211 11236889998665543
No 472
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.26 E-value=2.5e-06 Score=94.04 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=69.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||+|||||+||.+|++.+...+.++..+.++++..... ..++.. ........+..++ ||+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk--~~~~~~-------~~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK--NSISDG-------SVKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH--HHHhcC-------cHHHHHHHhcCCC--EEEEecC
Confidence 6999999999999999999999977677778888777654321 112110 0123344455554 9999999
Q ss_pred cc--cCHHHHHHHHH-hhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 761 EK--AHSDVFNVFLQ-ILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 761 d~--l~~~v~~~Ll~-~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
.. +.+.+.+.++. +++.. +. .+--.|+|||...+.+.+
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R-~~---------~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR-MQ---------EELPTFFTSNFDFDELEH 267 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH-HH---------CCCeEEEECCCCHHHHHH
Confidence 75 44555545555 44531 10 123478999997665544
No 473
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.7e-06 Score=91.36 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=64.8
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc---ccchHHHHHHHHHHHHHHhCCCeE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK---YRGEFEDRLKAVLKEVTESEGQII 351 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~---~~g~~e~~l~~~~~~~~~~~~~~I 351 (973)
...|++|+||||||||.||-+|+.++... |..++.+..++++..-+ ..|..+.++.. .+.. .-+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~---~l~~---~dl 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLR---ELKK---VDL 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHH---Hhhc---CCE
Confidence 66799999999999999999999999632 67888888777653211 11333333322 2322 229
Q ss_pred EEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 352 LFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 352 LfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
|+|||+....... .....+..++....++... |.++|.+
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 9999998765221 1123334445555556656 6666654
No 474
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.26 E-value=6.1e-06 Score=95.28 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=42.6
Q ss_pred cCCCCCCCCchHHHHHHHHHhc------cCCCCCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 251 AGKLDPVIGRDDEIRRCIQILS------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~------~~~~~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
..-|++++|.++.+.++++.|. ...+.-++|+||||+|||+||+.|++.+..
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468889999999999999882 223345689999999999999999998843
No 475
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=9.7e-06 Score=85.64 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=85.6
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCc------------ccCCCeEEEEEcccccccccccchHHHHHHHHHH
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ------------ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLK 341 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~------------~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~ 341 (973)
..++..||+||+|+||..+|..+|+.+.+.+... ...+-.++.+.... ..-..+.++++.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-------~~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-------NPIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-------ccCCHHHHHHHHH
Confidence 3455679999999999999999999997643111 01112233321110 0112334555555
Q ss_pred HHHHh----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchHHHhhhccCHHHHccCceEEe
Q 002068 342 EVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYV 415 (973)
Q Consensus 342 ~~~~~----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~ 415 (973)
.+... ++.-|++||++|.|. ..++|.|+..+|. .++.+|..|+..+ .+-|.++|||+.+.|
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~ 144 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVV 144 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeec
Confidence 54321 245799999999998 6688999999984 4778888888776 688999999999888
Q ss_pred cCCC
Q 002068 416 DQPN 419 (973)
Q Consensus 416 ~~p~ 419 (973)
+.+.
T Consensus 145 ~~~~ 148 (261)
T PRK05818 145 LSKE 148 (261)
T ss_pred CChh
Confidence 7763
No 476
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=1.7e-05 Score=89.69 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=103.8
Q ss_pred hhcHHHHHhcCCCCCCCCchHHHHHHHHHhc-----cCC-CCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeE
Q 002068 242 GKDLTAMASAGKLDPVIGRDDEIRRCIQILS-----RRT-KNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (973)
Q Consensus 242 ~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~-----~~~-~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (973)
...|.++|+|.+.+++--+.+-|..+-+.|. ... +++ +||+||+||||||.++.|++++ |..+
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~ 138 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQL 138 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Ccee
Confidence 3468999999999998766654444444333 222 233 4789999999999999999998 5554
Q ss_pred EEEE-------cccc---ccccc-ccchHHHHHHHHHHHHHH-----------hCCCeEEEEccccccccCCCCCchhhH
Q 002068 315 ISLD-------MGAL---IAGAK-YRGEFEDRLKAVLKEVTE-----------SEGQIILFIDEIHTVVGAGATNGAMDA 372 (973)
Q Consensus 315 ~~l~-------~~~~---~~g~~-~~g~~e~~l~~~~~~~~~-----------~~~~~ILfiDEi~~l~~~~~~~~~~~~ 372 (973)
++-. ...+ ..+.+ +.+..-..++.....+.. ...+.+|+|||+-..+... .....
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f 215 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETF 215 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHH
Confidence 4322 0111 11111 111111111222222211 1235689999998777442 22345
Q ss_pred HHHHhhhhcCCCEEEEEc-c------CchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh
Q 002068 373 GNLLKPMLGRGELRCIGA-T------TLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE 435 (973)
Q Consensus 373 ~~~L~~~l~~g~i~iI~a-t------~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~ 435 (973)
.+.|..+...|.+.+|.. | +...|+.+ -.|-...-|+..|.|.+-...-..+.|..++....
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~ 284 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEA 284 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhc
Confidence 667776666665443332 2 22334332 22333444777899999888888888888887543
No 477
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=1.3e-06 Score=89.27 Aligned_cols=48 Identities=33% Similarity=0.602 Sum_probs=33.6
Q ss_pred CCCCchHHHHHHHHHhc---cCCCCCceEECCCCCcHHHHHHHHHHHHhcC
Q 002068 256 PVIGRDDEIRRCIQILS---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQG 303 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~---~~~~~~~LL~GppG~GKT~la~~la~~l~~~ 303 (973)
+++||+++++++...+. ...+++++++|++|+|||++++.+.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999983 3445678999999999999999999888543
No 478
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.22 E-value=5.1e-06 Score=88.80 Aligned_cols=179 Identities=15% Similarity=0.243 Sum_probs=114.5
Q ss_pred CCCCCCCchHHHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-------
Q 002068 253 KLDPVIGRDDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI------- 323 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~------- 323 (973)
.|+.+|+....++.++....+- --.+.|+.|++||||-.+|++-...-..+ +.+|+.+||.++-
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~-------~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRH-------SKPFLALNCASLPEDAAESE 274 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCccc-------CCCeeEeecCCCchhHhHHH
Confidence 4777899999999888875442 23567899999999999999766554333 6789999998772
Q ss_pred -ccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEE
Q 002068 324 -AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIG 389 (973)
Q Consensus 324 -~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~ 389 (973)
.|.. .| .+.-+.+|+.+ .++-+|+|||..++ ...+.-|++++..| ++++|+
T Consensus 275 lFG~a-pg--~~gk~GffE~A----ngGTVlLDeIgEmS--------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 275 LFGHA-PG--DEGKKGFFEQA----NGGTVLLDEIGEMS--------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred HhcCC-CC--CCCccchhhhc----cCCeEEeehhhhcC--------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 1111 11 11123455544 34577999999987 55778888888765 788999
Q ss_pred ccCchHH--HhhhccCHHHHccCceEEecCCCHHHHHHHH----HHHHHHHhhhcCC---ccCHHHHHHHHHh
Q 002068 390 ATTLDEY--RKYIEKDPALERRFQQVYVDQPNVEDTISIL----RGLRERYELHHGV---RISDSALVEAAIL 453 (973)
Q Consensus 390 at~~~~~--~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il----~~~~~~~~~~~~v---~i~~~~l~~l~~~ 453 (973)
||..+-- -..-+.-..+.-|+..+.+..|+..|+..-+ +.+..+.-...++ .++++.+.++.++
T Consensus 340 atq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 9876531 1111222455558887888888766654433 4444433333333 4566666555443
No 479
>PRK06526 transposase; Provisional
Probab=98.22 E-value=2.1e-06 Score=92.01 Aligned_cols=124 Identities=23% Similarity=0.352 Sum_probs=68.3
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc---cccchHHHHHHHHHHHHHHhCCCeE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---KYRGEFEDRLKAVLKEVTESEGQII 351 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~---~~~g~~e~~l~~~~~~~~~~~~~~I 351 (973)
...|++|+||||||||+||.+|+..+... +..++.+.+..++... ...|. +...+..+ ...-+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~~----~~~~l~~l---~~~dl 162 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAGR----LQAELVKL---GRYPL 162 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcCc----HHHHHHHh---ccCCE
Confidence 45689999999999999999999988543 4455555444432111 01121 12222322 23459
Q ss_pred EEEccccccccCCCCCchhhHHHHHhhhh----cCCCEEEEEccCch--HHHhhhccCH----HHHccC----ceEEecC
Q 002068 352 LFIDEIHTVVGAGATNGAMDAGNLLKPML----GRGELRCIGATTLD--EYRKYIEKDP----ALERRF----QQVYVDQ 417 (973)
Q Consensus 352 LfiDEi~~l~~~~~~~~~~~~~~~L~~~l----~~g~i~iI~at~~~--~~~~~~~~d~----al~~Rf----~~i~~~~ 417 (973)
|+|||++.+... ....+.|..++ +++ .+|.+||.+ +|...+. |+ ++.+|+ ..|.+..
T Consensus 163 LIIDD~g~~~~~------~~~~~~L~~li~~r~~~~--s~IitSn~~~~~w~~~~~-d~~~a~ai~dRl~~~~~~i~~~g 233 (254)
T PRK06526 163 LIVDEVGYIPFE------PEAANLFFQLVSSRYERA--SLIVTSNKPFGRWGEVFG-DDVVAAAMIDRLVHHAEVISLKG 233 (254)
T ss_pred EEEcccccCCCC------HHHHHHHHHHHHHHHhcC--CEEEEcCCCHHHHHHHcC-ChHHHHHHHHHHhcCceEEeecC
Confidence 999999987532 22333444444 344 355566543 3444332 32 345554 2455555
Q ss_pred CCHH
Q 002068 418 PNVE 421 (973)
Q Consensus 418 p~~~ 421 (973)
++..
T Consensus 234 ~s~R 237 (254)
T PRK06526 234 DSYR 237 (254)
T ss_pred CCcc
Confidence 5443
No 480
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.21 E-value=4.2e-05 Score=88.99 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=138.0
Q ss_pred hccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc-------CCCcceEEecccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-------NTEEALVRIDMSEYM 719 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~-------~~~~~~~~i~~~~~~ 719 (973)
+.+.+.+.+.....|...++..- .. ....+.+.+.|-||||||..+..+-+.|- .....++.||.-.+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i---~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFI---SD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhc---CC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 56677788877788877776432 21 12222689999999999999999988773 234557788887777
Q ss_pred chhhhhh-----hcCCCCCcccccccchhhHHHH--------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCc
Q 002068 720 EKHAVSR-----LIGAPPGYVGYEEGGQLTEVVR--------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 720 ~~~~~~~-----l~G~~~g~~g~~~~~~l~~~~~--------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
....+.. +-|...+.. .-.+++. ..+.+||+|||.|.+-..-|+.|+.+++--....
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~------~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~---- 539 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWD------AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKN---- 539 (767)
T ss_pred CHHHHHHHHHHhcccCcccHH------HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCC----
Confidence 6654432 222221110 1111111 3456899999999998888999999998633222
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCCHHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~~~~l~~I~~~~l 865 (973)
...+||+.+|.-. . + .+.|.+-.-+|++. -|.|.||+.+++.+|+...|
T Consensus 540 ----sKLvvi~IaNTmd-----------l----P-----------Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 540 ----SKLVVIAIANTMD-----------L----P-----------ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred ----CceEEEEeccccc-----------C----H-----------HHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 3566777777510 0 1 11122223356654 69999999999999999888
Q ss_pred HHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 866 DRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 866 ~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
..+ -.|+.+|++.++++-..-...+|....++.++.+-
T Consensus 590 ~~~----------~~f~~~aielvarkVAavSGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 590 KGL----------DAFENKAIELVARKVAAVSGDARRALDICRRAAEI 627 (767)
T ss_pred cch----------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 542 34688888888886433334477777777775543
No 481
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=2.8e-05 Score=74.75 Aligned_cols=143 Identities=20% Similarity=0.281 Sum_probs=77.6
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCC--C-----Ccc-----cCCCeEEEEEcccc------cccc----cc---cc
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGD--V-----PQA-----LMNRKLISLDMGAL------IAGA----KY---RG 330 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~--~-----p~~-----l~~~~~~~l~~~~~------~~g~----~~---~g 330 (973)
.-.+.++|+||+||||++.-++..+.+.. + |+- ..|.+++.++-..- -.+. +| ..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 34688999999999999999999985542 1 111 11222222221000 0000 11 12
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCH---HHH
Q 002068 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP---ALE 407 (973)
Q Consensus 331 ~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~---al~ 407 (973)
.+++..-..++.|..... +++||||.-|--. +..+...+..++..++. +|++-... ..+| .++
T Consensus 85 ~le~i~~~al~rA~~~aD--vIIIDEIGpMElk-----s~~f~~~ve~vl~~~kp-liatlHrr------sr~P~v~~ik 150 (179)
T COG1618 85 GLEEIAIPALRRALEEAD--VIIIDEIGPMELK-----SKKFREAVEEVLKSGKP-LIATLHRR------SRHPLVQRIK 150 (179)
T ss_pred HHHHHhHHHHHHHhhcCC--EEEEecccchhhc-----cHHHHHHHHHHhcCCCc-EEEEEecc------cCChHHHHhh
Confidence 344444445555554433 8899999877522 14455667777777765 56654332 1233 333
Q ss_pred ccCceEEecCCCHHHHHHHHHHHHHHH
Q 002068 408 RRFQQVYVDQPNVEDTISILRGLRERY 434 (973)
Q Consensus 408 ~Rf~~i~~~~p~~~e~~~il~~~~~~~ 434 (973)
+++..+.| .+++.+-.|+..++..+
T Consensus 151 ~~~~v~v~--lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF--LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE--EccchhhHHHHHHHHHh
Confidence 45544443 55555557777666643
No 482
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.20 E-value=2.8e-06 Score=98.22 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc--------cccc
Q 002068 258 IGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI--------AGAK 327 (973)
Q Consensus 258 iG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~--------~g~~ 327 (973)
++.+..++.++..+.+ ...-++++.|+|||||-.+++++.+.-. ...+++.+||..+- .|+
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~--------~~gpfvAvNCaAip~~liesELFGy- 386 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE--------AAGPFVAVNCAAIPEALIESELFGY- 386 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc--------ccCCeEEEEeccchHHhhhHHHhcc-
Confidence 4677777777776654 3345789999999999999999998752 36689999987652 111
Q ss_pred ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------------CEEEEEccCchH
Q 002068 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ELRCIGATTLDE 395 (973)
Q Consensus 328 ~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------~i~iI~at~~~~ 395 (973)
..|.+.....+-.........++.||+|||..|. .+++..|++++..| +|++|+||+.+-
T Consensus 387 ~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p--------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl 458 (606)
T COG3284 387 VAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMP--------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL 458 (606)
T ss_pred CccccccchhccccccceecCCCccHHHHhhhch--------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH
Confidence 1122222211111111112346799999999987 66788888888765 678999988763
Q ss_pred HHhhh---ccCHHHHccCceEEecCCCHHHH---HHHHHHHHHHHhhhcCCccCHHHHHHHHHh
Q 002068 396 YRKYI---EKDPALERRFQQVYVDQPNVEDT---ISILRGLRERYELHHGVRISDSALVEAAIL 453 (973)
Q Consensus 396 ~~~~~---~~d~al~~Rf~~i~~~~p~~~e~---~~il~~~~~~~~~~~~v~i~~~~l~~l~~~ 453 (973)
.... .+-..|.=|+....|..|+..+| ...|..+..+... ....++++++..+..+
T Consensus 459 -~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 459 -AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAY 520 (606)
T ss_pred -HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhC
Confidence 2211 11233344777677777766554 4455555555443 5678899998777554
No 483
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.18 E-value=0.00023 Score=87.87 Aligned_cols=140 Identities=18% Similarity=0.239 Sum_probs=85.5
Q ss_pred CCCCCceEECCCCCcHHHHHH-HHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH--h----
Q 002068 274 RTKNNPVLIGEPGVGKTAISE-GLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE--S---- 346 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~-~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~--~---- 346 (973)
...++++++||||+|||+|.. +|-.++ ...++.+|.+.-.. ++..+.-+-..... .
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~-------T~s~ls~Ler~t~yy~~tg~~ 1554 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTM-------TPSKLSVLERETEYYPNTGVV 1554 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccC-------CHHHHHHHHhhceeeccCCeE
Confidence 456789999999999999753 333333 45677776543221 11122222111111 0
Q ss_pred -------CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-C-------------CEEEEEccCchHHHhhhccCHH
Q 002068 347 -------EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-G-------------ELRCIGATTLDEYRKYIEKDPA 405 (973)
Q Consensus 347 -------~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-g-------------~i~iI~at~~~~~~~~~~~d~a 405 (973)
-...|||.|||. ++.+..-+..++.-+|++++++ | ++.+.|++|+..-.........
T Consensus 1555 ~l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1555 RLYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 113599999998 3444444555665667777764 2 7789999998753332333345
Q ss_pred HHccCceEEecCCCHHHHHHHHHHHHH
Q 002068 406 LERRFQQVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 406 l~~Rf~~i~~~~p~~~e~~~il~~~~~ 432 (973)
|.||-..|.+..|+......|...++.
T Consensus 1633 f~r~~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1633 FIRKPVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred HhcCceEEEecCcchhhHHHHHHHHHH
Confidence 555555678889998888888876655
No 484
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.17 E-value=2.4e-05 Score=91.00 Aligned_cols=181 Identities=18% Similarity=0.249 Sum_probs=109.6
Q ss_pred CCCchHHHHHHHHHhcc-----CCCCCceEECCCCCcHHHHHHHHHHHHhc----CCCCcccCCCeEEEEEccccccccc
Q 002068 257 VIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQ----GDVPQALMNRKLISLDMGALIAGAK 327 (973)
Q Consensus 257 iiG~~~~i~~li~~l~~-----~~~~~~LL~GppG~GKT~la~~la~~l~~----~~~p~~l~~~~~~~l~~~~~~~g~~ 327 (973)
+-+|+.+...+-..+.. .....+.+.|-||||||..+..+.+.|.. +++| ...++++|.-.+.....
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p----~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP----KFDYVEINGLRLASPRE 473 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC----CccEEEEcceeecCHHH
Confidence 56888877777665532 22335778999999999999999998853 5555 44677777544421110
Q ss_pred -cc-------ch---HHHHHHHHHHHHH---HhCCCeEEEEccccccccCCCCCchhh-HHHHHh-hhhcCCCEEEEEcc
Q 002068 328 -YR-------GE---FEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMD-AGNLLK-PMLGRGELRCIGAT 391 (973)
Q Consensus 328 -~~-------g~---~e~~l~~~~~~~~---~~~~~~ILfiDEi~~l~~~~~~~~~~~-~~~~L~-~~l~~g~i~iI~at 391 (973)
|. |+ ....+..+-.... .....+||+|||+|.|.... .+ ++|++. +.+...+++||+..
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----QDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----HHHHHHHhcCCcCCCCceEEEEec
Confidence 11 10 1111111111111 12347899999999999543 33 334443 33456788888887
Q ss_pred CchHHHhhhccCHHHHccC--ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHH
Q 002068 392 TLDEYRKYIEKDPALERRF--QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAI 452 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~Rf--~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~ 452 (973)
|.-+.-.. -+.+..-+|+ ++|.|.+++.++..+|+..-+... ..|.+++++.+++
T Consensus 549 NTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aielvar 605 (767)
T KOG1514|consen 549 NTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIELVAR 605 (767)
T ss_pred ccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHHHHH
Confidence 76543211 1334455565 589999999999999987766532 2345566555443
No 485
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.17 E-value=2.4e-06 Score=79.07 Aligned_cols=93 Identities=22% Similarity=0.474 Sum_probs=59.5
Q ss_pred EEeecCCCCcHHHHHHHHHHHhcCC-----CcceEEecc-ccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEE
Q 002068 682 FMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDM-SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVI 755 (973)
Q Consensus 682 ~Ll~Gp~GtGKT~lA~~la~~l~~~-----~~~~~~i~~-~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl 755 (973)
|.|+||||+|||++|+.|++.+... ...++..+. .++ ..||.| ..|+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~------------w~gY~~---------------q~vv 53 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKF------------WDGYQG---------------QPVV 53 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccch------------hhccCC---------------CcEE
Confidence 5789999999999999999888421 011111111 001 012222 1399
Q ss_pred EEccccccCHH----HHHHHHHhhcCCeEecCC----CcEEeccCEEEEEecCC
Q 002068 756 LFDEIEKAHSD----VFNVFLQILDDGRVTDSQ----GRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 756 ~lDEid~l~~~----v~~~Ll~~le~g~~~~~~----g~~v~~~~~iiI~tsN~ 801 (973)
++||+...... ....|+++++...+.-.. .+...|.--+||+|||.
T Consensus 54 i~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 54 IIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 99999887754 788899999877554422 22245566789999984
No 486
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.17 E-value=1.9e-06 Score=97.83 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=91.5
Q ss_pred HHHhhccccccchHHHHHHHHHHHHHHc----cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 643 LEEELHKRVVGQDPAVKSVAEAIQRSRA----GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 643 l~~~l~~~v~Gq~~~i~~l~~~i~~~~~----~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
+...+--.|+|+..++.+++-++-.... +.+.-+.- .++||+|.|||||+.+.+.+++... ..++.-..+.-
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGD-invLL~GDPGTaKSQFLKY~eK~s~---RAV~tTGqGAS 518 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGD-INVLLLGDPGTAKSQFLKYAEKTSP---RAVFTTGQGAS 518 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccc-eeEEEecCCCccHHHHHHHHHhcCc---ceeEeccCCcc
Confidence 3344556799999999888777642111 11111222 3799999999999999999998873 33332111110
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-CcEEecc-CEEEE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-NTVII 796 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-g~~v~~~-~~iiI 796 (973)
.-..+ ......|-+ +.. ..-.+++.-+..+|.+|||+||+...--..+-.+||...+..+. |-...+. .|.+|
T Consensus 519 avGLT-a~v~KdPvt--rEW--TLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvI 593 (854)
T KOG0477|consen 519 AVGLT-AYVRKDPVT--REW--TLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVI 593 (854)
T ss_pred cccee-EEEeeCCcc--cee--eeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhh
Confidence 00000 000000000 000 01123555677889999999999988788888999988777765 4433443 78899
Q ss_pred EecCC
Q 002068 797 MTSNV 801 (973)
Q Consensus 797 ~tsN~ 801 (973)
+++|+
T Consensus 594 AAanP 598 (854)
T KOG0477|consen 594 AAANP 598 (854)
T ss_pred eecCC
Confidence 99998
No 487
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.16 E-value=2.6e-05 Score=92.87 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=112.6
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccccc--chHHHHHHHH---H-HHHHHhCC
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR--GEFEDRLKAV---L-KEVTESEG 348 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~--g~~e~~l~~~---~-~~~~~~~~ 348 (973)
.-.+++|.|++|+||++++++++..+.. ..+|+.+..+.... ... ++++..++.- + -.......
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~~--~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah 93 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIADD--RLLGGLDLAATLRAGRPVAQRGLLAEAD 93 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcHH--HccCCchHHhHhhcCCcCCCCCceeecc
Confidence 3468999999999999999999998732 23455443322111 111 2233322210 0 00001123
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------CEEEEEccCchHHHhhhccCHHHHccCc-e
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-Q 412 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~-~ 412 (973)
++||||||+..+. ..+++.|+..++.| ++.+|++.+..+|. ..+.+++.+||. .
T Consensus 94 ~GvL~lDe~n~~~--------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf~l~ 163 (584)
T PRK13406 94 GGVLVLAMAERLE--------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALADRLAFH 163 (584)
T ss_pred CCEEEecCcccCC--------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhheEEE
Confidence 5799999999987 56888999999876 44567765554554 368899999998 6
Q ss_pred EEecCCCHHHHH-------HHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhhh
Q 002068 413 VYVDQPNVEDTI-------SILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 413 i~~~~p~~~e~~-------~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
|.+..|+..+.. .|. ...+.+ .++.++++.+.+++.++..+--. -+...+.++..|.+.+.+.
T Consensus 164 v~v~~~~~~~~~~~~~~~~~I~-~AR~rl---~~v~v~~~~l~~i~~~~~~~gv~--S~Ra~i~llraARa~AaL~ 233 (584)
T PRK13406 164 LDLDGLALRDAREIPIDADDIA-AARARL---PAVGPPPEAIAALCAAAAALGIA--SLRAPLLALRAARAAAALA 233 (584)
T ss_pred EEcCCCChHHhcccCCCHHHHH-HHHHHH---ccCCCCHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHHHHc
Confidence 889888765432 222 122222 47889999999988887754310 2234555666665555554
No 488
>PF05729 NACHT: NACHT domain
Probab=98.15 E-value=1.3e-05 Score=80.10 Aligned_cols=145 Identities=16% Similarity=0.293 Sum_probs=85.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCC------cceEEeccccccchh---hhhhhcCC-CCCcccccccchhhHHHHhC
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTE------EALVRIDMSEYMEKH---AVSRLIGA-PPGYVGYEEGGQLTEVVRRR 750 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~------~~~~~i~~~~~~~~~---~~~~l~G~-~~g~~g~~~~~~l~~~~~~~ 750 (973)
.++++|+||+|||++++.++..+.... .-.+.+.+..+.... ....++.. .....+... ..+.......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-ELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-HHHHHHHHcC
Confidence 489999999999999999998884322 123455666554432 12222211 111111100 1234455677
Q ss_pred CCeEEEEccccccCHHH--------HHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHH
Q 002068 751 PYAVILFDEIEKAHSDV--------FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYET 822 (973)
Q Consensus 751 ~~~Vl~lDEid~l~~~v--------~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~ 822 (973)
+..+|+||.+|.+.... .+.|.+++... .++++.+|+|+..... ..
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~~~----------------~~ 134 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPRAF----------------PD 134 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCChH----------------HH
Confidence 77899999999887632 33455555431 2345667777776220 00
Q ss_pred HHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHH
Q 002068 823 IKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 823 ~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
+...+... ..+.+.+++.+++.+.++.++.
T Consensus 135 --------~~~~~~~~------~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 135 --------LRRRLKQA------QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred --------HHHhcCCC------cEEEECCCCHHHHHHHHHHHhh
Confidence 11122221 4688999999999999988774
No 489
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.14 E-value=2.2e-06 Score=86.91 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEE
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILf 353 (973)
....|++|+||||||||.||.++++.+... +..++.++.++++..-+.. ........+++.+... -+|+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~-~~~~~~~~~~~~l~~~---dlLi 113 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQS-RSDGSYEELLKRLKRV---DLLI 113 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCC-HCCTTHCHHHHHHHTS---SCEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceecccccc-ccccchhhhcCccccc---cEec
Confidence 345789999999999999999999988553 6678888877764322110 0011122344445432 3899
Q ss_pred EccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchH
Q 002068 354 IDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 395 (973)
Q Consensus 354 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~ 395 (973)
|||+....... .......+++..-.++. .+|.+||...
T Consensus 114 lDDlG~~~~~~--~~~~~l~~ii~~R~~~~--~tIiTSN~~~ 151 (178)
T PF01695_consen 114 LDDLGYEPLSE--WEAELLFEIIDERYERK--PTIITSNLSP 151 (178)
T ss_dssp EETCTSS---H--HHHHCTHHHHHHHHHT---EEEEEESS-H
T ss_pred ccccceeeecc--cccccchhhhhHhhccc--CeEeeCCCch
Confidence 99997543211 11122334444444433 5666888654
No 490
>PRK09183 transposase/IS protein; Provisional
Probab=98.13 E-value=7.7e-06 Score=88.30 Aligned_cols=131 Identities=22% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
...+++|+||||||||+|+.+++..+.. .+..+..+++..+..... .......+..++.... ....+|+|
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~~~~--~~~dlLii 170 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLS-TAQRQGRYKTTLQRGV--MAPRLLII 170 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHH-HHHHCCcHHHHHHHHh--cCCCEEEE
Confidence 3468999999999999999999987633 255676666555432110 0000011223333321 23459999
Q ss_pred ccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch--HHHhhhccC----HHHHccC----ceEEecCCC
Q 002068 355 DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD--EYRKYIEKD----PALERRF----QQVYVDQPN 419 (973)
Q Consensus 355 DEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~--~~~~~~~~d----~al~~Rf----~~i~~~~p~ 419 (973)
||++...... .+.....+++....+++. +|.|||.+ +|...+.-| .++.+|+ ..|.+...|
T Consensus 171 Ddlg~~~~~~--~~~~~lf~li~~r~~~~s--~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s 241 (259)
T PRK09183 171 DEIGYLPFSQ--EEANLFFQVIAKRYEKGS--MILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241 (259)
T ss_pred cccccCCCCh--HHHHHHHHHHHHHHhcCc--EEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence 9998754221 111123333333334554 56666654 344443223 3555665 234555443
No 491
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.12 E-value=0.00011 Score=86.32 Aligned_cols=205 Identities=17% Similarity=0.255 Sum_probs=100.2
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEe-ccccccch-hhhhhhc
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI-DMSEYMEK-HAVSRLI 728 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i-~~~~~~~~-~~~~~l~ 728 (973)
+.-+..-++.|..-+.....+.. +...+||+||||||||++++.||+++ +..+..- +...+... .......
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~----~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~~~~~~d~~ 93 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSS----PKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRESDNQEDDFE 93 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCC----CcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCcccccccccccc
Confidence 33344455555555554332221 11258999999999999999999998 2222211 11110000 0000000
Q ss_pred CCCCC---cccccccchhhHH-H--------------HhCCCeEEEEccccccC----HHHHHHHHHhhcCCeEecCCCc
Q 002068 729 GAPPG---YVGYEEGGQLTEV-V--------------RRRPYAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 729 G~~~g---~~g~~~~~~l~~~-~--------------~~~~~~Vl~lDEid~l~----~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
+.... |.+ ....+.++ + ......||++||+-... ..+.+.|.+.+..++..
T Consensus 94 s~~~~~~~f~s--q~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~----- 166 (519)
T PF03215_consen 94 SDFNKFDEFLS--QSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCL----- 166 (519)
T ss_pred ccccccccccc--hhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCC-----
Confidence 00000 000 00001001 0 11345699999996543 34666666666653311
Q ss_pred EEeccCEEEEEe--cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMT--SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 787 ~v~~~~~iiI~t--sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~~~l~~I~~~ 863 (973)
..|||+| -+...+. ... . -.-.....|++++++... ..|.|+|+...-+.+.+.+
T Consensus 167 -----PlV~iiSe~~~~~~~~--------~~~---~------~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 167 -----PLVFIISETESLSGDN--------SYR---S------NSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred -----CEEEEEecccccCCCC--------ccc---c------cchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHH
Confidence 4556666 1110000 000 0 000123458888886543 4899999999888888887
Q ss_pred HHHHHHHHHHhcCCceecCHHHHHHHHhc
Q 002068 864 QLDRVQKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
.+..-....... ....-..++++.|+..
T Consensus 225 I~~~E~~~~~~~-~~~p~~~~~l~~I~~~ 252 (519)
T PF03215_consen 225 ILKKEARSSSGK-NKVPDKQSVLDSIAES 252 (519)
T ss_pred HHHHHhhhhcCC-ccCCChHHHHHHHHHh
Confidence 765432222111 1222234568888874
No 492
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.11 E-value=1.7e-05 Score=83.67 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=77.7
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEc
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiD 355 (973)
.....++||+|||||+.++.+|+.+ |..++.+++++.+.- ..+.+++..+... +..+.+|
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~~--------~~l~ril~G~~~~--GaW~cfd 91 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMDY--------QSLSRILKGLAQS--GAWLCFD 91 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS-H--------HHHHHHHHHHHHH--T-EEEEE
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEecccccccH--------HHHHHHHHHHhhc--Cchhhhh
Confidence 3456899999999999999999999 999999999876532 3477788777664 5699999
Q ss_pred cccccccCCCCCchhhHHHHHhhhhcC---------------CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCH
Q 002068 356 EIHTVVGAGATNGAMDAGNLLKPMLGR---------------GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNV 420 (973)
Q Consensus 356 Ei~~l~~~~~~~~~~~~~~~L~~~l~~---------------g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~ 420 (973)
|++++...--+.-...+ ..+...+.. ....+..+.| +.|....++++.++.-|.+|.+..|+.
T Consensus 92 efnrl~~~vLS~i~~~i-~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~n-p~y~gr~~LP~nLk~lFRpvam~~PD~ 169 (231)
T PF12774_consen 92 EFNRLSEEVLSVISQQI-QSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMN-PGYAGRSELPENLKALFRPVAMMVPDL 169 (231)
T ss_dssp TCCCSSHHHHHHHHHHH-HHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE--B-CCCC--S-HHHCTTEEEEE--S--H
T ss_pred hhhhhhHHHHHHHHHHH-HHHHHhhcccccccccCCCEEEEccceeEEEeec-cccCCcccCCHhHHHHhheeEEeCCCH
Confidence 99998722100000001 111111111 1233444554 456666689999999999999999998
Q ss_pred HHHHHH
Q 002068 421 EDTISI 426 (973)
Q Consensus 421 ~e~~~i 426 (973)
....++
T Consensus 170 ~~I~ei 175 (231)
T PF12774_consen 170 SLIAEI 175 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775554
No 493
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.10 E-value=2.9e-05 Score=82.88 Aligned_cols=168 Identities=21% Similarity=0.312 Sum_probs=99.4
Q ss_pred CCCCCchHHHHHHHHHh----ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc--------
Q 002068 255 DPVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL-------- 322 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l----~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~-------- 322 (973)
.+++|..++-+.+-+.+ -.+..++++++||.|+|||.+.-..-....+.+ .+.-++.+|..-.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~-----E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENG-----ENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcC-----CeEEEEEECccchhhHHHHHH
Confidence 34677655444444433 236678999999999999998755443321110 1222333432111
Q ss_pred ---------cccccccchHHHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCchhhHHHHHhhhh-cCCCEEEE
Q 002068 323 ---------IAGAKYRGEFEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-GRGELRCI 388 (973)
Q Consensus 323 ---------~~g~~~~g~~e~~l~~~~~~~~~~----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l-~~g~i~iI 388 (973)
..+.+..|.+.+.+..++..+... +.++|+++||+|.+.+.. ...-..|++.-.- .+-.+-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---rQtllYnlfDisqs~r~Picii 175 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---RQTLLYNLFDISQSARAPICII 175 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---hhHHHHHHHHHHhhcCCCeEEE
Confidence 122334466666777777666542 335788888999887432 1122334332222 25688999
Q ss_pred EccCchHHHhhhccCHHHHccCc-e-EEecCC-CHHHHHHHHHHHHH
Q 002068 389 GATTLDEYRKYIEKDPALERRFQ-Q-VYVDQP-NVEDTISILRGLRE 432 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~Rf~-~-i~~~~p-~~~e~~~il~~~~~ 432 (973)
|.|+.-+.-.++ ...+++||. . |.+.++ +..+-..+++.++.
T Consensus 176 g~Ttrld~lE~L--EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 176 GVTTRLDILELL--EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EeeccccHHHHH--HHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 999877654433 478899995 4 666665 67777777776663
No 494
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.10 E-value=0.00022 Score=94.06 Aligned_cols=137 Identities=19% Similarity=0.312 Sum_probs=95.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH----------h
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE----------S 346 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~----------~ 346 (973)
..++++||+|+|||.++.......... .++-++.+...++.. +..++..-.. .
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~---------~~~~~~fs~~ts~~~--------~q~~~~~~~~k~~~~~~~~~~ 190 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDR---------EVYLLNFSSVTSSEL--------LQEIIESKLDKRRSGNYGPPL 190 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccc---------hheEEeeeeeccHHH--------HHHHHHHHHHHhcccCCCCCC
Confidence 789999999999999998877765222 222244444333221 1122211111 1
Q ss_pred CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--------------CEEEEEccCchHHHhhhccCHHHHccCce
Q 002068 347 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPALERRFQQ 412 (973)
Q Consensus 347 ~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~i~iI~at~~~~~~~~~~~d~al~~Rf~~ 412 (973)
....++|+||++.-. .+.-|..+...+++++++-+ ++.+++++++ +......+.+.|.|.|..
T Consensus 191 ~~~~~~f~ddinmp~--~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~-~~~gr~~i~~r~~r~f~~ 267 (1395)
T KOG3595|consen 191 GKKLVLFVDDINMPA--LDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNP-PGGGRNDITERFLRHFLI 267 (1395)
T ss_pred CceeEEEEeccCCch--hhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCC-CCCccCcccHHHHHHeee
Confidence 224599999998643 44456777888888888632 6788999998 445567788999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHH
Q 002068 413 VYVDQPNVEDTISILRGLRER 433 (973)
Q Consensus 413 i~~~~p~~~e~~~il~~~~~~ 433 (973)
+.+..|+.+..-.|...+...
T Consensus 268 ~~~~~~~~~sl~~if~~~~~~ 288 (1395)
T KOG3595|consen 268 VSLNYPSQESLTQIFNTILTG 288 (1395)
T ss_pred EeeCCCChhhHHHHHHHHHhc
Confidence 999999999999998888764
No 495
>PRK06921 hypothetical protein; Provisional
Probab=98.09 E-value=1.6e-05 Score=85.98 Aligned_cols=122 Identities=23% Similarity=0.313 Sum_probs=65.7
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
..++++|+||||||||+|+.++++.+.... +..++.+....+....+ ..+ ......++.+. ..-+|+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l~--~~~-~~~~~~~~~~~---~~dlLiI 183 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDLK--DDF-DLLEAKLNRMK---KVEVLFI 183 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHHH--HHH-HHHHHHHHHhc---CCCEEEE
Confidence 457899999999999999999999984421 45667766544432110 011 11122233332 2349999
Q ss_pred ccccc-cccCCCCC--chhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccC
Q 002068 355 DEIHT-VVGAGATN--GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 410 (973)
Q Consensus 355 DEi~~-l~~~~~~~--~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf 410 (973)
||++. +.+..... ....+.+++.....++.. +|.+||...- ....+++.+.+|+
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~-tIitsn~~~~-el~~~~~~l~sRi 240 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP-ILISSELTID-ELLDIDEALGSRI 240 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHH-HHhhhhhHHHHHH
Confidence 99954 22211111 112344555555554443 4556665431 1223356776664
No 496
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.04 E-value=7.5e-06 Score=90.25 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=61.2
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfi 354 (973)
...+++|+||+|||||.|+.++|..+... +..+..+.++.++..-+.. .....+...++.+.. .-+|+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~-~~~~~~~~~l~~l~~---~dlLiI 223 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNS-ISDGSVKEKIDAVKE---APVLML 223 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHH-HhcCcHHHHHHHhcC---CCEEEE
Confidence 35689999999999999999999999543 5566666666553221100 000112334444432 339999
Q ss_pred ccccccccCCCCCchhhHHHHHhhhhc---CCCEEEEEccCchH
Q 002068 355 DEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDE 395 (973)
Q Consensus 355 DEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~i~iI~at~~~~ 395 (973)
||+..-..+. -....+|..+++ ..+..+|.|||.+.
T Consensus 224 DDiG~e~~s~-----~~~~~ll~~Il~~R~~~~~~ti~TSNl~~ 262 (306)
T PRK08939 224 DDIGAEQMSS-----WVRDEVLGVILQYRMQEELPTFFTSNFDF 262 (306)
T ss_pred ecCCCccccH-----HHHHHHHHHHHHHHHHCCCeEEEECCCCH
Confidence 9997543211 111133444443 23567778888653
No 497
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.03 E-value=0.00026 Score=76.24 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=74.7
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEeccccccch
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSEYMEK 721 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~~~~~~ 721 (973)
....+|...+.+.+...-..... ....++ .++|++|++|.|||++++.+.+.... ...|++.+.+..-.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~--P~~~Rm-p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEY--PKRHRM-PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhC--CcccCC-CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 46778888776665444332221 112232 37999999999999999999976621 1246788887655444
Q ss_pred hhh----hhhcCCCCCccc--ccccchhhHHHHhCCCeEEEEccccccC---HHHHHHHHHhh
Q 002068 722 HAV----SRLIGAPPGYVG--YEEGGQLTEVVRRRPYAVILFDEIEKAH---SDVFNVFLQIL 775 (973)
Q Consensus 722 ~~~----~~l~G~~~g~~g--~~~~~~l~~~~~~~~~~Vl~lDEid~l~---~~v~~~Ll~~l 775 (973)
... -..+|.|-.... ..-..+....++...-.+|+|||++.+- ..-|..++++|
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L 172 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL 172 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH
Confidence 322 233555532211 1111234567778888899999999852 23344444444
No 498
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=2.7e-05 Score=85.81 Aligned_cols=150 Identities=13% Similarity=0.209 Sum_probs=82.5
Q ss_pred chHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------------
Q 002068 260 RDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------------- 324 (973)
Q Consensus 260 ~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~------------- 324 (973)
|+.+++++.+.|.. ....-+.|+|++|+|||+||..+++...... .. + .++.++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~---~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN---RF-D-GVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC---CC-T-EEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc---cc-c-ccccccccccccccccccccccccc
Confidence 57899999999877 4445568999999999999999998742111 11 2 244455332210
Q ss_pred cc----cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchHHHh
Q 002068 325 GA----KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYRK 398 (973)
Q Consensus 325 g~----~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~~~~ 398 (973)
.. ....+.+.....+.+.+ . ..+++|+||+++... .... +...+. ..+..+|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L-~-~~~~LlVlDdv~~~~---------~~~~-l~~~~~~~~~~~kilvTTR~~~v-- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL-K-DKRCLLVLDDVWDEE---------DLEE-LREPLPSFSSGSKILVTTRDRSV-- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH-C-CTSEEEEEEEE-SHH---------HH--------HCHHSS-EEEEEESCGGG--
T ss_pred ccccccccccccccccccchhhh-c-cccceeeeeeecccc---------cccc-ccccccccccccccccccccccc--
Confidence 00 01122333333333333 2 348999999997654 1211 222221 234677777766532
Q ss_pred hhccCHHHHccCceEEecCCCHHHHHHHHHHHHH
Q 002068 399 YIEKDPALERRFQQVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 399 ~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~ 432 (973)
-..+......+.+...+.++..+++.....
T Consensus 142 ----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 142 ----AGSLGGTDKVIELEPLSEEEALELFKKRAG 171 (287)
T ss_dssp ----GTTHHSCEEEEECSS--HHHHHHHHHHHHT
T ss_pred ----cccccccccccccccccccccccccccccc
Confidence 122222245789999999999988876654
No 499
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.01 E-value=1.4e-05 Score=85.59 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=76.0
Q ss_pred hhhcCCCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh--hhcCCccCHHHHHHHHHhcc
Q 002068 378 PMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE--LHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 378 ~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~--~~~~v~i~~~~l~~l~~~s~ 455 (973)
+.+|+|.|++|||||.++| |.++++|++||+.+.+.+++.++...+++..+.... ....+.++++++..++..|.
T Consensus 2 p~vE~G~i~LIGATTENP~---f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~ 78 (300)
T PRK14700 2 PYVESGKIILIGATTENPT---YYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNE 78 (300)
T ss_pred CCccCCcEEEEeecCCCcc---ceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcC
Confidence 5789999999999999998 899999999999999999999999999988776422 12357899999999999997
Q ss_pred cccCCCCCchHHHHHHHHHHh
Q 002068 456 RYISGRFLPDKAIDLVDEAAA 476 (973)
Q Consensus 456 ~~i~~r~~p~~a~~lld~a~~ 476 (973)
+-. ..++++|+.++.
T Consensus 79 GDa------R~aLN~LE~a~~ 93 (300)
T PRK14700 79 GDC------RKILNLLERMFL 93 (300)
T ss_pred CHH------HHHHHHHHHHHh
Confidence 543 267888887663
No 500
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.00 E-value=5.2e-05 Score=87.69 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=105.2
Q ss_pred CCCCchHHHHHHHHHhccC------------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc
Q 002068 256 PVIGRDDEIRRCIQILSRR------------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~------------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 323 (973)
.|.|.++..+-++-.|-.+ .--|+||+|+||||||-+.+.+++.+..|.. ...+|..- +-+...+
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSa--vGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSA--VGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccch--hcceeeE
Confidence 3667777766666655221 1247899999999999999999988744321 01111111 1111111
Q ss_pred ccccccchHHHHHHHHHHH--HHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC---------------CCEE
Q 002068 324 AGAKYRGEFEDRLKAVLKE--VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---------------GELR 386 (973)
Q Consensus 324 ~g~~~~g~~e~~l~~~~~~--~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~---------------g~i~ 386 (973)
. ..+++ ++++-+ +.--.+++|=.|||+|.|..+ ..++|..+|+. -+.-
T Consensus 507 t---rd~dt----kqlVLesGALVLSD~GiCCIDEFDKM~dS--------trSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 507 T---KDPDT----RQLVLESGALVLSDNGICCIDEFDKMSDS--------TRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred E---ecCcc----ceeeeecCcEEEcCCceEEchhhhhhhHH--------HHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 1 11111 111111 000134668899999999733 45567777652 2556
Q ss_pred EEEccCchHH--------HhhhccCHHHHccCceE--EecCCCHHHHHHHHHHHHHHHhhhc----CCccCHHHHHHHHH
Q 002068 387 CIGATTLDEY--------RKYIEKDPALERRFQQV--YVDQPNVEDTISILRGLRERYELHH----GVRISDSALVEAAI 452 (973)
Q Consensus 387 iI~at~~~~~--------~~~~~~d~al~~Rf~~i--~~~~p~~~e~~~il~~~~~~~~~~~----~v~i~~~~l~~l~~ 452 (973)
||+++|+..- -..+.++|.|++||+.| .++.|++..=+.+..++...|.... ..-++-..+...+.
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~ 651 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR 651 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH
Confidence 8999885431 12456889999999954 6777877755666677776544311 12233344555555
Q ss_pred hcccccC
Q 002068 453 LSDRYIS 459 (973)
Q Consensus 453 ~s~~~i~ 459 (973)
++.+.+.
T Consensus 652 yArk~i~ 658 (804)
T KOG0478|consen 652 YARKNIH 658 (804)
T ss_pred HHhccCC
Confidence 5554443
Done!