Query 002068
Match_columns 973
No_of_seqs 598 out of 5098
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 6E-105 2E-109 999.8 81.9 850 78-955 1-850 (854)
2 3pxi_A Negative regulator of g 100.0 4E-97 1E-101 920.3 63.0 750 78-955 1-755 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 7.9E-92 2.7E-96 874.6 68.7 739 83-963 2-756 (758)
4 3pxg_A Negative regulator of g 100.0 1.9E-61 6.3E-66 565.3 38.3 440 78-541 1-445 (468)
5 3cf2_A TER ATPase, transitiona 100.0 5.4E-38 1.8E-42 380.3 21.2 459 253-920 202-704 (806)
6 4fcw_A Chaperone protein CLPB; 100.0 8.7E-36 3E-40 331.1 34.4 306 635-954 3-308 (311)
7 1ypw_A Transitional endoplasmi 100.0 9.1E-31 3.1E-35 323.8 10.9 421 250-866 199-662 (806)
8 3hws_A ATP-dependent CLP prote 99.9 4.5E-27 1.5E-31 266.6 12.3 276 642-935 8-340 (363)
9 1um8_A ATP-dependent CLP prote 99.9 3.8E-24 1.3E-28 243.8 18.9 277 641-935 13-356 (376)
10 3fh2_A Probable ATP-dependent 99.9 5.4E-24 1.9E-28 208.1 16.7 144 77-222 1-145 (146)
11 1khy_A CLPB protein; alpha hel 99.9 1E-23 3.6E-28 206.9 15.1 146 78-223 1-146 (148)
12 2y1q_A CLPC N-domain, negative 99.9 2E-23 6.8E-28 205.4 14.5 144 78-224 1-145 (150)
13 3fes_A ATP-dependent CLP endop 99.9 1.8E-23 6.1E-28 204.0 13.3 139 79-220 4-143 (145)
14 1jbk_A CLPB protein; beta barr 99.9 3.3E-23 1.1E-27 211.7 15.4 193 235-427 2-194 (195)
15 4b4t_J 26S protease regulatory 99.9 3.3E-22 1.1E-26 223.3 23.7 199 252-478 145-369 (405)
16 1ojl_A Transcriptional regulat 99.9 1.8E-22 6.2E-27 222.3 18.7 228 649-912 2-233 (304)
17 2bjv_A PSP operon transcriptio 99.9 4.8E-22 1.6E-26 215.1 20.5 227 648-911 5-237 (265)
18 1ofh_A ATP-dependent HSL prote 99.9 6.3E-22 2.2E-26 219.0 20.9 250 641-935 7-290 (310)
19 4b4t_I 26S protease regulatory 99.9 1.2E-21 4.1E-26 219.0 21.1 199 252-478 179-403 (437)
20 2p65_A Hypothetical protein PF 99.9 2.6E-22 8.9E-27 204.2 14.4 185 235-419 2-187 (187)
21 4b4t_H 26S protease regulatory 99.9 1.8E-21 6.1E-26 219.7 21.2 199 252-478 206-430 (467)
22 1ny5_A Transcriptional regulat 99.9 3.2E-21 1.1E-25 219.6 23.4 268 606-912 97-368 (387)
23 4b4t_M 26S protease regulatory 99.9 1E-21 3.6E-26 222.9 18.8 200 251-478 177-402 (434)
24 1g41_A Heat shock protein HSLU 99.9 3.1E-21 1.1E-25 219.3 21.8 260 642-935 8-424 (444)
25 4b4t_L 26S protease subunit RP 99.9 2.7E-21 9.1E-26 219.7 19.0 199 252-478 178-402 (437)
26 3pxi_A Negative regulator of g 99.9 8.2E-20 2.8E-24 226.5 33.9 178 256-455 492-704 (758)
27 3dzd_A Transcriptional regulat 99.9 3.5E-21 1.2E-25 217.4 18.8 226 649-911 129-358 (368)
28 3zri_A CLPB protein, CLPV; cha 99.9 2.1E-21 7.3E-26 193.0 14.3 141 77-220 19-163 (171)
29 3m6a_A ATP-dependent protease 99.9 4.6E-21 1.6E-25 227.3 19.7 264 612-921 45-321 (543)
30 4b4t_K 26S protease regulatory 99.9 8.7E-21 3E-25 215.2 20.0 199 252-478 169-394 (428)
31 1k6k_A ATP-dependent CLP prote 99.8 3.4E-20 1.2E-24 180.7 12.8 134 83-218 2-139 (143)
32 1r6b_X CLPA protein; AAA+, N-t 99.8 1.2E-18 4.1E-23 216.4 29.9 177 255-454 458-694 (758)
33 3eie_A Vacuolar protein sortin 99.8 3.2E-19 1.1E-23 198.4 21.3 200 250-476 13-233 (322)
34 2qp9_X Vacuolar protein sortin 99.8 3.7E-19 1.3E-23 200.3 20.7 207 244-477 40-267 (355)
35 1xwi_A SKD1 protein; VPS4B, AA 99.8 6.7E-19 2.3E-23 195.5 21.8 200 251-476 8-228 (322)
36 3syl_A Protein CBBX; photosynt 99.8 3.4E-19 1.2E-23 197.1 18.3 222 638-920 20-268 (309)
37 3vfd_A Spastin; ATPase, microt 99.8 3.7E-19 1.3E-23 203.4 18.8 193 244-458 104-318 (389)
38 3pvs_A Replication-associated 99.8 3.3E-19 1.1E-23 205.8 17.5 201 243-479 14-223 (447)
39 3d8b_A Fidgetin-like protein 1 99.8 1.5E-18 5E-23 195.7 20.7 204 245-475 74-299 (357)
40 4b4t_J 26S protease regulatory 99.8 7.6E-19 2.6E-23 196.2 16.8 199 646-915 145-370 (405)
41 3cf2_A TER ATPase, transitiona 99.8 2.8E-19 9.6E-24 216.9 11.7 196 253-476 475-696 (806)
42 3b9p_A CG5977-PA, isoform A; A 99.8 6.2E-18 2.1E-22 185.9 19.9 203 246-475 12-237 (297)
43 3pfi_A Holliday junction ATP-d 99.8 1.1E-17 3.7E-22 187.6 21.7 196 648-911 28-231 (338)
44 4b4t_I 26S protease regulatory 99.8 3.4E-18 1.2E-22 191.2 17.0 198 647-915 180-404 (437)
45 2zan_A Vacuolar protein sortin 99.8 4.9E-18 1.7E-22 196.8 18.9 201 250-476 129-350 (444)
46 4akg_A Glutathione S-transfera 99.8 7.9E-17 2.7E-21 216.4 32.2 453 276-866 1267-1790(2695)
47 4b4t_M 26S protease regulatory 99.8 5.9E-18 2E-22 192.2 16.9 199 647-915 179-403 (434)
48 3h4m_A Proteasome-activating n 99.8 6E-17 2.1E-21 176.8 24.2 201 252-480 14-240 (285)
49 4b4t_H 26S protease regulatory 99.8 1.7E-17 5.9E-22 187.3 19.9 199 647-915 207-431 (467)
50 4b4t_L 26S protease subunit RP 99.7 2.4E-17 8.3E-22 187.3 20.4 198 647-914 179-402 (437)
51 3syl_A Protein CBBX; photosynt 99.7 3.2E-17 1.1E-21 181.2 20.2 209 256-477 32-261 (309)
52 2qz4_A Paraplegin; AAA+, SPG7, 99.7 4.5E-17 1.5E-21 175.4 20.3 201 252-479 3-230 (262)
53 3eie_A Vacuolar protein sortin 99.7 2.6E-17 8.9E-22 183.0 18.2 212 648-921 17-242 (322)
54 3pfi_A Holliday junction ATP-d 99.7 4.6E-17 1.6E-21 182.4 20.3 195 241-479 15-235 (338)
55 3cf0_A Transitional endoplasmi 99.7 9.5E-18 3.2E-22 184.6 14.4 199 251-477 11-235 (301)
56 4b4t_K 26S protease regulatory 99.7 1.5E-17 5E-22 188.8 16.0 198 647-915 170-395 (428)
57 2c9o_A RUVB-like 1; hexameric 99.7 2.5E-18 8.7E-23 200.3 9.2 165 246-426 27-234 (456)
58 3hu3_A Transitional endoplasmi 99.7 3.2E-17 1.1E-21 191.0 17.6 203 248-478 197-422 (489)
59 3u61_B DNA polymerase accessor 99.7 2.6E-17 9E-22 183.3 16.2 197 242-475 13-220 (324)
60 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.5E-16 5.2E-21 176.5 21.1 213 647-920 10-236 (322)
61 2qp9_X Vacuolar protein sortin 99.7 8.9E-17 3E-21 180.9 19.2 212 647-920 49-274 (355)
62 2ce7_A Cell division protein F 99.7 8.2E-17 2.8E-21 185.9 19.0 197 253-478 14-236 (476)
63 2chg_A Replication factor C sm 99.7 3E-16 1E-20 163.8 21.4 199 243-477 5-210 (226)
64 1hqc_A RUVB; extended AAA-ATPa 99.7 2.5E-16 8.5E-21 175.2 19.7 194 648-909 11-213 (324)
65 3cf0_A Transitional endoplasmi 99.7 3.5E-16 1.2E-20 172.1 20.0 206 648-921 14-243 (301)
66 1lv7_A FTSH; alpha/beta domain 99.7 1.1E-16 3.8E-21 172.0 14.7 202 249-479 6-233 (257)
67 2zan_A Vacuolar protein sortin 99.7 5.3E-16 1.8E-20 179.7 21.3 212 648-920 133-358 (444)
68 2chq_A Replication factor C sm 99.7 1.9E-16 6.4E-21 175.6 16.7 198 243-476 5-209 (319)
69 1iqp_A RFCS; clamp loader, ext 99.7 6.3E-16 2.1E-20 172.0 20.7 204 237-476 7-217 (327)
70 3n70_A Transport activator; si 99.7 7.4E-17 2.5E-21 157.4 10.8 143 650-853 2-145 (145)
71 1sxj_D Activator 1 41 kDa subu 99.7 3.9E-16 1.3E-20 175.8 18.3 203 240-477 22-241 (353)
72 3pxg_A Negative regulator of g 99.7 1.2E-15 4E-20 178.0 22.1 173 648-892 179-360 (468)
73 1ofh_A ATP-dependent HSL prote 99.7 9.4E-16 3.2E-20 169.3 19.1 211 256-478 16-273 (310)
74 1sxj_B Activator 1 37 kDa subu 99.7 6.9E-16 2.4E-20 171.3 17.9 197 243-475 9-213 (323)
75 3uk6_A RUVB-like 2; hexameric 99.7 6.9E-16 2.3E-20 174.9 17.3 210 243-480 31-312 (368)
76 1hqc_A RUVB; extended AAA-ATPa 99.7 5.7E-16 2E-20 172.3 15.8 188 247-478 4-218 (324)
77 1qvr_A CLPB protein; coiled co 99.7 8.9E-15 3.1E-19 183.3 28.3 182 256-455 559-799 (854)
78 3vfd_A Spastin; ATPase, microt 99.7 1.2E-15 4.2E-20 174.1 18.6 202 648-910 114-329 (389)
79 3t15_A Ribulose bisphosphate c 99.7 2.2E-16 7.4E-21 172.9 11.3 166 654-865 12-198 (293)
80 1jr3_A DNA polymerase III subu 99.7 3.9E-15 1.3E-19 168.9 21.9 204 243-477 4-227 (373)
81 1g8p_A Magnesium-chelatase 38 99.6 7.2E-16 2.5E-20 173.4 15.4 220 648-909 23-297 (350)
82 1njg_A DNA polymerase III subu 99.6 3.2E-15 1.1E-19 158.1 19.2 204 243-477 11-234 (250)
83 3pvs_A Replication-associated 99.6 6.1E-16 2.1E-20 178.5 14.1 192 648-911 25-219 (447)
84 3d8b_A Fidgetin-like protein 1 99.6 1.9E-15 6.6E-20 170.2 17.9 205 648-915 83-303 (357)
85 2r44_A Uncharacterized protein 99.6 2.8E-15 9.5E-20 167.4 18.6 203 639-892 17-238 (331)
86 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.4E-15 8.1E-20 174.9 18.0 234 637-923 10-271 (500)
87 3u61_B DNA polymerase accessor 99.6 5E-15 1.7E-19 164.8 19.7 189 648-910 25-219 (324)
88 3vkg_A Dynein heavy chain, cyt 99.6 2.7E-15 9.3E-20 202.1 20.4 453 275-866 1303-1827(3245)
89 2r62_A Cell division protease 99.6 3.6E-17 1.2E-21 177.0 2.0 200 251-478 7-233 (268)
90 3b9p_A CG5977-PA, isoform A; A 99.6 2.9E-15 1E-19 164.5 17.3 206 648-913 20-239 (297)
91 2r44_A Uncharacterized protein 99.6 9.4E-16 3.2E-20 171.2 13.4 219 240-481 12-280 (331)
92 1sxj_C Activator 1 40 kDa subu 99.6 3.6E-15 1.2E-19 167.1 17.9 198 242-475 12-216 (340)
93 2qz4_A Paraplegin; AAA+, SPG7, 99.6 7.1E-15 2.4E-19 158.1 19.1 201 648-911 5-226 (262)
94 1sxj_A Activator 1 95 kDa subu 99.6 4E-16 1.4E-20 184.5 9.9 201 242-475 26-256 (516)
95 1lv7_A FTSH; alpha/beta domain 99.6 5.4E-15 1.8E-19 158.8 17.7 201 648-914 11-232 (257)
96 3uk6_A RUVB-like 2; hexameric 99.6 2.9E-15 9.9E-20 169.8 16.1 217 648-912 43-308 (368)
97 1sxj_E Activator 1 40 kDa subu 99.6 2.3E-15 7.9E-20 169.6 15.0 206 244-478 3-244 (354)
98 3t15_A Ribulose bisphosphate c 99.6 1.4E-15 4.7E-20 166.5 12.4 140 275-432 35-199 (293)
99 2ce7_A Cell division protein F 99.6 1.3E-14 4.4E-19 167.5 20.1 196 648-912 15-234 (476)
100 3co5_A Putative two-component 99.6 4.3E-16 1.5E-20 151.5 6.5 138 650-853 5-143 (143)
101 3h4m_A Proteasome-activating n 99.6 6.7E-15 2.3E-19 160.5 16.8 197 648-911 16-235 (285)
102 4akg_A Glutathione S-transfera 99.6 6.1E-14 2.1E-18 188.8 29.3 123 276-427 645-789 (2695)
103 3hu3_A Transitional endoplasmi 99.6 4.4E-15 1.5E-19 173.0 15.7 201 647-915 202-423 (489)
104 2x8a_A Nuclear valosin-contain 99.6 1.3E-14 4.4E-19 157.0 17.4 201 253-477 8-232 (274)
105 2dhr_A FTSH; AAA+ protein, hex 99.6 4.7E-15 1.6E-19 172.2 13.7 199 251-478 27-251 (499)
106 3te6_A Regulatory protein SIR3 99.6 9E-15 3.1E-19 159.8 13.8 212 257-479 22-287 (318)
107 3k1j_A LON protease, ATP-depen 99.6 4E-15 1.4E-19 179.2 12.0 222 648-909 40-350 (604)
108 4fcw_A Chaperone protein CLPB; 99.6 6.5E-14 2.2E-18 154.7 19.5 181 256-454 18-257 (311)
109 3hws_A ATP-dependent CLP prote 99.6 2.5E-14 8.6E-19 161.7 16.5 187 257-454 17-301 (363)
110 2chg_A Replication factor C sm 99.6 5.5E-14 1.9E-18 146.5 17.6 186 648-911 16-208 (226)
111 1d2n_A N-ethylmaleimide-sensit 99.6 5.9E-15 2E-19 159.9 10.4 198 647-911 31-246 (272)
112 2r62_A Cell division protease 99.6 4.1E-15 1.4E-19 160.8 8.5 163 648-865 10-196 (268)
113 1ixz_A ATP-dependent metallopr 99.5 4.3E-14 1.5E-18 151.4 16.0 199 251-478 12-236 (254)
114 3f9v_A Minichromosome maintena 99.5 2.1E-15 7.3E-20 180.2 5.8 236 640-909 286-562 (595)
115 3m6a_A ATP-dependent protease 99.5 2.9E-14 1E-18 169.0 15.5 179 256-455 82-296 (543)
116 3te6_A Regulatory protein SIR3 99.5 2.3E-14 7.8E-19 156.6 13.4 243 649-935 20-306 (318)
117 1um8_A ATP-dependent CLP prote 99.5 9.1E-14 3.1E-18 157.9 18.9 207 256-477 22-338 (376)
118 1in4_A RUVB, holliday junction 99.5 1.6E-13 5.6E-18 153.0 20.5 192 244-479 14-231 (334)
119 2chq_A Replication factor C sm 99.5 6.8E-14 2.3E-18 154.9 16.4 185 648-910 16-207 (319)
120 1iqp_A RFCS; clamp loader, ext 99.5 1E-13 3.5E-18 154.0 17.4 184 648-909 24-214 (327)
121 1d2n_A N-ethylmaleimide-sensit 99.5 6E-14 2E-18 152.0 14.8 196 255-476 33-247 (272)
122 2bjv_A PSP operon transcriptio 99.5 1.4E-13 4.8E-18 148.4 17.2 182 253-453 4-220 (265)
123 1g41_A Heat shock protein HSLU 99.5 1.3E-13 4.3E-18 156.9 17.5 101 349-455 251-382 (444)
124 1ojl_A Transcriptional regulat 99.5 6.8E-14 2.3E-18 153.7 14.8 180 255-454 2-216 (304)
125 2v1u_A Cell division control p 99.5 2.1E-13 7.1E-18 155.2 19.3 215 254-479 18-257 (387)
126 1iy2_A ATP-dependent metallopr 99.5 1.7E-13 5.8E-18 148.9 17.3 199 251-478 36-260 (278)
127 1sxj_D Activator 1 41 kDa subu 99.5 5.2E-14 1.8E-18 158.3 13.4 199 648-910 36-238 (353)
128 1ypw_A Transitional endoplasmi 99.5 1.6E-15 5.3E-20 187.8 0.7 164 252-433 474-663 (806)
129 2qby_B CDC6 homolog 3, cell di 99.5 6E-13 2.1E-17 151.4 21.1 217 245-479 13-253 (384)
130 1g8p_A Magnesium-chelatase 38 99.5 3.2E-14 1.1E-18 159.9 10.3 213 250-480 19-304 (350)
131 2qby_B CDC6 homolog 3, cell di 99.5 2.7E-13 9.1E-18 154.4 17.2 211 648-910 19-248 (384)
132 2dhr_A FTSH; AAA+ protein, hex 99.5 2.3E-13 8E-18 158.0 16.2 197 647-912 29-249 (499)
133 3bos_A Putative DNA replicatio 99.5 3.2E-13 1.1E-17 142.8 15.6 198 248-478 20-224 (242)
134 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.3E-17 149.0 21.5 206 255-478 17-254 (389)
135 1njg_A DNA polymerase III subu 99.5 5.6E-13 1.9E-17 140.7 17.1 198 648-910 22-231 (250)
136 2qby_A CDC6 homolog 1, cell di 99.5 9.3E-13 3.2E-17 149.6 19.7 211 254-479 19-253 (386)
137 1l8q_A Chromosomal replication 99.5 2.5E-13 8.5E-18 151.1 14.5 172 681-913 39-214 (324)
138 1l8q_A Chromosomal replication 99.5 6.1E-13 2.1E-17 147.9 17.3 199 252-477 8-214 (324)
139 3vkg_A Dynein heavy chain, cyt 99.5 4.2E-12 1.4E-16 171.6 27.3 121 278-427 606-749 (3245)
140 1sxj_B Activator 1 37 kDa subu 99.5 7.8E-13 2.7E-17 146.6 17.1 185 648-911 20-213 (323)
141 2x8a_A Nuclear valosin-contain 99.4 6.9E-13 2.4E-17 143.3 15.4 208 647-920 8-239 (274)
142 1jr3_A DNA polymerase III subu 99.4 1.6E-12 5.4E-17 147.3 18.8 200 648-910 15-224 (373)
143 1ixz_A ATP-dependent metallopr 99.4 1.1E-12 3.7E-17 140.4 16.3 197 648-913 15-235 (254)
144 1fnn_A CDC6P, cell division co 99.4 1.9E-12 6.5E-17 147.4 18.6 219 649-911 17-251 (389)
145 1a5t_A Delta prime, HOLB; zinc 99.4 4.2E-12 1.4E-16 141.5 19.0 177 651-892 4-193 (334)
146 3bos_A Putative DNA replicatio 99.4 1.6E-12 5.6E-17 137.4 14.9 166 681-913 54-223 (242)
147 2v1u_A Cell division control p 99.4 5.8E-13 2E-17 151.5 11.8 219 648-911 18-253 (387)
148 2z4s_A Chromosomal replication 99.4 1.4E-12 4.6E-17 150.8 14.9 206 253-480 103-315 (440)
149 3f8t_A Predicted ATPase involv 99.4 2.9E-12 1E-16 144.1 16.8 215 640-892 205-426 (506)
150 1in4_A RUVB, holliday junction 99.4 1.1E-11 3.6E-16 138.3 21.4 193 649-909 25-225 (334)
151 3n70_A Transport activator; si 99.4 6.3E-13 2.2E-17 129.4 10.0 136 256-419 2-143 (145)
152 1iy2_A ATP-dependent metallopr 99.4 4.8E-12 1.6E-16 137.4 17.4 197 648-913 39-259 (278)
153 1sxj_C Activator 1 40 kDa subu 99.4 6.9E-12 2.4E-16 140.3 18.8 170 648-892 24-200 (340)
154 1a5t_A Delta prime, HOLB; zinc 99.4 8E-12 2.7E-16 139.3 18.3 181 260-473 7-207 (334)
155 1sxj_E Activator 1 40 kDa subu 99.4 2.9E-12 9.8E-17 144.2 14.0 197 648-909 13-239 (354)
156 2z4s_A Chromosomal replication 99.4 1.5E-12 5.2E-17 150.4 11.4 175 681-913 132-312 (440)
157 1sxj_A Activator 1 95 kDa subu 99.3 4E-12 1.4E-16 150.2 14.9 202 648-910 38-255 (516)
158 2gno_A DNA polymerase III, gam 99.3 7.1E-12 2.4E-16 137.2 14.4 145 653-865 1-152 (305)
159 3co5_A Putative two-component 99.3 2.9E-13 9.8E-18 131.4 2.8 131 256-419 5-141 (143)
160 1jbk_A CLPB protein; beta barr 99.3 7.8E-13 2.7E-17 134.3 5.3 158 646-861 19-194 (195)
161 3k1j_A LON protease, ATP-depen 99.3 2.5E-11 8.5E-16 146.1 17.1 214 247-480 33-357 (604)
162 2qby_A CDC6 homolog 1, cell di 99.3 1.4E-11 4.8E-16 139.8 12.7 214 648-910 19-248 (386)
163 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 6.9E-11 2.4E-15 137.4 18.6 203 256-481 23-269 (500)
164 2gno_A DNA polymerase III, gam 99.3 3.7E-11 1.3E-15 131.5 14.4 147 259-431 1-152 (305)
165 2p65_A Hypothetical protein PF 99.2 3.1E-11 1.1E-15 121.8 10.3 150 646-853 19-187 (187)
166 1w5s_A Origin recognition comp 99.2 2.5E-10 8.5E-15 131.0 19.2 217 255-478 22-273 (412)
167 2c9o_A RUVB-like 1; hexameric 99.1 3.3E-11 1.1E-15 140.2 6.4 101 646-765 34-140 (456)
168 3f9v_A Minichromosome maintena 99.1 7.6E-11 2.6E-15 140.9 5.9 203 255-477 295-536 (595)
169 1ny5_A Transcriptional regulat 99.0 1.3E-08 4.3E-13 115.6 21.2 181 254-454 136-351 (387)
170 2qen_A Walker-type ATPase; unk 99.0 6.8E-09 2.3E-13 115.9 18.2 182 255-456 12-237 (350)
171 1w5s_A Origin recognition comp 99.0 3.3E-09 1.1E-13 121.6 14.8 207 648-894 21-250 (412)
172 3dzd_A Transcriptional regulat 98.9 7.8E-09 2.7E-13 116.3 16.3 179 255-454 129-342 (368)
173 2fna_A Conserved hypothetical 98.9 9.6E-09 3.3E-13 115.0 16.2 178 255-456 13-241 (357)
174 3fh2_A Probable ATP-dependent 98.9 2.1E-09 7.1E-14 104.4 7.9 100 40-146 46-145 (146)
175 3fes_A ATP-dependent CLP endop 98.9 1.6E-09 5.6E-14 105.0 5.6 98 40-145 47-144 (145)
176 2y1q_A CLPC N-domain, negative 98.7 1.9E-08 6.4E-13 98.1 7.6 99 41-147 46-144 (150)
177 3ec2_A DNA replication protein 98.7 4.1E-08 1.4E-12 98.7 10.2 102 681-803 40-144 (180)
178 3cmw_A Protein RECA, recombina 98.7 2.1E-08 7.1E-13 130.0 9.6 85 681-766 1084-1175(1706)
179 3f8t_A Predicted ATPase involv 98.7 1.1E-07 3.7E-12 107.3 14.0 202 254-481 212-466 (506)
180 2w58_A DNAI, primosome compone 98.7 2.6E-08 8.7E-13 102.2 7.1 107 681-808 56-165 (202)
181 2w58_A DNAI, primosome compone 98.6 5.2E-08 1.8E-12 99.9 8.7 101 247-361 17-128 (202)
182 3ec2_A DNA replication protein 98.6 2.5E-08 8.7E-13 100.3 3.7 134 248-395 3-144 (180)
183 3cmu_A Protein RECA, recombina 98.5 5E-08 1.7E-12 127.7 7.0 83 681-764 1429-1518(2050)
184 2kjq_A DNAA-related protein; s 98.5 7.9E-08 2.7E-12 93.5 6.3 89 681-803 38-126 (149)
185 1k6k_A ATP-dependent CLP prote 98.5 8.1E-08 2.8E-12 92.7 6.4 99 40-142 39-139 (143)
186 2kjq_A DNAA-related protein; s 98.5 8.3E-08 2.9E-12 93.3 6.0 120 258-411 21-140 (149)
187 1khy_A CLPB protein; alpha hel 98.5 1.2E-07 4.1E-12 92.1 6.5 99 40-144 45-143 (148)
188 2qgz_A Helicase loader, putati 98.4 1.6E-07 5.4E-12 103.0 6.2 107 681-808 154-264 (308)
189 2qen_A Walker-type ATPase; unk 98.4 3.3E-06 1.1E-10 94.0 16.8 165 649-865 12-216 (350)
190 1jr3_D DNA polymerase III, del 98.4 1.1E-06 3.8E-11 98.0 12.8 169 274-477 16-191 (343)
191 1jr3_D DNA polymerase III, del 98.3 2.1E-06 7.1E-11 95.7 12.9 160 681-910 20-188 (343)
192 1u0j_A DNA replication protein 98.3 8.8E-07 3E-11 93.5 9.1 132 681-862 106-248 (267)
193 1tue_A Replication protein E1; 98.3 1.5E-06 5.2E-11 87.5 8.8 96 681-803 60-158 (212)
194 2fna_A Conserved hypothetical 98.3 4.6E-06 1.6E-10 93.0 13.6 168 649-866 13-223 (357)
195 2qgz_A Helicase loader, putati 98.3 1E-06 3.4E-11 96.6 7.4 101 249-361 118-227 (308)
196 1tue_A Replication protein E1; 98.2 1.2E-06 4.2E-11 88.2 7.1 120 264-419 45-180 (212)
197 2r2a_A Uncharacterized protein 98.2 3E-06 1E-10 86.3 8.9 132 278-419 7-154 (199)
198 3zri_A CLPB protein, CLPV; cha 98.2 6.7E-06 2.3E-10 81.3 10.8 63 159-222 24-87 (171)
199 1ye8_A Protein THEP1, hypothet 98.0 2.7E-05 9.2E-10 77.8 11.8 23 278-300 2-24 (178)
200 2vhj_A Ntpase P4, P4; non- hyd 98.0 7.1E-06 2.4E-10 88.6 6.4 104 278-394 125-236 (331)
201 1u0j_A DNA replication protein 97.9 3.5E-05 1.2E-09 81.3 10.3 124 267-428 93-248 (267)
202 2r2a_A Uncharacterized protein 97.9 3.8E-05 1.3E-09 78.1 9.3 82 681-763 7-99 (199)
203 1z6t_A APAF-1, apoptotic prote 97.9 0.00016 5.6E-09 86.6 16.6 49 251-299 120-170 (591)
204 2orw_A Thymidine kinase; TMTK, 97.8 1.9E-05 6.4E-10 79.5 6.1 95 681-777 5-102 (184)
205 3upu_A ATP-dependent DNA helic 97.8 4.5E-05 1.5E-09 88.4 9.8 62 241-303 10-72 (459)
206 2r8r_A Sensor protein; KDPD, P 97.7 0.00011 3.8E-09 75.3 10.2 153 679-860 6-172 (228)
207 1ye8_A Protein THEP1, hypothet 97.6 0.00018 6.1E-09 71.8 9.6 23 681-703 2-24 (178)
208 2b8t_A Thymidine kinase; deoxy 97.6 0.00018 6.1E-09 74.3 9.6 98 680-777 13-115 (223)
209 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.00019 6.6E-09 77.5 8.3 72 681-765 125-196 (331)
210 2orw_A Thymidine kinase; TMTK, 97.5 3.7E-05 1.3E-09 77.3 2.5 117 279-413 6-133 (184)
211 3upu_A ATP-dependent DNA helic 97.3 0.00046 1.6E-08 79.8 9.3 113 653-777 29-154 (459)
212 3e1s_A Exodeoxyribonuclease V, 97.2 0.0086 2.9E-07 70.9 19.5 128 162-302 72-230 (574)
213 3cmw_A Protein RECA, recombina 97.2 0.00043 1.5E-08 90.2 8.7 84 681-766 1433-1524(1706)
214 3sfz_A APAF-1, apoptotic pepti 97.2 0.0011 3.7E-08 86.6 12.6 156 250-431 119-299 (1249)
215 1vt4_I APAF-1 related killer D 97.1 0.0026 9E-08 78.5 13.2 43 257-299 130-173 (1221)
216 2a5y_B CED-4; apoptosis; HET: 97.1 0.0023 7.9E-08 75.8 12.4 147 258-430 131-305 (549)
217 2r8r_A Sensor protein; KDPD, P 97.0 0.004 1.4E-07 63.8 12.1 39 274-319 4-42 (228)
218 1xx6_A Thymidine kinase; NESG, 97.0 0.00065 2.2E-08 68.4 5.8 95 681-777 10-107 (191)
219 3jvv_A Twitching mobility prot 96.9 0.0011 3.8E-08 73.5 7.3 96 680-779 124-222 (356)
220 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0017 5.9E-08 67.1 8.3 25 277-301 24-48 (235)
221 2cvh_A DNA repair and recombin 96.9 0.0013 4.3E-08 67.6 7.0 21 278-298 22-42 (220)
222 1g5t_A COB(I)alamin adenosyltr 96.8 0.0027 9.4E-08 63.5 8.2 112 680-806 29-167 (196)
223 2b8t_A Thymidine kinase; deoxy 96.8 0.0019 6.4E-08 66.6 7.0 102 279-396 15-128 (223)
224 3cmu_A Protein RECA, recombina 96.7 0.003 1E-07 83.4 10.4 84 681-766 1777-1868(2050)
225 2j9r_A Thymidine kinase; TK1, 96.7 0.0018 6.3E-08 65.8 6.5 95 681-777 30-127 (214)
226 3trf_A Shikimate kinase, SK; a 96.7 0.00067 2.3E-08 67.8 3.0 33 276-318 5-37 (185)
227 3e1s_A Exodeoxyribonuclease V, 96.7 0.0018 6.1E-08 76.8 6.9 90 681-777 206-305 (574)
228 2a5y_B CED-4; apoptosis; HET: 96.6 0.017 5.9E-07 68.2 15.3 44 652-701 131-174 (549)
229 1qhx_A CPT, protein (chloramph 96.6 0.0011 3.8E-08 65.7 4.0 34 277-320 4-37 (178)
230 1w4r_A Thymidine kinase; type 96.5 0.0023 7.9E-08 64.0 5.7 92 681-778 22-117 (195)
231 3dm5_A SRP54, signal recogniti 96.5 0.025 8.6E-07 64.1 14.8 85 680-764 101-195 (443)
232 2i3b_A HCR-ntpase, human cance 96.5 0.002 7E-08 64.7 5.2 24 681-704 3-26 (189)
233 3crm_A TRNA delta(2)-isopenten 96.5 0.0011 3.8E-08 72.0 3.2 100 277-394 6-105 (323)
234 1xp8_A RECA protein, recombina 96.5 0.0085 2.9E-07 66.6 10.4 78 277-362 75-166 (366)
235 1z6t_A APAF-1, apoptotic prote 96.5 0.0099 3.4E-07 70.9 11.8 46 649-701 124-169 (591)
236 3kl4_A SRP54, signal recogniti 96.5 0.031 1.1E-06 63.3 15.0 84 680-764 98-192 (433)
237 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0044 1.5E-07 63.9 7.5 36 681-716 25-60 (235)
238 1n0w_A DNA repair protein RAD5 96.4 0.0095 3.3E-07 61.9 10.1 23 278-300 26-48 (243)
239 2iut_A DNA translocase FTSK; n 96.4 0.019 6.5E-07 66.9 13.3 141 276-427 214-419 (574)
240 3vaa_A Shikimate kinase, SK; s 96.4 0.0014 4.7E-08 66.5 3.2 33 275-317 24-56 (199)
241 3iij_A Coilin-interacting nucl 96.4 0.0018 6.3E-08 64.3 4.0 26 275-300 10-35 (180)
242 1gvn_B Zeta; postsegregational 96.4 0.0045 1.5E-07 66.7 7.2 39 676-718 31-69 (287)
243 3dm5_A SRP54, signal recogniti 96.4 0.051 1.8E-06 61.5 16.0 76 277-360 101-194 (443)
244 2zr9_A Protein RECA, recombina 96.3 0.0074 2.5E-07 66.8 8.8 83 681-764 63-152 (349)
245 3hr8_A Protein RECA; alpha and 96.3 0.01 3.5E-07 65.6 9.9 84 681-765 63-153 (356)
246 1qhx_A CPT, protein (chloramph 96.3 0.0021 7.2E-08 63.6 3.9 35 681-718 5-39 (178)
247 1via_A Shikimate kinase; struc 96.3 0.002 6.7E-08 63.8 3.6 24 277-300 5-28 (175)
248 3kb2_A SPBC2 prophage-derived 96.3 0.0023 7.7E-08 62.8 3.8 23 278-300 3-25 (173)
249 2fz4_A DNA repair protein RAD2 96.3 0.0089 3E-07 62.4 8.5 104 681-801 110-228 (237)
250 4a74_A DNA repair and recombin 96.2 0.0094 3.2E-07 61.4 8.6 23 278-300 27-49 (231)
251 1ex7_A Guanylate kinase; subst 96.2 0.012 4E-07 58.8 8.8 24 277-300 2-25 (186)
252 2iyv_A Shikimate kinase, SK; t 96.2 0.0022 7.4E-08 64.0 3.5 32 277-318 3-34 (184)
253 1zuh_A Shikimate kinase; alpha 96.2 0.0019 6.4E-08 63.4 2.9 33 276-318 7-39 (168)
254 2eyu_A Twitching motility prot 96.2 0.006 2E-07 64.6 7.0 25 680-704 26-50 (261)
255 1u94_A RECA protein, recombina 96.2 0.0074 2.5E-07 66.9 7.9 79 277-362 64-155 (356)
256 1y63_A LMAJ004144AAA protein; 96.2 0.0019 6.6E-08 64.5 2.9 26 275-300 9-35 (184)
257 1w36_D RECD, exodeoxyribonucle 96.2 0.0069 2.4E-07 72.4 8.0 27 751-777 262-288 (608)
258 3trf_A Shikimate kinase, SK; a 96.2 0.0029 1E-07 63.0 4.0 29 681-712 7-35 (185)
259 2p5t_B PEZT; postsegregational 96.1 0.0075 2.6E-07 63.6 7.3 35 681-718 34-68 (253)
260 1zu4_A FTSY; GTPase, signal re 96.1 0.04 1.4E-06 60.1 13.2 41 678-718 104-144 (320)
261 2cdn_A Adenylate kinase; phosp 96.1 0.0039 1.3E-07 63.1 4.7 28 675-703 17-44 (201)
262 2dr3_A UPF0273 protein PH0284; 96.1 0.012 4.1E-07 61.3 8.5 25 277-301 24-48 (247)
263 2i3b_A HCR-ntpase, human cance 96.1 0.0046 1.6E-07 62.1 4.9 24 278-301 3-26 (189)
264 2cvh_A DNA repair and recombin 96.0 0.0064 2.2E-07 62.2 6.0 34 681-717 22-55 (220)
265 3hr8_A Protein RECA; alpha and 96.0 0.017 5.7E-07 63.8 9.6 77 278-362 63-153 (356)
266 2ze6_A Isopentenyl transferase 96.0 0.0034 1.2E-07 66.3 3.9 32 278-319 3-34 (253)
267 2fz4_A DNA repair protein RAD2 96.0 0.015 5.2E-07 60.5 8.8 24 277-300 109-132 (237)
268 2dr3_A UPF0273 protein PH0284; 96.0 0.011 3.7E-07 61.6 7.7 37 681-717 25-61 (247)
269 1cr0_A DNA primase/helicase; R 96.0 0.024 8.1E-07 61.2 10.6 26 277-302 36-61 (296)
270 3vaa_A Shikimate kinase, SK; s 96.0 0.0041 1.4E-07 62.9 4.2 28 681-711 27-54 (199)
271 1kag_A SKI, shikimate kinase I 96.0 0.0053 1.8E-07 60.3 4.9 24 277-300 5-28 (173)
272 1xp8_A RECA protein, recombina 96.0 0.013 4.3E-07 65.3 8.4 83 681-764 76-165 (366)
273 1e6c_A Shikimate kinase; phosp 96.0 0.0039 1.3E-07 61.3 3.8 24 277-300 3-26 (173)
274 3a8t_A Adenylate isopentenyltr 96.0 0.006 2E-07 66.5 5.5 33 277-319 41-73 (339)
275 2rhm_A Putative kinase; P-loop 95.9 0.0026 8.8E-08 63.8 2.4 24 277-300 6-29 (193)
276 3kb2_A SPBC2 prophage-derived 95.9 0.0055 1.9E-07 60.0 4.6 23 681-703 3-25 (173)
277 3t61_A Gluconokinase; PSI-biol 95.9 0.0044 1.5E-07 62.8 4.0 25 276-300 18-42 (202)
278 1aky_A Adenylate kinase; ATP:A 95.9 0.0037 1.3E-07 64.4 3.4 25 276-300 4-28 (220)
279 2cdn_A Adenylate kinase; phosp 95.9 0.0037 1.3E-07 63.3 3.4 24 277-300 21-44 (201)
280 2c95_A Adenylate kinase 1; tra 95.8 0.0037 1.3E-07 62.8 3.1 25 276-300 9-33 (196)
281 1nks_A Adenylate kinase; therm 95.8 0.005 1.7E-07 61.5 4.1 38 681-718 3-40 (194)
282 1zuh_A Shikimate kinase; alpha 95.8 0.0053 1.8E-07 60.1 4.0 28 681-711 9-36 (168)
283 3lw7_A Adenylate kinase relate 95.8 0.0036 1.2E-07 61.4 2.7 22 278-300 3-24 (179)
284 1via_A Shikimate kinase; struc 95.8 0.0046 1.6E-07 61.0 3.4 23 681-703 6-28 (175)
285 2zr9_A Protein RECA, recombina 95.8 0.014 4.8E-07 64.5 7.6 78 277-362 62-153 (349)
286 1nlf_A Regulatory protein REPA 95.8 0.045 1.6E-06 58.4 11.4 27 277-303 31-57 (279)
287 3foz_A TRNA delta(2)-isopenten 95.7 0.013 4.3E-07 63.0 6.7 99 278-394 12-110 (316)
288 1gvn_B Zeta; postsegregational 95.7 0.008 2.7E-07 64.7 5.3 24 277-300 34-57 (287)
289 1qzm_A ATP-dependent protease 95.7 0.043 1.5E-06 47.6 8.8 68 850-921 1-71 (94)
290 2ewv_A Twitching motility prot 95.7 0.013 4.3E-07 65.6 7.1 89 680-778 137-234 (372)
291 1tev_A UMP-CMP kinase; ploop, 95.7 0.0041 1.4E-07 62.3 2.7 24 277-300 4-27 (196)
292 3exa_A TRNA delta(2)-isopenten 95.7 0.011 3.7E-07 63.7 6.1 99 278-394 5-103 (322)
293 1n0w_A DNA repair protein RAD5 95.7 0.012 4.3E-07 61.0 6.6 37 681-717 26-68 (243)
294 1y63_A LMAJ004144AAA protein; 95.7 0.0069 2.4E-07 60.4 4.4 36 681-720 12-47 (184)
295 4a74_A DNA repair and recombin 95.7 0.011 3.9E-07 60.8 6.1 37 681-717 27-69 (231)
296 2yhs_A FTSY, cell division pro 95.7 0.044 1.5E-06 62.7 11.3 37 680-716 294-330 (503)
297 2rhm_A Putative kinase; P-loop 95.7 0.007 2.4E-07 60.5 4.2 23 681-703 7-29 (193)
298 2orv_A Thymidine kinase; TP4A 95.7 0.046 1.6E-06 56.0 10.3 91 681-777 21-114 (234)
299 2ze6_A Isopentenyl transferase 95.6 0.0074 2.5E-07 63.6 4.6 32 681-715 3-34 (253)
300 3lda_A DNA repair protein RAD5 95.6 0.03 1E-06 62.9 9.8 40 278-320 180-221 (400)
301 1kht_A Adenylate kinase; phosp 95.6 0.0042 1.4E-07 62.0 2.5 25 277-301 4-28 (192)
302 1ak2_A Adenylate kinase isoenz 95.6 0.0056 1.9E-07 63.7 3.5 25 276-300 16-40 (233)
303 2ius_A DNA translocase FTSK; n 95.6 0.051 1.7E-06 62.8 11.8 71 350-427 299-373 (512)
304 2iyv_A Shikimate kinase, SK; t 95.6 0.0063 2.2E-07 60.5 3.8 23 681-703 4-26 (184)
305 1g5t_A COB(I)alamin adenosyltr 95.6 0.067 2.3E-06 53.5 11.1 121 275-413 27-174 (196)
306 3jvv_A Twitching mobility prot 95.6 0.019 6.5E-07 63.6 7.9 29 274-302 121-149 (356)
307 1qf9_A UMP/CMP kinase, protein 95.6 0.0044 1.5E-07 61.9 2.5 24 277-300 7-30 (194)
308 1kht_A Adenylate kinase; phosp 95.6 0.0069 2.4E-07 60.4 4.0 37 681-717 5-41 (192)
309 1pzn_A RAD51, DNA repair and r 95.6 0.031 1.1E-06 61.8 9.6 23 278-300 133-155 (349)
310 2pt5_A Shikimate kinase, SK; a 95.6 0.0056 1.9E-07 59.8 3.1 23 278-300 2-24 (168)
311 2z43_A DNA repair and recombin 95.6 0.013 4.5E-07 64.1 6.5 44 277-321 108-151 (324)
312 3iij_A Coilin-interacting nucl 95.6 0.006 2.1E-07 60.5 3.4 23 681-703 13-35 (180)
313 3dl0_A Adenylate kinase; phosp 95.6 0.0042 1.4E-07 63.7 2.3 23 278-300 2-24 (216)
314 1zak_A Adenylate kinase; ATP:A 95.6 0.0044 1.5E-07 63.9 2.4 26 275-300 4-29 (222)
315 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.014 4.8E-07 64.0 6.6 88 681-778 173-264 (330)
316 1xx6_A Thymidine kinase; NESG, 95.6 0.009 3.1E-07 60.0 4.6 99 279-396 11-120 (191)
317 2bwj_A Adenylate kinase 5; pho 95.5 0.0052 1.8E-07 61.8 2.8 24 277-300 13-36 (199)
318 1nks_A Adenylate kinase; therm 95.5 0.0076 2.6E-07 60.1 4.0 24 278-301 3-26 (194)
319 2p5t_B PEZT; postsegregational 95.5 0.012 4.2E-07 61.9 5.8 24 277-300 33-56 (253)
320 3fb4_A Adenylate kinase; psych 95.5 0.0057 2E-07 62.6 3.1 23 278-300 2-24 (216)
321 1kag_A SKI, shikimate kinase I 95.5 0.0069 2.4E-07 59.5 3.5 23 681-703 6-28 (173)
322 1knq_A Gluconate kinase; ALFA/ 95.5 0.012 4E-07 58.0 5.2 33 681-718 10-42 (175)
323 3tlx_A Adenylate kinase 2; str 95.5 0.0085 2.9E-07 62.8 4.4 26 275-300 28-53 (243)
324 3cm0_A Adenylate kinase; ATP-b 95.5 0.0086 2.9E-07 59.6 4.2 23 278-300 6-28 (186)
325 1nlf_A Regulatory protein REPA 95.5 0.024 8.2E-07 60.6 8.0 24 681-704 32-55 (279)
326 3be4_A Adenylate kinase; malar 95.5 0.0053 1.8E-07 63.1 2.6 24 277-300 6-29 (217)
327 1zd8_A GTP:AMP phosphotransfer 95.5 0.005 1.7E-07 63.7 2.5 25 276-300 7-31 (227)
328 1zp6_A Hypothetical protein AT 95.5 0.0077 2.6E-07 60.2 3.8 35 681-718 11-45 (191)
329 2ehv_A Hypothetical protein PH 95.4 0.035 1.2E-06 57.8 9.0 22 277-298 31-52 (251)
330 3e2i_A Thymidine kinase; Zn-bi 95.4 0.014 4.8E-07 59.1 5.5 96 681-778 30-128 (219)
331 3sr0_A Adenylate kinase; phosp 95.4 0.01 3.5E-07 60.4 4.4 23 278-300 2-24 (206)
332 2r6a_A DNAB helicase, replicat 95.4 0.015 5.3E-07 66.8 6.5 26 277-302 204-229 (454)
333 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.028 9.6E-07 59.4 8.0 37 277-320 5-41 (260)
334 3umf_A Adenylate kinase; rossm 95.4 0.0096 3.3E-07 61.0 4.1 37 677-719 28-64 (217)
335 1v5w_A DMC1, meiotic recombina 95.4 0.041 1.4E-06 60.7 9.6 43 278-321 124-166 (343)
336 1tev_A UMP-CMP kinase; ploop, 95.4 0.0091 3.1E-07 59.7 3.9 33 681-718 5-37 (196)
337 2c95_A Adenylate kinase 1; tra 95.4 0.0098 3.3E-07 59.6 4.2 23 681-703 11-33 (196)
338 1e6c_A Shikimate kinase; phosp 95.4 0.0085 2.9E-07 58.7 3.6 23 681-703 4-26 (173)
339 1ly1_A Polynucleotide kinase; 95.4 0.0043 1.5E-07 61.3 1.4 21 278-298 4-24 (181)
340 3lw7_A Adenylate kinase relate 95.3 0.0087 3E-07 58.5 3.6 22 681-703 3-24 (179)
341 1ukz_A Uridylate kinase; trans 95.3 0.0061 2.1E-07 61.7 2.5 24 277-300 16-39 (203)
342 3t61_A Gluconokinase; PSI-biol 95.3 0.011 3.6E-07 59.9 4.3 33 681-718 20-52 (202)
343 1aky_A Adenylate kinase; ATP:A 95.3 0.0097 3.3E-07 61.1 4.0 23 681-703 6-28 (220)
344 4eun_A Thermoresistant glucoki 95.3 0.012 4.1E-07 59.5 4.6 26 275-300 28-53 (200)
345 1knq_A Gluconate kinase; ALFA/ 95.3 0.0079 2.7E-07 59.2 3.2 24 277-300 9-32 (175)
346 2vli_A Antibiotic resistance p 95.3 0.0078 2.7E-07 59.7 3.1 28 681-711 7-34 (183)
347 1ukz_A Uridylate kinase; trans 95.3 0.011 3.6E-07 59.9 4.2 33 681-718 17-49 (203)
348 3sr0_A Adenylate kinase; phosp 95.3 0.0096 3.3E-07 60.6 3.7 34 681-719 2-35 (206)
349 2pt5_A Shikimate kinase, SK; a 95.3 0.011 3.7E-07 57.7 4.0 23 681-703 2-24 (168)
350 2vli_A Antibiotic resistance p 95.3 0.0065 2.2E-07 60.2 2.4 24 277-300 6-29 (183)
351 3kl4_A SRP54, signal recogniti 95.3 0.1 3.5E-06 59.1 12.4 36 277-319 98-133 (433)
352 1ak2_A Adenylate kinase isoenz 95.2 0.012 3.9E-07 61.2 4.3 23 681-703 18-40 (233)
353 2px0_A Flagellar biosynthesis 95.2 0.058 2E-06 58.1 9.8 95 680-776 106-209 (296)
354 3cm0_A Adenylate kinase; ATP-b 95.2 0.0098 3.3E-07 59.1 3.4 33 681-718 6-38 (186)
355 1e4v_A Adenylate kinase; trans 95.2 0.007 2.4E-07 62.0 2.4 23 278-300 2-24 (214)
356 1vma_A Cell division protein F 95.1 0.2 7E-06 54.0 14.0 39 680-718 105-143 (306)
357 3dl0_A Adenylate kinase; phosp 95.1 0.011 3.9E-07 60.4 3.9 23 681-703 2-24 (216)
358 1zp6_A Hypothetical protein AT 95.1 0.0073 2.5E-07 60.4 2.3 24 277-300 10-33 (191)
359 3fb4_A Adenylate kinase; psych 95.1 0.012 4.2E-07 60.1 4.0 23 681-703 2-24 (216)
360 1u94_A RECA protein, recombina 95.1 0.031 1.1E-06 61.9 7.5 83 681-764 65-154 (356)
361 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.8E-07 61.0 3.7 23 681-703 9-31 (227)
362 2yvu_A Probable adenylyl-sulfa 95.1 0.015 5E-07 58.0 4.4 25 277-301 14-38 (186)
363 3uie_A Adenylyl-sulfate kinase 95.1 0.015 5.2E-07 58.7 4.6 38 681-718 27-64 (200)
364 2q6t_A DNAB replication FORK h 95.1 0.033 1.1E-06 63.8 8.0 25 278-302 202-226 (444)
365 3umf_A Adenylate kinase; rossm 95.1 0.011 3.8E-07 60.5 3.6 23 278-300 31-53 (217)
366 2iut_A DNA translocase FTSK; n 95.1 0.14 4.9E-06 59.6 13.2 37 681-717 216-256 (574)
367 2ga8_A Hypothetical 39.9 kDa p 95.1 0.014 4.7E-07 64.0 4.4 41 260-300 4-48 (359)
368 1rz3_A Hypothetical protein rb 95.1 0.034 1.2E-06 56.2 7.1 38 681-718 24-61 (201)
369 3io5_A Recombination and repai 95.1 0.024 8.1E-07 61.0 6.0 83 681-764 30-124 (333)
370 2yvu_A Probable adenylyl-sulfa 95.0 0.018 6.1E-07 57.3 4.8 36 681-716 15-50 (186)
371 2xxa_A Signal recognition part 95.0 0.039 1.3E-06 62.8 8.1 42 678-719 99-141 (433)
372 3lxw_A GTPase IMAP family memb 95.0 0.057 1.9E-06 56.5 8.9 24 276-299 21-44 (247)
373 3tlx_A Adenylate kinase 2; str 95.0 0.014 4.9E-07 61.0 4.2 33 681-718 31-63 (243)
374 2jaq_A Deoxyguanosine kinase; 95.0 0.015 5.2E-07 58.5 4.3 23 278-300 2-24 (205)
375 2bwj_A Adenylate kinase 5; pho 95.0 0.013 4.5E-07 58.8 3.7 33 681-718 14-46 (199)
376 1ly1_A Polynucleotide kinase; 94.9 0.0093 3.2E-07 58.8 2.5 32 681-716 4-35 (181)
377 3bh0_A DNAB-like replicative h 94.9 0.084 2.9E-06 57.4 10.3 25 278-302 70-94 (315)
378 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.7E-07 60.9 2.9 33 681-718 7-39 (222)
379 3nwj_A ATSK2; P loop, shikimat 94.9 0.014 4.7E-07 61.3 3.8 25 276-300 48-72 (250)
380 3eph_A TRNA isopentenyltransfe 94.9 0.025 8.5E-07 63.0 6.0 31 278-318 4-34 (409)
381 2xb4_A Adenylate kinase; ATP-b 94.9 0.017 6E-07 59.4 4.5 23 278-300 2-24 (223)
382 2qor_A Guanylate kinase; phosp 94.9 0.014 4.8E-07 59.2 3.7 25 276-300 12-36 (204)
383 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.6E-07 61.9 3.7 37 681-717 6-42 (260)
384 3uie_A Adenylyl-sulfate kinase 94.9 0.012 4E-07 59.6 3.0 28 274-301 23-50 (200)
385 1qf9_A UMP/CMP kinase, protein 94.9 0.015 5E-07 58.0 3.7 23 681-703 8-30 (194)
386 3crm_A TRNA delta(2)-isopenten 94.8 0.017 5.7E-07 62.8 4.3 33 681-716 7-39 (323)
387 1w36_D RECD, exodeoxyribonucle 94.8 0.083 2.9E-06 63.0 10.8 27 276-302 164-190 (608)
388 3be4_A Adenylate kinase; malar 94.8 0.015 5E-07 59.7 3.7 23 681-703 7-29 (217)
389 1w4r_A Thymidine kinase; type 94.8 0.025 8.4E-07 56.5 5.1 24 279-302 23-47 (195)
390 2pbr_A DTMP kinase, thymidylat 94.8 0.021 7.2E-07 57.0 4.8 33 279-318 3-35 (195)
391 3ice_A Transcription terminati 94.8 0.13 4.5E-06 56.7 11.1 29 274-302 172-200 (422)
392 3b9q_A Chloroplast SRP recepto 94.7 0.14 4.7E-06 55.3 11.3 31 680-710 101-131 (302)
393 4eun_A Thermoresistant glucoki 94.7 0.023 7.9E-07 57.3 4.8 33 681-718 31-63 (200)
394 1e4v_A Adenylate kinase; trans 94.7 0.017 6E-07 58.9 3.9 23 681-703 2-24 (214)
395 2pez_A Bifunctional 3'-phospho 94.7 0.023 7.7E-07 56.2 4.5 36 681-716 7-42 (179)
396 1cke_A CK, MSSA, protein (cyti 94.6 0.023 7.7E-07 58.5 4.5 24 277-300 6-29 (227)
397 2if2_A Dephospho-COA kinase; a 94.6 0.013 4.5E-07 59.2 2.5 22 278-300 3-24 (204)
398 2pez_A Bifunctional 3'-phospho 94.6 0.028 9.4E-07 55.6 4.8 35 277-318 6-40 (179)
399 3r20_A Cytidylate kinase; stru 94.5 0.025 8.4E-07 58.6 4.4 25 276-300 9-33 (233)
400 2plr_A DTMP kinase, probable t 94.5 0.018 6.1E-07 58.4 3.4 23 278-300 6-28 (213)
401 3nwj_A ATSK2; P loop, shikimat 94.5 0.032 1.1E-06 58.5 5.3 23 681-703 50-72 (250)
402 3foz_A TRNA delta(2)-isopenten 94.5 0.027 9.3E-07 60.4 4.8 35 681-718 12-46 (316)
403 2pbr_A DTMP kinase, thymidylat 94.5 0.024 8.3E-07 56.5 4.2 34 681-714 2-35 (195)
404 3lda_A DNA repair protein RAD5 94.5 0.046 1.6E-06 61.4 6.8 37 681-717 180-222 (400)
405 3a8t_A Adenylate isopentenyltr 94.5 0.02 6.9E-07 62.3 3.7 34 681-717 42-75 (339)
406 2z0h_A DTMP kinase, thymidylat 94.4 0.03 1E-06 56.0 4.8 24 279-302 3-26 (197)
407 3vkw_A Replicase large subunit 94.4 0.098 3.3E-06 59.1 9.4 90 681-777 163-260 (446)
408 2j9r_A Thymidine kinase; TK1, 94.4 0.018 6E-07 58.5 3.0 96 280-396 32-140 (214)
409 2plr_A DTMP kinase, probable t 94.4 0.029 9.8E-07 56.9 4.7 24 681-704 6-29 (213)
410 3d3q_A TRNA delta(2)-isopenten 94.4 0.019 6.4E-07 62.8 3.4 31 278-318 9-39 (340)
411 2grj_A Dephospho-COA kinase; T 94.4 0.02 6.7E-07 57.6 3.3 31 278-318 14-44 (192)
412 2xb4_A Adenylate kinase; ATP-b 94.3 0.024 8.1E-07 58.4 3.8 23 681-703 2-24 (223)
413 1kgd_A CASK, peripheral plasma 94.3 0.019 6.4E-07 57.0 2.9 23 278-300 7-29 (180)
414 1uj2_A Uridine-cytidine kinase 94.3 0.036 1.2E-06 58.2 5.1 39 681-719 24-67 (252)
415 2jaq_A Deoxyguanosine kinase; 94.3 0.028 9.6E-07 56.5 4.1 23 681-703 2-24 (205)
416 2qt1_A Nicotinamide riboside k 94.2 0.036 1.2E-06 56.2 4.9 35 680-718 22-56 (207)
417 2bbw_A Adenylate kinase 4, AK4 94.2 0.022 7.6E-07 59.6 3.4 25 276-300 27-51 (246)
418 3e70_C DPA, signal recognition 94.2 0.098 3.4E-06 57.1 8.7 33 680-712 130-162 (328)
419 1rz3_A Hypothetical protein rb 94.2 0.05 1.7E-06 54.9 5.9 42 260-301 3-47 (201)
420 2ga8_A Hypothetical 39.9 kDa p 94.2 0.039 1.3E-06 60.5 5.4 23 681-703 26-48 (359)
421 2if2_A Dephospho-COA kinase; a 94.2 0.024 8.1E-07 57.3 3.5 22 681-703 3-24 (204)
422 3r20_A Cytidylate kinase; stru 94.2 0.028 9.6E-07 58.2 4.0 33 681-718 11-43 (233)
423 2ewv_A Twitching motility prot 94.2 0.024 8.3E-07 63.2 3.8 28 274-301 134-161 (372)
424 3p32_A Probable GTPase RV1496/ 94.2 0.13 4.5E-06 56.9 9.8 39 264-302 65-105 (355)
425 3h1t_A Type I site-specific re 94.2 0.076 2.6E-06 63.2 8.4 41 654-704 183-223 (590)
426 1nn5_A Similar to deoxythymidy 94.2 0.022 7.5E-07 57.9 3.2 25 276-300 9-33 (215)
427 1sky_E F1-ATPase, F1-ATP synth 94.2 0.056 1.9E-06 61.5 6.7 25 277-301 152-176 (473)
428 4a1f_A DNAB helicase, replicat 94.2 0.086 3E-06 57.7 8.0 25 278-302 48-72 (338)
429 2z43_A DNA repair and recombin 94.2 0.052 1.8E-06 59.4 6.3 37 681-717 109-151 (324)
430 2wwf_A Thymidilate kinase, put 94.1 0.02 7E-07 58.1 2.8 24 277-300 11-34 (212)
431 1odf_A YGR205W, hypothetical 3 94.1 0.064 2.2E-06 57.6 6.8 45 657-704 12-56 (290)
432 3io5_A Recombination and repai 94.1 0.084 2.9E-06 56.7 7.6 80 278-362 30-125 (333)
433 2zts_A Putative uncharacterize 94.1 0.08 2.8E-06 55.0 7.5 23 277-299 31-53 (251)
434 1j8m_F SRP54, signal recogniti 94.1 0.13 4.4E-06 55.4 9.1 38 681-718 100-137 (297)
435 2og2_A Putative signal recogni 94.1 0.23 7.8E-06 54.8 11.3 32 680-711 158-189 (359)
436 1cke_A CK, MSSA, protein (cyti 94.0 0.029 1E-06 57.6 3.8 34 681-719 7-40 (227)
437 2j37_W Signal recognition part 94.0 0.41 1.4E-05 55.2 13.8 151 193-355 6-190 (504)
438 3c8u_A Fructokinase; YP_612366 94.0 0.033 1.1E-06 56.6 4.1 39 263-301 7-47 (208)
439 3sfz_A APAF-1, apoptotic pepti 94.0 0.17 5.8E-06 65.8 11.8 47 649-702 124-170 (1249)
440 3ake_A Cytidylate kinase; CMP 94.0 0.024 8.3E-07 57.2 3.1 23 278-300 4-26 (208)
441 2v54_A DTMP kinase, thymidylat 94.0 0.022 7.5E-07 57.4 2.7 24 277-300 5-28 (204)
442 1c9k_A COBU, adenosylcobinamid 93.9 0.024 8.3E-07 56.0 2.8 33 682-718 2-34 (180)
443 1jjv_A Dephospho-COA kinase; P 93.9 0.02 6.7E-07 58.1 2.2 21 278-298 4-24 (206)
444 2z0h_A DTMP kinase, thymidylat 93.9 0.033 1.1E-06 55.7 3.9 30 682-711 3-32 (197)
445 3tqc_A Pantothenate kinase; bi 93.9 0.12 4.1E-06 56.1 8.5 48 652-704 70-117 (321)
446 2qor_A Guanylate kinase; phosp 93.9 0.027 9.2E-07 57.0 3.2 23 681-703 14-36 (204)
447 1nn5_A Similar to deoxythymidy 93.9 0.034 1.2E-06 56.5 4.0 23 681-703 11-33 (215)
448 1kgd_A CASK, peripheral plasma 93.9 0.035 1.2E-06 55.0 3.9 23 681-703 7-29 (180)
449 3llm_A ATP-dependent RNA helic 93.9 0.15 5.2E-06 52.7 8.9 20 681-700 78-97 (235)
450 3tau_A Guanylate kinase, GMP k 93.9 0.029 9.9E-07 57.1 3.3 24 277-300 9-32 (208)
451 3c8u_A Fructokinase; YP_612366 93.8 0.064 2.2E-06 54.4 5.9 24 681-704 24-47 (208)
452 1lvg_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 56.2 3.7 24 277-300 5-28 (198)
453 3exa_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 59.7 4.0 34 681-717 5-38 (322)
454 2dyk_A GTP-binding protein; GT 93.8 0.1 3.6E-06 49.7 7.1 22 278-299 3-24 (161)
455 1m7g_A Adenylylsulfate kinase; 93.8 0.039 1.3E-06 56.1 4.2 37 681-717 27-64 (211)
456 2bdt_A BH3686; alpha-beta prot 93.8 0.028 9.6E-07 56.0 3.0 22 278-299 4-25 (189)
457 2wwf_A Thymidilate kinase, put 93.8 0.036 1.2E-06 56.2 3.9 23 681-703 12-34 (212)
458 1svm_A Large T antigen; AAA+ f 93.7 0.076 2.6E-06 59.1 6.7 23 681-703 171-193 (377)
459 2h92_A Cytidylate kinase; ross 93.7 0.033 1.1E-06 56.9 3.5 25 276-300 3-27 (219)
460 2grj_A Dephospho-COA kinase; T 93.7 0.039 1.3E-06 55.4 3.8 34 681-719 14-47 (192)
461 1vma_A Cell division protein F 93.7 0.13 4.5E-06 55.5 8.3 26 277-302 105-130 (306)
462 1uj2_A Uridine-cytidine kinase 93.7 0.042 1.4E-06 57.7 4.2 45 277-323 23-67 (252)
463 1uf9_A TT1252 protein; P-loop, 93.6 0.04 1.4E-06 55.4 3.9 25 677-702 7-31 (203)
464 3ney_A 55 kDa erythrocyte memb 93.6 0.036 1.2E-06 55.8 3.5 25 276-300 19-43 (197)
465 3d3q_A TRNA delta(2)-isopenten 93.6 0.041 1.4E-06 60.0 4.2 23 681-703 9-31 (340)
466 2bbw_A Adenylate kinase 4, AK4 93.6 0.039 1.3E-06 57.6 3.9 23 681-703 29-51 (246)
467 1jjv_A Dephospho-COA kinase; P 93.6 0.034 1.1E-06 56.3 3.3 21 681-701 4-24 (206)
468 2gxq_A Heat resistant RNA depe 93.6 0.24 8.2E-06 49.7 9.7 24 277-300 39-63 (207)
469 3ake_A Cytidylate kinase; CMP 93.6 0.043 1.5E-06 55.4 4.0 33 681-718 4-36 (208)
470 1v5w_A DMC1, meiotic recombina 93.6 0.088 3E-06 58.0 6.8 37 681-717 124-166 (343)
471 3tr0_A Guanylate kinase, GMP k 93.5 0.032 1.1E-06 56.2 3.0 23 278-300 9-31 (205)
472 3tau_A Guanylate kinase, GMP k 93.5 0.038 1.3E-06 56.2 3.4 23 681-703 10-32 (208)
473 2bdt_A BH3686; alpha-beta prot 93.5 0.038 1.3E-06 55.0 3.4 23 681-703 4-26 (189)
474 2v54_A DTMP kinase, thymidylat 93.5 0.04 1.4E-06 55.5 3.6 32 681-714 6-37 (204)
475 3a00_A Guanylate kinase, GMP k 93.5 0.038 1.3E-06 55.0 3.3 23 278-300 3-25 (186)
476 1m7g_A Adenylylsulfate kinase; 93.5 0.036 1.2E-06 56.4 3.2 27 275-301 24-50 (211)
477 2i1q_A DNA repair and recombin 93.4 0.061 2.1E-06 58.7 5.2 23 278-300 100-122 (322)
478 2j41_A Guanylate kinase; GMP, 93.4 0.037 1.3E-06 55.8 3.2 24 277-300 7-30 (207)
479 3bgw_A DNAB-like replicative h 93.4 0.17 6E-06 57.7 9.2 25 278-302 199-223 (444)
480 4e22_A Cytidylate kinase; P-lo 93.4 0.051 1.8E-06 57.1 4.4 24 277-300 28-51 (252)
481 3lxx_A GTPase IMAP family memb 93.4 0.062 2.1E-06 55.8 5.0 25 275-299 28-52 (239)
482 3eph_A TRNA isopentenyltransfe 93.4 0.054 1.8E-06 60.4 4.6 35 681-718 4-38 (409)
483 2pt7_A CAG-ALFA; ATPase, prote 93.4 0.098 3.4E-06 57.3 6.7 25 276-300 171-195 (330)
484 2f6r_A COA synthase, bifunctio 93.3 0.048 1.6E-06 58.3 4.0 36 676-718 73-108 (281)
485 1sq5_A Pantothenate kinase; P- 93.3 0.12 4.2E-06 55.9 7.3 38 681-718 82-121 (308)
486 2qmh_A HPR kinase/phosphorylas 93.3 0.027 9.3E-07 56.3 1.8 24 277-300 35-58 (205)
487 2j41_A Guanylate kinase; GMP, 93.3 0.043 1.5E-06 55.3 3.4 23 681-703 8-30 (207)
488 3tr0_A Guanylate kinase, GMP k 93.2 0.049 1.7E-06 54.8 3.8 23 681-703 9-31 (205)
489 1vht_A Dephospho-COA kinase; s 93.2 0.037 1.3E-06 56.5 2.9 22 278-300 6-27 (218)
490 1rj9_A FTSY, signal recognitio 93.2 0.087 3E-06 56.9 5.9 33 680-712 103-135 (304)
491 1ex7_A Guanylate kinase; subst 93.2 0.065 2.2E-06 53.4 4.5 22 682-703 4-25 (186)
492 1kao_A RAP2A; GTP-binding prot 93.2 0.57 1.9E-05 44.5 11.3 23 277-299 4-26 (167)
493 1q3t_A Cytidylate kinase; nucl 93.1 0.067 2.3E-06 55.4 4.7 25 276-300 16-40 (236)
494 3b6e_A Interferon-induced heli 93.1 0.16 5.5E-06 51.2 7.5 24 277-300 49-72 (216)
495 3thx_B DNA mismatch repair pro 93.1 0.17 5.8E-06 62.7 8.9 113 279-396 676-798 (918)
496 1vht_A Dephospho-COA kinase; s 93.1 0.057 1.9E-06 55.1 4.0 21 681-701 6-26 (218)
497 3asz_A Uridine kinase; cytidin 93.1 0.077 2.6E-06 53.8 5.0 23 681-703 8-30 (211)
498 1svm_A Large T antigen; AAA+ f 93.0 0.064 2.2E-06 59.7 4.6 37 264-300 155-193 (377)
499 3zvl_A Bifunctional polynucleo 92.9 0.06 2.1E-06 61.0 4.2 25 276-300 258-282 (416)
500 2ius_A DNA translocase FTSK; n 92.9 0.42 1.4E-05 55.1 11.3 37 681-717 169-209 (512)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=6.4e-105 Score=999.81 Aligned_cols=850 Identities=57% Similarity=0.922 Sum_probs=741.9
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002068 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (973)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (973)
|||++||++++.+|..|+.+|+++||++|+|||||+|||.++++.+.++|+++|+|++.++.++...+++.|...+....
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~ 80 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVG 80 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTT
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998876543346
Q ss_pred ccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhcccccccchhhccCCChhHHHHHHHHHhccccccCCCCCchhHH
Q 002068 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEA 237 (973)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 237 (973)
++||+.++++|+.|+.+|+.+|++||+++|||+||+++++.+ ++...++..+....++....+..++..++.
T Consensus 81 ~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (854)
T 1qvr_A 81 QYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGL--------PGLEALKGALKELRGGRTVQTEHAESTYNA 152 (854)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTS--------CCHHHHHHHHTSSCSCCSSCSSCCCCCCSH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccccc--------CCHHHHHHHHHHhccccccccccccccchh
Confidence 899999999999999999999999999999999999876422 888999988877665544444445556688
Q ss_pred HHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 238 LEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 238 l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
|++|+.+|++++++++|+++||+++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..+.+.+++.+
T Consensus 153 l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 153 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred HHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHH
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR 397 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~ 397 (973)
+++.+.+|.++.|+++.+++.++..+....+++||||||+|.+.+.+...+..++.+.|+++++++.+++|++||.++|.
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYR 312 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHH
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHh
Confidence 99999999999999999999999999876568999999999999877776778889999999999999999999999998
Q ss_pred hhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh
Q 002068 398 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 398 ~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~ 477 (973)
+ +.++++|.+||+.|.|++|+.+++.+||+.++.+++.+|++.++++++..++.++.+|+.++++|+++++++|+|++.
T Consensus 313 ~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 313 E-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp H-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred h-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHH
Confidence 8 789999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 478 LKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEID 557 (973)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~ 557 (973)
+++...+.|..++.+++.+.+++.+...+.++.+..+.+++..++.|+..++.+++.+..+|..++..++..+.++++++
T Consensus 392 ~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (854)
T 1qvr_A 392 LRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 471 (854)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccccHHHH
Q 002068 558 RVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSER 637 (973)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~ 637 (973)
.++..++.+++.+++.+++++.|+.++.+++++...... ....+++...++.+++..+++.|+++|...+...+.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~ 546 (854)
T 1qvr_A 472 EVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK-----LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGER 546 (854)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-----SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHH
T ss_pred HHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-----hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHH
Confidence 999999999999999999999999999999998776543 234467788899999999999999999888877777
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 638 ~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
..+..+...++..|+||+.+++.+...+...+.|+.+|++|.+++||+||||||||++|++||+.+++.+.+|+.+||++
T Consensus 547 ~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 547 EKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp HHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 77888888899999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEE
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 797 (973)
+.+.+..+.++|.+++|+|+..++.+++.++..+++|||||||+++++++++.|+++|++|+++++.|+.++|.+++||+
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp CCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred ccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 99998999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM 877 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~ 877 (973)
|||.++..+.+.... +. .+..+.+.+.+.+...|+|+|++|||.++.|.|++.+++..|+..++.++..++...++
T Consensus 707 tsn~~~~~~~~~~~~-~~---~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~ 782 (854)
T 1qvr_A 707 TSNLGSPLILEGLQK-GW---PYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRI 782 (854)
T ss_dssp ECCTTHHHHHHHHHT-TC---CHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ecCcChHHHhhhccc-cc---chHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999987766442110 11 14556677777778999999999999999999999999999999999999999988888
Q ss_pred ceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCCCcEEEEEcC
Q 002068 878 KMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLD 955 (973)
Q Consensus 878 ~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~~ 955 (973)
.+.++++++++|++++|++.+|+|+|+++|++.+..++++.++.+++.+|++|.|+++ +++++|.+..
T Consensus 783 ~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 850 (854)
T 1qvr_A 783 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG----------PAGLVFAVPA 850 (854)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC----------TTSCEEESCC
T ss_pred eEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE----------CCEEEEEecC
Confidence 8999999999999999999999999999999999999999999999999999999987 5788887543
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=4e-97 Score=920.26 Aligned_cols=750 Identities=47% Similarity=0.799 Sum_probs=632.9
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002068 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (973)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (973)
|||++||++++++|..|+++|+++||++|+|||||+|||.++++.+.++|+++|+|++.++.++...+++.|... ..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~---~~ 77 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS---QT 77 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTC---SS
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC---CC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999887553 35
Q ss_pred ccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhccccccCC----CCC
Q 002068 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQ----DPE 232 (973)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~----~~~ 232 (973)
++||+.++++|+.|+.+|+.+|++||+++|||+||++++ +.+.++|+++|++.+.+++.+....+....... .++
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSN 157 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 899999999999999999999999999999999999886 778899999999999999999887765433221 344
Q ss_pred chhHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCC
Q 002068 233 GKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 312 (973)
Q Consensus 233 ~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~ 312 (973)
..++.|++|+.+|++++++++++++||++++++++++.|+++.++|+||+||||||||++|+++|+.+.++++|..+.++
T Consensus 158 ~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~ 237 (758)
T 3pxi_A 158 ANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (758)
T ss_dssp THHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred hhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccC
Q 002068 313 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 392 (973)
Q Consensus 313 ~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~ 392 (973)
+++.+|+ |.+|.|+++.+++.+++.+.. .+++||||| +..++++.|++.++++.+++|++||
T Consensus 238 ~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~at~ 299 (758)
T 3pxi_A 238 RVMTLDM-----GTKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (758)
T ss_dssp CEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred eEEEecc-----cccccchHHHHHHHHHHHHHh-cCCEEEEEc------------CchhHHHHHHHHHhcCCEEEEeCCC
Confidence 9999987 677999999999999999876 467899999 2367889999999999999999999
Q ss_pred chHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
..+|++++.+|++|.|||+.|.|+.|+.+++.+||+.+...++.++++.++++++..++.++.+|++++++|++++++++
T Consensus 300 ~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 473 EAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSI 552 (973)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~ 552 (973)
.|++.+.+.....|..+..+++.+.+++.+...+..+.+ .++...++.++..++.+++.+...|..+.
T Consensus 380 ~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--------- 447 (758)
T 3pxi_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKKSWKEKQ--------- 447 (758)
T ss_dssp HHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHSGGGHHH---------
T ss_pred HHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence 999999999889999999999988888777665433222 12233333333333333333333332211
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCCccc
Q 002068 553 KEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKL 632 (973)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~ 632 (973)
......++.+++..++..|+++|+..+
T Consensus 448 -----------------------------------------------------~~~~~~v~~~~i~~~v~~~~~ip~~~~ 474 (758)
T 3pxi_A 448 -----------------------------------------------------GQENSEVTVDDIAMVVSSWTGVPVSKI 474 (758)
T ss_dssp -----------------------------------------------------HCC---CCTHHHHHHHHTTC-------
T ss_pred -----------------------------------------------------cccCcccCHHHHHHHHHHHhCCChHHh
Confidence 012456889999999999999999999
Q ss_pred cHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEE
Q 002068 633 QQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR 712 (973)
Q Consensus 633 ~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~ 712 (973)
...+...+..+...+...++||+.++..+..++...+.+..+|.+|.+++||+||||||||++|+++|+.+++.+.+|++
T Consensus 475 ~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 475 AQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred hHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred eccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 713 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 713 i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
+||+++.+.+..+ ++.+++.++..+++|||||||+++++++++.|+++|++|++++..|+.+++.+
T Consensus 555 i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 620 (758)
T 3pxi_A 555 IDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRN 620 (758)
T ss_dssp EEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTT
T ss_pred Eechhcccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCC
Confidence 9999997754332 35788899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI 872 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~ 872 (973)
++||+|||.+... ...+...+...|+|+|++|||.+|.|+||+.+++..|+..++.++.+++
T Consensus 621 ~~iI~ttn~~~~~------------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 682 (758)
T 3pxi_A 621 TILIMTSNVGASE------------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL 682 (758)
T ss_dssp CEEEEEESSSTTC------------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCChhh------------------HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999986432 1123334566799999999999999999999999999999999999999
Q ss_pred HhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCCCcEEEE
Q 002068 873 ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFR 952 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~ 952 (973)
...++.+.++++++++|++.+|++.+|+|+|+++|++.+..++++.++.+.+.+|++|.|+++ +++++|.
T Consensus 683 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~~----------~~~~~~~ 752 (758)
T 3pxi_A 683 KEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE----------DGEFVVK 752 (758)
T ss_dssp HTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEES----------SSSEEEE
T ss_pred HhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEE----------CCEEEEE
Confidence 888889999999999999999999999999999999999999999999999999999999998 6899998
Q ss_pred EcC
Q 002068 953 RLD 955 (973)
Q Consensus 953 ~~~ 955 (973)
..+
T Consensus 753 ~~~ 755 (758)
T 3pxi_A 753 TTA 755 (758)
T ss_dssp ECC
T ss_pred Eec
Confidence 754
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=7.9e-92 Score=874.57 Aligned_cols=739 Identities=40% Similarity=0.662 Sum_probs=643.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCCCC--CCCcc
Q 002068 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQR-QPKVLGE--TAGSM 159 (973)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~-~~~~~~~--~~~~~ 159 (973)
||++++++|..|+.+|+++||++|+|||||+|||.+ +.+.++|+++|+|++.++.++...+++ .|...+. ...++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~--~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSN--PSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTS--HHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcC--cHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCC
Confidence 999999999999999999999999999999999985 458899999999999999999999988 7765331 24689
Q ss_pred CChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhccc------c--c--cC
Q 002068 160 LGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQ------S--V--ID 228 (973)
Q Consensus 160 ~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~~------~--~--~~ 228 (973)
+|+.++++|+.|+.+|+.+|++||+++|||+||++++ +.+.++|+.+|++.+.+.+.+....... . . ..
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNS 159 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC------------------
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999999999877 6678999999999999988876542211 0 1 00
Q ss_pred CCCCchhHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcc
Q 002068 229 QDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA 308 (973)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~ 308 (973)
..++..++.|++|+.+|++++++++|+++||++.+++++++.|+++.++|+||+||||||||++|+++++.+.++.+|..
T Consensus 160 ~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~ 239 (758)
T 1r6b_X 160 EEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_dssp ---------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG
T ss_pred cccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 12233567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC-chhhHHHHHhhhhcCCCEEE
Q 002068 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRC 387 (973)
Q Consensus 309 l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~-~~~~~~~~L~~~l~~g~i~i 387 (973)
+.+++++.++++.+..+.++.|+++.+++.+++.+... +++||||||+|.+.+++... +..++.+.|+++++++.+++
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 318 (758)
T 1r6b_X 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_dssp GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEE
T ss_pred hcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEE
Confidence 99999999999999988899999999999999988653 47899999999999877653 57888999999999999999
Q ss_pred EEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHH
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a 467 (973)
|++||.++|.+++..|++|.+||+.|.|+.|+.+++.+||+.+...++..+++.++++++..++.++.+|+.++++|+++
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 99999999988899999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (973)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~ 547 (973)
++++++|++..++....
T Consensus 399 i~lld~a~~~~~~~~~~--------------------------------------------------------------- 415 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVS--------------------------------------------------------------- 415 (758)
T ss_dssp HHHHHHHHHHHHHSSSC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccc---------------------------------------------------------------
Confidence 99999988765431000
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCC
Q 002068 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (973)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~ 627 (973)
.....|+.+++..++..++++
T Consensus 416 -----------------------------------------------------------~~~~~v~~~di~~~~~~~~~i 436 (758)
T 1r6b_X 416 -----------------------------------------------------------KRKKTVNVADIESVVARIARI 436 (758)
T ss_dssp -----------------------------------------------------------CCCCSCCHHHHHHHHHHHSCC
T ss_pred -----------------------------------------------------------ccCCccCHHHHHHHHHHhcCC
Confidence 012357889999999999999
Q ss_pred CCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC
Q 002068 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (973)
Q Consensus 628 p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~ 707 (973)
|+..+...+...+..+.+.+...++||++++..|..++...+.|+.+|++|.+++||+||||||||++|+++|+.+ +
T Consensus 437 p~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~ 513 (758)
T 1r6b_X 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G 513 (758)
T ss_dssp CCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T
T ss_pred CccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c
Confidence 9998888888888899999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcE
Q 002068 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 708 ~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
.+++++||+++.+.+.++.++|.++||+|+.+++.+++.++.++++||||||||++++++++.|+++||+|++++..|+.
T Consensus 514 ~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEE
T ss_pred CCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCE
Confidence 88999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EeccCEEEEEecCCChhhhhcc-CCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNM-DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
++|.|++||+|||.+...+.+. .+... ......+.+.+...|+|+|++|||.+|.|+||+.+++..|+..++.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIH------QDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccc------cchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence 9999999999999987655432 11000 0111334455677899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCC
Q 002068 867 RVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQ 946 (973)
Q Consensus 867 ~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~ 946 (973)
++..++...++.+.++++++++|++++|++++|+|+|+++|++.+..++++.++.|++..|++|.|++++ .+
T Consensus 668 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--------~~ 739 (758)
T 1r6b_X 668 ELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDK--------EK 739 (758)
T ss_dssp HHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEEEG--------GG
T ss_pred HHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEeC--------Cc
Confidence 9999998888889999999999999999999999999999999999999999999999999999999972 01
Q ss_pred CcEEEEEcCCCCCcccc
Q 002068 947 QKLVFRRLDTSSDASAA 963 (973)
Q Consensus 947 ~~l~~~~~~~~~~~~~~ 963 (973)
++++|......++..++
T Consensus 740 ~~~~~~~~~~~~~~~~~ 756 (758)
T 1r6b_X 740 NELTYGFQSAQKHKAEA 756 (758)
T ss_dssp TEEEEEEEETTC-----
T ss_pred eeEEEEEcccccccccc
Confidence 34999887666655544
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=1.9e-61 Score=565.32 Aligned_cols=440 Identities=42% Similarity=0.719 Sum_probs=381.3
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002068 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (973)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (973)
|||++||++++++|..|+.+|+++||++|+|||||+|||.++++.+.++|+++|+|++.++..+...+++.+... ..
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~---~~ 77 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS---QT 77 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTC---SS
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCCC---CC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998877543 35
Q ss_pred ccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhcccccc----CCCCC
Q 002068 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVI----DQDPE 232 (973)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~----~~~~~ 232 (973)
++||+.++++|+.|+.+|+.+|++||+++|||+||++++ +.+.++|..+|++.+.+++.+....+..... ...++
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSN 157 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCcccccccCcCCc
Confidence 899999999999999999999999999999999999887 7788999999999999999998876543321 12334
Q ss_pred chhHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCC
Q 002068 233 GKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 312 (973)
Q Consensus 233 ~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~ 312 (973)
...+.|.+|+.+|++++++++|+++||++.++++++++++++.++|+||+||||||||++|+++|+.+..+++|..+.+.
T Consensus 158 ~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 158 ANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp THHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred cCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccC
Q 002068 313 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 392 (973)
Q Consensus 313 ~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~ 392 (973)
+++.+|++ .++.|+++.+++.+++.+... +++||||| +..++++.|++.+++|.+++|++||
T Consensus 238 ~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~-~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~at~ 299 (468)
T 3pxg_A 238 RVMTLDMG-----TKYRGEFEDRLKKVMDEIRQA-GNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (468)
T ss_dssp CEECC---------------CTTHHHHHHHHHTC-CCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred eEEEeeCC-----ccccchHHHHHHHHHHHHHhc-CCeEEEEe------------CchhHHHHHHHhhcCCCEEEEecCC
Confidence 99999987 458899999999999998764 57899999 2367889999999999999999999
Q ss_pred chHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHH
Q 002068 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld 472 (973)
..+|++++.++++|.+||+.|.|+.|+.+++..||+.++.+++.++++.++++++.+++.++.+|+.++.+|++++++++
T Consensus 300 ~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHH
Confidence 99999989999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 473 EAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEH 541 (973)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~ 541 (973)
.|++++++.....|..+..++..+..++.+........ .-++...++.+...++.+++++..+|..
T Consensus 380 ~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~---d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 445 (468)
T 3pxg_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ---EFEKAASLRDTEQRLREQVEDTKKSWKE 445 (468)
T ss_dssp HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHC---CSHHHHHHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887766443322 2356667777777788888887777765
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.4e-38 Score=380.32 Aligned_cols=459 Identities=21% Similarity=0.314 Sum_probs=293.3
Q ss_pred CCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+|++|.|.++.++.+.+.+ ....+.++||+||||||||+||+++|.++ +.+++.+++
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~~ 271 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLING 271 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEEH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEEh
Confidence 6788999876555554432 12356789999999999999999999998 899999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc---hhhHHHHHhhhh----cCCCEEEEEccC
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPML----GRGELRCIGATT 392 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~---~~~~~~~L~~~l----~~g~i~iI~at~ 392 (973)
+++.+ +|.|+.+..++.+|..+.. ..|+||||||+|.+.+.+.... ...+.+.|+..+ +++.+.+|+|||
T Consensus 272 ~~l~s--k~~gese~~lr~lF~~A~~-~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 272 PEIMS--KLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHHS--SCTTHHHHHHHHHHHHHTT-SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred HHhhc--ccchHHHHHHHHHHHHHHH-cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 99874 5899999999999999975 4689999999999997665432 233444455444 367899999999
Q ss_pred chHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHH
Q 002068 393 LDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ 469 (973)
..+ .+|++|+| ||+ .|.|+.|+.++|.+||+.++...... ++..+..++..+.+|. +.....
T Consensus 349 ~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----~dvdl~~lA~~T~Gfs-----gaDL~~ 413 (806)
T 3cf2_A 349 RPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHV-----GADLAA 413 (806)
T ss_dssp STT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----TTCCHHHHHHHCCSCC-----HHHHHH
T ss_pred Chh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhcCCCC-----HHHHHH
Confidence 997 69999999 998 79999999999999998766533221 2223667777777664 334555
Q ss_pred HHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 470 LVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRI 549 (973)
Q Consensus 470 lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~ 549 (973)
++.+|+..+..+. ... ..+..+.. ..
T Consensus 414 Lv~eA~~~A~~r~-------------~~~-----i~~~~~~~--~~---------------------------------- 439 (806)
T 3cf2_A 414 LCSEAALQAIRKK-------------MDL-----IDLEDETI--DA---------------------------------- 439 (806)
T ss_dssp HHHHHHHHHHHHH-------------HHH-----GGGTCCCC--SH----------------------------------
T ss_pred HHHHHHHHHHHhc-------------ccc-----cccccccc--ch----------------------------------
Confidence 5555543321110 000 00000000 00
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhCCCC
Q 002068 550 QSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPV 629 (973)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~ 629 (973)
+ . +....++.+|+...+........
T Consensus 440 -----------------------------------e----------~----------~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 440 -----------------------------------E----------V----------MNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp -----------------------------------H----------H----------HHHCEECTTHHHHHHSSSSCCCC
T ss_pred -----------------------------------h----------h----------hccceeeHHHHHHHHHhCCCccc
Confidence 0 0 00012334444433322211000
Q ss_pred ccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHcc----CCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC
Q 002068 630 SKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFN 705 (973)
Q Consensus 630 ~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~----~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~ 705 (973)
... .......-|..+.|.+++++.|.+.+...... .....+|...+||+||||||||++|+++|..+
T Consensus 465 r~~-------~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-- 535 (806)
T 3cf2_A 465 RET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-- 535 (806)
T ss_dssp CCC-------CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--
T ss_pred ccc-------cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--
Confidence 000 00001123678899999999888877542110 00011222359999999999999999999999
Q ss_pred CCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH--------------HHHHHH
Q 002068 706 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVF 771 (973)
Q Consensus 706 ~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~L 771 (973)
+.+|+.++++++... ++|..... ...++..+++..++||||||||.+.+ .+.+.|
T Consensus 536 -~~~f~~v~~~~l~s~-----~vGese~~-----vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~l 604 (806)
T 3cf2_A 536 -QANFISIKGPELLTM-----WFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp -TCEEEECCHHHHHTT-----TCSSCHHH-----HHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHH
T ss_pred -CCceEEeccchhhcc-----ccchHHHH-----HHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHH
Confidence 789999999887543 23333221 24667777888899999999998742 378999
Q ss_pred HHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEc
Q 002068 772 LQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVF 849 (973)
Q Consensus 772 l~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f 849 (973)
|..||.-. ...+++||+|||. ...++|+++. |||..|.|
T Consensus 605 L~~mdg~~---------~~~~V~vi~aTN~------------------------------p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 605 LTEMDGMS---------TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHHSSC---------SSSSEEEECC-CC------------------------------SSSSCHHHHSTTTSCCEEEC
T ss_pred HHHHhCCC---------CCCCEEEEEeCCC------------------------------chhCCHhHcCCCcceEEEEE
Confidence 99998521 1246889999997 3347888886 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHH-HHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 850 QPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDA-AIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 850 ~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
+.++.++..+|++.++++ .. ++++ -++.|++. ...|....|..+++.+...++-+.+.
T Consensus 646 ~lPd~~~R~~il~~~l~~---------~~--~~~~~dl~~la~~--t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 646 PLPDEKSRVAILKANLRK---------SP--VAKDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp -----CHHHHTTTTTSSC---------C----CCC------------------CHHHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHhcC---------CC--CCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877632 11 2222 14556653 34566778999999888777766553
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=8.7e-36 Score=331.09 Aligned_cols=306 Identities=62% Similarity=1.030 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 635 SEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 635 ~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
.+.+.+..+...+.+.++||+.+++.+...+...+.++.+|.+|.+++||+||||||||++|++||+.+.+...+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 34567888999999999999999999999999999888999999889999999999999999999999988788999999
Q ss_pred cccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 715 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 715 ~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
|+.+......+.++|.+++++|+...+.+.+.+..++++||||||+|++++++++.|+++|+++.+++..|..+++++++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 99998888889999999999998877889999999999999999999999999999999999999999889999999999
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD 874 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~ 874 (973)
||+|||.+...+....+.... ++.+.+.+.+.+...|+|+|++||+.++.|.|++.+++..|+..++.++...+..
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~----~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWP----YERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCC----SSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred EEEecccCHHHHHhhhccccc----HHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988777665443222 2234455555667889999999999999999999999999999999999998887
Q ss_pred cCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeeeccccCCCCCCCcEEEEEc
Q 002068 875 RKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRL 954 (973)
Q Consensus 875 ~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~ 954 (973)
.+..+.++++++++|++++|++.+|+|+|++++++.+..++++.++.+++++|++|.|+++ +++++|.+.
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~----------~~~~~~~~~ 308 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG----------PAGLVFAVP 308 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEEC----------SSSEEEECC
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEE----------CCeEEEEec
Confidence 7788999999999999999988889999999999999999999999999999999999998 789999864
No 7
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=9.1e-31 Score=323.84 Aligned_cols=421 Identities=23% Similarity=0.337 Sum_probs=272.3
Q ss_pred hcCCCCCCCCchHHHHHHHHHhcc-------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 250 SAGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l~~-------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
.+-.|++++|.+..++++.+.+.. ..+.++||+||||||||++|++++..+ +.+++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~ 268 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 268 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEE
Confidence 345788999999888777776532 445679999999999999999999987 788999
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCch---hhHHHHHhhhhc----CCCEEEEE
Q 002068 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIG 389 (973)
Q Consensus 317 l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~g~i~iI~ 389 (973)
+++..+.. .+.|+.+..+..+|..+... .++++||||+|.+.+.+..... ..+.+.|...++ +..+.+|+
T Consensus 269 v~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 269 INGPEIMS--KLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp EEHHHHSS--SSTTHHHHHHHHHHHHHHHH-CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred EEchHhhh--hhhhhHHHHHHHHHHHHHhc-CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 99888763 47799999999999998765 5789999999999876543321 233444555443 56899999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
+||..+ .+|+++.+ ||. .+.++.|+.+++.+||+.+..++....++ .+..++..+.+|.. ..
T Consensus 346 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~-----~l~~la~~t~g~~g-----~d 410 (806)
T 1ypw_A 346 ATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-----DLEQVANETHGHVG-----AD 410 (806)
T ss_dssp ECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC-----CTHHHHHSCSSCCH-----HH
T ss_pred ccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc-----hhHHHHHhhcCcch-----HH
Confidence 999986 68999998 997 68999999999999998776543222222 23444555544432 12
Q ss_pred HHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002068 467 AIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVM 546 (973)
Q Consensus 467 a~~lld~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l 546 (973)
...+...+........... .
T Consensus 411 l~~l~~ea~~~a~r~~~~~--------------------i---------------------------------------- 430 (806)
T 1ypw_A 411 LAALCSEAALQAIRKKMDL--------------------I---------------------------------------- 430 (806)
T ss_dssp HHHHHHHHHHHHHHHTTTT--------------------T----------------------------------------
T ss_pred HHHHHHHHHHHHHhhhccc--------------------c----------------------------------------
Confidence 2222222211110000000 0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHhhhC
Q 002068 547 TRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTG 626 (973)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~~~~~~~ 626 (973)
.+.. ..+ ... . +....++..++...+.....
T Consensus 431 ------------------------~~~~-------------~~~---~~~----~-----~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 431 ------------------------DLED-------------ETI---DAE----V-----MNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp ------------------------SCHH-------------HHC---CHH----H-----HTTCCCCTTHHHHHHHHSCC
T ss_pred ------------------------chhh-------------hcc---chh----h-----hhhhhhhhhhhhccccccCc
Confidence 0000 000 000 0 00012233333333332211
Q ss_pred CCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHcc----CCCCCCCceEEEeecCCCCcHHHHHHHHHHH
Q 002068 627 IPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASY 702 (973)
Q Consensus 627 ~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~----~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~ 702 (973)
...... ........|..+.|++.+++.|...+...... ....-.|..++||+||||||||++|++||..
T Consensus 462 s~~~~~-------~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 462 SALRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCC-------CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred hhhhhh-------cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 100000 00011234678999999999887766431110 0111123346999999999999999999999
Q ss_pred hcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC--------------HHHH
Q 002068 703 MFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVF 768 (973)
Q Consensus 703 l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~v~ 768 (973)
+ +.+++.++++++... ++|.....+ ..++..++...++||||||||++. ..++
T Consensus 535 ~---~~~~i~v~~~~l~~~-----~~g~~~~~i-----~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~ 601 (806)
T 1ypw_A 535 C---QANFISIKGPELLTM-----WFGESEANV-----REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp H---TCCCCCCCCSSSTTC-----CTTTSSHHH-----HHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHH
T ss_pred h---CCCEEEEechHhhhh-----hcCccHHHH-----HHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHH
Confidence 9 678999999887543 233332211 345666666777999999999862 4578
Q ss_pred HHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceE
Q 002068 769 NVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEY 846 (973)
Q Consensus 769 ~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~ 846 (973)
+.|++.|+... ...+++||+|||. ...++|+|++ ||+..
T Consensus 602 ~~LL~~ld~~~---------~~~~v~vI~tTN~------------------------------~~~ld~allrpgRf~~~ 642 (806)
T 1ypw_A 602 NQILTEMDGMS---------TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHTTCC---------------CCBCCCCCBS------------------------------CGGGSCTTSSGGGTTSC
T ss_pred HHHHHHHhccc---------ccCCeEEEEecCC------------------------------cccCCHHHhCccccCce
Confidence 89999998532 2357889999997 2346788887 99999
Q ss_pred EEcCCCCHHHHHHHHHHHHH
Q 002068 847 IVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 847 i~f~~l~~~~l~~I~~~~l~ 866 (973)
|.|++++.++..+|++.++.
T Consensus 643 i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 643 IYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCCCCCCCSHHHHHTTTTTS
T ss_pred eecCCCCHHHHHHHHHHHhc
Confidence 99999999999999988774
No 8
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.94 E-value=4.5e-27 Score=266.63 Aligned_cols=276 Identities=21% Similarity=0.346 Sum_probs=186.9
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHH----HccCCC--CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecc
Q 002068 642 HLEEELHKRVVGQDPAVKSVAEAIQRS----RAGLSD--PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (973)
Q Consensus 642 ~l~~~l~~~v~Gq~~~i~~l~~~i~~~----~~~~~~--~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (973)
.+...+.+.|+||+.+++.|..++... +.+... ...+..++||+||||||||++|++||+.+ +.+|+.++|
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 455666778999999999999888432 222211 11233479999999999999999999999 789999999
Q ss_pred ccccchhhhhhhcCCCCCcccccccchhhHHHH-------hCCCeEEEEccccccCHH--------------HHHHHHHh
Q 002068 716 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSD--------------VFNVFLQI 774 (973)
Q Consensus 716 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~--------------v~~~Ll~~ 774 (973)
+.+... +|+|+...+.+...+. .++++||||||||++++. +++.|+++
T Consensus 85 ~~l~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~ 153 (363)
T 3hws_A 85 TTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKL 153 (363)
T ss_dssp HHHTTC-----------HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHH
T ss_pred HHhccc-----------ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHH
Confidence 976432 2444433344444443 345789999999999876 99999999
Q ss_pred hcCCe---EecCCCcEEeccCEEEEEecCC---------ChhhhhccC-------CCCC-----CccchHHHHHHHHH--
Q 002068 775 LDDGR---VTDSQGRTVSFTNTVIIMTSNV---------GSQYILNMD-------DETF-----PKETAYETIKQRVM-- 828 (973)
Q Consensus 775 le~g~---~~~~~g~~v~~~~~iiI~tsN~---------~~~~l~~~~-------~~~~-----~~~~~~~~~~~~~~-- 828 (973)
|| |. +.+..|+.+++.++++|+|||. +.+.+.+.. ++.. ........+.+.+.
T Consensus 154 le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~ 232 (363)
T 3hws_A 154 IE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPE 232 (363)
T ss_dssp HH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHH
T ss_pred hc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHH
Confidence 99 54 3444566555555555555554 554443210 0000 00011122222211
Q ss_pred HHHHhccChhhhcccceEEEcCCCCHHHHHHHHHH----HHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHH
Q 002068 829 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVK 904 (973)
Q Consensus 829 ~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~----~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 904 (973)
......|+|+|++|||.++.|.|++.+++.+|+.. .+.++.+.+...++.+.++++++++|++++|++++|+|+|+
T Consensus 233 ~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 312 (363)
T 3hws_A 233 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLR 312 (363)
T ss_dssp HHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHH
T ss_pred HHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHH
Confidence 11233499999999999999999999999999998 77777778877788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 905 RVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 905 r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
++|++.+.+++++.... ..-..+.|+.+
T Consensus 313 ~~ie~~~~~~l~~~~~~---~~~~~~~I~~~ 340 (363)
T 3hws_A 313 SIVEAALLDTMYDLPSM---EDVEKVVIDES 340 (363)
T ss_dssp HHHHHHHHHHHHSTTTC---CCSEEEECHHH
T ss_pred HHHHHHHHHHHHhcccc---cCCceeEEcHH
Confidence 99999999988754322 11145666655
No 9
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.91 E-value=3.8e-24 Score=243.81 Aligned_cols=277 Identities=20% Similarity=0.309 Sum_probs=184.3
Q ss_pred HHHHHhhccccccchHHHHHHHHHH----HHHHccC-------C----------CCCCCceEEEeecCCCCcHHHHHHHH
Q 002068 641 LHLEEELHKRVVGQDPAVKSVAEAI----QRSRAGL-------S----------DPHRPIASFMFMGPTGVGKTELAKAL 699 (973)
Q Consensus 641 ~~l~~~l~~~v~Gq~~~i~~l~~~i----~~~~~~~-------~----------~~~~p~~~~Ll~Gp~GtGKT~lA~~l 699 (973)
..+.+.|.+.|+||+++++.|..++ .+.+.|. . ...++..++||+||||||||++|+++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 4567778889999999999999888 3333221 0 01122347999999999999999999
Q ss_pred HHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH-------hCCCeEEEEccccccCHH------
Q 002068 700 ASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSD------ 766 (973)
Q Consensus 700 a~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~------ 766 (973)
|+.+ +.+++.++|+.+.. .+|.|....+.+...+. .+.++||||||||++++.
T Consensus 93 a~~l---~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~ 158 (376)
T 1um8_A 93 AKHL---DIPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSI 158 (376)
T ss_dssp HHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------
T ss_pred HHHh---CCCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCce
Confidence 9999 67899999987643 13444333333444432 346789999999999988
Q ss_pred --------HHHHHHHhhcCCeE--ecCCCcE--------EeccCEEEEEecCCC-hhh-hhccC-----CCCCCccc--h
Q 002068 767 --------VFNVFLQILDDGRV--TDSQGRT--------VSFTNTVIIMTSNVG-SQY-ILNMD-----DETFPKET--A 819 (973)
Q Consensus 767 --------v~~~Ll~~le~g~~--~~~~g~~--------v~~~~~iiI~tsN~~-~~~-l~~~~-----~~~~~~~~--~ 819 (973)
+++.|+++|+.+.+ .+..|.. +...|++||+|+|.. .+. +.... +....... .
T Consensus 159 ~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~ 238 (376)
T 1um8_A 159 TRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE 238 (376)
T ss_dssp -----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTT
T ss_pred ecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccc
Confidence 99999999998754 3333444 334566667766631 111 11100 00000000 0
Q ss_pred HHHH-HHHHHHH-HHhccChhhhcccceEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhcCCceecCHHHHHHHHhcC
Q 002068 820 YETI-KQRVMDA-ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQLLGSLG 893 (973)
Q Consensus 820 ~~~~-~~~~~~~-l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 893 (973)
...+ ....... ....|.|+|++||+.++.|+|++.+++..|+. .++.++.+.+...+..+.++++++++|++++
T Consensus 239 ~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 318 (376)
T 1um8_A 239 QEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 318 (376)
T ss_dssp TTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred hhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHh
Confidence 0000 0000111 13468999999999999999999999999998 4666666777667788999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 894 YDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 894 ~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
|++.+|+|+|++++++.+..++++.... .+..+.|+.+
T Consensus 319 ~~~~~~~R~L~~~le~~~~~~~~~~~~~----~~~~~~i~~~ 356 (376)
T 1um8_A 319 LERKTGARGLRAIIEDFCLDIMFDLPKL----KGSEVRITKD 356 (376)
T ss_dssp HHTTCTGGGHHHHHHHHHHHHHHTGGGG----TTSEEEECHH
T ss_pred cccccCcHHHHHHHHHHHHHHHhhccCC----CCCEEEEeHH
Confidence 9988999999999999999988876543 4566777765
No 10
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.91 E-value=5.4e-24 Score=208.05 Aligned_cols=144 Identities=19% Similarity=0.333 Sum_probs=134.6
Q ss_pred CCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCC
Q 002068 77 RITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETA 156 (973)
Q Consensus 77 ~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~ 156 (973)
+.||++||++++++|..|+.+|++++|++|+|||||+||++++++.+.++|+++|+|++.++..+...+++.|...+ .
T Consensus 1 ~~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~~--~ 78 (146)
T 3fh2_A 1 QAMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQPTT--G 78 (146)
T ss_dssp CGGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCCCC--S
T ss_pred CchhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCCCc--C
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999887433 4
Q ss_pred CccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhc
Q 002068 157 GSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRG 222 (973)
Q Consensus 157 ~~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~ 222 (973)
.+++|+.++++|+.|+.+|+.+|++||+++|||+||++++ +.+.++|+++|++.+.+++.+....+
T Consensus 79 ~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 79 HIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999875 77889999999999999999887654
No 11
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.90 E-value=1e-23 Score=206.93 Aligned_cols=146 Identities=22% Similarity=0.365 Sum_probs=126.9
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002068 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (973)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (973)
|||++||++++++|..|+.+|+++||++|+|||||+|||+++++.+.++|+++|+|++.++..++..+++.|...+....
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~ 80 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998876542245
Q ss_pred ccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhcccccccchhhccCCChhHHHHHHHHHhcc
Q 002068 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGR 223 (973)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~~~~~~~L~~~gi~~~~l~~~i~~~~~~ 223 (973)
+++|+.++++|+.|+.+|+.+|++||+++|||+|++++++.+.++|+.+|++.+.+++.+..++++
T Consensus 81 ~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~~~gi~~~~l~~~l~~~rg~ 146 (148)
T 1khy_A 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGG 146 (148)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHHHTTCCHHHHHHHHHC----
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 899999999999999999999999999999999999656667899999999999999998877654
No 12
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.90 E-value=2e-23 Score=205.41 Aligned_cols=144 Identities=19% Similarity=0.372 Sum_probs=129.2
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002068 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (973)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (973)
||+++||++++++|..|+.+|+++||++|+|||||+|||.++++.+.++|+++|+|++.++..++..+++.|...+ .
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~~---~ 77 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEMSQ---T 77 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------C
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCcccc---c
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999886543 5
Q ss_pred ccCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhccc
Q 002068 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQ 224 (973)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~~~ 224 (973)
++||+.++++|+.|+.+|+.+|++||+++|||+|+++++ +.+.++|+.+|++.+.+++.+.+.+++.
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~~ 145 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNN 145 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 899999999999999999999999999999999999876 5667999999999999999998887643
No 13
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.90 E-value=1.8e-23 Score=204.00 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=130.8
Q ss_pred ChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCc
Q 002068 79 TQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGS 158 (973)
Q Consensus 79 ~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (973)
+|++||++++++|..|+.+|+++||++|+|||||+|||.++++.+.++|+++|+|++.++..+...+++.|. .+ ..+
T Consensus 4 ~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~~--~~~ 80 (145)
T 3fes_A 4 NFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-IS--EDI 80 (145)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-CC--SCC
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC--CCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999887 32 468
Q ss_pred cCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHH
Q 002068 159 MLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAI 220 (973)
Q Consensus 159 ~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~ 220 (973)
++|+.++++|+.|+.+|+.+|++||+++|||+||++++ +.+.++|+++|++.+.+++.+...
T Consensus 81 ~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~ 143 (145)
T 3fes_A 81 VLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDM 143 (145)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 678899999999999999988754
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.89 E-value=3.3e-23 Score=211.72 Aligned_cols=193 Identities=72% Similarity=1.175 Sum_probs=167.6
Q ss_pred hHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeE
Q 002068 235 YEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (973)
Q Consensus 235 ~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (973)
++.|++++.+|.+++++..|++++|++++++++...+.+..+.+++|+||||||||++|+.+++.+.....+....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 46788999999999999999999999999999999998877889999999999999999999999988777777778899
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 315 ~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
+.+++..+..+..+.|.....+..++..+....+++||||||+|.+.+.+...+..++.+.|+.+++.+++.+|++||..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 99999888877777888888888888887766668899999999998665444456678889999999999999999999
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISIL 427 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il 427 (973)
++...+.+++++.+||..|.++.|+.+++.+||
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 887777889999999999999999999988765
No 15
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.3e-22 Score=223.27 Aligned_cols=199 Identities=24% Similarity=0.331 Sum_probs=155.9
Q ss_pred CCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+|++|.|.++.++.+.+.+ ....+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVS 214 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEE
Confidence 47899999998777766543 23567899999999999999999999999 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHH---HHHhhhhc----CCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAG---NLLKPMLG----RGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~---~~L~~~l~----~g~i~iI 388 (973)
.+.+. .+|.|+.+..++.+|..++.. .||||||||+|.+.+.+... +..... +.|+..++ ..++.+|
T Consensus 215 ~s~l~--sk~vGese~~vr~lF~~Ar~~-aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 215 GAELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp GGGGS--CSSTTHHHHHHHHHHHHHHHT-CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred hHHhh--ccccchHHHHHHHHHHHHHHh-CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 99988 469999999999999999875 58999999999998765432 222232 33333333 5689999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
+|||.++ .+||||+| ||+ .|+|+.|+.++|.+||+.++.++....++ .+..++..+.+|. +.
T Consensus 292 aATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv-----dl~~lA~~t~G~S-----GA 356 (405)
T 4b4t_J 292 MATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI-----NLRKVAEKMNGCS-----GA 356 (405)
T ss_dssp EEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC-----CHHHHHHHCCSCC-----HH
T ss_pred eccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHCCCCC-----HH
Confidence 9999998 79999999 998 79999999999999999877643322222 3677888887664 44
Q ss_pred HHHHHHHHHHhhh
Q 002068 466 KAIDLVDEAAAKL 478 (973)
Q Consensus 466 ~a~~lld~a~~~~ 478 (973)
....++.+|+..+
T Consensus 357 Di~~l~~eA~~~A 369 (405)
T 4b4t_J 357 DVKGVCTEAGMYA 369 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667777776544
No 16
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.89 E-value=1.8e-22 Score=222.26 Aligned_cols=228 Identities=19% Similarity=0.280 Sum_probs=178.5
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++|++.++..+...+...... + .++||+||||||||++|++|++.+...+.+|+.++|+.+......+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~------~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS------D-ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST------T-SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCC------C-CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 46899999999999988865321 1 2699999999999999999999987778899999999998777778899
Q ss_pred CCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 729 GAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 729 G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
|...| +.|... ...+.+..+.+++||||||+.++++.|..|+++|+++.+....+......++.||+|||.....+.
T Consensus 75 g~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 98765 334322 223455566678999999999999999999999999887654444334457889999998543322
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
. ...|+++|++||+. .|.+||+. .+++..++..++.++...+... ...++++
T Consensus 153 ~-----------------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~~~~s~~ 207 (304)
T 1ojl_A 153 S-----------------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--VKGFTPQ 207 (304)
T ss_dssp H-----------------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--CCCBCHH
T ss_pred H-----------------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--ccCCCHH
Confidence 2 35699999999964 58899999 6899999999998776654332 3579999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++++|..+.|++| +|+|++++++.+.
T Consensus 208 a~~~L~~~~wpGn--vReL~~~l~~~~~ 233 (304)
T 1ojl_A 208 AMDLLIHYDWPGN--IRELENAIERAVV 233 (304)
T ss_dssp HHHHHHHCCCSSH--HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCC--HHHHHHHHHHHHH
Confidence 9999999988766 8999999988653
No 17
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.88 E-value=4.8e-22 Score=215.07 Aligned_cols=227 Identities=18% Similarity=0.299 Sum_probs=168.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
++.++|++.++..+...+...... + .++||+||||||||++|+++++.+...+.+++.++|+.+......+.+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~------~-~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPL------D-KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTS------C-SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhCC------C-CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 466899999999998888765321 1 269999999999999999999998766789999999998766556778
Q ss_pred cCCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 728 ~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
+|...+ |.|... ...+.+..+.++|||||||+.+++++|+.|+++|+++.+....+......++.||+|||.....+
T Consensus 78 ~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~ 155 (265)
T 2bjv_A 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (265)
T ss_dssp HCCC-----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH
T ss_pred cCCcccccccccc--cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH
Confidence 887654 333221 12244556678899999999999999999999999998765444444446789999999864332
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCH--HHHHHHHHHHHHHHHHHHHhcCCc--eec
Q 002068 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDR--DQISSIVRLQLDRVQKRIADRKMK--MQV 881 (973)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~--~~l~~I~~~~l~~~~~~~~~~~~~--l~~ 881 (973)
.. ...|+++|++||+ ..|.++|++. +++..++..++.++.... +.. ..+
T Consensus 156 ~~-----------------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~---~~~~~~~~ 209 (265)
T 2bjv_A 156 VN-----------------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREI---KLPLFPGF 209 (265)
T ss_dssp HH-----------------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHT---TCSSCCCB
T ss_pred HH-----------------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHh---CCCcccCc
Confidence 22 3468999999996 4789999986 789999888887665443 333 379
Q ss_pred CHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 882 TDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 882 ~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+++++++|..+.|+++ +|+|++++++.+
T Consensus 210 ~~~a~~~L~~~~~~gn--~reL~~~l~~~~ 237 (265)
T 2bjv_A 210 TERARETLLNYRWPGN--IRELKNVVERSV 237 (265)
T ss_dssp CHHHHHHHHHSCCTTH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Confidence 9999999999888765 899999998865
No 18
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.88 E-value=6.3e-22 Score=218.99 Aligned_cols=250 Identities=21% Similarity=0.373 Sum_probs=185.5
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHHH--ccCCC---CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecc
Q 002068 641 LHLEEELHKRVVGQDPAVKSVAEAIQRSR--AGLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (973)
Q Consensus 641 ~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~--~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (973)
..+...+.+.++||+.+++.+..++.... .++.. +..+..++||+||||||||++|+++++.+ +.+++.++|
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 35667788899999999999998887521 11110 00112379999999999999999999999 678999999
Q ss_pred ccccchhhhhhhcCCCCCcccccccchhhHHHHh--------CCCeEEEEccccccCHHH------------HHHHHHhh
Q 002068 716 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR--------RPYAVILFDEIEKAHSDV------------FNVFLQIL 775 (973)
Q Consensus 716 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~--------~~~~Vl~lDEid~l~~~v------------~~~Ll~~l 775 (973)
+.+.+. +|+|......+.+.+.. .+++||||||||++++.. ++.|+++|
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 987532 34444333333333322 236899999999998654 99999999
Q ss_pred cCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHH
Q 002068 776 DDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 855 (973)
Q Consensus 776 e~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~ 855 (973)
+++.+....+ .....+++||+++|..... ...++|+|++||+.+|.|+||+.+
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------------~~~l~~~l~~R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------------PSDLIPELQGRLPIRVELTALSAA 205 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSSC--------------------------GGGSCHHHHHTCCEEEECCCCCHH
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccCC--------------------------cccCCHHHHhhCCceEEcCCcCHH
Confidence 9887766544 4566788999998752110 234789999999988999999999
Q ss_pred HHHHHHH----HHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCC-----CCCccHHHHHHHHHHHHHHHHHHHcCCCCC
Q 002068 856 QISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDP-----NYGARPVKRVIQQYVENELAKGILRGEFKD 926 (973)
Q Consensus 856 ~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~-----~~gaR~L~r~i~~~i~~~la~~~l~~~~~~ 926 (973)
++.+|+. .++.++...+...+..+.++++++++|+++.|+. ..++|.+.+.+++.+........ ...
T Consensus 206 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~----~~~ 281 (310)
T 1ofh_A 206 DFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS----DMN 281 (310)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGG----GCT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCc----ccc
Confidence 9999999 5566666666667778899999999999988753 57799999999998776543322 245
Q ss_pred CCEEEEEee
Q 002068 927 EDTIVIDTE 935 (973)
Q Consensus 927 ~~~i~v~~~ 935 (973)
|..+.|+.+
T Consensus 282 ~~~~~i~~~ 290 (310)
T 1ofh_A 282 GQTVNIDAA 290 (310)
T ss_dssp TCEEEECHH
T ss_pred CCEEEEeeH
Confidence 777777654
No 19
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-21 Score=218.97 Aligned_cols=199 Identities=23% Similarity=0.347 Sum_probs=155.2
Q ss_pred CCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+|++|.|.++.++.+.+.+ ....+.++|||||||||||++|+++|..+ +.+++.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEE
Confidence 37889999988777666543 23456789999999999999999999999 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhh---h----cCCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPM---L----GRGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~---l----~~g~i~iI 388 (973)
.+.+. .+|.|+.+..++.+|..+... .|+||||||+|.+...+... +.......+..+ + ..+++.+|
T Consensus 249 ~s~l~--sk~vGesek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 249 GSELI--QKYLGDGPRLCRQIFKVAGEN-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp SGGGC--CSSSSHHHHHHHHHHHHHHHT-CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred HHHhh--hccCchHHHHHHHHHHHHHhc-CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 99988 469999999999999999864 58999999999999766433 222333333333 3 25689999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
+|||.++ .+||||+| ||+ .|+|+.|+.++|.+||+.++.++....++ .+..++..+.+|. +.
T Consensus 326 aATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv-----dl~~LA~~T~GfS-----GA 390 (437)
T 4b4t_I 326 MATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV-----NLETLVTTKDDLS-----GA 390 (437)
T ss_dssp EEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC-----CHHHHHHHCCSCC-----HH
T ss_pred EeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----HH
Confidence 9999998 79999999 998 69999999999999999887643322222 3677788887664 44
Q ss_pred HHHHHHHHHHhhh
Q 002068 466 KAIDLVDEAAAKL 478 (973)
Q Consensus 466 ~a~~lld~a~~~~ 478 (973)
....++.+|+..+
T Consensus 391 DI~~l~~eA~~~A 403 (437)
T 4b4t_I 391 DIQAMCTEAGLLA 403 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667777776554
No 20
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.88 E-value=2.6e-22 Score=204.19 Aligned_cols=185 Identities=76% Similarity=1.225 Sum_probs=161.5
Q ss_pred hHHHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeE
Q 002068 235 YEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (973)
Q Consensus 235 ~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (973)
++.|++|+.+|.+++++..|++++|++.+++.+++.+.+....+++|+||||||||++|+.+++.+.....|....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 2 YQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp -CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred chHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 35678899999999999999999999999999999998877889999999999999999999999988777777678899
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCC-CCchhhHHHHHhhhhcCCCEEEEEccCc
Q 002068 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA-TNGAMDAGNLLKPMLGRGELRCIGATTL 393 (973)
Q Consensus 315 ~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~-~~~~~~~~~~L~~~l~~g~i~iI~at~~ 393 (973)
+.+++..+..+..+.|.....+..++..+...+++.||||||+|.+.+.+. ..+..++.+.|+..++++.+.+|++||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCH
Confidence 999988887777778888888888888887765678999999999986554 3344667888999999999999999999
Q ss_pred hHHHhhhccCHHHHccCceEEecCCC
Q 002068 394 DEYRKYIEKDPALERRFQQVYVDQPN 419 (973)
Q Consensus 394 ~~~~~~~~~d~al~~Rf~~i~~~~p~ 419 (973)
.++.....+++++.+||..|.++.|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHhccHHHHHhcCcccCCCCC
Confidence 98877678999999999999999885
No 21
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.8e-21 Score=219.75 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=155.5
Q ss_pred CCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+|++|.|.++.++.+.+.+ ....+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 47999999998777776542 23567889999999999999999999999 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc---hhhHH---HHHhhhh----cCCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAG---NLLKPML----GRGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~---~~~~~---~~L~~~l----~~g~i~iI 388 (973)
++.+. .+|.|+.+..++.+|..++.. .||||||||+|.+...+...+ ..... +.|+..+ ..+.+.+|
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTK-KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHT-CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhc-CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 99988 469999999999999999865 589999999999997764432 12222 2233333 25689999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
+|||.++ .+||+|+| ||+ .|+|+.|+.++|.+||+.++.++....++ .+..+++.+.+|. +.
T Consensus 353 aATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-----dl~~LA~~T~GfS-----GA 417 (467)
T 4b4t_H 353 FATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-----RWELISRLCPNST-----GA 417 (467)
T ss_dssp EECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-----CHHHHHHHCCSCC-----HH
T ss_pred eCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHCCCCC-----HH
Confidence 9999997 79999999 998 79999999999999999887654322222 2567788887664 34
Q ss_pred HHHHHHHHHHhhh
Q 002068 466 KAIDLVDEAAAKL 478 (973)
Q Consensus 466 ~a~~lld~a~~~~ 478 (973)
....++.+|+..+
T Consensus 418 DI~~l~~eAa~~A 430 (467)
T 4b4t_H 418 ELRSVCTEAGMFA 430 (467)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666777776543
No 22
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.87 E-value=3.2e-21 Score=219.55 Aligned_cols=268 Identities=21% Similarity=0.293 Sum_probs=204.2
Q ss_pred cccccccchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEee
Q 002068 606 SMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFM 685 (973)
Q Consensus 606 ~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~ 685 (973)
+.+..+++.+.+...+....... .+. .+...+..-...-...++|++..++.+.+.+..... .. .+++++
T Consensus 97 dyl~KP~~~~~L~~~i~~~l~~~--~l~-~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~a~----~~---~~vli~ 166 (387)
T 1ny5_A 97 DFLTKPCMLEEIELTINKAIEHR--KLR-KENELLRREKDLKEEEYVFESPKMKEILEKIKKISC----AE---CPVLIT 166 (387)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTT----CC---SCEEEE
T ss_pred EEecCCCCHHHHHHHHHHHHHHH--HHH-HHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHhcC----CC---CCeEEe
Confidence 44556677777777666543211 000 010111110011135789999999999988876432 11 258999
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCC-cccccccchhhHHHHhCCCeEEEEccccccC
Q 002068 686 GPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAH 764 (973)
Q Consensus 686 Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~ 764 (973)
|++||||+.+|++|+....+...+|+.+||+.+.+....+.++|+..| |.|... ...+.+..+.+++||||||+.++
T Consensus 167 Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~ 244 (387)
T 1ny5_A 167 GESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS--SKEGFFELADGGTLFLDEIGELS 244 (387)
T ss_dssp CSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGGCC
T ss_pred cCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc--ccCCceeeCCCcEEEEcChhhCC
Confidence 999999999999999998877899999999999888888999998776 444332 23467778889999999999999
Q ss_pred HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc
Q 002068 765 SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD 844 (973)
Q Consensus 765 ~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d 844 (973)
+++|..|+++|++|.++...|......++.+|++||.+...+.. ...|+++|++|++
T Consensus 245 ~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~-----------------------~g~fr~dl~~rl~ 301 (387)
T 1ny5_A 245 LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK-----------------------EGKFREDLYYRLG 301 (387)
T ss_dssp HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH-----------------------TTSSCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH-----------------------cCCccHHHHHhhc
Confidence 99999999999999988766666666789999999997655443 4569999999996
Q ss_pred e-EEEcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 845 E-YIVFQPLD--RDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 845 ~-~i~f~~l~--~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
. .|.+||+. .+|+..++..++.++..++... ...+++++++.|..+.|++| +|+|+++|++++.
T Consensus 302 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~~~wpGN--vreL~~~i~~~~~ 368 (387)
T 1ny5_A 302 VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTKSAQELLLSYPWYGN--VRELKNVIERAVL 368 (387)
T ss_dssp TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECHHHHHHHHHSCCTTH--HHHHHHHHHHHHH
T ss_pred CCeecCCcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCcH--HHHHHHHHHHHHH
Confidence 4 68889997 4899999999998877665432 24699999999999989876 8999999998664
No 23
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-21 Score=222.86 Aligned_cols=200 Identities=22% Similarity=0.307 Sum_probs=156.1
Q ss_pred cCCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
.-+|++|.|.++.++.+.+.+ ....+.++|||||||||||++|+++|..+ +.+++.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 347899999998887777642 23456789999999999999999999999 9999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHH---HHHhhhhc----CCCEEE
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAG---NLLKPMLG----RGELRC 387 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~---~~L~~~l~----~g~i~i 387 (973)
+++.+. .+|.|+.+..++.+|..+... .||||||||+|.+.+.+... +..... +.|+..++ .+++.+
T Consensus 247 ~~s~l~--~~~vGese~~ir~lF~~A~~~-aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 247 AAPQLV--QMYIGEGAKLVRDAFALAKEK-APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp EGGGGC--SSCSSHHHHHHHHHHHHHHHH-CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred ehhhhh--hcccchHHHHHHHHHHHHHhc-CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence 999988 469999999999999999875 58999999999998766433 222232 33334443 457999
Q ss_pred EEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCc
Q 002068 388 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p 464 (973)
|+|||.++ .+||||.| ||+ .|+|+.|+.++|.+||+.++.++....++ .+..++..+.+|. +
T Consensus 324 IaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~s-----G 388 (434)
T 4b4t_M 324 LAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEFN-----G 388 (434)
T ss_dssp EEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSCC-----H
T ss_pred EEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----H
Confidence 99999997 79999999 998 79999999999999999888765433222 2567788887664 3
Q ss_pred hHHHHHHHHHHhhh
Q 002068 465 DKAIDLVDEAAAKL 478 (973)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (973)
.....++.+|+..+
T Consensus 389 ADi~~l~~eA~~~a 402 (434)
T 4b4t_M 389 AQLKAVTVEAGMIA 402 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665443
No 24
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.87 E-value=3.1e-21 Score=219.30 Aligned_cols=260 Identities=20% Similarity=0.350 Sum_probs=182.3
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHH--HccCCC---CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 642 HLEEELHKRVVGQDPAVKSVAEAIQRS--RAGLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 642 ~l~~~l~~~v~Gq~~~i~~l~~~i~~~--~~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.+.+.+.+.|+||+++++.|..++... +.+... ...+..++||+||||||||++|+++|+.+ +.+|+.++++
T Consensus 8 ~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~~ 84 (444)
T 1g41_A 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (444)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecch
Confidence 566778899999999999998888542 111111 11233479999999999999999999999 7899999987
Q ss_pred cccch-h---h----hhhhc--------------------------------CCCCCc----------------------
Q 002068 717 EYMEK-H---A----VSRLI--------------------------------GAPPGY---------------------- 734 (973)
Q Consensus 717 ~~~~~-~---~----~~~l~--------------------------------G~~~g~---------------------- 734 (973)
.+.+. + + +..++ ....|+
T Consensus 85 ~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~ 164 (444)
T 1g41_A 85 KFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLR 164 (444)
T ss_dssp GGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------------------------------------------
T ss_pred hhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHH
Confidence 76542 1 0 00000 000000
Q ss_pred ----------c----------------ccccc------------------------------------------chhhHH
Q 002068 735 ----------V----------------GYEEG------------------------------------------GQLTEV 746 (973)
Q Consensus 735 ----------~----------------g~~~~------------------------------------------~~l~~~ 746 (973)
+ |..+. ....++
T Consensus 165 rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~a 244 (444)
T 1g41_A 165 EGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKA 244 (444)
T ss_dssp -------------------------------------------------------------CCGGGSCSSCCHHHHHHHH
T ss_pred cCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0 00000 001223
Q ss_pred HHhC-CCeEEEEccccccCH------------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCC
Q 002068 747 VRRR-PYAVILFDEIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDET 813 (973)
Q Consensus 747 ~~~~-~~~Vl~lDEid~l~~------------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~ 813 (973)
+..+ +++|+++|||||+.. .+|+.||++||.......+ ..++..+++||+|......
T Consensus 245 i~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~--------- 314 (444)
T 1g41_A 245 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVA--------- 314 (444)
T ss_dssp HHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSC---------
T ss_pred HHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccC---------
Confidence 3444 678999999999963 2899999999987766544 5789999999999743210
Q ss_pred CCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhcCCceecCHHHHHHH
Q 002068 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQLDRVQKRIADRKMKMQVTDAAIQLL 889 (973)
Q Consensus 814 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~----~~l~~~~~~~~~~~~~l~~~~~a~~~L 889 (973)
. ...+.|+|++||..+|.|++|+.+++.+|+. ..+.++.+.+...++.+.++++|+.+|
T Consensus 315 -~----------------~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i 377 (444)
T 1g41_A 315 -R----------------PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 377 (444)
T ss_dssp -C----------------GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred -C----------------hhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHH
Confidence 0 1125689999999899999999999999994 345666667777899999999999999
Q ss_pred HhcCC-----CCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002068 890 GSLGY-----DPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 935 (973)
Q Consensus 890 ~~~~~-----~~~~gaR~L~r~i~~~i~~~la~~~l~~~~~~~~~i~v~~~ 935 (973)
++.++ ..+.|+|.|++.|++.+.....+.. .. .+.++.|+.+
T Consensus 378 ~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~-~~---~~~~~~i~~~ 424 (444)
T 1g41_A 378 AEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS-DM---NGQTVNIDAA 424 (444)
T ss_dssp HHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG-GC---TTCEEEECHH
T ss_pred HHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcc-cc---CCCeEEEeHH
Confidence 98644 4889999999999998888765543 32 3566777654
No 25
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.7e-21 Score=219.73 Aligned_cols=199 Identities=23% Similarity=0.326 Sum_probs=154.4
Q ss_pred CCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+|++|.|.++.++.+.+.+ ....+.++|||||||||||++|+++|..+ +.+++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 37899999988777666543 23556789999999999999999999999 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc---hhhH---HHHHhhhhc----CCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDA---GNLLKPMLG----RGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~---~~~~---~~~L~~~l~----~g~i~iI 388 (973)
++.+. .+|.|+.+..++.+|..+... .||||||||+|.+.+.+...+ .... .+.|+..++ .+++.+|
T Consensus 248 ~s~l~--sk~~Gese~~ir~~F~~A~~~-~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 248 ASGIV--DKYIGESARIIREMFAYAKEH-EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp GGGTC--CSSSSHHHHHHHHHHHHHHHS-CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred hhhhc--cccchHHHHHHHHHHHHHHhc-CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 99988 469999999999999999864 689999999999987654332 2222 233444443 4579999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
+|||.++ .+||+|+| ||+ .|+|+.|+.++|.+||+.++.++....++ .+..++..+.+|. +.
T Consensus 325 ~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~-----dl~~lA~~t~G~s-----GA 389 (437)
T 4b4t_L 325 MATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF-----DFEAAVKMSDGFN-----GA 389 (437)
T ss_dssp EEESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC-----CHHHHHHTCCSCC-----HH
T ss_pred EecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc-----CHHHHHHhCCCCC-----HH
Confidence 9999997 69999998 598 79999999999999999888754322222 3577788887664 34
Q ss_pred HHHHHHHHHHhhh
Q 002068 466 KAIDLVDEAAAKL 478 (973)
Q Consensus 466 ~a~~lld~a~~~~ 478 (973)
....++.+|+..+
T Consensus 390 Di~~l~~eA~~~a 402 (437)
T 4b4t_L 390 DIRNCATEAGFFA 402 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666777766544
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.86 E-value=8.2e-20 Score=226.49 Aligned_cols=178 Identities=19% Similarity=0.280 Sum_probs=128.8
Q ss_pred CCCCchHHHHHHHHHhccCC-------C--CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 256 PVIGRDDEIRRCIQILSRRT-------K--NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~~-------~--~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
.++|++..++.+...+.+.. + .++||+||||||||++|+++|+.+... +.+++.+|++.+....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEKH 564 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSSC
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhccccc
Confidence 48999998888888764321 1 258999999999999999999998433 6789999999887543
Q ss_pred cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEEEccCc
Q 002068 327 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTL 393 (973)
Q Consensus 327 ~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~at~~ 393 (973)
... ...+..+.....++|||||||+.+. .++++.|+++++.| ++++|+|||.
T Consensus 565 ~~~-------~~~l~~~~~~~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 STS-------GGQLTEKVRRKPYSVVLLDAIEKAH--------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CCC----------CHHHHHHCSSSEEEEECGGGSC--------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ccc-------cchhhHHHHhCCCeEEEEeCccccC--------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 221 1111122223456799999999886 67889999999764 4689999994
Q ss_pred h-----HHHh--hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh-----cCCccCHHHHHHHHHhcc
Q 002068 394 D-----EYRK--YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH-----HGVRISDSALVEAAILSD 455 (973)
Q Consensus 394 ~-----~~~~--~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~-----~~v~i~~~~l~~l~~~s~ 455 (973)
. .+.. .-.+.|+|.+||+ .|.|++|+.+++..|++.++..+... ..+.++++++++++..+.
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 2 1110 0126799999995 78999999999999998887765432 346789999999987653
No 27
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.86 E-value=3.5e-21 Score=217.39 Aligned_cols=226 Identities=19% Similarity=0.317 Sum_probs=185.2
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++|++..+..+...+....... .+++++|++||||+.+|+++++...+.+ +|+.+||+.+.+....+.+|
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~-------~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK-------APVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC-------SCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc-------hhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCChHHHHHHhc
Confidence 357899999988888887654321 1599999999999999999999885543 49999999998888889999
Q ss_pred CCCCC-cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhh
Q 002068 729 GAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (973)
Q Consensus 729 G~~~g-~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~ 807 (973)
|+..| +.|... .-.+.+..+.+++||||||+.+++..|..|+++|++|.++...|......++.+|++||.+.....
T Consensus 201 g~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v 278 (368)
T 3dzd_A 201 GHEKGAFTGALT--RKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEI 278 (368)
T ss_dssp EECSCSSSSCCC--CEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHH
T ss_pred CccccccCCccc--ccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 98776 444332 234567778889999999999999999999999999998876666656678999999998664443
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCCH--HHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDR--DQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~~--~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
. ...|+++|++|+.. .|.+|||.. +|+..++..++.++..++... ...++++
T Consensus 279 ~-----------------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~ 333 (368)
T 3dzd_A 279 K-----------------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN--CFELSEE 333 (368)
T ss_dssp H-----------------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC--CCCBCHH
T ss_pred H-----------------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHH
Confidence 3 45699999999976 588999986 899999999998877665433 3679999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+++.|..+.|++| +|+|+++|++.+
T Consensus 334 a~~~L~~~~wpGN--vreL~n~i~~~~ 358 (368)
T 3dzd_A 334 TKEYLMKQEWKGN--VRELKNLIERAV 358 (368)
T ss_dssp HHHHHHTCCCTTH--HHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcH--HHHHHHHHHHHH
Confidence 9999999999888 799999999865
No 28
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.86 E-value=2.1e-21 Score=192.96 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=123.0
Q ss_pred CCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCC
Q 002068 77 RITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETA 156 (973)
Q Consensus 77 ~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~ 156 (973)
.|||++||++++++|..|+++|+++||++|+|||||+|||+++++.+.++|+++|||++.++..+. .+++.|+..+ .
T Consensus 19 ~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~~~~--~ 95 (171)
T 3zri_A 19 PTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQVLD--T 95 (171)
T ss_dssp HHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCCCCS--S
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCCCCC--C
Confidence 589999999999999999999999999999999999999999999999999999999999999999 9998886543 4
Q ss_pred CccCChhHHHHHHHHHHHHH-HhCCCccChhHHHHHhhcccc--cccchhhcc-CCChhHHHHHHHHH
Q 002068 157 GSMLGRDLEALIQRSREYKK-EYGDSFVSVEHLVLGFTQDQR--FGKQLFRDF-QISLPTLKSAIEAI 220 (973)
Q Consensus 157 ~~~~s~~~~~~l~~A~~~a~-~~g~~~I~~~hlllall~~~~--~~~~~L~~~-gi~~~~l~~~i~~~ 220 (973)
.++||+.++++|+.|+.+|+ ++|++||+++|||+||++++. ...++-..+ .|+.+.+++.+..+
T Consensus 96 ~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~~~ 163 (171)
T 3zri_A 96 YPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMI 163 (171)
T ss_dssp CCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHHHH
Confidence 68999999999999999999 999999999999999998761 122222233 57777777665544
No 29
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=4.6e-21 Score=227.32 Aligned_cols=264 Identities=24% Similarity=0.329 Sum_probs=181.9
Q ss_pred cchhhHHHHHHhhhCCCCccccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCc
Q 002068 612 VTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVG 691 (973)
Q Consensus 612 v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtG 691 (973)
.+...+..++..++++||....... ..+......+++.++|+++++..+...+......... +..+++|+||||||
T Consensus 45 ~e~~~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtG 120 (543)
T 3m6a_A 45 AESSVIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVG 120 (543)
T ss_dssp TTTTHHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSS
T ss_pred chHhHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCC
Confidence 3455678888888999987654321 1233445567788999999999998776654443332 22379999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhC--CCeEEEEccccccCHH---
Q 002068 692 KTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR--PYAVILFDEIEKAHSD--- 766 (973)
Q Consensus 692 KT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~--~~~Vl~lDEid~l~~~--- 766 (973)
||++|++||..+ +.+++.++|+.+.. .+.++|....|+|+..+ .+...+..+ .++|+||||||+++++
T Consensus 121 KTtlar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~-~~~~~~~~a~~~~~vl~lDEid~l~~~~~~ 193 (543)
T 3m6a_A 121 KTSLAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPG-RIIQGMKKAGKLNPVFLLDEIDKMSSDFRG 193 (543)
T ss_dssp HHHHHHHHHHHH---TCEEEEECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC-----
T ss_pred HHHHHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCch-HHHHHHHHhhccCCEEEEhhhhhhhhhhcc
Confidence 999999999999 67899999988744 34556666667776543 334444443 5679999999999987
Q ss_pred -HHHHHHHhhcCCe---EecCC-CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc
Q 002068 767 -VFNVFLQILDDGR---VTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN 841 (973)
Q Consensus 767 -v~~~Ll~~le~g~---~~~~~-g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~ 841 (973)
.++.|+++|+.+. +.+.. +..+++.+++||+|||. ...|+|+|++
T Consensus 194 ~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~------------------------------~~~l~~aL~~ 243 (543)
T 3m6a_A 194 DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN------------------------------LATIPGPLRD 243 (543)
T ss_dssp ----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS------------------------------TTTSCHHHHH
T ss_pred CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc------------------------------cccCCHHHHh
Confidence 5699999998654 33333 66778899999999998 2358899999
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHH
Q 002068 842 RVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM---KMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKG 918 (973)
Q Consensus 842 R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~---~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~ 918 (973)
|| .+|.|++|+.++...|+..++ +.+.+...++ .+.++++++.+|+. .|++..|+|+|++.|++++... +..
T Consensus 244 R~-~vi~~~~~~~~e~~~Il~~~l--~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~vR~L~~~i~~~~~~a-a~~ 318 (543)
T 3m6a_A 244 RM-EIINIAGYTEIEKLEIVKDHL--LPKQIKEHGLKKSNLQLRDQAILDIIR-YYTREAGVRSLERQLAAICRKA-AKA 318 (543)
T ss_dssp HE-EEEECCCCCHHHHHHHHHHTH--HHHHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSSSHHHHHHHHHHHHHH-HHH
T ss_pred hc-ceeeeCCCCHHHHHHHHHHHH--HHHHHHHcCCCcccccCCHHHHHHHHH-hCChhhchhHHHHHHHHHHHHH-HHH
Confidence 99 589999999999999999887 3334444454 67899999999887 4566678999999999977664 333
Q ss_pred HHc
Q 002068 919 ILR 921 (973)
Q Consensus 919 ~l~ 921 (973)
++.
T Consensus 319 ~~~ 321 (543)
T 3m6a_A 319 IVA 321 (543)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 30
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.7e-21 Score=215.25 Aligned_cols=199 Identities=20% Similarity=0.261 Sum_probs=153.5
Q ss_pred CCCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+|+++.|.++.++.+.+.+ ....+.++|||||||||||++|+++|..+ +.+++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 37889999998777776643 23456789999999999999999999999 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhh---HHHHHhhhh----cCCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMD---AGNLLKPML----GRGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~---~~~~L~~~l----~~g~i~iI 388 (973)
++.+. .+|.|+.+..++.+|..++.. .|||+||||+|.+.+.+... +... +.+.|+..+ ...++.+|
T Consensus 239 ~~~l~--~~~~Ge~e~~ir~lF~~A~~~-aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 239 GSEFV--HKYLGEGPRMVRDVFRLAREN-APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp GGGTC--CSSCSHHHHHHHHHHHHHHHT-CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred cchhh--ccccchhHHHHHHHHHHHHHc-CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 99987 468999999999999999864 58999999999998765332 2222 233333333 35679999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEec-CCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCc
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVD-QPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~-~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p 464 (973)
+|||.++ .+||+|.| ||+ .|.|+ .|+.++|..||+.++.+.....+ ..+..++..+.+|. +
T Consensus 316 ~aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~-----~dl~~lA~~t~G~s-----g 380 (428)
T 4b4t_K 316 MATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE-----ADLDSLIIRNDSLS-----G 380 (428)
T ss_dssp EEESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT-----CCHHHHHHHTTTCC-----H
T ss_pred EecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc-----cCHHHHHHHCCCCC-----H
Confidence 9999998 79999999 998 68996 79999999999988874322212 23677788887664 3
Q ss_pred hHHHHHHHHHHhhh
Q 002068 465 DKAIDLVDEAAAKL 478 (973)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (973)
.....++.+|+..+
T Consensus 381 adi~~l~~eA~~~a 394 (428)
T 4b4t_K 381 AVIAAIMQEAGLRA 394 (428)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777766543
No 31
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.82 E-value=3.4e-20 Score=180.69 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=121.9
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCC-CC-CCCcc
Q 002068 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQ-PKVL-GE-TAGSM 159 (973)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~~L~~~gv~~~~l~~~~~~~~~~~-~~~~-~~-~~~~~ 159 (973)
||++++++|..|+.+|+++||++|+|||||+|||.+++ +.++|+++|+|++.++..++..+++. |+.. +. ...++
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 89999999999999999999999999999999998763 89999999999999999999999886 7654 21 13589
Q ss_pred CChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHH
Q 002068 160 LGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIE 218 (973)
Q Consensus 160 ~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~ 218 (973)
||+.++++|+.|+.+|+.+|++||+++|||+||++++ +.+.++|+.+|++.+.+++.+.
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999876 5578999999999999988764
No 32
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.82 E-value=1.2e-18 Score=216.44 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=131.7
Q ss_pred CCCCCchHHHHHHHHHhccC---------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc
Q 002068 255 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 325 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~---------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g 325 (973)
..++|++..++.+...+.+. +..++||+||||||||++|+++++.+ +.+++.+|++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 45899999998888766431 22368999999999999999999998 678999999887532
Q ss_pred c----------cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------------
Q 002068 326 A----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (973)
Q Consensus 326 ~----------~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------ 383 (973)
. .|.|..+.. .+.+.+. ..+++||||||++.+. .++++.|+++++.|
T Consensus 528 ~~~~~l~g~~~g~~g~~~~~--~l~~~~~-~~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQGG--LLTDAVI-KHPHAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHTT--HHHHHHH-HCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCccccc--hHHHHHH-hCCCcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 1 133422221 1233333 3457899999999886 67899999999865
Q ss_pred -CEEEEEccCchH----------------------HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh--
Q 002068 384 -ELRCIGATTLDE----------------------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH-- 437 (973)
Q Consensus 384 -~i~iI~at~~~~----------------------~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~-- 437 (973)
++++|+|||... ..+ .++|+|.+||+ .|.|++|+.+++..|++.++.++...
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK--IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHH--HSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHH--hcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456999998632 111 46799999996 78999999999999998887755322
Q ss_pred ---cCCccCHHHHHHHHHhc
Q 002068 438 ---HGVRISDSALVEAAILS 454 (973)
Q Consensus 438 ---~~v~i~~~~l~~l~~~s 454 (973)
..+.++++++..++..+
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHH
T ss_pred HCCcEEEeCHHHHHHHHHhC
Confidence 14678999999998765
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.82 E-value=3.2e-19 Score=198.39 Aligned_cols=200 Identities=20% Similarity=0.340 Sum_probs=156.3
Q ss_pred hcCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 250 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
.+-+|++++|.+..++.+.+.+. ...+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v 82 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSV 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEE
Confidence 44578899999999888888661 2234679999999999999999999998 8899999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhh-----cCCCEEEEE
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML-----GRGELRCIG 389 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l-----~~g~i~iI~ 389 (973)
+++.+.+ ++.|+.+..++.+|..+... .++||||||+|.+.+.+... ....+.+.|...+ ..+.+++|+
T Consensus 83 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 159 (322)
T 3eie_A 83 SSSDLVS--KWMGESEKLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159 (322)
T ss_dssp EHHHHHT--TTGGGHHHHHHHHHHHHHHT-SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEE
T ss_pred chHHHhh--cccchHHHHHHHHHHHHHhc-CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 9988864 58899999999999988764 57899999999998654322 2233444444444 356799999
Q ss_pred ccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHH
Q 002068 390 ATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~ 468 (973)
+||.++ .+|+++.|||+ .+.++.|+.+++.+||+.++. .....+++..+..++..+.+|. +....
T Consensus 160 atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~l~~la~~t~g~s-----g~di~ 225 (322)
T 3eie_A 160 ATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPCVLTKEDYRTLGAMTEGYS-----GSDIA 225 (322)
T ss_dssp EESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----TCCCCCCHHHHHHHHHTTTTCC-----HHHHH
T ss_pred ecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHcCCCC-----HHHHH
Confidence 999886 69999999997 689999999999999998776 3566778999999999987664 33555
Q ss_pred HHHHHHHh
Q 002068 469 DLVDEAAA 476 (973)
Q Consensus 469 ~lld~a~~ 476 (973)
.++..|..
T Consensus 226 ~l~~~a~~ 233 (322)
T 3eie_A 226 VVVKDALM 233 (322)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55555543
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.81 E-value=3.7e-19 Score=200.27 Aligned_cols=207 Identities=19% Similarity=0.329 Sum_probs=153.4
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCC
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN 311 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~ 311 (973)
.+.....+.+|++++|++..++.+.+.+. ...+.++||+||||||||++|+++|+.+ +
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~----------~ 109 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------N 109 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------T
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------C
Confidence 34455667789999999998888887652 2345689999999999999999999998 8
Q ss_pred CeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc-----CC
Q 002068 312 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-----RG 383 (973)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~-----~g 383 (973)
.+++.++++.+.. .+.|+.+..++.+|..+... .++||||||+|.+.+.+... ....+.+.|+..++ ..
T Consensus 110 ~~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 110 STFFSVSSSDLVS--KWMGESEKLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp CEEEEEEHHHHHS--CC---CHHHHHHHHHHHHHT-SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred CCEEEeeHHHHhh--hhcchHHHHHHHHHHHHHHc-CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 8999999988874 47788899999999888753 57999999999998654322 11233444544443 46
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
.+++|++||.++ .+|++++|||+ .+.++.|+.+++.+||+.++.. .+..+++..+..++..+.+|.
T Consensus 187 ~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t~G~s---- 253 (355)
T 2qp9_X 187 GVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMTEGYS---- 253 (355)
T ss_dssp CEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHTTTCC----
T ss_pred CeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHcCCCC----
Confidence 799999999986 68999999997 6899999999999999887763 455678999999999987663
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
+.....+++.|+..
T Consensus 254 -g~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 254 -GSDIAVVVKDALMQ 267 (355)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 44556666666543
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=6.7e-19 Score=195.47 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=154.9
Q ss_pred cCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+-+|++++|.+..++.+.+.+. ...+.++||+||||||||++|+++|+.+ .+.+++.++
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~ 78 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSIS 78 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEE
Confidence 3478899999988877776542 2344679999999999999999999986 256899999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCch---hhHHHHHhhhh-----cCCCEEEEEc
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPML-----GRGELRCIGA 390 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~---~~~~~~L~~~l-----~~g~i~iI~a 390 (973)
++.+.. ++.|+.+..++.+|..+... .++||||||+|.+.+.+..... ..+.+.|...+ ..+++.+|++
T Consensus 79 ~~~l~~--~~~g~~~~~~~~lf~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~a 155 (322)
T 1xwi_A 79 SSDLVS--KWLGESEKLVKNLFQLAREN-KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp CCSSCC--SSCCSCHHHHHHHHHHHHHT-SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred hHHHHh--hhhhHHHHHHHHHHHHHHhc-CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEe
Confidence 988764 57899999999999988754 5799999999999876544321 22333343333 2467999999
Q ss_pred cCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHH
Q 002068 391 TTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ 469 (973)
||.++ .+|++++|||+ .+.++.|+.+++.+||+.++.. .+..+++..+..++..+.+|. +.....
T Consensus 156 tn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~s-----gadl~~ 221 (322)
T 1xwi_A 156 TNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGYS-----GADISI 221 (322)
T ss_dssp ESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTCC-----HHHHHH
T ss_pred cCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCC-----HHHHHH
Confidence 99986 69999999997 7899999999999999887763 455678999999999987664 335555
Q ss_pred HHHHHHh
Q 002068 470 LVDEAAA 476 (973)
Q Consensus 470 lld~a~~ 476 (973)
+++.|+.
T Consensus 222 l~~~A~~ 228 (322)
T 1xwi_A 222 IVRDALM 228 (322)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666554
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=3.4e-19 Score=197.07 Aligned_cols=222 Identities=21% Similarity=0.327 Sum_probs=166.4
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHH-------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC----
Q 002068 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT---- 706 (973)
Q Consensus 638 ~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~---- 706 (973)
..+..+...++..++|++.+++.|...+.... .|... .++..++||+||||||||++|+++++.+...
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAH-ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCS-SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC
Confidence 34556677777889999999999988775432 34433 3444589999999999999999999988432
Q ss_pred CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc---------CHHHHHHHHHhhcC
Q 002068 707 EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDD 777 (973)
Q Consensus 707 ~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l---------~~~v~~~Ll~~le~ 777 (973)
..+++.++++++... +.|... ..+.+.+..+.++||||||+|.+ ++.+++.|++.|++
T Consensus 99 ~~~~~~~~~~~l~~~------------~~g~~~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQ------------YIGHTA-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165 (309)
T ss_dssp SCCEEEECGGGTCCS------------STTCHH-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH
T ss_pred CCcEEEEcHHHhhhh------------cccccH-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc
Confidence 347899998876322 222211 23456666667899999999977 88999999999986
Q ss_pred CeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHH
Q 002068 778 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 857 (973)
Q Consensus 778 g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l 857 (973)
+ ..+++||+|+|.... + ....++|+|.+||+.+|.|++|+.+++
T Consensus 166 ~-----------~~~~~~i~~~~~~~~----------------~---------~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 166 N-----------RDDLVVILAGYADRM----------------E---------NFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp C-----------TTTCEEEEEECHHHH----------------H---------HHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred C-----------CCCEEEEEeCChHHH----------------H---------HHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 3 246789999986210 0 011246899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhc-------CCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 858 SSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSL-------GYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 858 ~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~-------~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
..|+..++.. . .+.++++++++|+.+ .|.++ +|.+.+.+++.+.....+.+.
T Consensus 210 ~~il~~~l~~-------~--~~~~~~~~~~~l~~~~~~~~~~~~~gn--~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 210 FEIAGHMLDD-------Q--NYQMTPEAETALRAYIGLRRNQPHFAN--ARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHH-------T--TCEECHHHHHHHHHHHHHHTTSSSCCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------c--CCCCCHHHHHHHHHHHHHhccCCCCCc--HHHHHHHHHHHHHHHHHHHHh
Confidence 9999988854 2 367999999999886 44333 899999999988877666554
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=203.36 Aligned_cols=193 Identities=26% Similarity=0.411 Sum_probs=147.7
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCC
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN 311 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~ 311 (973)
.|.+.+++..|++++|++..++.+.+.+. .....++||+||||||||++|+++|..+ +
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~----------~ 173 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES----------N 173 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------T
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------c
Confidence 45556678889999999999999888762 2345789999999999999999999997 8
Q ss_pred CeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc------C
Q 002068 312 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG------R 382 (973)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~------~ 382 (973)
.+++.++++.+.. .+.|..+..+..+|..+... .++||||||||.+....... ....+.+.|...++ .
T Consensus 174 ~~~~~v~~~~l~~--~~~g~~~~~~~~~~~~a~~~-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 174 ATFFNISAASLTS--KYVGEGEKLVRALFAVAREL-QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp CEEEEECSCCC---------CHHHHHHHHHHHHHS-SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred CcEEEeeHHHhhc--cccchHHHHHHHHHHHHHhc-CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 8999999988874 47788888899999988764 57899999999997554322 12334444444443 4
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhccccc
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i 458 (973)
.++++|++||..+ .+++++.+||. .|.|+.|+.+++..||+.++.. ++..++++.+..++..+.+|.
T Consensus 251 ~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 251 DRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp -CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCC
T ss_pred CCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCC
Confidence 5799999999876 68999999997 6899999999999999887763 577889999999999987653
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=3.3e-19 Score=205.77 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=159.3
Q ss_pred hcHHHHHhcCCCCCCCCchHHH---HHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEI---RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i---~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.+|.++++|.+|+++||++..+ +.+...+.....+++||+||||||||++|+.|++.+ +.+++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 5899999999999999999988 777777777777889999999999999999999998 778888875
Q ss_pred ccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHH
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEY 396 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~ 396 (973)
... + ...++.++..+.. ...+.||||||+|.+.. ..++.|++.++.+.+++|++||.+..
T Consensus 84 ~~~--~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------~~q~~LL~~le~~~v~lI~att~n~~ 146 (447)
T 3pvs_A 84 VTS--G-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------SQQDAFLPHIEDGTITFIGATTENPS 146 (447)
T ss_dssp TTC--C-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCGG
T ss_pred ccC--C-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------HHHHHHHHHHhcCceEEEecCCCCcc
Confidence 432 1 2234455555442 24578999999999973 35667889999999999999987764
Q ss_pred HhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhh---cCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHH
Q 002068 397 RKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELH---HGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDE 473 (973)
Q Consensus 397 ~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~---~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~ 473 (973)
+.+++++.+||..+.|.+|+.+++..+++..+...... .++.+++++++.++.++.+. ...++++++.
T Consensus 147 ---~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd------~R~lln~Le~ 217 (447)
T 3pvs_A 147 ---FELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD------ARRALNTLEM 217 (447)
T ss_dssp ---GSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC------HHHHHHHHHH
T ss_pred ---cccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC------HHHHHHHHHH
Confidence 47899999999999999999999999998888753322 45789999999999998643 4478888888
Q ss_pred HHhhhh
Q 002068 474 AAAKLK 479 (973)
Q Consensus 474 a~~~~~ 479 (973)
++....
T Consensus 218 a~~~a~ 223 (447)
T 3pvs_A 218 MADMAE 223 (447)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 877653
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=195.75 Aligned_cols=204 Identities=21% Similarity=0.327 Sum_probs=157.6
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCC
Q 002068 245 LTAMASAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 312 (973)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~ 312 (973)
+..++.+..|++++|++..++.+.+.+. ...+.++||+||||||||++|+++|+.+ +.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~ 143 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----------GA 143 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----------TC
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----------CC
Confidence 3344456788999999999988888763 2456789999999999999999999997 88
Q ss_pred eEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc------CC
Q 002068 313 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG------RG 383 (973)
Q Consensus 313 ~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~------~g 383 (973)
+++.++++.+.. .+.|+.+..++.++..+.. ..++||||||+|.+.+.+... ....+.+.|...++ ..
T Consensus 144 ~~~~i~~~~l~~--~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 144 TFFSISASSLTS--KWVGEGEKMVRALFAVARC-QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp EEEEEEGGGGCC--SSTTHHHHHHHHHHHHHHH-TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred eEEEEehHHhhc--cccchHHHHHHHHHHHHHh-cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 999999998874 4788888889999988765 357899999999998654322 12233444444443 35
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
++++|++||..+ .+++++++||. .+.++.|+.+++.+|++.++.. .+..++++.+..++..+.+|.
T Consensus 221 ~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t~G~s---- 287 (357)
T 3d8b_A 221 RILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQSDAFS---- 287 (357)
T ss_dssp CEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHTTTCC----
T ss_pred CEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHcCCCC----
Confidence 799999999876 68999999998 6899999999999999888763 466789999999999987664
Q ss_pred CchHHHHHHHHHH
Q 002068 463 LPDKAIDLVDEAA 475 (973)
Q Consensus 463 ~p~~a~~lld~a~ 475 (973)
+.....+++.|.
T Consensus 288 -~~dl~~l~~~a~ 299 (357)
T 3d8b_A 288 -GADMTQLCREAS 299 (357)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 334444555443
No 40
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.6e-19 Score=196.19 Aligned_cols=199 Identities=26% Similarity=0.392 Sum_probs=148.1
Q ss_pred hhccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.-|++|.|.+++++.|.+.+... ..|...|+ .+||+||||||||++|+++|..+ +.+|+.+++++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~ 217 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAE 217 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHH
Confidence 34789999999999999988642 23554333 59999999999999999999999 78999999998
Q ss_pred ccchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEe
Q 002068 718 YMEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVT 781 (973)
Q Consensus 718 ~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~ 781 (973)
+... |+|..+ ...++..++...++||||||||.+.+ .+++.||+.||.-.
T Consensus 218 l~sk------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-- 283 (405)
T 4b4t_J 218 LVQK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-- 283 (405)
T ss_dssp GSCS------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT--
T ss_pred hhcc------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC--
Confidence 8654 333221 23567777788889999999998742 25777888887421
Q ss_pred cCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHH
Q 002068 782 DSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISS 859 (973)
Q Consensus 782 ~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~ 859 (973)
...+++||+|||. ...++|+|+. |||..|.|++|+.++..+
T Consensus 284 -------~~~~V~vIaATNr------------------------------pd~LDpAllRpGRfD~~I~i~lPd~~~R~~ 326 (405)
T 4b4t_J 284 -------TSKNIKIIMATNR------------------------------LDILDPALLRPGRIDRKIEFPPPSVAARAE 326 (405)
T ss_dssp -------CCCCEEEEEEESC------------------------------SSSSCHHHHSTTSSCCEEECCCCCHHHHHH
T ss_pred -------CCCCeEEEeccCC------------------------------hhhCCHhHcCCCcCceEEEcCCcCHHHHHH
Confidence 1246889999998 3457889985 999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceecCHH-HHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 860 IVRLQLDRVQKRIADRKMKMQVTDA-AIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 860 I~~~~l~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
|++.+++. .. ++++ -++.|++. ...|....|+.++..+...++
T Consensus 327 Il~~~~~~---------~~--l~~dvdl~~lA~~--t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 327 ILRIHSRK---------MN--LTRGINLRKVAEK--MNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHTT---------SB--CCSSCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC---------CC--CCccCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 99877632 12 2222 15667764 345667888888877655443
No 41
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=2.8e-19 Score=216.90 Aligned_cols=196 Identities=21% Similarity=0.374 Sum_probs=130.9
Q ss_pred CCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+++++.|.++..+.+.+.+. ...+.++||+||||||||++|+++|.++ +.+++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEecc
Confidence 56778888877777666531 2345689999999999999999999998 899999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC------chhhHHHHHhhhhc----CCCEEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLG----RGELRCIG 389 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~------~~~~~~~~L~~~l~----~g~i~iI~ 389 (973)
+++. .+|.|+.+..++.+|..++.. .|+||||||+|.+.+.+... ....+.+.|+..|+ ..+|.+|+
T Consensus 545 ~~l~--s~~vGese~~vr~lF~~Ar~~-~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 545 PELL--TMWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp HHHH--TTTCSSCHHHHHHHHHHHHTT-CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred chhh--ccccchHHHHHHHHHHHHHHc-CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 9988 459999999999999999864 58999999999999765422 11234555555554 45799999
Q ss_pred ccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchH
Q 002068 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~ 466 (973)
|||.++ .+|++++| ||+ .|+|+.|+.++|.+||+.++++.... ++..+..+++.+.+|.+. .
T Consensus 622 aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----~~~dl~~la~~t~g~SGa-----d 686 (806)
T 3cf2_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTNGFSGA-----D 686 (806)
T ss_dssp C-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----CC---------------------C
T ss_pred eCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCCCHH-----H
Confidence 999997 69999999 998 79999999999999998766532221 223466777887777543 4
Q ss_pred HHHHHHHHHh
Q 002068 467 AIDLVDEAAA 476 (973)
Q Consensus 467 a~~lld~a~~ 476 (973)
...++.+|+.
T Consensus 687 i~~l~~~A~~ 696 (806)
T 3cf2_A 687 LTEICQRACK 696 (806)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=6.2e-18 Score=185.88 Aligned_cols=203 Identities=22% Similarity=0.345 Sum_probs=153.2
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHHHhcc------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCe
Q 002068 246 TAMASAGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRK 313 (973)
Q Consensus 246 ~~~~~~~~l~~iiG~~~~i~~li~~l~~------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~ 313 (973)
...+.+..|++++|++..++.+.+.+.. ....++||+||||||||++|+++++.+ +.+
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~~~ 81 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------SAT 81 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------TCE
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCC
Confidence 3344566889999999988888876522 345689999999999999999999997 789
Q ss_pred EEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc-------CC
Q 002068 314 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RG 383 (973)
Q Consensus 314 ~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~g 383 (973)
++.++++.+.. .+.|..+..++.++..+.. ..++||||||+|.+....... ......+.|...++ ..
T Consensus 82 ~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 82 FLNISAASLTS--KYVGDGEKLVRALFAVARH-MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp EEEEESTTTSS--SSCSCHHHHHHHHHHHHHH-TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred eEEeeHHHHhh--cccchHHHHHHHHHHHHHH-cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 99999988764 4678888888888888765 457899999999998665432 12233444444443 14
Q ss_pred CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 384 ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
.+++|++||.++ .+++++.+||+ .+.++.|+.+++..|++.++.. .+..+++..+..++..+.+|..
T Consensus 159 ~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g~~~--- 226 (297)
T 3b9p_A 159 RIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDGYSG--- 226 (297)
T ss_dssp CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTTCCH---
T ss_pred cEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCH---
Confidence 689999999886 68999999997 6899999999999999877763 4667889999999998876532
Q ss_pred CchHHHHHHHHHH
Q 002068 463 LPDKAIDLVDEAA 475 (973)
Q Consensus 463 ~p~~a~~lld~a~ 475 (973)
.....+++.|+
T Consensus 227 --~~l~~l~~~a~ 237 (297)
T 3b9p_A 227 --SDLTALAKDAA 237 (297)
T ss_dssp --HHHHHHHHHHT
T ss_pred --HHHHHHHHHHH
Confidence 23335555544
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=1.1e-17 Score=187.57 Aligned_cols=196 Identities=15% Similarity=0.235 Sum_probs=152.4
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+..++|++.+++.+...+....... .+..++||+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------ 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN----ECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------ 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT----SCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC----CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch------
Confidence 4679999999999999888764321 222369999999999999999999998 678999998765322
Q ss_pred cCCCCCcccccccchhhHHHH-hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecC-------CCcEEeccCEEEEEec
Q 002068 728 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS-------QGRTVSFTNTVIIMTS 799 (973)
Q Consensus 728 ~G~~~g~~g~~~~~~l~~~~~-~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~-------~g~~v~~~~~iiI~ts 799 (973)
+.+...+. .+.++|||||||+.+++..++.|++.++++.+... ....++.+++++|++|
T Consensus 95 -------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 95 -------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp -------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred -------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 23333443 35678999999999999999999999998865432 1223445578999999
Q ss_pred CCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCce
Q 002068 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKM 879 (973)
Q Consensus 800 N~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l 879 (973)
|. ...+.|+|++||+.++.|++++.+++..++...+.. . .+
T Consensus 162 n~------------------------------~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-------~--~~ 202 (338)
T 3pfi_A 162 TR------------------------------AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-------L--NK 202 (338)
T ss_dssp SC------------------------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------T--TC
T ss_pred CC------------------------------ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-------c--CC
Confidence 97 334788999999999999999999999998876643 2 36
Q ss_pred ecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 880 QVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 880 ~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.++++++++|+. .|+++ .|.+.+.+++.+
T Consensus 203 ~~~~~~~~~l~~-~~~G~--~r~l~~~l~~~~ 231 (338)
T 3pfi_A 203 TCEEKAALEIAK-RSRST--PRIALRLLKRVR 231 (338)
T ss_dssp EECHHHHHHHHH-TTTTC--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHCcC--HHHHHHHHHHHH
Confidence 789999999999 67655 788888877643
No 44
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.4e-18 Score=191.16 Aligned_cols=198 Identities=21% Similarity=0.361 Sum_probs=145.9
Q ss_pred hccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-|++|.|.+++++.|.+.+... ..|...|+ .+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~pr----GvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPK----GVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSEL 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCS----EEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGG
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----CCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHh
Confidence 4789999999999999988642 23444333 69999999999999999999999 789999999988
Q ss_pred cchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEec
Q 002068 719 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTD 782 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~ 782 (973)
... |+|..+ ...++..++...++||||||||.+.+ .+++.||+.||.-.
T Consensus 253 ~sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~--- 317 (437)
T 4b4t_I 253 IQK------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD--- 317 (437)
T ss_dssp CCS------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC---
T ss_pred hhc------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC---
Confidence 543 333222 23566777788889999999997642 25566666666311
Q ss_pred CCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHH
Q 002068 783 SQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 783 ~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I 860 (973)
...+++||+|||. ...++|+|+. |||..|.|+.++.++..+|
T Consensus 318 ------~~~~ViVIaATNr------------------------------pd~LDpALlRpGRfD~~I~v~lPd~~~R~~I 361 (437)
T 4b4t_I 318 ------DRGDVKVIMATNK------------------------------IETLDPALIRPGRIDRKILFENPDLSTKKKI 361 (437)
T ss_dssp ------CSSSEEEEEEESC------------------------------STTCCTTSSCTTTEEEEECCCCCCHHHHHHH
T ss_pred ------CCCCEEEEEeCCC------------------------------hhhcCHHHhcCCceeEEEEcCCcCHHHHHHH
Confidence 2247899999998 3457889985 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 861 VRLQLDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
++.++.. +.+++++ ++.|++. ...|....|+.++..+...++
T Consensus 362 l~~~l~~-----------~~l~~dvdl~~LA~~--T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 362 LGIHTSK-----------MNLSEDVNLETLVTT--KDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp HHHHHTT-----------SCBCSCCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-----------CCCCCcCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 9877732 1222222 5667764 345667888888877655443
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.77 E-value=4.9e-18 Score=196.77 Aligned_cols=201 Identities=22% Similarity=0.340 Sum_probs=149.7
Q ss_pred hcCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 250 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
.+-.|++++|.+...+.+.+.+. ...+.++||+||||||||++|+++|..+ .+.+++.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v 199 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSI 199 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEE
Confidence 45578899999998888887652 2345789999999999999999999986 25689999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc-----CCCEEEEE
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-----RGELRCIG 389 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~-----~g~i~iI~ 389 (973)
+++.+.. ++.|+.+..++.+|..+.. ..++||||||+|.+.+.+... ....+.+.|...++ ..++++|+
T Consensus 200 ~~~~l~~--~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVS--KWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC-----------CCCTHHHHHHHHHH-SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHh--hhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 9888764 4778777788889988865 458999999999997654432 12334454554443 46799999
Q ss_pred ccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHH
Q 002068 390 ATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~ 468 (973)
+||.++ .+|++++|||+ .+.++.|+.+++..||+.++.. .+..+++..+..++..+.+|. +....
T Consensus 277 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~s-----gadl~ 342 (444)
T 2zan_A 277 ATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGYS-----GADIS 342 (444)
T ss_dssp EESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTCC-----HHHHH
T ss_pred cCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCC-----HHHHH
Confidence 999986 69999999997 7899999999999999887763 455678999999999987664 33555
Q ss_pred HHHHHHHh
Q 002068 469 DLVDEAAA 476 (973)
Q Consensus 469 ~lld~a~~ 476 (973)
.++..|+.
T Consensus 343 ~l~~~a~~ 350 (444)
T 2zan_A 343 IIVRDALM 350 (444)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66666554
No 46
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.76 E-value=7.9e-17 Score=216.44 Aligned_cols=453 Identities=16% Similarity=0.193 Sum_probs=252.3
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH----------
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---------- 345 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---------- 345 (973)
..++||+||||||||++|+.+.... .+..++.+++++..... .+...++....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~~--------~~~~~i~~~~~~~~~~~g~~~ 1329 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTTE--------HILSALHRHTNYVTTSKGLTL 1329 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCHH--------HHHHHHHHHBCCEEETTTEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCHH--------HHHHHHHHHhhhccccCCccc
Confidence 3689999999999999996655432 25678888887765321 23333433210
Q ss_pred ----hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--------------CEEEEEccCchHHHhhhccCHHHH
Q 002068 346 ----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 346 ----~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~i~iI~at~~~~~~~~~~~d~al~ 407 (973)
.+.++||||||++... .+..|......+|+++++.| ++.+|+|||++.......++++|.
T Consensus 1330 ~P~~~gk~~VlFiDEinmp~--~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1330 LPKSDIKNLVLFCDEINLPK--LDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEBSSSSCEEEEEETTTCSC--CCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cCCCCCceEEEEeccccccc--ccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 1235799999998633 33345667888999998753 478999999985233457999999
Q ss_pred ccCceEEecCCCHHHHHHHHHHHHHHHhhh-cCC-ccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh----hhhh
Q 002068 408 RRFQQVYVDQPNVEDTISILRGLRERYELH-HGV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK----LKME 481 (973)
Q Consensus 408 ~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~-~~v-~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~----~~~~ 481 (973)
|||..+.++.|+.+++..|+..++..+-.. ..+ .+.+.... ..+++-...... .+.+
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~-----------------ati~~y~~v~~~~~~~~k~H 1470 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFAR-----------------ASVHLYNECKARYSTGLQSH 1470 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHH-----------------HHHHHHHHHHHHSCTTTCTT
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-----------------HHHHHHHHHHHHcCCccCCC
Confidence 999999999999999999998887753211 000 01111111 122222222221 1345
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 002068 482 ITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEE-IDRVN 560 (973)
Q Consensus 482 ~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~-~~~~~ 560 (973)
+...+.++..+-+.+.....+. . -.....+.+.|.+||.++...+.+..+ -....
T Consensus 1471 Y~FnlRDLsrv~qGll~~~~~~--~----------------------~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~ 1526 (2695)
T 4akg_A 1471 YLFSPRELTRLVRGVYTAINTG--P----------------------RQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFE 1526 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTS--S----------------------CCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhcCchh--h----------------------hccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555555555543332211000 0 011346888999999998764433210 00011
Q ss_pred HHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccc--------cccchhhHHHHHHhhhCCCCccc
Q 002068 561 LEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLR--------EEVTGSDIAEIVSKWTGIPVSKL 632 (973)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~--------~~v~~~~i~~~~~~~~~~p~~~~ 632 (973)
..+...-.++ ++.. ........+++. ..++..++.+.+.
T Consensus 1527 ~~l~~~~~~~---------f~~~--------------~~~~~~~~~~~f~df~~~~Y~~v~~~~l~~~l~---------- 1573 (2695)
T 4akg_A 1527 QLLYETVDKY---------LPNQ--------------DLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIE---------- 1573 (2695)
T ss_dssp HHHHHHHHHH---------SCCS--------------CCCCCSTTTCCEESSSSSSCEECCHHHHHHHHH----------
T ss_pred HHHHHHHHHH---------hccc--------------chhhhccCCceeeecCCCcceecCHHHHHHHHH----------
Confidence 1111100000 0000 000000000110 0111111111111
Q ss_pred cHHHHHHHHHHH-HhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 633 QQSEREKLLHLE-EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 633 ~~~~~~~l~~l~-~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
+.+.... ....-.++-.+++++.+.+..+..+ .|.||+||+|++|+||++++|..|... +..++
T Consensus 1574 -----~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~-------~p~G~~LLvGvgGsGkqSltrLaa~i~---~~~~f 1638 (2695)
T 4akg_A 1574 -----ERFKTFCDEELEVPMVIHESMVDHILRIDRALK-------QVQGHMMLIGASRTGKTILTRFVAWLN---GLKIV 1638 (2695)
T ss_dssp -----HHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHH-------SSSEEEEEECTTTSCHHHHHHHHHHHT---TCEEE
T ss_pred -----HHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHc-------CCCCCEEEECCCCCcHHHHHHHHHHHh---CCeeE
Confidence 1111111 1122357777889999888777654 567899999999999999999999877 66777
Q ss_pred EeccccccchhhhhhhcCCCCCcccccccchhhHHH----HhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcE
Q 002068 712 RIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVV----RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 712 ~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~----~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
.+.++.-...... ...+...+ .+..+.|++|+|.+-..+.++..+..+|..|.+.+-...
T Consensus 1639 qi~~~~~Y~~~~f---------------~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~- 1702 (2695)
T 4akg_A 1639 QPKIHRHSNLSDF---------------DMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQG- 1702 (2695)
T ss_dssp CCCCCTTCCHHHH---------------HHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCT-
T ss_pred EEEeeCCCCHHHH---------------HHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCH-
Confidence 7766542111000 01222222 245678999999999999999999999999987642100
Q ss_pred EeccCEEEEEecCCChhhhhc-------cCCC-CCCccchHHHHHHHHHHHHH---------------hccChhhhcccc
Q 002068 788 VSFTNTVIIMTSNVGSQYILN-------MDDE-TFPKETAYETIKQRVMDAAR---------------SIFRPEFMNRVD 844 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~-------~~~~-~~~~~~~~~~~~~~~~~~l~---------------~~f~p~ll~R~d 844 (973)
...+.+.+ ..+. .+..+..+..+.+++++.+. -+--|+|+++|
T Consensus 1703 -------------dE~~~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn~c- 1768 (2695)
T 4akg_A 1703 -------------EEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRC- 1768 (2695)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHHHS-
T ss_pred -------------HHHHHHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhcce-
Confidence 00000000 0000 01111222222222222210 01137899998
Q ss_pred eEEEcCCCCHHHHHHHHHHHHH
Q 002068 845 EYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 845 ~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
.+--|.+...+.+..+...++.
T Consensus 1769 tIdWf~~Wp~eAL~~Va~~fl~ 1790 (2695)
T 4akg_A 1769 IINWMGDWDTKTMSQVANNMVD 1790 (2695)
T ss_dssp EEEECCSCCHHHHHHHHHHHSC
T ss_pred eEeecCCCCHHHHHHHHHHHhh
Confidence 7889999999999999888774
No 47
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.9e-18 Score=192.15 Aligned_cols=199 Identities=20% Similarity=0.318 Sum_probs=145.4
Q ss_pred hccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-|+.|.|.+++++.|.+.+... +.|...|+ .+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~pr----GvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPK----GALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 4789999999999999887542 23444333 69999999999999999999999 789999999988
Q ss_pred cchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHhhcCCeEec
Q 002068 719 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTD 782 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~v~~~Ll~~le~g~~~~ 782 (973)
... |+|..+ ...++..++...++||||||||.+. ..+++.||+.||.-.
T Consensus 252 ~~~------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--- 316 (434)
T 4b4t_M 252 VQM------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--- 316 (434)
T ss_dssp CSS------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC---
T ss_pred hhc------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC---
Confidence 543 344222 2355666677778999999999762 125667888887411
Q ss_pred CCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHH
Q 002068 783 SQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 783 ~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I 860 (973)
...+++||+|||. ...++|+|+. |||..|.|++|+.++..+|
T Consensus 317 ------~~~~ViVIaaTNr------------------------------p~~LD~AllRpGRfD~~I~i~lPd~~~R~~I 360 (434)
T 4b4t_M 317 ------SDDRVKVLAATNR------------------------------VDVLDPALLRSGRLDRKIEFPLPSEDSRAQI 360 (434)
T ss_dssp ------SSCSSEEEEECSS------------------------------CCCCCTTTCSTTSEEEEEECCCCCHHHHHHH
T ss_pred ------CCCCEEEEEeCCC------------------------------chhcCHhHhcCCceeEEEEeCCcCHHHHHHH
Confidence 1236789999998 3457889976 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 861 VRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
++.+++. ....-.++ ++.|++. ...|....|+.++..+...++
T Consensus 361 l~~~~~~-------~~~~~dvd---l~~lA~~--t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 361 LQIHSRK-------MTTDDDIN---WQELARS--TDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHH-------SCBCSCCC---HHHHHHH--CSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-------CCCCCcCC---HHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 9887754 11111122 4666664 345667888888887655443
No 48
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=6e-17 Score=176.84 Aligned_cols=201 Identities=24% Similarity=0.400 Sum_probs=153.0
Q ss_pred CCCCCCCCchHHHHHHHHHhcc-------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~~-------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-.|++++|++..++.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 83 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVV 83 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 4678899999999888877633 456789999999999999999999998 88999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhh-------cCCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML-------GRGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l-------~~g~i~iI 388 (973)
++.+.. .+.|..+..+..++..+... .++||||||+|.+.+..... +.....+.|..++ ..+++++|
T Consensus 84 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 84 GSELVK--KFIGEGASLVKDIFKLAKEK-APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp GGGGCC--CSTTHHHHHHHHHHHHHHHT-CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred hHHHHH--hccchHHHHHHHHHHHHHHc-CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 888764 47788888999999888764 57899999999998654332 2233444444433 24589999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCch
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~ 465 (973)
++||..+ .+++++.+ ||. .+.++.|+.+++.+|++..+.... +. .+..+..++..+.+| .+.
T Consensus 161 ~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~l~~~~~g~-----~~~ 225 (285)
T 3h4m_A 161 GATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN----LA-EDVNLEEIAKMTEGC-----VGA 225 (285)
T ss_dssp EECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC----BC-TTCCHHHHHHHCTTC-----CHH
T ss_pred EeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC----CC-CcCCHHHHHHHcCCC-----CHH
Confidence 9999886 68999999 997 689999999999999987765322 11 222356677777654 455
Q ss_pred HHHHHHHHHHhhhhh
Q 002068 466 KAIDLVDEAAAKLKM 480 (973)
Q Consensus 466 ~a~~lld~a~~~~~~ 480 (973)
....+++.|...+..
T Consensus 226 ~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 226 ELKAICTEAGMNAIR 240 (285)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777766543
No 49
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-17 Score=187.31 Aligned_cols=199 Identities=23% Similarity=0.371 Sum_probs=145.6
Q ss_pred hccccccchHHHHHHHHHHHH--------HHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-|++|.|.+++++.|.+.+.. .+.|...|+ .+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~ppr----GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L 279 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPK----GILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL 279 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCS----EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh
Confidence 478999999999999988753 233554443 69999999999999999999999 789999999988
Q ss_pred cchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEec
Q 002068 719 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTD 782 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~ 782 (973)
... |+|..+ ...++..++...++||||||+|.+.. .+++.||+.|+...
T Consensus 280 ~sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 344 (467)
T 4b4t_H 280 VQK------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD--- 344 (467)
T ss_dssp CCC------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC---
T ss_pred hcc------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC---
Confidence 543 333222 23566777788889999999997742 25666777776421
Q ss_pred CCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHH
Q 002068 783 SQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 783 ~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I 860 (973)
...+++||+|||. ...++|+|+. |||..|.|+.++.++..+|
T Consensus 345 ------~~~~ViVIaATNr------------------------------pd~LDpALlRpGRFD~~I~i~lPd~~~R~~I 388 (467)
T 4b4t_H 345 ------PRGNIKVMFATNR------------------------------PNTLDPALLRPGRIDRKVEFSLPDLEGRANI 388 (467)
T ss_dssp ------CTTTEEEEEECSC------------------------------TTSBCHHHHSTTTCCEEECCCCCCHHHHHHH
T ss_pred ------CCCcEEEEeCCCC------------------------------cccCChhhhccccccEEEEeCCcCHHHHHHH
Confidence 2347889999998 3457888885 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 861 VRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
++.+++. ..+.-.++ ++.|++. ...|....|+.++..+...++
T Consensus 389 lk~~l~~-------~~l~~dvd---l~~LA~~--T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 389 FRIHSKS-------MSVERGIR---WELISRL--CPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHTT-------SCBCSSCC---HHHHHHH--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-------CCCCCCCC---HHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 9877632 11111222 4556664 335667888888877655443
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.4e-17 Score=187.27 Aligned_cols=198 Identities=18% Similarity=0.308 Sum_probs=145.7
Q ss_pred hccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-|++|.|.+++++.|.+.+... ..|...|+ .+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~pr----GvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l 251 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPK----GVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGI 251 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 3789999999999999988642 23444333 69999999999999999999999 789999999988
Q ss_pred cchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHhhcCCeEec
Q 002068 719 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTD 782 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~v~~~Ll~~le~g~~~~ 782 (973)
.+. |+|..+ ...++..++...++||||||||.+. ..+++.||..||.-.
T Consensus 252 ~sk------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 316 (437)
T 4b4t_L 252 VDK------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--- 316 (437)
T ss_dssp CCS------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS---
T ss_pred ccc------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc---
Confidence 553 333221 2355667778888999999999764 125677888887421
Q ss_pred CCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHH
Q 002068 783 SQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 783 ~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I 860 (973)
...+++||+|||. ...++|+|+ +|||..|.|+.|+.++..+|
T Consensus 317 ------~~~~vivI~ATNr------------------------------p~~LDpAllRpGRfD~~I~i~lPd~~~R~~I 360 (437)
T 4b4t_L 317 ------NLGQTKIIMATNR------------------------------PDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360 (437)
T ss_dssp ------CTTSSEEEEEESS------------------------------TTSSCTTTTSTTSEEEEECCCCCCHHHHHHH
T ss_pred ------CCCCeEEEEecCC------------------------------chhhCHHHhCCCccceeeecCCcCHHHHHHH
Confidence 1246889999998 345788887 56999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 002068 861 VRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENE 914 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~ 914 (973)
++.++.. ....-.++ ++.|++. ...|....|+.++..+...+
T Consensus 361 l~~~~~~-------~~~~~d~d---l~~lA~~--t~G~sGADi~~l~~eA~~~a 402 (437)
T 4b4t_L 361 FKIHTAK-------VKKTGEFD---FEAAVKM--SDGFNGADIRNCATEAGFFA 402 (437)
T ss_dssp HHHHHHT-------SCBCSCCC---HHHHHHT--CCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-------CCCCcccC---HHHHHHh--CCCCCHHHHHHHHHHHHHHH
Confidence 9887743 11111222 4666663 34567788888887655443
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=3.2e-17 Score=181.19 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=157.6
Q ss_pred CCCCchHHHHHHHHHhc---------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 256 PVIGRDDEIRRCIQILS---------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~---------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
+++|++..++.+.+.+. .....++||+||||||||++|+++++.+.... ...+.+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 49999988887776543 34455799999999999999999999985532 1235579999988
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCC-CchhhHHHHHhhhhcC--CCEEEEEccCchHHH
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT-NGAMDAGNLLKPMLGR--GELRCIGATTLDEYR 397 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~-~~~~~~~~~L~~~l~~--g~i~iI~at~~~~~~ 397 (973)
.+.. .+.|.....+..+|..+ .++||||||+|.+.+.+.. .....+.+.|...++. .++++|++||...+.
T Consensus 109 ~l~~--~~~g~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 109 DLVG--QYIGHTAPKTKEVLKRA----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp GTCC--SSTTCHHHHHHHHHHHH----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred Hhhh--hcccccHHHHHHHHHhc----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 8763 46788788887777765 3569999999999855432 2345677888888874 478999999998877
Q ss_pred hhhccCHHHHccC-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCC--CCchHHHHHHHHH
Q 002068 398 KYIEKDPALERRF-QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR--FLPDKAIDLVDEA 474 (973)
Q Consensus 398 ~~~~~d~al~~Rf-~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r--~~p~~a~~lld~a 474 (973)
.++.++|+|++|| ..|.|+.|+.+++..|++.++.. .++.++++++..++.++.+..... .....+.++++.+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 7778899999999 58999999999999999988875 567899999999988765332211 1133555666666
Q ss_pred Hhh
Q 002068 475 AAK 477 (973)
Q Consensus 475 ~~~ 477 (973)
+..
T Consensus 259 ~~~ 261 (309)
T 3syl_A 259 RLR 261 (309)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 52
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.74 E-value=4.5e-17 Score=175.42 Aligned_cols=201 Identities=19% Similarity=0.294 Sum_probs=139.7
Q ss_pred CCCCCCCCchHHHHHHHHHh---cc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 252 GKLDPVIGRDDEIRRCIQIL---SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l---~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
-+|++++|.+..++.+.+.+ .. ..+.++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 36899999998776665543 11 345678999999999999999999998 788999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC-------chhhHHHHHhhhhc----CCCEEEE
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-------GAMDAGNLLKPMLG----RGELRCI 388 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~-------~~~~~~~~L~~~l~----~g~i~iI 388 (973)
+.+.. .+.|..+..+..+|..+... .++||||||+|.+...+... ......+.|...++ ...+++|
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~a~~~-~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 73 AEFVE--VIGGLGAARVRSLFKEARAR-APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp TTTSS--SSTTHHHHHHHHHHHHHHHT-CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHh--hccChhHHHHHHHHHHHHhc-CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 88763 46777888888899888754 57899999999997544221 11122222222222 3578999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHH-HHHHHHhcccccCCCCCc
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLP 464 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~-l~~l~~~s~~~i~~r~~p 464 (973)
++||..+ .+|+++.+ ||+ .+.|+.|+.+++.+|++.++... +...++.. ...++..+.+| .+
T Consensus 150 ~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~-----~~ 215 (262)
T 2qz4_A 150 ASTNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGF-----SG 215 (262)
T ss_dssp EEESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTC-----CH
T ss_pred ecCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCC-----CH
Confidence 9999886 57899999 996 78999999999999999888753 44444443 45667666544 23
Q ss_pred hHHHHHHHHHHhhhh
Q 002068 465 DKAIDLVDEAAAKLK 479 (973)
Q Consensus 465 ~~a~~lld~a~~~~~ 479 (973)
.....+++.|+..+.
T Consensus 216 ~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 216 ADIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677777765543
No 53
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.74 E-value=2.6e-17 Score=183.01 Aligned_cols=212 Identities=17% Similarity=0.267 Sum_probs=158.0
Q ss_pred ccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
|..|+|++.+++.|...+..... ......+|..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~--- 90 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK--- 90 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT---
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc---
Confidence 57899999999999988854321 111223344479999999999999999999998 788999999876432
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~-----------~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
++|.... ....++..++...++||||||||.+.+ .+++.|+..++.-. ....++
T Consensus 91 --~~g~~~~-----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v 155 (322)
T 3eie_A 91 --WMGESEK-----LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQGV 155 (322)
T ss_dssp --TGGGHHH-----HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCCE
T ss_pred --ccchHHH-----HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCce
Confidence 1221111 112455666677889999999998864 56888888887421 012468
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIA 873 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~ 873 (973)
+||+|||. ...++|++++||+..+.|++++.++..+|++.++.
T Consensus 156 ~vi~atn~------------------------------~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~------- 198 (322)
T 3eie_A 156 LVLGATNI------------------------------PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG------- 198 (322)
T ss_dssp EEEEEESC------------------------------GGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT-------
T ss_pred EEEEecCC------------------------------hhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc-------
Confidence 89999997 34478899999999999999999999999998763
Q ss_pred hcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 874 DRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 874 ~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
+....+++..++.|+... ..|..+.+..+++.....++.+..-.
T Consensus 199 --~~~~~~~~~~l~~la~~t--~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 199 --DTPCVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp --TCCCCCCHHHHHHHHHTT--TTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred --cCCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 234567899999999853 35667889999988887777766543
No 54
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=4.6e-17 Score=182.42 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=146.4
Q ss_pred hhhcHHHHHhcCCCCCCCCchHHHHHHHHHhcc-----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEE
Q 002068 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 315 (973)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~-----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 315 (973)
....|.++++|.+|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~ 84 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIK 84 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEE
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeE
Confidence 345688999999999999999988888877643 445689999999999999999999997 77899
Q ss_pred EEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCC-----------
Q 002068 316 SLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE----------- 384 (973)
Q Consensus 316 ~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~----------- 384 (973)
.+++..+. ..+ .+...+. ....+++|||||+|.+. .+.++.|...++.+.
T Consensus 85 ~~~~~~~~----~~~----~~~~~~~---~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~~~~~~~ 145 (338)
T 3pfi_A 85 TTAAPMIE----KSG----DLAAILT---NLSEGDILFIDEIHRLS--------PAIEEVLYPAMEDYRLDIIIGSGPAA 145 (338)
T ss_dssp EEEGGGCC----SHH----HHHHHHH---TCCTTCEEEEETGGGCC--------HHHHHHHHHHHHTSCC---------C
T ss_pred Eecchhcc----chh----HHHHHHH---hccCCCEEEEechhhcC--------HHHHHHHHHHHHhccchhhcccCccc
Confidence 99876653 112 2223332 23457899999999997 456777777776543
Q ss_pred ---------EEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhc
Q 002068 385 ---------LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (973)
Q Consensus 385 ---------i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s 454 (973)
+++|++||... .++++|.+||. .+.|+.|+.+++..+++..+.. .++.++++++..++..+
T Consensus 146 ~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~ 216 (338)
T 3pfi_A 146 QTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAKRS 216 (338)
T ss_dssp CCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTT
T ss_pred cceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHH
Confidence 78999999976 48899999995 7999999999999999877764 46788999999998866
Q ss_pred ccccCCCCCchHHHHHHHHHHhhhh
Q 002068 455 DRYISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 455 ~~~i~~r~~p~~a~~lld~a~~~~~ 479 (973)
.+ .+..+..+++.+...+.
T Consensus 217 ~G------~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 217 RS------TPRIALRLLKRVRDFAD 235 (338)
T ss_dssp TT------CHHHHHHHHHHHHHHHH
T ss_pred Cc------CHHHHHHHHHHHHHHHH
Confidence 53 34567777777654443
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.74 E-value=9.5e-18 Score=184.64 Aligned_cols=199 Identities=21% Similarity=0.354 Sum_probs=145.7
Q ss_pred cCCCCCCCCchHHHHHHHHHhcc-------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~-------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
+-+|++++|.+..++.+.+.+.. ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v 80 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 80 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEE
Confidence 34678899999887777776532 445679999999999999999999997 7889999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC------chhhHHHHHhhhhc----CCCEEE
Q 002068 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLG----RGELRC 387 (973)
Q Consensus 318 ~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~------~~~~~~~~L~~~l~----~g~i~i 387 (973)
+++.+.. ++.|+.+..++.+|..+... .++||||||+|.+....... ....+.+.|+..++ ..++++
T Consensus 81 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 81 KGPELLT--MWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp CHHHHHH--HHHTTCTTHHHHHHHHHHHT-CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred EhHHHHh--hhcCchHHHHHHHHHHHHhc-CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 9888763 46677777888999988754 57899999999998543211 11233444555443 458999
Q ss_pred EEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCc
Q 002068 388 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p 464 (973)
|++||.++ .+|+++.| ||+ .|.|+.|+.+++.+|++.++.+.... .+..+..++..+.+|. +
T Consensus 158 i~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-----~~~~~~~la~~~~g~s-----g 222 (301)
T 3cf0_A 158 IGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTNGFS-----G 222 (301)
T ss_dssp EEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----SSCCHHHHHHTCSSCC-----H
T ss_pred EEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-----ccchHHHHHHHcCCCC-----H
Confidence 99999987 68999999 997 68999999999999998877643221 1222445666665553 3
Q ss_pred hHHHHHHHHHHhh
Q 002068 465 DKAIDLVDEAAAK 477 (973)
Q Consensus 465 ~~a~~lld~a~~~ 477 (973)
.....+++.|+..
T Consensus 223 ~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 223 ADLTEICQRACKL 235 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555666666544
No 56
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.5e-17 Score=188.80 Aligned_cols=198 Identities=23% Similarity=0.364 Sum_probs=145.4
Q ss_pred hccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-|++|.|.+++++.|.+.+... ..|...|+ .+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr----GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l 242 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR----GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF 242 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc----eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh
Confidence 5789999999999999988542 23554333 69999999999999999999999 789999999987
Q ss_pred cchhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHhhcCCeEec
Q 002068 719 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTD 782 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~v~~~Ll~~le~g~~~~ 782 (973)
... |+|..+ ...++..++...++||||||+|.+. ..+++.||+.||.-.
T Consensus 243 ~~~------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~--- 307 (428)
T 4b4t_K 243 VHK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD--- 307 (428)
T ss_dssp CCS------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC---
T ss_pred hcc------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC---
Confidence 543 333221 2356677778888999999999653 236788888887411
Q ss_pred CCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcC-CCCHHHHHH
Q 002068 783 SQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQ-PLDRDQISS 859 (973)
Q Consensus 783 ~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~-~l~~~~l~~ 859 (973)
...+++||+|||. ...++|+|+. |||..|.|+ +++.++...
T Consensus 308 ------~~~~v~vI~aTN~------------------------------~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~ 351 (428)
T 4b4t_K 308 ------QSTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPSLRDRRERRL 351 (428)
T ss_dssp ------SSCSEEEEEEESC------------------------------SSSCCHHHHSSSSEEEEEECCSSCCHHHHHH
T ss_pred ------CCCCEEEEEecCC------------------------------hhhcChhhhcCCcceEEEEcCCCCCHHHHHH
Confidence 2246899999998 3447888885 999999997 689999999
Q ss_pred HHHHHHHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 860 IVRLQLDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 860 I~~~~l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
|++.++.. . .+++++ ++.|+.. ...|....|+.++..+...++
T Consensus 352 Il~~~~~~-------~----~l~~~~dl~~lA~~--t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 352 IFGTIASK-------M----SLAPEADLDSLIIR--NDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp HHHHHHHS-------S----CBCTTCCHHHHHHH--TTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-------C----CCCcccCHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 99877642 1 222222 5667764 335667888888877654443
No 57
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.73 E-value=2.5e-18 Score=200.26 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=106.7
Q ss_pred HHHHhcC-CCCCCCCchHHHHHHH---HHhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 246 TAMASAG-KLDPVIGRDDEIRRCI---QILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 246 ~~~~~~~-~l~~iiG~~~~i~~li---~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.+..+|. .|++++|+++.++.+. +.+... .+.++||+||||||||++|+++|+.+. .+.+++.+++
T Consensus 27 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~--------~~~~~~~~~~ 98 (456)
T 2c9o_A 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG--------SKVPFCPMVG 98 (456)
T ss_dssp CTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC--------TTSCEEEEEG
T ss_pred CcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC--------CCceEEEEeH
Confidence 3444444 4689999998766544 333332 346899999999999999999999981 0278999999
Q ss_pred ccccccccccchHHHHHHHHHHHHH--HhCCCeEEEEccccccccCCCCCchhh----HH------------------H-
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVT--ESEGQIILFIDEIHTVVGAGATNGAMD----AG------------------N- 374 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~--~~~~~~ILfiDEi~~l~~~~~~~~~~~----~~------------------~- 374 (973)
+.+. .++.|+.+. +..+|..+. ....++||||||+|.+.+.+....... .. +
T Consensus 99 ~~~~--~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 175 (456)
T 2c9o_A 99 SEVY--STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPS 175 (456)
T ss_dssp GGGC--CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHH
T ss_pred HHHH--HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHH
Confidence 8887 458888887 888888772 123578999999999997654331100 00 0
Q ss_pred HHhh----hhcCCCEEEE-EccCchHHHhhhccCHHHHc--cCce---EEecCCCH--HHHHHH
Q 002068 375 LLKP----MLGRGELRCI-GATTLDEYRKYIEKDPALER--RFQQ---VYVDQPNV--EDTISI 426 (973)
Q Consensus 375 ~L~~----~l~~g~i~iI-~at~~~~~~~~~~~d~al~~--Rf~~---i~~~~p~~--~e~~~i 426 (973)
++.. -+..+++++| ++||... .+|+++.| ||+. +.++.|+. ++|.+|
T Consensus 176 ll~~l~~~~~~~~~~v~i~attn~~~-----~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~i 234 (456)
T 2c9o_A 176 IFESLQKERVEAGDVIYIEANSGAVK-----RQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEI 234 (456)
T ss_dssp HHHHHHHTTCCTTEEEEEETTTCCEE-----EEEEETTSCCTTSCSSSSEECCCCSCSEEEEEE
T ss_pred HHHHHhhccCCCCCEEEEEcCCCCcc-----cCChhhcCCcccCcceeEecCCCchhHHHHHHH
Confidence 1111 1235666666 5555543 68888865 8864 56677743 444433
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.73 E-value=3.2e-17 Score=191.02 Aligned_cols=203 Identities=22% Similarity=0.336 Sum_probs=155.8
Q ss_pred HHhcCCCCCCCCchHHHHHHHHHhc-------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeE
Q 002068 248 MASAGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (973)
Q Consensus 248 ~~~~~~l~~iiG~~~~i~~li~~l~-------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (973)
...+..|++++|.+..++++.+.+. ...+.++||+||||||||++|++++..+ +.++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~f 266 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFF 266 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEE
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCE
Confidence 4456688999999999988887664 3456789999999999999999999987 8899
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc---hhhHHHHHhhhhc----CCCEEE
Q 002068 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG----RGELRC 387 (973)
Q Consensus 315 ~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~g~i~i 387 (973)
+.++++.+.+ .+.|+.+..++.+|..+... .++||||||||.+.+.+.... ...+++.|+..++ ..++++
T Consensus 267 v~vn~~~l~~--~~~g~~~~~~~~~f~~A~~~-~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 267 FLINGPEIMS--KLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp EEEEHHHHHT--SCTTHHHHHHHHHHHHHHHT-CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred EEEEchHhhh--hhcchhHHHHHHHHHHHHhc-CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 9999998874 47799999999999998764 578999999999997654331 2345566666664 568999
Q ss_pred EEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCc
Q 002068 388 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p 464 (973)
|+|||.++ .+++++++ ||. .|.|+.|+.+++.+||+..+..+... .+..+..++..+.+|. +
T Consensus 344 IaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-----~~~~l~~la~~t~g~s-----~ 408 (489)
T 3hu3_A 344 MAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHV-----G 408 (489)
T ss_dssp EEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-----TTCCHHHHHHTCTTCC-----H
T ss_pred EEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-----chhhHHHHHHHccCCc-----H
Confidence 99999986 68999999 897 68999999999999998776532211 2223556666666543 4
Q ss_pred hHHHHHHHHHHhhh
Q 002068 465 DKAIDLVDEAAAKL 478 (973)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (973)
.....+++.|...+
T Consensus 409 ~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 409 ADLAALCSEAALQA 422 (489)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666665443
No 59
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=2.6e-17 Score=183.27 Aligned_cols=197 Identities=18% Similarity=0.214 Sum_probs=155.1
Q ss_pred hhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCc-eEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 242 GKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 242 ~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~-LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
..+|.++|+|.+|++++|++..++.+...+.....+++ |++||||||||++|+++++.+ +.+++.++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~ 82 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGS 82 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETT
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEccc
Confidence 35799999999999999999999999998887766666 556779999999999999998 7889999865
Q ss_pred cccccccccchHHHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCch
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 394 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~ 394 (973)
... ...++..+...... +.+.||||||+|.+.+ .+.++.|+.+++. +++++|++||..
T Consensus 83 ~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 83 DCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp TCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred ccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 421 23344444443332 2568999999999962 3466778888874 578999999987
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh---hhcCCccCH-HHHHHHHHhcccccCCCCCchHHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE---LHHGVRISD-SALVEAAILSDRYISGRFLPDKAIDL 470 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~---~~~~v~i~~-~~l~~l~~~s~~~i~~r~~p~~a~~l 470 (973)
. .+++++.+||..+.|+.|+.+++.+|++.+...+. ...++.+++ +++..++..+.+.+. .+++.
T Consensus 147 ~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R------~a~~~ 215 (324)
T 3u61_B 147 D-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR------KTIGE 215 (324)
T ss_dssp G-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT------HHHHH
T ss_pred c-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH------HHHHH
Confidence 6 68899999999999999999998888766655433 346888988 999999998875443 58888
Q ss_pred HHHHH
Q 002068 471 VDEAA 475 (973)
Q Consensus 471 ld~a~ 475 (973)
++.++
T Consensus 216 L~~~~ 220 (324)
T 3u61_B 216 LDSYS 220 (324)
T ss_dssp HHHHG
T ss_pred HHHHh
Confidence 88876
No 60
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=176.50 Aligned_cols=213 Identities=19% Similarity=0.290 Sum_probs=156.8
Q ss_pred hccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (973)
-|+.|.|++.+++.|.+.+..... .......|..++||+||||||||++|+++|+.+. +.+|+.++++++...
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~-- 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK-- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh--
Confidence 367899999999999988864321 1111123334799999999999999999999873 467999999876432
Q ss_pred hhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 724 ~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
.+|.... ....++..++...++||||||||.+. ..+++.|+..++.-. ....+
T Consensus 86 ---~~g~~~~-----~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 86 ---WLGESEK-----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp ---SCCSCHH-----HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred ---hhhHHHH-----HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 1222111 11245556667788999999999883 357788888887521 12257
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI 872 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~ 872 (973)
++||+|||. ...++|++++||+..+.+++++.++..+|+..++.
T Consensus 150 v~vI~atn~------------------------------~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~------ 193 (322)
T 1xwi_A 150 ILVLGATNI------------------------------PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG------ 193 (322)
T ss_dssp EEEEEEESC------------------------------TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT------
T ss_pred EEEEEecCC------------------------------cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh------
Confidence 889999997 23367899999999999999999999999988763
Q ss_pred HhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 873 ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
+....+++..++.|++. ...|..+.|+.+++.+...++-+.+.
T Consensus 194 ---~~~~~l~~~~l~~la~~--t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 194 ---TTQNSLTEADFRELGRK--TDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp ---TCCBCCCHHHHHHHHHT--CTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ---cCCCCCCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23456789999999985 34566789999999988888776654
No 61
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.72 E-value=8.9e-17 Score=180.86 Aligned_cols=212 Identities=17% Similarity=0.264 Sum_probs=154.9
Q ss_pred hccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (973)
-|..|+|++.+++.|...+..... ......+|..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~-- 123 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK-- 123 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh--
Confidence 367899999999999988754311 011112333469999999999999999999999 688999999876432
Q ss_pred hhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 724 ~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~-----------~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
++|.... ....++..++...++||||||||.+.+ .+++.|+..|+.-. ....+
T Consensus 124 ---~~g~~~~-----~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 ---WMGESEK-----LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp ---C---CHH-----HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred ---hcchHHH-----HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 1222111 012345555667789999999999873 36888888887411 12346
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI 872 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~ 872 (973)
++||+|||. ...++|++++||+..+.|++++.++...|+..++.
T Consensus 188 v~vI~atn~------------------------------~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~------ 231 (355)
T 2qp9_X 188 VLVLGATNI------------------------------PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG------ 231 (355)
T ss_dssp EEEEEEESC------------------------------GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT------
T ss_pred eEEEeecCC------------------------------cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh------
Confidence 889999998 23467889999999999999999999999987763
Q ss_pred HhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 873 ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
...+.+++..++.|+... ..|..+.|..+++.++..++.+...
T Consensus 232 ---~~~~~~~~~~l~~la~~t--~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 232 ---DTPSVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp ---TSCBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hCCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 223457889999999863 3566789999999988888876553
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=8.2e-17 Score=185.86 Aligned_cols=197 Identities=23% Similarity=0.345 Sum_probs=144.8
Q ss_pred CCCCCCCchHHHHHHHHHh---cc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 253 KLDPVIGRDDEIRRCIQIL---SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l---~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
+|++++|.++.++.+.+++ .. ..+.++||+||||||||++|+++|..+ +.+++.++++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~ 83 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGS 83 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHH
Confidence 6889999998766665543 21 235679999999999999999999998 7899999998
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---c---hhhHHHHHhhhhc----CCCEEEEEc
Q 002068 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---G---AMDAGNLLKPMLG----RGELRCIGA 390 (973)
Q Consensus 321 ~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~---~~~~~~~L~~~l~----~g~i~iI~a 390 (973)
++.. .+.|....+++.+|..+... .++||||||+|.+...++.. + .....+.|...++ ...+++|++
T Consensus 84 ~~~~--~~~g~~~~~~r~lf~~A~~~-~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 160 (476)
T 2ce7_A 84 DFVE--LFVGVGAARVRDLFAQAKAH-APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAA 160 (476)
T ss_dssp GTTT--CCTTHHHHHHHHHHHHHHHT-CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEE
T ss_pred HHHH--HHhcccHHHHHHHHHHHHhc-CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEe
Confidence 8764 47788888899999988764 58999999999998654321 1 1223444444443 457999999
Q ss_pred cCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHH-HHHHHHHhcccccCCCCCchH
Q 002068 391 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLPDK 466 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~-~l~~l~~~s~~~i~~r~~p~~ 466 (973)
||.++ .+|+++.| ||+ .|.|+.|+.+++.+|++..+.+. .+.++ .+..++..+.+|. +..
T Consensus 161 Tn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~G~s-----gad 224 (476)
T 2ce7_A 161 TNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTPGFV-----GAD 224 (476)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCC-----HHH
T ss_pred cCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcCCCc-----HHH
Confidence 99987 58999998 998 78999999999999998766532 22222 2566777666553 345
Q ss_pred HHHHHHHHHhhh
Q 002068 467 AIDLVDEAAAKL 478 (973)
Q Consensus 467 a~~lld~a~~~~ 478 (973)
...+++.|+..+
T Consensus 225 L~~lv~~Aal~A 236 (476)
T 2ce7_A 225 LENLVNEAALLA 236 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777776544
No 63
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3e-16 Score=163.82 Aligned_cols=199 Identities=23% Similarity=0.276 Sum_probs=151.5
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~ 322 (973)
.+|.++++|..|++++|++..++.+.+.+......+++|+||||||||++++.+++.+.... ....++.++++..
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccc
Confidence 46788999999999999999999999999877777899999999999999999999874321 1345777776543
Q ss_pred cccccccchHHHHHHHHHHHHHH-----hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchH
Q 002068 323 IAGAKYRGEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDE 395 (973)
Q Consensus 323 ~~g~~~~g~~e~~l~~~~~~~~~-----~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~ 395 (973)
.. ...+...+..... ...+.||||||+|.+. .+..+.|..+++ ...+++|++|+...
T Consensus 80 ~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 80 RG--------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TC--------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cC--------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC--------HHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 21 1122333333322 1457899999999986 335566777775 35788899888775
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHH
Q 002068 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
.+++++.+||..+.+++|+.++..++++..+.. .++.++++++..++..+.+ .|..++.+++.++
T Consensus 144 -----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~l~~~l~~~~ 208 (226)
T 2chg_A 144 -----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGG------DFRKAINALQGAA 208 (226)
T ss_dssp -----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred -----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 578999999999999999999999998877764 4677999999999887753 4556777777766
Q ss_pred hh
Q 002068 476 AK 477 (973)
Q Consensus 476 ~~ 477 (973)
..
T Consensus 209 ~~ 210 (226)
T 2chg_A 209 AI 210 (226)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 64
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=2.5e-16 Score=175.24 Aligned_cols=194 Identities=15% Similarity=0.237 Sum_probs=145.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
+..++|++.++..+...+........ +..++||+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~----~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~------ 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKE----PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP------ 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCS----CCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCC----CCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh------
Confidence 46799999999999888876543211 11269999999999999999999998 578888888776332
Q ss_pred cCCCCCcccccccchhhHHHHh--CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCC-------CcEEeccCEEEEEe
Q 002068 728 IGAPPGYVGYEEGGQLTEVVRR--RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-------GRTVSFTNTVIIMT 798 (973)
Q Consensus 728 ~G~~~g~~g~~~~~~l~~~~~~--~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~-------g~~v~~~~~iiI~t 798 (973)
+.+.+.+.. +.+++||||||+.+++..++.|+++++++.+..-. .......++++|++
T Consensus 78 -------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 78 -------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp -------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred -------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 123334443 56689999999999999999999999987654211 12234457889999
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
||.. ..|+++|++||+.++.|++++.+++..++...+.. . .
T Consensus 145 t~~~------------------------------~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~-------~--~ 185 (324)
T 1hqc_A 145 TTRP------------------------------GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL-------L--G 185 (324)
T ss_dssp ESCC------------------------------SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT-------T--T
T ss_pred CCCc------------------------------ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh-------c--C
Confidence 9972 34778899999889999999999998888776532 2 3
Q ss_pred eecCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 879 MQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 879 l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
+.+++++++.|+.+. +++ .|.+.+.++.
T Consensus 186 ~~~~~~~~~~l~~~~-~G~--~r~l~~~l~~ 213 (324)
T 1hqc_A 186 VRITEEAALEIGRRS-RGT--MRVAKRLFRR 213 (324)
T ss_dssp CCCCHHHHHHHHHHS-CSC--HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-cCC--HHHHHHHHHH
Confidence 578999999999973 333 5666666655
No 65
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.70 E-value=3.5e-16 Score=172.14 Aligned_cols=206 Identities=22% Similarity=0.383 Sum_probs=147.7
Q ss_pred ccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
|+.|+|++.+++.|...+... ..+...+ .++||+||||||||++|+++|+.+ +.+++.++|+++.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~----~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS----KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL 86 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----SEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC----ceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHH
Confidence 577999999999999888653 1233222 269999999999999999999998 6889999998764
Q ss_pred chhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHH--------------HHHHHHHhhcCCeEecCCC
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD--------------VFNVFLQILDDGRVTDSQG 785 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~--------------v~~~Ll~~le~g~~~~~~g 785 (973)
. .++|.....+ ..++..+....++||||||||.+.+. +++.|+..|+.-.
T Consensus 87 ~-----~~~g~~~~~~-----~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------ 150 (301)
T 3cf0_A 87 T-----MWFGESEANV-----REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------ 150 (301)
T ss_dssp H-----HHHTTCTTHH-----HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC------
T ss_pred h-----hhcCchHHHH-----HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc------
Confidence 3 3344432211 24455556667899999999987543 5788999997421
Q ss_pred cEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHH
Q 002068 786 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 786 ~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
...+++||+|||. ...++|++++ ||+..|.|++++.++..+|++.
T Consensus 151 ---~~~~v~vi~atn~------------------------------~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~ 197 (301)
T 3cf0_A 151 ---TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197 (301)
T ss_dssp ---TTSSEEEEEEESC------------------------------GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred ---CCCCEEEEEecCC------------------------------ccccChHHhcCCccceEEecCCcCHHHHHHHHHH
Confidence 1247899999998 2346777876 9999999999999999999877
Q ss_pred HHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 864 QLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
++.. .+....++ ++.|+... ..|..+.|+.++++++..++.+.+..
T Consensus 198 ~l~~-------~~~~~~~~---~~~la~~~--~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 198 NLRK-------SPVAKDVD---LEFLAKMT--NGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp HHTT-------SCBCSSCC---HHHHHHTC--SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcc-------CCCCccch---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6642 22222233 34455532 23445699999999888887776543
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=1.1e-16 Score=171.99 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=143.7
Q ss_pred HhcCCCCCCCCchHHHHHHHHHh---cc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 249 ASAGKLDPVIGRDDEIRRCIQIL---SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~li~~l---~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
..+..|++++|.+..++.+.+.+ .. ..+.+++|+||||||||++|++++..+ +.+++.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~ 75 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFT 75 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEE
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEE
Confidence 34568899999998766665543 21 235678999999999999999999998 678899
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---ch---hhHHHHHhhhhc----CCCEE
Q 002068 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELR 386 (973)
Q Consensus 317 l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~g~i~ 386 (973)
++++.+.. .+.|..+..+..+|..+.. ..++++||||+|.+....... +. ....+.+...++ ..+++
T Consensus 76 i~~~~~~~--~~~~~~~~~~~~~~~~a~~-~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 76 ISGSDFVE--MFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp ECSCSSTT--SCCCCCHHHHHHHHHHHHT-TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred EeHHHHHH--HhhhhhHHHHHHHHHHHHH-cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 99887753 3667778888889988864 357899999999998654321 11 122333333332 56799
Q ss_pred EEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHH-HHHHHHhcccccCCCC
Q 002068 387 CIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRF 462 (973)
Q Consensus 387 iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~-l~~l~~~s~~~i~~r~ 462 (973)
+|++||.++ .+|+++.+ ||+ .+.++.|+.+++.+|++.++.++ .+++++ +..++..+.+|
T Consensus 153 vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~------~l~~~~~~~~la~~~~G~----- 216 (257)
T 1lv7_A 153 VIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGTPGF----- 216 (257)
T ss_dssp EEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTC-----
T ss_pred EEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC------CCCccccHHHHHHHcCCC-----
Confidence 999999986 68999998 997 68999999999999998776532 233222 44455554433
Q ss_pred CchHHHHHHHHHHhhhh
Q 002068 463 LPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 463 ~p~~a~~lld~a~~~~~ 479 (973)
.+.....++..|...+.
T Consensus 217 ~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 217 SGADLANLVNEAALFAA 233 (257)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44566677777765543
No 67
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.69 E-value=5.3e-16 Score=179.72 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=154.1
Q ss_pred ccccccchHHHHHHHHHHHHHHc---cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
|+.|+|++.+++.|...+..... .......|..++||+||||||||++|+++|+.+. +.+|+.++++++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~--- 207 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK--- 207 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh---
Confidence 57899999999999888753211 0001112334799999999999999999999883 468999999876432
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
++|.....+ ..++..++...++||||||||.+. ..+++.|+..|+.-. ....++
T Consensus 208 --~~g~~~~~~-----~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~v 272 (444)
T 2zan_A 208 --WLGESEKLV-----KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDGI 272 (444)
T ss_dssp ------CCCTH-----HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSSC
T ss_pred --hcchHHHHH-----HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCCE
Confidence 233322211 345666667788999999999883 358888998887521 123578
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIA 873 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~ 873 (973)
+||+|||. ...++|+|++||+.++.+++++.++...|+..++.
T Consensus 273 ~vI~atn~------------------------------~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~------- 315 (444)
T 2zan_A 273 LVLGATNI------------------------------PWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG------- 315 (444)
T ss_dssp EEEEEESC------------------------------GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------
T ss_pred EEEecCCC------------------------------ccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh-------
Confidence 89999998 23478899999999999999999999999988763
Q ss_pred hcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 874 DRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 874 ~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
...+.+++..++.|+.. ...|..+.|..++...+..++-+.+.
T Consensus 316 --~~~~~l~~~~l~~la~~--t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 316 --STQNSLTEADFQELGRK--TDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp --TSCEECCHHHHHHHHHH--TTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred --cCCCCCCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23456789999999985 34567889999999988888876554
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=1.9e-16 Score=175.59 Aligned_cols=198 Identities=22% Similarity=0.264 Sum_probs=152.1
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~ 322 (973)
.+|.++++|..|++++|++..++.+...+.....+++||+||||||||++|+.+++.+.+.. .+..++.++++..
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc
Confidence 46888999999999999999999999988877777899999999999999999999984322 1345777887654
Q ss_pred cccccccchHHHHHHHHHHHHHH-----hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCchH
Q 002068 323 IAGAKYRGEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE 395 (973)
Q Consensus 323 ~~g~~~~g~~e~~l~~~~~~~~~-----~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~~ 395 (973)
... ... ...+..+.. .+.+.|+||||+|.+. .+.++.|..+++. ..+++|++||...
T Consensus 80 ~~~----~~~----~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 80 RGI----DVV----RHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp TCT----TTS----SHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------HHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred cCh----HHH----HHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 321 111 122222221 1347899999999997 4567788888875 5788999998765
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHH
Q 002068 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
.+.+++.+||..+.|.+|+.+++..++...+. ..++.++++++..++..+.+. +..++..++.++
T Consensus 144 -----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~~~~ 208 (319)
T 2chq_A 144 -----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----KEGVKITEDGLEALIYISGGD------FRKAINALQGAA 208 (319)
T ss_dssp -----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH----TTCCCBCHHHHHHHHHTTTTC------HHHHHHHHHHHH
T ss_pred -----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 68899999999999999999999999887776 367889999999999877543 446777776655
Q ss_pred h
Q 002068 476 A 476 (973)
Q Consensus 476 ~ 476 (973)
.
T Consensus 209 ~ 209 (319)
T 2chq_A 209 A 209 (319)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=6.3e-16 Score=171.98 Aligned_cols=204 Identities=19% Similarity=0.305 Sum_probs=155.2
Q ss_pred HHHhhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 237 ALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 237 ~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
.+.....+|.++++|..|++++|++..++.+...+.....+++||+||||||||++|+.+++.+.... ....++.
T Consensus 7 ~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~ 81 (327)
T 1iqp_A 7 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLE 81 (327)
T ss_dssp HHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEE
T ss_pred hhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEE
Confidence 34555679999999999999999999999999988877777899999999999999999999974321 1234777
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHH-----hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEE
Q 002068 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 389 (973)
Q Consensus 317 l~~~~~~~g~~~~g~~e~~l~~~~~~~~~-----~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~ 389 (973)
++++..... ..+...+..... .+++.|+||||+|.+. .+.++.|...++. ..+++|+
T Consensus 82 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~~~~~~~i~ 145 (327)
T 1iqp_A 82 LNASDERGI--------NVIREKVKEFARTKPIGGASFKIIFLDEADALT--------QDAQQALRRTMEMFSSNVRFIL 145 (327)
T ss_dssp EETTCHHHH--------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC--------HHHHHHHHHHHHHTTTTEEEEE
T ss_pred eeccccCch--------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC--------HHHHHHHHHHHHhcCCCCeEEE
Confidence 776543211 112222222221 1457899999999996 3466778888763 5788999
Q ss_pred ccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHH
Q 002068 390 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (973)
Q Consensus 390 at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ 469 (973)
+|+... .+.+++.+||..+.|++|+.++...+++..+. ..++.++++++..++..+.+ .+..++.
T Consensus 146 ~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g------~~r~~~~ 210 (327)
T 1iqp_A 146 SCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE----NEGLELTEEGLQAILYIAEG------DMRRAIN 210 (327)
T ss_dssp EESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH----TTTCEECHHHHHHHHHHHTT------CHHHHHH
T ss_pred EeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHCCC------CHHHHHH
Confidence 888775 58899999999999999999999988887766 35788999999999988753 4557777
Q ss_pred HHHHHHh
Q 002068 470 LVDEAAA 476 (973)
Q Consensus 470 lld~a~~ 476 (973)
+++.+..
T Consensus 211 ~l~~~~~ 217 (327)
T 1iqp_A 211 ILQAAAA 217 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776653
No 70
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.68 E-value=7.4e-17 Score=157.35 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=111.1
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcC
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 729 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G 729 (973)
.++|++.+++.+...+....... .++||+||||||||++|++|++.....+.+|+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~-------~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETD-------IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCC-------SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCCC-------CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 57899999999999888653211 16999999999999999999999877788999 999986442
Q ss_pred CCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhcc
Q 002068 730 APPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (973)
Q Consensus 730 ~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~ 809 (973)
....+.+..+.+++|||||||.++++.|..|+++|+.. ..++.+|+|||.+...+..
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-----------~~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-----------HRPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS-----------SCSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc-----------CCCEEEEEECCcCHHHHHH-
Confidence 13345556667789999999999999999999999541 2356799999986544332
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC
Q 002068 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD 853 (973)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~ 853 (973)
...|+++|++|+.. .|.+|||.
T Consensus 123 ----------------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 ----------------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ----------------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred ----------------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 45689999999865 68888873
No 71
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=3.9e-16 Score=175.80 Aligned_cols=203 Identities=18% Similarity=0.226 Sum_probs=150.9
Q ss_pred hhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 240 KYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 240 ~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
....+|.++|+|..|++++|+++.++.+...+.....+++||+||||||||++|+++++.+.... .....++.+++
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~ 97 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNA 97 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECS
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEcc
Confidence 34468999999999999999999999999998877767899999999999999999999974210 01345777776
Q ss_pred ccccccccccchHHHHHHHHHHHHHH---------------hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--C
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTE---------------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--R 382 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~---------------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~ 382 (973)
++... .+ .+...+..... ...+.||||||+|.+. ...++.|+..++ .
T Consensus 98 ~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~--------~~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 98 SDERG----IS----IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT--------ADAQSALRRTMETYS 161 (353)
T ss_dssp SSCCC----HH----HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTT
T ss_pred ccccc----hH----HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC--------HHHHHHHHHHHHhcC
Confidence 55321 11 12222222211 1345699999999997 345677777776 3
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
...++|.+||... .+++++.+||..+.+.+|+.++...+++..+. ..++.++++++..++.++.+.
T Consensus 162 ~~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~----- 227 (353)
T 1sxj_D 162 GVTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISE----QENVKCDDGVLERILDISAGD----- 227 (353)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHTSSC-----
T ss_pred CCceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCC-----
Confidence 4677888888765 58899999999999999999999999887765 357889999999999998643
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
+..++.+++.+...
T Consensus 228 -~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 228 -LRRGITLLQSASKG 241 (353)
T ss_dssp -HHHHHHHHHHTHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 55777888776654
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=1.2e-15 Score=178.03 Aligned_cols=173 Identities=24% Similarity=0.346 Sum_probs=113.0
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-------CCcceEEeccccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEYME 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~~~ 720 (973)
.+.++|++..++.+...+.+ +...++||+||||||||++|+++|+.+.+ .+.+++.+||+.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--- 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSR---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT--- 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHC---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------
T ss_pred CCCccCcHHHHHHHHHHHhc---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc---
Confidence 35799999999998887763 11237999999999999999999999844 245677888771
Q ss_pred hhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEe
Q 002068 721 KHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (973)
Q Consensus 721 ~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 798 (973)
.|.|..+ ...+++.+....++||||| ...+.++.|+..|+.| ++.+|++
T Consensus 247 ------------~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~a 297 (468)
T 3pxg_A 247 ------------KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGA 297 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEE
T ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEec
Confidence 1222111 1245566666778999999 5677899999999875 3568899
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
||... +.. .-..+|+|.+||. +|.|++|+.+++..|+...+..+.. ...
T Consensus 298 t~~~e----------------~~~---------~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~-----~~~ 346 (468)
T 3pxg_A 298 TTLDE----------------YRK---------YIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA-----HHR 346 (468)
T ss_dssp CCTTT----------------THH---------HHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG-----GSS
T ss_pred CCHHH----------------HHH---------HhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH-----hcC
Confidence 98732 000 0125788999995 6999999999999999876543211 123
Q ss_pred eecCHHHHHHHHhc
Q 002068 879 MQVTDAAIQLLGSL 892 (973)
Q Consensus 879 l~~~~~a~~~L~~~ 892 (973)
+.++++++++++..
T Consensus 347 ~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 347 VSITDDAIEAAVKL 360 (468)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56788888777764
No 73
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.67 E-value=9.4e-16 Score=169.27 Aligned_cols=211 Identities=23% Similarity=0.326 Sum_probs=143.7
Q ss_pred CCCCchHHHHHHHHHhcc--------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 256 PVIGRDDEIRRCIQILSR--------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~--------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
.++|++..++.+...+.. ..+.++||+||||||||++|+++++.+ +.+++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 489999999888877654 356789999999999999999999998 77899999988
Q ss_pred ccccccccch-HHHHHHHHHHHH----HHhCCCeEEEEccccccccCCCCCch----hhHHHHHhhhhcCC---------
Q 002068 322 LIAGAKYRGE-FEDRLKAVLKEV----TESEGQIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLGRG--------- 383 (973)
Q Consensus 322 ~~~g~~~~g~-~e~~l~~~~~~~----~~~~~~~ILfiDEi~~l~~~~~~~~~----~~~~~~L~~~l~~g--------- 383 (973)
+... .+.|. ....+..++..+ .....++||||||+|.+.......+. ..+++.|.++++.+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 7541 24442 233455554421 11122569999999999865432211 12367777877754
Q ss_pred ---CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHH----HHHHHHhh---hc--CCccCHHHHHHH
Q 002068 384 ---ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILR----GLRERYEL---HH--GVRISDSALVEA 450 (973)
Q Consensus 384 ---~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~----~~~~~~~~---~~--~v~i~~~~l~~l 450 (973)
.+++|++++.... ....++++|.+||. .|.|++|+.+++.+|++ .+...+.. .. .+.+++++++.+
T Consensus 165 ~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 165 KTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp ECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred cCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 6788988632100 01268899999997 58999999999999998 34433321 12 357899999999
Q ss_pred HHhcccc--cCCCCCchHHHHHHHHHHhhh
Q 002068 451 AILSDRY--ISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 451 ~~~s~~~--i~~r~~p~~a~~lld~a~~~~ 478 (973)
+..+... .....-+..+.++++.++...
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 9887431 011223446777777766543
No 74
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=6.9e-16 Score=171.31 Aligned_cols=197 Identities=17% Similarity=0.218 Sum_probs=153.7
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~ 322 (973)
.+|.++++|..|++++|++..++.+...+.....++++|+||||+|||++|+.+++.+.+.. .+..++.++.+..
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc
Confidence 47899999999999999999999999998877777799999999999999999999974321 1345777765542
Q ss_pred cccccccchHHHHHHHHHHHHHH------hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCch
Q 002068 323 IAGAKYRGEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 394 (973)
Q Consensus 323 ~~g~~~~g~~e~~l~~~~~~~~~------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~ 394 (973)
. + ...++.++..+.. .+.+.|++|||+|.+. ....+.|...++. +.+++|++|+..
T Consensus 84 ~------~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 84 R------G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT--------AGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp C------S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC--------HHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred c------C--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC--------HHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 1 1 2345555555541 2237899999999987 3456777777764 568888888876
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a 474 (973)
. .+.+++.+||..+.|++|+.++..++++..+.. .++.++++++..++..+.+ .|..++.+++.+
T Consensus 148 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G------~~r~a~~~l~~~ 212 (323)
T 1sxj_B 148 N-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEG------DMRQAINNLQST 212 (323)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred h-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHH
Confidence 4 688999999999999999999999999887764 5778999999999998853 356778887766
Q ss_pred H
Q 002068 475 A 475 (973)
Q Consensus 475 ~ 475 (973)
+
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 5
No 75
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.66 E-value=6.9e-16 Score=174.94 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=144.7
Q ss_pred hcHHHHHhcCC-CCCCCCchHHHHH---HHHHhccCCC--CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEE
Q 002068 243 KDLTAMASAGK-LDPVIGRDDEIRR---CIQILSRRTK--NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (973)
Q Consensus 243 ~~l~~~~~~~~-l~~iiG~~~~i~~---li~~l~~~~~--~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (973)
.++.+.++|.. |++++|++..++. +...+..... .++||+||||||||++|+++++.+.. ..+++.
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~ 102 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTA 102 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEE
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCccc
Confidence 35567778887 9999999987665 4444444433 47999999999999999999999821 235666
Q ss_pred EEccccccc-----------------------------------------------ccccchHHHHHHHHHHHHHH----
Q 002068 317 LDMGALIAG-----------------------------------------------AKYRGEFEDRLKAVLKEVTE---- 345 (973)
Q Consensus 317 l~~~~~~~g-----------------------------------------------~~~~g~~e~~l~~~~~~~~~---- 345 (973)
+++..+... ..+.|++...++..+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 664432110 01223334445555544432
Q ss_pred hCC----CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEcc---------CchHHHhhhccCHHHHccC
Q 002068 346 SEG----QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGAT---------TLDEYRKYIEKDPALERRF 410 (973)
Q Consensus 346 ~~~----~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at---------~~~~~~~~~~~d~al~~Rf 410 (973)
.+. ++||||||+|.+. .+.++.|+..++.. .+.++++. +.... ..+++++++||
T Consensus 183 ~g~~~~~~~vl~IDEi~~l~--------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~---~~l~~~l~sR~ 251 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHMLD--------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSP---HGIPIDLLDRL 251 (368)
T ss_dssp HTC---CBCEEEEESGGGSB--------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEE---TTCCHHHHTTE
T ss_pred hccccccCceEEEhhccccC--------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCc---ccCCHHHHhhc
Confidence 121 4699999999997 45777888887644 33333332 22211 36889999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhh
Q 002068 411 QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKM 480 (973)
Q Consensus 411 ~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~ 480 (973)
..+.|++|+.+++.+|++..+.. .++.++++++..++.++.+ ..+..++++++.|+..+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887764 5778999999999999863 3456888999988776543
No 76
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=5.7e-16 Score=172.30 Aligned_cols=188 Identities=24% Similarity=0.221 Sum_probs=142.2
Q ss_pred HHHhcCCCCCCCCchHHHHHHHHHhcc-----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 247 AMASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 247 ~~~~~~~l~~iiG~~~~i~~li~~l~~-----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
++++|..|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +.+++.++++.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~ 73 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPA 73 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTT
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccc
Confidence 457889999999999988887776642 355789999999999999999999998 67888888765
Q ss_pred ccccccccchHHHHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------------
Q 002068 322 LIAGAKYRGEFEDRLKAVLKEVTE-SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------------- 383 (973)
Q Consensus 322 ~~~g~~~~g~~e~~l~~~~~~~~~-~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g----------------- 383 (973)
+.. . ..++..+.. ...+++|||||+|.+. ...++.|..+++.+
T Consensus 74 ~~~--------~---~~l~~~l~~~~~~~~~l~lDEi~~l~--------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 74 IEK--------P---GDLAAILANSLEEGDILFIDEIHRLS--------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp CCS--------H---HHHHHHHTTTCCTTCEEEETTTTSCC--------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cCC--------h---HHHHHHHHHhccCCCEEEEECCcccc--------cchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 531 1 122222222 2457799999999987 34556666666532
Q ss_pred ---CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 384 ---ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 384 ---~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
++++|++||... .+++++.+||. .+.++.|+.+++..+++..+.. .++.++++++..++.++.+
T Consensus 135 ~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G--- 202 (324)
T 1hqc_A 135 ELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRG--- 202 (324)
T ss_dssp ECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCS---
T ss_pred CCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccC---
Confidence 478999999885 57899999995 8999999999998888877663 4678999999999988753
Q ss_pred CCCCchHHHHHHHHHHhhh
Q 002068 460 GRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 460 ~r~~p~~a~~lld~a~~~~ 478 (973)
.|..+..+++.+...+
T Consensus 203 ---~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 203 ---TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp ---CHHHHHHHHHHHTTTS
T ss_pred ---CHHHHHHHHHHHHHHH
Confidence 3556777777765544
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.66 E-value=8.9e-15 Score=183.28 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=128.6
Q ss_pred CCCCchHHHHHHHHHhccC---------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 256 PVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~---------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
.++|++..++.+...+.+. +..++||+||||||||++|++|++.+... +.+++.+|++.+....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSSG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccchh
Confidence 3689999888887766432 11368999999999999999999998543 5679999988764321
Q ss_pred ----------cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 327 ----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 327 ----------~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
.|.|..+ ...+...+. ...++||||||++.+. .++++.|+++++.|
T Consensus 632 ~~s~l~g~~~~~~G~~~--~g~l~~~~~-~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEE--GGQLTEAVR-RRPYSVILFDEIEKAH--------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGGC----------------CHHHHHH-HCSSEEEEESSGGGSC--------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHHcCCCCCCcCccc--cchHHHHHH-hCCCeEEEEecccccC--------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 1222211 011222233 3457899999999886 67899999999866
Q ss_pred CEEEEEccCchH---------------HHhh------hccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhc---
Q 002068 384 ELRCIGATTLDE---------------YRKY------IEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHH--- 438 (973)
Q Consensus 384 ~i~iI~at~~~~---------------~~~~------~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~--- 438 (973)
++++|+|||... .... -.+.|+|.+||+ .+.+.+|+.+++..|++.++.++....
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 566999999621 1111 135799999996 667778899999999988877654322
Q ss_pred --CCccCHHHHHHHHHhcc
Q 002068 439 --GVRISDSALVEAAILSD 455 (973)
Q Consensus 439 --~v~i~~~~l~~l~~~s~ 455 (973)
.+.++++++..++..+.
T Consensus 781 ~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TCEEEECHHHHHHHHHHHC
T ss_pred CceEEECHHHHHHHHHcCC
Confidence 35799999999988754
No 78
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=174.12 Aligned_cols=202 Identities=17% Similarity=0.241 Sum_probs=141.9
Q ss_pred ccccccchHHHHHHHHHHHHHHccCC---CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLS---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~---~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
+..++|++.+++.|...+........ ....+..++||+||||||||++|++||+.+ +.+|+.++|+++....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~-- 188 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY-- 188 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC------
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc--
Confidence 57899999999999988865432100 011223379999999999999999999998 7899999998875431
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
+|..... ...++..+....++||||||||.+ ...+++.|+..++...-. ...++
T Consensus 189 ---~g~~~~~-----~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v 253 (389)
T 3vfd_A 189 ---VGEGEKL-----VRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDDRV 253 (389)
T ss_dssp ------CHHH-----HHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------CE
T ss_pred ---cchHHHH-----HHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCCCE
Confidence 2221111 124455666777799999999988 356788888888742110 12468
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIA 873 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~ 873 (973)
+||+|||. ...+++.+++||+..|.|++++.++...|+...+..
T Consensus 254 ~vI~atn~------------------------------~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~------ 297 (389)
T 3vfd_A 254 LVMGATNR------------------------------PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK------ 297 (389)
T ss_dssp EEEEEESC------------------------------GGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT------
T ss_pred EEEEecCC------------------------------chhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh------
Confidence 89999997 234678899999989999999999999999877632
Q ss_pred hcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 874 DRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 874 ~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
....+++++++.|+... ..+..+.+..++...
T Consensus 298 ---~~~~l~~~~~~~la~~~--~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 298 ---QGSPLTQKELAQLARMT--DGYSGSDLTALAKDA 329 (389)
T ss_dssp ---SCCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHH
T ss_pred ---cCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 24568899999998853 234455665555543
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.65 E-value=2.2e-16 Score=172.88 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=105.8
Q ss_pred chHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCC
Q 002068 654 QDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG 733 (973)
Q Consensus 654 q~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g 733 (973)
-+..++.+...+.+........+.|. .+||+||||||||++|+++|+.+ +.+++.++|+++... ++|.+++
T Consensus 12 ~~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~-----~~g~~~~ 82 (293)
T 3t15_A 12 APAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG-----NAGEPAK 82 (293)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC--------HHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc-----cCchhHH
Confidence 34445555555554444444455565 69999999999999999999999 789999999987443 1222211
Q ss_pred cccccccchhhHHH----HhCCCeEEEEccccccCH-------------HHHHHHHHhhcCCeEecCC--CcEEeccCEE
Q 002068 734 YVGYEEGGQLTEVV----RRRPYAVILFDEIEKAHS-------------DVFNVFLQILDDGRVTDSQ--GRTVSFTNTV 794 (973)
Q Consensus 734 ~~g~~~~~~l~~~~----~~~~~~Vl~lDEid~l~~-------------~v~~~Ll~~le~g~~~~~~--g~~v~~~~~i 794 (973)
++ ..++... +...++||||||||++.+ .+++.|+++||........ +......+++
T Consensus 83 ~i-----~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~ 157 (293)
T 3t15_A 83 LI-----RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 157 (293)
T ss_dssp HH-----HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCC
T ss_pred HH-----HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcE
Confidence 11 1122222 355789999999998875 4679999999966543222 2334567899
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHHH
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
||+|||. ...++|+|+ +|||.+|.+ ++.++..+|++.++
T Consensus 158 vI~ttN~------------------------------~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~ 198 (293)
T 3t15_A 158 IIVTGND------------------------------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIF 198 (293)
T ss_dssp EEEECSS------------------------------CCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEecCC------------------------------cccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhc
Confidence 9999997 223566777 699877764 39999999988665
No 80
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=3.9e-15 Score=168.93 Aligned_cols=204 Identities=21% Similarity=0.171 Sum_probs=151.4
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc-------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~------------- 308 (973)
.+|.++|+|..|++++|++..++.+...+......+ +||+||||||||++|+.+++.+........
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999887666555 689999999999999999999854221100
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 309 -l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
.....++.++..... ... .++.+++.+.. .+++.||||||+|.+. ....+.|...++.
T Consensus 84 ~~~~~~~~~~~~~~~~----~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~Ll~~le~~~ 147 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRT----KVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (373)
T ss_dssp TSCCSSCEEEETTCSC----CSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------HHHHHHHHHHHHSCC
T ss_pred ccCCCceEEecccccC----CHH----HHHHHHHHHhhccccCCeEEEEEECcchhc--------HHHHHHHHHHHhcCC
Confidence 001134555433211 111 24455555432 2346899999999986 3466777777764
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
..+++|++|+... .+.+.+.+||..+.+++|+.++...+++..+.. .++.++++++..++..+.+
T Consensus 148 ~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G------ 212 (373)
T 1jr3_A 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------ 212 (373)
T ss_dssp SSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSS------
T ss_pred CceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCC------
Confidence 5788999888765 578999999999999999999999999887764 5788999999999988854
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
.|..+..+++.+...
T Consensus 213 ~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 213 SLRDALSLTDQAIAS 227 (373)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 356788888877643
No 81
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.65 E-value=7.2e-16 Score=173.40 Aligned_cols=220 Identities=16% Similarity=0.230 Sum_probs=136.3
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC----CcceEEeccccccchhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EEALVRIDMSEYMEKHA 723 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~----~~~~~~i~~~~~~~~~~ 723 (973)
++.++|++.++..+...... + ..+++||+||||||||++|+++++.+... ..+ ++|........
T Consensus 23 f~~i~G~~~~~~~l~~~~~~-------~--~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVD-------P--GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHC-------G--GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhC-------C--CCceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccc
Confidence 46799999877654333221 0 11269999999999999999999988420 112 23433221110
Q ss_pred ------------------------hhhhcCCCCC---cccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhc
Q 002068 724 ------------------------VSRLIGAPPG---YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILD 776 (973)
Q Consensus 724 ------------------------~~~l~G~~~g---~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le 776 (973)
...++|...- +.+ .......+.+..+.++|||||||+.++++.++.|+++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le 169 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISK-GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ 169 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHH-CGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcC-CceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence 1122221000 000 000000122334457899999999999999999999999
Q ss_pred CCeEecCC-CcEEe-ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC-
Q 002068 777 DGRVTDSQ-GRTVS-FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD- 853 (973)
Q Consensus 777 ~g~~~~~~-g~~v~-~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~- 853 (973)
.|...... |.... ..++++|+|+|... ..++++|++||+..+.+++++
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~li~~~n~~~-----------------------------~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 170 SGENVVERDGLSIRHPARFVLVGSGNPEE-----------------------------GDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp HSEEEECCTTCCEEEECCEEEEEEECSCS-----------------------------CCCCHHHHTTCSEEEECCCCCS
T ss_pred cCceEEEecceEEeeCCceEEEEEeCCCC-----------------------------CCCCHHHHhhcceEEEcCCCCc
Confidence 88643322 33333 34889999999721 237889999998889999995
Q ss_pred HHHHHHHHHHHHHH-----------------HHHHH---HhcCCceecCHHHHHHHHhcCCCCCC-CccHHHHHHHH
Q 002068 854 RDQISSIVRLQLDR-----------------VQKRI---ADRKMKMQVTDAAIQLLGSLGYDPNY-GARPVKRVIQQ 909 (973)
Q Consensus 854 ~~~l~~I~~~~l~~-----------------~~~~~---~~~~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~r~i~~ 909 (973)
.++..+|+...+.. +.+++ ......+.++++++++|+++.|..+. +.|.+.+.++.
T Consensus 221 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~ 297 (350)
T 1g8p_A 221 VETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRS 297 (350)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 55665777663221 01111 11122468999999999998887666 57777766665
No 82
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.65 E-value=3.2e-15 Score=158.06 Aligned_cols=204 Identities=21% Similarity=0.181 Sum_probs=148.8
Q ss_pred hcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCC-CceEECCCCCcHHHHHHHHHHHHhcCCCCccc------------
Q 002068 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------------ 309 (973)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~-~~LL~GppG~GKT~la~~la~~l~~~~~p~~l------------ 309 (973)
.+|.++++|..+++++|++..++.+...+.....+ .++|+||||+|||++++.+++.+.........
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 46788999999999999999999999988765543 47899999999999999999988542211000
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--
Q 002068 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (973)
Q Consensus 310 --~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (973)
....++.++... ......+..++..+.. ...+.+|||||+|.+. .+..+.|...++.
T Consensus 91 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~~~~~~l~~~l~~~~ 154 (250)
T 1njg_A 91 QGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 154 (250)
T ss_dssp TTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------HHHHHHHHHHHHSCC
T ss_pred ccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------HHHHHHHHHHHhcCC
Confidence 011234443221 1112234445444321 2346899999999985 3456667777764
Q ss_pred CCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCC
Q 002068 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (973)
Q Consensus 383 g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~ 462 (973)
..+.+|++|+... .+++++.+|+..+.+++|+.++..++++..+.. .++.++++++..+++.+.+
T Consensus 155 ~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G------ 219 (250)
T 1njg_A 155 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------ 219 (250)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTT------
T ss_pred CceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC------
Confidence 5788999988765 578999999989999999999999999877764 5678899999999988853
Q ss_pred CchHHHHHHHHHHhh
Q 002068 463 LPDKAIDLVDEAAAK 477 (973)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (973)
.|..+..+++.++..
T Consensus 220 ~~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 220 SLRDALSLTDQAIAS 234 (250)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 566788888877644
No 83
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=6.1e-16 Score=178.49 Aligned_cols=192 Identities=18% Similarity=0.327 Sum_probs=133.1
Q ss_pred ccccccchHHH---HHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAV---KSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i---~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
+..++||++++ ..+...+...+ . .++||+||||||||++|++|++.+ +.+++.+++...... .+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--------~-~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~-~i 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--------L-HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVK-EI 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--------C-CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHH-HH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--------C-cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHH-HH
Confidence 46799999999 77777776422 1 279999999999999999999998 677888876543211 11
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChh
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~ 804 (973)
..++ ...........++||||||||.++...|+.|+..+++|. ++||++|+...
T Consensus 92 r~~~------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-------------v~lI~att~n~- 145 (447)
T 3pvs_A 92 REAI------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-------------ITFIGATTENP- 145 (447)
T ss_dssp HHHH------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------CEEEEEESSCG-
T ss_pred HHHH------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------eEEEecCCCCc-
Confidence 1110 001111123567899999999999999999999999854 45666664421
Q ss_pred hhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHH
Q 002068 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDA 884 (973)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~ 884 (973)
...+.++|++|+ .++.|.+++.+++..++...+......+. +..+.++++
T Consensus 146 ---------------------------~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~--~~~~~i~~~ 195 (447)
T 3pvs_A 146 ---------------------------SFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYG--GQDIVLPDE 195 (447)
T ss_dssp ---------------------------GGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSST--TSSEECCHH
T ss_pred ---------------------------ccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhc--cccCcCCHH
Confidence 234778999999 58889999999999999988754222111 135789999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 885 AIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 885 a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
++++|+.+ |+++ +|.+.+.++..+
T Consensus 196 al~~L~~~-~~Gd--~R~lln~Le~a~ 219 (447)
T 3pvs_A 196 TRRAIAEL-VNGD--ARRALNTLEMMA 219 (447)
T ss_dssp HHHHHHHH-HCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCC--HHHHHHHHHHHH
Confidence 99999997 5544 788888887754
No 84
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=170.20 Aligned_cols=205 Identities=19% Similarity=0.245 Sum_probs=146.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCC---CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLS---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~---~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
++.++|++.+++.|...+........ ...++..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc---
Confidence 57899999999999998865321100 001222379999999999999999999998 688999999877442
Q ss_pred hhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 725 SRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
+.|... ...++..+....++||||||||.+. ..+++.|+..++..... ...
T Consensus 157 ---------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~ 220 (357)
T 3d8b_A 157 ---------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SED 220 (357)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCC
Confidence 222111 1234555566778999999999884 35778888888753211 124
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+++||+|||. ...+.+++++||+..+.+++++.++..+|+...+..
T Consensus 221 ~v~vI~atn~------------------------------~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~---- 266 (357)
T 3d8b_A 221 RILVVGATNR------------------------------PQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSK---- 266 (357)
T ss_dssp CEEEEEEESC------------------------------GGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----
T ss_pred CEEEEEecCC------------------------------hhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----
Confidence 6889999997 234678899999999999999999999999877632
Q ss_pred HHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 872 IADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
. .+.++++.++.|+... ..|..+.++.++.......+
T Consensus 267 ---~--~~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 267 ---E--QCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp ---S--CBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHH
T ss_pred ---c--CCCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 2 3568899999999853 34556777777776554443
No 85
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=2.8e-15 Score=167.38 Aligned_cols=203 Identities=21% Similarity=0.271 Sum_probs=142.1
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 639 ~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+..+...+...++||++++..+...+.. + +++||+||||||||++|+++++.+ +.+++.++|...
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~---~--------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICT---G--------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHH---T--------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHc---C--------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 45567777889999999999888777653 1 269999999999999999999998 567888888533
Q ss_pred cchhhhhhhcCCC-----CCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc-C
Q 002068 719 MEKHAVSRLIGAP-----PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT-N 792 (973)
Q Consensus 719 ~~~~~~~~l~G~~-----~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~-~ 792 (973)
... ..++|.. .+...... +.+ ..+|||||||+.+++.+++.|++.|+++.++.. |.....+ +
T Consensus 83 ~~~---~~l~g~~~~~~~~~~~~~~~-g~l-------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~ 150 (331)
T 2r44_A 83 LLP---SDLIGTMIYNQHKGNFEVKK-GPV-------FSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNP 150 (331)
T ss_dssp CCH---HHHHEEEEEETTTTEEEEEE-CTT-------CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSS
T ss_pred CCh---hhcCCceeecCCCCceEecc-Ccc-------cccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCC
Confidence 211 2223221 01000000 111 136999999999999999999999999988763 5555544 6
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHH----
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRV---- 868 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~---- 868 (973)
+++|+|+|+.. ..+ ...++++|++||+..+.+++++.++..+|+...+...
T Consensus 151 ~~viat~np~~-----~~~--------------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~ 205 (331)
T 2r44_A 151 FLVLATQNPVE-----QEG--------------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQ 205 (331)
T ss_dssp CEEEEEECTTC-----CSC--------------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCC
T ss_pred EEEEEecCCCc-----ccC--------------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchh
Confidence 78889999621 000 1137889999998889999999999999998765320
Q ss_pred ---------HHHHHhcCCceecCHHHHHHHHhc
Q 002068 869 ---------QKRIADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 869 ---------~~~~~~~~~~l~~~~~a~~~L~~~ 892 (973)
...+......+.+++++++++++.
T Consensus 206 ~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 206 VQKIVSKNDVLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp CCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 000011111467899999999864
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.64 E-value=2.4e-15 Score=174.94 Aligned_cols=234 Identities=17% Similarity=0.228 Sum_probs=154.8
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 637 REKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 637 ~~~l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.+.+..+...+...++|++++++.+..++... +++||+||||||||++|++||+.+. ...+|..++|.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l~-~~~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQ-NARAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGBS-SCCEEEEECCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHHh-hhhHHHHHHHh
Confidence 34567778888899999999998887766531 2799999999999999999999883 34567777765
Q ss_pred cccchhhhhhhcCCCCCcccccccchhhHHHHh--CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEE
Q 002068 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR--RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (973)
Q Consensus 717 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~--~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~i 794 (973)
-. ..+.++|...++.... .+.+...... ..++|||||||+++++.+++.|+++|+++.++. .|.....+..+
T Consensus 78 ~~----t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~ 151 (500)
T 3nbx_X 78 FS----TPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRL 151 (500)
T ss_dssp TC----CHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCE
T ss_pred cC----CHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhh
Confidence 31 2345666432221100 0111100001 024699999999999999999999999999886 45566666556
Q ss_pred EEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCH-HHHHHHHHHHH--------
Q 002068 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQISSIVRLQL-------- 865 (973)
Q Consensus 795 iI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~-~~l~~I~~~~l-------- 865 (973)
+|++||.-++ ...|.+++++||...+.+++++. ++...|+....
T Consensus 152 iI~ATN~lpe---------------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~ 204 (500)
T 3nbx_X 152 LVAASNELPE---------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVP 204 (500)
T ss_dssp EEEEESSCCC---------------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSC
T ss_pred hhhccccCCC---------------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCC
Confidence 7888885211 12256789999988899999986 66777776432
Q ss_pred ----------HHHHHHHHhcCCceecCHHHHHHHHhcC-------CCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 002068 866 ----------DRVQKRIADRKMKMQVTDAAIQLLGSLG-------YDPNYGARPVKRVIQQYVENELAKGILRGE 923 (973)
Q Consensus 866 ----------~~~~~~~~~~~~~l~~~~~a~~~L~~~~-------~~~~~gaR~L~r~i~~~i~~~la~~~l~~~ 923 (973)
..+...+ ..+.+++++++++++.. .....+.|.+. ..+...-+.+.+.|+
T Consensus 205 ~~~~~~~e~l~~~~~~~----~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~----~llr~A~A~A~l~gr 271 (500)
T 3nbx_X 205 DALQVTDEEYERWQKEI----GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWK----KAIRLLQASAFFSGR 271 (500)
T ss_dssp TTTSBCHHHHHHHHHHH----TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHH----HHHHHHHHHHHHTTC
T ss_pred ccceecHHHHHHHHhcC----CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHH----HHHHHHHHHHhhcCC
Confidence 1111111 14678999999988753 12233455444 445555667777764
No 87
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=5e-15 Score=164.81 Aligned_cols=189 Identities=16% Similarity=0.196 Sum_probs=144.0
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (973)
++.++|+++++..+...+... ++...+|++||||||||++|+++++.+ +.+++.++++..... .+..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~--------~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~-~i~~- 91 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG--------KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKID-FVRG- 91 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT--------CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHH-HHHT-
T ss_pred HHHHhCcHHHHHHHHHHHHcC--------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHH-HHHH-
Confidence 467999999999988887621 111258899999999999999999998 678999998765311 1111
Q ss_pred cCCCCCcccccccchhhHHHHh----CCCeEEEEccccccC-HHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCC
Q 002068 728 IGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAH-SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (973)
Q Consensus 728 ~G~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~-~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~ 802 (973)
.+.+.... ..++||||||+|.+. .+.++.|++.++.. ..++.||+|+|.
T Consensus 92 --------------~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-----------~~~~~iI~~~n~- 145 (324)
T 3u61_B 92 --------------PLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-----------SSNCSIIITANN- 145 (324)
T ss_dssp --------------HHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-----------GGGCEEEEEESS-
T ss_pred --------------HHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEeCC-
Confidence 11122221 246799999999999 99999999999852 246789999997
Q ss_pred hhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 002068 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVT 882 (973)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~ 882 (973)
...+.+++.+|| .++.|++++.+++.+|+...+..+...+...+ +.++
T Consensus 146 -----------------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~ 193 (324)
T 3u61_B 146 -----------------------------IDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIA 193 (324)
T ss_dssp -----------------------------GGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBS
T ss_pred -----------------------------ccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 234778999999 68999999999999999988888877777665 5678
Q ss_pred H-HHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 883 D-AAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 883 ~-~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
+ +++++|++. +.++ .|.+.+.++.+
T Consensus 194 ~~~~~~~l~~~-~~gd--~R~a~~~L~~~ 219 (324)
T 3u61_B 194 DMKVVAALVKK-NFPD--FRKTIGELDSY 219 (324)
T ss_dssp CHHHHHHHHHH-TCSC--TTHHHHHHHHH
T ss_pred cHHHHHHHHHh-CCCC--HHHHHHHHHHH
Confidence 8 999999986 4433 67766666653
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.63 E-value=2.7e-15 Score=202.11 Aligned_cols=453 Identities=17% Similarity=0.219 Sum_probs=245.1
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---H------
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---E------ 345 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~---~------ 345 (973)
...++||+||||||||+++..+...+ .+..++.+++++..... .+...++.-. .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta~--------~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTPE--------LLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCHH--------HHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCHH--------HHHHHHhhcceEEeccCCCc
Confidence 44689999999999998876544332 25577888887765321 2222332110 0
Q ss_pred ------hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--------------CEEEEEccCchHHHhhhccCHH
Q 002068 346 ------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPA 405 (973)
Q Consensus 346 ------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~i~iI~at~~~~~~~~~~~d~a 405 (973)
.+..+|+||||++.- ..+..|......+|+++++.| ++.+|+|+|++.......+++.
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNmp--~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~R 1443 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINLP--STDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHR 1443 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTCC--CCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHH
T ss_pred ccCCCcCCceEEEEecccCCC--CccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHH
Confidence 022469999999863 334456677888999998733 5779999998743344578999
Q ss_pred HHccCceEEecCCCHHHHHHHHHHHHHHHhhhc-CC-ccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh----hh
Q 002068 406 LERRFQQVYVDQPNVEDTISILRGLRERYELHH-GV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK----LK 479 (973)
Q Consensus 406 l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~-~v-~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~----~~ 479 (973)
|.|||..+.++.|+.++...|+..+...+.... .+ .+.+....+.+.+ ....... .+
T Consensus 1444 f~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~l-----------------y~~v~~~~lp~~k 1506 (3245)
T 3vkg_A 1444 FLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEF-----------------YSESQKRFTPDIQ 1506 (3245)
T ss_dssp HHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHH-----------------HHHHHHHSCTTTS
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCCcC
Confidence 999999999999999999999887766432210 11 1112222222222 1111111 13
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002068 480 MEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDR- 558 (973)
Q Consensus 480 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~e~~~~~~~~l~~~~~e~~~l~~~l~~L~~~~~~e~~~l~~~~~~~~~~~~- 558 (973)
.++.+.+.++..+-+.+........ ....+.+.+.|.+||.++...+.+..+=..
T Consensus 1507 ~HY~FnLRDLsrv~qGll~~~~~~~------------------------~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~ 1562 (3245)
T 3vkg_A 1507 AHYIYSPRELSRWDRALLEAIQTMD------------------------GCTLEGLVRLWAHEALRLFQDRLVETEEKEW 1562 (3245)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTSS------------------------CCCTTHHHHHHHHHHHHHHTTTCSSHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhcCccc------------------------cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555555333322110000 001245788999999999865533321100
Q ss_pred HhHHHHHHHHhhhHHHHHHhhhccHHHHHHHHHHHHHHHHHhhhcCCcccc--------cccchhhHHHHHHhhhCCCCc
Q 002068 559 VNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLR--------EEVTGSDIAEIVSKWTGIPVS 630 (973)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~--------~~v~~~~i~~~~~~~~~~p~~ 630 (973)
....+...-.++ ++... ... ...+++. ..++.+++.+++...
T Consensus 1563 f~~~l~~~~~~~---------F~~~~--------------~~~-~~~pllf~~f~~~~Y~~v~~~~l~~~l~~~------ 1612 (3245)
T 3vkg_A 1563 TDKKIDEVALKH---------FPSVN--------------LDA-LKRPILYSNWLTKDYQPVNRSDLREYVKAR------ 1612 (3245)
T ss_dssp HHHHHHHHHHHH---------CTTSC--------------GGG-GCSSCCCCSSCC----CCCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHh---------cCcch--------------hhh-cccCcchhhhccccCccCCHHHHHHHHHHH------
Confidence 111111100000 00000 000 0001111 112222222222111
Q ss_pred cccHHHHHHHHHH-HHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcc
Q 002068 631 KLQQSEREKLLHL-EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA 709 (973)
Q Consensus 631 ~~~~~~~~~l~~l-~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~ 709 (973)
+... +....-.++=.+++++.|.+.-+..+ .|.||.||+|..|+||++++|..|... +..
T Consensus 1613 ---------L~~yn~~~~~m~LVlF~daleHv~RI~RIL~-------qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~ 1673 (3245)
T 3vkg_A 1613 ---------LKVFYEEELDVPLVLFNEVLDHILRIDRVFR-------QPQGHALLIGVSGGGKSVLSRFVAWMN---GLS 1673 (3245)
T ss_dssp ---------HHTTC------CCCCCHHHHHHHHHHHHHHT-------STTCCEEEEESTTSSHHHHHHHHHHHT---TCE
T ss_pred ---------HHHHHhcccCceEEeHHHHHHHHHHHHHHHc-------cCCCCeEEecCCCCcHHHHHHHHHHHh---CCe
Confidence 0000 00112246667889998888776643 566899999999999999999999776 566
Q ss_pred eEEeccccccchhhhhhhcCCCCCcccccccchhhHHHH----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCC
Q 002068 710 LVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG 785 (973)
Q Consensus 710 ~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g 785 (973)
++.+..+.- |....-...+...++ +..+.|++|+|-+-..+.++..+..+|..|.+.+-..
T Consensus 1674 vfqi~i~k~---------------Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~ 1738 (3245)
T 3vkg_A 1674 IYTIKVNNN---------------YKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFE 1738 (3245)
T ss_dssp EECCC-------------------CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSC
T ss_pred eEEEeeeCC---------------CCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCC
Confidence 666655432 110000012222222 4566899999999999999999999999998764210
Q ss_pred cEEeccCEEEEEecCCChhhhhc-------cCCC-CCCccchHHHHHHHHHHHH---------------HhccChhhhcc
Q 002068 786 RTVSFTNTVIIMTSNVGSQYILN-------MDDE-TFPKETAYETIKQRVMDAA---------------RSIFRPEFMNR 842 (973)
Q Consensus 786 ~~v~~~~~iiI~tsN~~~~~l~~-------~~~~-~~~~~~~~~~~~~~~~~~l---------------~~~f~p~ll~R 842 (973)
. ...+.+.. ..+. .+..+..+..+.+++++.+ +-+--|+|+++
T Consensus 1739 ~--------------dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvnc 1804 (3245)
T 3vkg_A 1739 G--------------EEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNR 1804 (3245)
T ss_dssp T--------------TTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHH
T ss_pred H--------------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhC
Confidence 0 00000100 0000 0111112222222222111 11123789999
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHH
Q 002068 843 VDEYIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 843 ~d~~i~f~~l~~~~l~~I~~~~l~ 866 (973)
| .+--|.+...+.+..+...++.
T Consensus 1805 c-tIDWf~~Wp~eAL~~Va~~fl~ 1827 (3245)
T 3vkg_A 1805 C-VLDWFGEWSPEALFQVGSEFTR 1827 (3245)
T ss_dssp S-EEEEEESCCHHHHHHHHHHHTT
T ss_pred c-eeeecCCCCHHHHHHHHHHHHh
Confidence 8 6889999999999999888774
No 89
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=3.6e-17 Score=176.96 Aligned_cols=200 Identities=25% Similarity=0.396 Sum_probs=133.2
Q ss_pred cCCCCCCCCchHHHHHHHHHhc------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+..|++++|++..++.+.+.+. ...+.++||+||||||||++|+++++.+ +.+++.++
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 76 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSMG 76 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEec
Confidence 4578899999876666665543 2345679999999999999999999998 66777777
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc-------hhhHHHHHhhhhc-----CCCEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG-------AMDAGNLLKPMLG-----RGELR 386 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~-------~~~~~~~L~~~l~-----~g~i~ 386 (973)
++.+.. .+.|.....++.+|..+... .++||||||+|.+.......+ .....+.|...++ .+.++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 153 (268)
T 2r62_A 77 GSSFIE--MFVGLGASRVRDLFETAKKQ-APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153 (268)
T ss_dssp SCTTTT--SCSSSCSSSSSTTHHHHHHS-CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCE
T ss_pred hHHHHH--hhcchHHHHHHHHHHHHHhc-CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEE
Confidence 776653 24444444556677776653 568999999999986532111 1112233333332 23589
Q ss_pred EEEccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCC
Q 002068 387 CIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (973)
Q Consensus 387 iI~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~ 463 (973)
+|++||.++ .+|+++.+ ||. .+.|+.|+.+++.+||+.++..+... ++..+..++..+.+| .
T Consensus 154 vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g~-----~ 218 (268)
T 2r62_A 154 VLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-----NDVNLQEVAKLTAGL-----A 218 (268)
T ss_dssp EEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-----SSCCTTTTTSSSCSS-----C
T ss_pred EEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-----CccCHHHHHHHcCCC-----C
Confidence 999999886 58899999 896 68999999999999998776532211 111233344444333 2
Q ss_pred chHHHHHHHHHHhhh
Q 002068 464 PDKAIDLVDEAAAKL 478 (973)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (973)
+.....+++.|+..+
T Consensus 219 g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 219 GADLANIINEAALLA 233 (268)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667777776654
No 90
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.63 E-value=2.9e-15 Score=164.47 Aligned_cols=206 Identities=17% Similarity=0.252 Sum_probs=142.8
Q ss_pred ccccccchHHHHHHHHHHHHHHcc---CCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAG---LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~---~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
+..++|++.+++.|...+...... ......|..++||+||||||||++|+++|+.+ +.+++.++|+++....
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-- 94 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSKY-- 94 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhcc--
Confidence 578999999999999888653210 00011222379999999999999999999998 6789999998764321
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCCcEEeccCE
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ 793 (973)
.|. .+ .....++..+....++||||||+|.+. ..+++.|+..++..... ....++
T Consensus 95 ---~~~----~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v 160 (297)
T 3b9p_A 95 ---VGD----GE-KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN------PDGDRI 160 (297)
T ss_dssp ---CSC----HH-HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------CE
T ss_pred ---cch----HH-HHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc------CCCCcE
Confidence 111 00 011234555566778999999999873 45777888888742211 012357
Q ss_pred EEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 002068 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIA 873 (973)
Q Consensus 794 iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~ 873 (973)
+||+|||. ...+.+++++||+..+.|++++.++...|+...+..
T Consensus 161 ~vi~~tn~------------------------------~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~------ 204 (297)
T 3b9p_A 161 VVLAATNR------------------------------PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK------ 204 (297)
T ss_dssp EEEEEESC------------------------------GGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG------
T ss_pred EEEeecCC------------------------------hhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh------
Confidence 89999997 234678899999999999999999999888876632
Q ss_pred hcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 874 DRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 874 ~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
. ...+++++++.|+... ..+..+.|...++.....
T Consensus 205 -~--~~~~~~~~~~~la~~~--~g~~~~~l~~l~~~a~~~ 239 (297)
T 3b9p_A 205 -Q--GSPLDTEALRRLAKIT--DGYSGSDLTALAKDAALE 239 (297)
T ss_dssp -G--SCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTH
T ss_pred -c--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 2 3457899999999863 344456777766654433
No 91
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=9.4e-16 Score=171.23 Aligned_cols=219 Identities=16% Similarity=0.124 Sum_probs=150.0
Q ss_pred hhhhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 240 KYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 240 ~~~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.+..++.+++++..++.++|++..++.+...+.. ..++||+||||||||++|+++++.+ +.+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~ 79 (331)
T 2r44_A 12 LYYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQF 79 (331)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEEC
T ss_pred HHHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEec
Confidence 3556788899999999999999999999888765 3589999999999999999999988 667787776
Q ss_pred ccccccccccchHH-HHHHHHHHHHHHhCC---CeEEEEccccccccCCCCCchhhHHHHHhhhhcCC------------
Q 002068 320 GALIAGAKYRGEFE-DRLKAVLKEVTESEG---QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (973)
Q Consensus 320 ~~~~~g~~~~g~~e-~~l~~~~~~~~~~~~---~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------ 383 (973)
..........|... ......+ ....+ ++||||||++.+. ...++.|...++.+
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~---~~~~g~l~~~vl~iDEi~~~~--------~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQHKGNF---EVKKGPVFSNFILADEVNRSP--------AKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp CTTCCHHHHHEEEEEETTTTEE---EEEECTTCSSEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred CCCCChhhcCCceeecCCCCce---EeccCcccccEEEEEccccCC--------HHHHHHHHHHHhcCceeeCCEEEECC
Confidence 32110000000000 0000000 00011 2699999999986 45677777777643
Q ss_pred -CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHH------------------hhhcCCccC
Q 002068 384 -ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERY------------------ELHHGVRIS 443 (973)
Q Consensus 384 -~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~------------------~~~~~v~i~ 443 (973)
++++|+++|+.++...+.+++++.+||. .+.++.|+.+++.+|++...... ....++.++
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred CCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 5678888887664333458999999998 59999999999999997765421 112377889
Q ss_pred HHHHHHHHHhcccccCC--------------CCCchHHHHHHHHHHhhhhhh
Q 002068 444 DSALVEAAILSDRYISG--------------RFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 444 ~~~l~~l~~~s~~~i~~--------------r~~p~~a~~lld~a~~~~~~~ 481 (973)
++++++++.++...... ...+..++.++..+.+.+.+.
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 99998888776432111 224667777777776665553
No 92
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.6e-15 Score=167.14 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=150.4
Q ss_pred hhcHHHHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 242 GKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 242 ~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
..+|.++|+|..|++++|++..++.+...+..+..+|++|+||||||||++++++++.+..... ...+..++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcc
Confidence 4589999999999999999999999888887777778999999999999999999999853211 23466666543
Q ss_pred ccccccccchHHHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCch
Q 002068 322 LIAGAKYRGEFEDRLKAVLKEVTES-----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 394 (973)
Q Consensus 322 ~~~g~~~~g~~e~~l~~~~~~~~~~-----~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~~ 394 (973)
. .| ...++..+..+... ++..|++|||+|.+. .+.++.|+..++. ....+|++||..
T Consensus 87 ~------~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 87 D------RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------NAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp C------CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred c------cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 2 12 12344444444321 236799999999996 4567778888873 467888888876
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHH
Q 002068 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (973)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a 474 (973)
. .+.+++.+||..+.|.+++.++..+++..++. ..++.++++++..++.++.+. ..+++.+++.+
T Consensus 151 ~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~----~~~~~i~~~~~~~i~~~s~G~------~r~~~~~l~~~ 215 (340)
T 1sxj_C 151 H-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLV----HEKLKLSPNAEKALIELSNGD------MRRVLNVLQSC 215 (340)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----TTTCCBCHHHHHHHHHHHTTC------HHHHHHHTTTT
T ss_pred c-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 4 68899999999999999999998888887775 357889999999999998643 33566666544
Q ss_pred H
Q 002068 475 A 475 (973)
Q Consensus 475 ~ 475 (973)
.
T Consensus 216 ~ 216 (340)
T 1sxj_C 216 K 216 (340)
T ss_dssp T
T ss_pred H
Confidence 3
No 93
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.62 E-value=7.1e-15 Score=158.14 Aligned_cols=201 Identities=21% Similarity=0.299 Sum_probs=129.0
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCC---CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (973)
++.++|++.+++.|.+.+......... ...+..++||+||||||||++|+++|+.+ +.+++.++|+++....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~-- 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI-- 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc--
Confidence 578999999999998877654321110 00122369999999999999999999998 6789999998874321
Q ss_pred hhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC------------HH---HHHHHHHhhcCCeEecCCCcEEe
Q 002068 725 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SD---VFNVFLQILDDGRVTDSQGRTVS 789 (973)
Q Consensus 725 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~------------~~---v~~~Ll~~le~g~~~~~~g~~v~ 789 (973)
.|. +......++..+....++||||||+|.+. .. .++.|+..++.-. .
T Consensus 80 ---~~~-----~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~---------~ 142 (262)
T 2qz4_A 80 ---GGL-----GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG---------T 142 (262)
T ss_dssp ---TTH-----HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC---------T
T ss_pred ---cCh-----hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC---------C
Confidence 000 00111233444555667999999999983 22 3445555554310 1
Q ss_pred ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 790 ~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
..+++||+|||. ...+++++++ ||+..+.|++++.++..+|++.++..
T Consensus 143 ~~~~~vi~~tn~------------------------------~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 143 TDHVIVLASTNR------------------------------ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TCCEEEEEEESC------------------------------GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCC------------------------------hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 246889999997 2235667777 99999999999999999999988754
Q ss_pred HHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 868 VQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.+ +..+++. .+.|+... ..+..+.+...+..+.
T Consensus 193 -------~~--~~~~~~~~~~~l~~~~--~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 193 -------LK--LTQSSTFYSQRLAELT--PGFSGADIANICNEAA 226 (262)
T ss_dssp -------TT--CCBTHHHHHHHHHHTC--TTCCHHHHHHHHHHHH
T ss_pred -------CC--CCcchhhHHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 22 3444443 46666642 2343466666666543
No 94
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4e-16 Score=184.47 Aligned_cols=201 Identities=14% Similarity=0.199 Sum_probs=141.8
Q ss_pred hhcHHHHHhcCCCCCCCCchHHHHHHHHHhcc-----------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCC
Q 002068 242 GKDLTAMASAGKLDPVIGRDDEIRRCIQILSR-----------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGD 304 (973)
Q Consensus 242 ~~~l~~~~~~~~l~~iiG~~~~i~~li~~l~~-----------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~ 304 (973)
...|+++|+|.+|++++|++..++.+.+.+.. ...+++||+||||||||++|+++|+.+
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---- 101 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---- 101 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----
Confidence 35789999999999999999999998888754 134678999999999999999999998
Q ss_pred CCcccCCCeEEEEEcccccccccccchHHHH---------HHHHHHHH----HHhCCCeEEEEccccccccCCCCCchhh
Q 002068 305 VPQALMNRKLISLDMGALIAGAKYRGEFEDR---------LKAVLKEV----TESEGQIILFIDEIHTVVGAGATNGAMD 371 (973)
Q Consensus 305 ~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~---------l~~~~~~~----~~~~~~~ILfiDEi~~l~~~~~~~~~~~ 371 (973)
+.+++.++++....... .+.. +..++..+ .....+.||||||+|.+.... ..
T Consensus 102 ------~~~~i~in~s~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~ 166 (516)
T 1sxj_A 102 ------GYDILEQNASDVRSKTL----LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RG 166 (516)
T ss_dssp ------TCEEEEECTTSCCCHHH----HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TT
T ss_pred ------CCCEEEEeCCCcchHHH----HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HH
Confidence 78999999876542110 0000 11111111 012457899999999998542 22
Q ss_pred HHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHH
Q 002068 372 AGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAA 451 (973)
Q Consensus 372 ~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~ 451 (973)
..+.|..+++..+..+|++|+.... ..-+.+.+|+..+.|+.|+.+++.+++..++.. .++.++++++..++
T Consensus 167 ~l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~la 238 (516)
T 1sxj_A 167 GVGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDRLI 238 (516)
T ss_dssp HHHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Confidence 3456667776555445555444321 122567888889999999999999999887764 46789999999999
Q ss_pred HhcccccCCCCCchHHHHHHHHHH
Q 002068 452 ILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 452 ~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
..+.+. ...++++++.++
T Consensus 239 ~~s~Gd------iR~~i~~L~~~~ 256 (516)
T 1sxj_A 239 QTTRGD------IRQVINLLSTIS 256 (516)
T ss_dssp HHTTTC------HHHHHHHHTHHH
T ss_pred HHcCCc------HHHHHHHHHHHH
Confidence 887542 335666665543
No 95
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=5.4e-15 Score=158.78 Aligned_cols=201 Identities=21% Similarity=0.350 Sum_probs=135.9
Q ss_pred ccccccchHHHHHHHHHHHHHHccCC--C--CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLS--D--PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~--~--~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (973)
++.++|++.+++.+...+........ . ...|. +++|+||||||||++|+++++.+ +.+++.++++++...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCC-EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCC-eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH--
Confidence 57899999999999887765332100 0 01122 69999999999999999999998 678999999887432
Q ss_pred hhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEecCCCcEEe
Q 002068 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTVS 789 (973)
Q Consensus 724 ~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~~~g~~v~ 789 (973)
++|.... ....++.......++|+||||||.+.+ ..++.++..++.-. .
T Consensus 85 ---~~~~~~~-----~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~ 147 (257)
T 1lv7_A 85 ---FVGVGAS-----RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------G 147 (257)
T ss_dssp ---CCCCCHH-----HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------S
T ss_pred ---hhhhhHH-----HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------c
Confidence 1222111 112334444555678999999987753 46677887776411 1
Q ss_pred ccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHHHH
Q 002068 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQLDR 867 (973)
Q Consensus 790 ~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l~~ 867 (973)
..+++||+|||.. ..+++.++. ||+..+.|++++.++..+|++.++.+
T Consensus 148 ~~~~~vI~~tn~~------------------------------~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 148 NEGIIVIAATNRP------------------------------DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp SSCEEEEEEESCT------------------------------TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeeCCc------------------------------hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 2468899999972 235566665 99999999999999999988776532
Q ss_pred HHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q 002068 868 VQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVENE 914 (973)
Q Consensus 868 ~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~~ 914 (973)
+.+++++ ...++. .|+ .|..|+|+++++++....
T Consensus 198 -----------~~l~~~~~~~~la~-~~~-G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 198 -----------VPLAPDIDAAIIAR-GTP-GFSGADLANLVNEAALFA 232 (257)
T ss_dssp -----------SCBCTTCCHHHHHH-TCT-TCCHHHHHHHHHHHHHHH
T ss_pred -----------CCCCccccHHHHHH-HcC-CCCHHHHHHHHHHHHHHH
Confidence 2233333 445554 454 456889988888765443
No 96
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.62 E-value=2.9e-15 Score=169.76 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=139.1
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhh----
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA---- 723 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~---- 723 (973)
++.++|++.++..+.........+.. |..++||+||||||||++|+++++.+. ...+++.++|..+...+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhH
Confidence 67899999999887766666554433 223799999999999999999999984 345888888776432210
Q ss_pred -hh----hhcC---------------------CCC-------CcccccccchhhHHH----H----hCC----CeEEEEc
Q 002068 724 -VS----RLIG---------------------APP-------GYVGYEEGGQLTEVV----R----RRP----YAVILFD 758 (973)
Q Consensus 724 -~~----~l~G---------------------~~~-------g~~g~~~~~~l~~~~----~----~~~----~~Vl~lD 758 (973)
.. +.+| .+. ++.|.. ...+...+ . ... ++|||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEI-KSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCccccc-HHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 00 0000 111 111100 01111111 1 111 4699999
Q ss_pred cccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 759 EIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 759 Eid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
|||.++++.++.|++.+++.. .. ++|+++|.+...+..... .. ...++|+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~-----------~~-~~ii~t~~~~~~i~~t~~---~~---------------~~~l~~~ 246 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDM-----------AP-VLIMATNRGITRIRGTSY---QS---------------PHGIPID 246 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTT-----------CC-EEEEEESCSEEECBTSSC---EE---------------ETTCCHH
T ss_pred hccccChHHHHHHHHHhhCcC-----------CC-eeeeecccceeeeeccCC---CC---------------cccCCHH
Confidence 999999999999999998632 22 344455543222111100 00 2336789
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 839 FMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 839 ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
|++||. .+.|+||+.+++.+|+...+.. . .+.++++++++|++..+. .+.|.+.+.+++.+.
T Consensus 247 l~sR~~-~i~~~~~~~~e~~~il~~~~~~-------~--~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 247 LLDRLL-IVSTTPYSEKDTKQILRIRCEE-------E--DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASL 308 (368)
T ss_dssp HHTTEE-EEEECCCCHHHHHHHHHHHHHH-------T--TCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHH
T ss_pred HHhhcc-EEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 999995 5899999999999999887643 3 357999999999997654 336777777776543
No 97
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=2.3e-15 Score=169.61 Aligned_cols=206 Identities=14% Similarity=0.146 Sum_probs=146.2
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHh-ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcc-cC-----------
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQIL-SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-LM----------- 310 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l-~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~-l~----------- 310 (973)
+|+++|+|.+|++++|++..++.+...+ .....++++|+||+|+||||+++.+++.+........ +.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 5788999999999999999999998888 6666667999999999999999999997643221100 00
Q ss_pred -------CCeEEEEEcccccccccccchHHHHHHHHHHHHHH-------------hCCCeEEEEccccccccCCCCCchh
Q 002068 311 -------NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE-------------SEGQIILFIDEIHTVVGAGATNGAM 370 (973)
Q Consensus 311 -------~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~-------------~~~~~ILfiDEi~~l~~~~~~~~~~ 370 (973)
...++.++.+.. +. .....++..++.+.. ..++.|++|||++.+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------~ 148 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM--GN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------K 148 (354)
T ss_dssp ---CCEECSSEEEECCC----------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------H
T ss_pred ceeeeecccceEEecHhhc--CC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--------H
Confidence 011233322111 10 001123444444321 1246699999999965 4
Q ss_pred hHHHHHhhhhc--CCCEEEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-HHHH
Q 002068 371 DAGNLLKPMLG--RGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSAL 447 (973)
Q Consensus 371 ~~~~~L~~~l~--~g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~-~~~l 447 (973)
+.++.|...++ ..+..+|.+|+..+ .+.+++++||..+.|++|+.++..++++.++.. .++.++ ++++
T Consensus 149 ~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l 219 (354)
T 1sxj_E 149 DAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDIL 219 (354)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHH
Confidence 45666777775 34678888888765 578999999999999999999999999888764 578899 9999
Q ss_pred HHHHHhcccccCCCCCchHHHHHHHHHHhhh
Q 002068 448 VEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 448 ~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~ 478 (973)
..++..+.+ .+.+++.+++.+....
T Consensus 220 ~~i~~~~~G------~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 220 KRIAQASNG------NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHTT------CHHHHHHHHTHHHHTT
T ss_pred HHHHHHcCC------CHHHHHHHHHHHHHhC
Confidence 999998854 3557888888777654
No 98
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=1.4e-15 Score=166.53 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=101.3
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---HhCCCeE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQII 351 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~---~~~~~~I 351 (973)
.+.++||+||||||||++|+++|+.+ +.+++.++++.+.. ++.|..+..++.+|..+. ....++|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~v 102 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMCC 102 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCeE
Confidence 44567999999999999999999999 88999999998874 478999999999998874 2346889
Q ss_pred EEEccccccccCCCCC-----chhhHHHHHhhhhc---------------CCCEEEEEccCchHHHhhhccCHHHHc--c
Q 002068 352 LFIDEIHTVVGAGATN-----GAMDAGNLLKPMLG---------------RGELRCIGATTLDEYRKYIEKDPALER--R 409 (973)
Q Consensus 352 LfiDEi~~l~~~~~~~-----~~~~~~~~L~~~l~---------------~g~i~iI~at~~~~~~~~~~~d~al~~--R 409 (973)
|||||||.+.+..... ....+.+.|..+++ ..++.+|+|||..+ .+|++++| |
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~R 177 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDGR 177 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHHH
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCCC
Confidence 9999999998633221 12345577777763 34789999999886 68999997 8
Q ss_pred CceEEecCCCHHHHHHHHHHHHH
Q 002068 410 FQQVYVDQPNVEDTISILRGLRE 432 (973)
Q Consensus 410 f~~i~~~~p~~~e~~~il~~~~~ 432 (973)
|+.+.. .|+.+++.+|++.+..
T Consensus 178 ~d~~i~-~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 178 MEKFYW-APTREDRIGVCTGIFR 199 (293)
T ss_dssp EEEEEE-CCCHHHHHHHHHHHHG
T ss_pred CceeEe-CcCHHHHHHHHHHhcc
Confidence 874332 6899999999986664
No 99
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.61 E-value=1.3e-14 Score=167.50 Aligned_cols=196 Identities=20% Similarity=0.379 Sum_probs=136.7
Q ss_pred ccccccchHHHHHHHHHHHHHHc-------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~-------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (973)
++.|+|++++++.+.+.+...+. +.. -|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~---~p~-gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGAR---MPK-GILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVE 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCC---CCS-EEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCC---CCC-eEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHH
Confidence 56799999999999888765432 122 233 59999999999999999999998 68999999988754
Q ss_pred hhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEecCCCc
Q 002068 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 721 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~~~g~ 786 (973)
. ++|. +......++..+....++||||||||.+.+ .+++.|+..|+.-.
T Consensus 88 ~-----~~g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~------- 150 (476)
T 2ce7_A 88 L-----FVGV-----GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD------- 150 (476)
T ss_dssp C-----CTTH-----HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-------
T ss_pred H-----Hhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-------
Confidence 3 1111 111112345555566789999999998753 36788888887310
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhh--cccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...+++||+|||. ...++|+++ +|||..|.|++|+.++..+|++.+
T Consensus 151 --~~~~viVIaaTn~------------------------------~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 151 --SKEGIIVMAATNR------------------------------PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp --GGGTEEEEEEESC------------------------------GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred --CCCCEEEEEecCC------------------------------hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 1247889999998 233566776 499999999999999999988766
Q ss_pred HHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
+.. . .+++++ ++.|+. .|++ +..+.|.+++++...
T Consensus 199 ~~~-------~----~l~~~v~l~~la~-~t~G-~sgadL~~lv~~Aal 234 (476)
T 2ce7_A 199 TRN-------K----PLAEDVNLEIIAK-RTPG-FVGADLENLVNEAAL 234 (476)
T ss_dssp HTT-------S----CBCTTCCHHHHHH-TCTT-CCHHHHHHHHHHHHH
T ss_pred HHh-------C----CCcchhhHHHHHH-hcCC-CcHHHHHHHHHHHHH
Confidence 532 1 223333 566665 3544 335778888776544
No 100
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.61 E-value=4.3e-16 Score=151.52 Aligned_cols=138 Identities=12% Similarity=0.187 Sum_probs=105.2
Q ss_pred ccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcC
Q 002068 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 729 (973)
Q Consensus 650 ~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G 729 (973)
.++|++.+++.+.+.+...... + .++||+||||||||++|+++++.. . +++.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~------~-~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR------T-SPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC------S-SCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC------C-CcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh-------
Confidence 5789999999999998875421 1 159999999999999999999877 3 89999999864421
Q ss_pred CCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhcc
Q 002068 730 APPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (973)
Q Consensus 730 ~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~ 809 (973)
..+.+..+.+++|||||||.++++.|..|+++++++. ..++.+|+|||.....+ .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2345556677899999999999999999999998752 24678999999854332 1
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCC
Q 002068 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD 853 (973)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~ 853 (973)
.. |+++|++|+.. .|.+|||.
T Consensus 122 ----------------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ----------------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -----------------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ----------------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 33 77889999854 68888873
No 101
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=6.7e-15 Score=160.54 Aligned_cols=197 Identities=20% Similarity=0.361 Sum_probs=132.8
Q ss_pred ccccccchHHHHHHHHHHHHHHc--------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA--------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
++.++|++.+++.|...+..... +.. +..++||+||||||||++|+++++.+ +.+++.++++++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE----PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELV 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC----CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC----CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHH
Confidence 57799999999999888764311 122 12269999999999999999999998 6789999988764
Q ss_pred chhhhhhhcCCCCCcccccc--cchhhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHhhcCCeEecCCCc
Q 002068 720 EKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~Vl~lDEid~l-----------~~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
.. +.|... ...++..+....++||||||||.+ ....+..|+++++...-..
T Consensus 89 ~~------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~---- 152 (285)
T 3h4m_A 89 KK------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD---- 152 (285)
T ss_dssp CC------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC----
T ss_pred Hh------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC----
Confidence 32 122111 123455566677799999999997 5566777777665311000
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
...+++||+|||. ...+++.+++ ||+.++.|++++.++..+|+...
T Consensus 153 --~~~~~~vI~ttn~------------------------------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 153 --ARGDVKIIGATNR------------------------------PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp --SSSSEEEEEECSC------------------------------GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred --CCCCEEEEEeCCC------------------------------chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH
Confidence 1136889999997 2346677777 99999999999999999999876
Q ss_pred HHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.. . .+. .+..++.|+... ..+..+.++.++..+.
T Consensus 201 ~~~-------~--~~~-~~~~~~~l~~~~--~g~~~~~i~~l~~~a~ 235 (285)
T 3h4m_A 201 TRK-------M--NLA-EDVNLEEIAKMT--EGCVGAELKAICTEAG 235 (285)
T ss_dssp HTT-------S--CBC-TTCCHHHHHHHC--TTCCHHHHHHHHHHHH
T ss_pred Hhc-------C--CCC-CcCCHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 532 1 222 122245555532 2334566666555543
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.60 E-value=6.1e-14 Score=188.76 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=92.5
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEc
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiD 355 (973)
..+.++.||+|||||++++.+|+.+ |.+++.++|++-+.. ..+..+|..+... +.++++|
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g~~~~--Gaw~~~D 704 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVGITQI--GAWGCFD 704 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHHHHHH--TCEEEEE
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHHHHhc--CCEeeeh
Confidence 3568899999999999999999999 999999999875432 2356677777654 4699999
Q ss_pred cccccccCCCCCchhhHHHHH-------hhhhc--------C-------CCEEEEEccCchHHHhhhccCHHHHccCceE
Q 002068 356 EIHTVVGAGATNGAMDAGNLL-------KPMLG--------R-------GELRCIGATTLDEYRKYIEKDPALERRFQQV 413 (973)
Q Consensus 356 Ei~~l~~~~~~~~~~~~~~~L-------~~~l~--------~-------g~i~iI~at~~~~~~~~~~~d~al~~Rf~~i 413 (973)
|++++.. ++...+ ...+. . ....+++|.|+ .|....++++++++||..|
T Consensus 705 E~nr~~~--------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~~Fr~v 775 (2695)
T 4akg_A 705 EFNRLDE--------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKKSFREF 775 (2695)
T ss_dssp TTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHTTEEEE
T ss_pred hhhhcCh--------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHhheEEE
Confidence 9998863 233333 11111 1 24457777776 4766678999999999999
Q ss_pred EecCCCHHHHHHHH
Q 002068 414 YVDQPNVEDTISIL 427 (973)
Q Consensus 414 ~~~~p~~~e~~~il 427 (973)
.+..|+.+...+|+
T Consensus 776 ~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 776 SMKSPQSGTIAEMI 789 (2695)
T ss_dssp ECCCCCHHHHHHHH
T ss_pred EeeCCCHHHHHHHH
Confidence 99999998877775
No 103
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.60 E-value=4.4e-15 Score=173.00 Aligned_cols=201 Identities=17% Similarity=0.273 Sum_probs=140.8
Q ss_pred hccccccchHHHHHHHHHHHHHH--------ccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-+..++|++.+++.|.+.+.... .+.. +..++||+||||||||++|+++|+.+ +.+|+.++|+++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK----PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC----CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 35679999999999998886531 1222 12269999999999999999999998 789999999887
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHhhcCCeEecCCCcE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~-----------~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
... ++|...+. ...++..+....++||||||||.+.+ .+++.|+..|+...
T Consensus 275 ~~~-----~~g~~~~~-----~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------- 336 (489)
T 3hu3_A 275 MSK-----LAGESESN-----LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (489)
T ss_dssp HTS-----CTTHHHHH-----HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--------
T ss_pred hhh-----hcchhHHH-----HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--------
Confidence 532 22221111 12334455566678999999987754 68999999998421
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
...+++||+|||. ...+++++.+ ||+..|.|++++.++..+|++.++
T Consensus 337 -~~~~v~vIaaTn~------------------------------~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 337 -QRAHVIVMAATNR------------------------------PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp -TTSCEEEEEEESC------------------------------GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred -cCCceEEEEecCC------------------------------ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 1247899999998 2336677876 999999999999999999998765
Q ss_pred HHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q 002068 866 DRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENEL 915 (973)
Q Consensus 866 ~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~l 915 (973)
.. ..+. .+..++.|+.. ...|..+.|...+.......+
T Consensus 386 ~~---------~~l~-~~~~l~~la~~--t~g~s~~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 386 KN---------MKLA-DDVDLEQVANE--THGHVGADLAALCSEAALQAI 423 (489)
T ss_dssp TT---------SCBC-TTCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHH
T ss_pred hc---------CCCc-chhhHHHHHHH--ccCCcHHHHHHHHHHHHHHHH
Confidence 32 2222 12234556663 334556777777766554444
No 104
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=156.96 Aligned_cols=201 Identities=22% Similarity=0.297 Sum_probs=133.7
Q ss_pred CCCCCCCchHHHHHHHHHh-------------ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l-------------~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+|+++.|.++..+.+.+.+ .-..+.+++|+||||||||+|++++|..+ +..++.++.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~g 77 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVKG 77 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEEc
Confidence 6778888877666555432 11334569999999999999999999987 667899988
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chhhHHHHHhhhhc----CCCEEEEEccC
Q 002068 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG----RGELRCIGATT 392 (973)
Q Consensus 320 ~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l~----~g~i~iI~at~ 392 (973)
..+.. .+.|+.+..+..+|..+... .++|+|+||++.+...+... ......+.+...++ +..+.++++||
T Consensus 78 ~~l~~--~~~~~~~~~i~~vf~~a~~~-~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 78 PELLN--MYVGESERAVRQVFQRAKNS-APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp TTTCS--STTHHHHHHHHHHHHHHHHT-CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred HHHHh--hhhhHHHHHHHHHHHHHHhc-CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 77753 46788888899999887543 57899999999987543211 11223344444443 34678889999
Q ss_pred chHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-HHHHHHHHHhcccccCCCCCchHHH
Q 002068 393 LDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKAI 468 (973)
Q Consensus 393 ~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~-~~~l~~l~~~s~~~i~~r~~p~~a~ 468 (973)
.++ .+|+++.| ||+ .|.|+.|+.+++.+||+.+.+.. ....+. +..+..++..+. ...+.+.+..
T Consensus 155 ~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~---~~g~sgadl~ 223 (274)
T 2x8a_A 155 RPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLR---CDCYTGADLS 223 (274)
T ss_dssp CGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSG---GGSCCHHHHH
T ss_pred Chh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhc---cCCcCHHHHH
Confidence 987 48999999 998 68999999999999998876531 111111 222444454321 1223455666
Q ss_pred HHHHHHHhh
Q 002068 469 DLVDEAAAK 477 (973)
Q Consensus 469 ~lld~a~~~ 477 (973)
.++.+|+..
T Consensus 224 ~l~~~a~~~ 232 (274)
T 2x8a_A 224 ALVREASIC 232 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 105
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.58 E-value=4.7e-15 Score=172.19 Aligned_cols=199 Identities=25% Similarity=0.367 Sum_probs=140.7
Q ss_pred cCCCCCCCCchHHHHHHHHH---hcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQI---LSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~---l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+-+|++++|.++.+..+.++ +.. ..+.+++|+||||||||+||++++..+ +.+++.++
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~ 96 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 96 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 45799999999866555544 321 224568999999999999999999987 67899999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---chh---hHHHHHhhhhc----CCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAM---DAGNLLKPMLG----RGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~---~~~~~L~~~l~----~g~i~iI 388 (973)
++.+.. .+.|....++..+|+.+.. ..++|+||||+|.+....... +.. ...+.|...++ ...+++|
T Consensus 97 g~~~~~--~~~g~~~~~v~~lfq~a~~-~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 97 GSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 173 (499)
T ss_dssp GGGGTS--SCTTHHHHHHHHHTTTSSS-SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEE
T ss_pred hhHHHH--hhhhhHHHHHHHHHHHHHh-cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEE
Confidence 888763 4677777778888876643 246899999999987554321 111 23334444443 3457889
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHH-HHHHHHhcccccCCCCCc
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLP 464 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~-l~~l~~~s~~~i~~r~~p 464 (973)
++||.++ .+|+++.| ||+ .|.|+.|+.+++.+||+.... ++.+++++ +..++..+.+|. +
T Consensus 174 Aatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~~-----g 237 (499)
T 2dhr_A 174 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----G 237 (499)
T ss_dssp ECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSCC-----H
T ss_pred EecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCCC-----H
Confidence 9999887 48999999 787 689999999999999975543 33444333 566666665543 3
Q ss_pred hHHHHHHHHHHhhh
Q 002068 465 DKAIDLVDEAAAKL 478 (973)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (973)
.....+++.|+..+
T Consensus 238 adL~~lv~~Aa~~A 251 (499)
T 2dhr_A 238 ADLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777776544
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9e-15 Score=159.82 Aligned_cols=212 Identities=8% Similarity=0.057 Sum_probs=142.5
Q ss_pred CCCchHHHHHHHHHh----ccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc--------
Q 002068 257 VIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------- 324 (973)
Q Consensus 257 iiG~~~~i~~li~~l----~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------- 324 (973)
+.||++++..+...| ....+++++|+||||||||++++.+++.+....-...+....++.+|+..+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 678999999988765 34677889999999999999999999999542111112245788899765432
Q ss_pred -----ccc-ccchHHHHHHHHHHHH-HHhCCCeEEEEccccccccCCCCCchhhHHHHHhhh--hcCCCEEEEEccCchH
Q 002068 325 -----GAK-YRGEFEDRLKAVLKEV-TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM--LGRGELRCIGATTLDE 395 (973)
Q Consensus 325 -----g~~-~~g~~e~~l~~~~~~~-~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~--l~~g~i~iI~at~~~~ 395 (973)
|.. ..|.....+..+|..+ .....++|+||||+|.+. . .++..-|..+ .+.+++.+|+++|..+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S------EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C------THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c------chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 111 1234455666777664 223457899999999998 1 2332222222 2467899999888754
Q ss_pred HHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhh-------------------------------cCCcc
Q 002068 396 YRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELH-------------------------------HGVRI 442 (973)
Q Consensus 396 ~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~-------------------------------~~v~i 442 (973)
... ..+++++++||. .|.|++++.++..+|++..+...... ..+.+
T Consensus 175 ~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 211 235678889995 68999999999999998887764321 11257
Q ss_pred CHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhh
Q 002068 443 SDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 443 ~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~ 479 (973)
++++++.+++......++ -.+|++++..|+..+.
T Consensus 254 ~~~ai~~~A~~vA~~~GD---~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGS---TEKAFKICEAAVEISK 287 (318)
T ss_dssp CHHHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHH
Confidence 999999998854322222 2378888887776543
No 107
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.57 E-value=4e-15 Score=179.18 Aligned_cols=222 Identities=15% Similarity=0.181 Sum_probs=143.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc-------
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------- 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~------- 720 (973)
+..++||+.+++.+...+... .+++|+||||||||++|++||..+.......+.+++.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g-----------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK-----------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT-----------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred cceEECchhhHhhccccccCC-----------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 467999999998888777631 15999999999999999999998854432333332222110
Q ss_pred -------------------------------------------------------hhhhhhhcCCCC-------Cccccc
Q 002068 721 -------------------------------------------------------KHAVSRLIGAPP-------GYVGYE 738 (973)
Q Consensus 721 -------------------------------------------------------~~~~~~l~G~~~-------g~~g~~ 738 (973)
......++|... +..+..
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 111223343210 000000
Q ss_pred ccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCC----------cEEeccCEEEEEecCCChhhhhc
Q 002068 739 EGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG----------RTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 739 ~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g----------~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
......+.+..+.++||||||++.+++.+|+.|+++|+++.+....+ ......++.||+|||..
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~------ 262 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD------ 262 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH------
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH------
Confidence 00112345667888999999999999999999999999998875432 11222478899999972
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc---eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHH
Q 002068 809 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAA 885 (973)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d---~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a 885 (973)
+...|+|+|++||+ ..+.|++...+ ....+..++..+.+.+...+....+++++
T Consensus 263 ----------------------~~~~l~~~l~~R~~v~~i~i~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ls~eA 319 (604)
T 3k1j_A 263 ----------------------TVDKMHPALRSRIRGYGYEVYMRTTMPD-TIENRRKLVQFVAQEVKRDGKIPHFTKEA 319 (604)
T ss_dssp ----------------------HHHHSCHHHHHHHHHHSEEEECCSEEEC-CHHHHHHHHHHHHHHHHHHCSSCCBBHHH
T ss_pred ----------------------HHhhcCHHHHHHhhccceEeeccccccC-CHHHHHHHHHHHHHHHhhccCcccCCHHH
Confidence 12348999999996 56777665433 23344445555555555444456899999
Q ss_pred HHHHHhcCC--CCCC-----CccHHHHHHHH
Q 002068 886 IQLLGSLGY--DPNY-----GARPVKRVIQQ 909 (973)
Q Consensus 886 ~~~L~~~~~--~~~~-----gaR~L~r~i~~ 909 (973)
+..|.++.+ .+.- ..|.+.++++.
T Consensus 320 l~~Li~~~~r~~g~r~~l~~~~R~l~~llr~ 350 (604)
T 3k1j_A 320 VEEIVREAQKRAGRKGHLTLRLRDLGGIVRA 350 (604)
T ss_dssp HHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence 999998654 3321 36777766664
No 108
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.56 E-value=6.5e-14 Score=154.68 Aligned_cols=181 Identities=22% Similarity=0.285 Sum_probs=128.6
Q ss_pred CCCCchHHHHHHHHHhccC---------CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 256 PVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~---------~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
.++|++..++.+...+.+. +..+++|+||||||||++|+++++.+... +.+++.++++.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 4899999988888876542 12468999999999999999999998443 4568899987654211
Q ss_pred c----------ccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------
Q 002068 327 K----------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (973)
Q Consensus 327 ~----------~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 383 (973)
. +.|... ...+..+.....++||||||++.+. .++++.|..+++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~---~~~~~~~~~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE---GGQLTEAVRRRPYSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTT---CCHHHHHHHHCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCccccccc---cchHHHHHHhCCCeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 0 111000 0122223333456899999999986 56788888888643
Q ss_pred CEEEEEccCch---------------HHHh------hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh----
Q 002068 384 ELRCIGATTLD---------------EYRK------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH---- 437 (973)
Q Consensus 384 ~i~iI~at~~~---------------~~~~------~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~---- 437 (973)
++.+|++||.. +... .-.++++|.+||. .+.+.+|+.+++..|++.++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 55699999982 1111 1157899999996 67888899999999998877765432
Q ss_pred -cCCccCHHHHHHHHHhc
Q 002068 438 -HGVRISDSALVEAAILS 454 (973)
Q Consensus 438 -~~v~i~~~~l~~l~~~s 454 (973)
..+.++++++..++..+
T Consensus 240 ~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERG 257 (311)
T ss_dssp TCEEEECHHHHHHHHHHS
T ss_pred CcEEEeCHHHHHHHHHhC
Confidence 24678999999998865
No 109
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.56 E-value=2.5e-14 Score=161.71 Aligned_cols=187 Identities=22% Similarity=0.304 Sum_probs=128.8
Q ss_pred CCCchHHHHHHHHHhc-------------c--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 257 VIGRDDEIRRCIQILS-------------R--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 257 iiG~~~~i~~li~~l~-------------~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
++|++..++.+...+. + ..+.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 8999999888887762 1 145789999999999999999999998 78999999987
Q ss_pred ccccccccchH-HHHHHHHHHHHH---HhCCCeEEEEccccccccCCCCCc------hhhHHHHHhhhhcCC--------
Q 002068 322 LIAGAKYRGEF-EDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNG------AMDAGNLLKPMLGRG-------- 383 (973)
Q Consensus 322 ~~~g~~~~g~~-e~~l~~~~~~~~---~~~~~~ILfiDEi~~l~~~~~~~~------~~~~~~~L~~~l~~g-------- 383 (973)
+.. ..+.|.. ...+..++..+. ....++||||||++.+...+...+ ...+++.|+++++..
T Consensus 87 l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 87 LTE-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTT-CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred hcc-cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 653 2355553 444555555431 112357999999999986643321 122778888888711
Q ss_pred ---------------CEEEEEccCchHHHhh----------------------------------------hccCHHHHc
Q 002068 384 ---------------ELRCIGATTLDEYRKY----------------------------------------IEKDPALER 408 (973)
Q Consensus 384 ---------------~i~iI~at~~~~~~~~----------------------------------------~~~d~al~~ 408 (973)
++.+|++++...+... ..+.|+|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 2234444443211110 116899999
Q ss_pred cCce-EEecCCCHHHHHHHHHH----HHHHHhhh-----cCCccCHHHHHHHHHhc
Q 002068 409 RFQQ-VYVDQPNVEDTISILRG----LRERYELH-----HGVRISDSALVEAAILS 454 (973)
Q Consensus 409 Rf~~-i~~~~p~~~e~~~il~~----~~~~~~~~-----~~v~i~~~~l~~l~~~s 454 (973)
||+. +.+.+|+.+++.+|+.. +..++... ..+.+++++++.+++.+
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 9985 56788899999999876 65554422 23568999999998764
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.56 E-value=5.5e-14 Score=146.53 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=133.2
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~ 725 (973)
+..++|++..++.+...+... ++ .+++|+||||||||++|+.+++.+... ...++.++++.........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK--------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC--------CC-CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 467899999999988877631 11 159999999999999999999987432 3456777776543221111
Q ss_pred hhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
. .+..... ...+.||+|||+|.+++..++.|+++++.. ..++.+|+|+|
T Consensus 87 ~---------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~ 140 (226)
T 2chg_A 87 H---------------KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCN 140 (226)
T ss_dssp H---------------HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEES
T ss_pred H---------------HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEEEeC
Confidence 1 1111111 245689999999999999999999999852 24678899988
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
. ...+.+.+.+|+. .+.|+|++.+++.+++...+.. .+ +.
T Consensus 141 ~------------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~ 180 (226)
T 2chg_A 141 Y------------------------------VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-------EG--VK 180 (226)
T ss_dssp C------------------------------GGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT--CC
T ss_pred C------------------------------hhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-------cC--CC
Confidence 6 2336778999995 8999999999999988876643 23 45
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+++++++.|+.. +.++ .|.+.+.++...
T Consensus 181 ~~~~~~~~l~~~-~~g~--~r~l~~~l~~~~ 208 (226)
T 2chg_A 181 ITEDGLEALIYI-SGGD--FRKAINALQGAA 208 (226)
T ss_dssp BCHHHHHHHHHH-HTTC--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-cCCC--HHHHHHHHHHHH
Confidence 899999999874 4443 677666666543
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.56 E-value=5.9e-15 Score=159.90 Aligned_cols=198 Identities=17% Similarity=0.274 Sum_probs=129.2
Q ss_pred hccccccchHHHHHHHHH----HHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh
Q 002068 647 LHKRVVGQDPAVKSVAEA----IQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 722 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~----i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~ 722 (973)
+...++|++.+++.+... +...... ...+..++||+||||||||++|+++|+.+ +.+++.++|++.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~---- 100 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK---- 100 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG----
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH----
Confidence 446788999888877774 2222211 12334589999999999999999999997 678999988752
Q ss_pred hhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcccccc----------CHHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 723 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA----------HSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 723 ~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l----------~~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
++|...+. .......++..+....++||||||||.+ ...+++.|...++... ....+
T Consensus 101 ----~~g~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~ 167 (272)
T 1d2n_A 101 ----MIGFSETA-KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRK 167 (272)
T ss_dssp ----CTTCCHHH-HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCE
T ss_pred ----hcCCchHH-HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCC
Confidence 23321100 0000112333344567899999999997 5567777777776311 01135
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccCh-hhhcccceEEEcCCCCH-HHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP-EFMNRVDEYIVFQPLDR-DQISSIVRLQLDRVQK 870 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p-~ll~R~d~~i~f~~l~~-~~l~~I~~~~l~~~~~ 870 (973)
++||+|||.. + .+.+ .+.+||+..|.|+|++. +++..++...
T Consensus 168 ~~ii~ttn~~------------------~------------~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~------ 211 (272)
T 1d2n_A 168 LLIIGTTSRK------------------D------------VLQEMEMLNAFSTTIHVPNIATGEQLLEALELL------ 211 (272)
T ss_dssp EEEEEEESCH------------------H------------HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH------
T ss_pred EEEEEecCCh------------------h------------hcchhhhhcccceEEcCCCccHHHHHHHHHHhc------
Confidence 6799999971 1 1122 46789989999999987 6666655431
Q ss_pred HHHhcCCceecCHHHHHHHHhc--CCCCCCCccHHHHHHHHHH
Q 002068 871 RIADRKMKMQVTDAAIQLLGSL--GYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 871 ~~~~~~~~l~~~~~a~~~L~~~--~~~~~~gaR~L~r~i~~~i 911 (973)
..++++++..|++. +|++..++|.+.+.++...
T Consensus 212 --------~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 212 --------GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp --------TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred --------CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 13688888888874 3444446888888887643
No 112
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.55 E-value=4.1e-15 Score=160.77 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=116.4
Q ss_pred ccccccchHHHHHHHHHHHHHHc-------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~-------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (973)
++.++|++.+++.+...+..... +... |. ++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~-~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKI---PK-GVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIE 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCC---CS-CCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCC---Cc-eEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHH
Confidence 56799999999999887764321 2221 22 48999999999999999999998 67899999887643
Q ss_pred hhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHH---------------HHHHHHHhhcCCeEecCCC
Q 002068 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD---------------VFNVFLQILDDGRVTDSQG 785 (973)
Q Consensus 721 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~---------------v~~~Ll~~le~g~~~~~~g 785 (973)
. +.|.... ....++..+....++||||||+|.+.+. .++.|+..++.-.
T Consensus 83 ~-----~~~~~~~-----~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 146 (268)
T 2r62_A 83 M-----FVGLGAS-----RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG------ 146 (268)
T ss_dssp S-----CSSSCSS-----SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS------
T ss_pred h-----hcchHHH-----HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc------
Confidence 2 2232211 1234556666667789999999998754 3556666665311
Q ss_pred cEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHH
Q 002068 786 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 786 ~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
....+++||+|||.. ..+++++++ ||+..+.|++++.++..+|++.
T Consensus 147 --~~~~~v~vi~ttn~~------------------------------~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~ 194 (268)
T 2r62_A 147 --SENAPVIVLAATNRP------------------------------EILDPALMRPGRFDRQVLVDKPDFNGRVEILKV 194 (268)
T ss_dssp --CSCSCCEEEECBSCC------------------------------TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHH
T ss_pred --cCCCCEEEEEecCCc------------------------------hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHH
Confidence 012357899999972 235667776 9999999999999999999977
Q ss_pred HH
Q 002068 864 QL 865 (973)
Q Consensus 864 ~l 865 (973)
++
T Consensus 195 ~~ 196 (268)
T 2r62_A 195 HI 196 (268)
T ss_dssp HT
T ss_pred HH
Confidence 66
No 113
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.55 E-value=4.3e-14 Score=151.42 Aligned_cols=199 Identities=25% Similarity=0.365 Sum_probs=133.1
Q ss_pred cCCCCCCCCchHHHHHHHHHh---cc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQIL---SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l---~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+-+|++++|.+.....+.++. .. ..+.+++|+||||||||+++++++..+ +..++.++
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~ 81 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 81 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEee
Confidence 346788999886554444332 11 224568999999999999999999987 56788888
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---ch---hhHHHHHhhhhc----CCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~g~i~iI 388 (973)
...+.. .+.|.....+..+|+.+.. ..++++|+||+|.+....... .. ....+.+...++ ...+.++
T Consensus 82 ~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 82 GSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHH--SCTTHHHHHHHHHHHHHTT-SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHh-cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 766542 2456666777778877643 346899999999887543211 11 122333333343 2346778
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHH-HHHHHHhcccccCCCCCc
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLP 464 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~-l~~l~~~s~~~i~~r~~p 464 (973)
++|+.++ .+|+++.| ||+ .|.++.|+.+++.+||+.+.. +..+++++ +..++..+.+|. +
T Consensus 159 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~ 222 (254)
T 1ixz_A 159 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----G 222 (254)
T ss_dssp EEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----H
T ss_pred EccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc------CCCCCcccCHHHHHHHcCCCC-----H
Confidence 8888876 48999999 787 689999999999999986654 23333333 666777776553 3
Q ss_pred hHHHHHHHHHHhhh
Q 002068 465 DKAIDLVDEAAAKL 478 (973)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (973)
.....++..|+..+
T Consensus 223 ~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 223 ADLENLLNEAALLA 236 (254)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777776544
No 114
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=2.1e-15 Score=180.17 Aligned_cols=236 Identities=12% Similarity=0.126 Sum_probs=143.0
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCC------CCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEE-
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLS------DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR- 712 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~------~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~- 712 (973)
+..+...+...++||+.++..+..++. +.. ...++..++||+||||||||++|+++|+.+. ..+..
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~----~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~~~ 358 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALF----GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVYTT 358 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTT----CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEECCC
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHh----CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC---CceecC
Confidence 345666788899999988777744332 111 0001112799999999999999999999883 22222
Q ss_pred ---eccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecC-CCcEE
Q 002068 713 ---IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS-QGRTV 788 (973)
Q Consensus 713 ---i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~-~g~~v 788 (973)
.++.++.........-|. . ....+.+..+.++|+|||||+++++++++.|+++|++|.++.. .|...
T Consensus 359 ~~~~~~~~l~~~~~~~~~~g~----~-----~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~ 429 (595)
T 3f9v_A 359 GKGSTAAGLTAAVVREKGTGE----Y-----YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVA 429 (595)
T ss_dssp TTCSTTTTSEEECSSGGGTSS----C-----SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEE
T ss_pred CCccccccccceeeecccccc----c-----cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEE
Confidence 122222211110111110 0 0112345556778999999999999999999999999998753 36555
Q ss_pred ecc-CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHH-
Q 002068 789 SFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLD- 866 (973)
Q Consensus 789 ~~~-~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~- 866 (973)
.++ ++.||+|||+.......... ..+ .-.++++|++|||.++.+.++..++...|+...+.
T Consensus 430 ~~~~~~~vIaatNp~~G~~~~~~~---~~~--------------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~ 492 (595)
T 3f9v_A 430 KLNARAAVIAAGNPKFGRYISERP---VSD--------------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDV 492 (595)
T ss_dssp EECCCCEEEEEECCTTCCSCTTSC---SCT--------------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTT
T ss_pred EecCceEEEEEcCCcCCccCcccC---chh--------------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 554 88999999985211110000 000 11478999999997766666655445555554432
Q ss_pred ----------------HHHHHHHhcCCceecCHHHHHHHHhcCC------------CCCCCccHHHHHHHH
Q 002068 867 ----------------RVQKRIADRKMKMQVTDAAIQLLGSLGY------------DPNYGARPVKRVIQQ 909 (973)
Q Consensus 867 ----------------~~~~~~~~~~~~l~~~~~a~~~L~~~~~------------~~~~gaR~L~r~i~~ 909 (973)
++....+ ..+...+++++.++|.++.. ....++|.+.++++-
T Consensus 493 ~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirl 562 (595)
T 3f9v_A 493 HSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRI 562 (595)
T ss_dssp TCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHH
T ss_pred hhccccccCCCHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHH
Confidence 1111111 11234788888888887521 234568888777764
No 115
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.54 E-value=2.9e-14 Score=168.96 Aligned_cols=179 Identities=17% Similarity=0.287 Sum_probs=119.0
Q ss_pred CCCCchHHHHHHHHHhc------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc---
Q 002068 256 PVIGRDDEIRRCIQILS------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 326 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~--- 326 (973)
+++|.++..+++.+.+. .....+++|+||||||||++|++++..+ +.++..++++.+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 37898887776655431 1234568999999999999999999998 6778888876643211
Q ss_pred ----cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC-----------------CCE
Q 002068 327 ----KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 385 (973)
Q Consensus 327 ----~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------g~i 385 (973)
.+.|...+.+...|..+.. .+.||||||+|.+..... .+.++.|+.+++. .++
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~--~~~vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGK--LNPVFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------CHHHHHHTTCS--SSEEEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hHHHHHhccCchHHHHHHHHhhc--cCCEEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 3455555555555555432 345999999999985432 2244566666642 467
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHH-HHHhhhc-----CCccCHHHHHHHHHhcc
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLR-ERYELHH-----GVRISDSALVEAAILSD 455 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~-~~~~~~~-----~v~i~~~~l~~l~~~s~ 455 (973)
++|+|||... .++++|++||..|.|+.|+.+++..|++..+ .++...+ ++.++++++..++....
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 8999999875 6899999999999999999999999997644 3322222 45789999988877443
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.3e-14 Score=156.62 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=157.3
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC-------CcceEEeccccccch
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVRIDMSEYMEK 721 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~-------~~~~~~i~~~~~~~~ 721 (973)
+.+.|.++.+..|...+.....+.. | .+++|+||||||||++++.+++.+... ...++.+||..+.+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~----~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQ----N-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----C-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCC----C-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 3477888888888888877654322 2 279999999999999999999998421 245789999887665
Q ss_pred hhh-----hhhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEecc
Q 002068 722 HAV-----SRLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 722 ~~~-----~~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
... ..+.|..... +. ....+...+. .....||+|||||.+. -|+.|+.+++-.. ....
T Consensus 95 ~~~~~~I~~~L~g~~~~~-~~-~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s 162 (318)
T 3te6_A 95 DALYEKIWFAISKENLCG-DI-SLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNS 162 (318)
T ss_dssp HHHHHHHHHHHSCCC--C-CC-CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSC
T ss_pred HHHHHHHHHHhcCCCCCc-hH-HHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCC
Confidence 433 2444543211 11 0112333333 3445799999999997 4666666664211 0224
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQLDRVQK 870 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~~~l~~I~~~~l~~~~~ 870 (973)
+++||+++|.-. .. ...+.+.+.+|+. ..|.|+||+.+++.+|+...+..+..
T Consensus 163 ~~~vI~i~n~~d-----------~~---------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~ 216 (318)
T 3te6_A 163 KLSIICVGGHNV-----------TI---------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLK 216 (318)
T ss_dssp CEEEEEECCSSC-----------CC---------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_pred cEEEEEEecCcc-----------cc---------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhc
Confidence 678999998611 00 1113456678886 58999999999999999999876432
Q ss_pred H-H---------------H----------hcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHcCCC
Q 002068 871 R-I---------------A----------DRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEF 924 (973)
Q Consensus 871 ~-~---------------~----------~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~~~~ 924 (973)
. + . -.++.+.++++|+++++++.......+|---.++++++...-.+.+.+...
T Consensus 217 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~ 296 (318)
T 3te6_A 217 PFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGL 296 (318)
T ss_dssp CEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred cccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1 0 0 001234789999999998633334458888888888887777777766554
Q ss_pred CCCCEEEEEee
Q 002068 925 KDEDTIVIDTE 935 (973)
Q Consensus 925 ~~~~~i~v~~~ 935 (973)
. .+++.|+..
T Consensus 297 ~-~~~~~i~~~ 306 (318)
T 3te6_A 297 Q-KGKLVVSQE 306 (318)
T ss_dssp E-TTEECCSEE
T ss_pred C-CCcEEeeHH
Confidence 3 345555554
No 117
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.54 E-value=9.1e-14 Score=157.90 Aligned_cols=207 Identities=23% Similarity=0.311 Sum_probs=131.7
Q ss_pred CCCCchHHHHHHHHHhc------------------------------cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCC
Q 002068 256 PVIGRDDEIRRCIQILS------------------------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDV 305 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~------------------------------~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~ 305 (973)
.++|++..++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 38999988887776651 1245789999999999999999999998
Q ss_pred CcccCCCeEEEEEcccccccccccch-HHHHHHHHHHHHH---HhCCCeEEEEccccccccCCCCC------chhhHHHH
Q 002068 306 PQALMNRKLISLDMGALIAGAKYRGE-FEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATN------GAMDAGNL 375 (973)
Q Consensus 306 p~~l~~~~~~~l~~~~~~~g~~~~g~-~e~~l~~~~~~~~---~~~~~~ILfiDEi~~l~~~~~~~------~~~~~~~~ 375 (973)
+.+++.++++.+.. ..+.|. .+..+..++.... ....++||||||+|.+...+... ....+++.
T Consensus 97 -----~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTE-AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhh-cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 77899999887642 124443 2333444443321 11246799999999998652211 11237788
Q ss_pred HhhhhcCC-----------------------CEEEEEccCchHHHh----------------------------------
Q 002068 376 LKPMLGRG-----------------------ELRCIGATTLDEYRK---------------------------------- 398 (973)
Q Consensus 376 L~~~l~~g-----------------------~i~iI~at~~~~~~~---------------------------------- 398 (973)
|+.+++.+ ++.+|++||......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 357788776321110
Q ss_pred --hhccCHHHHccCc-eEEecCCCHHHHHHHHH----HHHHHHhhh-----cCCccCHHHHHHHHHhccc-ccCCCCCch
Q 002068 399 --YIEKDPALERRFQ-QVYVDQPNVEDTISILR----GLRERYELH-----HGVRISDSALVEAAILSDR-YISGRFLPD 465 (973)
Q Consensus 399 --~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~----~~~~~~~~~-----~~v~i~~~~l~~l~~~s~~-~i~~r~~p~ 465 (973)
...+.|+|.+||. .+.|++++.++...|+. .+..++... .++.++++++..++..+.. ....|
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R---- 326 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR---- 326 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGG----
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcH----
Confidence 1246799999996 68899999999999986 354443322 2567999999999888531 12222
Q ss_pred HHHHHHHHHHhh
Q 002068 466 KAIDLVDEAAAK 477 (973)
Q Consensus 466 ~a~~lld~a~~~ 477 (973)
....+++.++..
T Consensus 327 ~L~~~le~~~~~ 338 (376)
T 1um8_A 327 GLRAIIEDFCLD 338 (376)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 118
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.54 E-value=1.6e-13 Score=153.03 Aligned_cols=192 Identities=24% Similarity=0.292 Sum_probs=136.0
Q ss_pred cHHHHHhcCCCCCCCCchHHHHHHHHHhcc-----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~li~~l~~-----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
.|.+.+++.+|+.++|++..++.+-..+.. ....+++|+||||+||||+++.++..+ ++++...+
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 357778999999999998877776655532 234688999999999999999999998 55555444
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------- 383 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------- 383 (973)
...+.. + ..+..++.. ...+.|+||||+|.+.+ .+.+.|...++..
T Consensus 84 g~~~~~-----~---~~l~~~~~~---~~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 84 GPVLVK-----Q---GDMAAILTS---LERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp TTTCCS-----H---HHHHHHHHH---CCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC-----------
T ss_pred chHhcC-----H---HHHHHHHHH---ccCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCcccccc
Confidence 322211 1 122233222 22456999999999873 2344444443321
Q ss_pred -----CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccc
Q 002068 384 -----ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (973)
Q Consensus 384 -----~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~ 457 (973)
.+.+|++|+... .+++++++||. .+.++.|+.+++.+|++..... .++.++++++..++..+.
T Consensus 145 ~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~-- 213 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSR-- 213 (334)
T ss_dssp ----CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTST--
T ss_pred cccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcC--
Confidence 367888888775 68999999997 5789999999999999887763 467899999999988774
Q ss_pred cCCCCCchHHHHHHHHHHhhhh
Q 002068 458 ISGRFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 458 i~~r~~p~~a~~lld~a~~~~~ 479 (973)
..|..+.++++.+...+.
T Consensus 214 ----G~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 214 ----GTPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp ----TCHHHHHHHHHHHHHHHH
T ss_pred ----CChHHHHHHHHHHHHHHH
Confidence 346688888887765543
No 119
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.53 E-value=6.8e-14 Score=154.89 Aligned_cols=185 Identities=20% Similarity=0.347 Sum_probs=132.7
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC--cceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~--~~~~~i~~~~~~~~~~~~ 725 (973)
+..++|++.+++.+...+.. . +. .++||+||||||||++|+.+++.+.+.. .+++.+++++........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~-------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVER-------K-NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTT-------T-CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS
T ss_pred HHHHhCCHHHHHHHHHHHhC-------C-CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH
Confidence 46799999998888666542 1 11 2599999999999999999999985432 357777776542111100
Q ss_pred hhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
..+..... ...+.||+|||+|.++++.++.|+..+++ ...+++||+++|
T Consensus 87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~ 140 (319)
T 2chq_A 87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCN 140 (319)
T ss_dssp ---------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSEEEEEEES
T ss_pred ---------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 11111211 24568999999999999999999999986 224678999988
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
. ...+.+.+.+|+ ..+.|+|++.+++..++...+.. . .+.
T Consensus 141 ~------------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~ 180 (319)
T 2chq_A 141 Y------------------------------VSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEK-------E--GVK 180 (319)
T ss_dssp C------------------------------GGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHT-------T--CCC
T ss_pred C------------------------------hhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHH-------c--CCC
Confidence 6 234678899999 58999999999998888776632 3 356
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
++++++++|+.. +.++ .|.+.+.++..
T Consensus 181 i~~~~l~~l~~~-~~G~--~r~~~~~l~~~ 207 (319)
T 2chq_A 181 ITEDGLEALIYI-SGGD--FRKAINALQGA 207 (319)
T ss_dssp BCHHHHHHHHHT-TTTC--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-cCCC--HHHHHHHHHHH
Confidence 899999999974 4443 66666666553
No 120
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1e-13 Score=153.98 Aligned_cols=184 Identities=21% Similarity=0.378 Sum_probs=131.7
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCC--cceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~--~~~~~i~~~~~~~~~~~~ 725 (973)
+..++|++++++.+...+... ++ .++||+||||||||++|+++++.+.+.. ..++.+++++........
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR 94 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred HHHhhCCHHHHHHHHHHHHcC--------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH
Confidence 467999999999998877642 11 2699999999999999999999985432 346677766532211111
Q ss_pred hhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
. .+..... ...+.||+|||+|.++++.++.|+..++.. ..+++||+++|
T Consensus 95 ~---------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~~~ 148 (327)
T 1iqp_A 95 E---------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCN 148 (327)
T ss_dssp H---------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEES
T ss_pred H---------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEEeC
Confidence 0 1111111 245689999999999999999999999862 24678888888
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
. ...+.+.+.+|+ ..+.|+|++.+++..++...+. .. .+.
T Consensus 149 ~------------------------------~~~l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~-------~~--~~~ 188 (327)
T 1iqp_A 149 Y------------------------------SSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAE-------NE--GLE 188 (327)
T ss_dssp C------------------------------GGGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHH-------TT--TCE
T ss_pred C------------------------------ccccCHHHHhhC-cEEEecCCCHHHHHHHHHHHHH-------hc--CCC
Confidence 6 223567888999 4899999999999988877653 23 356
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
++++++++|+... .+ +.|.+.+.++.
T Consensus 189 ~~~~~~~~l~~~~-~g--~~r~~~~~l~~ 214 (327)
T 1iqp_A 189 LTEEGLQAILYIA-EG--DMRRAINILQA 214 (327)
T ss_dssp ECHHHHHHHHHHH-TT--CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC-CC--CHHHHHHHHHH
Confidence 8999999999853 32 35666666554
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.52 E-value=6e-14 Score=151.96 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=127.6
Q ss_pred CCCCCchHHHHHHHH-------Hhc---cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc
Q 002068 255 DPVIGRDDEIRRCIQ-------ILS---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~-------~l~---~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~ 324 (973)
+.++|++..++.++. .+. .....++||+||||||||++|+++++.+ +.+++.+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhc
Confidence 357788776666655 232 4556789999999999999999999997 78899998876544
Q ss_pred cccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC--chhhHHHHHhhhhc-----CCCEEEEEccCchHHH
Q 002068 325 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN--GAMDAGNLLKPMLG-----RGELRCIGATTLDEYR 397 (973)
Q Consensus 325 g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~--~~~~~~~~L~~~l~-----~g~i~iI~at~~~~~~ 397 (973)
|. ..+.....+..++..+.. ..++||||||+|.+.+..... ....+.+.|...++ ...+++|++||.++.
T Consensus 103 g~-~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~- 179 (272)
T 1d2n_A 103 GF-SETAKCQAMKKIFDDAYK-SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV- 179 (272)
T ss_dssp TC-CHHHHHHHHHHHHHHHHT-SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH-
T ss_pred CC-chHHHHHHHHHHHHHHHh-cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh-
Confidence 32 223344566777777654 357899999999997543322 23445666666665 235778999998863
Q ss_pred hhhccCH-HHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHH
Q 002068 398 KYIEKDP-ALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (973)
Q Consensus 398 ~~~~~d~-al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~ 475 (973)
+++ .+.+||. .|.+++++. +.+|...+.. ...++++.+..++..+.+|-.... ..+++++++.+.
T Consensus 180 ----l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~------~~~~~~~~~~~l~~~~~g~~~~g~-ir~l~~~l~~a~ 246 (272)
T 1d2n_A 180 ----LQEMEMLNAFSTTIHVPNIAT--GEQLLEALEL------LGNFKDKERTTIAQQVKGKKVWIG-IKKLLMLIEMSL 246 (272)
T ss_dssp ----HHHTTCTTTSSEEEECCCEEE--HHHHHHHHHH------HTCSCHHHHHHHHHHHTTSEEEEC-HHHHHHHHHHHT
T ss_pred ----cchhhhhcccceEEcCCCccH--HHHHHHHHHh------cCCCCHHHHHHHHHHhcCCCcccc-HHHHHHHHHHHh
Confidence 445 6778985 566655443 3333332222 124689999999998876532111 224556665554
Q ss_pred h
Q 002068 476 A 476 (973)
Q Consensus 476 ~ 476 (973)
.
T Consensus 247 ~ 247 (272)
T 1d2n_A 247 Q 247 (272)
T ss_dssp T
T ss_pred h
Confidence 3
No 122
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.52 E-value=1.4e-13 Score=148.42 Aligned_cols=182 Identities=19% Similarity=0.183 Sum_probs=115.7
Q ss_pred CCCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc---c
Q 002068 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---K 327 (973)
Q Consensus 253 ~l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~---~ 327 (973)
+|+.++|++..++++++.+.+ ....++||+||||||||++|+++++.+... +.+++.++++.+.... .
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 688899999999988876643 456789999999999999999999876322 4689999988753110 0
Q ss_pred ----ccchHHHHH---HHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEE
Q 002068 328 ----YRGEFEDRL---KAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRC 387 (973)
Q Consensus 328 ----~~g~~e~~l---~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~i 387 (973)
..|.+.... ...+.. ..+++|||||++.+. .+.++.|..+++.+ ++++
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~----a~~~~l~lDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i 144 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFER----ADGGTLFLDELATAP--------MMVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (265)
T ss_dssp HHCCC---------CCCCHHHH----TTTSEEEEESGGGSC--------HHHHHHHHHHHHHCEECCCCC--CEECCCEE
T ss_pred hcCCcccccccccccccchhhh----cCCcEEEEechHhcC--------HHHHHHHHHHHHhCCeecCCCcccccCCeEE
Confidence 001000000 011111 235699999999997 45667777777643 5789
Q ss_pred EEccCchHHHh--hhccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhcCC----ccCHHHHHHHHHh
Q 002068 388 IGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHGV----RISDSALVEAAIL 453 (973)
Q Consensus 388 I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~----e~~~il~~~~~~~~~~~~v----~i~~~~l~~l~~~ 453 (973)
|++||.+.... .-.+++.|.+||..+.+..|+.. +...+++.++..+....+. .++++++..+..+
T Consensus 145 I~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 145 VCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp EEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred EEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 99999854221 12367999999976666666554 4455555555554444443 6889988877654
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.52 E-value=1.3e-13 Score=156.86 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=73.5
Q ss_pred CeEEEEccccccccCCCC-Cc---hhhHHHHHhhhhcC------------CCEEEEEcc-----CchHHHhhhccCHHHH
Q 002068 349 QIILFIDEIHTVVGAGAT-NG---AMDAGNLLKPMLGR------------GELRCIGAT-----TLDEYRKYIEKDPALE 407 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~-~~---~~~~~~~L~~~l~~------------g~i~iI~at-----~~~~~~~~~~~d~al~ 407 (973)
++|||+||+|.+...+.+ .+ ...+++.|+++++. .++.+|+++ ++. .+.|+|.
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipel~ 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPELQ 324 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHHHH
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchHHh
Confidence 459999999999865332 11 12256688888863 467899887 443 3559999
Q ss_pred ccCce-EEecCCCHHHHHHHHH----HHHHHHhhh-----cCCccCHHHHHHHHHhcc
Q 002068 408 RRFQQ-VYVDQPNVEDTISILR----GLRERYELH-----HGVRISDSALVEAAILSD 455 (973)
Q Consensus 408 ~Rf~~-i~~~~p~~~e~~~il~----~~~~~~~~~-----~~v~i~~~~l~~l~~~s~ 455 (973)
+||.. |.++.++.++..+|+. .+.++|... ..+.++++++..+++.+.
T Consensus 325 ~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 325 GRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred cccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 99985 8999999999999993 355555432 245799999999998754
No 124
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.52 E-value=6.8e-14 Score=153.70 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=123.6
Q ss_pred CCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc--------
Q 002068 255 DPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------- 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------- 324 (973)
++++|++..++.+.+.+.+ ....++||+||||||||++|++++..... .+.+++.++|+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-------~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR-------SDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC-------SSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc-------cCCCeEEEeCCCCChHHHHHHhc
Confidence 3589999999999887754 56678999999999999999999997632 256788999876531
Q ss_pred cc---cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEE
Q 002068 325 GA---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 388 (973)
Q Consensus 325 g~---~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI 388 (973)
|. .+.|.... ....+..+ .+++||||||+.+. .+.++.|..+++.+ ++++|
T Consensus 75 g~~~g~~tg~~~~-~~g~~~~a----~~g~L~LDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 75 GHEKGAFTGADKR-REGRFVEA----DGGTLFLDEIGDIS--------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp CCCSSCCC---CC-CCCHHHHH----TTSEEEEESCTTCC--------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred CccccccCchhhh-hcCHHHhc----CCCEEEEeccccCC--------HHHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 11 01111110 11223322 34699999999997 45677777877654 48999
Q ss_pred EccCchHHHh--hhccCHHHHccCceEEecCCCH----HHHHHHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 389 GATTLDEYRK--YIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 389 ~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~----~e~~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
++||.+.... --.+++.|.+||..+.+..|+. ++...+++.++.++...++ ..++++++..+..++
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred EecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 9999863221 1135789999998666666654 5556677777766554433 578999999888765
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=2.1e-13 Score=155.17 Aligned_cols=215 Identities=19% Similarity=0.205 Sum_probs=143.9
Q ss_pred CCCCCCchHHHHHHHHHhcc----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc---
Q 002068 254 LDPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 326 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~--- 326 (973)
.+.++|++.+++.+...+.. ....+++|+||||||||++++.+++.+.... +....+..++.+++.......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-SSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-HHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-hccCCCeEEEEEECCcCCCHHHHH
Confidence 36799999999999998743 4567899999999999999999999874310 000015678888876532110
Q ss_pred -----------cccch-HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc----CCCEEEEEc
Q 002068 327 -----------KYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RGELRCIGA 390 (973)
Q Consensus 327 -----------~~~g~-~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~----~g~i~iI~a 390 (973)
...|. ....+..++..+...+.++||||||+|.+.... ...+....|....+ ..++.+|++
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEEEE
Confidence 01121 222233444444333447899999999997441 01233333333333 567899999
Q ss_pred cCchHHHhhhccCHHHHccC--ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHH
Q 002068 391 TTLDEYRKYIEKDPALERRF--QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf--~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~ 468 (973)
||..++.. .+++.+.+|| ..+.|++|+.++..+|++..+... ..+..+++++++.++..+.+. ...|..+.
T Consensus 174 t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~ 246 (387)
T 2v1u_A 174 TNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDARRAL 246 (387)
T ss_dssp CSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCHHHHH
T ss_pred ECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCHHHHH
Confidence 99875422 5689999999 468999999999999998777531 235678999999999888632 23466788
Q ss_pred HHHHHHHhhhh
Q 002068 469 DLVDEAAAKLK 479 (973)
Q Consensus 469 ~lld~a~~~~~ 479 (973)
+++..++..+.
T Consensus 247 ~~l~~a~~~a~ 257 (387)
T 2v1u_A 247 DLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888875543
No 126
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.51 E-value=1.7e-13 Score=148.86 Aligned_cols=199 Identities=25% Similarity=0.359 Sum_probs=133.3
Q ss_pred cCCCCCCCCchHHHHHHHHHhcc------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+-+|++++|.++....+.++... ..+.+++|+||||||||+++++++..+ +..++.++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~ 105 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 105 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEec
Confidence 34688899998765555443211 224468999999999999999999987 46788888
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC---ch---hhHHHHHhhhhc----CCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~g~i~iI 388 (973)
...+.. .+.+.....+..+|..+.. ..++++|+||++.+....... .. ....+.+...++ ...+.++
T Consensus 106 ~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 106 GSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp HHHHHH--STTTHHHHHHHHHHHHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 766542 2456666777788887753 347899999999886443211 11 122223333333 2247788
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHH-HHHHHHhcccccCCCCCc
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLP 464 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~-l~~l~~~s~~~i~~r~~p 464 (973)
++|+.++ .+|+++.| ||+ .|.|+.|+.+++.+||+.+.. +..+++++ +..++..+.+|. +
T Consensus 183 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~ 246 (278)
T 1iy2_A 183 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----G 246 (278)
T ss_dssp EEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----H
T ss_pred EecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc------cCCCCcccCHHHHHHHcCCCC-----H
Confidence 8888886 58999998 787 689999999999999986654 23344333 566676666543 3
Q ss_pred hHHHHHHHHHHhhh
Q 002068 465 DKAIDLVDEAAAKL 478 (973)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (973)
.....+++.|+..+
T Consensus 247 ~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 247 ADLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35556777776544
No 127
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=5.2e-14 Score=158.30 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=132.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC---CCcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN---TEEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~---~~~~~~~i~~~~~~~~~~~ 724 (973)
+..++|++++++.+...+... ++ .++||+||||||||++|+++++.+.+ ....++.+++++......+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA--------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV 106 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT--------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcC--------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH
Confidence 577999999999887776421 11 25999999999999999999998742 1345777777664221111
Q ss_pred hhhcCCC-CCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh
Q 002068 725 SRLIGAP-PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (973)
Q Consensus 725 ~~l~G~~-~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 803 (973)
...+... ..... ..............+.||||||+|.+++..++.|++.+++. ..++.||+++|.
T Consensus 107 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-----------~~~~~~il~~~~-- 172 (353)
T 1sxj_D 107 REKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-----------SGVTRFCLICNY-- 172 (353)
T ss_dssp TTHHHHHHHSCCC-CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESC--
T ss_pred HHHHHHHhhhccc-ccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-----------CCCceEEEEeCc--
Confidence 1110000 00000 00000000111234579999999999999999999999863 135678888876
Q ss_pred hhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCH
Q 002068 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTD 883 (973)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~ 883 (973)
...+.|.+.+|+ ..+.|+|++.+++..++...+.. . .+.+++
T Consensus 173 ----------------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~i~~ 214 (353)
T 1sxj_D 173 ----------------------------VTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQ-------E--NVKCDD 214 (353)
T ss_dssp ----------------------------GGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHT-------T--TCCCCH
T ss_pred ----------------------------hhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHH-------h--CCCCCH
Confidence 223567899999 48999999999999988876632 3 357899
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 884 AAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 884 ~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
+++++|++..+ ...|.+.+.++..
T Consensus 215 ~~l~~l~~~~~---G~~r~~~~~l~~~ 238 (353)
T 1sxj_D 215 GVLERILDISA---GDLRRGITLLQSA 238 (353)
T ss_dssp HHHHHHHHHTS---SCHHHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 99999999755 2366666666553
No 128
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.51 E-value=1.6e-15 Score=187.76 Aligned_cols=164 Identities=23% Similarity=0.395 Sum_probs=130.0
Q ss_pred CCCCCCCCchHHHHHHHHHhcc-------------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 252 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 252 ~~l~~iiG~~~~i~~li~~l~~-------------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-.+++++|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 3577889998888887776532 244678999999999999999999998 67788888
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCc------hhhHHHHHhhhhc----CCCEEEE
Q 002068 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG------AMDAGNLLKPMLG----RGELRCI 388 (973)
Q Consensus 319 ~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~------~~~~~~~L~~~l~----~g~i~iI 388 (973)
++.+. .+|.|+.+..+..+|..+... .++||||||+|.+...+.... ...+.+.|+..++ ..++.+|
T Consensus 544 ~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 544 GPELL--TMWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CSSST--TCCTTTSSHHHHHHHHHHHHH-CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred chHhh--hhhcCccHHHHHHHHHHHHhc-CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 88876 458899999999999998875 478999999999987654321 1234455555554 4578999
Q ss_pred EccCchHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHH
Q 002068 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRER 433 (973)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p~~~e~~~il~~~~~~ 433 (973)
+|||.++ .+|+++.| ||+ .|+|+.|+.+++.+||+..+.+
T Consensus 621 ~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred EecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 9999887 58999999 998 7899999999999999876653
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=6e-13 Score=151.42 Aligned_cols=217 Identities=17% Similarity=0.126 Sum_probs=144.3
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHhcc----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccC-CCeEEEEEc
Q 002068 245 LTAMASAGKLDPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM-NRKLISLDM 319 (973)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~li~~l~~----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~-~~~~~~l~~ 319 (973)
|...+.| ++++|++++++.+...+.. ..+.+++|+||||||||++|+.+++.+........-. +..++.+++
T Consensus 13 l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 13 IDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp TCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 4455666 6799999999988876643 3456789999999999999999999874320000001 567888887
Q ss_pred cccc-ccc---------------cccch-HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhH-HHHHhhhhc
Q 002068 320 GALI-AGA---------------KYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDA-GNLLKPMLG 381 (973)
Q Consensus 320 ~~~~-~g~---------------~~~g~-~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~-~~~L~~~l~ 381 (973)
.... ... ...|. ....+..++..+. ..+.||||||+|.+..... .+. ...|....
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~vlilDEi~~l~~~~~----~~~~l~~l~~~~- 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR--NIRAIIYLDEVDTLVKRRG----GDIVLYQLLRSD- 162 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS--SSCEEEEEETTHHHHHSTT----SHHHHHHHHTSS-
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc--cCCCEEEEECHHHhccCCC----CceeHHHHhcCC-
Confidence 6532 100 01111 1222333333332 2234999999999975421 223 33343333
Q ss_pred CCCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCC
Q 002068 382 RGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (973)
Q Consensus 382 ~g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~ 460 (973)
.++.+|++|+..++.. .+++.+.+||. .+.|++|+.++..+|++..+.. ...+..+++++++.+++.+.++.
T Consensus 163 -~~~~iI~~t~~~~~~~--~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~-- 235 (384)
T 2qby_B 163 -ANISVIMISNDINVRD--YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKEH-- 235 (384)
T ss_dssp -SCEEEEEECSSTTTTT--TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTTC--
T ss_pred -cceEEEEEECCCchHh--hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhcc--
Confidence 7899999999875322 57899999984 7999999999999999877652 12346789999999999886332
Q ss_pred CCCchHHHHHHHHHHhhhh
Q 002068 461 RFLPDKAIDLVDEAAAKLK 479 (973)
Q Consensus 461 r~~p~~a~~lld~a~~~~~ 479 (973)
..+..++++++.++..+.
T Consensus 236 -G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 236 -GDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp -CCHHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHHHhc
Confidence 345678888888876553
No 130
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.50 E-value=3.2e-14 Score=159.91 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=131.3
Q ss_pred hcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcC----CCCcc-------c---------
Q 002068 250 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG----DVPQA-------L--------- 309 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~----~~p~~-------l--------- 309 (973)
++..|++++|++..++.+...+......++||+||||||||++|+++++.+... ..|.. +
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 456788999999866655444444455689999999999999999999987320 01100 0
Q ss_pred ---CCCeEEEEEcccccccccccchHHHHHHHHHHHH--------HHhCCCeEEEEccccccccCCCCCchhhHHHHHhh
Q 002068 310 ---MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV--------TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKP 378 (973)
Q Consensus 310 ---~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~--------~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~ 378 (973)
.+.+++.+..+... ....|... +...+... .....++||||||+|.+. .+.++.|..
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~--------~~~~~~Ll~ 166 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSE--DRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE--------DHIVDLLLD 166 (350)
T ss_dssp EEEECCCEEEECTTCCH--HHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC--------HHHHHHHHH
T ss_pred cccCCCcccccCCCcch--hhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC--------HHHHHHHHH
Confidence 00123322211100 00011000 01111110 001136799999999987 456777877
Q ss_pred hhcCC---------------CEEEEEccCchHHHhhhccCHHHHccCce-EEecCC-CHHHHHHHHHHHHHH--------
Q 002068 379 MLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQQ-VYVDQP-NVEDTISILRGLRER-------- 433 (973)
Q Consensus 379 ~l~~g---------------~i~iI~at~~~~~~~~~~~d~al~~Rf~~-i~~~~p-~~~e~~~il~~~~~~-------- 433 (973)
.++.+ ++++|++||..+. .++++|.+||.. +.++.| +.+++.+|++.....
T Consensus 167 ~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~ 242 (350)
T 1g8p_A 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFL 242 (350)
T ss_dssp HHHHSEEEECCTTCCEEEECCEEEEEEECSCSC----CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhcCceEEEecceEEeeCCceEEEEEeCCCCC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhc
Confidence 77654 7899999997542 688999999984 899999 566776888653110
Q ss_pred -----------------HhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhh
Q 002068 434 -----------------YELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKM 480 (973)
Q Consensus 434 -----------------~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~ 480 (973)
.....++.++++++..++.++.+.-. .-+..+..+++.|...+..
T Consensus 243 ~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--~~~R~~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 243 EEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--DGLRGELTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--CSHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHHHH
Confidence 01223568999999999888764321 1345677777777665544
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=2.7e-13 Score=154.37 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=141.2
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC--------CcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--------EEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~--------~~~~~~i~~~~~~ 719 (973)
...++|++..++.+...+..+..+. .| .+++|+||||||||++|+.+++.+... +.+++.++|....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~----~~-~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNE----VK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTC----CC-CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCC----CC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence 4789999999999999888765432 12 279999999999999999999987432 5678999998764
Q ss_pred -chhh-----hhhhcCCCCCcccccccc---hhhHHHHhCCCeEEEEccccccCHH-HHHH-HHHhhcCCeEecCCCcEE
Q 002068 720 -EKHA-----VSRLIGAPPGYVGYEEGG---QLTEVVRRRPYAVILFDEIEKAHSD-VFNV-FLQILDDGRVTDSQGRTV 788 (973)
Q Consensus 720 -~~~~-----~~~l~G~~~g~~g~~~~~---~l~~~~~~~~~~Vl~lDEid~l~~~-v~~~-Ll~~le~g~~~~~~g~~v 788 (973)
.... ...+.|...+..+..... .+...+...+ .||||||+|.+... .++. +..+++..
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~---------- 162 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD---------- 162 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS----------
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC----------
Confidence 3221 233445554444432221 2222333333 39999999998654 2444 44444431
Q ss_pred eccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHH
Q 002068 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRV 868 (973)
Q Consensus 789 ~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~ 868 (973)
.++.||+|||... +...+.+.+.+||...+.|+||+.+++.+++...+..
T Consensus 163 --~~~~iI~~t~~~~---------------------------~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~- 212 (384)
T 2qby_B 163 --ANISVIMISNDIN---------------------------VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY- 212 (384)
T ss_dssp --SCEEEEEECSSTT---------------------------TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-
T ss_pred --cceEEEEEECCCc---------------------------hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-
Confidence 4678999998621 0133677888998779999999999999999987742
Q ss_pred HHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 869 QKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 869 ~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.-....+++++++.+++..+......|.+.+.++..
T Consensus 213 ------~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 213 ------GLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp ------TSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ------hcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 101246889999998886542223356555555543
No 132
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.48 E-value=2.3e-13 Score=157.97 Aligned_cols=197 Identities=21% Similarity=0.365 Sum_probs=133.6
Q ss_pred hccccccchHHHHHHHHHHHHHHcc--CCC--CCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRSRAG--LSD--PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 722 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~~~~--~~~--~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~ 722 (973)
-++.|+|+++++..+.+.+...... +.. ..-|. .+||+||||||||+||++||..+ ..+++.++++++.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM- 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh-
Confidence 3578999999999998887654321 000 11233 49999999999999999999998 578999999887542
Q ss_pred hhhhhcCCCCCcccccccchhhHHHHh---CCCeEEEEccccccCH--------------HHHHHHHHhhcCCeEecCCC
Q 002068 723 AVSRLIGAPPGYVGYEEGGQLTEVVRR---RPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQG 785 (973)
Q Consensus 723 ~~~~l~G~~~g~~g~~~~~~l~~~~~~---~~~~Vl~lDEid~l~~--------------~v~~~Ll~~le~g~~~~~~g 785 (973)
++|... ..+...+.. ..++|+||||||.+.. ..++.|+..|+.+.
T Consensus 104 -----------~~g~~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~------ 165 (499)
T 2dhr_A 104 -----------FVGVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 165 (499)
T ss_dssp -----------CTTHHH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC------
T ss_pred -----------hhhhHH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc------
Confidence 122110 122223332 3458999999998742 45677887777543
Q ss_pred cEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHH
Q 002068 786 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 786 ~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
.-..+++|++||. ...++|++++ |||..|.+++++.++..+|++.
T Consensus 166 ---~~~~viviAatn~------------------------------p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 166 ---KDTAIVVMAATNR------------------------------PDILDPALLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp ---SSCCCEEEECCSC------------------------------GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred ---cCccEEEEEecCC------------------------------hhhcCcccccccccceEEecCCCCHHHHHHHHHH
Confidence 1135688999987 2235677775 8999999999999999998875
Q ss_pred HHHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHH
Q 002068 864 QLDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVE 912 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~ 912 (973)
++ .+ +.+++++ +..|+. .|+++ ..|+|+++++++..
T Consensus 213 ~~---------~~--~~l~~dv~l~~lA~-~t~G~-~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 213 HA---------RG--KPLAEDVDLALLAK-RTPGF-VGADLENLLNEAAL 249 (499)
T ss_dssp TT---------SS--SCCCCSSTTHHHHT-TSCSC-CHHHHHHHHHHHHH
T ss_pred HH---------hc--CCCChHHHHHHHHH-hcCCC-CHHHHHHHHHHHHH
Confidence 44 12 3445554 555655 46554 34788888887543
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.48 E-value=3.2e-13 Score=142.79 Aligned_cols=198 Identities=14% Similarity=0.078 Sum_probs=132.9
Q ss_pred HHhc-CCCCCCCCc---hHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc
Q 002068 248 MASA-GKLDPVIGR---DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (973)
Q Consensus 248 ~~~~-~~l~~iiG~---~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 323 (973)
.+++ .+|++++|. ...++.+...+......+++|+||||||||++|+.+++.+... +.+++.+++..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~ 92 (242)
T 3bos_A 20 HLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHA 92 (242)
T ss_dssp CCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGG
T ss_pred CCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHH
Confidence 3444 578889973 3556666665555567789999999999999999999998443 4678888877664
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccC
Q 002068 324 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKD 403 (973)
Q Consensus 324 ~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d 403 (973)
.... ..+..+ ..+.+|||||+|.+..... .......++....+.+.+.+|.+|+... ......+
T Consensus 93 ~~~~----------~~~~~~---~~~~vliiDe~~~~~~~~~--~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~~~~~~ 156 (242)
T 3bos_A 93 SIST----------ALLEGL---EQFDLICIDDVDAVAGHPL--WEEAIFDLYNRVAEQKRGSLIVSASASP-MEAGFVL 156 (242)
T ss_dssp GSCG----------GGGTTG---GGSSEEEEETGGGGTTCHH--HHHHHHHHHHHHHHHCSCEEEEEESSCT-TTTTCCC
T ss_pred HHHH----------HHHHhc---cCCCEEEEeccccccCCHH--HHHHHHHHHHHHHHcCCCeEEEEcCCCH-HHHHHhh
Confidence 3211 111111 2456999999999864310 0122333444444566664555555332 1112356
Q ss_pred HHHHccC---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhh
Q 002068 404 PALERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 404 ~al~~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~ 478 (973)
+.+.+|| ..+.++.|+.+++.+++...+.. .++.++++++..++..+.+ .+..+..+++.++..+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMAR------DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTT------CHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccC------CHHHHHHHHHHHHHHH
Confidence 9999999 68999999999999999887763 5678999999999887753 3456777777776654
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.3e-12 Score=148.95 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=144.1
Q ss_pred CCCCCchHHHHHHHHHhcc----CCCC--CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccc-
Q 002068 255 DPVIGRDDEIRRCIQILSR----RTKN--NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK- 327 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~----~~~~--~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~- 327 (973)
++++||+.+++++...+.. ..+. +++|+||||||||++++.+++.+.... +..++.+++........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 6799999999999888755 3334 789999999999999999999883321 46788888655321100
Q ss_pred -------------ccc-hHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC------CCEEE
Q 002068 328 -------------YRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR------GELRC 387 (973)
Q Consensus 328 -------------~~g-~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~------g~i~i 387 (973)
..| .....+..+...+...+++.||||||+|.+. .+..+.|..+++. .++.+
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------PDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------HHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------hHHHHHHHHHHHhCCCCCcCCEEE
Confidence 011 1222223333333334557899999999983 4556666666642 58999
Q ss_pred EEccCchHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC---CCC
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS---GRF 462 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~---~r~ 462 (973)
|++|+..++.. .+++.+.+||. .+.|++++.++..++++..+.... ....++++++..++..+.+... ...
T Consensus 163 I~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 163 VIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp EEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred EEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 99988876443 46899999986 589999999999999987776321 2347899999999998853311 023
Q ss_pred CchHHHHHHHHHHhhh
Q 002068 463 LPDKAIDLVDEAAAKL 478 (973)
Q Consensus 463 ~p~~a~~lld~a~~~~ 478 (973)
.|..+++++..++..+
T Consensus 239 ~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 239 DARLAIDILYRSAYAA 254 (389)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5678888888877654
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=5.6e-13 Score=140.73 Aligned_cols=198 Identities=19% Similarity=0.291 Sum_probs=128.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh--
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-- 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~-- 725 (973)
+..++|++..++.+...+.... .| ..++|+||+|||||++++.+++.+.... ......|..........
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-------~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 92 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-------IH-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQG 92 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-------CC-SEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-------CC-eEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhcc
Confidence 4679999999999988886421 11 2699999999999999999999884321 12212222111100000
Q ss_pred ---hhcCCCCCcccccccchhhHHHHh-------CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEE
Q 002068 726 ---RLIGAPPGYVGYEEGGQLTEVVRR-------RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (973)
Q Consensus 726 ---~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~ii 795 (973)
.+++.... +......+...+.. ..+.||+|||+|.+++..++.|+..++.. ..++++
T Consensus 93 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~ 159 (250)
T 1njg_A 93 RFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKF 159 (250)
T ss_dssp CCSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEEE
T ss_pred CCcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceEE
Confidence 00000000 00000122233332 23579999999999999999999999852 246788
Q ss_pred EEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 002068 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADR 875 (973)
Q Consensus 796 I~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~ 875 (973)
|++||. ...+.+.+.+|+ ..+.|+|++.+++.+++...+.. .
T Consensus 160 i~~t~~------------------------------~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-------~ 201 (250)
T 1njg_A 160 LLATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------E 201 (250)
T ss_dssp EEEESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------T
T ss_pred EEEeCC------------------------------hHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-------c
Confidence 888886 223566788887 78999999999999998877643 3
Q ss_pred CCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 876 KMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 876 ~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.+.+++++++.|++.. .+ ..|.+.+.++++
T Consensus 202 --~~~~~~~~~~~l~~~~-~G--~~~~~~~~~~~~ 231 (250)
T 1njg_A 202 --HIAHEPRALQLLARAA-EG--SLRDALSLTDQA 231 (250)
T ss_dssp --TCCBCHHHHHHHHHHH-TT--CHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHc-CC--CHHHHHHHHHHH
Confidence 3578999999999863 22 356666665553
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=9.3e-13 Score=149.63 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=144.1
Q ss_pred CCCCCCchHHHHHHHHHhcc----CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc----
Q 002068 254 LDPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG---- 325 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~----~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g---- 325 (973)
.+.++||+.+++.+.+.+.. ....+++|+||||||||++++.+++.+..... .+..++.+++......
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL----GKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC----SSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CCceEEEEECCCCCCHHHHH
Confidence 36799999999999998763 44568899999999999999999998743210 0467888886532110
Q ss_pred ----------ccccch-HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhh---cCCCEEEEEcc
Q 002068 326 ----------AKYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML---GRGELRCIGAT 391 (973)
Q Consensus 326 ----------~~~~g~-~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l---~~g~i~iI~at 391 (973)
....|. ....+..++..+...+.++||||||+|.+..... .+....|...+ ...++.+|++|
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhcCCCeEEEEEEE
Confidence 001121 2233444444444434488999999999985421 23444444445 45689999999
Q ss_pred CchHHHhhhccCHHHHccC--ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHH
Q 002068 392 TLDEYRKYIEKDPALERRF--QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (973)
Q Consensus 392 ~~~~~~~~~~~d~al~~Rf--~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~ 469 (973)
+..++.. .+++.+.+|| ..+.+++++.++..++++..+... .....++++++..++.++... ...|..+++
T Consensus 171 ~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~ 243 (386)
T 2qby_A 171 NDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAARE---HGDARRALD 243 (386)
T ss_dssp SCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHT---TCCHHHHHH
T ss_pred CCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---cCCHHHHHH
Confidence 9876432 4678899999 479999999999999998766531 224678999999999888621 234667888
Q ss_pred HHHHHHhhhh
Q 002068 470 LVDEAAAKLK 479 (973)
Q Consensus 470 lld~a~~~~~ 479 (973)
+++.++..+.
T Consensus 244 ll~~a~~~a~ 253 (386)
T 2qby_A 244 LLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765443
No 137
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.47 E-value=2.5e-13 Score=151.05 Aligned_cols=172 Identities=14% Similarity=0.206 Sum_probs=120.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||++|+++++.+...+.+++.++|.++...... .+.. .....+..... ..+|||||||
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~--------~~~~~~~~~~~--~~~vL~iDEi 107 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVE-HLKK--------GTINEFRNMYK--SVDLLLLDDV 107 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHH-HHHH--------TCHHHHHHHHH--TCSEEEEECG
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-HHHc--------CcHHHHHHHhc--CCCEEEEcCc
Confidence 69999999999999999999998655678999999877432111 0000 00012222232 2579999999
Q ss_pred cccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
+.++. ..++.|+.+++.-. -.+..+|+|++..+..+ ..+.+.
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~----------~~~~~iii~~~~~~~~l--------------------------~~l~~~ 151 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLY----------LLEKQIILASDRHPQKL--------------------------DGVSDR 151 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH----------HTTCEEEEEESSCGGGC--------------------------TTSCHH
T ss_pred ccccCChHHHHHHHHHHHHHH----------HCCCeEEEEecCChHHH--------------------------HHhhhH
Confidence 99986 77888888875310 01234555665433221 136788
Q ss_pred hhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 839 FMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 839 ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
|++||+ .++.|+| +.+++..|+...+.. . .+.++++++++|+.+. .++|.+...+++++..
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~-------~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKE-------F--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHH-------T--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 999996 6899999 999999999887743 3 3578999999999975 3489988888876654
No 138
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.46 E-value=6.1e-13 Score=147.85 Aligned_cols=199 Identities=11% Similarity=0.125 Sum_probs=128.0
Q ss_pred CCCCCCC-Cch--HHHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc
Q 002068 252 GKLDPVI-GRD--DEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (973)
Q Consensus 252 ~~l~~ii-G~~--~~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 326 (973)
.+|++++ |+. .....+...+... ..++++|+||||||||++++++++.+... +.+++.+++..+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~-- 78 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQ-- 78 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHH--
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHH--
Confidence 3678887 543 3344444444333 34688999999999999999999988443 56788888766532
Q ss_pred cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHH
Q 002068 327 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 406 (973)
Q Consensus 327 ~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al 406 (973)
.+.+.........+.... ..+.||||||+|.+.+.. .....+...+....+.+..++|++++... ....++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L 152 (324)
T 1l8q_A 79 AMVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRL 152 (324)
T ss_dssp HHHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHH
T ss_pred HHHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHh
Confidence 122222111111122221 235699999999987421 11233444555555666666666655443 112578999
Q ss_pred HccC---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh
Q 002068 407 ERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 407 ~~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~ 477 (973)
.+|| ..+.+++ +.+++.+|++..+.. .++.++++++..++..+ +.+ .....+++.++..
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 9999 4688988 999999999887763 57889999999998887 432 3455566655543
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.45 E-value=4.2e-12 Score=171.59 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=89.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEI 357 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi 357 (973)
+..+.||+|||||.+++.+|+.+ |..++.++|+.-..- ..+..+|..+... +...++||+
T Consensus 606 gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d~--------~~~g~i~~G~~~~--GaW~cfDEf 665 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFDL--------QAMSRIFVGLCQC--GAWGCFDEF 665 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCCH--------HHHHHHHHHHHHH--TCEEEEETT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCCH--------HHHHHHHhhHhhc--CcEEEehhh
Confidence 45789999999999999999999 999999999765421 2355667777654 458899999
Q ss_pred cccccCCCCCchhhHHHHHhhhh----------------cCC-------CEEEEEccCchHHHhhhccCHHHHccCceEE
Q 002068 358 HTVVGAGATNGAMDAGNLLKPML----------------GRG-------ELRCIGATTLDEYRKYIEKDPALERRFQQVY 414 (973)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~L~~~l----------------~~g-------~i~iI~at~~~~~~~~~~~d~al~~Rf~~i~ 414 (973)
+++.. ++..++.+.+ +.| ...++.|+|+ .|....+++..+++||..|.
T Consensus 666 Nrl~~--------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lFr~v~ 736 (3245)
T 3vkg_A 666 NRLEE--------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLFRSMA 736 (3245)
T ss_dssp TSSCH--------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTEEEEE
T ss_pred hcCCH--------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhcEEEE
Confidence 99862 2222221111 113 4567777776 68777799999999999999
Q ss_pred ecCCCHHHHHHHH
Q 002068 415 VDQPNVEDTISIL 427 (973)
Q Consensus 415 ~~~p~~~e~~~il 427 (973)
+..|+.+...+|+
T Consensus 737 m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 737 MIKPDREMIAQVM 749 (3245)
T ss_dssp CCSCCHHHHHHHH
T ss_pred EeCCCHHHHHHHH
Confidence 9999998877764
No 140
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=7.8e-13 Score=146.57 Aligned_cols=185 Identities=11% Similarity=0.175 Sum_probs=132.1
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~ 725 (973)
+..++|++.+++.+...+.. .++. +++|+||||+|||++|+.+++.+.+. ..+++.+++++......+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 90 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKD--------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVR 90 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHS--------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHc--------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHH
Confidence 46799999999998887752 1122 49999999999999999999997432 2346777766532111111
Q ss_pred hhcCCCCCcccccccchhhHHHH-------hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEe
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 798 (973)
.+...+. ...+.||+|||+|.+....++.|++.+++. ..+++||++
T Consensus 91 ----------------~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~il~ 143 (323)
T 1sxj_B 91 ----------------NQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-----------SNSTRFAFA 143 (323)
T ss_dssp ----------------THHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-----------TTTEEEEEE
T ss_pred ----------------HHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-----------CCCceEEEE
Confidence 1111111 223679999999999999999999999862 246788888
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
||. ...+.+.+.+|+ ..+.|+|++.+++.+++...+.. .+
T Consensus 144 ~~~------------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~-- 183 (323)
T 1sxj_B 144 CNQ------------------------------SNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKL-------ED-- 183 (323)
T ss_dssp ESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--
T ss_pred eCC------------------------------hhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHH-------cC--
Confidence 876 234667889999 58999999999999998877643 23
Q ss_pred eecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 879 MQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 879 l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
+.+++++++.|++.. . ...|.+.+.++...
T Consensus 184 ~~~~~~~~~~l~~~~-~--G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 184 VKYTNDGLEAIIFTA-E--GDMRQAINNLQSTV 213 (323)
T ss_dssp CCBCHHHHHHHHHHH-T--TCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHHH
Confidence 468999999999863 2 23566666665543
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.44 E-value=6.9e-13 Score=143.34 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=137.0
Q ss_pred hccccccchHHHHHHHHHHHHH--------HccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 647 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 647 l~~~v~Gq~~~i~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
-|.+|.|.+++++.|.+.+... ..++..+ . .++|+||||||||+++++||..+ +.+++.+++.++
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~---~-GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l 80 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP---A-GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPEL 80 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC---S-EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC---C-eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHH
Confidence 4677888888888887765321 1233322 3 39999999999999999999988 457888888776
Q ss_pred cchhhhhhhcCCCCCccccc--ccchhhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHhhcCCeEecCCC
Q 002068 719 MEKHAVSRLIGAPPGYVGYE--EGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQG 785 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~--~~~~l~~~~~~~~~~Vl~lDEid~l~-----------~~v~~~Ll~~le~g~~~~~~g 785 (973)
... +.|.. ..+.++...+...++++|+||+|.+. ..+.+.++..|+.|.
T Consensus 81 ~~~------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~------ 142 (274)
T 2x8a_A 81 LNM------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE------ 142 (274)
T ss_dssp CSS------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC------
T ss_pred Hhh------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc------
Confidence 432 11111 01233444445567899999999753 235677788887653
Q ss_pred cEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHH
Q 002068 786 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 863 (973)
Q Consensus 786 ~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~ 863 (973)
....+++++++|. ...++|+++. |||..|.+++++.++..+|++.
T Consensus 143 ---~~~~~i~ia~tn~------------------------------p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 143 ---ARQQVFIMAATNR------------------------------PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp ---STTCEEEEEEESC------------------------------GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred ---ccCCEEEEeecCC------------------------------hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 1235778899987 3446788885 9999999999999999999987
Q ss_pred HHHHHHHHHHhcCCceecCHH-HHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002068 864 QLDRVQKRIADRKMKMQVTDA-AIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 920 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l 920 (973)
++.. +....++.+ -++.|+.......|....|..+++.+...++-+.+.
T Consensus 190 ~~~~--------~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 190 ITKN--------GTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp HTTT--------TBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhc--------ccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 6632 111222222 245566532223566788999998887777665443
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.44 E-value=1.6e-12 Score=147.30 Aligned_cols=200 Identities=21% Similarity=0.298 Sum_probs=131.9
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh--
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-- 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~-- 725 (973)
+..++|++.+++.+...+...+ ....+||+||+|||||++|+.+++.+.+.. +.....|..+..-....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~--------~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR--------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC--------CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHTS
T ss_pred hhhccCcHHHHHHHHHHHHhCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhcc
Confidence 4679999999999988886421 112589999999999999999999985422 12222232221100000
Q ss_pred ---hhcC-CCCCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEE
Q 002068 726 ---RLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (973)
Q Consensus 726 ---~l~G-~~~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 797 (973)
.++. ...+..+......+.+.+.. ..+.||+|||+|.++...++.|+..+++ ...++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~Il 154 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLL 154 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEEE
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEEE
Confidence 0000 00011111111223333332 2357999999999999999999999986 234678888
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM 877 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~ 877 (973)
+||. ...+.+.+.+|+ ..+.|+|++.+++.+++...+.. .|
T Consensus 155 ~~~~------------------------------~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-------~~- 195 (373)
T 1jr3_A 155 ATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH- 195 (373)
T ss_dssp EESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT-
T ss_pred EeCC------------------------------hHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-------cC-
Confidence 8875 223567888998 78999999999999998887643 23
Q ss_pred ceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 878 KMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 878 ~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
+.+++++++.|++.. . .+.|.+.+.+++.
T Consensus 196 -~~~~~~a~~~l~~~~-~--G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 196 -IAHEPRALQLLARAA-E--GSLRDALSLTDQA 224 (373)
T ss_dssp -CCBCHHHHHHHHHHS-S--SCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHC-C--CCHHHHHHHHHHH
Confidence 568999999999864 2 2366666666553
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.44 E-value=1.1e-12 Score=140.44 Aligned_cols=197 Identities=22% Similarity=0.362 Sum_probs=128.4
Q ss_pred ccccccchHHHHHHHHHHHHHHc-------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~-------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (973)
++.++|+++++..+.+....... ++. -|. .++|+||||||||+++++|+..+ ..+++.+++.++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~-g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE 87 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCS-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCC---CCC-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHH
Confidence 46788888887777666543221 122 223 49999999999999999999988 57788888876533
Q ss_pred hhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHhhcCCeEecCCCc
Q 002068 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 721 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
.. .|. . ....+.++.......++++++||||.+. ...++.++..|+.|.-
T Consensus 88 ~~-----~~~----~-~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~------ 151 (254)
T 1ixz_A 88 MF-----VGV----G-AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------ 151 (254)
T ss_dssp SC-----TTH----H-HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT------
T ss_pred HH-----hhH----H-HHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC------
Confidence 21 110 0 0001123333334456899999998763 1346677777775431
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
-..+++++++|. ...++|+++. ||+..|.|++++.++..+|++.+
T Consensus 152 ---~~~~i~~a~t~~------------------------------p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 152 ---DTAIVVMAATNR------------------------------PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp ---TCCEEEEEEESC------------------------------GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ---CCCEEEEEccCC------------------------------chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 134678888887 2336777876 89999999999999999998755
Q ss_pred HHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+ .+ +.+++++ +.+|+.. |++ +..|+|+.+++++...
T Consensus 199 ~---------~~--~~~~~~~~~~~la~~-~~G-~~~~dl~~~~~~a~~~ 235 (254)
T 1ixz_A 199 A---------RG--KPLAEDVDLALLAKR-TPG-FVGADLENLLNEAALL 235 (254)
T ss_dssp H---------TT--SCBCTTCCHHHHHHT-CTT-CCHHHHHHHHHHHHHH
T ss_pred H---------cC--CCCCcccCHHHHHHH-cCC-CCHHHHHHHHHHHHHH
Confidence 4 22 2344444 6667763 443 3457888888776543
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1.9e-12 Score=147.42 Aligned_cols=219 Identities=16% Similarity=0.226 Sum_probs=147.9
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC-CcceEEeccccccchhhh---
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYMEKHAV--- 724 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~~~~i~~~~~~~~~~~--- 724 (973)
..++|++..++.+...+.....+.. +..| +++|+||||||||++++.+++.+... +.+++.++|+........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~-~~~~--~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG-HHYP--RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT-SSCC--EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-CCCC--eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 6799999999999999887654421 1111 69999999999999999999998655 467899998876543221
Q ss_pred -hhhcCCCCCccccccc---chhhHHHHh-CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEec
Q 002068 725 -SRLIGAPPGYVGYEEG---GQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 799 (973)
Q Consensus 725 -~~l~G~~~g~~g~~~~---~~l~~~~~~-~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ts 799 (973)
...+|...+..+.... ..+...+.. ..+.||+|||++.+++..++.|+.+++...-. ...++.||+++
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~-------~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKL-------GAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHH-------SSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCC-------CcCCEEEEEEE
Confidence 2233433222221111 122223333 34679999999999999999999999752100 00367788888
Q ss_pred CCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002068 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQLDRVQKRIADRKMK 878 (973)
Q Consensus 800 N~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~ 878 (973)
|... +...+.+.+.+||.. .+.|+|++.+++.+++...+... +..
T Consensus 167 ~~~~---------------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-------~~~ 212 (389)
T 1fnn_A 167 HNDA---------------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-------LAE 212 (389)
T ss_dssp SSTH---------------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-------BCT
T ss_pred CCch---------------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-------cCC
Confidence 8621 123467778888865 89999999999999998876431 112
Q ss_pred eecCHHHHHHHHhcCCCC------CCCccHHHHHHHHHH
Q 002068 879 MQVTDAAIQLLGSLGYDP------NYGARPVKRVIQQYV 911 (973)
Q Consensus 879 l~~~~~a~~~L~~~~~~~------~~gaR~L~r~i~~~i 911 (973)
..+++++++.+++..|.. ....|.+...++...
T Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 213 GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 368999999999976522 233677766666544
No 145
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.41 E-value=4.2e-12 Score=141.54 Aligned_cols=177 Identities=12% Similarity=0.148 Sum_probs=114.8
Q ss_pred cccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc------hh--
Q 002068 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------KH-- 722 (973)
Q Consensus 651 v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~------~~-- 722 (973)
+.+|.++++.+...+... +....+||+||+|+|||++|+.+|+.+.+....- ...|..... ..
T Consensus 4 ~pw~~~~~~~l~~~i~~~--------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG--------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT--------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHHTCCT
T ss_pred CCchHHHHHHHHHHHHcC--------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcCCCC
Confidence 467788888888777632 1122599999999999999999999996532110 011111100 00
Q ss_pred hhhhhcCCC-CCcccccccchhhHHHHh----CCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEE
Q 002068 723 AVSRLIGAP-PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (973)
Q Consensus 723 ~~~~l~G~~-~g~~g~~~~~~l~~~~~~----~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~ 797 (973)
++..+.+.. ....+.+....+.+.+.. ..+.|++|||+|+++.+.++.|++.||+ ...+++||+
T Consensus 75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il 143 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFL 143 (334)
T ss_dssp TEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEE
T ss_pred CEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 000111100 011221111233333332 3468999999999999999999999997 235788888
Q ss_pred ecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 002068 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM 877 (973)
Q Consensus 798 tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~ 877 (973)
+||. ...+.|.+.+|+ ..+.|+|++.+++.+++....
T Consensus 144 ~t~~------------------------------~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~------------ 180 (334)
T 1a5t_A 144 ATRE------------------------------PERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV------------ 180 (334)
T ss_dssp EESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC------------
T ss_pred EeCC------------------------------hHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc------------
Confidence 8886 234678899999 689999999999988776532
Q ss_pred ceecCHHHHHHHHhc
Q 002068 878 KMQVTDAAIQLLGSL 892 (973)
Q Consensus 878 ~l~~~~~a~~~L~~~ 892 (973)
.+++++++.++..
T Consensus 181 --~~~~~~~~~l~~~ 193 (334)
T 1a5t_A 181 --TMSQDALLAALRL 193 (334)
T ss_dssp --CCCHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHH
Confidence 4567777777664
No 146
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.41 E-value=1.6e-12 Score=137.35 Aligned_cols=166 Identities=14% Similarity=0.212 Sum_probs=117.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||++|+.+++.+...+.+++.++++++.... .. ....+ ..++||||||+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~~--~~~~vliiDe~ 113 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--TA----------------LLEGL--EQFDLICIDDV 113 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--GG----------------GGTTG--GGSSEEEEETG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HH----------------HHHhc--cCCCEEEEecc
Confidence 799999999999999999999986656788888888764321 00 00111 23469999999
Q ss_pred cccCHHH--HHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChh
Q 002068 761 EKAHSDV--FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (973)
Q Consensus 761 d~l~~~v--~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ 838 (973)
+.+.... ++.|+.+++.-. ......+|+|+|.....+ ..+.+.
T Consensus 114 ~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~--------------------------~~~~~~ 158 (242)
T 3bos_A 114 DAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEA--------------------------GFVLPD 158 (242)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTT--------------------------TCCCHH
T ss_pred ccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHH--------------------------HHhhhh
Confidence 9997655 888888876411 111223667777533211 113467
Q ss_pred hhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 839 FMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 839 ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+.+|+. .++.|++++.+++.+++...+.. .+ +.++++++++|++. +.+ +.|.+.+.++++...
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~~~-~~g--~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAM-------RG--LQLPEDVGRFLLNR-MAR--DLRTLFDVLDRLDKA 223 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHH-------TT--CCCCHHHHHHHHHH-TTT--CHHHHHHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH-ccC--CHHHHHHHHHHHHHH
Confidence 888886 79999999999999999887742 33 57899999999985 443 478888888876544
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=5.8e-13 Score=151.45 Aligned_cols=219 Identities=15% Similarity=0.207 Sum_probs=140.8
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC------CcceEEeccccccch
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT------EEALVRIDMSEYMEK 721 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~------~~~~~~i~~~~~~~~ 721 (973)
...++|++..+..+...+.....+ ..+ .+++|+||||||||++|+.+++.+... +.+++.++|......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~----~~~-~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 92 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG----EKP-SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP 92 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS----CCC-CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCH
Confidence 467999999999988877543211 112 269999999999999999999988432 567899999876543
Q ss_pred hh----hhhhcCCCCCccccccc---chhhHHHHhC-CCeEEEEccccccCHH--HHHHHHHhhcCCeEecCCCcEEecc
Q 002068 722 HA----VSRLIGAPPGYVGYEEG---GQLTEVVRRR-PYAVILFDEIEKAHSD--VFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 722 ~~----~~~l~G~~~g~~g~~~~---~~l~~~~~~~-~~~Vl~lDEid~l~~~--v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
.. +...+|......|.... ..+...+... .+.||||||+|.+... .++.|+.+++...... ...
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~------~~~ 166 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG------DRV 166 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC------CCc
Confidence 22 11223443323332111 1222333322 3569999999999765 6677766665311000 023
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccce-EEEcCCCCHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQLDRVQK 870 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~-~i~f~~l~~~~l~~I~~~~l~~~~~ 870 (973)
++++|++||... +...+.+.+.+||.. .+.|+|++.+++.+|+...+...
T Consensus 167 ~~~~I~~t~~~~---------------------------~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-- 217 (387)
T 2v1u_A 167 WVSLVGITNSLG---------------------------FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA-- 217 (387)
T ss_dssp -CEEEEECSCST---------------------------TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--
T ss_pred eEEEEEEECCCc---------------------------hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--
Confidence 567889988621 012367788899975 89999999999999999877431
Q ss_pred HHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q 002068 871 RIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYV 911 (973)
Q Consensus 871 ~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i 911 (973)
.....++++++++++++.+......|.+.+.++.+.
T Consensus 218 -----~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 218 -----FNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp -----BCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred -----ccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 113468899999999875532333676666666543
No 148
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.40 E-value=1.4e-12 Score=150.81 Aligned_cols=206 Identities=15% Similarity=0.197 Sum_probs=131.0
Q ss_pred CCCCCC-CchH--HHHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccc
Q 002068 253 KLDPVI-GRDD--EIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 328 (973)
Q Consensus 253 ~l~~ii-G~~~--~i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~ 328 (973)
+|+.+| |+.. ....+..+..... .++++|+||||||||+|++++++.+.... .+.+++.+++..+.. .+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~~~~~~--~~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLN--DL 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEHHHHHH--HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHH--HH
Confidence 677777 6433 3333444433333 57889999999999999999999884421 256788888766531 11
Q ss_pred cchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHc
Q 002068 329 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 408 (973)
Q Consensus 329 ~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~ 408 (973)
.+.........+.... ...+.||||||+|.+.+.. .....+...+....+.+..++|++.+... ....+++.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~vL~IDEi~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~s 250 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKY-RKKVDILLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVS 250 (440)
T ss_dssp HHHHHTTCHHHHHHHH-TTTCSEEEEECGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHH
T ss_pred HHHHHcccHHHHHHHh-cCCCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHh
Confidence 1111111001111111 1146799999999997421 01123334444445666666665544332 11237899999
Q ss_pred cC---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhhhhh
Q 002068 409 RF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKM 480 (973)
Q Consensus 409 Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~~~~ 480 (973)
|| ..+.+++|+.+++.+|++..+.. .++.++++++..++..+.+ .+..+..+++.++..+..
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~g------n~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDD------NLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCS------CHHHHHHHHHHHHHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHH
Confidence 99 47899999999999999887763 5788999999999887753 345677778777766543
No 149
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.40 E-value=2.9e-12 Score=144.06 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=129.6
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHH-HHHhcCCCcceEEeccccc
Q 002068 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKAL-ASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 640 l~~l~~~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~l-a~~l~~~~~~~~~i~~~~~ 718 (973)
+..+.+.+.. |+||+.++..|.-++ .|.....+.-.|+||.|+||| ||++|+++ ++.+.+ ..+....++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L----~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQL----FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHH----TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHH----cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 3466677888 999998776665444 232211111127999999999 99999999 877622 11221111110
Q ss_pred cchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEe
Q 002068 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~t 798 (973)
.....+ +.+. .| .. .-.+.+..+.++|+|+|||+++++.+|..|+++|++|.++.. |. .-..++.||+|
T Consensus 277 -~gLt~s-~r~~-tG-~~-----~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 -TDLTAV-LKED-RG-WA-----LRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp -HHHSEE-EEES-SS-EE-----EEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred -cCceEE-EEcC-CC-cc-----cCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 000001 1111 11 11 123456677889999999999999999999999999999887 66 22348999999
Q ss_pred cCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC-HHH-H---HH-HHHHHHHHHHHHH
Q 002068 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQ-I---SS-IVRLQLDRVQKRI 872 (973)
Q Consensus 799 sN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~-~~~-l---~~-I~~~~l~~~~~~~ 872 (973)
+|+.. ... ... . + -.-.+++++++|||.++....+. .++ . .. +-...+.++....
T Consensus 346 ~NP~~-~yd------~~~-s--------~---~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~a 406 (506)
T 3f8t_A 346 INPGE-QWP------SDP-P--------I---ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYA 406 (506)
T ss_dssp ECCCC---C------CSC-G--------G---GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHH
T ss_pred eCccc-ccC------CCC-C--------c---cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHH
Confidence 99854 110 000 0 0 02358899999999876655443 221 1 11 1113333444444
Q ss_pred HhcCCceecCHHHHHHHHhc
Q 002068 873 ADRKMKMQVTDAAIQLLGSL 892 (973)
Q Consensus 873 ~~~~~~l~~~~~a~~~L~~~ 892 (973)
+...+.+.+++++.++|.++
T Consensus 407 r~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 407 IREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp HHHCSCCEECHHHHHHHHHH
T ss_pred HhcCCCceeCHHHHHHHHHH
Confidence 42445789999999998864
No 150
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.40 E-value=1.1e-11 Score=138.31 Aligned_cols=193 Identities=15% Similarity=0.298 Sum_probs=127.9
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (973)
..++||+.+++.+...+...... ..+..+++|+||||||||++|++|+..+ +.++......-+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~-------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVK-------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCS--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcC--------
Confidence 56889999999988887754321 1222379999999999999999999998 33443332221111
Q ss_pred CCCCCcccccccchhhHHHHh-CCCeEEEEccccccCHHHHHHHHHhhcCCeEe-----cCCCcE--EeccCEEEEEecC
Q 002068 729 GAPPGYVGYEEGGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVT-----DSQGRT--VSFTNTVIIMTSN 800 (973)
Q Consensus 729 G~~~g~~g~~~~~~l~~~~~~-~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~-----~~~g~~--v~~~~~iiI~tsN 800 (973)
++.+...+.. ....|+|+||++.+.+.+++.|+..++.+.+. ....+. .....+.++.++|
T Consensus 90 -----------~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 90 -----------QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp -----------HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred -----------HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 1122222222 34579999999999999999999888765321 000111 1223455666555
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
. ...+++.+.+||...+.|.|++.+++.+|+...... . .+.
T Consensus 159 ~------------------------------~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~--~~~ 199 (334)
T 1in4_A 159 R------------------------------SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------M--DVE 199 (334)
T ss_dssp C------------------------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------T--TCC
T ss_pred C------------------------------cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------c--CCC
Confidence 4 234678899999888999999999999999876532 2 357
Q ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 881 VTDAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 881 ~~~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
++++++.+|++.. . ...|.+.+.+++
T Consensus 200 ~~~~~~~~ia~~~-~--G~~R~a~~ll~~ 225 (334)
T 1in4_A 200 IEDAAAEMIAKRS-R--GTPRIAIRLTKR 225 (334)
T ss_dssp BCHHHHHHHHHTS-T--TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc-C--CChHHHHHHHHH
Confidence 8999999999853 2 235666555554
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.40 E-value=6.3e-13 Score=129.36 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=95.1
Q ss_pred CCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHH
Q 002068 256 PVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 333 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e 333 (973)
+++|++..++++.+.+.+ ....++||+||||||||++|+++++..... +.+++ ++++.+....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch-------
Confidence 579999999999987743 556789999999999999999999875322 56788 9988765431
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--CCCEEEEEccCchHHH--hhhccCHHHHcc
Q 002068 334 DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYR--KYIEKDPALERR 409 (973)
Q Consensus 334 ~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~i~iI~at~~~~~~--~~~~~d~al~~R 409 (973)
.....+..+ .+++|||||+|.+. .+.+..|..++. ..++++|++||.+... ..-.+++.|..|
T Consensus 67 -~~~~~~~~a----~~g~l~ldei~~l~--------~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 67 -QLNDFIALA----QGGTLVLSHPEHLT--------REQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp -CHHHHHHHH----TTSCEEEECGGGSC--------HHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred -hhhcHHHHc----CCcEEEEcChHHCC--------HHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 123344433 34699999999997 445666666664 3468899999976432 122456888888
Q ss_pred CceEEecCCC
Q 002068 410 FQQVYVDQPN 419 (973)
Q Consensus 410 f~~i~~~~p~ 419 (973)
|..+.+..|+
T Consensus 134 l~~~~i~lPp 143 (145)
T 3n70_A 134 FAMTQIACLP 143 (145)
T ss_dssp HHHHEEECCC
T ss_pred hcCCEEeCCC
Confidence 8755555553
No 152
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.39 E-value=4.8e-12 Score=137.40 Aligned_cols=197 Identities=22% Similarity=0.345 Sum_probs=127.8
Q ss_pred ccccccchHHHHHHHHHHHHHHc-------cCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~-------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (973)
++.++|+++++..+.+....... ++. -|. .++|+||||||||+++++|+..+ ..+++.+++.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~---~~~-gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE 111 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCC-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCC---CCC-eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHH
Confidence 56788888888887776654321 122 223 49999999999999999999988 47788888876543
Q ss_pred hhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHhhcCCeEecCCCc
Q 002068 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 721 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEid~l~--------------~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
.. .|. . ....+.++.......++++++||||.+. ...++.++..|+.|.
T Consensus 112 ~~-----~~~----~-~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~------- 174 (278)
T 1iy2_A 112 MF-----VGV----G-AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------- 174 (278)
T ss_dssp ST-----TTH----H-HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC-------
T ss_pred HH-----hhH----H-HHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC-------
Confidence 21 110 0 0001233344444556899999998652 234556666666542
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhc--ccceEEEcCCCCHHHHHHHHHHH
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
.-..+++++++|. ...++|+++. ||+..|.|++++.++..+|++.+
T Consensus 175 --~~~~~i~~a~t~~------------------------------p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 175 --KDTAIVVMAATNR------------------------------PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp --TTCCEEEEEEESC------------------------------TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred --CCCCEEEEEecCC------------------------------chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 1134678888886 2235677775 89999999999999999998765
Q ss_pred HHHHHHHHHhcCCceecCHHH-HHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 865 LDRVQKRIADRKMKMQVTDAA-IQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a-~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+. + +.+++++ +.+|+. .|++. ..|+|+.+++++...
T Consensus 223 ~~---------~--~~~~~~~~~~~la~-~~~G~-~~~dl~~l~~~a~~~ 259 (278)
T 1iy2_A 223 AR---------G--KPLAEDVDLALLAK-RTPGF-VGADLENLLNEAALL 259 (278)
T ss_dssp HT---------T--SCBCTTCCHHHHHH-TCTTC-CHHHHHHHHHHHHHH
T ss_pred Hc---------c--CCCCcccCHHHHHH-HcCCC-CHHHHHHHHHHHHHH
Confidence 42 2 2344444 566666 45543 347888887765543
No 153
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=6.9e-12 Score=140.30 Aligned_cols=170 Identities=20% Similarity=0.364 Sum_probs=120.5
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc--ceEEeccccccchhhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~--~~~~i~~~~~~~~~~~~ 725 (973)
+..++||+.+++.|...+... + ..+++|+||||||||++|+++++.+.+... .+..+++++......+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--------~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir 94 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--------K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR 94 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--------C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--------C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH
Confidence 467889999999988877631 1 125999999999999999999999865332 24455554321111111
Q ss_pred hhcCCCCCcccccccchhhHHHH-----hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN 800 (973)
.. +..... ...+.|++|||+|.+..+.++.|+..+++. ..++.||+++|
T Consensus 95 ~~---------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~il~~n 148 (340)
T 1sxj_C 95 NQ---------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-----------TKNTRFCVLAN 148 (340)
T ss_dssp TH---------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEES
T ss_pred HH---------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-----------CCCeEEEEEec
Confidence 10 111111 123579999999999999999999999862 24677888888
Q ss_pred CChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 002068 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQ 880 (973)
Q Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~ 880 (973)
. ...+.|.+.+|| ..+.|.+++.+++.+++...+.. . .+.
T Consensus 149 ~------------------------------~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~-------~--~~~ 188 (340)
T 1sxj_C 149 Y------------------------------AHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVH-------E--KLK 188 (340)
T ss_dssp C------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHT-------T--TCC
T ss_pred C------------------------------ccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHH-------c--CCC
Confidence 6 234677899999 58999999999998888766532 2 356
Q ss_pred cCHHHHHHHHhc
Q 002068 881 VTDAAIQLLGSL 892 (973)
Q Consensus 881 ~~~~a~~~L~~~ 892 (973)
++++++++++..
T Consensus 189 i~~~~~~~i~~~ 200 (340)
T 1sxj_C 189 LSPNAEKALIEL 200 (340)
T ss_dssp BCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888888888875
No 154
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=8e-12 Score=139.31 Aligned_cols=181 Identities=19% Similarity=0.226 Sum_probs=127.0
Q ss_pred chHHHHHHHHHhccCCCCC-ceEECCCCCcHHHHHHHHHHHHhcCCCCcc--------------cCCCeEEEEEcccccc
Q 002068 260 RDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------LMNRKLISLDMGALIA 324 (973)
Q Consensus 260 ~~~~i~~li~~l~~~~~~~-~LL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~~~~l~~~~~~~ 324 (973)
+++.++.+...+..+..+| +||+||||+|||++|+.+|+.+.+...... .....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 4566777777776666555 899999999999999999999865432110 0112355554321
Q ss_pred cccccchHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhh
Q 002068 325 GAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 399 (973)
Q Consensus 325 g~~~~g~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~ 399 (973)
+....+ .+.++.+++.+... ++..|++|||+|.+. .+++|.|+..++.. .+++|++|+...
T Consensus 84 ~~~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~a~naLLk~lEep~~~~~~Il~t~~~~---- 149 (334)
T 1a5t_A 84 GKNTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DAAANALLKTLEEPPAETWFFLATREPE---- 149 (334)
T ss_dssp TCSSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HHHHHHHHHHHTSCCTTEEEEEEESCGG----
T ss_pred cCCCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH----
Confidence 011111 23456666665432 346799999999997 45678888888854 688888888765
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHH
Q 002068 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDE 473 (973)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~ 473 (973)
.+.+++++||+.+.|++|+.++..+++.... .++++++..++.++.+ .|.+++.+++.
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G------~~r~a~~~l~~ 207 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAG------SPGAALALFQG 207 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTT------CHHHHHHTTSS
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCC------CHHHHHHHhcc
Confidence 6889999999999999999999887775432 5788999988888853 34566665554
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=2.9e-12 Score=144.22 Aligned_cols=197 Identities=13% Similarity=0.222 Sum_probs=122.4
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh-----
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH----- 722 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~----- 722 (973)
+..++||+.+++.+...+. . ..+.. +++|+||+|+|||++++++++.+++....-+.++...+....
T Consensus 13 ~~~~vg~~~~~~~l~~~~~------~-~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSD------Q-PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTT------C-TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred HHHhcCCHHHHHHHHHHHh------h-CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 4678999988887765541 1 12222 499999999999999999999775433222222211111000
Q ss_pred -------hhhhhcCCCCCcccccccchhhHHHH-----------------hCCCeEEEEccccccCHHHHHHHHHhhcCC
Q 002068 723 -------AVSRLIGAPPGYVGYEEGGQLTEVVR-----------------RRPYAVILFDEIEKAHSDVFNVFLQILDDG 778 (973)
Q Consensus 723 -------~~~~l~G~~~g~~g~~~~~~l~~~~~-----------------~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g 778 (973)
..-.+.+.. .+......+.+.+. ...+.|++|||++.+++..++.|++.|++-
T Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSD---MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp -CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred eeeecccceEEecHhh---cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000000000 00000001111111 124569999999999999999999999851
Q ss_pred eEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHH
Q 002068 779 RVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQIS 858 (973)
Q Consensus 779 ~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~ 858 (973)
..++.||++||. ...+.|.+.+|| ..+.|+|++.+++.
T Consensus 162 -----------~~~~~~Il~t~~------------------------------~~~l~~~l~sR~-~~~~~~~~~~~~~~ 199 (354)
T 1sxj_E 162 -----------SKNIRLIMVCDS------------------------------MSPIIAPIKSQC-LLIRCPAPSDSEIS 199 (354)
T ss_dssp -----------TTTEEEEEEESC------------------------------SCSSCHHHHTTS-EEEECCCCCHHHHH
T ss_pred -----------cCCCEEEEEeCC------------------------------HHHHHHHHHhhc-eEEecCCcCHHHHH
Confidence 235778888876 122567899999 88999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceecC-HHHHHHHHhcCCCCCCCccHHHHHHHH
Q 002068 859 SIVRLQLDRVQKRIADRKMKMQVT-DAAIQLLGSLGYDPNYGARPVKRVIQQ 909 (973)
Q Consensus 859 ~I~~~~l~~~~~~~~~~~~~l~~~-~~a~~~L~~~~~~~~~gaR~L~r~i~~ 909 (973)
+++...+.. .| +.++ +++++.|++.. . .+.|.+.+.+++
T Consensus 200 ~~l~~~~~~-------~~--~~~~~~~~l~~i~~~~-~--G~~r~a~~~l~~ 239 (354)
T 1sxj_E 200 TILSDVVTN-------ER--IQLETKDILKRIAQAS-N--GNLRVSLLMLES 239 (354)
T ss_dssp HHHHHHHHH-------HT--CEECCSHHHHHHHHHH-T--TCHHHHHHHHTH
T ss_pred HHHHHHHHH-------cC--CCCCcHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 988877643 33 5688 99999999853 2 336666666654
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.35 E-value=1.5e-12 Score=150.41 Aligned_cols=175 Identities=17% Similarity=0.317 Sum_probs=119.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCC--CcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lD 758 (973)
+++|+||||||||++|++|++.+... +.+++++++..+.... ...+... ....+.... .....|||||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~~~~--------~~~~~~~~~-~~~~~vL~ID 201 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSMKEG--------KLNEFREKY-RKKVDILLID 201 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHHHTT--------CHHHHHHHH-TTTCSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHHHcc--------cHHHHHHHh-cCCCCEEEEe
Confidence 69999999999999999999988433 5678899988764321 1111000 001111111 1146799999
Q ss_pred cccccCH--HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccC
Q 002068 759 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (973)
Q Consensus 759 Eid~l~~--~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 836 (973)
|++.+.. ..++.|+..++.-. -.+..+|+||+.....+ ..+.
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~----------~~~~~iIitt~~~~~~l--------------------------~~l~ 245 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKL--------------------------SEFQ 245 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHH----------TTTCEEEEEESSCGGGC--------------------------SSCC
T ss_pred CcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEECCCHHHH--------------------------HHHH
Confidence 9999986 78888888875311 01234556666533222 1256
Q ss_pred hhhhcccc--eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q 002068 837 PEFMNRVD--EYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVEN 913 (973)
Q Consensus 837 p~ll~R~d--~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~ 913 (973)
+.|++||+ .++.|++++.+++..|+...+.. .+ +.++++++++|+.. ++ .++|.+.+.+++++..
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~~--~~i~~e~l~~la~~-~~--gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI-------EH--GELPEEVLNFVAEN-VD--DNLRRLRGAIIKLLVY 312 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-------HT--CCCCTTHHHHHHHH-CC--SCHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-cC--CCHHHHHHHHHHHHHH
Confidence 78899995 68999999999999999877643 23 56899999999985 34 3489998888876544
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4e-12 Score=150.17 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=130.1
Q ss_pred ccccccchHHHHHHHHHHHHHHc----cCCCCC----CCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRA----GLSDPH----RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~----~~~~~~----~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
+.+++|++.+++.|...+..+.. +...+. .+..++||+||||||||++|+++|+.+ +.+++.++|++..
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~ 114 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVR 114 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcc
Confidence 46799999999999988875432 222111 122479999999999999999999999 6889999999876
Q ss_pred chhhhhhhcCCCCCcccccccchhhHH-----HHhCCCeEEEEccccccCHH---HHHHHHHhhcCCeEecCCCcEEecc
Q 002068 720 EKHAVSRLIGAPPGYVGYEEGGQLTEV-----VRRRPYAVILFDEIEKAHSD---VFNVFLQILDDGRVTDSQGRTVSFT 791 (973)
Q Consensus 720 ~~~~~~~l~G~~~g~~g~~~~~~l~~~-----~~~~~~~Vl~lDEid~l~~~---v~~~Ll~~le~g~~~~~~g~~v~~~ 791 (973)
........++...... ....++.. .....+.||||||+|.+... .++.|+++++.+
T Consensus 115 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~------------- 178 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------------- 178 (516)
T ss_dssp CHHHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------------
Confidence 5433322222110000 00001111 12345689999999999764 347888888752
Q ss_pred CEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 792 ~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+..||+++|... ...++ .|.+|+ ..|.|++++.+++.+++...+..
T Consensus 179 ~~~iIli~~~~~----------------------------~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~---- 224 (516)
T 1sxj_A 179 STPLILICNERN----------------------------LPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIR---- 224 (516)
T ss_dssp SSCEEEEESCTT----------------------------SSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHH----
T ss_pred CCCEEEEEcCCC----------------------------Cccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHH----
Confidence 122445555310 01122 355565 78999999999999988766532
Q ss_pred HHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 872 IADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
.+ +.+++++++.|++.. . .+.|.+.+.++.+
T Consensus 225 ---~~--~~i~~~~l~~la~~s-~--GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 225 ---EK--FKLDPNVIDRLIQTT-R--GDIRQVINLLSTI 255 (516)
T ss_dssp ---HT--CCCCTTHHHHHHHHT-T--TCHHHHHHHHTHH
T ss_pred ---cC--CCCCHHHHHHHHHHc-C--CcHHHHHHHHHHH
Confidence 23 568999999999863 2 2367766666543
No 158
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=7.1e-12 Score=137.19 Aligned_cols=145 Identities=15% Similarity=0.269 Sum_probs=103.8
Q ss_pred cchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc--C-CCcceEEeccccccchhhhhhhcC
Q 002068 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF--N-TEEALVRIDMSEYMEKHAVSRLIG 729 (973)
Q Consensus 653 Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~--~-~~~~~~~i~~~~~~~~~~~~~l~G 729 (973)
||+++++.|.+.+... + ..++||+||||+|||++|+++++.+. . ....++.++.++
T Consensus 1 g~~~~~~~L~~~i~~~--------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTC--------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCC--------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 7888999998888631 1 22799999999999999999998641 1 123455555431
Q ss_pred CCCCcccccccchhhHHHHhCC----CeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhh
Q 002068 730 APPGYVGYEEGGQLTEVVRRRP----YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 805 (973)
Q Consensus 730 ~~~g~~g~~~~~~l~~~~~~~~----~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~ 805 (973)
...+.+..+.+.+.+...| +.|+||||+|.+....+|.|++.||+ ...+++||++||.
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~---- 121 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRR---- 121 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESC----
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECC----
Confidence 0122222223444444333 57999999999999999999999997 3357888888875
Q ss_pred hhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHHH
Q 002068 806 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQL 865 (973)
Q Consensus 806 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l 865 (973)
...+.|.+.+| ++.|+|++.+++.+.+...+
T Consensus 122 --------------------------~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 122 --------------------------WHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --------------------------GGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred --------------------------hHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 23477889999 89999999999999888765
No 159
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=2.9e-13 Score=131.45 Aligned_cols=131 Identities=13% Similarity=0.174 Sum_probs=91.1
Q ss_pred CCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHH
Q 002068 256 PVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 333 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e 333 (973)
+++|++..++++.+.+.+ ....+++|+||||||||++|+++++.. . +++.++++.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 479999998888887643 556789999999999999999998865 3 78888877654211
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcC---CCEEEEEccCchHHH-hhhccCHHHHcc
Q 002068 334 DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYR-KYIEKDPALERR 409 (973)
Q Consensus 334 ~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~i~iI~at~~~~~~-~~~~~d~al~~R 409 (973)
...++..+ .+++|||||++.+. .+.++.|..+++. .++++|++||.+... ..- +++.|..|
T Consensus 67 --~~~~~~~a----~~~~l~lDei~~l~--------~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~r 131 (143)
T 3co5_A 67 --PMELLQKA----EGGVLYVGDIAQYS--------RNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGL 131 (143)
T ss_dssp --HHHHHHHT----TTSEEEEEECTTCC--------HHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHH
T ss_pred --hhhHHHhC----CCCeEEEeChHHCC--------HHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHH
Confidence 23344332 35699999999997 4566667777763 469999999976421 100 44677788
Q ss_pred CceEEecCCC
Q 002068 410 FQQVYVDQPN 419 (973)
Q Consensus 410 f~~i~~~~p~ 419 (973)
|..+.+..|+
T Consensus 132 l~~~~i~lPp 141 (143)
T 3co5_A 132 FSESVVRIPP 141 (143)
T ss_dssp SSSEEEEECC
T ss_pred hcCcEEeCCC
Confidence 8766555554
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.32 E-value=7.8e-13 Score=134.27 Aligned_cols=158 Identities=18% Similarity=0.282 Sum_probs=105.7
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-------CCcceEEeccccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEY 718 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~ 718 (973)
..+..++|+++.++.+...+.. ..+ .+++|+||||||||++|+.+++.+.. .+.+++.++|+.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------RTK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------SSS-CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred ccccccccchHHHHHHHHHHhc--------CCC-CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 3467899999988888777642 112 27999999999999999999998843 2467788888765
Q ss_pred cchhhhhhhcCCCCCcccccc--cchhhHHH-HhCCCeEEEEccccccC--------HHHHHHHHHhhcCCeEecCCCcE
Q 002068 719 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVV-RRRPYAVILFDEIEKAH--------SDVFNVFLQILDDGRVTDSQGRT 787 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~-~~~~~~Vl~lDEid~l~--------~~v~~~Ll~~le~g~~~~~~g~~ 787 (973)
.... .+.+... ...+...+ +...+.||+|||+|.+. ..+++.|..+++.+
T Consensus 90 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------- 150 (195)
T 1jbk_A 90 VAGA----------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------- 150 (195)
T ss_dssp HTTT----------CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT---------
T ss_pred hccC----------CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC---------
Confidence 3210 0111100 01222222 23456799999999995 34577888887653
Q ss_pred EeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHH
Q 002068 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV 861 (973)
Q Consensus 788 v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~ 861 (973)
++.+|+++|... ... ...+++.|.+||+ .|.|++++.+++.+|+
T Consensus 151 ----~~~~i~~~~~~~-------------------~~~------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ----ELHCVGATTLDE-------------------YRQ------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----SCCEEEEECHHH-------------------HHH------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ----CeEEEEeCCHHH-------------------HHH------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 455788887511 000 1135788999996 6999999999987764
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.29 E-value=2.5e-11 Score=146.13 Aligned_cols=214 Identities=18% Similarity=0.238 Sum_probs=136.7
Q ss_pred HHHhcCCCCCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc--
Q 002068 247 AMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 324 (973)
Q Consensus 247 ~~~~~~~l~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-- 324 (973)
.+++|..|++++|++..++.+...+... .+++|+|||||||||+|++|+..+.... ...+.++......
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~-------~~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTET-------LEDILVFPNPEDENM 103 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSS-------CEEEEEECCTTCTTS
T ss_pred ccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCccc-------CCeEEEeCCcccccC
Confidence 3567788889999999998888877544 5899999999999999999999873321 0111111100000
Q ss_pred ----------------------------------------------------cccccchHHHHHHHHHHH----------
Q 002068 325 ----------------------------------------------------GAKYRGEFEDRLKAVLKE---------- 342 (973)
Q Consensus 325 ----------------------------------------------------g~~~~g~~e~~l~~~~~~---------- 342 (973)
+.............+|..
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 000000000001111110
Q ss_pred ------------HHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------------------CEEE
Q 002068 343 ------------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRC 387 (973)
Q Consensus 343 ------------~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------------------~i~i 387 (973)
......+++|||||++.+. ..+++.|+++|+.+ ++++
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~v 255 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVL 255 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEE
T ss_pred ccccccccccCceeeecCCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEE
Confidence 0011245699999999985 56778888888632 5679
Q ss_pred EEccCchHHHhhhccCHHHHccCc----eEEecCC---CHHHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHhcccccC
Q 002068 388 IGATTLDEYRKYIEKDPALERRFQ----QVYVDQP---NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~----~i~~~~p---~~~e~~~il~~~~~~~~~~-~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
|++||...+. .++++|++||. .+.++.. +.+....+++.+...+... ....++++++..++.++.++-.
T Consensus 256 I~atn~~~~~---~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g 332 (604)
T 3k1j_A 256 VAAGNLDTVD---KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAG 332 (604)
T ss_dssp EEEECHHHHH---HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTC
T ss_pred EEecCHHHHh---hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhc
Confidence 9999987542 58999999995 3444332 4555666666666554432 2357899999999998877766
Q ss_pred CCC----CchHHHHHHHHHHhhhhh
Q 002068 460 GRF----LPDKAIDLVDEAAAKLKM 480 (973)
Q Consensus 460 ~r~----~p~~a~~lld~a~~~~~~ 480 (973)
.+. .+....+++..|...+..
T Consensus 333 ~r~~l~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 333 RKGHLTLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp STTEEECCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHHHHh
Confidence 654 567777888887766544
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=1.4e-11 Score=139.81 Aligned_cols=214 Identities=18% Similarity=0.248 Sum_probs=135.9
Q ss_pred ccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCC---CcceEEeccccccchhhh
Q 002068 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT---EEALVRIDMSEYMEKHAV 724 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~---~~~~~~i~~~~~~~~~~~ 724 (973)
...++|++..++.+...+.....+ ..+ .+++|+||+|||||++++.+++.+... +.+++.++|.........
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~----~~~-~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE----EKP-NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT----CCC-CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHH
Confidence 367899999998888776643222 111 269999999999999999999988433 467889998765432211
Q ss_pred ----hhhcCCCCCcccccc---cchhhHHHHhCC-CeEEEEccccccC----HHHHHHHHHhhcCCeEecCCCcEEeccC
Q 002068 725 ----SRLIGAPPGYVGYEE---GGQLTEVVRRRP-YAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (973)
Q Consensus 725 ----~~l~G~~~g~~g~~~---~~~l~~~~~~~~-~~Vl~lDEid~l~----~~v~~~Ll~~le~g~~~~~~g~~v~~~~ 792 (973)
...+|...+..+... ...+...+.... +.||+|||++.+. .+++..|+..++.. .-.+
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~ 163 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSK 163 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCe
Confidence 112233222222111 112333444333 6799999999885 56788888877642 1135
Q ss_pred EEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccc-eEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 002068 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQLDRVQKR 871 (973)
Q Consensus 793 ~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d-~~i~f~~l~~~~l~~I~~~~l~~~~~~ 871 (973)
+.+|+++|... . ...+.+.+.+||. ..+.|+|++.+++.+++...+..
T Consensus 164 ~~~I~~~~~~~-~--------------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~---- 212 (386)
T 2qby_A 164 ISFIGITNDVK-F--------------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM---- 212 (386)
T ss_dssp EEEEEEESCGG-G--------------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH----
T ss_pred EEEEEEECCCC-h--------------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh----
Confidence 67888888521 0 1234566777875 48999999999999999886642
Q ss_pred HHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 872 IADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 872 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
......++++++++++...+......|.+.+.+...
T Consensus 213 ---~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 213 ---AFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp ---HBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ---hccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111356889999999886542223356555555543
No 163
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.27 E-value=6.9e-11 Score=137.42 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=122.0
Q ss_pred CCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc-----cccccccccc
Q 002068 256 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG-----ALIAGAKYRG 330 (973)
Q Consensus 256 ~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~~~g 330 (973)
.++|++..++.+...+..+ .|+||+||||||||++|+++|..+.. +.++..+++. .+.+. +.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~G~--~~~ 90 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVFGP--LSI 90 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHHCC--BC-
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhcCc--ccH
Confidence 3899999999998877554 48999999999999999999997621 2344444432 11110 011
Q ss_pred hHHHHHHHHHHHHHHh--CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCE------------EEEEccCchHH
Q 002068 331 EFEDRLKAVLKEVTES--EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGEL------------RCIGATTLDEY 396 (973)
Q Consensus 331 ~~e~~l~~~~~~~~~~--~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i------------~iI~at~~~~~ 396 (973)
..... ...+..+... ..+.|||||||+.+. ...++.|..+++.+.+ .+|+|||..+-
T Consensus 91 ~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe 161 (500)
T 3nbx_X 91 QALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE 161 (500)
T ss_dssp ----------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC
T ss_pred HHHhh-chhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC
Confidence 00000 1111111110 024589999998875 5677888888865422 34777775321
Q ss_pred HhhhccCHHHHccCc-eEEecCCCH-HHHHHHHHHHHH-------------------HHhhhcCCccCHHHHHHHHHhcc
Q 002068 397 RKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRE-------------------RYELHHGVRISDSALVEAAILSD 455 (973)
Q Consensus 397 ~~~~~~d~al~~Rf~-~i~~~~p~~-~e~~~il~~~~~-------------------~~~~~~~v~i~~~~l~~l~~~s~ 455 (973)
. ....+++.+||. .+.++.|+. +++..|++.... ......++.++++++++++.+..
T Consensus 162 ~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 162 A--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp T--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred c--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 0 123469999997 589999976 677788754221 11122467889999998888763
Q ss_pred c--cc--CCCCCchHHHHHHHHHHhhhhhh
Q 002068 456 R--YI--SGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 456 ~--~i--~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
. .. .....|...+.++..|.+.+.+.
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 1 00 01123445666777666655544
No 164
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=3.7e-11 Score=131.53 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=107.5
Q ss_pred CchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHH
Q 002068 259 GRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKA 338 (973)
Q Consensus 259 G~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~ 338 (973)
|+++.++.+...+..+..++.||+||||+|||++|+++++.+.... . .+..++.++.+.- ..| .+.++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~--~--~~~d~~~l~~~~~-----~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFP--P--KASDVLEIDPEGE-----NIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSC--C--CTTTEEEECCSSS-----CBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhh--c--cCCCEEEEcCCcC-----CCC--HHHHHH
Confidence 6777788888888766666789999999999999999998642111 1 2345777765421 111 234667
Q ss_pred HHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC--CEEEEEccCchHHHhhhccCHHHHccCceE
Q 002068 339 VLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQV 413 (973)
Q Consensus 339 ~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i~iI~at~~~~~~~~~~~d~al~~Rf~~i 413 (973)
+++.+... ++..|+||||+|.|. .+++|.|++.++.+ .+++|++|+... .+.|++++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt--------~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMT--------QQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBC--------HHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhC--------HHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 77766542 235799999999997 55788899999864 788888887764 688999999 89
Q ss_pred EecCCCHHHHHHHHHHHH
Q 002068 414 YVDQPNVEDTISILRGLR 431 (973)
Q Consensus 414 ~~~~p~~~e~~~il~~~~ 431 (973)
.|.+|+.++..+.+...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999888876654
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.21 E-value=3.1e-11 Score=121.84 Aligned_cols=150 Identities=22% Similarity=0.294 Sum_probs=99.6
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcC-------CCcceEEeccccc
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEY 718 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~ 718 (973)
..+..++|++..+..+...+.. ....+++|+||||||||++|+.+++.+.. .+.+++.+++..+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL 89 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH
T ss_pred cccchhhcchHHHHHHHHHHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh
Confidence 3467899999988888777642 11127999999999999999999998854 2566777777665
Q ss_pred cchhhhhhhcCCCCCccccc--ccchhhHHHHhC-CCeEEEEccccccC---------HHHHHHHHHhhcCCeEecCCCc
Q 002068 719 MEKHAVSRLIGAPPGYVGYE--EGGQLTEVVRRR-PYAVILFDEIEKAH---------SDVFNVFLQILDDGRVTDSQGR 786 (973)
Q Consensus 719 ~~~~~~~~l~G~~~g~~g~~--~~~~l~~~~~~~-~~~Vl~lDEid~l~---------~~v~~~Ll~~le~g~~~~~~g~ 786 (973)
.... .+.+.. ....+...+... .+.||||||+|.+. .++++.|...++.+
T Consensus 90 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~-------- 151 (187)
T 2p65_A 90 IAGA----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG-------- 151 (187)
T ss_dssp HHHC----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--------
T ss_pred hcCC----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC--------
Confidence 3211 011100 001223333333 45799999999997 56788888888753
Q ss_pred EEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCC
Q 002068 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (973)
Q Consensus 787 ~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~ 853 (973)
++++|+++|..... . ...+.+.|.+||+ .|.+++++
T Consensus 152 -----~~~ii~~~~~~~~~-------------------~------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 -----ELRCIGATTVSEYR-------------------Q------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp -----CSCEEEEECHHHHH-------------------H------HTTTCHHHHHHEE-EEECCSCC
T ss_pred -----CeeEEEecCHHHHH-------------------H------HHhccHHHHHhcC-cccCCCCC
Confidence 45688888862100 0 1135788999996 58888764
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=2.5e-10 Score=130.95 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=136.8
Q ss_pred CCCCCchHHHHHHHHHh-cc------CCCCCceE--ECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-
Q 002068 255 DPVIGRDDEIRRCIQIL-SR------RTKNNPVL--IGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA- 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l-~~------~~~~~~LL--~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~- 324 (973)
+.++||+.+++.+...+ .. ....+++| +||||+|||++++.+++.+.... +....+..++.+++.....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCH
Confidence 56999999999998887 42 24456788 99999999999999999874310 0000145677777643210
Q ss_pred -----------ccc--ccch-HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc-----C--C
Q 002068 325 -----------GAK--YRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----R--G 383 (973)
Q Consensus 325 -----------g~~--~~g~-~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~-----~--g 383 (973)
+.. ..|. ....+..+...+...+.++||+|||+|++..... ...+....|...+. . .
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCCc
Confidence 000 0111 1222333333333335678999999999974311 11233333333332 3 6
Q ss_pred CEEEEEccCchHHHhhhccC---HHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHhcccccC
Q 002068 384 ELRCIGATTLDEYRKYIEKD---PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (973)
Q Consensus 384 ~i~iI~at~~~~~~~~~~~d---~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~ 459 (973)
++.+|++|+..++.. .++ +.+.+||. .+.+++++.++..+++...+.... ....++++++..++..+.+..+
T Consensus 179 ~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 179 RIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp BEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGT
T ss_pred eEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhcc
Confidence 788999887665432 234 66778875 489999999999999977665321 2345789999999998874433
Q ss_pred CCCCchHHHHHHHHHHhhh
Q 002068 460 GRFLPDKAIDLVDEAAAKL 478 (973)
Q Consensus 460 ~r~~p~~a~~lld~a~~~~ 478 (973)
....|..+..++..++..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMA 273 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 3356777888887766443
No 167
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.12 E-value=3.3e-11 Score=140.18 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=75.9
Q ss_pred hhccccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhh
Q 002068 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 725 (973)
Q Consensus 646 ~l~~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~ 725 (973)
..++.++||+++++.+...+...+.+...+ .++||+||||||||++|+++|+.+. ...+|+.++++++...
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~----~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~~~~---- 104 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEVYST---- 104 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGGCCS----
T ss_pred hchhhccCHHHHHHHHHHHHHHHHhCCCCC----CeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHHHHH----
Confidence 356889999999999988887776654422 3799999999999999999999983 2378999999887532
Q ss_pred hhcCCCCCcccccccchhhHHHHhC------CCeEEEEccccccCH
Q 002068 726 RLIGAPPGYVGYEEGGQLTEVVRRR------PYAVILFDEIEKAHS 765 (973)
Q Consensus 726 ~l~G~~~g~~g~~~~~~l~~~~~~~------~~~Vl~lDEid~l~~ 765 (973)
++|..+ .+...++.+ .++||||||||.+.+
T Consensus 105 --------~~~~~~--~~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 105 --------EIKKTE--VLMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp --------SSCHHH--HHHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred --------hhhhhH--HHHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 333221 244444443 568999999998863
No 168
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=7.6e-11 Score=140.85 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=113.7
Q ss_pred CCCCCchHHHHHHHHHhccCCC-----------CCceEECCCCCcHHHHHHHHHHHHhcCCCCcc--cCCCeEEEEEccc
Q 002068 255 DPVIGRDDEIRRCIQILSRRTK-----------NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--LMNRKLISLDMGA 321 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~~~-----------~~~LL~GppG~GKT~la~~la~~l~~~~~p~~--l~~~~~~~l~~~~ 321 (973)
..++|++...+.++..+..... .|+||+||||||||++|+++|+.+.....+.. .....+..-....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 3589998877666555544421 28999999999999999999988722111100 0000011100000
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------CEE
Q 002068 322 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELR 386 (973)
Q Consensus 322 ~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------~i~ 386 (973)
.. .|..... ...+..+ .++||||||++.+. .+.++.|..+|+.+ ++.
T Consensus 375 ~~-----~g~~~~~-~G~l~~A----~~gil~IDEid~l~--------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 375 KG-----TGEYYLE-AGALVLA----DGGIAVIDEIDKMR--------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp GG-----TSSCSEE-ECHHHHH----SSSEECCTTTTCCC--------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred cc-----ccccccc-CCeeEec----CCCcEEeehhhhCC--------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 00 1110000 0011111 35699999999986 45677888888754 346
Q ss_pred EEEccCchH--HHh------hhccCHHHHccCc-e-EEecCCCHHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHhcc
Q 002068 387 CIGATTLDE--YRK------YIEKDPALERRFQ-Q-VYVDQPNVEDTISILRGLRERYEL-HHGVRISDSALVEAAILSD 455 (973)
Q Consensus 387 iI~at~~~~--~~~------~~~~d~al~~Rf~-~-i~~~~p~~~e~~~il~~~~~~~~~-~~~v~i~~~~l~~l~~~s~ 455 (973)
+|+|||+.. |.. .+.++++|.+||+ . +..+.|+.+ ...|++.+...... .....++.+.+.....++.
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 999999863 110 1278999999997 3 445556666 66777666653211 1122345555555555554
Q ss_pred cccCCCCCchHHHHHHHHHHhh
Q 002068 456 RYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 456 ~~i~~r~~p~~a~~lld~a~~~ 477 (973)
.++.- .+++.+.+.+......
T Consensus 516 ~~~~p-~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 516 KYVTP-KITSEAKNLITDFFVE 536 (595)
T ss_dssp HHHCC-CCCCCTHHHHHHHHTT
T ss_pred HhCCC-CCCHHHHHHHHHHHHH
Confidence 43222 3555566666555443
No 169
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.01 E-value=1.3e-08 Score=115.56 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=121.3
Q ss_pred CCCCCCchHHHHHHHHHhcc--CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------
Q 002068 254 LDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------- 324 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~--~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~------- 324 (973)
+..++|....++.+.+.+.+ ....+++++|++|||||++|+.++..... .+.+++.+||+.+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCHHHHHHHh
Confidence 56799999888888776543 44567899999999999999999987522 256899999987531
Q ss_pred -cc---cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEE
Q 002068 325 -GA---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRC 387 (973)
Q Consensus 325 -g~---~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~i 387 (973)
|. .+.|.... ....|.. ..+++||||||+.+. .+.+..|.++++.+ ++++
T Consensus 209 fg~~~g~~tga~~~-~~g~~~~----a~~gtlfldei~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 275 (387)
T 1ny5_A 209 FGYEKGAFTGAVSS-KEGFFEL----ADGGTLFLDEIGELS--------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRI 275 (387)
T ss_dssp HCBCTTSSTTCCSC-BCCHHHH----TTTSEEEEESGGGCC--------HHHHHHHHHHHHHSEECCBTCCSBEECCCEE
T ss_pred cCCCCCCCCCcccc-cCCceee----CCCcEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 11 01111110 0112222 235699999999997 56788888888643 6789
Q ss_pred EEccCchHHHh--hhccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 388 IGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 388 I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~~----e~~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
|+|||.+.... --...+.|..|+..+.+..|+.. +...+++.++.++...++ ..++++++..+..+.
T Consensus 276 i~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 276 LAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp EEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC
T ss_pred EEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 99999754221 11345777888887777777654 445555666665544333 347888887776653
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.99 E-value=6.8e-09 Score=115.92 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=115.8
Q ss_pred CCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc------c----
Q 002068 255 DPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI------A---- 324 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~------~---- 324 (973)
+.++||+.+++.+.+.+... ..++++||+|+|||+|++.+++.. + ++.+++.... .
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 35899999999999988653 678999999999999999999875 2 5556654321 0
Q ss_pred -------------------------cccc---cchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHH
Q 002068 325 -------------------------GAKY---RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLL 376 (973)
Q Consensus 325 -------------------------g~~~---~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L 376 (973)
+... ...+...+ ..+.......++++|+|||+|++..... ....+....|
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~~~~~L 155 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVF-RELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKELLALF 155 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHH-HHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHH-HHHHHHHhccCCEEEEEeCHHHHhccCc-cchhhHHHHH
Confidence 0000 01112112 1222221112389999999999974110 0123456667
Q ss_pred hhhhcC-CCEEEEEccCchHH-Hhh---hccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCHHHHHHH
Q 002068 377 KPMLGR-GELRCIGATTLDEY-RKY---IEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEA 450 (973)
Q Consensus 377 ~~~l~~-g~i~iI~at~~~~~-~~~---~~~d~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~~~~l~~l 450 (973)
+..++. .++.+|.+++.... ... ......+..|+. .+.+.+.+.++..+++..... ..+..++++.+..+
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~----~~~~~~~~~~~~~i 231 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR----EVNLDVPENEIEEA 231 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 666653 57888888776543 222 122334555554 789999999999988876544 24566788888888
Q ss_pred HHhccc
Q 002068 451 AILSDR 456 (973)
Q Consensus 451 ~~~s~~ 456 (973)
...+.+
T Consensus 232 ~~~tgG 237 (350)
T 2qen_A 232 VELLDG 237 (350)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 888764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.97 E-value=3.3e-09 Score=121.59 Aligned_cols=207 Identities=11% Similarity=0.143 Sum_probs=125.7
Q ss_pred ccccccchHHHHHHHHHH-HHHHccCCCCCCCceEEEe--ecCCCCcHHHHHHHHHHHhcCC------CcceEEeccccc
Q 002068 648 HKRVVGQDPAVKSVAEAI-QRSRAGLSDPHRPIASFMF--MGPTGVGKTELAKALASYMFNT------EEALVRIDMSEY 718 (973)
Q Consensus 648 ~~~v~Gq~~~i~~l~~~i-~~~~~~~~~~~~p~~~~Ll--~Gp~GtGKT~lA~~la~~l~~~------~~~~~~i~~~~~ 718 (973)
...++|.+..++.|...+ .....+.. ..+ .++++ +||+|+|||++++.+++.+... +..++.++|...
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~--~~~-~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAG--LSD-VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSC--BCC-EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCC--CCC-CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 367999999999999988 76554311 112 36888 9999999999999999887421 356788888654
Q ss_pred cchhhh----hhhcCCCCCcccccc---cchhhHHHH-hCCCeEEEEccccccC------HHHHHHHHHhhcCCeEecCC
Q 002068 719 MEKHAV----SRLIGAPPGYVGYEE---GGQLTEVVR-RRPYAVILFDEIEKAH------SDVFNVFLQILDDGRVTDSQ 784 (973)
Q Consensus 719 ~~~~~~----~~l~G~~~g~~g~~~---~~~l~~~~~-~~~~~Vl~lDEid~l~------~~v~~~Ll~~le~g~~~~~~ 784 (973)
...... ...+|.+....+... ...+...+. ...+.||+|||++.+. .+++..|+..++.....
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~--- 174 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR--- 174 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT---
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC---
Confidence 332221 122343221112111 112233333 2446799999999975 47777777777542100
Q ss_pred CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHHHHHH
Q 002068 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (973)
Q Consensus 785 g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~ 864 (973)
+ .-.++.||+|+|... +...+. . ..+.+.+++...+.|+|++.+++.+++...
T Consensus 175 ~---~~~~v~lI~~~~~~~-------------------~~~~l~----~-~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 175 D---GVNRIGFLLVASDVR-------------------ALSYMR----E-KIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp T---SCCBEEEEEEEEETH-------------------HHHHHH----H-HCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred C---CCceEEEEEEecccc-------------------HHHHHh----h-hcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 0 013567888876411 001111 0 014455666555999999999999999876
Q ss_pred HHHHHHHHHhcCCceecCHHHHHHHHhcCC
Q 002068 865 LDRVQKRIADRKMKMQVTDAAIQLLGSLGY 894 (973)
Q Consensus 865 l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~ 894 (973)
+... +....+++++++.+.+...
T Consensus 228 ~~~~-------~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 228 AELG-------LRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp HHHH-------BCTTSCCHHHHHHHHHHHC
T ss_pred HHhc-------CCCCCCChHHHHHHHHHHH
Confidence 6431 1123578999999888643
No 172
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.95 E-value=7.8e-09 Score=116.33 Aligned_cols=179 Identities=17% Similarity=0.229 Sum_probs=118.7
Q ss_pred CCCCCchHHHHHHHHHhc--cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc-------
Q 002068 255 DPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------- 325 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~--~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g------- 325 (973)
..++|....+.++...+. .....+++++|++||||+.+|+.++..... ...++.+||+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhc
Confidence 357898887777666543 245567999999999999999999987522 123999999875311
Q ss_pred -c---cccchHHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-------------CEEEE
Q 002068 326 -A---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 388 (973)
Q Consensus 326 -~---~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI 388 (973)
. .+.|.... -...|+. ..+++||||||+.|. .+.+..|.++++.+ ++++|
T Consensus 201 g~~~g~~tga~~~-~~g~~~~----a~~gtlfldei~~l~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 201 GHEKGAFTGALTR-KKGKLEL----ADQGTLFLDEVGELD--------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp EECSCSSSSCCCC-EECHHHH----TTTSEEEEETGGGSC--------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred CccccccCCcccc-cCChHhh----cCCCeEEecChhhCC--------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 0 01111100 0112222 235689999999997 66788888888754 57899
Q ss_pred EccCchHHHh--hhccCHHHHccCceEEecCCCH----HHHHHHHHHHHHHHhhhcC---CccCHHHHHHHHHhc
Q 002068 389 GATTLDEYRK--YIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG---VRISDSALVEAAILS 454 (973)
Q Consensus 389 ~at~~~~~~~--~~~~d~al~~Rf~~i~~~~p~~----~e~~~il~~~~~~~~~~~~---v~i~~~~l~~l~~~s 454 (973)
+|||.+.... --...+.|..|+..+.+..|+. ++...+++.++.++....+ ..++++++..+..+.
T Consensus 268 ~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 268 SATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 9999775431 1134567888988766666654 4556666777776654433 458899888777654
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=9.6e-09 Score=114.95 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=111.4
Q ss_pred CCCCCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-----cccccc
Q 002068 255 DPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----AGAKYR 329 (973)
Q Consensus 255 ~~iiG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~-----~g~~~~ 329 (973)
+.++||++++..+.+ +.. +.++++||+|+|||+|++.+++.+ +..++.+++.... ......
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHHHH
Confidence 358999999999999 765 578999999999999999999987 3345667665420 000000
Q ss_pred ------------------------------c---h------HHHHHHHHHHHHHHhC-CCeEEEEccccccccCCCCCch
Q 002068 330 ------------------------------G---E------FEDRLKAVLKEVTESE-GQIILFIDEIHTVVGAGATNGA 369 (973)
Q Consensus 330 ------------------------------g---~------~e~~l~~~~~~~~~~~-~~~ILfiDEi~~l~~~~~~~~~ 369 (973)
+ . ....+..+++.+.... ++++|+|||+|++.... .
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----~ 154 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----G 154 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT----T
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC----c
Confidence 0 0 0012334555554432 38899999999997521 1
Q ss_pred hhHHHHHhhhhcC-CCEEEEEccCchHH-Hhh---hccCHHHHccC-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccC
Q 002068 370 MDAGNLLKPMLGR-GELRCIGATTLDEY-RKY---IEKDPALERRF-QQVYVDQPNVEDTISILRGLRERYELHHGVRIS 443 (973)
Q Consensus 370 ~~~~~~L~~~l~~-g~i~iI~at~~~~~-~~~---~~~d~al~~Rf-~~i~~~~p~~~e~~~il~~~~~~~~~~~~v~i~ 443 (973)
.+....|....+. .++.+|.+++.... ... ......+..|+ ..+.+.+.+.++..+++...... .+...+
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~ 230 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE----ADIDFK 230 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH----HTCCCC
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH----cCCCCC
Confidence 2334455555543 46888888876542 222 12233455565 57999999999999988765543 233333
Q ss_pred HHHHHHHHHhccc
Q 002068 444 DSALVEAAILSDR 456 (973)
Q Consensus 444 ~~~l~~l~~~s~~ 456 (973)
+. ..+...+.+
T Consensus 231 ~~--~~i~~~t~G 241 (357)
T 2fna_A 231 DY--EVVYEKIGG 241 (357)
T ss_dssp CH--HHHHHHHCS
T ss_pred cH--HHHHHHhCC
Confidence 33 555566643
No 174
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.90 E-value=2.1e-09 Score=104.38 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=84.2
Q ss_pred chhhhhccccchhhhccCccccccccccccccCCCCCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCC
Q 002068 40 NFFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCEATSGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQK 119 (973)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~ 119 (973)
.+.++|...|++....+..+++.+.+.- . .+.+. -.||+.++++|+.|..+|+++|+.+|++||||+||+.++
T Consensus 46 ~~~~iL~~~gv~~~~l~~~l~~~l~~~~--~--~~~~~---~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 46 VAAKALESMGISLDAVRQEVEEIIGQGS--Q--PTTGH---IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCCCS--C--CCCSC---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHhccCC--C--CCcCC---CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 3558999999999988888777665532 1 11111 248999999999999999999999999999999999998
Q ss_pred CchHHHHHHHcCCCHHHHHHHHHHHhh
Q 002068 120 NGLARRIFSKVGVDNTRLLEATEKFIQ 146 (973)
Q Consensus 120 ~~~~~~~L~~~gv~~~~l~~~~~~~~~ 146 (973)
++.+.++|+++||+.+.++..+...++
T Consensus 119 ~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 119 EGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp SSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 999999999999999999999887764
No 175
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.85 E-value=1.6e-09 Score=104.96 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=83.8
Q ss_pred chhhhhccccchhhhccCccccccccccccccCCCCCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCC
Q 002068 40 NFFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCEATSGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQK 119 (973)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~ 119 (973)
.+.++|...|++....+..++..+.+.- . +.+. -.||+.++++|+.|..+|+++|+.+|++||||+||+.++
T Consensus 47 ~~~~iL~~~gvd~~~l~~~l~~~l~~~~--~---~~~~---~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 47 IAAKVLSKVGFTEAYLEGKIVDMEGKGE--E---ISED---IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHCCCS--C---CCSC---CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHhcCC--C---CCCC---CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 3568999999999998888887776632 1 1111 249999999999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCHHHHHHHHHHHh
Q 002068 120 NGLARRIFSKVGVDNTRLLEATEKFI 145 (973)
Q Consensus 120 ~~~~~~~L~~~gv~~~~l~~~~~~~~ 145 (973)
++.+.++|+++||+.+.++..+...+
T Consensus 119 ~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 119 EGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 176
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.70 E-value=1.9e-08 Score=98.12 Aligned_cols=99 Identities=22% Similarity=0.230 Sum_probs=83.5
Q ss_pred hhhhhccccchhhhccCccccccccccccccCCCCCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCCC
Q 002068 41 FFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCEATSGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKN 120 (973)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~ 120 (973)
+.++|...|++....+..++..+.+.- .. .+. ..||+.++++|..|..+|+.+|+.+|++||||+||+.+++
T Consensus 46 ~~~iL~~~g~~~~~l~~~l~~~l~~~~--~~---~~~---~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~ 117 (150)
T 2y1q_A 46 AAKALQALGLGSEKIQKEVESLIGRAQ--EM---SQT---IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (150)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCCC----------C---CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccCC--cc---ccc---CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCC
Confidence 458999999999988888887766632 11 111 2599999999999999999999999999999999999888
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHhhc
Q 002068 121 GLARRIFSKVGVDNTRLLEATEKFIQR 147 (973)
Q Consensus 121 ~~~~~~L~~~gv~~~~l~~~~~~~~~~ 147 (973)
+.+.++|+.+||+.+.++..+....+.
T Consensus 118 ~~a~~~L~~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 118 GVAARVLNNLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 888899999999999999998887653
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.70 E-value=4.1e-08 Score=98.74 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=66.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc-CCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 759 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~-~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 759 (973)
+++|+||||||||+++++++..+. ..+..++.+++.++....... +.. .....+...+.. ..+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~--~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MDE-------GKDTKFLKTVLN--SPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HHH-------TCCSHHHHHHHT--CSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hcC-------chHHHHHHHhcC--CCEEEEeC
Confidence 699999999999999999999885 334466677776654321110 000 000123333333 45999999
Q ss_pred cc--ccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh
Q 002068 760 IE--KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (973)
Q Consensus 760 id--~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 803 (973)
++ .+++..+..|.++++... -.+..+|+|||...
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSL 144 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCS
T ss_pred CCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCCh
Confidence 98 567888888888886411 12456888999854
No 178
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.69 E-value=2.1e-08 Score=130.00 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=56.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh-------hhhhhcCCCCCcccccccchhhHHHHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH-------AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~-------~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~ 753 (973)
.+|++||||||||++|++++......+.+.+.++..+..+.. +.+++++..|.. +......+...++....+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~-~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT-GEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccc-hHHHHHHHHHHHHhcCCe
Confidence 599999999999999999997774446777777776644321 224444432211 111112445556678889
Q ss_pred EEEEccccccCHH
Q 002068 754 VILFDEIEKAHSD 766 (973)
Q Consensus 754 Vl~lDEid~l~~~ 766 (973)
++|+|+++.+.|.
T Consensus 1163 ~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1163 VIVVDSVAALTPK 1175 (1706)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEeCchHhcCcc
Confidence 9999999876544
No 179
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.69 E-value=1.1e-07 Score=107.27 Aligned_cols=202 Identities=15% Similarity=0.095 Sum_probs=110.9
Q ss_pred CCCCCCchHHHHHHHHHhccCC-----CCCceEECCCCCcHHHHHHHH-HHHHhcCCCCcccCCCeEEEEEccc----cc
Q 002068 254 LDPVIGRDDEIRRCIQILSRRT-----KNNPVLIGEPGVGKTAISEGL-AQRIVQGDVPQALMNRKLISLDMGA----LI 323 (973)
Q Consensus 254 l~~iiG~~~~i~~li~~l~~~~-----~~~~LL~GppG~GKT~la~~l-a~~l~~~~~p~~l~~~~~~~l~~~~----~~ 323 (973)
+.+++|++...+.++-.|..+. .-|+||+|+||| ||.+|+++ ++.+ ...++..+... +.
T Consensus 212 IapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~----------pR~~ft~g~~ss~~gLt 280 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA----------PRGVYVDLRRTELTDLT 280 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC----------SSEEEEEGGGCCHHHHS
T ss_pred hcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC----------CCeEEecCCCCCccCce
Confidence 4459999886544444443321 238999999999 99999999 6654 11222211110 11
Q ss_pred ccccccch--HHHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC-----------CEEEEEc
Q 002068 324 AGAKYRGE--FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------ELRCIGA 390 (973)
Q Consensus 324 ~g~~~~g~--~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------~i~iI~a 390 (973)
+. ..+. +.-+ ...+.. ..++|+||||++.+. ...+..|+..|+.+ ++.+|+|
T Consensus 281 ~s--~r~~tG~~~~-~G~l~L----AdgGvl~lDEIn~~~--------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA 345 (506)
T 3f8t_A 281 AV--LKEDRGWALR-AGAAVL----ADGGILAVDHLEGAP--------EPHRWALMEAMDKGTVTVDGIALNARCAVLAA 345 (506)
T ss_dssp EE--EEESSSEEEE-ECHHHH----TTTSEEEEECCTTCC--------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEE
T ss_pred EE--EEcCCCcccC-CCeeEE----cCCCeeehHhhhhCC--------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEE
Confidence 00 0000 0000 001111 235699999999987 55777888888754 5779999
Q ss_pred cCchHHH------hhhccCHHHHccCceE--EecCCCHHHH---------HHHHHHHHHHHh-hhcCCccCHHHHHHHHH
Q 002068 391 TTLDEYR------KYIEKDPALERRFQQV--YVDQPNVEDT---------ISILRGLRERYE-LHHGVRISDSALVEAAI 452 (973)
Q Consensus 391 t~~~~~~------~~~~~d~al~~Rf~~i--~~~~p~~~e~---------~~il~~~~~~~~-~~~~v~i~~~~l~~l~~ 452 (973)
+|+.+.. ..+.+++++++||+.+ .++.|+.++- .+.++.+..... ....+.+++++.+++++
T Consensus 346 ~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 346 INPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp ECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred eCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 9987511 1247899999999843 4455554331 122222222211 13367788888887776
Q ss_pred hccc------------ccCCCCCchHHHHHHHHHHhhhhhh
Q 002068 453 LSDR------------YISGRFLPDKAIDLVDEAAAKLKME 481 (973)
Q Consensus 453 ~s~~------------~i~~r~~p~~a~~lld~a~~~~~~~ 481 (973)
+... +......|.....++..|-+.++++
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~ 466 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR 466 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc
Confidence 5321 1222344555666666665555554
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.65 E-value=2.6e-08 Score=102.23 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=67.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
+++|+||||||||++|+++++.+...+.+++.+++.++..... ..+.. + ....+.+.+... .+|+|||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-----~~~~~~~~~~~~--~~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK--HSLQD--Q-----TMNEKLDYIKKV--PVLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH--HC-----C-----CCHHHHHHHHHS--SEEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH--HHhcc--c-----hHHHHHHHhcCC--CEEEEcCC
Confidence 7999999999999999999999976677888888877643211 10110 0 012334445544 49999999
Q ss_pred cccC--HHHHHHHH-HhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 761 EKAH--SDVFNVFL-QILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 761 d~l~--~~v~~~Ll-~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
+..+ +..+..|+ .+++... ..+..+|+|||...+.+..
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHHHH
Confidence 7644 33344333 3554210 1234589999987665543
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.63 E-value=5.2e-08 Score=99.93 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=62.3
Q ss_pred HHHhcCCCCCCCCchH----HHHHHHHHhccCC----CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 247 AMASAGKLDPVIGRDD----EIRRCIQILSRRT----KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 247 ~~~~~~~l~~iiG~~~----~i~~li~~l~~~~----~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
..+++.+|+++++.+. .++.+...+.... +.+++|+||||||||+++++++..+... +.+++.++
T Consensus 17 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~ 89 (202)
T 2w58_A 17 REILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVY 89 (202)
T ss_dssp GGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred HHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEE
Confidence 4456778999998653 3344444443331 2689999999999999999999998543 45677777
Q ss_pred ccccccccc--c-cchHHHHHHHHHHHHHHhCCCeEEEEccccccc
Q 002068 319 MGALIAGAK--Y-RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV 361 (973)
Q Consensus 319 ~~~~~~g~~--~-~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~ 361 (973)
+..+..... + .+. +..+++.+.. ..+|||||++...
T Consensus 90 ~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~lilDei~~~~ 128 (202)
T 2w58_A 90 VPELFRELKHSLQDQT----MNEKLDYIKK---VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHC---CC----CHHHHHHHHH---SSEEEEEEECCC-
T ss_pred hHHHHHHHHHHhccch----HHHHHHHhcC---CCEEEEcCCCCCc
Confidence 665432100 0 011 1223333332 2399999997654
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.55 E-value=2.5e-08 Score=100.29 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHhcCCCCCCCCchH----HHHHHHHHhc---cCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 248 MASAGKLDPVIGRDD----EIRRCIQILS---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 248 ~~~~~~l~~iiG~~~----~i~~li~~l~---~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
++++.+|+++++.+. .++.+.+.+. .....+++|+||||||||+++++++..+... .+..++.+++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEHH
Confidence 467788999987433 3333333332 2335678999999999999999999998421 13345555554
Q ss_pred cccccccccchHHH-HHHHHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchH
Q 002068 321 ALIAGAKYRGEFED-RLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 395 (973)
Q Consensus 321 ~~~~g~~~~g~~e~-~l~~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~ 395 (973)
.+.... ...... ....++..+. .+.+|+|||++..... ........+++....+.+ ..+|.+||...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~llilDE~~~~~~~--~~~~~~l~~ll~~~~~~~-~~ii~tsn~~~ 144 (180)
T 3ec2_A 77 DLIFRL--KHLMDEGKDTKFLKTVL---NSPVLVLDDLGSERLS--DWQRELISYIITYRYNNL-KSTIITTNYSL 144 (180)
T ss_dssp HHHHHH--HHHHHHTCCSHHHHHHH---TCSEEEEETCSSSCCC--HHHHHHHHHHHHHHHHTT-CEEEEECCCCS
T ss_pred HHHHHH--HHHhcCchHHHHHHHhc---CCCEEEEeCCCCCcCC--HHHHHHHHHHHHHHHHcC-CCEEEEcCCCh
Confidence 443110 000000 0001222222 3569999999853211 001112223333333344 56666777653
No 183
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.54 E-value=5e-08 Score=127.71 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=54.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCC-------cccccccchhhHHHHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-------YVGYEEGGQLTEVVRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g-------~~g~~~~~~l~~~~~~~~~~ 753 (973)
+++|+||||||||+||.+++......+.....+++.+...... .+-+|..-. +.+......+...++....+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 7999999999999999999988876677888888876544333 222341100 01111112334455567789
Q ss_pred EEEEccccccC
Q 002068 754 VILFDEIEKAH 764 (973)
Q Consensus 754 Vl~lDEid~l~ 764 (973)
+||||+++.+.
T Consensus 1508 lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1508 VIVVDSVAALT 1518 (2050)
T ss_dssp EEEESCGGGCC
T ss_pred EEEEcChhHhc
Confidence 99999997544
No 184
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.53 E-value=7.9e-08 Score=93.46 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
.++|+||+|+|||+|+++++..+...+...++++..++... . .+. ...+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~---~~~--~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------D---AAF--EAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------G---GGG--GCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------H---HHh--CCCEEEEeCc
Confidence 69999999999999999999988654445677776655321 0 111 2359999999
Q ss_pred cccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh
Q 002068 761 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (973)
Q Consensus 761 d~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~ 803 (973)
+.+.+..+..|+++++.-. .-..+++|+|||..+
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p 126 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTP 126 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCT
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCH
Confidence 9998777888888886411 111234677888644
No 185
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.53 E-value=8.1e-08 Score=92.73 Aligned_cols=99 Identities=11% Similarity=0.006 Sum_probs=80.8
Q ss_pred chhhhhccccchhhhccCccccccccccccccC-CC-CCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHc
Q 002068 40 NFFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCE-AT-SGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLE 117 (973)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~-~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~ 117 (973)
.+.++|...|++....+..++..+.+.. .... .+ .+. -.||+.+.++|+.|..+|+.+|+.+|++||||+||+.
T Consensus 39 ~~~~iL~~~g~~~~~l~~~l~~~l~~~~-p~~~~~~~~~~---~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 39 SAREALEACSVDLVALRQELEAFIEQTT-PVLPASEEERD---TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHS-CBCCSSCSCCS---CEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhcC-CCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3668999999999998888887766631 1111 11 111 1589999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHH
Q 002068 118 QKNGLARRIFSKVGVDNTRLLEATE 142 (973)
Q Consensus 118 ~~~~~~~~~L~~~gv~~~~l~~~~~ 142 (973)
++++.+.++|+++||+.+.++..+.
T Consensus 115 ~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 115 EQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp CTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 8888889999999999999987664
No 186
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=8.3e-08 Score=93.29 Aligned_cols=120 Identities=10% Similarity=0.114 Sum_probs=73.3
Q ss_pred CCchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHH
Q 002068 258 IGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLK 337 (973)
Q Consensus 258 iG~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~ 337 (973)
+|.+.+.-..+..+ ...+++|+||+|+|||+|+++++..+.. .+..++.++...+...
T Consensus 21 ~g~n~~~~~~l~~~---~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~------------ 78 (149)
T 2kjq_A 21 GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT------------ 78 (149)
T ss_dssp SCCTHHHHHHCCCC---CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC------------
T ss_pred cCccHHHHHHHHhc---CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH------------
Confidence 45554443333322 4456889999999999999999998853 2556777776655421
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc
Q 002068 338 AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ 411 (973)
Q Consensus 338 ~~~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~ 411 (973)
. .. ..+.+|+|||++.+.... ...+.+++....++|..++|.+|+..+. ..-.. +.+.+||.
T Consensus 79 ~----~~--~~~~lLilDE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p~-~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 79 D----AA--FEAEYLAVDQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTPQ-QLVIR-EDLRTRMA 140 (149)
T ss_dssp G----GG--GGCSEEEEESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCTT-TSSCC-HHHHHHGG
T ss_pred H----HH--hCCCEEEEeCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCHH-Hcccc-HHHHHHHh
Confidence 0 11 134599999998865321 2334455555556666534555554321 11123 89999995
No 187
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.49 E-value=1.2e-07 Score=92.11 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=78.6
Q ss_pred chhhhhccccchhhhccCccccccccccccccCCCCCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCC
Q 002068 40 NFFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCEATSGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQK 119 (973)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~ 119 (973)
.+.++|...|++....+..++..+.+.- ....+.+. -.||+.+.++|..|..+|+.+|+.+|++||||+||+ ++
T Consensus 45 ~~~~iL~~~g~~~~~l~~~l~~~l~~~p--~~~~~~~~---~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~ 118 (148)
T 1khy_A 45 SVSPLLTSAGINAGQLRTDINQALNRLP--QVEGTGGD---VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ES 118 (148)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHTTSC--CC----------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TS
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhCC--CCCCCCCC---cCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cC
Confidence 3458999999999998888887776632 11111111 148999999999999999999999999999999999 55
Q ss_pred CchHHHHHHHcCCCHHHHHHHHHHH
Q 002068 120 NGLARRIFSKVGVDNTRLLEATEKF 144 (973)
Q Consensus 120 ~~~~~~~L~~~gv~~~~l~~~~~~~ 144 (973)
++.+.++|..+|++.+.++..+...
T Consensus 119 ~~~~~~~L~~~gi~~~~l~~~l~~~ 143 (148)
T 1khy_A 119 RGTLADILKAAGATTANITQAIEQM 143 (148)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHC-
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7788999999999999998877544
No 188
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.43 E-value=1.6e-07 Score=102.95 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc-CCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEcc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 759 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~-~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDE 759 (973)
+++|+||||||||+||.++++.+. ..+.+++.++++++... +.+.... + ....+...+... .||||||
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~~--~--~~~~~~~~~~~~--~lLiiDd 222 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAISN--G--SVKEEIDAVKNV--PVLILDD 222 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC--------CCTTHHHHTS--SEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhcc--c--hHHHHHHHhcCC--CEEEEcC
Confidence 799999999999999999999987 66677888888766432 1111100 0 012334445554 4999999
Q ss_pred cccc--CHHHHHHHH-HhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhc
Q 002068 760 IEKA--HSDVFNVFL-QILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (973)
Q Consensus 760 id~l--~~~v~~~Ll-~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~ 808 (973)
++.. ++..++.|+ .+++... ..+..+|+|||...+.+..
T Consensus 223 ig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 223 IGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADLER 264 (308)
T ss_dssp CCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH
Confidence 9654 333344333 3554311 1234589999997766654
No 189
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.42 E-value=3.3e-06 Score=93.97 Aligned_cols=165 Identities=15% Similarity=0.239 Sum_probs=100.8
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc------chh
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------EKH 722 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------~~~ 722 (973)
..++|.+..++.|...+.. + ..++++||+|+|||++++.+++.. + .+.++|.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 4688999999998887763 1 169999999999999999999876 2 7778876542 111
Q ss_pred h----hhhhcCC-----------------CCCcccccccchhhHHHH----hCCCeEEEEccccccCH-------HHHHH
Q 002068 723 A----VSRLIGA-----------------PPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHS-------DVFNV 770 (973)
Q Consensus 723 ~----~~~l~G~-----------------~~g~~g~~~~~~l~~~~~----~~~~~Vl~lDEid~l~~-------~v~~~ 770 (973)
. +...++. .... .......+...+. ...+.||+|||++.+.. ++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 1 1111111 0000 0011112233332 12368999999999764 66777
Q ss_pred HHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHH--hccChhhhcccceEEE
Q 002068 771 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR--SIFRPEFMNRVDEYIV 848 (973)
Q Consensus 771 Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~f~p~ll~R~d~~i~ 848 (973)
|..+++. ..++.+|+|+.... .+ ..+. ......+.+|....+.
T Consensus 155 L~~~~~~------------~~~~~~il~g~~~~-~l----------------------~~~l~~~~~~~~l~~~~~~~i~ 199 (350)
T 2qen_A 155 FAYAYDS------------LPNLKIILTGSEVG-LL----------------------HDFLKITDYESPLYGRIAGEVL 199 (350)
T ss_dssp HHHHHHH------------CTTEEEEEEESSHH-HH----------------------HHHHCTTCTTSTTTTCCCEEEE
T ss_pred HHHHHHh------------cCCeEEEEECCcHH-HH----------------------HHHHhhcCCCCccccCccceee
Confidence 7666653 13566777765411 00 0000 1123346677767899
Q ss_pred cCCCCHHHHHHHHHHHH
Q 002068 849 FQPLDRDQISSIVRLQL 865 (973)
Q Consensus 849 f~~l~~~~l~~I~~~~l 865 (973)
+.|++.++..+++...+
T Consensus 200 l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 200 VKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887654
No 190
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.41 E-value=1.1e-06 Score=97.99 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=113.5
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHH---hCCCe
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQI 350 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~---~~~~~ 350 (973)
+..+..||+||+|+||++.++.+++.+.+.+.. ...++.++ +. . .++.+++.+.. .++.-
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~----~~~~l~~~~~~~plf~~~k 78 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---T----DWNAIFSLCQAMSLFASRQ 78 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---C----CHHHHHHHHHHHHHCCSCE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---C----CHHHHHHHhcCcCCccCCe
Confidence 455567899999999999999999987543210 11222222 11 1 23445544432 34567
Q ss_pred EEEEccccc-cccCCCCCchhhHHHHHhhhhcC--CCEEEEEccCc-hHHHhhhccCHHHHccCceEEecCCCHHHHHHH
Q 002068 351 ILFIDEIHT-VVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTL-DEYRKYIEKDPALERRFQQVYVDQPNVEDTISI 426 (973)
Q Consensus 351 ILfiDEi~~-l~~~~~~~~~~~~~~~L~~~l~~--g~i~iI~at~~-~~~~~~~~~d~al~~Rf~~i~~~~p~~~e~~~i 426 (973)
|++|||+|. +. .+..+.|..+++. ..+++|.+|+. +.-.+...+.+++.+|+..+.+.+++.++....
T Consensus 79 vvii~~~~~kl~--------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 79 TLLLLLPENGPN--------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp EEEEECCSSCCC--------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred EEEEECCCCCCC--------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 999999998 75 3467778888875 35555555543 221111234588999999999999999998888
Q ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHhcccccCCCCCchHHHHHHHHHHhh
Q 002068 427 LRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (973)
Q Consensus 427 l~~~~~~~~~~~~v~i~~~~l~~l~~~s~~~i~~r~~p~~a~~lld~a~~~ 477 (973)
++..+. ..++.++++++..++..+.+- ...+...++..+..
T Consensus 151 l~~~~~----~~g~~i~~~a~~~l~~~~~gd------l~~~~~elekl~l~ 191 (343)
T 1jr3_D 151 VAARAK----QLNLELDDAANQVLCYCYEGN------LLALAQALERLSLL 191 (343)
T ss_dssp HHHHHH----HTTCEECHHHHHHHHHSSTTC------HHHHHHHHHHHHHH
T ss_pred HHHHHH----HcCCCCCHHHHHHHHHHhchH------HHHHHHHHHHHHHh
Confidence 877776 478999999999999988632 33566666665543
No 191
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.35 E-value=2.1e-06 Score=95.72 Aligned_cols=160 Identities=13% Similarity=0.169 Sum_probs=108.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCC-cce--EEeccccccchhhhhhhcCCCCCcccccccchhhHHHH----hCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTE-EAL--VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~-~~~--~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~ 753 (973)
.+||+||+|+||++.++.|++.+.+.+ .++ +.++. + .+...+.+.+. -..+.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--------------------~~~~~l~~~~~~~plf~~~k 78 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-N--------------------TDWNAIFSLCQAMSLFASRQ 78 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-T--------------------CCHHHHHHHHHHHHHCCSCE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-C--------------------CCHHHHHHHhcCcCCccCCe
Confidence 699999999999999999999874322 121 12221 0 11123333333 24567
Q ss_pred EEEEccccc-cCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecC-CChhhhhccCCCCCCccchHHHHHHHHHHHH
Q 002068 754 VILFDEIEK-AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN-VGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (973)
Q Consensus 754 Vl~lDEid~-l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 831 (973)
|++|||++. +..+.++.|+..+++ ...+++||++++ .+... .
T Consensus 79 vvii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~----------~--------------- 122 (343)
T 1jr3_D 79 TLLLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQ----------E--------------- 122 (343)
T ss_dssp EEEEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTT----------T---------------
T ss_pred EEEEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhh----------H---------------
Confidence 999999999 999999999999986 234667666654 31100 0
Q ss_pred HhccChhhhcccceEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceecCHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 002068 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQY 910 (973)
Q Consensus 832 ~~~f~p~ll~R~d~~i~f~~l~~~~l~~I~~~~l~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~ 910 (973)
...+.+.+.+|+ .++.|.+++.+++...+...+.. . .+.++++++++|++.. . .+.|.+.+.++++
T Consensus 123 ~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~-------~--g~~i~~~a~~~l~~~~-~--gdl~~~~~elekl 188 (343)
T 1jr3_D 123 NAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQ-------L--NLELDDAANQVLCYCY-E--GNLLALAQALERL 188 (343)
T ss_dssp TSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHH-------T--TCEECHHHHHHHHHSS-T--TCHHHHHHHHHHH
T ss_pred hhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHh-c--hHHHHHHHHHHHH
Confidence 122445678898 78999999999999888877643 4 4679999999999853 2 2356666666653
No 192
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.34 E-value=8.8e-07 Score=93.51 Aligned_cols=132 Identities=18% Similarity=0.265 Sum_probs=78.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCC-eEEEEcc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPY-AVILFDE 759 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~-~Vl~lDE 759 (973)
+++|+||||||||++|.+||+.+. -...++.+ .. .+. +..... .|++.||
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~----l~G~vn~~---~~-----------~f~-----------l~~~~~k~i~l~Ee 156 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVP----FYGCVNWT---NE-----------NFP-----------FNDCVDKMVIWWEE 156 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS----CEEECCTT---CS-----------SCT-----------TGGGSSCSEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc----ccceeecc---cc-----------ccc-----------cccccccEEEEecc
Confidence 699999999999999999999751 01122211 10 010 011111 2666666
Q ss_pred ccccCHHHHHHHHHhhcCCeEecCC--CcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHHhccCh
Q 002068 760 IEKAHSDVFNVFLQILDDGRVTDSQ--GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 837 (973)
Q Consensus 760 id~l~~~v~~~Ll~~le~g~~~~~~--g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~p 837 (973)
.... .+.++.+..+++.+.+.... ........+-+|+|||.+.......+... ....+
T Consensus 157 ~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s-------------------~~~~~ 216 (267)
T 1u0j_A 157 GKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT-------------------FEHQQ 216 (267)
T ss_dssp CCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE-------------------CTTHH
T ss_pred ccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc-------------------hhhhH
Confidence 6554 45667788888766555322 22334466779999998543322111000 01234
Q ss_pred hhhcccceEEEcC--------CCCHHHHHHHHH
Q 002068 838 EFMNRVDEYIVFQ--------PLDRDQISSIVR 862 (973)
Q Consensus 838 ~ll~R~d~~i~f~--------~l~~~~l~~I~~ 862 (973)
.|.+|+ .++.|. +++.+++...+.
T Consensus 217 ~L~sR~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 217 PLQDRM-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHTTE-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HHhhhE-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 688898 788888 899999888877
No 193
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.29 E-value=1.5e-06 Score=87.48 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=54.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
++||+||||||||++|.+|++.+.+ .++.+..+. ..+. ...+. ...+++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g---~i~~fans~--------------s~f~--------l~~l~--~~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG---AVISFVNST--------------SHFW--------LEPLT--DTKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC---EECCCCCSS--------------SCGG--------GGGGT--TCSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeeeEEecc--------------chhh--------hcccC--CCCEEEEECC
Confidence 6999999999999999999999843 222111100 0000 00011 1249999999
Q ss_pred cccCHH-HHHHHHHhhcCCeEec-CC-CcEEeccCEEEEEecCCCh
Q 002068 761 EKAHSD-VFNVFLQILDDGRVTD-SQ-GRTVSFTNTVIIMTSNVGS 803 (973)
Q Consensus 761 d~l~~~-v~~~Ll~~le~g~~~~-~~-g~~v~~~~~iiI~tsN~~~ 803 (973)
+...-. ....+..+|+...+.. .. ...+.....-+|+|||...
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~ 158 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHP 158 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCT
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCc
Confidence 865433 3456777777543222 11 1112222345899999854
No 194
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=4.6e-06 Score=92.96 Aligned_cols=168 Identities=13% Similarity=0.229 Sum_probs=99.7
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc-----chhh
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM-----EKHA 723 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~-----~~~~ 723 (973)
..++|.+..+..|.. +.. + .++++||+|+|||++++.+++.+ ....+.+++..+. ....
T Consensus 13 ~~~~gR~~el~~L~~-l~~----------~--~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA----------P--ITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS----------S--EEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC----------C--cEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 467898888777765 431 2 69999999999999999999887 3456788876541 1111
Q ss_pred h----hh--------------hcCCCCC----ccc---------ccccchhhHHHHhC--CCeEEEEccccccCH----H
Q 002068 724 V----SR--------------LIGAPPG----YVG---------YEEGGQLTEVVRRR--PYAVILFDEIEKAHS----D 766 (973)
Q Consensus 724 ~----~~--------------l~G~~~g----~~g---------~~~~~~l~~~~~~~--~~~Vl~lDEid~l~~----~ 766 (973)
. .. +++...+ ..+ ......+...+... .+.||+|||++.+.. +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0 00 1111000 000 01112344445443 367999999999853 4
Q ss_pred HHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhhhccCCCCCCccchHHHHHHHHHHHHH-hccChhhhcccce
Q 002068 767 VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR-SIFRPEFMNRVDE 845 (973)
Q Consensus 767 v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~R~d~ 845 (973)
+...|..+++. ..++.+|+|++... .+.+ .+. ......+.+|+..
T Consensus 157 ~~~~l~~~~~~------------~~~~~~i~~g~~~~-~l~~---------------------~l~~~~~~~~l~~r~~~ 202 (357)
T 2fna_A 157 LLPALAYAYDN------------LKRIKFIMSGSEMG-LLYD---------------------YLRVEDPESPLFGRAFS 202 (357)
T ss_dssp CHHHHHHHHHH------------CTTEEEEEEESSHH-HHHH---------------------HTTTTCTTSTTTTCCCE
T ss_pred HHHHHHHHHHc------------CCCeEEEEEcCchH-HHHH---------------------HHhccCCCCccccCccc
Confidence 55555555543 13566777776511 0000 000 1122346677767
Q ss_pred EEEcCCCCHHHHHHHHHHHHH
Q 002068 846 YIVFQPLDRDQISSIVRLQLD 866 (973)
Q Consensus 846 ~i~f~~l~~~~l~~I~~~~l~ 866 (973)
.+.+.|++.++..+++...+.
T Consensus 203 ~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp EEEECCCCHHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHH
Confidence 899999999999998887553
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.25 E-value=1e-06 Score=96.58 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=57.6
Q ss_pred HhcCCCCCCCCch----HHHHHHHHHhccC---CCCCceEECCCCCcHHHHHHHHHHHHh-cCCCCcccCCCeEEEEEcc
Q 002068 249 ASAGKLDPVIGRD----DEIRRCIQILSRR---TKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 249 ~~~~~l~~iiG~~----~~i~~li~~l~~~---~~~~~LL~GppG~GKT~la~~la~~l~-~~~~p~~l~~~~~~~l~~~ 320 (973)
+++.+|+++++.+ ..+..+.+.+... ...+++|+||||||||+||.+++..+. .. +.+++.+++.
T Consensus 118 ~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~ 190 (308)
T 2qgz_A 118 YRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFP 190 (308)
T ss_dssp GGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHH
T ss_pred HHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHH
Confidence 3455677777643 2333333444332 256899999999999999999999985 33 4567777765
Q ss_pred cccccccc-cchHHHHHHHHHHHHHHhCCCeEEEEccccccc
Q 002068 321 ALIAGAKY-RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV 361 (973)
Q Consensus 321 ~~~~g~~~-~g~~e~~l~~~~~~~~~~~~~~ILfiDEi~~l~ 361 (973)
.+...... .+ ...+...+..+.. ..+|||||++...
T Consensus 191 ~l~~~l~~~~~--~~~~~~~~~~~~~---~~lLiiDdig~~~ 227 (308)
T 2qgz_A 191 SFAIDVKNAIS--NGSVKEEIDAVKN---VPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHCCCC------CCTTHHHHT---SSEEEEETCCC--
T ss_pred HHHHHHHHHhc--cchHHHHHHHhcC---CCEEEEcCCCCCC
Confidence 54321100 00 0011122333322 3499999996553
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.24 E-value=1.2e-06 Score=88.15 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=68.9
Q ss_pred HHHHHHHhccCC-CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHH
Q 002068 264 IRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKE 342 (973)
Q Consensus 264 i~~li~~l~~~~-~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~ 342 (973)
+..+...+...+ ++++||+||||||||++|.++++.+ ..+++.+.-+. ..+ . +..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l----------~g~i~~fans~----s~f----~------l~~ 100 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI----------QGAVISFVNST----SHF----W------LEP 100 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH----------TCEECCCCCSS----SCG----G------GGG
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh----------CCCeeeEEecc----chh----h------hcc
Confidence 334444443322 3569999999999999999999998 22332221000 000 0 011
Q ss_pred HHHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCC---------------CEEEEEccCchHHHhhhccCHHHH
Q 002068 343 VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 343 ~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------~i~iI~at~~~~~~~~~~~d~al~ 407 (973)
+ .+..|++|||++.-. ...+...++.+++.. ...+|.|||.+-.. -..-+.|.
T Consensus 101 l---~~~kIiiLDEad~~~-------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~L~ 168 (212)
T 1tue_A 101 L---TDTKVAMLDDATTTC-------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPYLE 168 (212)
T ss_dssp G---TTCSSEEEEEECHHH-------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHHHH
T ss_pred c---CCCCEEEEECCCchh-------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhhhh
Confidence 1 123488999997432 122334555555432 24678888875321 12337899
Q ss_pred ccCceEEecCCC
Q 002068 408 RRFQQVYVDQPN 419 (973)
Q Consensus 408 ~Rf~~i~~~~p~ 419 (973)
+|+..+.|+.|-
T Consensus 169 SRi~~f~F~~~~ 180 (212)
T 1tue_A 169 SRITVFEFPNAF 180 (212)
T ss_dssp TSCEEEECCSCC
T ss_pred hhEEEEEcCCCC
Confidence 999988888763
No 197
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.19 E-value=3e-06 Score=86.28 Aligned_cols=132 Identities=15% Similarity=0.098 Sum_probs=72.1
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCC-CeEEEEEccccccccc-----------ccch--HHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN-RKLISLDMGALIAGAK-----------YRGE--FEDRLKAVLKEV 343 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~-~~~~~l~~~~~~~g~~-----------~~g~--~e~~l~~~~~~~ 343 (973)
-.|++|+||+|||++|..++.....-+ +. -.+ .+++..++..+..+.- ..++ ....+...+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh--
Confidence 458999999999999987655531000 00 124 5666666554432110 0011 0111222111
Q ss_pred HHhCCCeEEEEccccccccCCC-CCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCC
Q 002068 344 TESEGQIILFIDEIHTVVGAGA-TNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPN 419 (973)
Q Consensus 344 ~~~~~~~ILfiDEi~~l~~~~~-~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~ 419 (973)
...+.++||+|||+|.+.+.+. ..........|.. .....+.+|.+|++.. .++.++++|+. .+.+..|.
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~-~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNT-HRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGG-TTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred ccccCceEEEEEChhhhccCccccchhHHHHHHHHh-cCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 0123478999999999975442 1112222221211 1233567788888864 68999999997 57777653
No 198
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.18 E-value=6.7e-06 Score=81.28 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHHHHHHHHhCCCccChhHHHHHhhccc-ccccchhhccCCChhHHHHHHHHHhc
Q 002068 159 MLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRG 222 (973)
Q Consensus 159 ~~s~~~~~~l~~A~~~a~~~g~~~I~~~hlllall~~~-~~~~~~L~~~gi~~~~l~~~i~~~~~ 222 (973)
.||+.++++|+.|..+|+.+|+.+|+++|||+||++++ +.+.++|+++|++.+.+++.+. ...
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~ 87 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STY 87 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHS
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHh
Confidence 58999999999999999999999999999999999876 8888999999999999999988 554
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.02 E-value=2.7e-05 Score=77.85 Aligned_cols=23 Identities=39% Similarity=0.843 Sum_probs=21.2
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
++.|+||+|+|||||++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999987
No 200
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.96 E-value=7.1e-06 Score=88.64 Aligned_cols=104 Identities=21% Similarity=0.415 Sum_probs=59.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEI 357 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi 357 (973)
.++|+||||||||+||..++... .+ .+.++.+...+.... +..+.+..+..+.+.+... + +||||++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~-------~VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~--~-LLVIDsI 191 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GG-------KDKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQH--R-VIVIDSL 191 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HT-------TSCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHC--S-EEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CC-------CEEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhC--C-EEEEecc
Confidence 46899999999999999999861 11 233555522222211 2245566666666666543 3 9999999
Q ss_pred cccccCCCCC---c--hhhHHHH---HhhhhcCCCEEEEEccCch
Q 002068 358 HTVVGAGATN---G--AMDAGNL---LKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 358 ~~l~~~~~~~---~--~~~~~~~---L~~~l~~g~i~iI~at~~~ 394 (973)
+.+....... + ....... |..++.+.++.+|+++|..
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 9986433220 1 1222233 3333344567788888754
No 201
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.90 E-value=3.5e-05 Score=81.27 Aligned_cols=124 Identities=15% Similarity=0.280 Sum_probs=70.8
Q ss_pred HHHHhccC-C-CCCceEECCCCCcHHHHHHHHHHHHh-cCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHH
Q 002068 267 CIQILSRR-T-KNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 343 (973)
Q Consensus 267 li~~l~~~-~-~~~~LL~GppG~GKT~la~~la~~l~-~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~ 343 (973)
+...+.+. + +++++|+||||||||.+|.+||..+. -|. ++.+. ..+ .+..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~------------vn~~~----~~f----------~l~~~ 146 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGC------------VNWTN----ENF----------PFNDC 146 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEE------------CCTTC----SSC----------TTGGG
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccce------------eeccc----ccc----------ccccc
Confidence 44445444 3 45699999999999999999999751 111 11110 000 11111
Q ss_pred HHhCCCeEEEEccccccccCCCCCchhhHHHHHhhhhc--------C-------CCEEEEEccCchHHHh------hhcc
Q 002068 344 TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--------R-------GELRCIGATTLDEYRK------YIEK 402 (973)
Q Consensus 344 ~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~--------~-------g~i~iI~at~~~~~~~------~~~~ 402 (973)
....|++.||..... ++.+.++.+++ + ....+|.+||.+...- ....
T Consensus 147 ---~~k~i~l~Ee~~~~~---------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~ 214 (267)
T 1u0j_A 147 ---VDKMVIWWEEGKMTA---------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEH 214 (267)
T ss_dssp ---SSCSEEEECSCCEET---------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTT
T ss_pred ---cccEEEEeccccchh---------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhh
Confidence 233466677766543 23344555554 1 2446788888743210 0134
Q ss_pred CHHHHccCceEEec--------CCCHHHHHHHHH
Q 002068 403 DPALERRFQQVYVD--------QPNVEDTISILR 428 (973)
Q Consensus 403 d~al~~Rf~~i~~~--------~p~~~e~~~il~ 428 (973)
.++|++|+..+.|. +.+.++....++
T Consensus 215 ~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 215 QQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred hHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 48899999888888 455666555554
No 202
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.85 E-value=3.8e-05 Score=78.10 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=46.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc-----CCC-cceEEeccccccchhhh--hhhcCCCCCccccc-ccchhhHHH--Hh
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF-----NTE-EALVRIDMSEYMEKHAV--SRLIGAPPGYVGYE-EGGQLTEVV--RR 749 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~-----~~~-~~~~~i~~~~~~~~~~~--~~l~G~~~g~~g~~-~~~~l~~~~--~~ 749 (973)
..|++|+||+|||++|..+..... ..+ .+++..++.++...+.. +... ......... ....+.+.+ ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAK-KLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTT-TCSSCCSSCEEGGGHHHHTTSGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhh-hccccCcccccHHHHHHHhhccc
Confidence 588999999999999988765542 334 66666777665432210 0000 000000000 012333332 34
Q ss_pred CCCeEEEEcccccc
Q 002068 750 RPYAVILFDEIEKA 763 (973)
Q Consensus 750 ~~~~Vl~lDEid~l 763 (973)
..++||+|||++.+
T Consensus 86 ~~~~vliIDEAq~l 99 (199)
T 2r2a_A 86 NIGSIVIVDEAQDV 99 (199)
T ss_dssp GTTCEEEETTGGGT
T ss_pred cCceEEEEEChhhh
Confidence 45789999999998
No 203
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.85 E-value=0.00016 Score=86.60 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=39.6
Q ss_pred cCCCCCCCCchHHHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHH
Q 002068 251 AGKLDPVIGRDDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 251 ~~~l~~iiG~~~~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~ 299 (973)
|.....+|||+.++.++.+.|... ...-++++||+|+|||+||..+++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 445567999999999999998642 3345689999999999999998753
No 204
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.81 E-value=1.9e-05 Score=79.46 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=50.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc---ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE---YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~---~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
..+++||+|+|||+++..++..+...+.+.+.+.... +.. ..+....|.............+.+.+. .+..+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~-~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHS-TMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CC-CEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCc-ccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 4789999999999998655554433334443332210 100 001111121111111111112222222 24679999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q 002068 758 DEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~ 777 (973)
||++.+++++++.|..+.+.
T Consensus 83 DE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHHHC
Confidence 99999988888888888875
No 205
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=4.5e-05 Score=88.39 Aligned_cols=62 Identities=13% Similarity=0.308 Sum_probs=42.5
Q ss_pred hhhcHHHHHhcCCCCCCC-CchHHHHHHHHHhccCCCCCceEECCCCCcHHHHHHHHHHHHhcC
Q 002068 241 YGKDLTAMASAGKLDPVI-GRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG 303 (973)
Q Consensus 241 ~~~~l~~~~~~~~l~~ii-G~~~~i~~li~~l~~~~~~~~LL~GppG~GKT~la~~la~~l~~~ 303 (973)
...+|.++|+|..|+.+- +|...+..++..+.... .++++.|+||||||+++..++..+...
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 345789999999999887 67778888887765544 488999999999999999999998654
No 206
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.71 E-value=0.00011 Score=75.31 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=82.3
Q ss_pred ceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC---CCCccccc---cc-chhhHHHHhCC
Q 002068 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA---PPGYVGYE---EG-GQLTEVVRRRP 751 (973)
Q Consensus 679 ~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~---~~g~~g~~---~~-~~l~~~~~~~~ 751 (973)
..+++|.|+||||||+++-.+|..+...+..++.+++...........+-|- ++..+.+. .. ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 3479999999999999999999888665666666666442222222222221 11111111 01 233343443 4
Q ss_pred CeEEEEccccccCH------HHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCCh-hhhhccCCCCCCccchHHHHH
Q 002068 752 YAVILFDEIEKAHS------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS-QYILNMDDETFPKETAYETIK 824 (973)
Q Consensus 752 ~~Vl~lDEid~l~~------~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~-~~l~~~~~~~~~~~~~~~~~~ 824 (973)
+.++++||+-..+. ..+..+...++.| .=++.|+|... +.+.+ -+.
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--------------idVitT~Nlqh~esl~d-------------~v~ 137 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--------------IDVYTTVNVQHLESLND-------------QVR 137 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--------------CEEEEEEEGGGBGGGHH-------------HHH
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--------------CCEEEEccccccccHHH-------------HHH
Confidence 57999999876531 1333444455543 12778898742 11111 000
Q ss_pred HHHHHHHHhccChhhhcccceEEEcCCCCHHHHHHH
Q 002068 825 QRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSI 860 (973)
Q Consensus 825 ~~~~~~l~~~f~p~ll~R~d~~i~f~~l~~~~l~~I 860 (973)
...--.+....+..++.+.|. |.+-.++++++.+-
T Consensus 138 ~itg~~v~e~vpd~~~~~a~~-v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 138 GITGVQVRETLPDWVLQEAFD-LVLIDLPPRELLER 172 (228)
T ss_dssp HHHSCCCCSCBCHHHHHTCSE-EEEBCCCHHHHHHH
T ss_pred HHcCCCcCCcCccHHHhhCCe-EEEecCCHHHHHHH
Confidence 000001134566677788866 56666777775443
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.60 E-value=0.00018 Score=71.82 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.58 E-value=0.00018 Score=74.33 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=58.3
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc-chhhhhhhcCCCCCcccccccchhhHHHHh----CCCeE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM-EKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAV 754 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~-~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~V 754 (973)
..++++||+|+|||+++..++..+...+..++.+....-. ....+..-+|-............+...+.. ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 3588899999999999988887775555566655322211 101111112322111111122345555554 34689
Q ss_pred EEEccccccCHHHHHHHHHhhcC
Q 002068 755 ILFDEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 755 l~lDEid~l~~~v~~~Ll~~le~ 777 (973)
|+|||++.++.+..+.+..+.+.
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~~ 115 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAEN 115 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHHT
T ss_pred EEEecCccCcHHHHHHHHHHHhC
Confidence 99999999998877777665554
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.47 E-value=0.00019 Score=77.51 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=40.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEEccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~lDEi 760 (973)
.++|+||||||||+||..++... +....|+.+...+..+.. - .+ .......+.+.+.+.. +||||++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~~eE~v~~~-----~---~~--le~~l~~i~~~l~~~~--LLVIDsI 191 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSGY-----N---TD--FNVFVDDIARAMLQHR--VIVIDSL 191 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEEBSCSSTTC-----B---CC--HHHHHHHHHHHHHHCS--EEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEecchhhhhhh-----h---cC--HHHHHHHHHHHHhhCC--EEEEecc
Confidence 47999999999999999999872 222234444222221100 0 00 0000012334455555 9999999
Q ss_pred cccCH
Q 002068 761 EKAHS 765 (973)
Q Consensus 761 d~l~~ 765 (973)
+.+.+
T Consensus 192 ~aL~~ 196 (331)
T 2vhj_A 192 KNVIG 196 (331)
T ss_dssp TTTC-
T ss_pred ccccc
Confidence 98753
No 210
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.46 E-value=3.7e-05 Score=77.29 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=58.0
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc--c------cc--ccccccchHHHHHHHHHHHHHHhCC
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG--A------LI--AGAKYRGEFEDRLKAVLKEVTESEG 348 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~------~~--~g~~~~g~~e~~l~~~~~~~~~~~~ 348 (973)
.+++||+|+||||++..++..+... +.+++.+... . +. .|.............+++.+. ..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~~ 76 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--ED 76 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--TT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--CC
Confidence 5799999999999997777766332 2233222100 0 00 000000000001112222221 23
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHH-hhhccCHHHHccCceE
Q 002068 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR-KYIEKDPALERRFQQV 413 (973)
Q Consensus 349 ~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~-~~~~~d~al~~Rf~~i 413 (973)
.-+|+|||++.+. .+....|+.+.+.+. .+|.++...+|+ +.|...+.+..+.+.|
T Consensus 77 ~dvviIDE~Q~~~--------~~~~~~l~~l~~~~~-~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v 133 (184)
T 2orw_A 77 TRGVFIDEVQFFN--------PSLFEVVKDLLDRGI-DVFCAGLDLTHKQNPFETTALLLSLADTV 133 (184)
T ss_dssp EEEEEECCGGGSC--------TTHHHHHHHHHHTTC-EEEEEEESBCTTSCBCHHHHHHHHHCSEE
T ss_pred CCEEEEECcccCC--------HHHHHHHHHHHHCCC-CEEEEeeccccccCCccchHHHHHHhhhe
Confidence 4599999999875 246666776766653 344333322221 2244557777776643
No 211
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.28 E-value=0.00046 Score=79.83 Aligned_cols=113 Identities=21% Similarity=0.334 Sum_probs=64.5
Q ss_pred cchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhcCCCc-ceEEeccccccc----------h
Q 002068 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-ALVRIDMSEYME----------K 721 (973)
Q Consensus 653 Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~-~~~~i~~~~~~~----------~ 721 (973)
+|..++..+...+.. . . +++++.|+||||||+++..++..+...+. .++.+..+.-.. .
T Consensus 29 ~Q~~av~~~~~~i~~-------~-~--~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE-------K-K--HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHS-------S-S--CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhc-------C-C--CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 677777777666542 1 1 26999999999999999999998854443 333332221100 0
Q ss_pred hhhhhhcCCCCCcccccccchh--hHHHHhCCCeEEEEccccccCHHHHHHHHHhhcC
Q 002068 722 HAVSRLIGAPPGYVGYEEGGQL--TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 722 ~~~~~l~G~~~g~~g~~~~~~l--~~~~~~~~~~Vl~lDEid~l~~~v~~~Ll~~le~ 777 (973)
.+...+++..+...+ ....+ ...-......+|++||+..+++..+..|+..+..
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 111122221110000 00000 0000112457999999999999999999998863
No 212
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.23 E-value=0.0086 Score=70.90 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=69.0
Q ss_pred hhHHHHHHHHH-HHHHHhCCCccChhHHHHHhhcccccccchhhccCCChhHHHHHHHHHhccccc-cCC----------
Q 002068 162 RDLEALIQRSR-EYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSV-IDQ---------- 229 (973)
Q Consensus 162 ~~~~~~l~~A~-~~a~~~g~~~I~~~hlllall~~~~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~-~~~---------- 229 (973)
.+++..+..++ ..+...||.|+..+.|+-... ++ ++++.+.+.+.+..+.....+ ...
T Consensus 72 ~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~-------~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (574)
T 3e1s_A 72 RRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVV-------HY---TRVTPGQARLAVETAVELGRLSEDDSPLFAAEAAA 141 (574)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHH-------HH---HCCCHHHHHHHHHHHHHHTSSEEECCCCSCC---C
T ss_pred HHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHH-------HH---hCCCHHHHHHHHHHHHhCCCEEEEecccccccccc
Confidence 46777888888 777788999999998864421 12 246777777777665432211 111
Q ss_pred CCC-----chhHHHH-hhhhcHHHHHhcCC-----------CCCC-CC-chHHHHHHHHHhccCCCCCceEECCCCCcHH
Q 002068 230 DPE-----GKYEALE-KYGKDLTAMASAGK-----------LDPV-IG-RDDEIRRCIQILSRRTKNNPVLIGEPGVGKT 290 (973)
Q Consensus 230 ~~~-----~~~~~l~-~~~~~l~~~~~~~~-----------l~~i-iG-~~~~i~~li~~l~~~~~~~~LL~GppG~GKT 290 (973)
... ..++..+ .....+........ ++.+ +. .+.....+..++ ....++++||||||||
T Consensus 142 ~~~~~~yl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~Q~~Av~~~~---~~~~~~I~G~pGTGKT 218 (574)
T 3e1s_A 142 TGEGRIYLPHVLRAEKKLASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLA---GHRLVVLTGGPGTGKS 218 (574)
T ss_dssp CSCCEEECHHHHHHHHHHHHHHHHHHHSCCCC-CCCCCCCCCTTTTTTCCHHHHHHHHHHT---TCSEEEEECCTTSCHH
T ss_pred CCCcEEEcHHHHHHHHHHHHHHHHHhccCCccCCChhhHHHHHhhcCCCCHHHHHHHHHHH---hCCEEEEEcCCCCCHH
Confidence 000 1112111 11112222222111 1111 11 122333333332 3457899999999999
Q ss_pred HHHHHHHHHHhc
Q 002068 291 AISEGLAQRIVQ 302 (973)
Q Consensus 291 ~la~~la~~l~~ 302 (973)
+++..++..+..
T Consensus 219 t~i~~l~~~l~~ 230 (574)
T 3e1s_A 219 TTTKAVADLAES 230 (574)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 213
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.22 E-value=0.00043 Score=90.21 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=55.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCC--------CCCcccccccchhhHHHHhCCC
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA--------PPGYVGYEEGGQLTEVVRRRPY 752 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~--------~~g~~g~~~~~~l~~~~~~~~~ 752 (973)
.++++||+|+|||+||-.+.......+.....+|...-.+... .+-+|- .|. .|..........++....
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~-~~~~Gv~~~~l~~~~p~-~~e~~l~~~~~~~~s~~~ 1510 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPD-TGEQALEICDALARSGAV 1510 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCS-SHHHHHHHHHHHHHHTCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH-HHHcCCCHHHeEEeCCC-cHHHHHHHHHHHHHcCCC
Confidence 5999999999999999777755555577888888875544432 222332 111 111111234556677788
Q ss_pred eEEEEccccccCHH
Q 002068 753 AVILFDEIEKAHSD 766 (973)
Q Consensus 753 ~Vl~lDEid~l~~~ 766 (973)
++|++|-+..+.|.
T Consensus 1511 ~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1511 DVIVVDSVAALTPK 1524 (1706)
T ss_dssp SEEEESCSTTCCCT
T ss_pred CEEEEccHHhCCcc
Confidence 89999999877653
No 214
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.21 E-value=0.0011 Score=86.55 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=87.4
Q ss_pred hcCCCCCCCCchHHHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHh--cCCCCcccCCCeEEEEEcccccc-
Q 002068 250 SAGKLDPVIGRDDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIV--QGDVPQALMNRKLISLDMGALIA- 324 (973)
Q Consensus 250 ~~~~l~~iiG~~~~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~--~~~~p~~l~~~~~~~l~~~~~~~- 324 (973)
-|.....+|||+.++.++.+.|... ...-+.|+|++|+|||+||+.+++... .... ...++.++++....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF-----SGGVHWVSIGKQDKS 193 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS-----TTCEEEEECCSCCHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC-----CCeEEEEEECCcCch
Confidence 4555667999999999999988532 233467999999999999998876531 1111 22355666544210
Q ss_pred --------------c----ccccchHHHHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCE
Q 002068 325 --------------G----AKYRGEFEDRLKAVLKEVTE-SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGEL 385 (973)
Q Consensus 325 --------------g----~~~~g~~e~~l~~~~~~~~~-~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i 385 (973)
. ..........+...+..... ..++.+|+||+++... .+..+ ....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------~~~~~--~~~~ 258 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------VLKAF--DNQC 258 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------HHTTT--CSSC
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------HHHhh--cCCC
Confidence 0 00000111112222222111 1347899999997532 13222 2345
Q ss_pred EEEEccCchHHHhhhccCHHHHccCceEEecC-CCHHHHHHHHHHHH
Q 002068 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQ-PNVEDTISILRGLR 431 (973)
Q Consensus 386 ~iI~at~~~~~~~~~~~d~al~~Rf~~i~~~~-p~~~e~~~il~~~~ 431 (973)
+||.||..... -..+...-..+.+.. .+.++..+++....
T Consensus 259 ~ilvTtR~~~~------~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 259 QILLTTRDKSV------TDSVMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp EEEEEESSTTT------TTTCCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred EEEEEcCCHHH------HHhhcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 77777765531 111111123577776 78898888886544
No 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.08 E-value=0.0026 Score=78.49 Aligned_cols=43 Identities=21% Similarity=0.175 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHhccC-CCCCceEECCCCCcHHHHHHHHHHH
Q 002068 257 VIGRDDEIRRCIQILSRR-TKNNPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 257 iiG~~~~i~~li~~l~~~-~~~~~LL~GppG~GKT~la~~la~~ 299 (973)
.|||+.++.++.+.|... ...-+.++|++|+||||||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 399999999999988753 3344679999999999999999853
No 216
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0023 Score=75.76 Aligned_cols=147 Identities=15% Similarity=0.149 Sum_probs=81.3
Q ss_pred CCchHHHHHHHHHhccC---CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc-----------
Q 002068 258 IGRDDEIRRCIQILSRR---TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----------- 323 (973)
Q Consensus 258 iG~~~~i~~li~~l~~~---~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~----------- 323 (973)
+||+.++..+.+.|... ...-+.++|++|+||||||+.+++.. ...+.... + ..+.++++...
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~-~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKS-DQLIGINY-D-SIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHC-SSTBTTTB-S-EEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhh-hHHHhccC-C-cEEEEEECCCCCCCHHHHHHHH
Confidence 69999999999988654 23446799999999999999999621 00111111 2 24445554421
Q ss_pred ----ccc----c----ccchHHHHHHHHHHHHHHhCC-CeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEc
Q 002068 324 ----AGA----K----YRGEFEDRLKAVLKEVTESEG-QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGA 390 (973)
Q Consensus 324 ----~g~----~----~~g~~e~~l~~~~~~~~~~~~-~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~a 390 (973)
.+. . ..+.. ..+...+..... +. +++|+||++.... .. .+. ......||.|
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~L~-~~kr~LlVLDdv~~~~---------~~--~~~---~~~gs~ilvT 271 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTS-VVLKRMICNALI-DRPNTLFVFDDVVQEE---------TI--RWA---QELRLRCLVT 271 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCH-HHHHHHHHHHHT-TSTTEEEEEEEECCHH---------HH--HHH---HHTTCEEEEE
T ss_pred HHHHhcCcccccccccccccH-HHHHHHHHHHHc-CCCcEEEEEECCCCch---------hh--ccc---ccCCCEEEEE
Confidence 000 0 00111 112222222222 33 7999999997642 11 111 1145677777
Q ss_pred cCchHHHhhhccCHHHHccC-ceEEecCCCHHHHHHHHHHH
Q 002068 391 TTLDEYRKYIEKDPALERRF-QQVYVDQPNVEDTISILRGL 430 (973)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf-~~i~~~~p~~~e~~~il~~~ 430 (973)
|...... ..+ .-. ..+.+...+.++..+++...
T Consensus 272 TR~~~v~------~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 272 TRDVEIS------NAA-SQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp ESBGGGG------GGC-CSCEEEEECCCCCHHHHHHHHHHT
T ss_pred cCCHHHH------HHc-CCCCeEEECCCCCHHHHHHHHHHH
Confidence 7665421 111 111 25788888999988877643
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.04 E-value=0.004 Score=63.82 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
+.+.++++.|+|||||||++-.+|..+... |..++.+++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~ 42 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVV 42 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEe
Confidence 455679999999999999999999998543 455655554
No 218
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.00 E-value=0.00065 Score=68.40 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=53.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc---cccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS---EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~---~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
-.+++||.|+|||+.+-.+++.+...+..++.+... .+... .+..-+|-............+.+.+. .+..+|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~-~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKE-DVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------C-EEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHH-HHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEE
Confidence 478999999999988877777664445555555322 11111 11111121111111111122333322 24679999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q 002068 758 DEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~ 777 (973)
||++.++++..+.+..+.+.
T Consensus 88 DEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 99999988887777666554
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.91 E-value=0.0011 Score=73.51 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=52.6
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCC-CcceEEe-ccccccchhhhhhhcCC-CCCcccccccchhhHHHHhCCCeEEE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNT-EEALVRI-DMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~~~~i-~~~~~~~~~~~~~l~G~-~~g~~g~~~~~~l~~~~~~~~~~Vl~ 756 (973)
+.++++||+|+||||+.+++...+... +..++.+ |..++....... ++.. ..+.........+..+++ ..+.||+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~-~v~q~~~~~~~~~~~~~La~aL~-~~Pdvil 201 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC-LVNQREVHRDTLGFSEALRSALR-EDPDIIL 201 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-EEEEEEBTTTBSCHHHHHHHHTT-SCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc-ceeeeeeccccCCHHHHHHHHhh-hCcCEEe
Confidence 479999999999999999999888432 2333332 111221110000 0000 000000000012333333 4568999
Q ss_pred EccccccCHHHHHHHHHhhcCCe
Q 002068 757 FDEIEKAHSDVFNVFLQILDDGR 779 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g~ 779 (973)
+||+- +++....+++..+.|.
T Consensus 202 lDEp~--d~e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 202 VGEMR--DLETIRLALTAAETGH 222 (356)
T ss_dssp ESCCC--SHHHHHHHHHHHHTTC
T ss_pred cCCCC--CHHHHHHHHHHHhcCC
Confidence 99997 6788888888877653
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.91 E-value=0.0017 Score=67.11 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHh
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
..++|+||+|+||||+++.++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999997663
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.88 E-value=0.0013 Score=67.58 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.4
Q ss_pred CceEECCCCCcHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQ 298 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~ 298 (973)
-++|+||||+|||+++..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998
No 222
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.78 E-value=0.0027 Score=63.55 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=64.6
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc----cccchhhhhhhcC-----CCCCccccccc----------
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS----EYMEKHAVSRLIG-----APPGYVGYEEG---------- 740 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~----~~~~~~~~~~l~G-----~~~g~~g~~~~---------- 740 (973)
+.+++++++|.|||++|-.+|-...+.+.++..+..- .+.+...+..+ + ...++.-....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4699999999999999999998887777777666322 12222222333 2 01122211100
Q ss_pred --chhhHHHHhCCCeEEEEccccc------cCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCCChhhh
Q 002068 741 --GQLTEVVRRRPYAVILFDEIEK------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (973)
Q Consensus 741 --~~l~~~~~~~~~~Vl~lDEid~------l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~~~~~l 806 (973)
....+.+....+.+|+|||+-. ++.+ .+++++.. .+.+.-+|+|+|..++.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNA-----------RPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHT-----------SCTTCEEEEECSSCCHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHh-----------CcCCCEEEEECCCCcHHH
Confidence 0111222235678999999943 4433 35555554 234566999999855443
No 223
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0019 Score=66.63 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc-------ccc--cccccchHHHHHHHHHHHHHHh---
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA-------LIA--GAKYRGEFEDRLKAVLKEVTES--- 346 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-------~~~--g~~~~g~~e~~l~~~~~~~~~~--- 346 (973)
.+++||+|+||||++..++.++... +.+++.+.... +.. |.............++..+...
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 5788999999999999999887443 33444442110 000 0000000000112344444431
Q ss_pred CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHH
Q 002068 347 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEY 396 (973)
Q Consensus 347 ~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~ 396 (973)
...-+|+|||++.+. .+....+..+.+. .+.+|.+.-..+|
T Consensus 88 ~~~dvViIDEaQ~l~--------~~~ve~l~~L~~~-gi~Vil~Gl~~df 128 (223)
T 2b8t_A 88 DETKVIGIDEVQFFD--------DRICEVANILAEN-GFVVIISGLDKNF 128 (223)
T ss_dssp TTCCEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEECCSBCT
T ss_pred CCCCEEEEecCccCc--------HHHHHHHHHHHhC-CCeEEEEeccccc
Confidence 235599999999875 3344555544444 5777777765444
No 224
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.75 E-value=0.003 Score=83.42 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=50.2
Q ss_pred EEEeecCCCCcHHHHHHH-HHHHhcCCCcceEEeccccccchhhhhhhcCCCCC-------cccccccchhhHHHHhCCC
Q 002068 681 SFMFMGPTGVGKTELAKA-LASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-------YVGYEEGGQLTEVVRRRPY 752 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~-la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g-------~~g~~~~~~l~~~~~~~~~ 752 (973)
.+=++||..+|||+||-. +|+.- ..+.....+|.....++.... -+|-... ..|.......-.+++...-
T Consensus 1777 ~~e~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~-~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1854 (2050)
T 3cmu_A 1777 IVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIYAR-KLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1854 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHHHH-HTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHh-hcCCEEEEEcCccccCHHHHH-HcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCC
Confidence 477999999999999954 44444 346677888887665543222 2232110 1121111122345566777
Q ss_pred eEEEEccccccCHH
Q 002068 753 AVILFDEIEKAHSD 766 (973)
Q Consensus 753 ~Vl~lDEid~l~~~ 766 (973)
.+|++|-+-.+-|.
T Consensus 1855 ~~~~~d~~~a~~p~ 1868 (2050)
T 3cmu_A 1855 DVIVVDSVAALTPK 1868 (2050)
T ss_dssp SEEEESCGGGCCCH
T ss_pred cEEEEcchhhcCcH
Confidence 89999988777654
No 225
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.72 E-value=0.0018 Score=65.77 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=51.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc---ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE---YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~---~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
-.+++||.|+|||+.+-.++......+..++.+...- +.+....+. +|-.....+......+.+.+. .+..+|+|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 4568999999999888777766655556666554221 111111122 232211111111122222222 24679999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q 002068 758 DEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~ 777 (973)
||++.++++..+.|..+.+.
T Consensus 108 DEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHhhC
Confidence 99999998877766665554
No 226
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.69 E-value=0.00067 Score=67.77 Aligned_cols=33 Identities=39% Similarity=0.462 Sum_probs=28.3
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
+.+++|+||||+||||+++.|++.+ +.+++..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 4578999999999999999999998 77776544
No 227
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.66 E-value=0.0018 Score=76.78 Aligned_cols=90 Identities=20% Similarity=0.323 Sum_probs=55.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc----------hhhhhhhcCCCCCcccccccchhhHHHHhC
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME----------KHAVSRLIGAPPGYVGYEEGGQLTEVVRRR 750 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~----------~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~ 750 (973)
.+++.||||||||+++..+...+...+.+++.+..+.-.. ..++.++++..+. ++... .-...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hcccc
Confidence 6999999999999999999988755444554332211100 1122233332220 11000 00112
Q ss_pred CCeEEEEccccccCHHHHHHHHHhhcC
Q 002068 751 PYAVILFDEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 751 ~~~Vl~lDEid~l~~~v~~~Ll~~le~ 777 (973)
+..+|++||+..++...+..|+..+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 457999999999999999999988864
No 228
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.64 E-value=0.017 Score=68.17 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHH
Q 002068 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAS 701 (973)
Q Consensus 652 ~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~ 701 (973)
+|.+..+..|...+.... ......+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988885421 11123789999999999999999996
No 229
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.62 E-value=0.0011 Score=65.66 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
..++|+|+||+||||+++.|++.+ +.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccc
Confidence 457899999999999999999998 5667766543
No 230
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.54 E-value=0.0023 Score=63.99 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=52.0
Q ss_pred EEEeecCCCCcHH-HHHHHHHHHhcCCCcceEEeccc---cccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEE
Q 002068 681 SFMFMGPTGVGKT-ELAKALASYMFNTEEALVRIDMS---EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT-~lA~~la~~l~~~~~~~~~i~~~---~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~ 756 (973)
-.+++||.|+||| +|.+++.+.... +..++.+... .+.+ .-.+. +|.............+....+. ..||+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~-~i~S~-~g~~~~A~~~~~~~d~~~~~~~--~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSS-SFCTH-DRNTMEALPACLLRDVAQEALG--VAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGG-SCCHH-HHHHSEEEEESSGGGGHHHHHT--CSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchh-hhhhc-cCCcccceecCCHHHHHHhccC--CCEEE
Confidence 3678999999999 999999988754 3555555432 2221 11111 1211000011112234444333 46999
Q ss_pred EccccccCHHHHHHHHHhhcCC
Q 002068 757 FDEIEKAHSDVFNVFLQILDDG 778 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g 778 (973)
|||++-+ ++..+.+..+.+.|
T Consensus 97 IDEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHHTT
T ss_pred EEchhhh-HHHHHHHHHHHHCC
Confidence 9999999 77555555555544
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.54 E-value=0.025 Score=64.10 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=51.8
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh-----hhhhhcCCCC--CcccccccchhhH---HHHh
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH-----AVSRLIGAPP--GYVGYEEGGQLTE---VVRR 749 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~-----~~~~l~G~~~--g~~g~~~~~~l~~---~~~~ 749 (973)
..++|+|++|+|||+++..||..+...+..+..++|..+.... ......|-+- .+.+......+.. .+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999987767777777776653321 1111122210 0111111111222 3334
Q ss_pred CCCeEEEEccccccC
Q 002068 750 RPYAVILFDEIEKAH 764 (973)
Q Consensus 750 ~~~~Vl~lDEid~l~ 764 (973)
..+.++++|....++
T Consensus 181 ~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHK 195 (443)
T ss_dssp TTCSEEEEECCCCSS
T ss_pred CCCCEEEEECCCccc
Confidence 557899999987765
No 232
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.002 Score=64.69 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
.+.|+||+|+|||++.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999998874
No 233
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.0011 Score=72.02 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDE 356 (973)
..++|+||+|+|||++++.||+.+ +..++..|.-.+..|. ..|.-.... .+.. +-+ -.|+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~-~igTakp~~----~e~~--gvp-h~lid~ 67 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGM-DIGTAKPSR----ELLA--RYP-HRLIDI 67 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTC-CTTTTCCCH----HHHH--HSC-EETSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCC-CcccCCCCH----HHHc--CCC-EEEeec
Confidence 357899999999999999999998 7778887643322111 111000000 0111 112 356776
Q ss_pred ccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 357 IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 357 i~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
.+-...-+...........+..+..+|++.|+.-.+.-
T Consensus 68 ~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 65432111111112334455666678877666655554
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.47 E-value=0.0085 Score=66.64 Aligned_cols=78 Identities=10% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------ccc-------ccchHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GAK-------YRGEFEDRLKAVLKE 342 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------g~~-------~~g~~e~~l~~~~~~ 342 (973)
.-++|+||||+|||++|..++..+... +.+++.++...... |.. ..... +.+..+++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~-e~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG-EQALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcH-HHHHHHHHH
Confidence 347899999999999999999877432 44566666432110 000 00112 233344454
Q ss_pred HHHhCCCeEEEEcccccccc
Q 002068 343 VTESEGQIILFIDEIHTVVG 362 (973)
Q Consensus 343 ~~~~~~~~ILfiDEi~~l~~ 362 (973)
+....+..+|+||.+..+..
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 44445567999999999874
No 235
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.47 E-value=0.0099 Score=70.92 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=35.5
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHH
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAS 701 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~ 701 (973)
..++|.+..+..|...+... . .....++++||+|+|||+||..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------K-GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------T-TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc------c-CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 56899999999888777531 1 1123689999999999999999874
No 236
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.46 E-value=0.031 Score=63.32 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=50.5
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh-----hhhhhcCCCCCcccc---cccchhhHHHHh--
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH-----AVSRLIGAPPGYVGY---EEGGQLTEVVRR-- 749 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~-----~~~~l~G~~~g~~g~---~~~~~l~~~~~~-- 749 (973)
..++|+||+|+||||++..||..+...+..+..+++..+.... ......|-+. +... .........+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-YGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-ECCTTCSCHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-eeccccCCHHHHHHHHHHHHH
Confidence 4789999999999999999999886666677777766543221 1112223211 1111 111112233332
Q ss_pred -CCCeEEEEccccccC
Q 002068 750 -RPYAVILFDEIEKAH 764 (973)
Q Consensus 750 -~~~~Vl~lDEid~l~ 764 (973)
..+.++++|....++
T Consensus 177 ~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHG 192 (433)
T ss_dssp TTTCSEEEEEECCCSS
T ss_pred hcCCCEEEEECCCCcc
Confidence 357899999998755
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.44 E-value=0.0044 Score=63.95 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=27.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.++++||||+|||++++.++..+...+.+++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 588999999999999999997664334556555543
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.44 E-value=0.0095 Score=61.94 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-++|+||||+|||+++..++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999863
No 239
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.43 E-value=0.019 Score=66.87 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccc--c--cccc-----cc--------------chH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL--I--AGAK-----YR--------------GEF 332 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~--~--~g~~-----~~--------------g~~ 332 (973)
.+|+|+.|.+|+|||++++.+...+.....|+ ..+++-+|.... . .+.. .. .++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999888775543332 467888885431 0 0000 01 111
Q ss_pred HHHHHHHHHHH-----------H----H-----------------------hCCCeEEEEccccccccCCCCCchhhHHH
Q 002068 333 EDRLKAVLKEV-----------T----E-----------------------SEGQIILFIDEIHTVVGAGATNGAMDAGN 374 (973)
Q Consensus 333 e~~l~~~~~~~-----------~----~-----------------------~~~~~ILfiDEi~~l~~~~~~~~~~~~~~ 374 (973)
+.+.+ +|... . . .-+..+|+|||++.++.... .++..
T Consensus 291 erR~~-ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~----~~~~~ 365 (574)
T 2iut_A 291 ERRYR-LMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVG----KKVEE 365 (574)
T ss_dssp HHHHH-HHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTC----HHHHH
T ss_pred HHHHH-HHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhh----HHHHH
Confidence 12211 11110 0 0 01136999999998874321 23445
Q ss_pred HHhhhhcC---CCEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHH
Q 002068 375 LLKPMLGR---GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISIL 427 (973)
Q Consensus 375 ~L~~~l~~---g~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~il 427 (973)
.|..+... -.|.+|.+|..+... .++..++.-|. +|.+...+..+...||
T Consensus 366 ~L~~Iar~GRa~GIhLIlaTQRPs~d---~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 366 LIARIAQKARAAGIHLILATQRPSVD---VITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp HHHHHHHHCTTTTEEEEEEESCCCTT---TSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCeEEEEEecCcccc---cccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 55555543 378899988876421 36788888886 7888888888877666
No 240
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.41 E-value=0.0014 Score=66.51 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=27.8
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEE
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (973)
....++|+||||+||||+++.|++.+ +.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l----------~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL----------NVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc----------CCCEEcc
Confidence 34578999999999999999999998 6666644
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.0018 Score=64.27 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=23.7
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l 300 (973)
...+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999998
No 242
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.38 E-value=0.0045 Score=66.68 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=29.9
Q ss_pred CCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 676 HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 676 ~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+|. .++|.||||+|||++|+.|++.+ ...++.+++..+
T Consensus 31 ~~~~-livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPT-AFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTF 69 (287)
T ss_dssp SSCE-EEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHH
T ss_pred CCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHh
Confidence 3444 68999999999999999999887 334667776444
No 243
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.051 Score=61.54 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccc-------------c-----cccchHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG-------------A-----KYRGEFEDRLKA 338 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g-------------~-----~~~g~~e~~l~~ 338 (973)
.-++++|++|+||||++..||..+... +.++.-+++..+..+ . ....+....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 446899999999999999999998543 556666654332110 0 011223333445
Q ss_pred HHHHHHHhCCCeEEEEcccccc
Q 002068 339 VLKEVTESEGQIILFIDEIHTV 360 (973)
Q Consensus 339 ~~~~~~~~~~~~ILfiDEi~~l 360 (973)
.+..+... +.-+++||....+
T Consensus 174 al~~a~~~-~~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSK-GVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHT-TCSEEEEECCCCS
T ss_pred HHHHHHhC-CCCEEEEECCCcc
Confidence 56666543 2348889987554
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.33 E-value=0.0074 Score=66.78 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=49.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCccc---ccccchhhH----HHHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVG---YEEGGQLTE----VVRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g---~~~~~~l~~----~~~~~~~~ 753 (973)
.++++||||+|||++|..++......+.++++++...-.+.. ....+|-.....- ......+.. .++.....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999987665445677777765433221 1222332211000 001112222 23345678
Q ss_pred EEEEccccccC
Q 002068 754 VILFDEIEKAH 764 (973)
Q Consensus 754 Vl~lDEid~l~ 764 (973)
+|+||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999999876
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.33 E-value=0.01 Score=65.55 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=51.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcc--c-ccccchhhH----HHHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV--G-YEEGGQLTE----VVRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~--g-~~~~~~l~~----~~~~~~~~ 753 (973)
.++++||||+|||+|+..++..+...+.++++++........ ...-+|-.+... . ......+.. .++.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 589999999999999999998875555677788776543322 222233221110 0 001112222 23345668
Q ss_pred EEEEccccccCH
Q 002068 754 VILFDEIEKAHS 765 (973)
Q Consensus 754 Vl~lDEid~l~~ 765 (973)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999987764
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.32 E-value=0.0021 Score=63.61 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=28.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|+|+||+|||++|+.|++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 58999999999999999999998 456776555443
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.30 E-value=0.002 Score=63.78 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=22.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
.+++|+|+||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999998
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.26 E-value=0.0023 Score=62.84 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|+|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998
No 249
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.25 E-value=0.0089 Score=62.36 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=57.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchh--hhhhhcCCC-CC-ccc---------ccccchhhHHH
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH--AVSRLIGAP-PG-YVG---------YEEGGQLTEVV 747 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~--~~~~l~G~~-~g-~~g---------~~~~~~l~~~~ 747 (973)
.++++||+|+|||.+|..++..+. ...++.+....+.... .... +|.. .+ +.| ....+.+....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~--~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~ 186 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS--TPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC--SCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHTH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH
Confidence 489999999999999998887761 2333444333433221 1111 2211 00 000 00001111111
Q ss_pred H--hCCCeEEEEccccccCHHHHHHHHHhhcCCeEecCCCcEEeccCEEEEEecCC
Q 002068 748 R--RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (973)
Q Consensus 748 ~--~~~~~Vl~lDEid~l~~~v~~~Ll~~le~g~~~~~~g~~v~~~~~iiI~tsN~ 801 (973)
. ....++|+|||++.+....+..++..+.. ..++.+|..+
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~--------------~~~l~LSATp 228 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSIA--------------PFRLGLTATF 228 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCCC--------------SEEEEEEESC
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhccC--------------CEEEEEecCC
Confidence 1 13468999999999987766666665532 3456777776
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.25 E-value=0.0094 Score=61.42 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.7
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-+.|+||+|+|||||++.++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999865
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.012 Score=58.81 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
+.++|+||+|+|||||++.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998875
No 252
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.23 E-value=0.0022 Score=63.99 Aligned_cols=32 Identities=38% Similarity=0.641 Sum_probs=27.3
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
..++|+|+||+||||+++.|++.+ +.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----------g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----------GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----------CCCEEeCc
Confidence 458899999999999999999998 77766544
No 253
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.23 E-value=0.0019 Score=63.42 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.9
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
..+++|+|+||+||||+++.|++.+ +.+++..|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l----------g~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL----------KLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 4578999999999999999999998 77776543
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.22 E-value=0.006 Score=64.65 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.7
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhc
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
+.++++||+|+||||+.+.|+..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 4699999999999999999998873
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.20 E-value=0.0074 Score=66.91 Aligned_cols=79 Identities=10% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------ccc------ccchHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GAK------YRGEFEDRLKAVLKEV 343 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------g~~------~~g~~e~~l~~~~~~~ 343 (973)
..++|+||||+|||++|..++..+... +.+++.++...... |.. ......+.+..++..+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 357899999999999999999877432 44566676532110 000 0001122344455544
Q ss_pred HHhCCCeEEEEcccccccc
Q 002068 344 TESEGQIILFIDEIHTVVG 362 (973)
Q Consensus 344 ~~~~~~~ILfiDEi~~l~~ 362 (973)
....+..+|+||.+..+..
T Consensus 137 ~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHTCCSEEEEECGGGCCC
T ss_pred HhccCCCEEEEcCHHHhcc
Confidence 4445567999999998874
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.19 E-value=0.0019 Score=64.51 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.0
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHH-H
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQR-I 300 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~-l 300 (973)
...+++|+|+||+||||+++.|++. +
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~ 35 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELD 35 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999998 5
No 257
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.17 E-value=0.0069 Score=72.38 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCeEEEEccccccCHHHHHHHHHhhcC
Q 002068 751 PYAVILFDEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 751 ~~~Vl~lDEid~l~~~v~~~Ll~~le~ 777 (973)
+..+|++||++.++......|+..+..
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPD 288 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCC
Confidence 456999999999998888888888754
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.16 E-value=0.0029 Score=63.00 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=24.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 712 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~ 712 (973)
.++|+||||+|||++|+.|++.+ +.+++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~ 35 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYD 35 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 68999999999999999999998 444543
No 259
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.14 E-value=0.0075 Score=63.59 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=28.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.|+||+|||++|+.|++.+ +.+.+.++...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 68999999999999999999988 334566666555
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.14 E-value=0.04 Score=60.09 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=32.8
Q ss_pred CceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 678 PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 678 p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
+...++|+||+|+|||+++..||..+...+..+..+++.-+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 33478999999999999999999988655667777776544
No 261
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.11 E-value=0.0039 Score=63.13 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCCCceEEEeecCCCCcHHHHHHHHHHHh
Q 002068 675 PHRPIASFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 675 ~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
+.+|. .++|.|+||+|||++|+.|++.+
T Consensus 17 ~~~~~-~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHh
Confidence 44554 68999999999999999999988
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.012 Score=61.32 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHh
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
..++|+||||+|||+++..++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999988877654
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.06 E-value=0.0046 Score=62.06 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHh
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~ 301 (973)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 468999999999999999999875
No 264
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.03 E-value=0.0064 Score=62.18 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.++++||||+|||+++..++. . .+.+.++++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 589999999999999999998 2 245677777654
No 265
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.02 E-value=0.017 Score=63.83 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=46.9
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------cc-------cccchHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GA-------KYRGEFEDRLKAVLKEV 343 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------g~-------~~~g~~e~~l~~~~~~~ 343 (973)
-++|+||||+|||||+..++..+... +.+++.++...... |. ......++.+ ..+..+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l-~~~~~l 134 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL-EIVDEL 134 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH-HHHHHH
Confidence 46899999999999999999887432 44566666433210 00 0011223222 333433
Q ss_pred HHhCCCeEEEEcccccccc
Q 002068 344 TESEGQIILFIDEIHTVVG 362 (973)
Q Consensus 344 ~~~~~~~ILfiDEi~~l~~ 362 (973)
.....+.+++||.+..+.+
T Consensus 135 ~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHTSCCSEEEEECTTTCCC
T ss_pred hhhcCCCeEEehHhhhhcC
Confidence 3344567999999988874
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.02 E-value=0.0034 Score=66.26 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=27.4
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.++|+||||+||||+|+.||+.+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEeccH
Confidence 36899999999999999999998 677776654
No 267
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.01 E-value=0.015 Score=60.54 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
.+.+++||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998888765
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.011 Score=61.63 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=28.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.++++||||+|||+++..++......+.+.++++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5899999999999999888766544455666666543
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.99 E-value=0.024 Score=61.16 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
.-++|+||||+|||||++.++..+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999988753
No 270
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.99 E-value=0.0041 Score=62.91 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
.++|+||||+|||++++.|++.+ +.+++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i 54 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFI 54 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEE
Confidence 69999999999999999999998 44454
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.99 E-value=0.0053 Score=60.34 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=22.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+||+|+||||+++.|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 272
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.98 E-value=0.013 Score=65.26 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=49.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcc---cccccchhhHH----HHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV---GYEEGGQLTEV----VRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~---g~~~~~~l~~~----~~~~~~~ 753 (973)
.++++||||+|||++|..++......+.++++++...-.+.. ...-+|...... .......+... ++.....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 588899999999999999887764445677788776533322 122223221100 00011122222 2345678
Q ss_pred EEEEccccccC
Q 002068 754 VILFDEIEKAH 764 (973)
Q Consensus 754 Vl~lDEid~l~ 764 (973)
+|+||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999998775
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.0039 Score=61.27 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.95 E-value=0.006 Score=66.49 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=27.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
..++|+||+|+|||+|+..||+.+ +..++..|-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l----------~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF----------PLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS----------CEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC----------CCcEEcccc
Confidence 357899999999999999999988 666666653
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.93 E-value=0.0026 Score=63.79 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=22.1
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.91 E-value=0.0055 Score=60.03 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.||||+|||++++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 277
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.91 E-value=0.0044 Score=62.81 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.9
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..++|+|++|+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999998
No 278
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.90 E-value=0.0037 Score=64.37 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=22.9
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..++|+|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999998
No 279
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.89 E-value=0.0037 Score=63.29 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=22.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.84 E-value=0.0037 Score=62.81 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.8
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..++|+|+||+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999998
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.84 E-value=0.005 Score=61.52 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.|+||+|||++|+.|++.+...+.++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 48999999999999999999998544444666655443
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.82 E-value=0.0053 Score=60.13 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
+++|.|++|+|||++|+.|++.+ +.+++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l---g~~~i 36 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL---KLEVL 36 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 79999999999999999999988 45554
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.79 E-value=0.0036 Score=61.35 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|+||||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 766
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.77 E-value=0.0046 Score=61.04 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.||||+|||++|+.|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999988
No 285
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.76 E-value=0.014 Score=64.54 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=46.7
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------cccc-------cchHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GAKY-------RGEFEDRLKAVLKE 342 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------g~~~-------~g~~e~~l~~~~~~ 342 (973)
.-++|+||||+|||+|+..++..+... +.+++.++...... |... ....++ +..++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~-~l~~~~~ 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ-ALEIADM 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHH-HHHHHHH
Confidence 347899999999999999999776432 34566665432110 0000 001222 2334444
Q ss_pred HHHhCCCeEEEEcccccccc
Q 002068 343 VTESEGQIILFIDEIHTVVG 362 (973)
Q Consensus 343 ~~~~~~~~ILfiDEi~~l~~ 362 (973)
+....++.+|+||++..+..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCC
T ss_pred HHhcCCCCEEEEcChHhhcc
Confidence 43344567999999998873
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.75 E-value=0.045 Score=58.36 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcC
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQG 303 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~ 303 (973)
.-++|+||+|+|||||+..++..+..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 357899999999999999999877655
No 287
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.73 E-value=0.013 Score=63.02 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=53.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEI 357 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi 357 (973)
-++++||+|+|||+|+..||+.+ +..+++.|.-.+..+. ..|.-.-. -.+.... + --|||..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~-~igTakp~----~~E~~~v--~-hhlid~~ 73 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGM-DIGTAKPN----AEELLAA--P-HRLLDIR 73 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTC-CTTTTCCC----HHHHHHS--C-EETSSCB
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEecccccccccc-cccCCCCC----HHHHcCC--C-EEEeccC
Confidence 35789999999999999999997 6677777643332111 11100000 0011111 1 3355655
Q ss_pred cccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 358 HTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
+---.-.......++...+..+.++|++.|+.-.|.-
T Consensus 74 ~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 74 DPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 4211111111224455677777889988776655543
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.73 E-value=0.008 Score=64.68 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+||||+||||+++.|++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999999999886
No 289
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=95.73 E-value=0.043 Score=47.65 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHc
Q 002068 850 QPLDRDQISSIVRLQLDRVQKRIADRKM---KMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILR 921 (973)
Q Consensus 850 ~~l~~~~l~~I~~~~l~~~~~~~~~~~~---~l~~~~~a~~~L~~~~~~~~~gaR~L~r~i~~~i~~~la~~~l~ 921 (973)
+.|+.++...|+.++| +.+++...|+ .+.++++++..|.+. |...-|+|.|+|.|.++++. .+..++.
T Consensus 1 sGYt~~EK~~IAk~~L--iPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK-~a~~i~~ 71 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHL--LPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRK-AVKQLLL 71 (94)
T ss_dssp CCCCHHHHHHHHHHTH--HHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHH-HHHHHHT
T ss_pred CCCCHHHHHHHHHHhc--cHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHH-HHHHHHH
Confidence 3588999999999998 6677777766 599999999999994 88889999999999996655 5555554
No 290
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.72 E-value=0.013 Score=65.57 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=49.2
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCC-CcceEEeccccccchhhhhhhcCCCCCcccc-----c---ccchhhHHHHhC
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYMEKHAVSRLIGAPPGYVGY-----E---EGGQLTEVVRRR 750 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~~~~i~~~~~~~~~~~~~l~G~~~g~~g~-----~---~~~~l~~~~~~~ 750 (973)
+.++++||+|+||||+.++|+..+... ...++.++.. . + .. ....-+++.. . ....+...++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~-e-~~----~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~- 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I-E-YV----FKHKKSIVNQREVGEDTKSFADALRAALRE- 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-C-C-SC----CCCSSSEEEEEEBTTTBSCSHHHHHHHTTS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-H-h-hh----hccCceEEEeeecCCCHHHHHHHHHHHhhh-
Confidence 479999999999999999999987432 2334343321 1 0 00 0000111110 0 01233344444
Q ss_pred CCeEEEEccccccCHHHHHHHHHhhcCC
Q 002068 751 PYAVILFDEIEKAHSDVFNVFLQILDDG 778 (973)
Q Consensus 751 ~~~Vl~lDEid~l~~~v~~~Ll~~le~g 778 (973)
.+.+|++||+- +++....+++....|
T Consensus 209 ~pd~illdE~~--d~e~~~~~l~~~~~g 234 (372)
T 2ewv_A 209 DPDVIFVGEMR--DLETVETALRAAETG 234 (372)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHHTTT
T ss_pred CcCEEEECCCC--CHHHHHHHHHHHhcC
Confidence 56799999996 455555555555443
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.70 E-value=0.0041 Score=62.31 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 292
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.70 E-value=0.011 Score=63.68 Aligned_cols=99 Identities=25% Similarity=0.210 Sum_probs=53.7
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHHhCCCeEEEEccc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEI 357 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~~ILfiDEi 357 (973)
-++++||+|+|||+|+..||+.+ +..+++.|.-.+.-+. ..|.- + .--.+. .+----|||..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~-~igTa--k--p~~~E~---~gvphhlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGM-DIGTA--K--ITAEEM---DGVPHHLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTC-CTTTT--C--CCHHHH---TTCCEESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeee-eecCC--C--CCHHHH---cCCCEEEeccC
Confidence 46789999999999999999987 6667766643222111 11100 0 000111 11124466655
Q ss_pred cccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCch
Q 002068 358 HTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (973)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~ 394 (973)
+---.-.......++...+..+.++|++.|+.-.|.-
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 4211111111224556667777788988777655543
No 293
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.70 E-value=0.012 Score=61.04 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=28.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~~ 717 (973)
.++|+||||+|||++++.++..... .....++++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5899999999999999999985321 145677777655
No 294
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.69 E-value=0.0069 Score=60.40 Aligned_cols=36 Identities=19% Similarity=0.480 Sum_probs=28.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (973)
.++|+|+||+|||++++.|++.+. .+..+|+..+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d~~~~ 47 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKLVK 47 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHHHHHH
Confidence 699999999999999999999832 255566665543
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.68 E-value=0.011 Score=60.79 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=27.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~~ 717 (973)
.+.|+||+|+|||++++.|+..+.. .....+.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6899999999999999999986532 133356666544
No 296
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.67 E-value=0.044 Score=62.71 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.8
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
..++|+||+|+||||+++.|+..+...+..+...++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 4789999999999999999998885444444443343
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.65 E-value=0.007 Score=60.55 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++++.|++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999988
No 298
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.65 E-value=0.046 Score=56.00 Aligned_cols=91 Identities=13% Similarity=0.015 Sum_probs=47.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc---cccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS---EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~---~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
-.+++||.|+|||+.+-..+......+..++.+... .+. ....+. +|-.....+......+.+.+ .+..+|+|
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 467899999999966655554444445555544421 111 111122 13221111111222344444 44679999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q 002068 758 DEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~ 777 (973)
||++-+.. ...+.+.+++
T Consensus 97 DEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 97 DEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SSGGGCTT--HHHHHHHHHH
T ss_pred Echhhhhh--HHHHHHHHHh
Confidence 99999975 5566666653
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.65 E-value=0.0074 Score=63.65 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=26.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (973)
.+++.||||+|||++|+.||+.+ +.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 48899999999999999999988 455665544
No 300
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.65 E-value=0.03 Score=62.92 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=26.5
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcc--cCCCeEEEEEcc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--LMNRKLISLDMG 320 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~--l~~~~~~~l~~~ 320 (973)
-++|+||||+|||+|+..++-... .|.. ..+..++.++..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~---~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQ---IPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT---SCGGGTCCSSEEEEEESS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhc---cCcccCCCCCcEEEEeCC
Confidence 468999999999999998775431 1110 024557777654
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.64 E-value=0.0042 Score=62.03 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHh
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
..++|+|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999883
No 302
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.63 E-value=0.0056 Score=63.68 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.9
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+.+++|+|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
No 303
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.63 E-value=0.051 Score=62.83 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=47.5
Q ss_pred eEEEEccccccccCCCCCchhhHHHHHhhhhcCC---CEEEEEccCchHHHhhhccCHHHHccCc-eEEecCCCHHHHHH
Q 002068 350 IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTIS 425 (973)
Q Consensus 350 ~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---~i~iI~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p~~~e~~~ 425 (973)
.+|+|||++.+.... ...+.+.|..+...| .+.+|.+|..+... .++..++.-|. +|.+...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d---vl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSVD---VITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT---TSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc---cccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 589999998887421 123444454443322 68888888776410 36677888785 78898888888776
Q ss_pred HH
Q 002068 426 IL 427 (973)
Q Consensus 426 il 427 (973)
|+
T Consensus 372 il 373 (512)
T 2ius_A 372 IL 373 (512)
T ss_dssp HH
T ss_pred hc
Confidence 66
No 304
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.63 E-value=0.0063 Score=60.50 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|+|+||+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999988
No 305
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.62 E-value=0.067 Score=53.47 Aligned_cols=121 Identities=16% Similarity=0.092 Sum_probs=66.2
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc---------ccc-----------cccccc----
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA---------LIA-----------GAKYRG---- 330 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~---------~~~-----------g~~~~g---- 330 (973)
.+.++++++++|.||||+|-++|-+.... |.++..+..-. +.. |..+..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 45789999999999999999999988543 55555553211 000 000101
Q ss_pred hHHHHHHHHHHHHHHh---CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHHHhhhccCHHHH
Q 002068 331 EFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (973)
Q Consensus 331 ~~e~~l~~~~~~~~~~---~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~~~~~~d~al~ 407 (973)
+.+......++.+... +..-+|+|||+.....-+-- +..++.++|..- ....-+|.|++..+ ++|.
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-~~~ev~~~l~~R--p~~~~vIlTGr~ap--------~~l~ 168 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL-PLEEVISALNAR--PGHQTVIITGRGCH--------RDIL 168 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-CHHHHHHHHHTS--CTTCEEEEECSSCC--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC-CHHHHHHHHHhC--cCCCEEEEECCCCc--------HHHH
Confidence 0122333444444432 33559999999765422210 112233333211 23677888887654 5666
Q ss_pred ccCceE
Q 002068 408 RRFQQV 413 (973)
Q Consensus 408 ~Rf~~i 413 (973)
..-+.|
T Consensus 169 e~AD~V 174 (196)
T 1g5t_A 169 DLADTV 174 (196)
T ss_dssp HHCSEE
T ss_pred HhCcce
Confidence 655533
No 306
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.61 E-value=0.019 Score=63.61 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
.....++++||+|+||||+.++++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 34447899999999999999999998843
No 307
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.61 E-value=0.0044 Score=61.94 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.1
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999988
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.61 E-value=0.0069 Score=60.41 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=27.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.++|.|+||+|||++++.|++.+...+.++..++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 5899999999999999999998843332244455443
No 309
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.60 E-value=0.031 Score=61.83 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-+.|+||||+|||||++.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999875
No 310
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.59 E-value=0.0056 Score=59.82 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998
No 311
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.58 E-value=0.013 Score=64.14 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
.-++|+||||+|||+++..++....... .....+.+++.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~-~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPP-EKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhccc-ccCCCCCeEEEEECCC
Confidence 3468999999999999999998752210 0000144667776543
No 312
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.58 E-value=0.006 Score=60.46 Aligned_cols=23 Identities=48% Similarity=0.694 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|+|+||+|||++++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 313
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.58 E-value=0.0042 Score=63.66 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.4
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
+++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 314
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.57 E-value=0.0044 Score=63.89 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l 300 (973)
.+..++|.||||+||||+++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999998
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.56 E-value=0.014 Score=64.03 Aligned_cols=88 Identities=22% Similarity=0.367 Sum_probs=48.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc-ccchhhhhhhcCCCCCcc---cccccchhhHHHHhCCCeEEE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE-YMEKHAVSRLIGAPPGYV---GYEEGGQLTEVVRRRPYAVIL 756 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~-~~~~~~~~~l~G~~~g~~---g~~~~~~l~~~~~~~~~~Vl~ 756 (973)
.++++||+|+||||+.++|+..+.. ....+.++... +.-. .....+ +++ |......+..++ ...+.+|+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~~~i----~~~~ggg~~~r~~la~aL-~~~p~ili 245 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHKNYT----QLFFGGNITSADCLKSCL-RMRPDRII 245 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCSSEE----EEECBTTBCHHHHHHHHT-TSCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cchhEE----EEEeCCChhHHHHHHHHh-hhCCCEEE
Confidence 5999999999999999999988743 33455554322 1100 000000 011 111101122222 34568999
Q ss_pred EccccccCHHHHHHHHHhhcCC
Q 002068 757 FDEIEKAHSDVFNVFLQILDDG 778 (973)
Q Consensus 757 lDEid~l~~~v~~~Ll~~le~g 778 (973)
+||.-. .++++. ++.+..|
T Consensus 246 ldE~~~--~e~~~~-l~~~~~g 264 (330)
T 2pt7_A 246 LGELRS--SEAYDF-YNVLCSG 264 (330)
T ss_dssp ECCCCS--THHHHH-HHHHHTT
T ss_pred EcCCCh--HHHHHH-HHHHhcC
Confidence 999876 455554 4445443
No 316
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.56 E-value=0.009 Score=59.98 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=52.6
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE----cc----cccc--ccccc-chHHHHHHHHHHHHHHhC
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD----MG----ALIA--GAKYR-GEFEDRLKAVLKEVTESE 347 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~----~~----~~~~--g~~~~-g~~e~~l~~~~~~~~~~~ 347 (973)
.+++||+|+||||.+-.++.++... +.+++.+. -. .+.+ |.... ... ....++++.+. .
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~-~~~~~i~~~~~--~ 80 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAI-KNSREILKYFE--E 80 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-------CEEECTTSCEEECEEE-SSSTHHHHHCC--T
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCccchHHHHHhhcCCceeeEee-CCHHHHHHHHh--c
Confidence 4789999999999999888887432 33333332 00 0000 00000 000 00113333332 1
Q ss_pred CCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHH
Q 002068 348 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEY 396 (973)
Q Consensus 348 ~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~ 396 (973)
..-+|+|||++.+. .+....+..+.+. .+.+|+++-..+|
T Consensus 81 ~~dvViIDEaqfl~--------~~~v~~l~~l~~~-~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD--------DEIVEIVNKIAES-GRRVICAGLDMDF 120 (191)
T ss_dssp TCSEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred cCCEEEEECCCCCC--------HHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 23499999999875 2345556655555 5677776654443
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.54 E-value=0.0052 Score=61.84 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=22.3
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999998
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.54 E-value=0.0076 Score=60.15 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.0
Q ss_pred CceEECCCCCcHHHHHHHHHHHHh
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~ 301 (973)
.++|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999983
No 319
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.53 E-value=0.012 Score=61.91 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999987
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.52 E-value=0.0057 Score=62.58 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.4
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.51 E-value=0.0069 Score=59.46 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+||+|+|||++++.|+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.51 E-value=0.012 Score=57.96 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=26.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|+||+|+|||++++.|+..+ + .+.++...+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 68999999999999999999887 3 445555554
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.0085 Score=62.76 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l 300 (973)
.+..++|+||||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999988
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.51 E-value=0.0086 Score=59.57 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=21.7
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|+|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 325
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.49 E-value=0.024 Score=60.58 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
.++|+||+|+|||+|+..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999997663
No 326
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.48 E-value=0.0053 Score=63.10 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=22.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.48 E-value=0.005 Score=63.70 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.7
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..++|+|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999987
No 328
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.46 E-value=0.0077 Score=60.18 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=28.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+.|.||||+||||+++.|+... +.+.+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 68899999999999999999874 445667766544
No 329
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.45 E-value=0.035 Score=57.82 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.6
Q ss_pred CCceEECCCCCcHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQ 298 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~ 298 (973)
.-+.|+||+|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3568999999999999999994
No 330
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.44 E-value=0.014 Score=59.14 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=51.5
Q ss_pred EEEeecCCCCcHHH-HHHHHHHHhcCCCcceEEecccc--ccchhhhhhhcCCCCCcccccccchhhHHHHhCCCeEEEE
Q 002068 681 SFMFMGPTGVGKTE-LAKALASYMFNTEEALVRIDMSE--YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 757 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~-lA~~la~~l~~~~~~~~~i~~~~--~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~Vl~l 757 (973)
..+++||-|+|||+ |.+.+.+.... +...+.+...- -.....+..-+|......-......+...+ ..+..+|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 46889999999999 55666555532 34444443211 100111111122211111111112222222 235569999
Q ss_pred ccccccCHHHHHHHHHhhcCC
Q 002068 758 DEIEKAHSDVFNVFLQILDDG 778 (973)
Q Consensus 758 DEid~l~~~v~~~Ll~~le~g 778 (973)
||++.+++++.+.+..+.+.|
T Consensus 108 DEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHTT
T ss_pred echhcCCHHHHHHHHHHHHCC
Confidence 999999999999988887654
No 331
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.40 E-value=0.01 Score=60.37 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.4
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998
No 332
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.40 E-value=0.015 Score=66.83 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
.-+++.|+||+|||+++..++..+..
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999988743
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.39 E-value=0.028 Score=59.39 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=27.9
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (973)
..++|+|+||+||||+++.|++.+... +..++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~-------g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN-------NIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEECTH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC-------CCEEEEECch
Confidence 357899999999999999999986322 4556545543
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.38 E-value=0.0096 Score=61.04 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 677 RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 677 ~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
+|. .++|.||||+||+|.|+.|++.+ .+..++.+++.
T Consensus 28 k~k-iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdll 64 (217)
T 3umf_A 28 KAK-VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLL 64 (217)
T ss_dssp SCE-EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHH
Confidence 443 57889999999999999999987 36677776654
No 335
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.37 E-value=0.041 Score=60.68 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=28.4
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (973)
-++|+||||+|||+++..++....... .....+..++.++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCB-TTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccc-ccCCCCCeEEEEECCC
Confidence 468999999999999999998742210 0000245677777543
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.0091 Score=59.70 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=26.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.|+||+|||++|+.|++.+ +. ..+++.++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d~~ 37 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY---GY--THLSAGEL 37 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHHHH
Confidence 58999999999999999999987 33 34555444
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.37 E-value=0.0098 Score=59.61 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.36 E-value=0.0085 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.35 E-value=0.0043 Score=61.27 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.6
Q ss_pred CceEECCCCCcHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQ 298 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~ 298 (973)
.++|+|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 340
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.34 E-value=0.0087 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|+||||+|||++|+.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4899999999999999999 655
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.34 E-value=0.0061 Score=61.72 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999987
No 342
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.32 E-value=0.011 Score=59.90 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=26.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|+|++|+|||++|+.|++.+ + +..++...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 58999999999999999999988 3 334444444
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.32 E-value=0.0097 Score=61.13 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=22.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+||||+|+.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999988
No 344
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.31 E-value=0.012 Score=59.50 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.9
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l 300 (973)
....++|+||+|+||||+++.|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999999987
No 345
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.31 E-value=0.0079 Score=59.25 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+||+|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999987
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.30 E-value=0.0078 Score=59.66 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
.++|.|+||+|||++|+.|++.+ +.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 58999999999999999999988 44554
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.29 E-value=0.011 Score=59.89 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=26.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.|+||+|||++++.|++.+ + +..+++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d~~ 49 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAGDL 49 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHHHH
Confidence 68999999999999999999887 3 344555444
No 348
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.27 E-value=0.0096 Score=60.62 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=28.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
.++|.||||+||+|.|+.|++.+ .+..++.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHH
Confidence 47899999999999999999987 36677776654
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.27 E-value=0.011 Score=57.72 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.27 E-value=0.0065 Score=60.22 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=18.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999987
No 351
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.25 E-value=0.1 Score=59.09 Aligned_cols=36 Identities=25% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (973)
.-++++||+|+||||++..||..+... +.++.-+++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~-------G~kVllv~~ 133 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR-------GYKVGLVAA 133 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEec
Confidence 346889999999999999999988543 445555543
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.24 E-value=0.012 Score=61.23 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=22.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 353
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.20 E-value=0.058 Score=58.13 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=52.6
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcC-CCcceEEeccccccchh--h---hhhhcCCCCCcccccccchhhHHHH-hCCC
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFN-TEEALVRIDMSEYMEKH--A---VSRLIGAPPGYVGYEEGGQLTEVVR-RRPY 752 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~-~~~~~~~i~~~~~~~~~--~---~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~ 752 (973)
..++|+||+|+|||+++..||..+.. .+..+..+++..+.... . .....|-+. +..+. ...+...+. ...+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~~~-~~~l~~al~~~~~~ 183 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYT-KEEFQQAKELFSEY 183 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-CBCSS-HHHHHHHHHHGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-EecCC-HHHHHHHHHHhcCC
Confidence 37999999999999999999988853 45566666665442110 0 111122111 11111 122323332 2445
Q ss_pred eEEEEccccccC--HHHHHHHHHhhc
Q 002068 753 AVILFDEIEKAH--SDVFNVFLQILD 776 (973)
Q Consensus 753 ~Vl~lDEid~l~--~~v~~~Ll~~le 776 (973)
.+|+||-....+ ......|..++.
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHh
Confidence 799999654443 234555555554
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.18 E-value=0.0098 Score=59.14 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=26.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.|+||+||||+++.|++.+ + +..++..++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d~~ 38 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTGDI 38 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---T--CEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEecHHHH
Confidence 58999999999999999999987 3 344555443
No 355
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.17 E-value=0.007 Score=61.97 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 356
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.15 E-value=0.2 Score=54.01 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=30.7
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
..++|+||+|+|||+++..||..+...+..+..+++..+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 478999999999999999999888544556666665443
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.14 E-value=0.011 Score=60.36 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.||||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 358
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.14 E-value=0.0073 Score=60.38 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=20.9
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+||||+||||+++.|+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 357899999999999999998763
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.12 E-value=0.012 Score=60.07 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.||||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 360
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.12 E-value=0.031 Score=61.89 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=50.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhcCCCCCcc--c-ccccchhhH----HHHhCCCe
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV--G-YEEGGQLTE----VVRRRPYA 753 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~G~~~g~~--g-~~~~~~l~~----~~~~~~~~ 753 (973)
.++++||||+|||++|..++......+.++++++...-.+... ..-+|...... . ......+.+ .++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 5899999999999999999977655556788888754333221 12223221100 0 001112222 23356678
Q ss_pred EEEEccccccC
Q 002068 754 VILFDEIEKAH 764 (973)
Q Consensus 754 Vl~lDEid~l~ 764 (973)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999999876
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.11 E-value=0.011 Score=61.02 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 362
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.10 E-value=0.015 Score=58.01 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=22.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHh
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
..++|+|+||+||||+++.|+..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999984
No 363
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.10 E-value=0.015 Score=58.69 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=28.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+.|.||+|+|||++++.|+..+...+...+.+|...+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 68899999999999999999988522222235554443
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.09 E-value=0.033 Score=63.82 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
-+++.|+||+|||+++..+|..+..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3688999999999999999988753
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.08 E-value=0.011 Score=60.54 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.0
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-++|.||||+||+|.|+.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998
No 366
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.08 E-value=0.14 Score=59.57 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=28.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC----CCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~----~~~~~~~i~~~~ 717 (973)
|+|+.|.||+|||.+.+.|...+.. ....|+.+|...
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 7999999999999999987765532 234578888764
No 367
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.08 E-value=0.014 Score=64.00 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=29.9
Q ss_pred chHHHHHHHHHh----ccCCCCCceEECCCCCcHHHHHHHHHHHH
Q 002068 260 RDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 260 ~~~~i~~li~~l----~~~~~~~~LL~GppG~GKT~la~~la~~l 300 (973)
.+..++.++..+ ......+++|+|+||+||||+++.|+..+
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344444454444 23444568999999999999999999987
No 368
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.06 E-value=0.034 Score=56.20 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=28.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+.+.||+|+|||++++.|+..+...+.+++.++...+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 68899999999999999999987433445555544433
No 369
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.05 E-value=0.024 Score=61.03 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC--CCcceEEeccccccchhhhhhhcCCCCCc--cc-ccccchh-hHH------HH
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGY--VG-YEEGGQL-TEV------VR 748 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~~l~G~~~g~--~g-~~~~~~l-~~~------~~ 748 (973)
.++++||||+|||+|+-.++..... .+..++++|..+-..... .+-+|-.... +. .....++ .+. ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-a~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-LRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-HHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-HHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 5899999999999998776655532 256788888765433321 2223432211 00 0111122 222 34
Q ss_pred hCCCeEEEEccccccC
Q 002068 749 RRPYAVILFDEIEKAH 764 (973)
Q Consensus 749 ~~~~~Vl~lDEid~l~ 764 (973)
.....+|++|-|..+.
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 5567899999998774
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.02 E-value=0.018 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.++|.|++|+|||++++.|++.+...+.++..++..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 688999999999999999999985444445555543
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.00 E-value=0.039 Score=62.77 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=34.5
Q ss_pred CceEEEeecCCCCcHHHHHHHHHHHhcCC-CcceEEecccccc
Q 002068 678 PIASFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYM 719 (973)
Q Consensus 678 p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~-~~~~~~i~~~~~~ 719 (973)
+...++|+|++|+|||+++..||..+... +..+..+|+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 33478899999999999999999988665 6778888887654
No 372
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.00 E-value=0.057 Score=56.52 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.5
Q ss_pred CCCceEECCCCCcHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~ 299 (973)
.-+++|+|.||+|||||+..|...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999988753
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.99 E-value=0.014 Score=61.00 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=26.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.||||+|||++|+.|++.+ + +..++.+++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~~~ 63 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTGDL 63 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEecHHH
Confidence 69999999999999999999887 3 445555443
No 374
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.99 E-value=0.015 Score=58.53 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.5
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999998
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.96 E-value=0.013 Score=58.77 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=26.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.|+||+|||++|+.|++.+ + +..+++..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 46 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGEL 46 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHHH
Confidence 58999999999999999999988 3 445555444
No 376
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.95 E-value=0.0093 Score=58.81 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=24.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.++|.|+||+|||++|+.|++.. ..+..++..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~----~~~~~i~~d 35 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred EEEEecCCCCCHHHHHHHHHhhc----CCcEEecHH
Confidence 58999999999999999999831 234555543
No 377
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.93 E-value=0.084 Score=57.42 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
-++|.|+||+|||+++..+|..+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999977643
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.92 E-value=0.011 Score=60.90 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++|.||||+|||++++.|++.+ + +..++.+++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d~~ 39 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY---Q--LAHISAGDL 39 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH---C--CEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHHHH
Confidence 58999999999999999999988 3 345555444
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.92 E-value=0.014 Score=61.32 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.3
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
...++|+|++|+||||+++.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999998
No 380
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.91 E-value=0.025 Score=63.03 Aligned_cols=31 Identities=42% Similarity=0.599 Sum_probs=26.0
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
-+++.||+|+|||+|+..||+.+ +..+++.|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~----------~~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF----------NGEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH----------TEEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHC----------CCeEeecC
Confidence 36789999999999999999998 55666655
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.90 E-value=0.017 Score=59.43 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.5
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999998
No 382
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.90 E-value=0.014 Score=59.17 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
...++|+||||+||||+++.|++.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467899999999999999999986
No 383
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.89 E-value=0.014 Score=61.87 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=28.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.++|+|+||+|||++|+.|++.+...+.+++.++...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 5899999999999999999998632345566555543
No 384
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.87 E-value=0.012 Score=59.59 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHh
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
.....+.|+||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445678999999999999999999984
No 385
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.87 E-value=0.015 Score=58.03 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.84 E-value=0.017 Score=62.77 Aligned_cols=33 Identities=42% Similarity=0.688 Sum_probs=27.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.++++||+|+|||++|+.||+.+ +..++..|.-
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds~ 39 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDSA 39 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccch
Confidence 58999999999999999999988 4556666543
No 387
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.84 E-value=0.083 Score=62.99 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=22.9
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
...+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999988887753
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.84 E-value=0.015 Score=59.68 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++|+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 389
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.84 E-value=0.025 Score=56.52 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.1
Q ss_pred ceEECCCCCcHH-HHHHHHHHHHhc
Q 002068 279 PVLIGEPGVGKT-AISEGLAQRIVQ 302 (973)
Q Consensus 279 ~LL~GppG~GKT-~la~~la~~l~~ 302 (973)
.+++||.|+||| .|.+++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 478999999999 888988887644
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.83 E-value=0.021 Score=56.96 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=26.5
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
++|+|+||+||||+++.|++.+... +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~-------g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQK-------GYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 6899999999999999999987332 45666655
No 391
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.78 E-value=0.13 Score=56.69 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.7
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
.....++|+||+|+|||+|+..|++.+..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 44567899999999999999999988743
No 392
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.74 E-value=0.14 Score=55.28 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=25.0
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcce
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEAL 710 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~ 710 (973)
..+.|+||+|+||||+++.|+..+...+..+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4789999999999999999998884333333
No 393
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.74 E-value=0.023 Score=57.33 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=26.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+.|.||+|+|||++++.|+..+ + .+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 58899999999999999999987 2 455665554
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.72 E-value=0.017 Score=58.93 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.68 E-value=0.023 Score=56.18 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=28.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (973)
.+.|.|++|+|||++++.|+..+...+.+++.+|..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 588999999999999999999874334567766643
No 396
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.62 E-value=0.023 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..+.|+||+|+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 397
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.58 E-value=0.013 Score=59.24 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.4
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.+.|+|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 7
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.57 E-value=0.028 Score=55.55 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=28.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
..++|+|++|+||||+++.|+..+... +.+++.+|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEEC
Confidence 357899999999999999999987432 55677766
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.52 E-value=0.025 Score=58.61 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.5
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998
No 400
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.52 E-value=0.018 Score=58.44 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=21.6
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.++|.|+||+||||+++.|++.+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.50 E-value=0.032 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+|++|+|||++++.|++.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 49999999999999999999988
No 402
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.49 E-value=0.027 Score=60.43 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=28.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++++||+|+|||+||..||+.+ +..++..|...+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~qv 46 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVDSALI 46 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTTT
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEecccccc
Confidence 57899999999999999999988 455666655443
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.48 E-value=0.024 Score=56.50 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=25.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
.+.|.|++|+|||++++.|++.+...+.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999998732234455443
No 404
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.46 E-value=0.046 Score=61.41 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=27.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~~ 717 (973)
.++|+||||+|||+|+..++-.... .+...++++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5899999999999999977643321 235577887765
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.45 E-value=0.02 Score=62.35 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=28.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.++|+||+|+|||+||..||+.+ +..++..|.-.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~q 75 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKMQ 75 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEcccccc
Confidence 58999999999999999999988 55666665544
No 406
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.45 E-value=0.03 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.8
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhc
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~ 302 (973)
++|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999844
No 407
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.43 E-value=0.098 Score=59.09 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=50.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccccchhhhhhhc--CCCCCcccccccchhhHHHHhC------CC
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI--GAPPGYVGYEEGGQLTEVVRRR------PY 752 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~--G~~~g~~g~~~~~~l~~~~~~~------~~ 752 (973)
..++.|+||||||++...+++. ..-++.....+..+. ...++. |.... .. .....+..++... +.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~----~~~lVlTpT~~aa~~-l~~kl~~~~~~~~-~~-~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF----EEDLILVPGRQAAEM-IRRRANASGIIVA-TK-DNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT----TTCEEEESCHHHHHH-HHHHHTTTSCCCC-CT-TTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhcc----CCeEEEeCCHHHHHH-HHHHhhhcCcccc-cc-ceEEEeHHhhcCCCCCCCCcC
Confidence 5789999999999998776642 112222222222211 111221 21110 00 0112333343322 15
Q ss_pred eEEEEccccccCHHHHHHHHHhhcC
Q 002068 753 AVILFDEIEKAHSDVFNVFLQILDD 777 (973)
Q Consensus 753 ~Vl~lDEid~l~~~v~~~Ll~~le~ 777 (973)
.+|++||+-++++..+..++..+..
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CEEEEeCcccCCHHHHHHHHHhCCC
Confidence 7999999999999999988887753
No 408
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.43 E-value=0.018 Score=58.54 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=52.0
Q ss_pred eEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccccccccc-chHHHHH------------HHHHHHHHHh
Q 002068 280 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR-GEFEDRL------------KAVLKEVTES 346 (973)
Q Consensus 280 LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~~~-g~~e~~l------------~~~~~~~~~~ 346 (973)
+++||.|+||||.+-.++.+.... +.+++.+...-- .+|. +....++ .++++.+.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~d---~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-- 99 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCID---NRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-- 99 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC--------------------CCEEECSSGGGGGGGCC--
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccC---CcchHHHHHhhcCCeeEEeecCCHHHHHHHHh--
Confidence 589999999999998888887433 445555431100 0000 0000000 11222111
Q ss_pred CCCeEEEEccccccccCCCCCchhhHHHHHhhhhcCCCEEEEEccCchHH
Q 002068 347 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEY 396 (973)
Q Consensus 347 ~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~ 396 (973)
...-+|+|||++-+. .+....+..+.+. .+.+|++.-..+|
T Consensus 100 ~~~dvViIDEaQF~~--------~~~V~~l~~l~~~-~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFD--------GDIVEVVQVLANR-GYRVIVAGLDQDF 140 (214)
T ss_dssp SSCCEEEECCGGGSC--------TTHHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred cCCCEEEEECcccCC--------HHHHHHHHHHhhC-CCEEEEEeccccc
Confidence 123489999999875 2344566555455 5678877765544
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.42 E-value=0.029 Score=56.86 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
.++|.|+||+|||++|+.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999884
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.41 E-value=0.019 Score=62.80 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=26.1
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
.++|.||+|+|||+++..|++.+ +..+++.|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l----------~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF----------NGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----------TEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHc----------CCceeccc
Confidence 46899999999999999999998 55566555
No 411
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.39 E-value=0.02 Score=57.60 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.9
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEE
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (973)
.+.|+|++|+||||+++.|++.+ |.+++..|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l----------g~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY----------GAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----------CCEEEECc
Confidence 36799999999999999999987 76666543
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.33 E-value=0.024 Score=58.42 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 413
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.33 E-value=0.019 Score=56.99 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-++|+||+|+|||||++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46899999999999999999876
No 414
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.27 E-value=0.036 Score=58.21 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=28.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCC-----CcceEEecccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDMSEYM 719 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~-----~~~~~~i~~~~~~ 719 (973)
.+.|.|++|+|||++|+.|++.+... +..++.+++.++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 68999999999999999999987210 1124466766653
No 415
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.25 E-value=0.028 Score=56.52 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 48899999999999999999988
No 416
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.25 E-value=0.036 Score=56.18 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=27.2
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
..+.++|++|+|||++++.|++.+. .+..+++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 3688999999999999999998651 3555665554
No 417
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.25 E-value=0.022 Score=59.57 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=22.7
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999988
No 418
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.24 E-value=0.098 Score=57.12 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=26.1
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVR 712 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~ 712 (973)
..+.|+||+|+||||+++.|+..+...+..+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 378999999999999999999888544444433
No 419
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.24 E-value=0.05 Score=54.94 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhccCC---CCCceEECCCCCcHHHHHHHHHHHHh
Q 002068 260 RDDEIRRCIQILSRRT---KNNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 260 ~~~~i~~li~~l~~~~---~~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
+++.++.+.+.+.... +.-+.|+|++|+||||+++.|+..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445666666554322 12357899999999999999999874
No 420
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.23 E-value=0.039 Score=60.46 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=22.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
+++|.||+|+|||++++.|+..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 69999999999999999999988
No 421
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.21 E-value=0.024 Score=57.30 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.++|++|+|||++++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999999 5
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.20 E-value=0.028 Score=58.16 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+.|.||+|+|||++++.|++.+ + +..++...+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCcH
Confidence 68999999999999999999988 3 445666555
No 423
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.19 E-value=0.024 Score=63.24 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCCCCceEECCCCCcHHHHHHHHHHHHh
Q 002068 274 RTKNNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 274 ~~~~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
.....++|+||+|+||||+.+.++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3444689999999999999999999874
No 424
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.19 E-value=0.13 Score=56.89 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=28.0
Q ss_pred HHHHHHHhc--cCCCCCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 264 IRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 264 i~~li~~l~--~~~~~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
.+.++..+. ......+.|+|+||+||||++..|+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444444443 233445789999999999999999998743
No 425
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.19 E-value=0.076 Score=63.20 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc
Q 002068 654 QDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 654 q~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
|..++..+...+.. + + ..+++++|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~---~-----~--~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQ---G-----K--KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHT---T-----C--SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---C-----C--CceEEEecCCCChHHHHHHHHHHHH
Confidence 55566666555431 1 1 1589999999999999877776663
No 426
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.18 E-value=0.022 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..++|+|+||+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 427
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.17 E-value=0.056 Score=61.47 Aligned_cols=25 Identities=36% Similarity=0.528 Sum_probs=21.9
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHh
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
...+|+||+|||||+|+..++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 3589999999999999999988763
No 428
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.17 E-value=0.086 Score=57.68 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
-++|.|+||+|||+++..+|..+..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999988744
No 429
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.16 E-value=0.052 Score=59.39 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=29.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCC------CcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNT------EEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~------~~~~~~i~~~~ 717 (973)
.++++||||+|||++|..++...... +.+.++++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58999999999999999999765322 45677777765
No 430
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.14 E-value=0.02 Score=58.06 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+|+||+||||+++.|++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999987
No 431
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.12 E-value=0.064 Score=57.56 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc
Q 002068 657 AVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 657 ~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
.+..|...+..... ..+.+|. .+.+.||+|+|||++++.|+..+.
T Consensus 12 ~~~~l~~~i~~~~~--~~~~~~~-ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 12 TIEFLDKYIPEWFE--TGNKCPL-FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp HHHHHHHHHHHHHT--TTCCSCE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh--ccCCCCe-EEEEECCCCCCHHHHHHHHHHHhh
Confidence 44455555544321 1233443 688999999999999999999884
No 432
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.12 E-value=0.084 Score=56.75 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=46.7
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccc-------ccc-------ccchHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GAK-------YRGEFEDRLKAVLKEV 343 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~-------g~~-------~~g~~e~~l~~~~~~~ 343 (973)
-++++||||+|||+|+-.++....... .+..++.+|...-.. |.. .....++....+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 368999999999999988777664310 144667777433210 000 0012222202333433
Q ss_pred --HHhCCCeEEEEcccccccc
Q 002068 344 --TESEGQIILFIDEIHTVVG 362 (973)
Q Consensus 344 --~~~~~~~ILfiDEi~~l~~ 362 (973)
.....+.+++||=|..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2334678999999999974
No 433
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.08 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~ 299 (973)
.-++++|+||+|||++|..++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 34689999999999999887754
No 434
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.07 E-value=0.13 Score=55.39 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=30.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.++++|++|+|||+++..||..+...+..+..+++..+
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 68889999999999999999888655566777776544
No 435
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.07 E-value=0.23 Score=54.83 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=25.5
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
..++|+||+|+||||+++.|+..+...+..+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 47899999999999999999998843333333
No 436
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.05 E-value=0.029 Score=57.61 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=27.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
.+.|.||+|+||||+++.|++.+ + +..++.+.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCccee
Confidence 58999999999999999999987 2 3445555543
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.04 E-value=0.41 Score=55.22 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred hccc--ccccchhhccCCChhHHHHHHHHHhccccccCCCCCchhHHHHhhhhcHHHHHhcCCCCCCCCchHHH-----H
Q 002068 193 TQDQ--RFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEI-----R 265 (973)
Q Consensus 193 l~~~--~~~~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i-----~ 265 (973)
|.+. +....+...-.++.+.+.+.+.+++..--..+-.. +...++...+.+++....+..-+-....+ .
T Consensus 6 l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (504)
T 2j37_W 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNI----KLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81 (504)
T ss_dssp --CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSS----STTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHH
Q ss_pred HHHHHhcc---------CCCCCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEcccccccc----------
Q 002068 266 RCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---------- 326 (973)
Q Consensus 266 ~li~~l~~---------~~~~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~---------- 326 (973)
.+.+.+.. ..+..++|+|+||+||||++..|+..+... +.++..+++.....+.
T Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-------G~kVllVd~D~~r~aa~~qL~~~~~~ 154 (504)
T 2j37_W 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-------GWKTCLICADTFRAGAFDQLKQNATK 154 (504)
T ss_dssp HHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEECCSSSHHHHHHHHHHHH
T ss_pred HHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEeccccchhHHHHHHHHhhc
Q ss_pred --------cccchHHHHHHHHHHHHHHhCCCeEEEEc
Q 002068 327 --------KYRGEFEDRLKAVLKEVTESEGQIILFID 355 (973)
Q Consensus 327 --------~~~g~~e~~l~~~~~~~~~~~~~~ILfiD 355 (973)
....+....+...+..+...+.. ++|||
T Consensus 155 ~~i~v~~~~~~~dp~~i~~~al~~~~~~~~D-vvIID 190 (504)
T 2j37_W 155 ARIPFYGSYTEMDPVIIASEGVEKFKNENFE-IIIVD 190 (504)
T ss_dssp HTCCEEECCCCSCHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred cCceEEccCCCCCHHHHHHHHHHHHHHCCCc-EEEEe
No 438
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.02 E-value=0.033 Score=56.59 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=28.1
Q ss_pred HHHHHHHHhccC--CCCCceEECCCCCcHHHHHHHHHHHHh
Q 002068 263 EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 263 ~i~~li~~l~~~--~~~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
.++.+.+.+... ...-+.|+||+|+|||||++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445555554432 223457999999999999999999984
No 439
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.01 E-value=0.17 Score=65.75 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=36.3
Q ss_pred cccccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHH
Q 002068 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASY 702 (973)
Q Consensus 649 ~~v~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~ 702 (973)
..++|.+..+..|...+.... .....+.++|+.|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc-------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 468999999999988875211 11236889999999999999888754
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.00 E-value=0.024 Score=57.25 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.5
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57799999999999999999998
No 441
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.99 E-value=0.022 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|.|++|+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999986
No 442
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.94 E-value=0.024 Score=55.99 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.6
Q ss_pred EEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 682 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 682 ~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
+|++|++|+|||++|+.++.. +.+.++++.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence 689999999999999999865 346777776553
No 443
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.92 E-value=0.02 Score=58.06 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.3
Q ss_pred CceEECCCCCcHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQ 298 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~ 298 (973)
.+.|+||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987
No 444
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.92 E-value=0.033 Score=55.67 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=23.7
Q ss_pred EEeecCCCCcHHHHHHHHHHHhcCCCcceE
Q 002068 682 FMFMGPTGVGKTELAKALASYMFNTEEALV 711 (973)
Q Consensus 682 ~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~ 711 (973)
+.|.|++|+||||+++.|++.+...+.+++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 789999999999999999998743334444
No 445
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.92 E-value=0.12 Score=56.13 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHHHHHccCCCCCCCceEEEeecCCCCcHHHHHHHHHHHhc
Q 002068 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 652 ~Gq~~~i~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
+|...++..+...+.. .....+|. .+.|.||+|+||||+++.|+..+.
T Consensus 70 ~~~~~~l~~~~~~~l~----~~~~~~p~-iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLG----KPEPKVPY-IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHT----CCCCCCCE-EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhc----cCCCCCCE-EEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444331 22244554 688999999999999999999884
No 446
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.91 E-value=0.027 Score=57.05 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|+||||+|||++++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999877
No 447
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.90 E-value=0.034 Score=56.46 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|++|+|||++++.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 448
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.88 E-value=0.035 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+||+|+|||++++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999876
No 449
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.88 E-value=0.15 Score=52.70 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.4
Q ss_pred EEEeecCCCCcHHHHHHHHH
Q 002068 681 SFMFMGPTGVGKTELAKALA 700 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la 700 (973)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 69999999999997665443
No 450
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.85 E-value=0.029 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
.-++|+||+|+||||+++.|+..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 346799999999999999999876
No 451
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.84 E-value=0.064 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.3
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF 704 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~ 704 (973)
.+.+.||+|+|||||++.|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999884
No 452
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.83 E-value=0.033 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..+.|+||+|+|||||++.|+..+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999999876
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.83 E-value=0.035 Score=59.68 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=27.0
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (973)
.+++.||+|+|||+||..||+.+ +..++..|.-.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~Q 38 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL---NGEVISGDSMQ 38 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TEEEEECCGGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC---ccceeecCccc
Confidence 48899999999999999999987 44555555443
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.81 E-value=0.1 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=19.9
Q ss_pred CceEECCCCCcHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~ 299 (973)
+++++|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.80 E-value=0.039 Score=56.14 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=28.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc-CCCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~-~~~~~~~~i~~~~ 717 (973)
.++|.|++|+|||++++.|++.+. ..+.+++.++...
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 588999999999999999999884 2233467776433
No 456
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.78 E-value=0.028 Score=56.02 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.7
Q ss_pred CceEECCCCCcHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~ 299 (973)
.++|+||+|+||||+++.|+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 3679999999999999999874
No 457
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.77 E-value=0.036 Score=56.18 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|.|+||+|||++++.|++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 458
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.74 E-value=0.076 Score=59.12 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.++|+||||+|||++++.|+..+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999877
No 459
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.72 E-value=0.033 Score=56.88 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.6
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+..+.|+|++|+||||+++.|++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999987
No 460
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.71 E-value=0.039 Score=55.40 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=27.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEecccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (973)
.+.++|++|+|||++++.+++.+ + +..+|+..+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~~ 47 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRIG 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHHH
Confidence 58899999999999999999986 3 4556666653
No 461
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.69 E-value=0.13 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
.-++|+||+|+||||++..||..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34679999999999999999998843
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.68 E-value=0.042 Score=57.71 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCceEECCCCCcHHHHHHHHHHHHhcCCCCcccCCCeEEEEEccccc
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 323 (973)
..+.|.|++|+||||+++.|++.+.-.-+. ..+..+..+++..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCccc
Confidence 346799999999999999999987110000 012345567766664
No 463
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.65 E-value=0.04 Score=55.41 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.0
Q ss_pred CCceEEEeecCCCCcHHHHHHHHHHH
Q 002068 677 RPIASFMFMGPTGVGKTELAKALASY 702 (973)
Q Consensus 677 ~p~~~~Ll~Gp~GtGKT~lA~~la~~ 702 (973)
+|. .+.|.|++|+|||++++.|++.
T Consensus 7 ~~~-~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPI-IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCE-EEEEEECTTSCHHHHHHHHHHT
T ss_pred Cce-EEEEECCCCCCHHHHHHHHHHC
Confidence 443 6899999999999999999985
No 464
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.64 E-value=0.036 Score=55.75 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.8
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
..-++|+||+|+|||||++.|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3456899999999999999999875
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.63 E-value=0.041 Score=60.05 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+++.||+|+|||++|+.|++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58999999999999999999988
No 466
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.63 E-value=0.039 Score=57.62 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|.||+|+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999887
No 467
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.63 E-value=0.034 Score=56.29 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEeecCCCCcHHHHHHHHHH
Q 002068 681 SFMFMGPTGVGKTELAKALAS 701 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~ 701 (973)
.+.|.||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 468
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.61 E-value=0.24 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCceEECCCCCcHHHHH-HHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAIS-EGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la-~~la~~l 300 (973)
.++++.+|+|+|||..+ -.+...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 57999999999999874 3344444
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.60 E-value=0.043 Score=55.39 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=26.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+.|.|++|+|||++++.|++.+ + +..+|...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceeccchH
Confidence 58999999999999999999988 3 334455444
No 470
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.56 E-value=0.088 Score=58.02 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=29.1
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcC------CCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~~ 717 (973)
.++|+||||+|||++|..++..... .+.+.++++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5899999999999999999976421 245677787765
No 471
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.53 E-value=0.032 Score=56.19 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-+.|+||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 46799999999999999999875
No 472
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.49 E-value=0.038 Score=56.17 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+||+|+|||++++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 473
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.49 E-value=0.038 Score=55.02 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|.||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999754
No 474
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.48 E-value=0.04 Score=55.45 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=25.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEec
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (973)
.+.|.|++|+||||+++.|++.+. +.+++.++
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~--g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIP--ANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSC--GGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHC--CCceEEEe
Confidence 589999999999999999999871 24455444
No 475
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.46 E-value=0.038 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.0
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-+.|+||+|+||||+++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46799999999999999999886
No 476
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.46 E-value=0.036 Score=56.38 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHHHh
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQRIV 301 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~l~ 301 (973)
....++|+|++|+||||+++.|++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999999999883
No 477
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.44 E-value=0.061 Score=58.69 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.5
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
-++|+||||+|||+++..++...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999763
No 478
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.44 E-value=0.037 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..+.|+||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999876
No 479
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.43 E-value=0.17 Score=57.66 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.8
Q ss_pred CceEECCCCCcHHHHHHHHHHHHhc
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRIVQ 302 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l~~ 302 (973)
-+++.|+||+|||+++-.+|..+..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Confidence 4689999999999999999988744
No 480
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.42 E-value=0.051 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..+.|+||+|+||||+++.|++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998
No 481
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.41 E-value=0.062 Score=55.78 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.2
Q ss_pred CCCCceEECCCCCcHHHHHHHHHHH
Q 002068 275 TKNNPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 275 ~~~~~LL~GppG~GKT~la~~la~~ 299 (973)
...+++|+|++|+|||||+..|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3456899999999999999988764
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.39 E-value=0.054 Score=60.37 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=27.6
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+++.||+|+|||+||..|++.+ +..++..|...+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~---~~~iis~Ds~Qv 38 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF---NGEVINSDSMQV 38 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH---TEEEEECCTTTT
T ss_pred EEEEECcchhhHHHHHHHHHHHC---CCeEeecCccce
Confidence 58899999999999999999998 445555554433
No 483
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.38 E-value=0.098 Score=57.27 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
...++++||+|+||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999876
No 484
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.32 E-value=0.048 Score=58.33 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCCceEEEeecCCCCcHHHHHHHHHHHhcCCCcceEEeccccc
Q 002068 676 HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (973)
Q Consensus 676 ~~p~~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (973)
.+|. .+.|+|++|+|||++|+.|++ + + +..+++..+
T Consensus 73 ~~~~-iI~I~G~~GSGKSTva~~La~-l---g--~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLY-VLGLTGISGSGKSSVAQRLKN-L---G--AYIIDSDHL 108 (281)
T ss_dssp TTCE-EEEEEECTTSCHHHHHHHHHH-H---T--CEEEEHHHH
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHH-C---C--CcEEehhHH
Confidence 3444 689999999999999999994 4 3 344555444
No 485
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.31 E-value=0.12 Score=55.93 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=28.7
Q ss_pred EEEeecCCCCcHHHHHHHHHHHhc--CCCcceEEeccccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYMF--NTEEALVRIDMSEY 718 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l~--~~~~~~~~i~~~~~ 718 (973)
.+.|.||+|+||||+++.|+..+. .....+..+++..+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 688999999999999999999874 23334555555544
No 486
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.27 E-value=0.027 Score=56.32 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
..++|+||+|+|||++|..|+++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 457999999999999999999874
No 487
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.25 E-value=0.043 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+||+|+|||++++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999999877
No 488
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.23 E-value=0.049 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.2
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|+||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999875
No 489
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.23 E-value=0.037 Score=56.53 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred CceEECCCCCcHHHHHHHHHHHH
Q 002068 278 NPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 278 ~~LL~GppG~GKT~la~~la~~l 300 (973)
.+.|+|++|+||||+++.|++ +
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-c
Confidence 578999999999999999987 5
No 490
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.22 E-value=0.087 Score=56.90 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=26.3
Q ss_pred eEEEeecCCCCcHHHHHHHHHHHhcCCCcceEE
Q 002068 680 ASFMFMGPTGVGKTELAKALASYMFNTEEALVR 712 (973)
Q Consensus 680 ~~~Ll~Gp~GtGKT~lA~~la~~l~~~~~~~~~ 712 (973)
..+.|+||+|+||||+++.|+..+...+..+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 378999999999999999999988544444433
No 491
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.20 E-value=0.065 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEeecCCCCcHHHHHHHHHHHh
Q 002068 682 FMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 682 ~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
++|+||+|+|||+|++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998765
No 492
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.19 E-value=0.57 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.1
Q ss_pred CCceEECCCCCcHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQR 299 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~ 299 (973)
.+++++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999888754
No 493
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.11 E-value=0.067 Score=55.44 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
...+.|+|++|+||||+++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999988
No 494
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.10 E-value=0.16 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCceEECCCCCcHHHHHHHHHHHH
Q 002068 277 NNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 277 ~~~LL~GppG~GKT~la~~la~~l 300 (973)
.++++++|+|+|||.++-.++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999988777654
No 495
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.09 E-value=0.17 Score=62.70 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=54.9
Q ss_pred ceEECCCCCcHHHHHHHHHHHHhc---C-CCCcccCCC----eEE-EEEcccccccccccchHHHHHHHHHHHHHHhCCC
Q 002068 279 PVLIGEPGVGKTAISEGLAQRIVQ---G-DVPQALMNR----KLI-SLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQ 349 (973)
Q Consensus 279 ~LL~GppG~GKT~la~~la~~l~~---~-~~p~~l~~~----~~~-~l~~~~~~~g~~~~g~~e~~l~~~~~~~~~~~~~ 349 (973)
++|+||.|+||||+.+.++....- | -+|..-... .++ .+...+... .....+...++.+..-+.....+
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~--~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIY--KGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CCHHHHHHHHHHHHHHCCTT
T ss_pred EEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHH--HhHHHhhHHHHHHHHHHHhccCC
Confidence 589999999999999998754321 2 233211000 011 111111111 11122333333443334334567
Q ss_pred eEEEEccccccccCCCCCchhhHH-HHHhhhhcCCCEEEEEccCchHH
Q 002068 350 IILFIDEIHTVVGAGATNGAMDAG-NLLKPMLGRGELRCIGATTLDEY 396 (973)
Q Consensus 350 ~ILfiDEi~~l~~~~~~~~~~~~~-~~L~~~l~~g~i~iI~at~~~~~ 396 (973)
.+|++||.-.=+.. .....+. .++..+.......+|.+|...+.
T Consensus 754 ~LlLLDEP~~GlD~---~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 754 SLVILDELGRGTST---HDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp CEEEEESTTTTSCH---HHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 89999998543321 1122333 34444434445677777777653
No 496
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.08 E-value=0.057 Score=55.15 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEeecCCCCcHHHHHHHHHH
Q 002068 681 SFMFMGPTGVGKTELAKALAS 701 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~ 701 (973)
.+.|.|++|+|||++++.|++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 497
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.06 E-value=0.077 Score=53.76 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=21.8
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh
Q 002068 681 SFMFMGPTGVGKTELAKALASYM 703 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l 703 (973)
.+.|.||+|+||||+++.|+..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999987
No 498
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.03 E-value=0.064 Score=59.70 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=27.1
Q ss_pred HHHHHHHh--ccCCCCCceEECCCCCcHHHHHHHHHHHH
Q 002068 264 IRRCIQIL--SRRTKNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 264 i~~li~~l--~~~~~~~~LL~GppG~GKT~la~~la~~l 300 (973)
...++.-+ .-..+..++|+||||+||||+++.|+..+
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34444433 23344567899999999999999999876
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.88 E-value=0.06 Score=61.04 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCceEECCCCCcHHHHHHHHHHHH
Q 002068 276 KNNPVLIGEPGVGKTAISEGLAQRI 300 (973)
Q Consensus 276 ~~~~LL~GppG~GKT~la~~la~~l 300 (973)
+.-++|+|+||+||||+++.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3446789999999999999999876
No 500
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.87 E-value=0.42 Score=55.13 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=27.5
Q ss_pred EEEeecCCCCcHHHHHHHHHHHh-cC---CCcceEEecccc
Q 002068 681 SFMFMGPTGVGKTELAKALASYM-FN---TEEALVRIDMSE 717 (973)
Q Consensus 681 ~~Ll~Gp~GtGKT~lA~~la~~l-~~---~~~~~~~i~~~~ 717 (973)
|+|+.|++|+|||++.+.|.-.+ +. ....++.+|...
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 79999999999999999987533 22 233567777654
Done!