BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002070
(973 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 288/809 (35%), Positives = 407/809 (50%), Gaps = 107/809 (13%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
IF + S E V+E L++G + + R+N EA+ D+ I G+ A+NRA+ G
Sbjct: 49 IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNG 108
Query: 219 DFVLIKVDRLSLWAKMKGFSNN--SSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNC 276
D V++K+ W +K SN+ + +S++P E G H KS D +
Sbjct: 109 DLVVVKLLPEEHWKVVKPESNDKETEAAYESDIPEELCGHHLPQQSLKSYND------SP 162
Query: 277 TLLSEKGIHHDDDSSSEAYNQEMIEREGYNYI----------NGHHPSTSDSTEKVSSSQ 326
++ E D Q ++ +G + +G P T D T +S
Sbjct: 163 DVIVEAQFDGSDSEDGHGITQNVL-VDGVKKLSVCVSEKGREDGDAPVTKDETTCISQDT 221
Query: 327 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDA 386
+ +++R + +VV I+E+ R GFL + A
Sbjct: 222 RALSEKSLQR-------------SAKVVYILEKKHSR-AATGFLKLL------------A 255
Query: 387 KKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDE 446
KN R+Y +P+ + P++ V +KD P R ++ T L RI +
Sbjct: 256 DKNSELF----RKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANT----LFICRIVD 307
Query: 447 WNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEE 505
W E+ F + G+ GE+EP+ IL E + S FS E L CLP +PW +P EE
Sbjct: 308 WKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEE 367
Query: 506 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
R+DLR CIFTIDPSTA DLDDALS + L+DG +VGVHIADVSYFV G+ LD A
Sbjct: 368 FSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVA 427
Query: 566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
R+TSVY++Q+ +PMLP LL EE+ SLNP D+L FS+ W L G ++D W GRT+IR
Sbjct: 428 AERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIR 487
Query: 626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
SC KLSYEHAQ +I+ + + L P + + +V +++ +L+ ++K L+ +R
Sbjct: 488 SCTKLSYEHAQSMIESPTEKIPAKEL----PPISPEHSSEEVHQAVLNLHGIAKQLRQQR 543
Query: 686 FTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 744
F DGALRL+ K F D E G P + + N L EEFMLLAN A I RAFP+
Sbjct: 544 FVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPE 603
Query: 745 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 804
ALLRRHP P R L + FC + GL +D SS+G ++SL Q K ++L N
Sbjct: 604 QALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTN 663
Query: 805 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
+RPMQ+A YFCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL
Sbjct: 664 MCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAAL---- 719
Query: 865 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 924
G R R D A D L
Sbjct: 720 ----------------GYRERL--------DMA--------------------PDTLQKQ 735
Query: 925 ATHCNDRKLACRNVKDACVKLYMWILLKK 953
A HCNDR++A + V++ L+ +L+K+
Sbjct: 736 ADHCNDRRMASKRVQELSTSLFFAVLVKE 764
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/803 (34%), Positives = 406/803 (50%), Gaps = 97/803 (12%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
IF + S E V+E L++G + + R+N EA+ D+ I G+ A+NRA+ G
Sbjct: 49 IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNG 108
Query: 219 DFVLIKVDRLSLWAKMKGFSNNSSI--VEDSNLPTEANGMH--SDICKGKSKVDVSYEYS 274
D V++K+ W +K SN+ I ++++P E G H KG S DV E
Sbjct: 109 DLVVVKLLPEDQWKAVKPESNDKEIEATYEADIPEEGCGHHPLQQSRKGWSGPDVIIE-- 166
Query: 275 NCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAI 334
DD S + + +G ++ P E S+ D I
Sbjct: 167 ---------AQFDDSDSEDRHGNTSGLVDGVKKLSISTPDRG--KEDSSTPVMKDENTPI 215
Query: 335 ERLSAMISSYPTKRPTGRVVSIIERSPRR--DGIVGFLNVNQWFNYKGGSRKDAKKNRSS 392
+ + +S ++ + +VV I+E+ R GI+ L A KN
Sbjct: 216 PQDTRGLSEKSLQK-SAKVVYILEKKHSRAATGILKLL---------------ADKNSDL 259
Query: 393 LSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESP 452
++Y +P+ + P++ V +KD P R ++ T L RI +W E+
Sbjct: 260 F----KKYALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANT----LFICRIIDWKEDCN 311
Query: 453 FPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEELLSRKD 511
F + G+ GE+EP+ IL E + S FS E L CLP +PW +P +E+ R+D
Sbjct: 312 FALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPDEVGKRRD 371
Query: 512 LRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTS 571
LR CIFTIDPSTA DLDDAL+ RL+DG VGVHIADVSYFV G++LD A R+TS
Sbjct: 372 LRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATS 431
Query: 572 VYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLS 631
VY++Q+ +PMLP LL EE+ SLNP D+L FS+ W L G +++ W GRT+IRSC KLS
Sbjct: 432 VYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLS 491
Query: 632 YEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGAL 691
Y+HAQ +I+ + E P + + +V +++ +L+ ++K L+ +RF DGAL
Sbjct: 492 YDHAQSMIENP----TEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGAL 547
Query: 692 RLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRR 750
RL+ K F D E G P + D N L EEFMLLAN A I R FP+ ALLRR
Sbjct: 548 RLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRR 607
Query: 751 HPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPM 810
HP P + L + FC + GL +D SS+G ++SL + K ++L N +RPM
Sbjct: 608 HPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVLTNMYSRPM 667
Query: 811 QLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR 870
Q+A YFCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL Y +
Sbjct: 668 QMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG----YSEQP 723
Query: 871 RMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCND 930
+ P ++ A HCND
Sbjct: 724 DVEPDTLQKQ--------------------------------------------ADHCND 739
Query: 931 RKLACRNVKDACVKLYMWILLKK 953
R++A + V++ + L+ +L+K+
Sbjct: 740 RRMASKRVQELSIGLFFAVLVKE 762
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 266/714 (37%), Positives = 378/714 (52%), Gaps = 71/714 (9%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
+F + + E V+ L++G+ + R+N EAY D+ I G+ +NRA+ G
Sbjct: 36 VFEAYMTKEEVSAGLKRGELIQGPLRINPKKFHEAYLPSPDGVRDLFIDGVVPRNRALNG 95
Query: 219 DFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANG-----MHSDICKGKSKVDVSYEY 273
D V++K+ W +K + + ED + P + G + + K +K
Sbjct: 96 DVVVVKLLPQEQWKVLK-----NDVCEDDDTPGHSTGNKQHALSPHLMKSSAK------- 143
Query: 274 SNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNA 333
N L+ E + DSS+E +GH + +K Q D + A
Sbjct: 144 -NPDLIIEAKV----DSSAE---------------DGHESALIGCLQKEIKDQ--DKLGA 181
Query: 334 IERLSAMISSYPTK-----RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKK 388
IE ++ T + T +VV I+E+ R GF+ K
Sbjct: 182 IEEKTSKQGDPKTFSDDCFQKTAKVVYILEKKHSR-AATGFI-------------KPLSD 227
Query: 389 NRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWN 448
S L+ R+ +P + P++ V + D P E T L I W
Sbjct: 228 KSSDLA---RKRALFSPVDHRLPRIYVPLGDCPHDFAIHPE----TYANTLFICSITAWR 280
Query: 449 EESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPC-VPWEVPQEELL 507
++S F + ++ G+ GE+EP+ IL E + S F + L CLP +PW +PQEE
Sbjct: 281 DDSNFAEGKLMKSLGQAGEIEPETEGILVEYGVDFSDFPDKVLQCLPQDLPWTIPQEEFQ 340
Query: 508 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 567
RKDLRN CIFTIDP+TA DLDDALS + L DG VGVHIADVSYFV G+ALDI A
Sbjct: 341 KRKDLRNECIFTIDPATARDLDDALSCKPLPDGNFEVGVHIADVSYFVAEGSALDIMASE 400
Query: 568 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSC 627
R+TSVY++Q+ IPMLP LL EE+ SLNP DRL FS+ W + G+++D W GR+VI SC
Sbjct: 401 RATSVYLVQKVIPMLPRLLCEELCSLNPMTDRLTFSVIWKITPQGEILDEWFGRSVICSC 460
Query: 628 CKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFT 687
KLSY+HAQ++I+ + L P + Q +++ +++ +L+ +++ L+ +RF
Sbjct: 461 VKLSYDHAQNMINHPDKKIEQHEL----PPVSPQHTINEIHQAVLNLHLIAQNLRKQRFD 516
Query: 688 DGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSA 746
DGALRL+ K F D E G P + D N L EEFMLLAN A I R FP+ A
Sbjct: 517 DGALRLDQLKLTFTLDKESGLPQGCYIYQYRDSNKLVEEFMLLANMAVAHHIYRRFPEEA 576
Query: 747 LLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYA 806
LLRRHP P + L + FC + GLQLD +SSG H+SL E + ++L N
Sbjct: 577 LLRRHPPPQTKMLNDLIEFCDQMGLQLDFTSSGTLHKSLNDQFETDEYSAARKEVLTNMC 636
Query: 807 TRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
+RPMQ+A YFC+G KD+T + HYAL P+YTHFTSP+RR+ D++VHR L A+L
Sbjct: 637 SRPMQMAVYFCTGALKDETLFHHYALNVPLYTHFTSPIRRFADVIVHRLLAASL 690
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/553 (39%), Positives = 308/553 (55%), Gaps = 29/553 (5%)
Query: 317 DSTEKVSSSQQND----GMNAIERL--SAMISSYPTKRPTGRVVSIIERSPRRDGIVGFL 370
+ EKV +D M +ERL ++ S R RVV+I E+ IVG L
Sbjct: 255 NGVEKVKIKDHDDELGGAMEHLERLEIKSVASFKGDSRTRARVVAI-EKRAEISKIVGIL 313
Query: 371 NVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEE 430
W + KN +S Y P + P + + DL D + E
Sbjct: 314 RAPGW----------SLKNVEYVS-KKSSYAIFIPKDKRLPFITIHKNDLSDLSGENWIE 362
Query: 431 GDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPES 490
+L + I W+ S +P + G +VE NA+L EN I S FS E
Sbjct: 363 NILKHHDQLFSVEITRWSIYSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEV 422
Query: 491 LSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIAD 550
L+CLP W + EE+ R+DLRN I TIDP TA DLDDA+S L +G VGVHIAD
Sbjct: 423 LNCLPPDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIAD 482
Query: 551 VSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNS 610
V++FV P +ALD EA R+T+VY++Q+ IPMLP LL E + SLNP V+RLAFS+FW L+S
Sbjct: 483 VTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDS 542
Query: 611 AG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK-FDVESSNTLGEGWPQLYGQFEWSDVV 668
G ++ RW G+TVI++C +L+Y AQ +I+GK +D +G G DV
Sbjct: 543 NGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIG-------GTHTPKDVE 595
Query: 669 RSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFML 728
SI +L E+S+ L+ RF GA+ + +++ F DEYG P + + D N L EEFML
Sbjct: 596 TSILTLCEISRKLRKDRFAKGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEEFML 655
Query: 729 LANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQA 788
LAN++ AE I++ F +++LLRRH +P +++ EF F D SSS F+ S+ +
Sbjct: 656 LANRSVAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRL 715
Query: 789 REKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYP 848
R ++ L ++ N A R + A YFC+GDF + TDW HYAL+F YTHFTSP+RRYP
Sbjct: 716 RSTFNEE--LVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYP 773
Query: 849 DLVVHRTLNAALE 861
D++VHR L +L+
Sbjct: 774 DIIVHRLLERSLK 786
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 302 bits (774), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 176/469 (37%), Positives = 258/469 (55%), Gaps = 18/469 (3%)
Query: 401 IQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLH 460
+ T + P++++ D+ R ++ E L A+I +W ES + ++
Sbjct: 226 VLFVATDSRVPRILIPKSDVDKEFFSRPKD----FERFLYTAKITDWRAESVYADGRLVK 281
Query: 461 VFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVP---WEVPQEELLSRKDLRNFCI 517
+ G GE++ + I+YE+ I FS E L LP W+VP E R+D R+ +
Sbjct: 282 LLGMSGEIDTETERIVYEHQIDHREFSDECLESLPITTAENWKVPDAEFEYRRDFRSDIV 341
Query: 518 FTIDPSTATDLDDALSIERLSDGISR------VGVHIADVSYFVLPGTALDIEAQVRSTS 571
FTIDP TA DLDDAL + + D + +GVHIADV++F+ GT LD A R S
Sbjct: 342 FTIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNS 401
Query: 572 VYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLS 631
Y+ Q IPMLP +L E++ SLNPGVDRL+FS + ++ ++ D W GR+VIRS KL+
Sbjct: 402 TYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLA 461
Query: 632 YEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGAL 691
YEHAQD I+ E T E P + ++ L+ ++++L+ KR GAL
Sbjct: 462 YEHAQDFIENP---EKDFTCDE-LPDISDGNTPFEIKEKTLMLHRIAQVLRQKREDSGAL 517
Query: 692 RLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRH 751
R+E + F DE P + +D N L EEFMLLAN A+ IA FP+ ALLR H
Sbjct: 518 RIELPRLKFALDEDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENFPEHALLRNH 577
Query: 752 PAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQ 811
P P + +++ C++ G LD +SG SL + + K + D + ++ + +PMQ
Sbjct: 578 PPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQVISSLTIKPMQ 637
Query: 812 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
A YFC+ + + + H+AL YTHFTSP+RRYPD++VHR L AAL
Sbjct: 638 QAKYFCTFEMP-LSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAAL 685
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 158 KIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYC-KIEGV-QTDVLITGIAAQNRA 215
KIF + S E + +E G FK + R+N N E + +G DVL+ G +NRA
Sbjct: 63 KIFTEYISKEETDAGIEDGSMFKGVLRINPKNYQECFLDHPKGTNHPDVLVLG-QDRNRA 121
Query: 216 VEGDFVLIK-----------VDRLSLWAKMKGFSNNSSIVEDSNLP--TEANGMHSDI 260
++GD V +K V+ + WA+ K NS D+N P TE + ++I
Sbjct: 122 MQGDVVAVKIKPKEDWLVNYVEYVKWWAEHKKGDRNSGKT-DNNSPNKTEKRCLRNEI 178
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 189/523 (36%), Positives = 269/523 (51%), Gaps = 65/523 (12%)
Query: 348 RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGG-SRKDAKKNRSSLSVPDREYIQLTPT 406
RPTGRVV II+R+ W Y G S+ D K++R L TP
Sbjct: 340 RPTGRVVGIIKRN--------------WRPYCGMLSKSDIKESRRHL---------FTPA 376
Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDAT-IEMELVAARIDEWNEESPFPQAHVLHVFGRG 465
+ P++ R+E A+ +E + ID W S +P H + G
Sbjct: 377 DKRIPRI-------------RIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDV 423
Query: 466 GEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTA 525
GE E + +L E+ + FS LS LP +PW + +E++ +R+DLR+ C+ ++DP
Sbjct: 424 GEKETETEVLLLEHDVPHQPFSQAVLSFLPRMPWSITEEDMKNREDLRHLCVCSVDPPGC 483
Query: 526 TDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVL 585
TD+DDAL LS+G VGVHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P L
Sbjct: 484 TDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPEL 543
Query: 586 LSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDV 645
LS + SL VDRLAFS W++N +++ ++VI S L+Y AQ ID
Sbjct: 544 LSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRID----- 598
Query: 646 ESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-E 704
S + + D+ S++ L +++KILK R GAL L + + F D E
Sbjct: 599 --SAAMND------------DITTSLRGLNQLAKILKKGRIEKGALTLSSPEIRFHMDSE 644
Query: 705 YGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEA 764
P D + N + EEFMLLAN + A+ I F + ALLR+HPAP
Sbjct: 645 THDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYDILVK 704
Query: 765 FCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQLASYFCSGDFKD 823
LQ+ T ++ SL++A D+ + L+ ATR M A YFCSG
Sbjct: 705 AAKSKNLQIKTDTAKSLADSLDRAESP---DFPYLNTLLRILATRCMMQAVYFCSG---M 758
Query: 824 DTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLY 866
D D+ HY LA P+YTHFTSP+RRY D++VHR L A+ A+ Y
Sbjct: 759 DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGADCTY 801
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEG---VQTDVLITGIAAQNRA 215
IF+ H + + + ++ G + +R + N LEA I G + ++LI GI NRA
Sbjct: 227 IFSEHLPLSKLQQGIKSGSYLQGTFRASRENYLEATVWIHGDKEEEKEILIQGIKHLNRA 286
Query: 216 VEGDFVLIKVDRLSLWA 232
V D V +++ S W
Sbjct: 287 VHEDIVAVELLPRSQWV 303
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 186/522 (35%), Positives = 287/522 (54%), Gaps = 38/522 (7%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++++ RD +V F ++ + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSIEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK I+ ++ +A + +V RID W S +P H + V GR G++
Sbjct: 373 RIPK-----------IRISTQQAEALQDFRVVV-RIDSWESTSMYPNGHFVRVLGRIGDL 420
Query: 469 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLR-NFCIFTIDPS 523
E +I IL EN+I FS + +P PW+V +E R+DLR +F+IDPS
Sbjct: 421 EGEIATILVENSISVVPFSEAQMCEMPVNTPENPWKVSSQEEREREDLRKTHLVFSIDPS 480
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DD LS+ L +G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLP 540
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLN-SAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 642
+LS +V SL GVDR A S+ W+L+ ++ ++ W GRT+IRS KL YE AQD++DG
Sbjct: 541 AILSADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGN 600
Query: 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 702
F V + + Q + ++V +I+ L ++++ ++ KR + GAL LE +
Sbjct: 601 FSVVKDIPEFKDLDEKSRQAKLEELVWAIRKLTDIARHIRAKRDSCGALELEGVEVRIQL 660
Query: 703 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 762
DE +D + +++ E M+LAN A+ I +FP ALLRRHP P+ E
Sbjct: 661 DEKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRRHPPPHQEFFSEL 720
Query: 763 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 822
G +DT S+ SL+ A + +D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKALADSLDNAND--PNDPIVNKLLRSMATQAMSNALYFSTGSCA 778
Query: 823 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
++ ++ HY LA YTHFTSP+RRY D++VHR L AA+ +K
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAAISKDK 819
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 154 EARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHN-RLEAYCKIEGVQT-------DVL 205
E+ K + H +E + ++ G + VN H ++EA+ +++G + DVL
Sbjct: 219 ESHGKEYPEHVPLEVLEAGIKSGRYIQGTLNVNKHRAQIEAFVRLQGASSKDSDLVSDVL 278
Query: 206 ITGIAAQNRAVEGDFVLIKVDRLSLW 231
I G+ A+NR++ GD V++++ S W
Sbjct: 279 IHGMKARNRSIHGDVVVVELLPKSEW 304
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 293 bits (749), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 191/522 (36%), Positives = 270/522 (51%), Gaps = 63/522 (12%)
Query: 348 RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGG-SRKDAKKNRSSLSVPDREYIQLTPT 406
+PTGRVV II+R+ W Y G S+ D K++R L TP
Sbjct: 340 KPTGRVVGIIKRN--------------WRPYCGMLSKSDIKESRRHL---------FTPA 376
Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRG 465
+ P++ R+E A T+E + ID W S +P H + G
Sbjct: 377 DKRIPRI-------------RIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDV 423
Query: 466 GEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTA 525
GE E + +L E+ + FS LS LP +PW + ++++ +R+DLR+ CI ++DP
Sbjct: 424 GEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGC 483
Query: 526 TDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVL 585
TD+DDAL L +G VGVHIADVS+F+ PG ALD E+ R T+VY+ +++I M+P L
Sbjct: 484 TDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPEL 543
Query: 586 LSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDV 645
LS + SL VDRLAFS W++N +++ ++VI S L+Y AQ ID
Sbjct: 544 LSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRID----- 598
Query: 646 ESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-E 704
S+N D+ S++ L +++KILK +R GAL L + + F D E
Sbjct: 599 -SANM-------------NDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSE 644
Query: 705 YGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEA 764
P D + N + EEFMLLAN + A+ I F + ALLR+HPAP
Sbjct: 645 THDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVK 704
Query: 765 FCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD 824
L++ T ++ +SL+QA E Y L +L ATR M A YFCSG D
Sbjct: 705 AARSRNLEIKTDTAKSLAESLDQA-ESPTFPY-LNTLLRILATRCMMQAVYFCSG---MD 759
Query: 825 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLY 866
D+ HY LA P+YTHFTSP+RRY D++VHR L A+ A+ Y
Sbjct: 760 NDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTY 801
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEG---VQTDVLITGIAAQNRA 215
IF+ H + + + ++ G + +R + N LEA I G ++++ G+ NRA
Sbjct: 227 IFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNRA 286
Query: 216 VEGDFVLIKVDRLSLWA 232
V D V +++ S W
Sbjct: 287 VHEDIVAVELLPKSQWV 303
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 184/522 (35%), Positives = 280/522 (53%), Gaps = 38/522 (7%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK+ + + T++ V RID W S +P H + V GR G++
Sbjct: 373 RIPKIRISTQQA------------ETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDL 420
Query: 469 EPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEELLSRKDLR-NFCIFTIDPS 523
E +I IL EN+I FS + +P PW+V EE RKDLR + +F+IDP
Sbjct: 421 EGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVFSIDPK 480
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DD LS+ L++G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLP 540
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 642
+LS ++ SL GVDR A SI W+L+ A ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 702
V + + Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 LSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQL 660
Query: 703 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 762
D+ +D + +++ E M+LAN A+ I +FP ALLR+HP P+ E
Sbjct: 661 DDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSEL 720
Query: 763 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 822
G +DT S+ SL+ A + D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKTLADSLDNAND--PHDPIVNRLLRSMATQAMSNALYFSTGSCA 778
Query: 823 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 94 MPTMHINEEESA--ESGSTQSQLLLATDLCGSIISRSCPEPIANDSSCWA-YTNKDDNPS 150
MP + + E+E A + GS + + T + + P+ A C + ++ + +
Sbjct: 158 MPIVMVTEDEEAIQQYGSETEGVFVIT--FKNYLDNFWPDLKAAHELCDSILQSRREREN 215
Query: 151 HQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHN-RLEAYCKIEGVQT------- 202
E+ K + H +E + ++ G + + VN H ++EA+ +++G +
Sbjct: 216 ESQESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVS 275
Query: 203 DVLITGIAAQNRAVEGDFVLIKV 225
D+LI G+ A+NR++ GD V++++
Sbjct: 276 DILIHGMKARNRSIHGDVVVVEL 298
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 185/526 (35%), Positives = 287/526 (54%), Gaps = 46/526 (8%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK I+ ++ +A + +V RID W S +P H + V GR G++
Sbjct: 373 RIPK-----------IRISTQQAEALQDFRVVV-RIDSWETTSVYPNGHFVRVLGRIGDL 420
Query: 469 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPS 523
E +I IL EN+I FS + +P PW+V +E R+DLR+ +F+IDP
Sbjct: 421 EGEIATILVENSINVVPFSEAQMCEMPVNTAENPWKVSPKEEQERRDLRSTHLVFSIDPK 480
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DDALS+ L++G +GVHIADV++FV P + +D+EA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLP 540
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLN-SAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 642
+LS ++ SL GVDR A S+ W+L+ ++ ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 643 F----DVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKP 698
F D+ TL E Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 FSIVDDIPEFKTLEEQ----NRQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEV 656
Query: 699 VFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRK 758
D+ +D + +++ E M+LAN A+ I +FP ALLR+HP P+
Sbjct: 657 RVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEF 716
Query: 759 LREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCS 818
E G +DT S+ SL+ A + D ++ +L + AT+ M A YF +
Sbjct: 717 FSELRECAKAKGFFIDTRSNKTLADSLDSAND--PSDPLVNKLLRSMATQAMSNALYFST 774
Query: 819 GDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
G ++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 775 GSCAEE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 114 LLLATDLCGSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEAL 173
L A +LC SII ++ + S E K + H +E + +
Sbjct: 196 LKAAHELCDSIIQ-----------------SRRERESESQETHGKEYPEHLPLEVLEAGI 238
Query: 174 EKGDAFKALYRVNAHN-RLEAYCKIEGVQT-------DVLITGIAAQNRAVEGDFVLIKV 225
+ G + + VN H ++EA+ +++G + D+LI G A+NR++ GD V++++
Sbjct: 239 KSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSGLVSDILIHGSKARNRSIHGDVVVVEL 298
Query: 226 DRLSLW 231
S W
Sbjct: 299 LPKSEW 304
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 181/522 (34%), Positives = 282/522 (54%), Gaps = 38/522 (7%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK I+ ++ +A + +V RID W S +P H + V GR G++
Sbjct: 373 RIPK-----------IRISTQQAEALQDFRVVV-RIDSWEATSVYPNGHFVRVLGRIGDL 420
Query: 469 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPS 523
E +I IL EN+I FS + +P PW+V +E RKDLR +F+IDP
Sbjct: 421 EGEIATILVENSISVVPFSEAQMCEMPVNTPENPWKVSPKEEQERKDLRTTHLVFSIDPK 480
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DD LS+ L++G +GVHIADV++FV P + +D+EA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLP 540
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLN-SAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 642
+LS ++ SL GVDR A S+ W+L+ ++ ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 702
F + + + Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 FSIVDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEVRVQL 660
Query: 703 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 762
D+ D + +++ E M+LAN A+ I +FP ALLR+HP P+ E
Sbjct: 661 DDKKNIRDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSEL 720
Query: 763 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 822
G +DT S+ SL+ A + D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKTLADSLDSAND--PKDPLVNKLLRSMATQAMSNALYFSTGSCA 778
Query: 823 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 114 LLLATDLCGSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEAL 173
L A DLC SI+ ++ + + E K + H +E + +
Sbjct: 196 LKAAHDLCDSILQ-----------------SRRERETESQETHGKEYPEHLPLEVLEAGI 238
Query: 174 EKGDAFKALYRVNAHN-RLEAYCKIEGVQT-------DVLITGIAAQNRAVEGDFVLIKV 225
+ G + + VN H ++EA+ ++ G + D+LI G A+NR++ GD V++++
Sbjct: 239 KSGRYIQGILNVNKHRAQIEAFVRLHGASSKDSGLVSDILIHGSKARNRSIHGDVVVVEM 298
Query: 226 DRLSLW 231
S W
Sbjct: 299 LPKSEW 304
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 184/522 (35%), Positives = 279/522 (53%), Gaps = 38/522 (7%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++++ RD +V F + + +G K+A+K I +TP
Sbjct: 330 PTGRVVGILQKN-WRDYVVTFPSKEE-VQSQG---KNAQK------------ILVTPWDY 372
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK+ + + T++ V RID W S +P H + V GR G++
Sbjct: 373 RIPKIRISTQQA------------ETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDL 420
Query: 469 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLR-NFCIFTIDPS 523
E +I IL EN+I FS + +P PW+V EE RKDLR + +F+IDP
Sbjct: 421 EGEIATILVENSISVIPFSEAQMCEMPVNTPENPWKVSPEEEQKRKDLRKSHLVFSIDPK 480
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DD LS+ L++G +GVHIADV++FV P + +DIEA+ R+T+ Y+ R+ MLP
Sbjct: 481 GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLP 540
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGK 642
+LS ++ SL GVDR A SI W+L+ A ++ W GRT+IRS KL YE AQ+++DG
Sbjct: 541 SVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGN 600
Query: 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 702
V + + Q + ++V +I L ++++ ++ KR GAL LE +
Sbjct: 601 LSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVRVQL 660
Query: 703 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 762
D+ +D + +++ E M+LAN A+ I +FP ALLR+HP P+ E
Sbjct: 661 DDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSEL 720
Query: 763 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 822
G +DT S+ SL+ A D ++ +L + AT+ M A YF +G
Sbjct: 721 RECAKAKGFFIDTRSNKTLADSLDNANG--PHDPIVNRLLRSMATQAMSNALYFSTGSCA 778
Query: 823 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
++ ++ HY LA YTHFTSP+RRY D+VVHR L AA+ +K
Sbjct: 779 EE-EFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 154 EARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHN-RLEAYCKIEGVQT-------DVL 205
E+ K + H +E + ++ G + + VN H ++EA+ +++G + D+L
Sbjct: 219 ESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDIL 278
Query: 206 ITGIAAQNRAVEGDFVLIKV 225
I G+ A+NR++ GD V++++
Sbjct: 279 IHGMKARNRSIHGDVVVVEL 298
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 276 bits (706), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 273/518 (52%), Gaps = 41/518 (7%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++R+ RD + F + +G K+A++ + + P
Sbjct: 324 PTGRVVGILQRN-WRDYVATF-PAKEDIETQG---KNAQR------------VLVMPWDY 366
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK I+ ++ +A + +V RID W S +P H + V GR G +
Sbjct: 367 RIPK-----------IRISTQQAEALQDYRVVV-RIDSWESTSLYPNGHFVRVLGRTGNL 414
Query: 469 EPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEELLSRKDLR-NFCIFTIDPS 523
E +I IL EN+I + FS L+ +P PW+V EE R DLR +F+IDP
Sbjct: 415 EAEIATILVENSISVNPFSEAQLAEMPSNTPESPWQVKPEEG-DRLDLRKTHLVFSIDPK 473
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DDALSI +L G +GVHIADV++FV P T DIEA+ R+T+ Y+ R+ MLP
Sbjct: 474 GCEDVDDALSIRKLPSGHLELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLP 533
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGK 642
++LS ++ SL GVDR A S+ W+++S+ + R W GRT+IRS KLSYE AQ ++DG
Sbjct: 534 LILSADLCSLLGGVDRYAVSVIWEMDSSTYEIRRVWYGRTIIRSSYKLSYEVAQQLMDG- 592
Query: 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 702
D+E NT E P ++ ++ L EV+ + +R GAL LE +
Sbjct: 593 -DLEPLNTEMELHPLKQDPVRLEQLLWAVGKLTEVAHATRMRRDMSGALELEGVEVRVQL 651
Query: 703 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 762
E + D V ++ E M+LAN A+ I +P ALLR HP +E
Sbjct: 652 GEKHSIDDLVPKQPLQMHETIAECMILANHWVAKKIWECYPQHALLRLHPPARQEFFQEL 711
Query: 763 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 822
+ G +DT S+ SL+QA + D ++ +L AT+ M A YF +G +
Sbjct: 712 KECAKARGFSIDTRSNKALADSLDQAND--PSDPLVNQLLRMMATQAMSNARYFSTGSYT 769
Query: 823 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
+D ++ HY LA YTHFTSP+RRY D+VVHR L AA+
Sbjct: 770 ED-EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAV 806
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 154 EARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHN-RLEAYCKIEG-------VQTDVL 205
E K + H +E + ++ G + + VN H +LE + +++G +Q+D+L
Sbjct: 214 EGNGKEYPEHLPLEILEAGIKSGRYQQGVLSVNKHRAQLEGFVRLQGLGGKETDIQSDIL 273
Query: 206 ITGIAAQNRAVEGDFVLIKVDRLSLWAKMKG 236
I G +NRA+ GD V +++ S W G
Sbjct: 274 IYGTKPRNRAIHGDLVAVELLSRSEWKGRNG 304
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 182/518 (35%), Positives = 267/518 (51%), Gaps = 41/518 (7%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++R+ RD +V F K + + + + + P
Sbjct: 325 PTGRVVGIMQRN-WRDYVVTF----------------PAKEDTETQGKNTQKVLVMPWDY 367
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK I+ ++ +A ++ V RID W S +P H + GR G +
Sbjct: 368 RIPK-----------IRISTQQAEA-LQNYRVVVRIDSWESNSLYPNGHFVRALGRAGNL 415
Query: 469 EPQINAILYENAICCSGFSPESLSCLPC----VPWEVPQEELLSRKDLR-NFCIFTIDPS 523
E +I IL EN+I + FS L+ +P PW+V EE R DLR +F+IDP
Sbjct: 416 EAEIATILVENSISLNPFSEAQLAEMPSNTHENPWQVKPEE-GDRLDLRETHLVFSIDPK 474
Query: 524 TATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLP 583
D+DDALSI L G +GVHIADV++FV T DIEA+ R+T+ Y+ R+ MLP
Sbjct: 475 GCEDVDDALSIRVLPSGDLELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLP 534
Query: 584 VLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR-WIGRTVIRSCCKLSYEHAQDIIDGK 642
++LS ++ SL VDR A S+ W+++ + + R W GRT+IRS KLSYE AQ ++DG
Sbjct: 535 LILSADLCSLLGAVDRYAVSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDG- 593
Query: 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLF 702
D+E +T E P ++ ++ + EV+ + +R GAL LE +
Sbjct: 594 -DLEPLSTEKELHPLKQDPARLQQLLWAVGKMTEVAHATRMRRNMSGALELEGVEVRVQL 652
Query: 703 DEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREF 762
E + D V ++ E M+LAN A+ I ++P ALLR HP P +E
Sbjct: 653 GEKHSIDDLVPKQPLQVHETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQEL 712
Query: 763 EAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFK 822
+ G +DT S+ SL+QA + D ++ +L AT+ M A YF +G +
Sbjct: 713 KECAKARGFSIDTRSNKALADSLDQAHD--PSDPLVNQLLRMMATQAMSNARYFSTGSYT 770
Query: 823 DDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
+D ++ HY LA YTHFTSP+RRY D+VVHR L AA+
Sbjct: 771 ED-EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAV 807
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 154 EARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHN-RLEAYCKIEG-------VQTDVL 205
E+ K + H +E + ++ G + + VN H +LE++ +++G +Q+D+
Sbjct: 215 ESNGKEYPEHLPLEILEAGIKSGRYKQGVLSVNKHRAQLESFVRLQGLGGKETDIQSDIF 274
Query: 206 ITGIAAQNRAVEGDFVLIKVDRLSLWAKMKG 236
I G +NRA+ GD V +++ S W G
Sbjct: 275 IHGTKPRNRAIHGDLVAVELLPKSEWKGRTG 305
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 188/534 (35%), Positives = 273/534 (51%), Gaps = 68/534 (12%)
Query: 346 TKR---PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQ 402
TKR PT +VV I++R+ R VG ++ KGGS+ + +
Sbjct: 353 TKRNAHPTAKVVGILKRNWR--PYVGHVDNATIAQSKGGSQ---------------QTVL 395
Query: 403 LTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVF 462
LTP + PK+ + P + +R + ID W+ S +P+ H +
Sbjct: 396 LTPMDRRVPKIRFRTRQAPRLVGRR------------IVVAIDLWDASSRYPEGHFVRDL 443
Query: 463 GRGGEVEPQINAILYENAICCSGFSPESLSCLP--CVPWEVPQEEL----LSRKDLRNFC 516
G E + A+L E + F L CLP W+VP ++ +RKD R+
Sbjct: 444 GEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKL 503
Query: 517 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQ 576
I +IDP D+DDAL L +G VGVHIADV++FV P T++D EA R T+VY++
Sbjct: 504 ICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVD 563
Query: 577 RKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQ 636
++I MLP+LL ++ SL P V+R AFS W+++ +++ ++VI S SY AQ
Sbjct: 564 KRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQ 623
Query: 637 DIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENS 696
ID D + + L +G ++ L ++SKILK KR +GAL L +
Sbjct: 624 ARID---DQKMQDPLTQG----------------MRVLLKLSKILKQKRMDEGALNLASP 664
Query: 697 KPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAP- 754
+ D E P D + + N L EEFMLLAN + A+ I AFP +A+LRRH AP
Sbjct: 665 EVRIQTDNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPP 724
Query: 755 --NMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQ 811
N L++ C L+ DTS S +SL++ + K+ Y F+ L+ TR M
Sbjct: 725 LTNFDSLQDILRVCKGMHLKCDTSKS--LAKSLDECVDP-KEPY--FNTLLRILTTRCML 779
Query: 812 LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKL 865
A YFCSG F D+ HY LA P+YTHFTSP+RRY D++ HR L AA++ E +
Sbjct: 780 SAEYFCSGTFA-PPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETI 832
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
++ HWSM + ++ G+ K L ++ +N LE + G VL++G NRAV+G
Sbjct: 247 VYELHWSMSRLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQG 306
Query: 219 DFVLIKVDRLSLW 231
D V I++ W
Sbjct: 307 DIVCIQILPQDQW 319
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 263 bits (673), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 180/525 (34%), Positives = 273/525 (52%), Gaps = 46/525 (8%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
PTGRVV I++R+ RD +V + + S+K I + P
Sbjct: 324 PTGRVVEILQRN-WRDYVVTLPPFEEMQSQSRNSQK----------------ILVVPWDY 366
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
+ PK I+ ++ +A ++ + V R+D W S +P H + V G+ GE+
Sbjct: 367 RIPK-----------IRISTQQAEA-LQDQRVIVRLDSWESTSVYPNGHFVRVLGKSGEL 414
Query: 469 EPQINAILYENAICCSGFSPESLSCLPCV----PWEVPQEELLSRKDLRN-FCIFTIDPS 523
E +I IL EN I FS L +P PW++ E+ SR+DLR+ +F+IDP
Sbjct: 415 ETEIQTILVENCIHVPPFSEAQLREMPVNTEENPWQMDSNEVSSRRDLRDSHLVFSIDPK 474
Query: 524 TATDLDDALSIERLSDGIS-RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPML 582
D+DD LS+ L G +GVHIADV++FV G+ D+EA+ R+T+ Y+ R+ ML
Sbjct: 475 GCEDVDDTLSVRTLPGGKRLELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDML 534
Query: 583 PVLLSEEVGSLNPGVDRLAFSIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDG 641
P +LS ++ SL GVDR A S+ W+L++ +V W GRT+IRS +L YE AQ +++G
Sbjct: 535 PAVLSADLCSLLGGVDRYAMSVLWELDAETLEVCSVWFGRTLIRSSYQLHYELAQSLLNG 594
Query: 642 -KFDVESSNTL-GEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPV 699
+ +V N L G Q + S++++++++L V++ L+ +R GAL LE +
Sbjct: 595 EEVEVPELNPLKGSQRDQ-----KMSELLQALETLTRVARHLRAQRDKGGALELEGVEVR 649
Query: 700 FLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKL 759
DE V +++ E M+ AN A I +FP ALLR HP P
Sbjct: 650 AQLDEEKNITALVPKQPLEVHETVAECMIYANHWVARKIQESFPHHALLRHHPPPKQEFF 709
Query: 760 REFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSG 819
HG +DT S+ SLE+A + D ++ +L AT+ M A YF +G
Sbjct: 710 NHLIDSAKAHGFSIDTRSNRALADSLERAVD--PRDPLVNRLLRMMATQAMSNALYFSTG 767
Query: 820 DFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
++ + HY LA YTHFTSP+RRY D++VHR L AA++ EK
Sbjct: 768 SCPEE-QYYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEK 811
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 158 KIFAPHWSMEAVNEALEKGDAFKALYRVNAHN-RLEAYCKIEG-------VQTDVLITGI 209
K++ H E + ++ G + + VN H + EA+ + EG + +DVLI G
Sbjct: 217 KVYTEHLPAEVLEAGIKSGRYIQGILSVNKHRAQHEAFVRYEGSASKNTELNSDVLINGA 276
Query: 210 AAQNRAVEGDFVLIKV 225
+NRAV GD V+I++
Sbjct: 277 KHRNRAVHGDVVVIEL 292
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 259 bits (663), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 235/444 (52%), Gaps = 27/444 (6%)
Query: 427 RLEEGDA-TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSG 485
R+E A T+ + + ID W +S +P H + G G E + +L E+ I +
Sbjct: 393 RIETEQAETLSQQRIVVAIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAP 452
Query: 486 FSPESLSCLPCVPWEVPQEE---LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS 542
FS L CLP WE E L R DLR+ I ++DP TD+DDAL +++ + +
Sbjct: 453 FSESVLDCLPREEWEPDLTENRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLF 512
Query: 543 RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAF 602
VGVHIADV++FV PGTA+D EA +R T+VY+ R+I MLP LLS + SL +R AF
Sbjct: 513 EVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAF 572
Query: 603 SIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQF 662
S W + S+ D+ +++I+S L+YE AQ+IID P+
Sbjct: 573 SCIWTMTSSADIQSVKYHKSLIKSKAALTYEKAQEIIDD--------------PK----- 613
Query: 663 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNF 721
E +DV ++ L ++SK+L +R +GAL L +S+ F D E TP + D +
Sbjct: 614 EQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKKVMEKQHLDTHS 673
Query: 722 LFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 781
+ EEFMLLAN + AE I +PD ALLRRHP P + G ++ S
Sbjct: 674 MVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGL 733
Query: 782 HQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFT 841
SL + + K + +L +L TR M A YF +G + H+ LA +YTHFT
Sbjct: 734 ADSLNRCVD--KKNPMLNRLLRMLTTRCMTQAVYFSAGTVP-VPQYQHFGLACAIYTHFT 790
Query: 842 SPLRRYPDLVVHRTLNAALEAEKL 865
SP+RRY D++VHR L AA+ A+ +
Sbjct: 791 SPIRRYADVIVHRLLAAAIGADDI 814
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 259 bits (661), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 232/751 (30%), Positives = 344/751 (45%), Gaps = 136/751 (18%)
Query: 160 FAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGD 219
F ++S V L+ G ++ +++ +N LE + VLI G NRA GD
Sbjct: 255 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGD 314
Query: 220 FVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLL 279
V++++ S W SSIV DS H D+ D+
Sbjct: 315 QVIVELLPQSEWKA------PSSIVLDSE--------HFDV---NDNPDI---------- 347
Query: 280 SEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSA 339
E G DDD ++E +S +T +S Q+ + A
Sbjct: 348 -EAG---DDDDNNE---------------------SSSNTTVISDKQRR-----LLAKDA 377
Query: 340 MISSYPTK-RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDR 398
MI+ K +PT +VV I RS W Y G + +SS +
Sbjct: 378 MIAQRSKKIQPTAKVVYIQRRS--------------WRQYVGQLAPSSVDPQSSST---- 419
Query: 399 EYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHV 458
+ ++++ K LP ++ R ++ +V + ID W +P H
Sbjct: 420 ----------QNVFVILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHF 467
Query: 459 LHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV------------PWEVPQEEL 506
+ G + + A+L E+ + FS + L CLP P V ++ L
Sbjct: 468 VRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPL 527
Query: 507 LS-RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
L+ RKDLR+ I +IDP D+DDAL ++L +G VGVHIADV++FV PGTALD E
Sbjct: 528 LTKRKDLRDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEG 587
Query: 566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
R TSVY++ ++I MLP+LL ++ SL P VDR AFS+ W+L+ + ++V+ ++VIR
Sbjct: 588 AARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIR 647
Query: 626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
S SYE AQ ID K ++ L G +++L ++S LK KR
Sbjct: 648 SREAFSYEQAQLRIDDK---TQNDELTMG----------------MRALLKLSVKLKQKR 688
Query: 686 FTDGALRLENSK-PVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 744
GAL L + + V + E P + + N L EEFMLLAN + A I AFP
Sbjct: 689 LEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQ 748
Query: 745 SALLRRHPAP---NMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 801
+A+LRRH AP N L E ++ + + SS SL++ + +D Y F+
Sbjct: 749 TAMLRRHAAPPSTNFEILNEM--LNTRKNMSISLESSKALADSLDRCVDP-EDPY--FNT 803
Query: 802 LIN-YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
L+ +TR M A YF SG + D+ HY LA +YTHFTSP+RRY D+V HR L A+
Sbjct: 804 LVRIMSTRCMMAAQYFYSGAYS-YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAI 862
Query: 861 EAEKLYWKHR-----RMLPKNNHREGVRGRF 886
E L HR M+ +N +R+ +F
Sbjct: 863 GYEPLSLTHRDKNKMDMICRNINRKHRNAQF 893
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 166/579 (28%), Positives = 268/579 (46%), Gaps = 78/579 (13%)
Query: 303 EGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPR 362
+G+ ++ S SD + ++ N MN + + S R G V+ I+ER+ +
Sbjct: 81 KGFAFLLPEDTSLSDVF--IPPNELNTAMNGDIVMVRLNSQSSGSRQEGTVIRILERAIQ 138
Query: 363 RDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPD 422
R +VG + F + +PD + I PK K
Sbjct: 139 R--VVGTYTETRNFGF---------------VIPDDKKITSDIFIPKNGK---------- 171
Query: 423 SIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAIC 482
+ E V ++ + E + V + G + I ++++++ +
Sbjct: 172 ---------NGAAEGHKVVVKLTSYPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLP 222
Query: 483 CSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS 542
F +++ P + +++L R+DLR+ I TID + A DLDDA+++ +L DG
Sbjct: 223 GE-FPADAMEQASSTPDTIDEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSY 281
Query: 543 RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAF 602
++GVHIADVS++V + +D EA R TSVY++ R IPM+P LS + SLNP VDRL
Sbjct: 282 KLGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTL 341
Query: 603 SIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQF 662
S +NS G V + I ++VI++ +++Y I+ V+ L + + L F
Sbjct: 342 SCEMTINSQGQVTEHEIFQSVIKTTERMTYSDVNKIL-----VDDDEELKQKYEPLVPMF 396
Query: 663 EWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 722
K + +++IL+DKR GA+ + + L D+ G D V+ R L
Sbjct: 397 ---------KDMERLAQILRDKRMDRGAVDFDFKEAKVLVDDEGAVKDVVIRERSVAEKL 447
Query: 723 FEEFMLLANKTAAEVIA-RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQF 781
EEFML+AN+T AE P + R H PN KL++F F + G + ++G
Sbjct: 448 IEEFMLVANETVAEHFHWMNVP--FIYRIHEEPNAEKLQKFLEFVTTFGYVV-KGTAGNI 504
Query: 782 H----QSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVY 837
H QS+ A ++ V+ +++ R M+ A Y D GH+ L+ Y
Sbjct: 505 HPRALQSILDAVRDRPEETVISTVML----RSMKQAKY-------DPQSLGHFGLSTEFY 553
Query: 838 THFTSPLRRYPDLVVHRTLNAAL------EAEKLYWKHR 870
THFTSP+RRYPDL+VHR + L EA + W R
Sbjct: 554 THFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAER 592
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 199/379 (52%), Gaps = 32/379 (8%)
Query: 482 CCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 541
S F E L VP EVP+ E++ R D RN FTID + A DLDDA+ +RL +G
Sbjct: 232 IVSEFPKEVLDQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGN 291
Query: 542 SRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLA 601
+GVHIADVS++V + LD EA R TSVY+ R +PMLP LS + SLNP ++RL
Sbjct: 292 YELGVHIADVSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLT 351
Query: 602 FSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQ 661
S +++ G V++ I +++I++ +++Y+ +I G E + Y +
Sbjct: 352 QSCVMEISPEGRVINYQISQSIIKTTERMTYDAVNQMIAGD----------EAALENYAK 401
Query: 662 FEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNF 721
+ S+K + E+ IL+ R GA+ + + + +E G P + R
Sbjct: 402 -----IADSVKIMVELHHILEAMRKRRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAER 456
Query: 722 LFEEFMLLANKTAAEVI-ARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ 780
+ E FML AN+T A A P + R H P +L+ F F + G+Q++ +S+G
Sbjct: 457 MIESFMLEANETVATHFEAHGLP--FIYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGI 514
Query: 781 FHQSLEQAREKLK---DDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVY 837
+ L+ +K+K + VL +L+ R MQ A Y + + GH+ LA Y
Sbjct: 515 DQKVLQAFMKKIKGQPGEMVLSTMLL----RSMQQARY-------SENNEGHFGLAAENY 563
Query: 838 THFTSPLRRYPDLVVHRTL 856
THFTSP+RRYPDL+VHR +
Sbjct: 564 THFTSPIRRYPDLLVHRLI 582
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 260/536 (48%), Gaps = 73/536 (13%)
Query: 349 PTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHP 408
P GRVV ++ER +R +VG F++KG VPD
Sbjct: 121 PRGRVVRVLERGLKR--VVGV------FDHKGTF---------GFVVPDD---------- 153
Query: 409 KYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEV 468
PK+ P++I D + V A I ++ P+A V+ V G +
Sbjct: 154 --PKIAYDFYVAPENI-------DGAKPNQKVIAEILKYPSPGKNPEAKVVKVLGDLDDP 204
Query: 469 EPQINAILYENAICCSG-FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATD 527
+ +++ ++ + G F E + +P V +++L+ RKDLR+ I TID A D
Sbjct: 205 SIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKDLRDKVIVTIDGEDAKD 264
Query: 528 LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLS 587
DDA+S+E+L +G +GVHIADVS++V G+ALD EA R TSVY++ IPMLP LS
Sbjct: 265 FDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVYLIDTVIPMLPFRLS 324
Query: 588 EEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVES 647
+ SL G DRL S+ +++ G VV + +VI+S ++ YE + + E
Sbjct: 325 NGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIYERVNEFL------ED 378
Query: 648 SNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGA-LRLENSKPVFLFDEYG 706
+++ E P + D+ I + E+++IL++ R GA L +E+ + + DE G
Sbjct: 379 PSSMKEYEP-------FKDL---IYNAVELAEILREARRKRGAILDIESDEVKVILDENG 428
Query: 707 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA-FPDSALLRRHPAPNMRKLREFEAF 765
D V R L EEFM+ AN+T AE+ A P + R H P+ + + + +
Sbjct: 429 QVVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLP--FMYRVHEEPDPETIFQLKNY 486
Query: 766 CSKHGLQLDTSSSGQFHQS-LEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD 824
G++ S + H L++ EK+K D+ L + R M+ A Y
Sbjct: 487 LEAMGIR--AKFSHKIHPGMLQKLLEKVK-DHPLRSSVERLLVRSMKRAMYSA------- 536
Query: 825 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYW-----KHRRMLPK 875
+ GH+ LA YTHFTSP+RRYPDLVVHR L LE + K ++LPK
Sbjct: 537 VNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFSKVLPK 592
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 178/365 (48%), Gaps = 38/365 (10%)
Query: 504 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563
+ L SRKDLR+ FTID S+A D DDA+S+ +G +GVHIADVS++V P +ALD
Sbjct: 199 QALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDR 258
Query: 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 623
EA R S+Y + IPMLP LS+ + SL P VDRLA S+F + G + D I R+V
Sbjct: 259 EAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSV 318
Query: 624 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 683
IRS +++Y+ +II+ K + + ++I + E+S+I D
Sbjct: 319 IRSKYRMTYDEVDEIIEKK--------------------QTHPISKTILKMAELSRIFSD 358
Query: 684 KRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFP 743
R G RL D P + + + + L EEFML AN EVIA
Sbjct: 359 IREQRGCTRLVLPSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKAN----EVIAYHIS 414
Query: 744 DSAL---LRRHPAPNMRKLREFEAFCSKHGLQL-DTSSSGQFHQSLEQAREKLKDDYVLF 799
+ R H PN L F+ G + T + +Q L Q + + L
Sbjct: 415 HQGITMPFRTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQ---ETTAGHPLE 471
Query: 800 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859
IL + R M+ ASY + GHY L YTHFTSP+RRY DL+VHR L
Sbjct: 472 PILHSQFVRSMKTASY-------STENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHP 524
Query: 860 LEAEK 864
L E+
Sbjct: 525 LSVEE 529
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 176/365 (48%), Gaps = 38/365 (10%)
Query: 504 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563
+ L SRKDLR+ FTID ++A D DDA+S+ +G +GVHIADVS++V P +ALD
Sbjct: 199 QALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDQ 258
Query: 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 623
EA R S+Y + IPMLP LS+ + SL P VDRLA S+F + G + D I R+V
Sbjct: 259 EAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSV 318
Query: 624 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 683
IRS +++Y+ +II+ K S T+ E + E+S+I D
Sbjct: 319 IRSKYRMTYDEVDEIIEKKLAHPISKTILE--------------------MAELSRIFSD 358
Query: 684 KRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFP 743
R G RL D P V + + + L EEFML AN EVIA
Sbjct: 359 IREQRGCTRLVLPSFTMSLDNLQEPVALVENKQTAAHKLIEEFMLKAN----EVIAYHIS 414
Query: 744 DSAL---LRRHPAPNMRKLREFEAFCSKHGLQL-DTSSSGQFHQSLEQAREKLKDDYVLF 799
+ R H PN L F G + T + +Q L Q + + L
Sbjct: 415 HQGITMPFRIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQ---ETSAGHPLE 471
Query: 800 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859
IL + R M+ ASY + GHY L YTHFTSP+RRY DL+VHR L
Sbjct: 472 PILHSQFVRSMKTASY-------STENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHP 524
Query: 860 LEAEK 864
L E+
Sbjct: 525 LSVEE 529
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 212/423 (50%), Gaps = 27/423 (6%)
Query: 436 EMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP 495
E ++V+ +I ++ + + + + G GEV I +L I FS E+L+
Sbjct: 130 EEDVVSLKITQYPTNTKTFEGKITGIIGHKGEVGLDILEVLCAMKIPQE-FSSETLAEAE 188
Query: 496 CVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFV 555
++ +L R+D RN +TID + DLDDA+ +++LS+ +GVHIADVS++V
Sbjct: 189 AFSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYV 248
Query: 556 LPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVV 615
G++LD EA R+TSVY+ R +PMLPV LS + SLN +RL S +++ G +V
Sbjct: 249 TEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQERLTMSCLMEIDDKGKIV 308
Query: 616 DRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLY 675
I +VI++ +++Y + +I + EG + F + SIK
Sbjct: 309 SYKISPSVIKTTYRMTYNNVNKMI---------HQGQEGHREALENF--FKITDSIKVAV 357
Query: 676 EVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAA 735
E+ +IL+ R G + + S+ + DE G P + V R+ + E FML+AN+T A
Sbjct: 358 ELHEILETMRKDRGMIEFDESEAKIILDEKGHPIEIVKRDRDTAERMIESFMLMANETVA 417
Query: 736 -EVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKD 794
+ + P +L R H P + + + G L++ S HQ++ +++K
Sbjct: 418 LDFQKKKLP--SLYRVHDNPKEKSFAKLMEAAANAGFSLNSDS----HQAINFFADEIKG 471
Query: 795 DYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHR 854
+ + Y R + + + K H+ LA YTHFTSP+RRYPDL++HR
Sbjct: 472 --TSSEKALTYQLRHTMSTAVYSEKNTK------HFGLAATNYTHFTSPIRRYPDLIIHR 523
Query: 855 TLN 857
L+
Sbjct: 524 LLH 526
>sp|P21499|RNR_ECOLI Ribonuclease R OS=Escherichia coli (strain K12) GN=rnr PE=1 SV=2
Length = 813
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 185/368 (50%), Gaps = 31/368 (8%)
Query: 500 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 559
EVP+E R DLR+ + TID A D DDA+ E+ G R+ V IADVSY+V P T
Sbjct: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310
Query: 560 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 619
LD EA+ R TSVY + IPMLP +LS + SLNP VDRL ++S G +
Sbjct: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370
Query: 620 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 679
V+ S +L+Y I+ G D+ +++ +V+ ++ L+ + K
Sbjct: 371 YEAVMSSHARLTYTKVWHILQGDQDLRE---------------QYAPLVKHLEELHNLYK 415
Query: 680 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 739
+L R G + E+ + F+F+ + R D + L EE M+LAN +AA +
Sbjct: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475
Query: 740 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ---FHQSLEQAREKLKDDY 796
+A + AL R H P+ + F + ++ GL+L + + + + LE ++ D
Sbjct: 476 KA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR-PDAE 533
Query: 797 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 856
+L +L+ R M+ A Y D + GH+ LA Y HFTSP+RRYPDL +HR +
Sbjct: 534 MLQTMLL----RSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582
Query: 857 NAALEAEK 864
L E+
Sbjct: 583 KYLLAKEQ 590
>sp|P30851|RNR_SHIFL Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4
Length = 813
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 185/368 (50%), Gaps = 31/368 (8%)
Query: 500 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 559
EVP+E R DLR+ + TID A D DDA+ E+ G R+ V IADVSY+V P T
Sbjct: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPT 310
Query: 560 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 619
LD EA+ R TSVY + IPMLP +LS + SLNP VDRL ++S G +
Sbjct: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370
Query: 620 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 679
V+ S +L+Y I+ G D+ +++ +V+ ++ L+ + K
Sbjct: 371 YEAVMSSHARLTYTKVWHILQGDQDLRE---------------QYAPLVKHLEELHNLYK 415
Query: 680 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 739
+L R G + E+ + F+F+ + R D + L EE M+LAN +AA +
Sbjct: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475
Query: 740 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ---FHQSLEQAREKLKDDY 796
+A + AL R H P+ + F + ++ GL+L + + + + LE ++ D
Sbjct: 476 KA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR-PDAE 533
Query: 797 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 856
+L +L+ R M+ A Y D + GH+ LA Y HFTSP+RRYPDL +HR +
Sbjct: 534 MLQTMLL----RSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582
Query: 857 NAALEAEK 864
L E+
Sbjct: 583 KYLLAKEQ 590
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 188/421 (44%), Gaps = 33/421 (7%)
Query: 449 EESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLS 508
+E P +L G + AI E + F PE + + + L S
Sbjct: 148 QEGASPALQMLEFIGHITNAKADFQAIQAEYNLA-EEFPPEVIEEASLFSQKHITQVLHS 206
Query: 509 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 568
RKDLR+ FTID STA D DDA+S+ + +GVHIADVS++V P + LD EA R
Sbjct: 207 RKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADVSHYVTPHSHLDKEAAKR 266
Query: 569 STSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCC 628
S Y + IPMLP LS+ + SL P VDRLA S+F +G + D I R+VIRS
Sbjct: 267 CNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKSGHLSDYQIFRSVIRSKY 326
Query: 629 KLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTD 688
+++Y+ +II+ K S L E + +SK D R
Sbjct: 327 RMTYDEVDNIIEKKHSHPLSKILNE--------------------MATLSKKFSDIREER 366
Query: 689 GALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALL 748
G +R D P + + + + L EEFML AN+ A I+ S
Sbjct: 367 GCIRFVLPSVTMSLDNLQEPVALIENHQTFSHKLIEEFMLKANEVVAYHISHQ-GVSLPF 425
Query: 749 RRHPAPNMRKLREFEAFCSKHGLQLD-TSSSGQFHQSLEQAREKLKDDYVLFDILINYAT 807
R H PN L F+ G + T + +Q L Q + L +L +
Sbjct: 426 RSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSA---GHPLEQVLHSQFV 482
Query: 808 RPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYW 867
R M+ ASY + GHY L YTHFTSP+RRY DL+VHR L L ++ +
Sbjct: 483 RSMKTASY-------STENKGHYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHL 535
Query: 868 K 868
+
Sbjct: 536 E 536
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 203/411 (49%), Gaps = 35/411 (8%)
Query: 456 AHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNF 515
A ++H+ G +V + +I+Y+N I + F P+ + + + V + + R+ + +
Sbjct: 197 AELVHIIGHKNDVGSDVLSIVYDNGIDPT-FDPQVVDLASKLEFYVDEHQNKIRRSIIDR 255
Query: 516 CIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYML 575
I +IDP + D+DDA+ +++L+D +G+ IADVS++V P T LD +A R TS Y++
Sbjct: 256 EIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTSTYLV 315
Query: 576 QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHA 635
R IPMLP +S + SLN G R+ + ++ G + + + ++++ ++SY+
Sbjct: 316 DRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSYDEV 375
Query: 636 QDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLEN 695
D +GK ES+ TL L + E+ IL++K+ DG + +
Sbjct: 376 NDFYEGKSRFESA-TLTMKEMLLEAK--------------ELHHILRNKKIKDGYVDFDI 420
Query: 696 SKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSAL-------- 747
+P + DE G P D + R+ + E+FM+ AN+ A + A D L
Sbjct: 421 KEPKIILDETGVPIDIKIYERKTAQMMVEDFMIAANE-AVTMFAEEHMDKTLKEFNLEMP 479
Query: 748 --LRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINY 805
R H P++ L++FE K + ++ K+ D++V ++
Sbjct: 480 FIYRVHDKPSIINLQKFEIEAKKLSFNISHDFENIQPNTISNWL-KMNDNHVNLPLISKL 538
Query: 806 ATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 856
R M ASY + + GH+ LA YTHFTSP+RRYPDL+VHR L
Sbjct: 539 LLRSMAKASY-------EIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLL 582
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 182/366 (49%), Gaps = 27/366 (7%)
Query: 500 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 559
EVP+E + R DLR + TID A D DDA+ E+ DG R+ V IADVSY+V P +
Sbjct: 258 EVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWVAIADVSYYVRPDS 317
Query: 560 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 619
ALD EA R SVY + +PMLP +LS + SLNP VDRL ++ +G +
Sbjct: 318 ALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISESGKLSSYKH 377
Query: 620 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 679
V+ S +L+Y I++G ++ + +V ++ L+ + K
Sbjct: 378 YEAVMNSHARLTYSKVSAILEGDEELRE---------------RYQPLVSHLEELHAMYK 422
Query: 680 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 739
+LK+ R GA+ E + F+F+ R D + + EE M+LAN +A ++
Sbjct: 423 VLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLVE 482
Query: 740 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL-KDDYVL 798
+A + AL R H +P +L+ F F S+ GL+L + AR+ + D L
Sbjct: 483 KA-KEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQEL 541
Query: 799 FDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNA 858
++ R M+ A Y + + GH+ LA Y HFTSP+RRYPDL++HR +
Sbjct: 542 IQTML---LRSMKQAVY-------NADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKY 591
Query: 859 ALEAEK 864
+ E+
Sbjct: 592 LIAKEE 597
>sp|P44907|RNR_HAEIN Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnr PE=3 SV=1
Length = 782
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 178/368 (48%), Gaps = 32/368 (8%)
Query: 500 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 559
EV +E R DLRN + TID A D DDA+ E+ G ++ V IADVSY+V +
Sbjct: 259 EVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKGW-KLWVAIADVSYYVRLRS 317
Query: 560 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 619
LD+EA R SVY R +PMLP +LS + SLNP VDRL +++ G + D
Sbjct: 318 TLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQISAKGKLTDYRF 377
Query: 620 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 679
V+ S +L+Y +++G ++ + +S +V ++ LY++ +
Sbjct: 378 YEAVMNSHARLTYTKVAKMLEGDEELRT---------------RYSTLVPHLEELYKLYQ 422
Query: 680 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 739
L R GA+ E + F+F+ G R D + EE M LAN AA +
Sbjct: 423 ALLSARHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFME 482
Query: 740 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDY 796
+ + AL R H P+ KL F F S+ GL L+ ++ + LE+ +E + D+
Sbjct: 483 K-HKEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKE--RPDH 539
Query: 797 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 856
L ++ R + A Y + GH+ LA Y HFTSP+RRYPDL +HR +
Sbjct: 540 ELIQTML---LRSLSQAVYHAD-------NIGHFGLALEEYAHFTSPIRRYPDLTLHRGI 589
Query: 857 NAALEAEK 864
L E+
Sbjct: 590 KYLLAKEQ 597
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 180/361 (49%), Gaps = 33/361 (9%)
Query: 509 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 568
R+DLR FTIDP A D DDA++IE +G ++ VHIADVSY+V GT D EA R
Sbjct: 240 RRDLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKR 299
Query: 569 STSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCC 628
+ Y R + MLP LS ++ SL P D+LAF++ + +G++ I +VIRS
Sbjct: 300 GFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKA 359
Query: 629 KLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTD 688
+L+Y A +I G L + +P L + +R +++LY +IL KR+
Sbjct: 360 RLTYNEALALIVG------DPALEKKFPNL------VEPLRMMETLY---RILSRKRWEM 404
Query: 689 GALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA-FPDSAL 747
G++ + + + DEYG P R + + E FM+ AN+T A + A +P L
Sbjct: 405 GSIDFDLPEAEVIVDEYGEPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYP--CL 462
Query: 748 LRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDYVLFDILIN 804
R H P+ K+ G ++ + F + +E + +++ V F L
Sbjct: 463 YRVHEPPDEEKVENLLEILEGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTL-- 520
Query: 805 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
R M A Y + GH+ LA Y HFTSP+RRYPD++VHR L AL E+
Sbjct: 521 ---RAMARAKY-------SPHNVGHFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEE 570
Query: 865 L 865
+
Sbjct: 571 I 571
>sp|Q9KNY1|RNR_VIBCH Ribonuclease R OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnr PE=3 SV=1
Length = 821
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 175/360 (48%), Gaps = 31/360 (8%)
Query: 500 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGT 559
EVP+E R DLR + TID A D DDA+ E G R+ V IADVSY+V P T
Sbjct: 258 EVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDT 317
Query: 560 ALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWI 619
ALD EA R SVY + +PMLP +LS + SLNP VDRL ++ G +
Sbjct: 318 ALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKH 377
Query: 620 GRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSK 679
V+ S +L+Y +I++G ++ + +V ++ L+++ +
Sbjct: 378 YEAVMNSHARLTYTKVHEILEGDEELRE---------------RYKALVPHLEELHKMYQ 422
Query: 680 ILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIA 739
+LK R GA+ E + F+F+ R D + L EE M+LAN +A ++
Sbjct: 423 VLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVE 482
Query: 740 RAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDY 796
+A ++AL R H P +L F F + GL L S + ++Q E+ +
Sbjct: 483 KA-KEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKEL 541
Query: 797 VLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTL 856
+ +L R M+ A Y + + GH+ LA Y HFTSP+RRYPDL++HR +
Sbjct: 542 IQTMLL-----RSMKQAVY-------NADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAI 589
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 199/413 (48%), Gaps = 45/413 (10%)
Query: 471 QINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDD 530
QI+ +L E + F + L + V +++ +RKDLR+ I TID D DD
Sbjct: 199 QIDIVL-EKSKTIIDFPEDVLDESALIEDHVIEKDYQNRKDLRDKLIITIDGEDTKDFDD 257
Query: 531 ALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEV 590
A+ +E+ D + VHIADV+++V +A+D EA R+TS+Y+ IPMLP LS +
Sbjct: 258 AIYVEKNKDHF-LLSVHIADVAHYVKENSAIDKEALRRATSIYLPHMVIPMLPEKLSNGI 316
Query: 591 GSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNT 650
SLNPGVDRL SI ++ G+ + + +I S +L+Y D + K ++
Sbjct: 317 CSLNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSKHRLTYNQVNDFYNNKIKLD---- 372
Query: 651 LGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYD 710
P L S E+SKIL++ + +G + LE + + D+ G
Sbjct: 373 -----PNLEKMLNDS---------LELSKILENYKKDEGYINLEIEESKVILDKEGKTVG 418
Query: 711 SVLSGREDLNFLFEEFMLLANKTAA-EVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH 769
+ R L E FM+ AN+ A ++ P ++ R H P++ L FE
Sbjct: 419 IKVIQRGLSEVLIENFMVRANEAVAWKMNKLKLP--SIYRVHDNPSIESLVLFEKTLKTL 476
Query: 770 GLQLDT---SSSGQFHQSLEQAREKLK-DDYVLFDILINYATRPMQLASYFCSGDFKDDT 825
G+ DT +S F S E+ ++ + D++V +L R M+ A Y D
Sbjct: 477 GIDFDTPKITSPKAFSDSFEKIKQNYQIDNFVKLMVL-----RTMEKAIY-------SDK 524
Query: 826 DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNH 878
+ GH+ LA Y+HFTSP+RRYPDL +HR + +++ + + K NH
Sbjct: 525 NIGHFGLASSYYSHFTSPIRRYPDLQLHRLI------KQMVFDKSNLKEKKNH 571
>sp|P24276|SSD1_YEAST Protein SSD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSD1 PE=1 SV=1
Length = 1250
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 189/740 (25%), Positives = 303/740 (40%), Gaps = 95/740 (12%)
Query: 155 ARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEG-VQTDVLITGIAAQN 213
R +FAP+ + E +++G + RVN NR +A+ +G + D+ I G +N
Sbjct: 336 GRKSLFAPYLPQANIPELIQEGRLVAGILRVNKKNRSDAWVSTDGALDADIYICGSKDRN 395
Query: 214 RAVEGDFV---LIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVS 270
RA+EGD V L+ VD +W K + S M D+ S D
Sbjct: 396 RALEGDLVAVELLVVD--DVWESKKEKEEKKRRKDAS--------MQHDLIPLNSSDDYH 445
Query: 271 YEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTE---------K 321
+ S S + S S + + + R+ + IN S S T+ K
Sbjct: 446 NDASVTAATSNNFLSSPSSSDSLSKDDLSVRRKRSSTINNDSDSLSSPTKSGVRRRSSLK 505
Query: 322 VSSSQQNDGMNAIERLSAMISSYP----TKRP--TGRVVSIIERSPRR--DGIVGFLNVN 373
+Q+ + +E S ++ +P G VV++++R P + G +G L +
Sbjct: 506 QRPTQKKNDDVEVEGQSLLLVEEEEINDKYKPLYAGHVVAVLDRIPGQLFSGTLGLLRPS 565
Query: 374 QWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDA 433
Q N + K PT K P + + + P K +E D
Sbjct: 566 QQANSDNNKPPQSPK-----------IAWFKPTDKKVPLIAIPTELAP---KDFVENADK 611
Query: 434 TIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGF----SPE 489
E +L A I W S P ++ G + + +I++IL +N + + +P+
Sbjct: 612 YSE-KLFVASIKRWPITSLHPFGILVSELGDIHDPDTEIDSILRDNNFLSNEYLDQKNPQ 670
Query: 490 ----SLSCLPCVPWEVPQEELLSRK---DLRNFCIFTIDPSTATDLDDALSIERLSDGIS 542
S LP E L R+ D + IF I + AL + +G
Sbjct: 671 KEKPSFQPLPLT-----AESLEYRRNFTDTNEYNIFAISELGWVS-EFALHVRNNGNGTL 724
Query: 543 RVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAF 602
+G H+ DV+ + G+++D A+ RS++V+M Q+ + +LP ++E+ SL PG +
Sbjct: 725 ELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDEL-SLAPGKESATL 783
Query: 603 SIFWDLNSAG-DVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQ 661
S+ + L+S+ + W+G + I LS E +D K L G P Y
Sbjct: 784 SVVYTLDSSTLRIKSTWVGESTISPSNILSLEQ----LDEK--------LSTGSPTSY-- 829
Query: 662 FEWSDVVRSIKSLYEVSKILKDKRFTDG-ALRLENSKPVFLFDEYGTPYDSVLSGREDLN 720
+ ++ E+++ +R D A L + D+ D + R
Sbjct: 830 ---------LSTVQEIARSFYARRINDPEATLLPTLSLLESLDDEKVKVDLNILDRTLGF 880
Query: 721 FLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQ 780
+ E N T AE I D ALLRR P K+ F G DT+++ +
Sbjct: 881 VVINEIKRKVNSTVAEKIYTKLGDLALLRRQMQPIATKMASFRKKIQNFGYNFDTNTADE 940
Query: 781 FHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHF 840
L + K+KDD V I I + M A YF +G D +GHYAL P+YTHF
Sbjct: 941 ----LIKGVLKIKDDDVRVGIEI-LLFKTMPRARYFIAGKVDPD-QYGHYALNLPIYTHF 994
Query: 841 TSPLRRYPDLVVHRTLNAAL 860
T+P+RRY D VVHR L A +
Sbjct: 995 TAPMRRYADHVVHRQLKAVI 1014
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 203/433 (46%), Gaps = 38/433 (8%)
Query: 439 LVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVP 498
+V ++ E + Q ++ V G+ I L + I +S E L +
Sbjct: 193 IVVVKLRENATKKSKIQGTIVEVLGKEMGTNLAIKIALRTHCIPYL-WSKEVEYQLCGIK 251
Query: 499 WEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGIS--RVGVHIADVSYFVL 556
++ +++ +R DLR+ FTID A D DDA+ ++ ++G ++ V I+DVSY++
Sbjct: 252 SKINEKDFKNRIDLRHLPFFTIDEEDARDFDDAIFCKKKTNGEKGWKLWVAISDVSYYIQ 311
Query: 557 PGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD 616
P TALD A R TS+Y IPMLP +S +V SLNP +RL+ +L++ G+++
Sbjct: 312 PDTALDKAASKRGTSIYFPSLVIPMLPEKISIDVCSLNPNAERLSLICEMNLSNKGELI- 370
Query: 617 RWIGRTVIRSCCKLSYEHAQDII--DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSL 674
+Y+H + +I G+F + G +L F++ +++ I++L
Sbjct: 371 --------------TYKHYEAVICSHGRFTYNEIFKIWNGDIEL--CFKYKKLLKYIQNL 414
Query: 675 YEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTA 734
+ KILK + + EN + F+ D + + R D + E M+LAN +
Sbjct: 415 SSLQKILKKYNVSKRGIYFENIEAKFILDSNYRIKNISQNIRNDAHKFIESCMILANIAS 474
Query: 735 AEVIARAFPDSALLRRHPAPNMRKLREFEAF---CSKHGLQLDTSSSGQFHQSLEQAREK 791
AE + + L R H P+ + F + L + S + + L++
Sbjct: 475 AEFVKKH-KSPVLFRNHDRPDKDSIINFRSVLKKLGLSLLGGEIPESTDYSELLKKIST- 532
Query: 792 LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 851
+ DY + ++ R M+ A Y S D + GH+ L+ Y HFTSP+RRYPDL+
Sbjct: 533 -RPDYEMIQTIL---LRSMKQAVY--SPD-----NRGHFGLSLSSYVHFTSPIRRYPDLL 581
Query: 852 VHRTLNAALEAEK 864
VHR + L EK
Sbjct: 582 VHRVIKNLLLKEK 594
>sp|P47350|RNR_MYCGE Ribonuclease R OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=rnr PE=3 SV=1
Length = 725
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/447 (26%), Positives = 206/447 (46%), Gaps = 53/447 (11%)
Query: 421 PDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENA 480
PDSI L +A +IDE++ ++ + V V G + I AI+ +N+
Sbjct: 183 PDSIPNNLASNTK------IAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNS 236
Query: 481 IC--CSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLS 538
I + + + L ++ ++ R+DL + T+DP+T+ DLDDA+ ++ +
Sbjct: 237 IVFETNDVVEQHANKLS---FDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIP 293
Query: 539 DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYML-QRKIPMLPVLLSEEVGSLNPGV 597
G + V IADV+++V + +DIEA+ +++S+Y+ +PMLP LS ++ SLNP
Sbjct: 294 TGFV-LYVAIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQ 352
Query: 598 DRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQ 657
R ++ G + + I S + SY+ ++ K ++ T
Sbjct: 353 KRYVVVCEISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDET------- 405
Query: 658 LYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGRE 717
V+ S+K+ + +S +++ +R G + L + + + DE+ P +
Sbjct: 406 ---------VINSLKAAFTLSDLIQAQRQKRGTIDLSHKETEIVVDEHYFPIKINFLVHD 456
Query: 718 DLNFLFEEFMLLANKTAAEVIAR---AFPDSALLRRHPAPNMRKLREF-----EAFCSKH 769
+ E M++AN+T A V+ A P R HP P+ +KL+ E +K
Sbjct: 457 KAETMIENLMVVANETVAWVLTNNKIALP----YRVHPRPSKKKLQSLIETVGELNITKP 512
Query: 770 GLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGH 829
LDT +S Q L + ++ Y +F IL+ R + A Y + H
Sbjct: 513 QFNLDTVTSSQIASWLNENKDN--PSYEIFVILL---LRTLGKAFYSVNP-------LMH 560
Query: 830 YALAFPVYTHFTSPLRRYPDLVVHRTL 856
+++ YTHFTSP+RRY DL +HR L
Sbjct: 561 FSIGSNHYTHFTSPIRRYIDLTIHRLL 587
>sp|P75529|RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=rnr PE=3 SV=1
Length = 726
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 195/428 (45%), Gaps = 46/428 (10%)
Query: 440 VAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPW 499
VA +IDE++ + + + + G E + AI+ +++I F +
Sbjct: 196 VAFQIDEYDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIV---FEDNDVVEQQAAKL 252
Query: 500 EVPQEELLS--RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLP 557
+ ++E RKDL TIDP+T+ DLDDA+ ++R G + V IADV+Y+V
Sbjct: 253 QFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKGFV-LYVAIADVAYYVQR 311
Query: 558 GTALDIEAQVRSTSVYML-QRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD 616
+ LDIEA+ +++S+Y+ +PMLP LS E+ SLNP R + + +
Sbjct: 312 NSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNF 371
Query: 617 RWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 676
+ I S + +Y D + E S+ L + E + V+ S+K+ +
Sbjct: 372 SEVYPATIVSQRRFAYSEVNDWL------EDSDALKD---------ESATVLESLKAGFT 416
Query: 677 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAE 736
+S+++ ++R G + L +S+ + D+ P + + E M++AN+ A
Sbjct: 417 LSELIAEQRKKKGTIDLSHSETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAW 476
Query: 737 VIARA---FPDSALLRRHPAPNMRKLREF-----EAFCSKHGLQLDTSSSGQFHQSLEQA 788
+ P R HP P+ +KL+ E ++ LDT +S Q L++
Sbjct: 477 TLTNHKVHLP----YRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKEN 532
Query: 789 REKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYP 848
+ D +DI + R + A Y + H+++ YTHFTSP+RRY
Sbjct: 533 K-----DNPSYDIFVILLLRTLGKAFYIVNP-------LIHFSIGSHHYTHFTSPIRRYA 580
Query: 849 DLVVHRTL 856
DL VHR L
Sbjct: 581 DLTVHRLL 588
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 174/373 (46%), Gaps = 39/373 (10%)
Query: 500 EVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISR--VGVHIADVSYFVLP 557
++ Q + +R DLR+F FTID A D DDA+ +R ++ + V IADVS +V P
Sbjct: 251 KINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVAIADVSCYVQP 310
Query: 558 GTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 617
T LD A R TSVY IPMLP +S ++ SL P V+RL L+ G+++
Sbjct: 311 NTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMSLSKQGELI-- 368
Query: 618 WIGRTVIRSCCKLSYEHAQDII--DGKFDVESSNTLGEGW-PQLYGQFEWSDVVRSIKSL 674
SY+H + II G+F + N + + W ++ + ++ ++ I++L
Sbjct: 369 -------------SYKHYEGIICSHGRF---TYNEIFKIWNGDIFLRSKYKKFLKDIENL 412
Query: 675 YEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTA 734
+ I + + EN +P F+ D + R D + E M+LAN +
Sbjct: 413 SCLQNIFNKDNISKKGIYFENIEPKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVAS 472
Query: 735 AEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQL---DTSSSGQFHQSLEQAREK 791
A + + + L R H P + F ++ G L D+ S + L+ ++
Sbjct: 473 ARFVEK-YKYPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDR 531
Query: 792 LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 851
+ ++++ R M A Y S D + GH+ L+ Y HFTSP+RRYPDL+
Sbjct: 532 PE-----YEMIQTVLLRSMTQAVY--SPD-----NRGHFGLSLSSYVHFTSPIRRYPDLI 579
Query: 852 VHRTLNAALEAEK 864
+HR + L +K
Sbjct: 580 LHRVIKYLLFKDK 592
>sp|O94525|YBU1_SCHPO Uncharacterized ribonuclease C609.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC609.01 PE=3 SV=1
Length = 1157
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 125/476 (26%), Positives = 202/476 (42%), Gaps = 62/476 (13%)
Query: 412 KMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQ 471
K + L+ D + + + ++ A I W S P + G G+ + +
Sbjct: 508 KRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIGDPKVE 567
Query: 472 INAILYENAICCSGFSPESLS-CLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDD 530
AIL++ + F PESLS C+ +P +P EEL R +LR+ F I D
Sbjct: 568 YKAILHDFSCHTYDF-PESLSHCVKRLPTPIPAEELQKRYNLRDKLTFMIG-----TRDY 621
Query: 531 ALSIERLS-DGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEE 589
AL I+ S DG+ +G+H+ADV+Y+V LD EA R + V +LQ +P LP +SEE
Sbjct: 622 ALHIDTGSIDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFLPKKVSEE 681
Query: 590 VGSLNPGVDRLAFSIFWDLN-SAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESS 648
+ SL G D L SI L+ +G V+ +G +VI +S E AQ
Sbjct: 682 I-SLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQ------------ 728
Query: 649 NTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTP 708
+ ++ ++ + + V L+ K TD L L++ ++ F+
Sbjct: 729 -----------ANLQTNEALQLVDASAHVLTKLRLK--TDKKLDLQS---LYCFEF---- 768
Query: 709 YDSVLSGREDLNF-LFEEFMLL---------ANKTAAEVIARAFPDSALLRRHPAPNMRK 758
D + +++N +FE F + N+ A + FP +LR++ P+
Sbjct: 769 CDGQIPNIQNINMSIFEAFPIACSLQQIEHWVNEKVASHLMSVFPSKVILRKNQRPS--D 826
Query: 759 LREFEAFCSKHGLQLDTSSS-GQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFC 817
A G+ L SS+ + + ++K +L+ R M S +
Sbjct: 827 FASLVAVSELTGVNLSASSTPSEIMTEIATTKDKRT------KMLLQLTLRRMCNESEYT 880
Query: 818 SGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRML 873
G + D H+ + P YTHF P RRY D+ V R L A + + K R L
Sbjct: 881 IGT-SNAKDVSHFVFSCPYYTHFCHPTRRYIDICVQRQLREAFDGRPDFSKDYRSL 935
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
+F P+ ++ + + G +N NR +AY + + + I G +NR +EG
Sbjct: 291 LFLPYLPQASLPKFIGTGKLLVGTLHINRKNRSDAYVITDVLDEPIFICGSKDRNRTLEG 350
Query: 219 DFVLIKV 225
D V +++
Sbjct: 351 DLVAVEL 357
>sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus ferrooxidans GN=rnr PE=3
SV=2
Length = 439
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 430 EGDATIEMELVAARIDEWNEESPFPQAHVLHVFGR----GGEVEPQINAILYENAICCSG 485
EG + ++V I ++ + PQ HV+ + G G EVE I N
Sbjct: 193 EGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVE-----IAVRNYGLPHQ 247
Query: 486 FSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVG 545
+ E L+ + VP+ R+DLR+ + TID + A D DDA+ E + +G R+
Sbjct: 248 WPDEVLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEVIENGF-RLT 306
Query: 546 VHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIF 605
V IADV+ +V P +ALD EA R SVY +R IPMLP +LS + SLNP VDRL
Sbjct: 307 VAIADVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMFCE 366
Query: 606 WDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNT 650
++++AG R +I S + +Y+ I+ G ++ + +
Sbjct: 367 MEMDAAGRSTGFRFDRGIIGSQRRFTYDEVAAILAGDAELRAQDA 411
>sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sts5 PE=1 SV=1
Length = 1066
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 131/560 (23%), Positives = 217/560 (38%), Gaps = 82/560 (14%)
Query: 351 GRVVSIIERSPRR--DGIVGFLNVNQWFN--YKGGSRKDAKKNRSSLSVPDREYIQLTPT 406
G VV++++R+P + G +G L + N + S N S P + + P+
Sbjct: 430 GHVVAVLQRAPGQVFSGTLGILRPSSAANKERQTSSGNQGSSNNSGNDKP--KIVWFKPS 487
Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 466
+ P + + + P D L A I W S P ++ G
Sbjct: 488 DKRVPLIAIPTEQAPTDFLG----NDQAYAQRLFLASIKRWPVTSLHPFGMLVGELGSMD 543
Query: 467 EVEPQINAILYENAI---------------CCSGFSPESLSCLPCVPWEVPQEELLSRKD 511
+ Q++A+L++ + + S L+ C + L + D
Sbjct: 544 SMSAQVSALLHDTGVHSEPWEGSAATSAVTALNALSDNFLNVAGCADYRSEDVFLFVKND 603
Query: 512 LRNFCIF-------TIDPSTATD-LDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563
+ + I+ S+ATD + A I S G VG+H+ DVS + PG+ LD
Sbjct: 604 VSKAAVSEVKQHESNINSSSATDFVSSAFHIRPTSTGY-HVGIHVTDVSRVIEPGSPLDR 662
Query: 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTV 623
E Q RS +V + Q+ +P+ P L E + SL D S+ D++S G + WIG V
Sbjct: 663 ELQRRSIAVNLCQKSVPLFPTTLGEAL-SLREDKDCYTMSLLLDVSSTGKIRGTWIGWAV 721
Query: 624 IRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKD 683
IR + + A +++ Q + V S + + +
Sbjct: 722 IRPRKAYTMKEADELL-----------------QTDARLRLFHTVSSRLRTHHLGTDVPL 764
Query: 684 KRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFP 743
R+ R + F P ++ L + L E + AN+ A + + F
Sbjct: 765 SRYCRLVRRWDEESCSF------DPNETNLFISSAVEVLRETLLDAANRAVASHLRQEFR 818
Query: 744 DSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILI 803
++A LR P+ R ++ + G LD SS+ +SL ++ ++DD V + +
Sbjct: 819 ENAFLRTQRLPSRENCRILQSMAIQMGCVLDLSST----KSLLRSLSLIEDDTVRNILQL 874
Query: 804 NY------ATRPMQ-----LASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVV 852
Y A MQ LAS S +D++D THFT+PL RY D+VV
Sbjct: 875 YYYKVTPRAVYEMQKYKGNLASQMMSLGIEDESD---------DLTHFTAPLERYGDIVV 925
Query: 853 HRTLNAALEAEKLYWKHRRM 872
H L L E K R+
Sbjct: 926 HYQLQLLLRGELASEKRLRV 945
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 156 RCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRA 215
R +F+P+ ++ L + + V+ NR +A+ ++G+ +V I G +NRA
Sbjct: 283 RKNLFSPYLPQSSIPALLAERRLVTGILIVSKKNRSDAFVSVDGLDAEVFICGSKDRNRA 342
Query: 216 VEGDFVLIK-VDRLSLWA 232
+EGD V I+ +D +WA
Sbjct: 343 LEGDVVAIELLDVDEVWA 360
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 167/386 (43%), Gaps = 62/386 (16%)
Query: 509 RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVR 568
R+D R F FT+DP A +LDDALS+ L V VHI DV+ FV LD+EA+ +
Sbjct: 1334 REDCRAFLTFTVDPQGACNLDDALSVRDLGPRCE-VAVHITDVASFVPRDGVLDVEARRQ 1392
Query: 569 STSVYMLQRK-IPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSA-GDVVDRWIGRTVIRS 626
+ Y R+ +PMLP L ++V SL PG DRLA S+F + A G + +V++S
Sbjct: 1393 GAAFYAPGREPVPMLPASLCQDVLSLLPGRDRLAISLFLTMEKASGQLKSLRFAPSVVQS 1452
Query: 627 CCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRF 686
+LSYE A+++I G G +L + + D + + Y F
Sbjct: 1453 DRQLSYEEAEEVI--------RQHPGAGR-ELPARLDSVDAC-VVAACY----------F 1492
Query: 687 TDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSA 746
+ R F Y P + G + + +E+M+ N+ AE + +
Sbjct: 1493 SRLLRRHRLRSDCF----YEQPDEDGTLGFRAAHIMVKEYMIQFNRLVAEFLVGSECTRT 1548
Query: 747 L--LRRHPAPNMRKLREFEAFCSKHG------------------------LQLDTSSSGQ 780
+ LR PAP ++L+ A C KHG L L S Q
Sbjct: 1549 VTPLRWQPAPRSQQLK---ALCEKHGDRVPLSLHLGHHLHGGGGSPPDTRLHLLASLWKQ 1605
Query: 781 FH-QSLEQAREKLKDDYVLFDI--LINYATRPMQLA---SYFCSGDFKDDTDWGHYALAF 834
+ Q E++ D D+ + A R ++ A S F GHY+L
Sbjct: 1606 VQFAARTQDYEQMVDLVTTDDMHPFLAPAGRDLRKALERSAFGRCARGHQQQGGHYSLQV 1665
Query: 835 PVYTHFTSPLRRYPDLVVHRTLNAAL 860
YT TSP+RRY D+V+ R + AL
Sbjct: 1666 DWYTWATSPIRRYLDVVLQRQILLAL 1691
>sp|Q8K9Q5|RNB_BUCAP Exoribonuclease 2 OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnb PE=3 SV=1
Length = 646
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 185/434 (42%), Gaps = 52/434 (11%)
Query: 454 PQAHVLHVFGRGG-EVEPQINAILYENAICCSGFSPESLSCL-PCVPW------------ 499
P+ +HVF G V I L N I + E + P +PW
Sbjct: 114 PKKSCVHVFQTGDWAVAKLIQHKLNGNHIFYAELIEEIVKANNPLIPWWVTLSRHNLERK 173
Query: 500 --EVPQEELL-----SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVS 552
++ +++L+ R+DL + TID D+DDAL IE + +G R+ V IAD +
Sbjct: 174 EPKIEKDDLILKNNSHREDLTHLNFITIDNFNTKDIDDALFIEEIHNGNLRLIVAIADPT 233
Query: 553 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAG 612
++ G+ LDI A R + Y+ +PMLP LSE++ SLNP R + + G
Sbjct: 234 SYIKSGSKLDITAAKRGFTNYLPGFNVPMLPRSLSEDICSLNPHERRPVLACCITILKDG 293
Query: 613 DVVDRW-IGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSI 671
++ + I+S KLSY++ D I+ K W E + I
Sbjct: 294 NICSKINFFLAWIKSKSKLSYDNVSDWIEKK----------SSWKP-----ETKSIENQI 338
Query: 672 KSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLAN 731
L+ + + R ++ L ++ + F F E G D V+ R + + EE M++AN
Sbjct: 339 LLLHRLCLLRIKWRTSNAVLFQDSLEYRFQFSETGIVEDVVIEKRRIAHKIIEESMIIAN 398
Query: 732 KTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTS--SSGQFHQSLEQAR 789
+AA +++ + H + +F + + L+ ++ + +L +
Sbjct: 399 ISAANFLSKNL-GFGIYNTHAGFDPINAENVVSFLNNYNLKFTVKEITTLKGFCNLRRVL 457
Query: 790 EKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPD 849
L D+Y IN R Q GDF T H+AL Y +TSP+R+Y D
Sbjct: 458 NILSDNY------INSRIRRYQ-----SFGDF-SITPSPHFALGLVEYATWTSPIRKYSD 505
Query: 850 LVVHRTLNAALEAE 863
++ HR L + + +
Sbjct: 506 MINHRLLKSIINQD 519
>sp|B8D7G3|RNB_BUCAT Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain Tuc7) GN=rnb PE=3 SV=1
Length = 649
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 508 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 567
+RKDL + TID + D+DDAL + ++G + V IAD + ++ G+ LD+ A
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 568 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR------WIGR 621
R + Y+ IPMLP LSE++ SLNP R + + G++ ++ W
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAW--- 305
Query: 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 681
I+S KLSY+H D I+ +G P + I L+ + +
Sbjct: 306 --IKSKSKLSYDHVSDWIE---------KIGSWIPPT------KSIANQILILHRLCLLR 348
Query: 682 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 741
R + L ++ + F E+G D ++ R + + EE M++AN +AA +++
Sbjct: 349 IKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKN 408
Query: 742 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ--SLEQAREKLKDDYVLF 799
+ H ++ +F + L +L + + ++Y+
Sbjct: 409 I-GFGIYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYI-- 465
Query: 800 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859
+R + S+ GDF H+AL F Y +TSP+R+Y D++ HR L +
Sbjct: 466 ------DSRIRRFQSF---GDF-STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSI 515
Query: 860 LEAEK 864
++ EK
Sbjct: 516 IKKEK 520
>sp|B8D959|RNB_BUCA5 Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain 5A) GN=rnb PE=3 SV=1
Length = 649
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 508 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 567
+RKDL + TID + D+DDAL + ++G + V IAD + ++ G+ LD+ A
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 568 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR------WIGR 621
R + Y+ IPMLP LSE++ SLNP R + + G++ ++ W
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAW--- 305
Query: 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 681
I+S KLSY+H D I+ +G P + I L+ + +
Sbjct: 306 --IKSKSKLSYDHVSDWIE---------KIGSWIPPT------KSIANQILILHRLCLLR 348
Query: 682 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 741
R + L ++ + F E+G D ++ R + + EE M++AN +AA +++
Sbjct: 349 IKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKN 408
Query: 742 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ--SLEQAREKLKDDYVLF 799
+ H ++ +F + L +L + + ++Y+
Sbjct: 409 I-GFGIYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYI-- 465
Query: 800 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859
+R + S+ GDF H+AL F Y +TSP+R+Y D++ HR L +
Sbjct: 466 ------DSRIRRFQSF---GDF-STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSI 515
Query: 860 LEAEK 864
++ EK
Sbjct: 516 IKKEK 520
>sp|P57354|RNB_BUCAI Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnb PE=3 SV=1
Length = 649
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 508 SRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQV 567
+RKDL + TID + D+DDAL + ++G + V IAD + ++ G+ LD+ A
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 568 RSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR------WIGR 621
R + Y+ IPMLP LSE++ SLNP R + + G++ ++ W
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAW--- 305
Query: 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 681
I+S KLSY+H D I+ +G P + I L+ + +
Sbjct: 306 --IKSKSKLSYDHVSDWIE---------KIGSWIPPT------KSIANQILILHRLCLLR 348
Query: 682 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARA 741
R + L ++ + F E+G D ++ R + + EE M++AN +AA +++
Sbjct: 349 IKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKN 408
Query: 742 FPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQ--SLEQAREKLKDDYVLF 799
+ H ++ +F + L +L + + ++Y+
Sbjct: 409 I-GFGIYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTLKGFCNLRRVLNIISNNYI-- 465
Query: 800 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859
+R + S+ GDF H+AL F Y +TSP+R+Y D++ HR L +
Sbjct: 466 ------DSRIRRFQSF---GDF-STIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSI 515
Query: 860 LEAEK 864
++ EK
Sbjct: 516 IKKEK 520
>sp|B4T6U4|RNB_SALNS Exoribonuclease 2 OS=Salmonella newport (strain SL254) GN=rnb PE=3
SV=1
Length = 644
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 158/364 (43%), Gaps = 29/364 (7%)
Query: 504 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563
+E L R+DL TID ++ D+DDAL E L+DG ++ V IAD + ++ G+ LD
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRW-IGRT 622
A++R+ + Y+ IPMLP LS+++ SL R A + + + G + D
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 623 VIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILK 682
I S KL+Y++ D + E++ T W Q E D+ + I+ L+ +
Sbjct: 304 TIESKAKLAYDNVSDWL------ENNGT----W-----QPENEDIAQQIRLLHRICLSRS 348
Query: 683 DKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAF 742
+ R + + F+ E G D V R N + EE M+ AN AA V+ R
Sbjct: 349 EWRHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANLCAARVL-RDK 407
Query: 743 PDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 802
+ H + A HGL +D + RE D
Sbjct: 408 LGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFLD-- 465
Query: 803 INYATRPMQLASYFCSGDFKDDTDWG-HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 861
+R + S+ + T+ G H+ L Y +TSP+R+Y D++ HR L A ++
Sbjct: 466 ----SRIRRFQSF-----AEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIK 516
Query: 862 AEKL 865
E +
Sbjct: 517 GEAI 520
>sp|Q6D5S7|RNB_ERWCT Exoribonuclease 2 OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=rnb PE=3 SV=1
Length = 644
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 159/388 (40%), Gaps = 45/388 (11%)
Query: 495 PCVPWEV-----------PQEEL-------LSRKDLRNFCIFTIDPSTATDLDDALSIER 536
P VPW V P+ E L R+DL TID ++ D+DDAL ++
Sbjct: 157 PLVPWWVTLSRHNLERSAPEVETTERHDGELVREDLTALNFVTIDSASTEDMDDALYVQD 216
Query: 537 LSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 596
DG ++ + IAD + +V G+ LD A+ R+ + Y+ IPMLP LS+++ SL P
Sbjct: 217 NGDGSLQLTIAIADPTAYVDAGSELDNIARQRAFTNYLPGFNIPMLPRALSDDICSLRPN 276
Query: 597 VDRLAFSIFWDLNSAGDVVDRW-IGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGW 655
R + + + G + D I S KL+Y++ D ++ + GE
Sbjct: 277 ERRPVLACRVTIAADGALGDDIHFFAASIESKAKLAYDNVSDWLENQ---------GEWQ 327
Query: 656 PQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSG 715
PQ ++ I+ L+ + + R T + + FL E G D V+
Sbjct: 328 PQN------EEIAEQIRLLHRLCLARSEWRTTHALVFKDRPDYRFLLGEKGEVLDIVVEH 381
Query: 716 REDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDT 775
R N + EE M+ AN AA ++ R + H + + + A HG+Q D
Sbjct: 382 RRIANRIVEESMIAANVCAA-IVLRDKLGFGIYNVHNGFDPASIEQAVAVLDTHGVQADA 440
Query: 776 SSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFP 835
+ RE D I ++++ T H+ L
Sbjct: 441 QTLLTLDGFCTLRRELDAQPTQFLDSRIRRFQSFAEVST----------TPGPHFGLGLE 490
Query: 836 VYTHFTSPLRRYPDLVVHRTLNAALEAE 863
Y +TSP+R+Y D+V HR L A + +
Sbjct: 491 AYATWTSPIRKYGDMVNHRLLKAVITGQ 518
>sp|A1SWZ6|RNB_PSYIN Exoribonuclease 2 OS=Psychromonas ingrahamii (strain 37) GN=rnb
PE=3 SV=1
Length = 656
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 170/379 (44%), Gaps = 50/379 (13%)
Query: 498 PWEV--PQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFV 555
PW++ PQ LSR DL FTID D+DDAL IE +G ++ V I+D S +V
Sbjct: 180 PWKIIDPQ---LSRSDLTKTPFFTIDGVNTQDMDDALYIEADENGW-KLTVAISDPSAYV 235
Query: 556 LPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDV- 614
+ +D EA+ R+ ++Y+ +PMLP LS+ + SL G R +N G++
Sbjct: 236 PENSDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIE 295
Query: 615 -----VDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVR 669
W I+S +L+Y + ++ + E SN + QL Q D +
Sbjct: 296 GEPAFYGAW-----IKSHYRLNYTDVSNYLENE---ELSNDCWKPSTQLAEQLRTLDSL- 346
Query: 670 SIKSLY---EVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEF 726
S+K L + + + K++ D L+L N G + + R N L EE
Sbjct: 347 SLKRLQWRTDNNAVFKNQ--PDYTLKLNNK---------GEISEILCEPRRSANRLVEES 395
Query: 727 MLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLD--TSSSGQFHQS 784
M+ AN A + +A+ + H + +L + + S+ G++ D T ++ +
Sbjct: 396 MIAANICAGDFLAK-HKQQGVFNTHSGFSSERLGKVVSLLSEFGIESDIQTLATVTGYTK 454
Query: 785 LEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPL 844
+ Q L + Y+ R +L SY D K +T H+ L Y +TSP+
Sbjct: 455 IRQQTNLLHNSYL--------DHRLRKLLSY---ADIK-NTPEAHFTLGVDHYATWTSPI 502
Query: 845 RRYPDLVVHRTLNAALEAE 863
R+Y DL+ HR + + L E
Sbjct: 503 RKYGDLLNHRLIKSVLLKE 521
>sp|A4WAX5|RNB_ENT38 Exoribonuclease 2 OS=Enterobacter sp. (strain 638) GN=rnb PE=3 SV=1
Length = 644
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 157/382 (41%), Gaps = 65/382 (17%)
Query: 504 EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563
+E L R+DL TID ++ D+DDAL +E +DG + V IAD + ++ G+ LD
Sbjct: 184 DEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVAIADPTAWIAEGSKLDD 243
Query: 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD--RWIGR 621
A+VR+ + Y+ IPMLP LS+++ SL P R + + + G + D +
Sbjct: 244 SAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMTIAADGTIEDDIEFFAA 303
Query: 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIL 681
T I S KL+Y+ + ++G G P E + + I L V
Sbjct: 304 T-IESKAKLAYDDVSNWLEGA---------GNWKP------ESEAIAQQITLLQRVCLSR 347
Query: 682 KDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVI--- 738
+ R T + + F+ E G D V R N + EE M+ AN AA V+
Sbjct: 348 GEWRKTHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDK 407
Query: 739 --------------ARAFPDSALLRRHPA-PNMRKLREFEAFCSKHGLQLDTSSSGQFHQ 783
A +ALL+ H + +++ E FC K +LD SG
Sbjct: 408 LGFGIYNVHTGFDPANTEALAALLKTHDVHVDPQEVLTLEGFC-KLRRELDAQPSGFLDS 466
Query: 784 SLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSP 843
+ + F +T P H+ L Y +TSP
Sbjct: 467 RIRR-----------FQSYAEISTEPGP-----------------HFGLGLEAYATWTSP 498
Query: 844 LRRYPDLVVHRTLNAALEAEKL 865
+R+Y D+V HR L A ++ E +
Sbjct: 499 IRKYGDMVNHRLLKAIVKGETI 520
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,980,093
Number of Sequences: 539616
Number of extensions: 15384461
Number of successful extensions: 45628
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 45043
Number of HSP's gapped (non-prelim): 441
length of query: 973
length of database: 191,569,459
effective HSP length: 127
effective length of query: 846
effective length of database: 123,038,227
effective search space: 104090340042
effective search space used: 104090340042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)