Query 002070
Match_columns 973
No_of_seqs 343 out of 1899
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vnu_D Exosome complex exonucl 100.0 3E-132 1E-136 1214.0 67.3 666 152-972 6-687 (760)
2 2wp8_J Exosome complex exonucl 100.0 2E-130 7E-135 1216.6 62.4 664 155-972 226-904 (977)
3 2id0_A Exoribonuclease 2; RNAs 100.0 4E-112 1E-116 1021.5 52.0 565 166-972 8-578 (644)
4 2r7d_A Ribonuclease II family 100.0 1.1E-87 3.7E-92 781.1 38.1 387 451-972 20-422 (469)
5 1a62_A RHO; transcription term 88.8 0.57 1.9E-05 45.2 6.0 56 170-228 40-104 (130)
6 3bzc_A TEX; helix-turn-helix, 15.0 28 0.00097 42.8 -0.7 32 803-861 597-628 (785)
7 1u07_A TONB protein; beta-hair 14.9 1.7E+02 0.0059 25.2 4.6 22 601-622 26-47 (90)
8 3plx_B Aspartate 1-decarboxyla 12.6 1.8E+02 0.0063 26.6 4.1 42 182-224 22-63 (102)
9 3aqq_A Calcium-regulated heat 12.5 3.4E+02 0.012 26.4 6.3 55 172-226 56-112 (147)
10 2k9k_A TONB2; metal transport; 11.4 2E+02 0.0068 25.6 4.1 22 601-622 41-62 (106)
No 1
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=2.9e-132 Score=1213.98 Aligned_cols=666 Identities=30% Similarity=0.458 Sum_probs=547.7
Q ss_pred CCcCCccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCCCCccccCCCCEEEEEEccchhh
Q 002070 152 QSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLW 231 (973)
Q Consensus 152 ~~~~~k~~F~~hls~~~V~~gLk~G~l~qG~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rNRAl~GDiVaVeLlp~~~W 231 (973)
+.+.++.+|+||||+++|.+||++|+|++|+||||++|+.+|||.+++.+.||||+|.+++|||+|||+|+|+|+|..+|
T Consensus 6 ~~~~~~~~f~~yl~~~~l~~~~~~g~l~~G~l~~~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~~GD~V~V~i~~~~~~ 85 (760)
T 2vnu_D 6 RDTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEW 85 (760)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHTSEEEEEEEECSSBTTEEEECCSSSSSCEEEESHHHHTTCCTTCEEEEEECCGGGC
T ss_pred ccccCCCcCcccCCHHHHHHHHHcCCEEEEEEEEecCCCccEEEEcCCCCCCEEEcChhhhccccCCCEEEEEEeccccc
Confidence 44477889999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hhccCCCCCCCccccCCCcccccCCCcccccCCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCC
Q 002070 232 AKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGH 311 (973)
Q Consensus 232 ~~~k~~~~~~~~~~~~~~~~e~~e~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (973)
..+++.. ..++... ++.+.. |. .+...+++. .+ . +.
T Consensus 86 ~~~~~~~----~~~~~~~------~~~~~~-~~-----------------~~~~~~~~~-~~-----------~----~~ 121 (760)
T 2vnu_D 86 KAPSSIV----LDSEHFD------VNDNPD-IE-----------------AGDDDDNNE-SS-----------S----NT 121 (760)
T ss_dssp BCCCSSC----BCTTTCC--------------------------------------------------------------
T ss_pred ccccccc----ccccccc------cccccc-cc-----------------ccccccccc-cc-----------c----cc
Confidence 7644310 0000000 000000 00 000000000 00 0 00
Q ss_pred CCCCCCccccccccccccchhhhhheeeeee-cCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccC
Q 002070 312 HPSTSDSTEKVSSSQQNDGMNAIERLSAMIS-SYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNR 390 (973)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~-~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~k~~ 390 (973)
...++.......+ +. .+. ...+++|+|+||+||+|+++ .|||+|..... .
T Consensus 122 -~~~~~~~~~~~~~---------~~---~~~~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~--------------~ 172 (760)
T 2vnu_D 122 -TVISDKQRRLLAK---------DA---MIAQRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV--------------D 172 (760)
T ss_dssp ------------------------------------CBCBEEEEEEEECCCC--EEEEEECGGGC--------------C
T ss_pred -ccccchhhhhhhh---------hh---hhccccCCCCceEEEEEEEEECCc--eEEEEEEEccC--------------c
Confidence 0000000000000 00 000 01235789999999999974 59999973110 0
Q ss_pred CCCCCCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEecCCCCChhH
Q 002070 391 SSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEP 470 (973)
Q Consensus 391 ~~~~~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~s~~P~G~iv~~LG~~gd~~~ 470 (973)
. .....+++||+|.|+|+|.|.|++.+.+. +.+.+|+|+|++||..+.+|.|+|+++||..+++++
T Consensus 173 ~--~~~~~~~~~~~P~d~ri~~i~i~~~~~~~------------~~g~~vvv~i~~~p~~~~~p~G~i~~~LG~~~d~~~ 238 (760)
T 2vnu_D 173 P--QSSSTQNVFVILMDKCLPKVRIRTRRAAE------------LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQA 238 (760)
T ss_dssp T--TCCSCEEEEEEESSTTSCCEEEEETTGGG------------GTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHH
T ss_pred c--ccCccceEEEEECCCCCccEEEecccccc------------cCCCEEEEEEeeccCCCCCCcEEEEEEeCCCCCchh
Confidence 0 00112578999999999999898765321 235689999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCChhhhccCCCC--CCCCCh----------h-hhccCccCCCceEEEEcCCCCCCCCceEEEEEc
Q 002070 471 QINAILYENAICCSGFSPESLSCLPCV--PWEVPQ----------E-ELLSRKDLRNFCIFTIDPSTATDLDDALSIERL 537 (973)
Q Consensus 471 e~~ail~e~~l~~~~Fs~~vl~~l~~~--~~~i~~----------~-e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l 537 (973)
++++||.+|+|...+||++|++|++.. +|.+++ + +.++|+|||++++|||||++|+||||||||+++
T Consensus 239 e~~~il~~~~l~~~~F~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~ 318 (760)
T 2vnu_D 239 ETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKL 318 (760)
T ss_dssp HHHHHHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEEC
T ss_pred HHHHHHHHCCCCCcCCCHHHHHHHHhcccccccccccccccccccccchhcccccccCeEEEEcCCCCCcccceEEEEEc
Confidence 999999999996556999999999998 898873 3 678999999999999999999999999999999
Q ss_pred CCceEEEEEEEccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceEEEEEEEEEcCCCCEEEE
Q 002070 538 SDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR 617 (973)
Q Consensus 538 ~~G~~~lgVHIADVS~fV~~gS~LD~eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~~ 617 (973)
++|+|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+++
T Consensus 319 ~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~ 398 (760)
T 2vnu_D 319 PNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNV 398 (760)
T ss_dssp TTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEE
T ss_pred CCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCcccCHHHHHHHHccCCCccccCcCCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCC
Q 002070 618 WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK 697 (973)
Q Consensus 618 ~f~~SvIrS~~rLTYe~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~lA~~Lr~~R~~~Gal~l~~~e 697 (973)
+|++|+|+|+++|||++||++|++.. ...++.++|..|++||++||++|+++|+|+|+.|+
T Consensus 399 ~~~~svI~s~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe 459 (760)
T 2vnu_D 399 NFMKSVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALNLASPE 459 (760)
T ss_dssp EEEEEEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred EEEEEEEEecceEcHHHHHHHHhCCC-------------------cchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 99999999999999999999998731 12357789999999999999999999999999999
Q ss_pred ceeeeC-CCCCeeEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCChHHHHHHHHHHHHc-CCccCC
Q 002070 698 PVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-GLQLDT 775 (973)
Q Consensus 698 ~~~~lD-e~g~p~~~~~~~~~~s~~LIEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~~kl~~l~~~~~~~-G~~ld~ 775 (973)
++|.+| ++|.|+++..+++.+||+|||||||+||++||+|+.++++.|++||+|+.|++++++.|.+++..+ |+.++.
T Consensus 460 ~~~~ld~e~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~ 539 (760)
T 2vnu_D 460 VKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISL 539 (760)
T ss_dssp EEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCC
T ss_pred eEEEEecCCCcEEEEEEcCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCC
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred CChhHHHHHHHHHHHhhcCCHHHHHHHHHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHH
Q 002070 776 SSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRT 855 (973)
Q Consensus 776 ~~s~~l~~sL~~i~~~~~~~~~~~~~L~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~ 855 (973)
.+++.|+.+|.++.+ ..++.+..+|..+++|+|++|.|+|+|.+ ++.+.+|||||++.|||||||||||+|||||||
T Consensus 540 ~~~~~l~~~l~~~~~--~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~-~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~ 616 (760)
T 2vnu_D 540 ESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQ 616 (760)
T ss_dssp SCHHHHHHHHHTCCB--TTBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhC--CchHHHHHHHHHHHHHhhhCccccccCcC-CCCCCCceecCCCceeccCchHhhhHHHHHHHH
Confidence 888888888876543 24455556777788999999999999876 678999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHhhHHH
Q 002070 856 LNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLAC 935 (973)
Q Consensus 856 L~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~ia~~cNerk~~A 935 (973)
|+++|..++... | ....+.|..+|.|||+|++.|
T Consensus 617 L~~~l~~~~~~~------------------------~----------------------~~~~~~l~~~~~~~s~~er~A 650 (760)
T 2vnu_D 617 LAGAIGYEPLSL------------------------T----------------------HRDKNKMDMICRNINRKHRNA 650 (760)
T ss_dssp HHHHTTSSCCCG------------------------G----------------------GGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcc------------------------c----------------------ccCHHHHHHHHHHhhHHHHHH
Confidence 999997542100 0 002367899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccEeeCeEEEEEEeeeee
Q 002070 936 RNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIH 972 (973)
Q Consensus 936 r~a~~~~~~l~~~~~~k~~~~~~~~~iv~~~s~g~~~ 972 (973)
+.|++++.++|+|.||+.....+.+.|+.++.||+|.
T Consensus 651 ~~aer~~~~~~~~~~l~~~~~~~~g~V~~V~~~G~fV 687 (760)
T 2vnu_D 651 QFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVV 687 (760)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEEEEEEECCeEEE
Confidence 9999999999999999998766666666799999984
No 2
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-130 Score=1216.58 Aligned_cols=664 Identities=30% Similarity=0.452 Sum_probs=551.4
Q ss_pred CCccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCCCCccccCCCCEEEEEEccchhhhhc
Q 002070 155 ARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKM 234 (973)
Q Consensus 155 ~~k~~F~~hls~~~V~~gLk~G~l~qG~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rNRAl~GDiVaVeLlp~~~W~~~ 234 (973)
+++.+|+||||+++|.+||++|+|++|+||||++|+.+|||.+++.+.||||.|.+++|||+|||+|+|+|+|...|..+
T Consensus 226 ~~~~~f~~yl~~~~l~~~l~~g~l~~G~l~v~~~~~~egfV~~~~~~~DI~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~ 305 (977)
T 2wp8_J 226 FSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAP 305 (977)
T ss_dssp ---CCCCCCCCHHHHHHHHHTTSSEEEEEEECSSBTTEEEECCTTCSSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCC
T ss_pred cccCcCcCcCCHHHHHHHHHcCCEEEEEEEEccCCCccEEEEcCCCCCCEEEcChHHhhhCcCCCEEEEEEecccccccc
Confidence 67889999999999999999999999999999999999999999988999999999999999999999999999999764
Q ss_pred cCCCCCCCccccCCCcccccCCCcccccCCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCC
Q 002070 235 KGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPS 314 (973)
Q Consensus 235 k~~~~~~~~~~~~~~~~e~~e~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (973)
++.. ..+ +....+++..... ....+++. .+ .+ ...
T Consensus 306 ~~~~----~~~------~~~~~~~~~~~~~------------------~~~~~~~~------------~~----~~-~~~ 340 (977)
T 2wp8_J 306 SSIV----LDS------EHFDVNDNPDIEA------------------GDDDDNNE------------SS----SN-TTV 340 (977)
T ss_dssp CSCC----BCG------GGSSTTCCCCCC----------------------------------------------C-CCC
T ss_pred cccc----ccc------ccccccccccccc------------------cccccccc------------cc----cc-ccc
Confidence 4310 000 0000000000000 00000000 00 00 000
Q ss_pred CCCccccccccccccchhhhhheeeeeecCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCC
Q 002070 315 TSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLS 394 (973)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~k~~~~~~ 394 (973)
.++. +..+....... .....+++|+|+||+||+|+++ .|||+|..... ...
T Consensus 341 ~~~~--------~~~~~~~~~~~---~~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~------------~~~---- 391 (977)
T 2wp8_J 341 ISDK--------QRRLLAKDAMI---AQRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV------------DPQ---- 391 (977)
T ss_dssp CCHH--------HHHHHHHHHHH---HHHCSCCBCBEEEEEEEECCCC--EEEEEECGGGC------------CTT----
T ss_pred cchh--------hhhhhhhhhhh---ccccCCCCceEEEEEEEEECCC--eEEEEEEEecC------------ccc----
Confidence 0100 00000000000 0011235699999999999984 49999983210 000
Q ss_pred CCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEecCCCCChhHHHHH
Q 002070 395 VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINA 474 (973)
Q Consensus 395 ~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~s~~P~G~iv~~LG~~gd~~~e~~a 474 (973)
-...+++||+|.|+|+|.|.|++.+.+. +.+.+|+|+|++||..+.+|.|+|+++||..+++++++++
T Consensus 392 g~~~~~~~~~P~D~ri~~i~I~~~~~~~------------~~g~~vvv~I~~wp~~~~~p~G~iv~~LG~~~d~~~e~~~ 459 (977)
T 2wp8_J 392 SSSTQNVFVILMDKCLPKVRIRTRRAAE------------LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEA 459 (977)
T ss_dssp CCSCEEEEEEESSTTSCCEEEEETTTTG------------GGGEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHH
T ss_pred CCccceEEEEECCCCCccEEeccccccc------------cCCCEEEEEEeeccCCCCCccEEEEEEeCCCCCcchhHHH
Confidence 0112577999999999999998765431 2256899999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCChhhhccCCCC--CCCCC----------hh-hhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCce
Q 002070 475 ILYENAICCSGFSPESLSCLPCV--PWEVP----------QE-ELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 541 (973)
Q Consensus 475 il~e~~l~~~~Fs~~vl~~l~~~--~~~i~----------~~-e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~ 541 (973)
||.+|+|...+||++|++|++.+ +|.++ ++ +.++|+|||++++|||||++|+||||||||+++++|+
T Consensus 460 il~~~~l~~~~Fp~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~akDlDDAvsie~~~~G~ 539 (977)
T 2wp8_J 460 LLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGN 539 (977)
T ss_dssp HHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGCEECTTSCCEEEECTTCSCCCEEEEEEECTTSC
T ss_pred HHHHcCCCcccCCHHHHHHHHhcccccccccccccccccccccccccceecccCcEEEECCCCCCcccceEEEEEcCCCc
Confidence 99999996656999999999999 89877 34 7789999999999999999999999999999999999
Q ss_pred EEEEEEEccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceEEEEEEEEEcCCCCEEEEEEEE
Q 002070 542 SRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGR 621 (973)
Q Consensus 542 ~~lgVHIADVS~fV~~gS~LD~eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~~~f~~ 621 (973)
|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+++||++
T Consensus 540 ~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~LS~~lcSL~pg~dRla~Sv~~~id~~G~i~~~~~~~ 619 (977)
T 2wp8_J 540 WEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMK 619 (977)
T ss_dssp EEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCChHHhccccccCCCCceEEEEEEEEECCCCCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCHHHHHHHHccCCCccccCcCCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceee
Q 002070 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFL 701 (973)
Q Consensus 622 SvIrS~~rLTYe~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~lA~~Lr~~R~~~Gal~l~~~e~~~~ 701 (973)
|+|+|+++|||++||++|++... ..++.++|..|+++|++||++|+++|+|+|+.|+++|.
T Consensus 620 svIrs~~rltY~~v~~~l~~~~~-------------------~~~l~~~L~~L~~la~~Lr~~R~~~Gai~~~~pE~~~~ 680 (977)
T 2wp8_J 620 SVIRSREAFSYEQAQLRIDDKTQ-------------------NDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVH 680 (977)
T ss_dssp EEEEBSEEEEHHHHHHHHHCTTC-------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSHHHHTT
T ss_pred EEEEecceEcHHHHHHHHhCCCc-------------------chHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEE
Confidence 99999999999999999987311 23577899999999999999999999999999999999
Q ss_pred eC-CCCCeeEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCChHHHHHHHHHHHHc-CCccCCCChh
Q 002070 702 FD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-GLQLDTSSSG 779 (973)
Q Consensus 702 lD-e~g~p~~~~~~~~~~s~~LIEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~~kl~~l~~~~~~~-G~~ld~~~s~ 779 (973)
+| ++|.|+++..+++.+||.|||||||+||++||+|+.++++.|++||+|+.|++++++.|.+++..+ |+.++..+++
T Consensus 681 ld~e~g~~~~i~~~~~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl~~l~~~~~~~~G~~l~~~~~~ 760 (977)
T 2wp8_J 681 MDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSK 760 (977)
T ss_dssp SCCTTCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSSHH
T ss_pred eccCCCceEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHccCCCCCCCCHH
Confidence 99 889999999999999999999999999999999999998999999999999999999999999999 9999988889
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHHHHHH
Q 002070 780 QFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859 (973)
Q Consensus 780 ~l~~sL~~i~~~~~~~~~~~~~L~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~L~a~ 859 (973)
.|+.+|+++.+ ..++.+..++..+++|+|++|.|||+|.+ ++++.+|||||++.|||||||||||+||||||||+++
T Consensus 761 ~l~~~L~~~~~--~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~-s~~~~gHfgLa~~~YtHfTSPIRRY~DLivHR~L~a~ 837 (977)
T 2wp8_J 761 ALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGA 837 (977)
T ss_dssp HHHHHHHHCCC--SSCTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGSCBTTTTBSSCCCCSCTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--CchHHHHHHHHHHHHHhccCceeeccccc-CCCCCCceecCCCCeeccCchHhhHHHHHHHHHHHHH
Confidence 99988887654 24455556677788999999999999976 6789999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHhhHHHHHHH
Q 002070 860 LEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVK 939 (973)
Q Consensus 860 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~ia~~cNerk~~Ar~a~ 939 (973)
|.+++... | ..+.+.|..+|+|||+|+++|+.|+
T Consensus 838 L~~~~~~~------------------------~----------------------~~~~~~l~~i~~~~s~~er~A~~ae 871 (977)
T 2wp8_J 838 IGYEPLSL------------------------T----------------------HRDKNKMDMICRNINRKHRNAQFAG 871 (977)
T ss_dssp TTSSCCCG------------------------G----------------------GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcc------------------------c----------------------ccCHHHHHHHHHHhCHHHHHHHHHH
Confidence 97542100 0 0024578899999999999999999
Q ss_pred HHHHHHHHHHHHHhcccEeeCeEEEEEEeeeee
Q 002070 940 DACVKLYMWILLKKKEVLFSCLILYLTSFSTIH 972 (973)
Q Consensus 940 ~~~~~l~~~~~~k~~~~~~~~~iv~~~s~g~~~ 972 (973)
+++.++|+|.|++..|..+.+.|+.++.||||.
T Consensus 872 R~~~~~~~~~~l~~~ge~~~g~V~~V~~~G~fV 904 (977)
T 2wp8_J 872 RASIEYYVGQVMRNNESTETGYVIKVFNNGIVV 904 (977)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHhhhhcccceEEEEEEEEEcCCeEEE
Confidence 999999999999999877777777799999984
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=3.6e-112 Score=1021.51 Aligned_cols=565 Identities=20% Similarity=0.264 Sum_probs=481.2
Q ss_pred HHHHHHHHHcCC-eEEEEEEeccCCceeEEEEeCCcceeEEEeCCCCccccCCCCEEEEEEccchhhhhccCCCCCCCcc
Q 002070 166 MEAVNEALEKGD-AFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIV 244 (973)
Q Consensus 166 ~~~V~~gLk~G~-l~qG~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rNRAl~GDiVaVeLlp~~~W~~~k~~~~~~~~~ 244 (973)
..++...|.... ++.|+|+++++.+ +||..++ ..||||... ++|+|+|||.|.|++.+.
T Consensus 8 l~~lk~~~~~~~~~~~G~~~~~~~Gf--gF~~~d~-~~difi~~~-~~~~a~~GD~V~v~i~~~---------------- 67 (644)
T 2id0_A 8 LAQLKQQLHSQTPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPP-QMKKVMHGDRIIAVIHSE---------------- 67 (644)
T ss_dssp HHHHHHHHHHTSCEEEEEEECCSSSC--EEEECSS-SCEEEECHH-HHTTSCTTCEEEEEEECC----------------
T ss_pred HHHHHHhHHhhCCeEEEEEEEecCCc--EEEEECC-CCCEEECHH-HHhcCCCCCEEEEEEecC----------------
Confidence 455666666654 8999999998876 8999987 579999985 999999999999997431
Q ss_pred ccCCCcccccCCCcccccCCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCCCCCccccccc
Q 002070 245 EDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSS 324 (973)
Q Consensus 245 ~~~~~~~e~~e~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (973)
T Consensus 68 -------------------------------------------------------------------------------- 67 (644)
T 2id0_A 68 -------------------------------------------------------------------------------- 67 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhheeeeeecCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCCCCCCceEEEE
Q 002070 325 SQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLT 404 (973)
Q Consensus 325 ~~~~~~~~a~~~~~~~i~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 404 (973)
+.+++|+|++||+|+. ..+||++.. .+ ++.+++
T Consensus 68 ---------------------~~~~eg~v~~iler~~--~~~vg~~~~----------------~~--------~~~~v~ 100 (644)
T 2id0_A 68 ---------------------KERESAEPEELVEPFL--TRFVGKVQG----------------KN--------DRLAIV 100 (644)
T ss_dssp ---------------------SSSCEEEEEEEEECSC--SEEEEEEEE----------------ET--------TEEEEE
T ss_pred ---------------------CCCeEEEEEEEEecCC--CEEEEEEEE----------------eC--------CEEEEE
Confidence 0136899999999985 579999982 11 467899
Q ss_pred eCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCC-cEEEEEecCCCCChhHHHHHHHHHcCCCC
Q 002070 405 PTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFP-QAHVLHVFGRGGEVEPQINAILYENAICC 483 (973)
Q Consensus 405 P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~s~~P-~G~iv~~LG~~gd~~~e~~ail~e~~l~~ 483 (973)
|+|++++. .|+..+... ....+++ +.+|+|+|++||..+.+| .|+|+++||..+++.++++++|.+|+| +
T Consensus 101 pdd~~~~~-~i~~~~~~~-~~~~~~~------g~~v~v~i~~~p~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l-~ 171 (644)
T 2id0_A 101 PDHPLLKD-AIPCRAARG-LNHEFKE------GDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-E 171 (644)
T ss_dssp ESSTTCCS-CEECCBCSS-CCCCCCS------SCEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTC-C
T ss_pred ECCCCccc-ccccccccc-ccccCCC------CCEEEEEEecCcCCCCCCceEEEEEEeCCCCCccchHHHHHHHcCC-C
Confidence 99999988 776554321 1011133 458999999999998899 999999999999999999999999999 5
Q ss_pred CCCChhhhccCCCCCCCCChhhhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCceEEEEEEEccccccccCCCHhhH
Q 002070 484 SGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563 (973)
Q Consensus 484 ~~Fs~~vl~~l~~~~~~i~~~e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS~fV~~gS~LD~ 563 (973)
.+|++++++++ +++ .++|+|||++++|||||++|+||||||||+++++|+|+||||||||||||+|||+||+
T Consensus 172 ~~fp~~~~~~~-------~~~-~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~ 243 (644)
T 2id0_A 172 KEAPDGVATEM-------LDE-GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 (644)
T ss_dssp CSCCCCCCCCC-------CCS-CCCCCCCCSSCCBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHH
T ss_pred CCCChHHhhcC-------Ccc-cccceeccCCcEEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHHHH
Confidence 78998776552 222 3789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccceeecCCCcccCCChhhhhcccCCCCCCceEEEEEEEEEcCCCCEEE-EEEEEEEEecCcccCHHHHHHHHccC
Q 002070 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD-RWIGRTVIRSCCKLSYEHAQDIIDGK 642 (973)
Q Consensus 564 eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~-~~f~~SvIrS~~rLTYe~vq~iL~~~ 642 (973)
||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++ ++|++|+|+|+++|||++||++|+++
T Consensus 244 eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~p~~dR~a~s~~~~id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~~~ 323 (644)
T 2id0_A 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENT 323 (644)
T ss_dssp HHHHHCBCEEETTEEECSSCHHHHTTTSSCCSSCEEEEEEEEEEECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTTCC
T ss_pred HHHHhCCcEeCCCEEEeCCCHHHhcCcccCCCCCceEEEEEEEEEeCCCCEeeccEEEEEEEEeccccCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999874
Q ss_pred CCccccCcCCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceeeeCCCCCeeEEEeccCCcHHHH
Q 002070 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 722 (973)
Q Consensus 643 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~lA~~Lr~~R~~~Gal~l~~~e~~~~lDe~g~p~~~~~~~~~~s~~L 722 (973)
... .| ...++.+.|..|+++|++||++|.++|++.|+.|+++|.+|++|.|.++..+++.+||.|
T Consensus 324 ~~~---------~~------~~~~~~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~~g~~~~i~~~~~~~a~~l 388 (644)
T 2id0_A 324 GDW---------QP------ESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRI 388 (644)
T ss_dssp SSC---------CC------SCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCEEEEECTTSCEEEEEECCCCHHHHH
T ss_pred Ccc---------cc------ccHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCceEEEECCCCCEEEEEEecCCcHHHH
Confidence 210 01 135678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCChHHHHHHHHHHHHcCCccCCCChhHHHHHHHHHHHhhcCCHHHHHHH
Q 002070 723 FEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDIL 802 (973)
Q Consensus 723 IEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~~kl~~l~~~~~~~G~~ld~~~s~~l~~sL~~i~~~~~~~~~~~~~L 802 (973)
||||||+||++||+|+.+++ .|++||+|+.|++++++.|.+++..+|+.++..+..++ ..+.++.+.+.+.+.. ++
T Consensus 389 IeE~MllAN~~vA~~l~~~~-~~~lyR~h~~p~~~~l~~l~~~~~~~g~~l~~~~~~~~-~~~~~l~~~~~~~~~~--~l 464 (644)
T 2id0_A 389 VEEAMIAANICAARVLRDKL-GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTL-DGFCKLRRELDAQPTG--FL 464 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SCCCEEEBCCBCTTTHHHHHHHHHHHTCCCCHHHHTSH-HHHHHHHHHHHTSSSS--HH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCceeecCCCCCHHHHHHHHHHHHHcCCCCCCCcccCH-HHHHHHHHHhcCChHH--HH
Confidence 99999999999999999984 79999999999999999999999999999874322222 1233333333333322 46
Q ss_pred HHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCcccc
Q 002070 803 INYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGV 882 (973)
Q Consensus 803 ~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~L~a~L~~~~~~~~~~~~~~~~~~~~~~ 882 (973)
..+++|+|++|.| ++++.+|||||++.|||||||||||+||||||||+++|.+++..
T Consensus 465 ~~~l~r~~~~a~y-------s~~~~~HfgLa~~~YthfTSPIRRY~DLivHR~l~a~l~~~~~~---------------- 521 (644)
T 2id0_A 465 DSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT---------------- 521 (644)
T ss_dssp HHHHTTSBCCCEE-------ESSCCCBTTTTBSSCBCCSCTTTBHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHhcccccc-------cCCCCCchhcCCCceeeeCChhhcchHHHHHHHHHHHHcCCCCC----------------
Confidence 6677899999999 46899999999999999999999999999999999999754210
Q ss_pred ccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc-cc--Eee
Q 002070 883 RGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKK-EV--LFS 959 (973)
Q Consensus 883 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~ia~~cNerk~~Ar~a~~~~~~l~~~~~~k~~-~~--~~~ 959 (973)
| ....++.|||++++.|+.|++++.++++|.|++.. |. .+.
T Consensus 522 ---------~---------------------------~~~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~f~ 565 (644)
T 2id0_A 522 ---------R---------------------------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFA 565 (644)
T ss_dssp ---------C---------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCCEE
T ss_pred ---------c---------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEE
Confidence 0 00257889999999999999999999999999984 55 676
Q ss_pred CeEEEEEEeeeee
Q 002070 960 CLILYLTSFSTIH 972 (973)
Q Consensus 960 ~~iv~~~s~g~~~ 972 (973)
+.|+.++.||+|.
T Consensus 566 g~V~~V~~~G~fV 578 (644)
T 2id0_A 566 AEIVDISRGGMRV 578 (644)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEEEeCCceEE
Confidence 7777899999984
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=1.1e-87 Score=781.06 Aligned_cols=387 Identities=22% Similarity=0.252 Sum_probs=336.6
Q ss_pred CCCCcEEEEEecCCCCChhHHHHH-------------HHHHcCCCCCCCChhhhccCCCCCCCCChhhh-ccCccCCCce
Q 002070 451 SPFPQAHVLHVFGRGGEVEPQINA-------------ILYENAICCSGFSPESLSCLPCVPWEVPQEEL-LSRKDLRNFC 516 (973)
Q Consensus 451 s~~P~G~iv~~LG~~gd~~~e~~a-------------il~e~~l~~~~Fs~~vl~~l~~~~~~i~~~e~-~~R~DLr~l~ 516 (973)
+..|.|+|+++||..+++..+++. ++.++++ +..|+ + ++. ++.+. ++|+|||+++
T Consensus 20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~l-p~~fp--~---l~~-----~~~~~~~~R~Dlr~l~ 88 (469)
T 2r7d_A 20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRA-ALNAV--E---LPV-----PDFDPAEERLDLTHLP 88 (469)
T ss_dssp TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTC-CCSCC--C---CCC-----CCCCTTSCCEECTTSC
T ss_pred CCCcceeEeeecCCCCChhhHHHHHHhcCCCCchhhHHHHHcCC-CCCCc--c---cCC-----CCcccccCceecccCC
Confidence 567999999999999999999865 4446777 56787 1 111 12233 6899999999
Q ss_pred EEEEcCCCCCCCCceEEEEEcCCceEEEEEEEccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCC
Q 002070 517 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 596 (973)
Q Consensus 517 vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS~fV~~gS~LD~eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg 596 (973)
+|||||++|+||||||||+++++|+|+||||||||||||+|||+||+||++||||||||++++||||+.| +++|||+||
T Consensus 89 ~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL~pg 167 (469)
T 2r7d_A 89 TFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGLGLH 167 (469)
T ss_dssp EEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHSTTSS
T ss_pred EEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH-hcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CceEEEEEEEEEcCCCCEEEEEEEEEEEecCcccCHHHHHHHHccCCCccccCcCCCCCCcccCCCchhhHHHHHHHHHH
Q 002070 597 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 676 (973)
Q Consensus 597 ~dRlA~Sv~~~id~~G~i~~~~f~~SvIrS~~rLTYe~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~ 676 (973)
++|+||||.|+||++|+|++++|++|+|+|+ +|||++||++|+++ . +.|..|++
T Consensus 168 ~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~----~---------------------~~L~~L~~ 221 (469)
T 2r7d_A 168 EVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAG----E---------------------EPFVTLAR 221 (469)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTT----C---------------------TTHHHHHH
T ss_pred CceEEEEEEEEEcCCCCEeeeEEEEEEEEec-cccHHHHHHHHhCC----c---------------------HHHHHHHH
Confidence 9999999999999999999999999999999 99999999999873 0 34889999
Q ss_pred HHHHHHHHHhcCCCccccCCCceeeeCCCCCeeEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCCh
Q 002070 677 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNM 756 (973)
Q Consensus 677 lA~~Lr~~R~~~Gal~l~~~e~~~~lDe~g~p~~~~~~~~~~s~~LIEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~ 756 (973)
+|++||++|.++|+++|+.|+.+|.+|++ +..+...++.+||.|||||||+||++||+|+.++ +.|++||+|+.|+.
T Consensus 222 la~~lr~~R~~~Gai~~~~pe~~i~~d~~--~~~i~~~~~~~a~~lIeE~MilAN~~vA~~l~~~-~ip~~yR~h~~p~~ 298 (469)
T 2r7d_A 222 LARASRRLREGEGALSIDLPEVRVKADET--GASVFPLPKPEMRTVVQECMTLAGWGTAIFADDN-EIPLPFATQDYPTR 298 (469)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCEEEEEETT--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEECCCSS
T ss_pred HHHHHHHHHHhCCCcccCCCceEEEECCC--cceEEecCCCcHHHHHHHHHHHHHHHHHHHHHHc-CCCeeEeeCCCCCc
Confidence 99999999999999999999999999977 7888889999999999999999999999999986 78999999999986
Q ss_pred HHHHHHHHHHHHcCCccCCCChhHHHHHHHHHHHhhcCCHHHHHHHHHHHcccccCceecccCCCCCCCCcccccccCCC
Q 002070 757 RKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPV 836 (973)
Q Consensus 757 ~kl~~l~~~~~~~G~~ld~~~s~~l~~sL~~i~~~~~~~~~~~~~L~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~ 836 (973)
.++ + ... ++..+++|+|++|.|+ +.+.+|||||++.
T Consensus 299 ~~~--------------~-------------------~~~----~~~~~l~r~m~~a~y~-------~~~~~HfgL~~~~ 334 (469)
T 2r7d_A 299 EVA--------------G-------------------DTL----PAMWARRKTLARTRFQ-------PSPGPHHGMGLDL 334 (469)
T ss_dssp CCC--------------C-------------------CSH----HHHHHHHHHCCCEEEE-------SSCCCBTTTTBSC
T ss_pred ccC--------------c-------------------chH----HHHHHHHHhccccccc-------CCCCCchhhCccc
Confidence 553 0 111 1233457899999994 5789999999999
Q ss_pred ccccccccCchhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCC
Q 002070 837 YTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVP 916 (973)
Q Consensus 837 YTHFTSPIRRYaDLiVHR~L~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~ 916 (973)
|||||||||||+||+|||||+++|.+++ .|
T Consensus 335 YthfTSPIRRY~DLivHr~L~a~l~~~~--------------------------~~------------------------ 364 (469)
T 2r7d_A 335 YAQATSPMRRYLDLVVHQQLRAFLAGRD--------------------------PL------------------------ 364 (469)
T ss_dssp CCCCSCTTTBHHHHHHHHHHHHHHTTCC--------------------------CC------------------------
T ss_pred eeeECCcccccHHHHHHHHHHHHHcCCC--------------------------CC------------------------
Confidence 9999999999999999999999997431 01
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccEeeCeEEEE--EEeeeee
Q 002070 917 CADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYL--TSFSTIH 972 (973)
Q Consensus 917 ~~~~l~~ia~~cNerk~~Ar~a~~~~~~l~~~~~~k~~~~~~~~~iv~~--~s~g~~~ 972 (973)
..+.|..++.|||.++++|+.||+++.++|++.|++.......+|+|.- ...|++|
T Consensus 365 ~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~~~glV~ 422 (469)
T 2r7d_A 365 SSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGAQATLL 422 (469)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEEeCcEEEEE
Confidence 1357889999999999999999999999999999998544444555542 2345554
No 5
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=88.81 E-value=0.57 Score=45.17 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHHcCCe--EEEEEEeccCCceeEEEEeCC-----cceeEEEeCCCCcc--ccCCCCEEEEEEccc
Q 002070 170 NEALEKGDA--FKALYRVNAHNRLEAYCKIEG-----VQTDVLITGIAAQN--RAVEGDFVLIKVDRL 228 (973)
Q Consensus 170 ~~gLk~G~l--~qG~LRVN~~N~~eAyV~~~g-----~~~DVlI~G~~~rN--RAl~GDiVaVeLlp~ 228 (973)
.+..++|.+ +.|+|.|.+..| +|+..++ .+.||||.-. ..+ .+.+||+|.+++-|.
T Consensus 40 ~~~~~~~~~~~~~Gvlei~~dG~--GFlr~~~~~y~~~~~DiyVs~~-~irrf~lr~GD~V~g~vr~~ 104 (130)
T 1a62_A 40 KQHAKSGEDIFGDGVLEILQDGF--GFLRSADSSYLAGPDDIYVSPS-QIRRFNLRTGDTISGKIRPP 104 (130)
T ss_dssp HHHHHTTCCEEEEEEEEECTTSC--EEEECGGGTTCCCTTCEEECHH-HHHHTTCCTTCEEEEEEECC
T ss_pred HHHHhcCCeEEEEEEEEEcCCCe--EEEecCCcCCCCCCCCEEECHH-HHhHhCCCCCCEEEEEEeCC
Confidence 344455654 799999998877 8999983 3789999975 344 899999999998664
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=14.99 E-value=28 Score=42.82 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHHHHHHHH
Q 002070 803 INYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALE 861 (973)
Q Consensus 803 ~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~L~a~L~ 861 (973)
....+|.|.+|.| +. .||||+ +|||+|+.++.
T Consensus 597 ~~~~Lrsl~~a~Y-------a~---~hfGl~-----------------tl~rIi~eL~k 628 (785)
T 3bzc_A 597 DSAFLKRLDPKKF-------TD---ETFGLP-----------------TVTDILKELDK 628 (785)
T ss_dssp CHHHHHHSCGGGT-------CC---SSSCHH-----------------HHHHHHHHHHS
T ss_pred hHHHHHhcCHHHH-------hh---hcCCcH-----------------HHHHHHHHHhc
Confidence 3446899999999 21 499976 89999988774
No 7
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=14.91 E-value=1.7e+02 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.3
Q ss_pred EEEEEEEEcCCCCEEEEEEEEE
Q 002070 601 AFSIFWDLNSAGDVVDRWIGRT 622 (973)
Q Consensus 601 A~Sv~~~id~~G~i~~~~f~~S 622 (973)
.+.|.+.|+++|+|.+.++.+|
T Consensus 26 ~V~v~~~i~~~G~v~~~~v~~s 47 (90)
T 1u07_A 26 QVKVKFDVTPDGRVDNVQILSA 47 (90)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEec
Confidence 4678888999999999887665
No 8
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=12.64 E-value=1.8e+02 Score=26.63 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=33.6
Q ss_pred EEEeccCCceeEEEEeCCcceeEEEeCCCCccccCCCCEEEEE
Q 002070 182 LYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIK 224 (973)
Q Consensus 182 ~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rNRAl~GDiVaVe 224 (973)
+..+|-.+|.+-||--......|-++|..+| .+--||+|.|-
T Consensus 22 I~NvnNG~Rf~TYvI~GeGSG~I~lNGAAAr-l~~~GD~vII~ 63 (102)
T 3plx_B 22 VVNVNNGARFETYTIATQEEGVVCLNGAAAR-LAEVGDKVIIM 63 (102)
T ss_dssp EEETTTCCEEEEECEEESSTTCEEEEGGGGG-GCCTTCEEEEE
T ss_pred EEECCCCcEEEEEEEEcCCCCEEEeCcHHHh-ccCCCCEEEEE
Confidence 6778888999999965434567999998776 67889999775
No 9
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=12.46 E-value=3.4e+02 Score=26.35 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCCCCcc--ccCCCCEEEEEEc
Q 002070 172 ALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQN--RAVEGDFVLIKVD 226 (973)
Q Consensus 172 gLk~G~l~qG~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rN--RAl~GDiVaVeLl 226 (973)
.-..|...+|++.---....-+||+.++-..|||+.-..-.. +--+||.|-+++-
T Consensus 56 ~~~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~eGq~V~Fev~ 112 (147)
T 3aqq_A 56 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMC 112 (147)
T ss_dssp HHHHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSBCCCTTCEEEEEEE
T ss_pred ccccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCCcCCCCCEEEEEEE
Confidence 456788999988754334455899998877899987553322 5678999988873
No 10
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=11.42 E-value=2e+02 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=18.1
Q ss_pred EEEEEEEEcCCCCEEEEEEEEE
Q 002070 601 AFSIFWDLNSAGDVVDRWIGRT 622 (973)
Q Consensus 601 A~Sv~~~id~~G~i~~~~f~~S 622 (973)
.+.|.+.||++|+|.+.++.+|
T Consensus 41 ~V~v~f~I~~~G~v~~~~v~~s 62 (106)
T 2k9k_A 41 FVTLSFTIDTTGKAVDINVVDA 62 (106)
T ss_dssp EEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEc
Confidence 4677888999999999887654
Done!