Query 002071
Match_columns 973
No_of_seqs 493 out of 4089
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 15:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-90 2.7E-95 822.5 45.9 774 3-842 2-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-63 3.3E-68 627.2 47.7 685 180-935 181-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.5E-44 1.4E-48 386.2 13.1 279 188-473 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.8E-24 8.3E-29 271.3 17.9 356 546-934 70-465 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.7E-23 3.8E-28 265.3 15.8 352 545-935 118-489 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.2E-24 6.9E-29 229.4 -4.9 338 546-937 33-378 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 4.5E-23 9.9E-28 220.6 -5.6 323 544-914 54-379 (1255)
8 PLN03210 Resistant to P. syrin 99.8 8.8E-19 1.9E-23 222.0 19.0 301 590-936 550-884 (1153)
9 KOG4194 Membrane glycoprotein 99.8 7.1E-20 1.5E-24 195.6 6.6 335 568-938 78-433 (873)
10 KOG4194 Membrane glycoprotein 99.8 3.7E-20 7.9E-25 197.7 4.0 344 545-932 102-450 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 4.9E-20 1.1E-24 188.5 -5.1 237 548-825 71-307 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 4.9E-18 1.1E-22 174.1 -8.3 255 552-847 52-306 (565)
13 KOG0618 Serine/threonine phosp 99.6 5.2E-17 1.1E-21 183.5 -6.5 102 569-683 46-147 (1081)
14 KOG0618 Serine/threonine phosp 99.5 5.3E-16 1.2E-20 175.5 -1.8 343 560-934 13-420 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 8.2E-14 1.8E-18 163.6 14.2 260 598-936 201-460 (788)
16 PRK04841 transcriptional regul 99.4 2.3E-11 4.9E-16 154.0 25.4 292 183-522 14-332 (903)
17 PRK00411 cdc6 cell division co 99.4 2.2E-10 4.7E-15 130.0 29.1 317 180-511 27-374 (394)
18 PRK15370 E3 ubiquitin-protein 99.4 9.5E-13 2.1E-17 155.9 9.4 245 599-934 179-428 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.3 4.2E-13 9.1E-18 161.4 3.4 319 565-931 520-856 (889)
20 KOG0617 Ras suppressor protein 99.3 4.6E-14 1E-18 128.4 -5.3 86 622-709 29-114 (264)
21 KOG0617 Ras suppressor protein 99.3 8.4E-14 1.8E-18 126.7 -5.1 155 565-737 30-185 (264)
22 PRK15387 E3 ubiquitin-protein 99.2 2.2E-11 4.8E-16 143.4 11.0 97 569-691 223-319 (788)
23 PRK15370 E3 ubiquitin-protein 99.2 2.7E-11 5.9E-16 143.7 11.8 240 547-847 180-424 (754)
24 TIGR03015 pepcterm_ATPase puta 99.2 9.2E-10 2E-14 117.8 21.1 183 209-396 42-242 (269)
25 TIGR02928 orc1/cdc6 family rep 99.2 6.9E-09 1.5E-13 116.4 27.7 303 180-498 12-351 (365)
26 cd00116 LRR_RI Leucine-rich re 99.1 3.2E-12 6.8E-17 141.0 -2.4 93 592-684 17-119 (319)
27 PF01637 Arch_ATPase: Archaeal 99.1 3.5E-10 7.5E-15 118.5 11.8 196 185-391 1-233 (234)
28 KOG4237 Extracellular matrix p 99.1 1.5E-11 3.2E-16 127.0 0.6 129 544-683 66-198 (498)
29 PRK00080 ruvB Holliday junctio 99.1 1.9E-09 4.1E-14 118.2 16.9 275 183-496 25-309 (328)
30 TIGR00635 ruvB Holliday juncti 99.1 8.6E-10 1.9E-14 120.2 13.1 268 183-496 4-288 (305)
31 COG2909 MalT ATP-dependent tra 99.1 1.8E-08 3.9E-13 115.3 23.0 297 183-523 19-339 (894)
32 PF05729 NACHT: NACHT domain 99.0 2.8E-09 6E-14 104.9 12.7 143 211-359 1-163 (166)
33 cd00116 LRR_RI Leucine-rich re 99.0 3.1E-11 6.8E-16 133.1 -1.6 121 564-686 19-150 (319)
34 KOG4237 Extracellular matrix p 98.9 4.4E-11 9.6E-16 123.6 -4.5 267 570-875 69-354 (498)
35 PRK06893 DNA replication initi 98.9 7.3E-08 1.6E-12 99.5 16.4 151 210-391 39-202 (229)
36 PTZ00112 origin recognition co 98.8 5.1E-07 1.1E-11 104.3 24.3 300 182-496 754-1085(1164)
37 PF13401 AAA_22: AAA domain; P 98.6 8.2E-08 1.8E-12 90.1 8.5 118 209-328 3-125 (131)
38 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.4E-07 1.4E-11 93.0 15.6 169 188-393 22-202 (226)
39 PRK13342 recombination factor 98.6 3.9E-07 8.5E-12 103.0 14.4 176 183-392 12-196 (413)
40 COG2256 MGS1 ATPase related to 98.6 4.2E-07 9.2E-12 95.7 12.0 173 180-387 27-207 (436)
41 KOG1909 Ran GTPase-activating 98.6 6.1E-09 1.3E-13 106.8 -1.9 90 751-847 180-279 (382)
42 COG3899 Predicted ATPase [Gene 98.6 1.5E-06 3.2E-11 106.0 18.0 310 185-518 2-382 (849)
43 KOG4341 F-box protein containi 98.5 4.6E-09 9.9E-14 110.0 -3.8 312 598-960 138-461 (483)
44 KOG3207 Beta-tubulin folding c 98.5 2.8E-08 6.1E-13 104.7 1.7 137 755-907 196-336 (505)
45 TIGR02903 spore_lon_C ATP-depe 98.5 2.6E-05 5.6E-10 92.1 26.2 203 183-395 154-398 (615)
46 PRK14961 DNA polymerase III su 98.5 4.9E-06 1.1E-10 92.3 18.8 190 183-389 16-217 (363)
47 PRK05564 DNA polymerase III su 98.5 3.5E-06 7.7E-11 91.7 17.4 179 183-391 4-189 (313)
48 PRK14963 DNA polymerase III su 98.5 6.3E-07 1.4E-11 102.4 11.4 201 183-395 14-221 (504)
49 PF14580 LRR_9: Leucine-rich r 98.5 9.7E-08 2.1E-12 92.3 4.0 128 566-708 17-151 (175)
50 PF13191 AAA_16: AAA ATPase do 98.5 3.1E-07 6.7E-12 92.1 7.9 48 184-234 1-48 (185)
51 KOG0532 Leucine-rich repeat (L 98.5 8.5E-09 1.8E-13 111.9 -4.2 102 594-703 94-195 (722)
52 PRK07003 DNA polymerase III su 98.5 1.2E-05 2.6E-10 93.0 20.9 182 183-394 16-223 (830)
53 KOG1909 Ran GTPase-activating 98.5 2.2E-08 4.8E-13 102.8 -1.1 260 565-849 27-309 (382)
54 cd01128 rho_factor Transcripti 98.5 2.4E-07 5.3E-12 95.5 6.4 90 210-300 16-114 (249)
55 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 107.9 4.3 183 594-833 112-295 (394)
56 PRK12402 replication factor C 98.4 4.4E-06 9.6E-11 92.7 16.6 195 183-390 15-224 (337)
57 cd00009 AAA The AAA+ (ATPases 98.4 1.5E-06 3.2E-11 83.4 11.3 125 186-330 1-131 (151)
58 KOG3207 Beta-tubulin folding c 98.4 6.9E-08 1.5E-12 101.9 1.7 155 544-706 120-280 (505)
59 PTZ00202 tuzin; Provisional 98.4 8E-06 1.7E-10 87.8 17.1 170 178-359 257-434 (550)
60 PRK14949 DNA polymerase III su 98.4 5.5E-06 1.2E-10 97.7 17.2 181 183-390 16-218 (944)
61 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3.1E-11 81.0 9.9 120 210-351 2-127 (128)
62 PRK14960 DNA polymerase III su 98.4 7.3E-06 1.6E-10 93.8 17.2 191 183-389 15-216 (702)
63 COG1474 CDC6 Cdc6-related prot 98.4 2.5E-05 5.5E-10 85.5 20.9 207 182-392 16-238 (366)
64 KOG1259 Nischarin, modulator o 98.4 7.5E-08 1.6E-12 96.2 1.1 211 641-915 206-416 (490)
65 KOG0532 Leucine-rich repeat (L 98.4 1.6E-08 3.4E-13 109.8 -4.4 168 549-737 79-246 (722)
66 PRK04195 replication factor C 98.4 3.2E-05 6.9E-10 89.4 22.2 248 183-472 14-272 (482)
67 PRK08727 hypothetical protein; 98.4 1.3E-05 2.7E-10 83.0 17.0 148 211-389 42-201 (233)
68 PRK00440 rfc replication facto 98.4 1.2E-05 2.7E-10 88.4 17.5 179 183-388 17-199 (319)
69 PRK14957 DNA polymerase III su 98.3 1.1E-05 2.3E-10 92.5 16.5 185 183-394 16-223 (546)
70 PF14580 LRR_9: Leucine-rich r 98.3 1.1E-07 2.5E-12 91.8 0.4 105 594-707 15-123 (175)
71 PRK06645 DNA polymerase III su 98.3 1.8E-05 3.9E-10 90.1 17.9 192 183-387 21-224 (507)
72 PRK08084 DNA replication initi 98.3 2.5E-05 5.3E-10 81.0 17.5 150 210-390 45-207 (235)
73 PRK12323 DNA polymerase III su 98.3 1.3E-05 2.8E-10 91.5 16.3 197 183-390 16-223 (700)
74 PLN03025 replication factor C 98.3 1.5E-05 3.2E-10 87.1 16.2 180 183-387 13-195 (319)
75 PRK14962 DNA polymerase III su 98.3 1.6E-05 3.5E-10 90.2 17.0 200 183-409 14-239 (472)
76 COG3903 Predicted ATPase [Gene 98.3 1.5E-06 3.2E-11 92.5 7.7 244 209-467 13-266 (414)
77 PRK08903 DnaA regulatory inact 98.3 1.8E-05 3.9E-10 82.1 15.7 153 209-396 41-203 (227)
78 PRK13341 recombination factor 98.3 5.8E-06 1.3E-10 98.3 13.3 169 183-387 28-212 (725)
79 PF05496 RuvB_N: Holliday junc 98.3 9.4E-06 2E-10 80.2 12.0 175 183-390 24-219 (233)
80 PRK09376 rho transcription ter 98.3 2.3E-06 4.9E-11 91.8 8.2 102 193-300 157-267 (416)
81 PRK05896 DNA polymerase III su 98.3 2.6E-05 5.7E-10 89.3 17.2 196 183-394 16-223 (605)
82 TIGR02397 dnaX_nterm DNA polym 98.3 4.1E-05 8.8E-10 85.6 18.7 182 183-392 14-218 (355)
83 PRK07994 DNA polymerase III su 98.2 2.3E-05 5E-10 91.2 16.4 194 183-392 16-221 (647)
84 PRK14956 DNA polymerase III su 98.2 6.8E-06 1.5E-10 91.5 11.5 194 183-392 18-223 (484)
85 PRK05642 DNA replication initi 98.2 3.6E-05 7.9E-10 79.6 16.3 151 210-391 45-207 (234)
86 PRK14955 DNA polymerase III su 98.2 2.6E-05 5.7E-10 87.6 15.9 200 183-392 16-229 (397)
87 PRK14951 DNA polymerase III su 98.2 3.5E-05 7.6E-10 89.6 17.2 194 183-389 16-222 (618)
88 PRK14964 DNA polymerase III su 98.2 4.5E-05 9.7E-10 86.2 17.4 181 183-389 13-214 (491)
89 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 102.7 6.5 93 599-695 419-512 (623)
90 PRK08691 DNA polymerase III su 98.2 1.5E-05 3.3E-10 92.2 13.6 196 183-394 16-223 (709)
91 PRK09087 hypothetical protein; 98.2 2.2E-05 4.7E-10 80.5 13.4 141 210-391 44-194 (226)
92 PRK14958 DNA polymerase III su 98.2 4.2E-05 9E-10 87.9 16.9 181 183-389 16-217 (509)
93 PRK09112 DNA polymerase III su 98.2 5.1E-05 1.1E-09 82.9 16.2 195 183-392 23-240 (351)
94 PRK07940 DNA polymerase III su 98.1 7.4E-05 1.6E-09 82.8 17.4 180 183-392 5-213 (394)
95 TIGR00678 holB DNA polymerase 98.1 8.2E-05 1.8E-09 74.5 16.3 90 288-387 95-186 (188)
96 PRK07471 DNA polymerase III su 98.1 8.9E-05 1.9E-09 81.5 17.8 191 183-392 19-238 (365)
97 PLN03150 hypothetical protein; 98.1 4.2E-06 9.2E-11 99.6 8.0 110 569-688 419-530 (623)
98 PF00308 Bac_DnaA: Bacterial d 98.1 0.00011 2.4E-09 75.1 16.5 183 183-390 9-206 (219)
99 COG4886 Leucine-rich repeat (L 98.1 2.7E-06 5.8E-11 96.6 5.0 176 565-768 113-289 (394)
100 PRK14969 DNA polymerase III su 98.1 7E-05 1.5E-09 86.7 16.4 182 183-394 16-223 (527)
101 PRK09111 DNA polymerase III su 98.1 8.7E-05 1.9E-09 86.5 17.2 195 183-390 24-231 (598)
102 TIGR00767 rho transcription te 98.1 8.4E-06 1.8E-10 88.1 7.5 90 210-300 168-266 (415)
103 KOG2028 ATPase related to the 98.1 3.5E-05 7.6E-10 79.7 11.5 130 207-358 159-293 (554)
104 PF13855 LRR_8: Leucine rich r 98.0 5.5E-06 1.2E-10 65.5 4.2 56 627-683 2-59 (61)
105 PRK14954 DNA polymerase III su 98.0 0.00019 4.2E-09 83.8 18.3 201 183-392 16-229 (620)
106 PRK07764 DNA polymerase III su 98.0 0.00014 3E-09 87.9 17.3 197 183-395 15-225 (824)
107 PRK14959 DNA polymerase III su 98.0 0.00016 3.4E-09 83.6 16.8 198 183-396 16-225 (624)
108 PRK14952 DNA polymerase III su 98.0 0.00022 4.7E-09 82.8 18.1 198 183-396 13-224 (584)
109 KOG1259 Nischarin, modulator o 98.0 1.1E-06 2.3E-11 88.1 -0.6 127 566-708 282-410 (490)
110 PRK14970 DNA polymerase III su 98.0 0.00022 4.8E-09 79.8 17.6 185 183-393 17-211 (367)
111 PRK14087 dnaA chromosomal repl 98.0 0.00013 2.8E-09 82.8 15.8 168 210-393 141-320 (450)
112 PRK14950 DNA polymerase III su 98.0 0.0001 2.3E-09 86.9 15.5 194 183-391 16-220 (585)
113 KOG2120 SCF ubiquitin ligase, 98.0 3.8E-07 8.3E-12 91.4 -4.0 162 751-932 205-374 (419)
114 PF13855 LRR_8: Leucine rich r 98.0 8.1E-06 1.8E-10 64.5 4.2 58 598-660 1-60 (61)
115 TIGR01242 26Sp45 26S proteasom 98.0 5E-05 1.1E-09 84.6 12.0 182 179-386 118-328 (364)
116 KOG2120 SCF ubiquitin ligase, 98.0 3.7E-07 8E-12 91.6 -4.6 83 599-684 186-271 (419)
117 PRK14953 DNA polymerase III su 97.9 0.00046 9.9E-09 79.0 19.1 183 183-392 16-220 (486)
118 PRK07133 DNA polymerase III su 97.9 0.00034 7.4E-09 82.2 18.3 194 183-393 18-221 (725)
119 KOG2227 Pre-initiation complex 97.9 0.00038 8.2E-09 75.2 16.8 212 182-395 149-375 (529)
120 PRK11331 5-methylcytosine-spec 97.9 5E-05 1.1E-09 83.6 10.5 120 183-314 175-298 (459)
121 COG2255 RuvB Holliday junction 97.9 0.00071 1.5E-08 68.5 17.2 174 183-389 26-220 (332)
122 PF14516 AAA_35: AAA-like doma 97.9 0.0014 3.1E-08 71.6 21.4 202 181-399 9-246 (331)
123 PRK14971 DNA polymerase III su 97.9 0.0004 8.6E-09 81.8 18.1 180 183-389 17-219 (614)
124 PRK08451 DNA polymerase III su 97.9 0.00057 1.2E-08 78.1 18.7 178 183-391 14-217 (535)
125 KOG4341 F-box protein containi 97.9 7.8E-07 1.7E-11 93.6 -3.9 267 627-940 139-420 (483)
126 PF05621 TniB: Bacterial TniB 97.9 0.00029 6.3E-09 73.3 14.6 200 184-387 35-256 (302)
127 PRK14948 DNA polymerase III su 97.9 0.00055 1.2E-08 80.6 18.4 194 183-390 16-220 (620)
128 CHL00181 cbbX CbbX; Provisiona 97.8 0.00071 1.5E-08 72.1 17.4 136 210-361 59-211 (287)
129 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.3E-10 56.9 3.8 39 627-666 2-40 (44)
130 PRK12422 chromosomal replicati 97.8 0.00066 1.4E-08 76.8 17.9 153 210-384 141-305 (445)
131 TIGR00362 DnaA chromosomal rep 97.8 0.00084 1.8E-08 76.1 18.5 157 210-388 136-306 (405)
132 TIGR02880 cbbX_cfxQ probable R 97.8 0.00066 1.4E-08 72.4 16.5 135 211-361 59-210 (284)
133 PRK06620 hypothetical protein; 97.8 0.00079 1.7E-08 68.4 16.2 132 211-387 45-184 (214)
134 PRK06305 DNA polymerase III su 97.8 0.00088 1.9E-08 76.2 18.3 183 183-393 17-224 (451)
135 KOG2543 Origin recognition com 97.8 0.0014 3.1E-08 69.1 17.8 169 182-359 5-193 (438)
136 TIGR02881 spore_V_K stage V sp 97.8 0.00047 1E-08 72.9 14.9 162 184-361 7-193 (261)
137 COG5238 RNA1 Ran GTPase-activa 97.7 1.3E-05 2.9E-10 79.5 2.1 90 594-683 26-130 (388)
138 KOG2982 Uncharacterized conser 97.7 1.4E-05 3E-10 80.5 2.2 204 594-846 67-287 (418)
139 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0004 8.6E-09 85.1 15.0 152 183-358 187-362 (852)
140 PRK14086 dnaA chromosomal repl 97.7 0.0011 2.4E-08 76.3 17.6 154 211-386 315-482 (617)
141 PRK14088 dnaA chromosomal repl 97.7 0.00068 1.5E-08 77.0 15.8 157 210-387 130-300 (440)
142 PRK14965 DNA polymerase III su 97.7 0.00088 1.9E-08 78.7 17.1 196 183-394 16-223 (576)
143 PHA02544 44 clamp loader, smal 97.7 0.00041 8.9E-09 76.1 13.4 149 182-357 20-171 (316)
144 PRK06647 DNA polymerase III su 97.7 0.0014 3.1E-08 76.2 18.0 191 183-389 16-217 (563)
145 KOG0531 Protein phosphatase 1, 97.7 8.3E-06 1.8E-10 92.8 -0.8 83 594-684 91-173 (414)
146 KOG0531 Protein phosphatase 1, 97.6 1.1E-05 2.4E-10 91.8 -0.4 81 595-683 115-196 (414)
147 KOG0989 Replication factor C, 97.6 0.00069 1.5E-08 69.4 12.2 183 183-386 36-224 (346)
148 PRK00149 dnaA chromosomal repl 97.6 0.0013 2.8E-08 75.5 16.4 156 210-387 148-317 (450)
149 PRK03992 proteasome-activating 97.6 0.00039 8.4E-09 77.8 11.8 181 180-386 128-337 (389)
150 PRK15386 type III secretion pr 97.6 0.00026 5.6E-09 77.2 9.7 63 595-667 49-112 (426)
151 PF00004 AAA: ATPase family as 97.6 0.0003 6.4E-09 65.9 9.1 96 213-328 1-111 (132)
152 PRK05563 DNA polymerase III su 97.6 0.0028 6.1E-08 74.2 18.8 191 183-389 16-217 (559)
153 COG0593 DnaA ATPase involved i 97.6 0.0059 1.3E-07 66.9 19.9 138 209-363 112-261 (408)
154 PRK05707 DNA polymerase III su 97.6 0.0018 3.8E-08 70.3 15.9 97 288-392 105-203 (328)
155 PF12799 LRR_4: Leucine Rich r 97.6 9.2E-05 2E-09 53.5 3.9 41 598-643 1-41 (44)
156 PF05673 DUF815: Protein of un 97.5 0.0024 5.2E-08 64.4 14.5 109 181-316 25-134 (249)
157 PRK08116 hypothetical protein; 97.5 0.0005 1.1E-08 72.5 10.1 104 211-329 115-221 (268)
158 CHL00095 clpC Clp protease ATP 97.5 0.00098 2.1E-08 82.2 13.8 154 183-357 179-352 (821)
159 TIGR02639 ClpA ATP-dependent C 97.5 0.00083 1.8E-08 81.8 12.9 156 183-359 182-358 (731)
160 PRK07399 DNA polymerase III su 97.5 0.0045 9.7E-08 66.8 17.0 195 183-391 4-220 (314)
161 smart00382 AAA ATPases associa 97.4 0.0008 1.7E-08 63.7 9.4 88 211-302 3-91 (148)
162 PRK15386 type III secretion pr 97.3 0.00063 1.4E-08 74.3 8.5 140 752-931 48-187 (426)
163 PRK08769 DNA polymerase III su 97.3 0.0086 1.9E-07 64.4 16.9 96 288-393 112-209 (319)
164 TIGR03689 pup_AAA proteasome A 97.3 0.0044 9.4E-08 70.7 15.3 166 183-360 182-379 (512)
165 KOG0991 Replication factor C, 97.3 0.0026 5.7E-08 62.2 11.4 102 183-312 27-136 (333)
166 PRK08118 topology modulation p 97.3 0.00014 2.9E-09 70.9 2.8 34 212-245 3-37 (167)
167 KOG1859 Leucine-rich repeat pr 97.3 1.3E-05 2.9E-10 89.9 -4.9 83 592-683 181-264 (1096)
168 PRK06090 DNA polymerase III su 97.3 0.009 1.9E-07 64.2 16.4 165 191-392 11-201 (319)
169 COG3267 ExeA Type II secretory 97.3 0.019 4E-07 57.9 17.1 182 208-394 49-247 (269)
170 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.3E-09 86.0 3.0 131 544-685 121-262 (699)
171 PRK10536 hypothetical protein; 97.2 0.0062 1.3E-07 62.3 13.7 134 183-328 55-212 (262)
172 KOG4579 Leucine-rich repeat (L 97.2 2.5E-05 5.4E-10 69.7 -3.0 81 620-702 47-128 (177)
173 TIGR00763 lon ATP-dependent pr 97.2 0.012 2.7E-07 72.2 19.0 165 183-359 320-505 (775)
174 COG0466 Lon ATP-dependent Lon 97.2 0.0027 5.9E-08 72.6 11.7 166 182-359 322-508 (782)
175 PF04665 Pox_A32: Poxvirus A32 97.2 0.0013 2.9E-08 66.8 8.5 37 210-248 13-49 (241)
176 PRK10787 DNA-binding ATP-depen 97.2 0.0042 9.1E-08 75.4 14.2 166 182-359 321-506 (784)
177 PF13177 DNA_pol3_delta2: DNA 97.2 0.0064 1.4E-07 58.9 12.7 137 187-347 1-162 (162)
178 PRK10865 protein disaggregatio 97.2 0.0034 7.4E-08 77.4 13.4 155 183-359 178-354 (857)
179 PRK06871 DNA polymerase III su 97.2 0.02 4.2E-07 61.8 17.4 177 191-389 10-200 (325)
180 COG1373 Predicted ATPase (AAA+ 97.1 0.006 1.3E-07 68.3 14.1 147 212-391 39-191 (398)
181 PRK08181 transposase; Validate 97.1 0.0013 2.8E-08 69.0 8.1 101 211-329 107-209 (269)
182 PTZ00361 26 proteosome regulat 97.1 0.0018 3.8E-08 72.7 9.7 158 183-360 183-368 (438)
183 KOG2982 Uncharacterized conser 97.1 0.00072 1.6E-08 68.5 5.7 86 865-956 197-284 (418)
184 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0039 8.5E-08 77.2 13.4 155 183-358 173-348 (852)
185 TIGR00602 rad24 checkpoint pro 97.1 0.0026 5.5E-08 74.5 11.1 51 182-233 83-133 (637)
186 KOG4579 Leucine-rich repeat (L 97.1 0.00012 2.5E-09 65.5 0.1 90 567-668 52-141 (177)
187 PRK08058 DNA polymerase III su 97.1 0.013 2.8E-07 64.1 15.9 149 184-358 6-181 (329)
188 KOG3665 ZYG-1-like serine/thre 97.1 0.00053 1.1E-08 81.6 5.3 129 567-705 121-258 (699)
189 PRK10865 protein disaggregatio 97.1 0.0051 1.1E-07 75.8 13.9 138 183-328 568-720 (857)
190 PRK11034 clpA ATP-dependent Cl 97.1 0.0034 7.4E-08 75.5 11.8 154 184-358 187-361 (758)
191 KOG2004 Mitochondrial ATP-depe 97.1 0.0049 1.1E-07 70.2 12.0 107 182-300 410-516 (906)
192 PRK12377 putative replication 97.0 0.0012 2.6E-08 68.3 6.8 102 210-328 101-205 (248)
193 COG0542 clpA ATP-binding subun 97.0 0.018 4E-07 68.0 16.8 134 183-327 491-642 (786)
194 PF01695 IstB_IS21: IstB-like 97.0 0.00064 1.4E-08 66.8 4.2 101 210-329 47-150 (178)
195 PHA00729 NTP-binding motif con 97.0 0.0061 1.3E-07 61.3 11.2 25 209-233 16-40 (226)
196 PTZ00454 26S protease regulato 97.0 0.0053 1.2E-07 68.4 11.9 159 182-360 144-330 (398)
197 TIGR02639 ClpA ATP-dependent C 97.0 0.0086 1.9E-07 73.1 14.7 123 183-316 454-580 (731)
198 PRK06921 hypothetical protein; 97.0 0.0037 8.1E-08 65.8 9.8 99 210-328 117-224 (266)
199 PRK12608 transcription termina 97.0 0.0049 1.1E-07 66.7 10.7 103 191-299 119-230 (380)
200 PRK06526 transposase; Provisio 96.9 0.0017 3.6E-08 67.8 6.9 101 210-329 98-201 (254)
201 PRK09183 transposase/IS protei 96.9 0.0039 8.4E-08 65.5 9.3 101 211-329 103-206 (259)
202 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0032 7E-08 77.3 9.9 136 183-328 566-718 (852)
203 PRK08939 primosomal protein Dn 96.9 0.0045 9.7E-08 66.5 9.8 122 187-328 135-260 (306)
204 CHL00176 ftsH cell division pr 96.9 0.015 3.3E-07 68.8 15.0 177 183-384 183-386 (638)
205 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0043 9.3E-08 76.9 11.0 136 183-328 565-717 (852)
206 TIGR02640 gas_vesic_GvpN gas v 96.9 0.028 6E-07 59.4 15.6 110 212-329 23-161 (262)
207 PRK07952 DNA replication prote 96.9 0.0078 1.7E-07 62.1 10.8 103 210-328 99-204 (244)
208 PRK07993 DNA polymerase III su 96.8 0.044 9.5E-07 59.7 16.8 177 191-390 10-202 (334)
209 PRK04296 thymidine kinase; Pro 96.8 0.0032 7E-08 62.9 7.1 112 211-330 3-117 (190)
210 KOG1859 Leucine-rich repeat pr 96.8 0.0001 2.2E-09 83.1 -4.0 125 600-737 166-291 (1096)
211 PRK06964 DNA polymerase III su 96.7 0.03 6.5E-07 60.8 14.7 93 288-392 131-225 (342)
212 PRK07261 topology modulation p 96.7 0.0033 7.1E-08 61.6 6.8 66 212-300 2-68 (171)
213 TIGR02237 recomb_radB DNA repa 96.7 0.0056 1.2E-07 62.5 8.8 49 208-259 10-58 (209)
214 TIGR01241 FtsH_fam ATP-depende 96.7 0.023 4.9E-07 66.2 14.7 181 181-386 53-260 (495)
215 KOG2228 Origin recognition com 96.7 0.013 2.9E-07 60.9 11.0 172 183-359 24-219 (408)
216 PRK06835 DNA replication prote 96.7 0.0038 8.2E-08 67.6 7.2 102 211-328 184-288 (329)
217 PRK05541 adenylylsulfate kinas 96.7 0.0083 1.8E-07 59.3 9.2 36 209-246 6-41 (176)
218 PRK04132 replication factor C 96.6 0.045 9.8E-07 66.2 16.5 152 218-389 574-728 (846)
219 COG1484 DnaC DNA replication p 96.6 0.0031 6.7E-08 65.8 5.7 82 209-307 104-185 (254)
220 PF00910 RNA_helicase: RNA hel 96.6 0.0049 1.1E-07 55.0 6.2 21 213-233 1-21 (107)
221 PRK09361 radB DNA repair and r 96.6 0.011 2.4E-07 61.1 9.8 47 208-257 21-67 (225)
222 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0023 5.1E-08 68.8 4.7 51 183-233 51-101 (361)
223 PF10443 RNA12: RNA12 protein; 96.6 0.088 1.9E-06 57.7 16.5 212 188-411 1-298 (431)
224 KOG1514 Origin recognition com 96.6 0.072 1.6E-06 61.1 16.3 139 183-326 396-546 (767)
225 CHL00095 clpC Clp protease ATP 96.6 0.0084 1.8E-07 74.1 10.0 138 183-328 509-661 (821)
226 COG5238 RNA1 Ran GTPase-activa 96.5 0.00051 1.1E-08 68.6 -0.4 96 565-664 27-134 (388)
227 PTZ00494 tuzin-like protein; P 96.5 0.38 8.2E-06 52.6 20.6 170 178-359 366-544 (664)
228 COG0470 HolB ATPase involved i 96.5 0.013 2.8E-07 64.6 10.6 143 184-346 2-168 (325)
229 cd01133 F1-ATPase_beta F1 ATP 96.5 0.015 3.2E-07 60.6 9.9 88 210-299 69-173 (274)
230 TIGR02902 spore_lonB ATP-depen 96.5 0.016 3.4E-07 67.7 11.4 45 183-233 65-109 (531)
231 PF07728 AAA_5: AAA domain (dy 96.5 0.0011 2.3E-08 62.7 1.2 89 213-314 2-90 (139)
232 PRK08699 DNA polymerase III su 96.4 0.027 5.8E-07 61.2 11.8 71 288-358 112-184 (325)
233 PF02562 PhoH: PhoH-like prote 96.4 0.01 2.2E-07 59.0 7.9 131 187-329 4-156 (205)
234 cd01394 radB RadB. The archaea 96.4 0.011 2.3E-07 60.8 8.4 43 209-253 18-60 (218)
235 KOG0741 AAA+-type ATPase [Post 96.4 0.044 9.5E-07 60.4 12.9 149 207-382 535-704 (744)
236 PF13207 AAA_17: AAA domain; P 96.4 0.0024 5.2E-08 58.6 3.1 21 212-232 1-21 (121)
237 COG2812 DnaX DNA polymerase II 96.4 0.018 3.9E-07 65.3 10.4 189 183-387 16-215 (515)
238 KOG2123 Uncharacterized conser 96.3 0.00035 7.5E-09 70.1 -2.9 99 597-703 18-123 (388)
239 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.017 3.6E-07 60.2 9.5 91 208-299 17-125 (235)
240 cd01393 recA_like RecA is a b 96.3 0.023 5E-07 58.7 10.4 89 208-299 17-124 (226)
241 PF07693 KAP_NTPase: KAP famil 96.3 0.1 2.2E-06 57.4 16.1 166 190-358 3-262 (325)
242 PRK11889 flhF flagellar biosyn 96.3 0.042 9.1E-07 59.8 12.3 89 209-300 240-331 (436)
243 PF00158 Sigma54_activat: Sigm 96.3 0.0099 2.1E-07 57.8 6.9 130 185-328 1-143 (168)
244 PF13671 AAA_33: AAA domain; P 96.3 0.012 2.6E-07 55.8 7.3 21 212-232 1-21 (143)
245 PRK13695 putative NTPase; Prov 96.2 0.0083 1.8E-07 59.1 6.2 22 212-233 2-23 (174)
246 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.035 7.7E-07 52.8 9.9 117 211-330 3-139 (159)
247 KOG1969 DNA replication checkp 96.2 0.015 3.3E-07 66.5 8.5 89 206-314 322-412 (877)
248 PRK11034 clpA ATP-dependent Cl 96.1 0.022 4.7E-07 68.8 10.1 122 184-316 459-584 (758)
249 PF00448 SRP54: SRP54-type pro 96.1 0.029 6.2E-07 56.1 9.4 57 210-268 1-58 (196)
250 cd03214 ABC_Iron-Siderophores_ 96.1 0.05 1.1E-06 53.9 11.0 119 210-332 25-161 (180)
251 PF14532 Sigma54_activ_2: Sigm 96.1 0.0045 9.8E-08 58.3 3.2 108 186-329 1-110 (138)
252 PRK12724 flagellar biosynthesi 96.1 0.031 6.8E-07 61.6 10.1 24 209-232 222-245 (432)
253 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.048 1E-06 51.7 10.2 105 210-333 26-131 (144)
254 COG2607 Predicted ATPase (AAA+ 96.1 0.033 7.1E-07 55.4 9.0 121 182-329 59-183 (287)
255 PRK06696 uridine kinase; Valid 96.1 0.0068 1.5E-07 62.4 4.7 42 188-232 3-44 (223)
256 PF13604 AAA_30: AAA domain; P 96.0 0.0096 2.1E-07 59.8 5.6 105 210-329 18-131 (196)
257 cd03228 ABCC_MRP_Like The MRP 96.0 0.039 8.4E-07 54.2 9.7 118 210-334 28-160 (171)
258 TIGR01243 CDC48 AAA family ATP 96.0 0.038 8.3E-07 67.7 11.8 179 183-386 178-381 (733)
259 cd03238 ABC_UvrA The excision 96.0 0.036 7.9E-07 54.3 9.1 122 210-343 21-161 (176)
260 TIGR02012 tigrfam_recA protein 96.0 0.026 5.5E-07 60.6 8.6 85 208-299 53-143 (321)
261 KOG0744 AAA+-type ATPase [Post 96.0 0.062 1.3E-06 55.7 10.7 80 210-299 177-260 (423)
262 TIGR03499 FlhF flagellar biosy 95.9 0.034 7.4E-07 59.3 9.4 88 209-298 193-281 (282)
263 COG1136 SalX ABC-type antimicr 95.9 0.079 1.7E-06 53.4 11.2 82 255-336 119-210 (226)
264 COG4608 AppF ABC-type oligopep 95.9 0.036 7.8E-07 56.8 8.9 125 210-337 39-178 (268)
265 cd00544 CobU Adenosylcobinamid 95.9 0.021 4.6E-07 55.5 7.0 149 213-387 2-167 (169)
266 COG2884 FtsE Predicted ATPase 95.9 0.099 2.1E-06 50.2 11.0 124 210-336 28-204 (223)
267 cd00983 recA RecA is a bacter 95.9 0.029 6.4E-07 60.1 8.7 85 208-299 53-143 (325)
268 PRK05800 cobU adenosylcobinami 95.9 0.017 3.7E-07 56.3 6.2 152 212-389 3-169 (170)
269 COG1222 RPT1 ATP-dependent 26S 95.9 0.085 1.8E-06 55.8 11.4 189 183-397 151-372 (406)
270 PF08423 Rad51: Rad51; InterP 95.9 0.044 9.5E-07 57.4 9.7 89 209-298 37-142 (256)
271 COG1875 NYN ribonuclease and A 95.8 0.036 7.7E-07 58.6 8.6 134 185-327 226-386 (436)
272 cd03222 ABC_RNaseL_inhibitor T 95.8 0.055 1.2E-06 53.0 9.7 104 210-334 25-137 (177)
273 PF07724 AAA_2: AAA domain (Cd 95.8 0.0091 2E-07 58.2 4.1 91 210-315 3-105 (171)
274 cd03247 ABCC_cytochrome_bd The 95.8 0.04 8.7E-07 54.5 8.8 118 210-333 28-161 (178)
275 PLN03187 meiotic recombination 95.8 0.034 7.3E-07 60.4 8.7 60 208-268 124-187 (344)
276 PRK04301 radA DNA repair and r 95.8 0.06 1.3E-06 58.7 10.9 57 209-266 101-161 (317)
277 KOG0735 AAA+-type ATPase [Post 95.8 0.058 1.2E-06 61.7 10.6 155 209-385 430-608 (952)
278 PRK09354 recA recombinase A; P 95.8 0.036 7.8E-07 60.0 8.8 85 208-299 58-148 (349)
279 cd03216 ABC_Carb_Monos_I This 95.8 0.034 7.3E-07 54.0 8.0 116 210-332 26-145 (163)
280 PRK15455 PrkA family serine pr 95.8 0.0064 1.4E-07 68.8 3.2 49 184-232 77-125 (644)
281 TIGR02238 recomb_DMC1 meiotic 95.8 0.049 1.1E-06 58.7 9.8 59 208-267 94-156 (313)
282 KOG2739 Leucine-rich acidic nu 95.7 0.0056 1.2E-07 61.7 2.2 60 624-685 63-128 (260)
283 cd01120 RecA-like_NTPases RecA 95.7 0.055 1.2E-06 52.5 9.3 40 212-253 1-40 (165)
284 PRK06067 flagellar accessory p 95.7 0.047 1E-06 56.8 9.2 87 208-299 23-130 (234)
285 KOG2739 Leucine-rich acidic nu 95.7 0.0042 9.1E-08 62.5 1.1 83 624-709 41-128 (260)
286 TIGR01817 nifA Nif-specific re 95.7 0.064 1.4E-06 63.3 11.2 136 181-329 194-341 (534)
287 cd03223 ABCD_peroxisomal_ALDP 95.6 0.093 2E-06 51.1 10.5 117 210-333 27-152 (166)
288 COG0468 RecA RecA/RadA recombi 95.6 0.054 1.2E-06 56.7 9.0 90 207-299 57-151 (279)
289 PRK11608 pspF phage shock prot 95.6 0.03 6.5E-07 61.2 7.6 134 183-328 6-150 (326)
290 COG1618 Predicted nucleotide k 95.6 0.012 2.6E-07 54.6 3.7 24 210-233 5-28 (179)
291 PF00560 LRR_1: Leucine Rich R 95.6 0.0049 1.1E-07 36.9 0.8 19 628-646 2-20 (22)
292 PF00485 PRK: Phosphoribulokin 95.6 0.059 1.3E-06 54.2 9.1 82 212-295 1-89 (194)
293 PRK05703 flhF flagellar biosyn 95.6 0.11 2.5E-06 58.6 12.3 89 210-300 221-310 (424)
294 KOG1947 Leucine rich repeat pr 95.6 0.0019 4.1E-08 75.7 -2.0 244 625-938 187-444 (482)
295 PLN03186 DNA repair protein RA 95.6 0.073 1.6E-06 58.0 10.3 59 208-267 121-183 (342)
296 PRK12727 flagellar biosynthesi 95.6 0.062 1.4E-06 60.9 9.9 89 209-300 349-439 (559)
297 PRK14722 flhF flagellar biosyn 95.6 0.045 9.7E-07 60.0 8.6 90 210-301 137-227 (374)
298 PRK10867 signal recognition pa 95.5 0.088 1.9E-06 59.1 11.0 24 209-232 99-122 (433)
299 KOG1644 U2-associated snRNP A' 95.5 0.016 3.4E-07 56.0 4.2 36 623-658 110-149 (233)
300 PRK00771 signal recognition pa 95.5 0.17 3.7E-06 57.0 13.1 57 209-267 94-151 (437)
301 KOG2035 Replication factor C, 95.5 0.074 1.6E-06 54.0 9.0 180 185-387 15-223 (351)
302 PRK14974 cell division protein 95.5 0.12 2.6E-06 56.0 11.5 89 209-301 139-234 (336)
303 TIGR00959 ffh signal recogniti 95.4 0.11 2.4E-06 58.3 11.4 25 209-233 98-122 (428)
304 cd03230 ABC_DR_subfamily_A Thi 95.4 0.11 2.3E-06 51.1 10.2 118 210-333 26-159 (173)
305 PRK15429 formate hydrogenlyase 95.4 0.05 1.1E-06 66.2 9.5 135 183-329 376-521 (686)
306 TIGR02239 recomb_RAD51 DNA rep 95.4 0.089 1.9E-06 56.9 10.3 59 208-267 94-156 (316)
307 PRK12723 flagellar biosynthesi 95.4 0.099 2.1E-06 57.9 10.7 90 209-301 173-266 (388)
308 cd03115 SRP The signal recogni 95.4 0.064 1.4E-06 52.8 8.4 22 212-233 2-23 (173)
309 cd01131 PilT Pilus retraction 95.3 0.035 7.5E-07 55.9 6.4 111 211-333 2-113 (198)
310 TIGR01243 CDC48 AAA family ATP 95.3 0.19 4.1E-06 61.7 14.0 179 183-386 453-657 (733)
311 cd02025 PanK Pantothenate kina 95.3 0.06 1.3E-06 55.1 8.2 21 212-232 1-21 (220)
312 TIGR02236 recomb_radA DNA repa 95.3 0.07 1.5E-06 58.1 9.2 57 209-266 94-154 (310)
313 cd03246 ABCC_Protease_Secretio 95.3 0.065 1.4E-06 52.7 8.2 117 210-333 28-160 (173)
314 PRK07132 DNA polymerase III su 95.3 0.55 1.2E-05 50.2 15.6 153 209-391 17-184 (299)
315 PRK09270 nucleoside triphospha 95.3 0.068 1.5E-06 55.3 8.6 26 207-232 30-55 (229)
316 COG1102 Cmk Cytidylate kinase 95.3 0.037 8.1E-07 51.5 5.7 44 212-268 2-45 (179)
317 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.045 9.7E-07 55.7 6.9 121 210-335 29-160 (213)
318 KOG2123 Uncharacterized conser 95.2 0.0014 3E-08 65.9 -3.9 100 566-679 17-123 (388)
319 PRK00889 adenylylsulfate kinas 95.2 0.12 2.6E-06 51.0 9.7 24 210-233 4-27 (175)
320 PF12775 AAA_7: P-loop contain 95.2 0.024 5.1E-07 60.0 4.9 96 192-307 22-118 (272)
321 PRK07667 uridine kinase; Provi 95.2 0.023 5E-07 56.9 4.6 37 192-232 3-39 (193)
322 PF00006 ATP-synt_ab: ATP synt 95.2 0.08 1.7E-06 53.5 8.4 95 195-298 5-114 (215)
323 cd01125 repA Hexameric Replica 95.2 0.17 3.6E-06 52.8 11.2 143 212-354 3-199 (239)
324 TIGR00554 panK_bact pantothena 95.1 0.089 1.9E-06 55.8 8.9 80 208-289 60-141 (290)
325 KOG1532 GTPase XAB1, interacts 95.1 0.1 2.2E-06 52.8 8.6 91 207-298 16-124 (366)
326 PHA02244 ATPase-like protein 95.1 0.075 1.6E-06 57.5 8.3 22 212-233 121-142 (383)
327 PF13238 AAA_18: AAA domain; P 95.0 0.017 3.7E-07 53.5 2.9 21 213-233 1-21 (129)
328 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.17 3.7E-06 52.6 10.5 48 209-260 20-67 (237)
329 TIGR01650 PD_CobS cobaltochela 95.0 0.33 7.1E-06 52.0 12.6 60 185-257 47-106 (327)
330 PRK08533 flagellar accessory p 95.0 0.14 3.1E-06 52.8 9.7 48 210-261 24-71 (230)
331 CHL00195 ycf46 Ycf46; Provisio 95.0 0.21 4.6E-06 57.2 12.0 159 183-361 228-407 (489)
332 PRK05439 pantothenate kinase; 94.9 0.13 2.9E-06 54.9 9.6 80 207-290 83-166 (311)
333 KOG1051 Chaperone HSP104 and r 94.9 0.17 3.7E-06 61.0 11.4 122 184-316 563-687 (898)
334 COG1419 FlhF Flagellar GTP-bin 94.9 0.092 2E-06 57.1 8.4 89 209-300 202-292 (407)
335 PRK05022 anaerobic nitric oxid 94.9 0.076 1.6E-06 62.1 8.5 136 182-329 186-332 (509)
336 COG0542 clpA ATP-binding subun 94.9 0.12 2.6E-06 61.4 10.0 154 184-358 171-345 (786)
337 TIGR00064 ftsY signal recognit 94.9 0.16 3.4E-06 53.8 10.1 89 209-300 71-165 (272)
338 TIGR02974 phageshock_pspF psp 94.9 0.068 1.5E-06 58.3 7.6 132 185-328 1-143 (329)
339 TIGR00708 cobA cob(I)alamin ad 94.9 0.28 6E-06 47.4 10.7 116 211-330 6-141 (173)
340 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.13 2.7E-06 52.8 8.9 122 211-332 31-202 (254)
341 PTZ00301 uridine kinase; Provi 94.9 0.032 6.9E-07 56.4 4.6 23 210-232 3-25 (210)
342 PTZ00035 Rad51 protein; Provis 94.9 0.18 3.9E-06 55.1 10.7 59 208-267 116-178 (337)
343 cd03229 ABC_Class3 This class 94.9 0.1 2.2E-06 51.6 8.1 121 210-333 26-165 (178)
344 cd01121 Sms Sms (bacterial rad 94.9 0.1 2.3E-06 57.6 9.0 82 209-298 81-167 (372)
345 cd02019 NK Nucleoside/nucleoti 94.8 0.019 4.2E-07 46.4 2.4 21 212-232 1-21 (69)
346 COG0572 Udk Uridine kinase [Nu 94.8 0.056 1.2E-06 53.9 6.0 25 208-232 6-30 (218)
347 cd03235 ABC_Metallic_Cations A 94.8 0.24 5.1E-06 50.7 11.0 23 210-232 25-47 (213)
348 COG1126 GlnQ ABC-type polar am 94.8 0.39 8.5E-06 47.4 11.5 123 210-335 28-202 (240)
349 KOG0730 AAA+-type ATPase [Post 94.8 0.4 8.7E-06 55.0 13.2 54 180-233 431-491 (693)
350 PRK12726 flagellar biosynthesi 94.8 0.15 3.2E-06 55.5 9.4 91 208-300 204-296 (407)
351 cd03217 ABC_FeS_Assembly ABC-t 94.8 0.12 2.6E-06 52.2 8.5 119 210-333 26-168 (200)
352 KOG1947 Leucine rich repeat pr 94.8 0.005 1.1E-07 72.1 -1.8 37 647-683 186-224 (482)
353 PRK13539 cytochrome c biogenes 94.8 0.2 4.4E-06 50.9 10.2 63 282-347 138-202 (207)
354 cd01122 GP4d_helicase GP4d_hel 94.7 0.25 5.5E-06 52.6 11.4 53 210-265 30-82 (271)
355 PF01583 APS_kinase: Adenylyls 94.7 0.044 9.6E-07 51.9 4.8 36 210-247 2-37 (156)
356 TIGR00235 udk uridine kinase. 94.7 0.026 5.6E-07 57.4 3.5 25 208-232 4-28 (207)
357 COG0563 Adk Adenylate kinase a 94.7 0.05 1.1E-06 53.3 5.3 22 212-233 2-23 (178)
358 PRK06002 fliI flagellum-specif 94.7 0.14 3.1E-06 57.2 9.4 87 210-299 165-264 (450)
359 PRK08233 hypothetical protein; 94.7 0.025 5.5E-07 56.2 3.3 23 210-232 3-25 (182)
360 PF03215 Rad17: Rad17 cell cyc 94.7 0.17 3.6E-06 58.4 10.2 60 183-247 19-78 (519)
361 PRK05480 uridine/cytidine kina 94.7 0.027 5.8E-07 57.4 3.5 24 209-232 5-28 (209)
362 PF08433 KTI12: Chromatin asso 94.6 0.068 1.5E-06 56.3 6.5 23 211-233 2-24 (270)
363 cd03263 ABC_subfamily_A The AB 94.6 0.32 6.9E-06 50.0 11.5 53 282-334 144-197 (220)
364 PLN00020 ribulose bisphosphate 94.6 0.059 1.3E-06 57.9 5.9 26 208-233 146-171 (413)
365 PTZ00088 adenylate kinase 1; P 94.6 0.033 7.2E-07 57.1 4.0 21 212-232 8-28 (229)
366 cd01135 V_A-ATPase_B V/A-type 94.6 0.18 3.9E-06 52.5 9.3 89 211-299 70-176 (276)
367 PRK13531 regulatory ATPase Rav 94.6 0.042 9.2E-07 61.6 5.0 152 184-358 21-193 (498)
368 KOG1644 U2-associated snRNP A' 94.6 0.04 8.6E-07 53.3 4.0 92 784-877 57-150 (233)
369 cd02027 APSK Adenosine 5'-phos 94.6 0.088 1.9E-06 50.2 6.6 21 212-232 1-21 (149)
370 PRK06547 hypothetical protein; 94.5 0.047 1E-06 53.3 4.6 26 208-233 13-38 (172)
371 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.11 2.3E-06 50.2 7.2 116 211-334 26-145 (157)
372 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.43 9.4E-06 48.4 11.9 52 282-333 136-188 (207)
373 cd03244 ABCC_MRP_domain2 Domai 94.5 0.32 7E-06 50.0 11.1 23 210-232 30-52 (221)
374 TIGR00150 HI0065_YjeE ATPase, 94.5 0.048 1E-06 50.2 4.2 40 190-233 6-45 (133)
375 TIGR03740 galliderm_ABC gallid 94.4 0.32 6.9E-06 50.1 10.8 52 282-333 135-188 (223)
376 PRK14721 flhF flagellar biosyn 94.4 0.21 4.7E-06 55.7 9.9 88 209-298 190-278 (420)
377 cd03245 ABCC_bacteriocin_expor 94.4 0.31 6.7E-06 50.1 10.6 23 210-232 30-52 (220)
378 cd03215 ABC_Carb_Monos_II This 94.3 0.24 5.1E-06 49.2 9.4 52 282-333 115-168 (182)
379 TIGR03498 FliI_clade3 flagella 94.3 0.18 3.9E-06 56.3 9.3 87 210-299 140-240 (418)
380 PRK03839 putative kinase; Prov 94.3 0.03 6.4E-07 55.6 2.9 22 212-233 2-23 (180)
381 PRK04328 hypothetical protein; 94.3 0.16 3.4E-06 53.2 8.4 42 209-252 22-63 (249)
382 PRK06762 hypothetical protein; 94.3 0.033 7.2E-07 54.4 3.1 23 210-232 2-24 (166)
383 PRK08972 fliI flagellum-specif 94.3 0.18 3.9E-06 56.1 9.0 86 210-299 162-262 (444)
384 PRK11248 tauB taurine transpor 94.3 0.32 7E-06 51.2 10.7 23 210-232 27-49 (255)
385 cd03213 ABCG_EPDR ABCG transpo 94.3 0.31 6.7E-06 48.9 10.1 118 210-330 35-172 (194)
386 cd03264 ABC_drug_resistance_li 94.2 0.16 3.4E-06 51.8 8.1 21 212-232 27-47 (211)
387 PRK12597 F0F1 ATP synthase sub 94.2 0.19 4.1E-06 56.7 9.1 89 210-299 143-247 (461)
388 PRK09280 F0F1 ATP synthase sub 94.2 0.22 4.7E-06 56.1 9.4 89 210-299 144-248 (463)
389 PRK00625 shikimate kinase; Pro 94.1 0.033 7.2E-07 54.4 2.7 21 212-232 2-22 (173)
390 cd03282 ABC_MSH4_euk MutS4 hom 94.1 0.1 2.2E-06 52.6 6.3 121 210-337 29-159 (204)
391 COG2019 AdkA Archaeal adenylat 94.1 0.044 9.5E-07 51.3 3.2 23 210-232 4-26 (189)
392 TIGR01425 SRP54_euk signal rec 94.1 0.38 8.2E-06 53.8 11.1 25 209-233 99-123 (429)
393 TIGR03522 GldA_ABC_ATP gliding 94.1 0.43 9.2E-06 51.7 11.5 52 282-333 144-196 (301)
394 PRK05973 replicative DNA helic 94.1 0.24 5.2E-06 50.8 8.9 48 209-260 63-110 (237)
395 PF03308 ArgK: ArgK protein; 94.1 0.1 2.3E-06 53.2 6.1 64 191-258 14-77 (266)
396 cd03251 ABCC_MsbA MsbA is an e 94.1 0.52 1.1E-05 48.9 11.8 60 282-343 149-209 (234)
397 PRK07594 type III secretion sy 94.1 0.23 5E-06 55.5 9.4 86 210-299 155-255 (433)
398 PRK05986 cob(I)alamin adenolsy 94.1 0.33 7.2E-06 47.6 9.3 119 210-330 22-159 (191)
399 PRK04040 adenylate kinase; Pro 94.1 0.04 8.8E-07 54.7 3.2 22 211-232 3-24 (188)
400 cd02028 UMPK_like Uridine mono 94.1 0.097 2.1E-06 51.7 5.8 22 212-233 1-22 (179)
401 TIGR03881 KaiC_arch_4 KaiC dom 94.0 0.21 4.6E-06 51.7 8.6 41 209-251 19-59 (229)
402 PRK08927 fliI flagellum-specif 94.0 0.29 6.3E-06 54.8 10.0 86 210-299 158-258 (442)
403 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.18 3.9E-06 53.1 8.1 41 209-251 35-75 (259)
404 COG2842 Uncharacterized ATPase 94.0 1 2.2E-05 46.9 13.0 96 210-313 94-189 (297)
405 PRK03846 adenylylsulfate kinas 94.0 0.13 2.9E-06 51.7 6.8 25 208-232 22-46 (198)
406 COG5635 Predicted NTPase (NACH 94.0 0.083 1.8E-06 65.5 6.3 137 210-351 222-370 (824)
407 COG0396 sufC Cysteine desulfur 93.9 0.6 1.3E-05 46.6 10.8 63 279-341 152-216 (251)
408 PF07726 AAA_3: ATPase family 93.9 0.049 1.1E-06 49.2 3.1 27 213-241 2-28 (131)
409 cd03232 ABC_PDR_domain2 The pl 93.9 0.3 6.5E-06 48.9 9.2 23 210-232 33-55 (192)
410 TIGR01360 aden_kin_iso1 adenyl 93.9 0.044 9.6E-07 54.7 3.2 24 209-232 2-25 (188)
411 PRK09544 znuC high-affinity zi 93.9 0.35 7.5E-06 50.8 10.0 23 210-232 30-52 (251)
412 TIGR00390 hslU ATP-dependent p 93.9 0.15 3.2E-06 56.2 7.2 81 183-265 12-104 (441)
413 cd01136 ATPase_flagellum-secre 93.9 0.32 6.9E-06 52.4 9.7 86 210-299 69-169 (326)
414 TIGR03574 selen_PSTK L-seryl-t 93.9 0.28 6E-06 51.5 9.2 22 212-233 1-22 (249)
415 TIGR02858 spore_III_AA stage I 93.9 0.32 6.9E-06 51.2 9.5 128 191-333 97-233 (270)
416 PRK12678 transcription termina 93.8 0.084 1.8E-06 59.9 5.4 97 194-299 405-513 (672)
417 COG1703 ArgK Putative periplas 93.8 0.085 1.8E-06 54.5 4.9 67 193-263 38-104 (323)
418 PRK13543 cytochrome c biogenes 93.8 0.5 1.1E-05 48.3 10.7 24 210-233 37-60 (214)
419 cd03253 ABCC_ATM1_transporter 93.7 0.45 9.8E-06 49.5 10.5 61 281-343 147-208 (236)
420 PRK09580 sufC cysteine desulfu 93.7 0.46 1E-05 49.8 10.7 24 210-233 27-50 (248)
421 COG1428 Deoxynucleoside kinase 93.7 0.045 9.7E-07 53.7 2.6 24 210-233 4-27 (216)
422 PRK06995 flhF flagellar biosyn 93.7 0.29 6.2E-06 55.7 9.4 88 210-299 256-344 (484)
423 PTZ00185 ATPase alpha subunit; 93.7 0.4 8.6E-06 54.0 10.2 90 210-299 189-299 (574)
424 PRK14723 flhF flagellar biosyn 93.7 0.3 6.5E-06 58.4 9.8 87 210-299 185-273 (767)
425 PF12061 DUF3542: Protein of u 93.7 0.15 3.3E-06 52.4 6.3 76 5-84 297-373 (402)
426 PRK10463 hydrogenase nickel in 93.7 0.29 6.3E-06 51.5 8.7 88 207-300 101-195 (290)
427 PRK08149 ATP synthase SpaL; Va 93.7 0.34 7.3E-06 54.2 9.7 86 210-299 151-251 (428)
428 PF06745 KaiC: KaiC; InterPro 93.6 0.12 2.7E-06 53.3 6.1 43 209-252 18-60 (226)
429 PF00154 RecA: recA bacterial 93.6 0.13 2.8E-06 55.1 6.2 85 208-299 51-141 (322)
430 PRK13647 cbiO cobalt transport 93.6 0.45 9.8E-06 50.7 10.5 53 281-333 148-202 (274)
431 COG1066 Sms Predicted ATP-depe 93.6 0.2 4.4E-06 54.1 7.5 82 209-299 92-178 (456)
432 TIGR03771 anch_rpt_ABC anchore 93.6 0.5 1.1E-05 48.6 10.4 52 281-332 123-176 (223)
433 PRK05922 type III secretion sy 93.6 0.4 8.6E-06 53.7 10.1 85 211-299 158-257 (434)
434 PRK10733 hflB ATP-dependent me 93.5 0.34 7.4E-06 58.1 10.3 157 184-360 153-336 (644)
435 smart00534 MUTSac ATPase domai 93.5 0.09 2E-06 52.3 4.6 119 212-336 1-129 (185)
436 cd03240 ABC_Rad50 The catalyti 93.5 0.35 7.5E-06 48.9 8.9 60 282-343 132-195 (204)
437 PRK09099 type III secretion sy 93.5 0.33 7.2E-06 54.6 9.4 88 209-299 162-263 (441)
438 KOG0734 AAA+-type ATPase conta 93.5 0.26 5.7E-06 54.7 8.2 52 183-234 304-361 (752)
439 COG1120 FepC ABC-type cobalami 93.5 0.28 6E-06 50.7 8.0 60 276-335 143-205 (258)
440 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.09 2E-06 56.3 4.7 51 182-232 60-110 (358)
441 COG0467 RAD55 RecA-superfamily 93.5 0.088 1.9E-06 55.7 4.7 42 208-251 21-62 (260)
442 TIGR01359 UMP_CMP_kin_fam UMP- 93.5 0.046 9.9E-07 54.4 2.3 21 212-232 1-21 (183)
443 cd03233 ABC_PDR_domain1 The pl 93.4 0.57 1.2E-05 47.3 10.3 24 210-233 33-56 (202)
444 TIGR03305 alt_F1F0_F1_bet alte 93.4 0.28 6.2E-06 55.0 8.6 89 210-299 138-242 (449)
445 COG4088 Predicted nucleotide k 93.4 0.26 5.7E-06 47.9 7.1 22 211-232 2-23 (261)
446 PRK06731 flhF flagellar biosyn 93.4 0.58 1.3E-05 49.2 10.5 90 210-301 75-166 (270)
447 TIGR03575 selen_PSTK_euk L-ser 93.4 0.91 2E-05 49.3 12.2 21 213-233 2-22 (340)
448 PF03205 MobB: Molybdopterin g 93.4 0.11 2.5E-06 48.7 4.7 39 211-250 1-39 (140)
449 PF03969 AFG1_ATPase: AFG1-lik 93.4 0.12 2.6E-06 56.8 5.7 105 209-332 61-170 (362)
450 PF13481 AAA_25: AAA domain; P 93.4 0.37 8E-06 48.3 8.9 42 211-252 33-82 (193)
451 cd01132 F1_ATPase_alpha F1 ATP 93.4 0.19 4.2E-06 52.3 6.8 86 210-299 69-171 (274)
452 TIGR02322 phosphon_PhnN phosph 93.3 0.059 1.3E-06 53.4 2.9 23 211-233 2-24 (179)
453 cd02023 UMPK Uridine monophosp 93.3 0.049 1.1E-06 54.9 2.4 21 212-232 1-21 (198)
454 PRK10751 molybdopterin-guanine 93.3 0.081 1.8E-06 51.2 3.7 25 209-233 5-29 (173)
455 PRK15453 phosphoribulokinase; 93.3 0.41 9E-06 49.9 9.0 78 209-288 4-89 (290)
456 PRK05201 hslU ATP-dependent pr 93.3 0.17 3.6E-06 55.8 6.4 51 183-233 15-73 (443)
457 PRK10820 DNA-binding transcrip 93.3 0.18 3.9E-06 59.0 7.3 135 183-329 204-349 (520)
458 TIGR03496 FliI_clade1 flagella 93.3 0.36 7.8E-06 54.0 9.2 85 210-298 137-236 (411)
459 cd02024 NRK1 Nicotinamide ribo 93.3 0.052 1.1E-06 53.6 2.3 21 212-232 1-21 (187)
460 PRK05917 DNA polymerase III su 93.2 0.93 2E-05 47.9 11.7 131 191-346 5-154 (290)
461 PRK00131 aroK shikimate kinase 93.2 0.063 1.4E-06 52.8 2.9 23 210-232 4-26 (175)
462 PRK06936 type III secretion sy 93.2 0.47 1E-05 53.1 9.8 86 210-299 162-262 (439)
463 PRK11823 DNA repair protein Ra 93.1 0.51 1.1E-05 53.8 10.4 83 209-299 79-166 (446)
464 PRK10416 signal recognition pa 93.1 0.33 7.2E-06 52.5 8.4 25 209-233 113-137 (318)
465 TIGR03411 urea_trans_UrtD urea 93.1 0.76 1.6E-05 48.0 11.0 23 210-232 28-50 (242)
466 PRK10875 recD exonuclease V su 93.1 0.5 1.1E-05 55.9 10.4 114 210-328 167-301 (615)
467 cd02021 GntK Gluconate kinase 93.1 0.06 1.3E-06 51.5 2.4 21 212-232 1-21 (150)
468 TIGR01040 V-ATPase_V1_B V-type 93.1 0.39 8.5E-06 53.7 9.0 90 210-299 141-257 (466)
469 PF10236 DAP3: Mitochondrial r 93.1 0.48 1E-05 51.2 9.6 48 340-388 258-305 (309)
470 PRK13949 shikimate kinase; Pro 93.1 0.064 1.4E-06 52.3 2.6 21 212-232 3-23 (169)
471 PRK06793 fliI flagellum-specif 93.1 0.23 4.9E-06 55.6 7.2 88 210-300 156-257 (432)
472 COG3640 CooC CO dehydrogenase 93.1 0.15 3.2E-06 50.9 5.0 43 212-255 2-44 (255)
473 PRK06217 hypothetical protein; 93.0 0.064 1.4E-06 53.3 2.6 22 212-233 3-24 (183)
474 KOG0733 Nuclear AAA ATPase (VC 93.0 1.6 3.4E-05 49.7 13.4 98 183-300 190-293 (802)
475 PRK05688 fliI flagellum-specif 93.0 0.5 1.1E-05 53.1 9.7 86 210-299 168-268 (451)
476 COG0464 SpoVK ATPases of the A 93.0 1.2 2.5E-05 52.3 13.5 134 208-361 274-425 (494)
477 TIGR00416 sms DNA repair prote 93.0 0.53 1.1E-05 53.8 10.3 41 209-251 93-133 (454)
478 cd03250 ABCC_MRP_domain1 Domai 93.0 1.2 2.5E-05 45.1 11.9 55 280-334 136-193 (204)
479 PF00560 LRR_1: Leucine Rich R 93.0 0.05 1.1E-06 32.6 1.1 21 650-671 1-21 (22)
480 TIGR02655 circ_KaiC circadian 93.0 0.58 1.3E-05 54.3 10.7 42 208-251 261-302 (484)
481 PRK14269 phosphate ABC transpo 93.0 0.81 1.7E-05 47.9 11.0 22 211-232 29-50 (246)
482 cd00227 CPT Chloramphenicol (C 92.9 0.07 1.5E-06 52.6 2.7 22 211-232 3-24 (175)
483 PRK13545 tagH teichoic acids e 92.9 0.98 2.1E-05 51.8 12.0 122 210-334 50-208 (549)
484 TIGR00041 DTMP_kinase thymidyl 92.9 0.62 1.3E-05 46.8 9.6 23 211-233 4-26 (195)
485 cd03236 ABC_RNaseL_inhibitor_d 92.8 0.72 1.6E-05 48.4 10.3 23 210-232 26-48 (255)
486 COG4618 ArpD ABC-type protease 92.8 0.33 7.2E-06 53.9 7.8 22 211-232 363-384 (580)
487 PF03266 NTPase_1: NTPase; In 92.8 0.072 1.6E-06 51.7 2.6 21 213-233 2-22 (168)
488 PF13245 AAA_19: Part of AAA d 92.8 0.21 4.6E-06 41.1 5.0 23 210-232 10-33 (76)
489 cd03280 ABC_MutS2 MutS2 homolo 92.8 0.23 5E-06 50.1 6.4 22 210-231 28-49 (200)
490 TIGR03263 guanyl_kin guanylate 92.8 0.077 1.7E-06 52.6 2.9 22 211-232 2-23 (180)
491 cd02020 CMPK Cytidine monophos 92.8 0.066 1.4E-06 50.9 2.4 21 212-232 1-21 (147)
492 cd03254 ABCC_Glucan_exporter_l 92.8 0.93 2E-05 46.9 11.1 52 282-333 150-202 (229)
493 PRK13947 shikimate kinase; Pro 92.8 0.073 1.6E-06 52.2 2.6 21 212-232 3-23 (171)
494 COG1124 DppF ABC-type dipeptid 92.8 0.12 2.6E-06 51.9 4.1 23 210-232 33-55 (252)
495 COG1936 Predicted nucleotide k 92.8 0.082 1.8E-06 50.1 2.7 20 212-231 2-21 (180)
496 TIGR01039 atpD ATP synthase, F 92.7 0.56 1.2E-05 52.7 9.6 89 210-299 143-247 (461)
497 cd02029 PRK_like Phosphoribulo 92.7 0.27 5.8E-06 50.9 6.5 77 212-290 1-85 (277)
498 cd04159 Arl10_like Arl10-like 92.7 0.42 9E-06 45.7 7.9 21 213-233 2-22 (159)
499 PRK09519 recA DNA recombinatio 92.7 0.41 9E-06 57.4 9.0 85 208-299 58-148 (790)
500 cd03300 ABC_PotA_N PotA is an 92.7 0.7 1.5E-05 47.9 9.9 24 210-233 26-49 (232)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-90 Score=822.53 Aligned_cols=774 Identities=25% Similarity=0.370 Sum_probs=583.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhhhchhhHHHH
Q 002071 3 DAIVSPLLEMLISFAAEEMQQQAQLVTGVKKEVDKLTSNLRAIEAVLDDAEERLVKDKAVRLWLEQLKYVSNDIEDVLDE 82 (973)
Q Consensus 3 ~~~v~~~~~~l~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~ 82 (973)
++.++..++|+.. .+.++.....+.++.+..|+++|..++++++||+.++.....+..|.+.+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777 888899999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhHHhhhhcccccccCCCCccCCcccccccchhhhhHHHHHHHHHHHHHHHHHHHhccccccee
Q 002071 83 WITARRKLQIEGGVDDNALVALHKKKKVCFCFPASCFGFKQEEFGFKQVFLRHDIAVKIKEINEKLDDIAIQKDRFKFLE 162 (973)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~ 162 (973)
|..+....+..+.... .....+.. |+ ..++++.+..+..+.+++..+.+....++...
T Consensus 78 ~~v~~~~~~~~~~l~~--------~~~~~~~~---c~-----------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~ 135 (889)
T KOG4658|consen 78 FLVEEIERKANDLLST--------RSVERQRL---CL-----------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKG 135 (889)
T ss_pred HHHHHHHHHHhHHhhh--------hHHHHHHH---hh-----------hhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc
Confidence 9988866543322000 00000100 11 12445556666666666666666655555333
Q ss_pred cCC--CC-CCCCCccccccccCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh-hhc
Q 002071 163 SGS--KS-SEIPRRVQSASFIDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE-VNR 238 (973)
Q Consensus 163 ~~~--~~-~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~ 238 (973)
.-. .. ......+++.|...... ||.+..++++++.|...+ ..+++|+||||+||||||++++|+.. ++.
T Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~ 208 (889)
T KOG4658|consen 136 VFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGN 208 (889)
T ss_pred ceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcc
Confidence 111 01 11111234444444445 999999999999998653 38999999999999999999999977 999
Q ss_pred cCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC
Q 002071 239 KFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLG--EFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG 316 (973)
Q Consensus 239 ~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~ 316 (973)
+||.++||+||+.++...++++|++.++....... ..++++..|.+.|++|||+|||||||++ .+|+.+..++|..
T Consensus 209 ~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~ 286 (889)
T KOG4658|consen 209 HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSR 286 (889)
T ss_pred cCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCc
Confidence 99999999999999999999999999987544333 3478899999999999999999999997 4699999999999
Q ss_pred CCCcEEEEEcCChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhh
Q 002071 317 LPESKILVTTRKESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSL 395 (973)
Q Consensus 317 ~~gs~iivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 395 (973)
.+||+|++|||++.||.. +++...+++++|+++|||+||++.+|.... ..++.++++|++|+++|+|+|||++++|+.
T Consensus 287 ~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ 365 (889)
T KOG4658|consen 287 ENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGL 365 (889)
T ss_pred cCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999999999999998 888889999999999999999999987643 334559999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHhhhhhh----hhhhcccchhhhhhhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCC
Q 002071 396 MRSKKTEEEWQRILSSELWK----IEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGV 471 (973)
Q Consensus 396 l~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~ 471 (973)
|+.|.+..+|+++.+...+. .++..+.++++|++||++||+++|.||+|||+||+||.|+++.|+.+|+||||+.+
T Consensus 366 ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~ 445 (889)
T KOG4658|consen 366 LACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP 445 (889)
T ss_pred hcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCc
Confidence 99999999999998865544 23345679999999999999999999999999999999999999999999999998
Q ss_pred C-CCCcHHHHHHHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHhc-----ccceeeecC-CCcchhhhcccC
Q 002071 472 E-QDEETNIIGEEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVSQ-----NECLSTVVS-GSEESAAINSLG 544 (973)
Q Consensus 472 ~-~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~~-----~e~~~~~~~-~~~~~~~~~~~~ 544 (973)
. .+.++++.|..|+.+|++++|++..+.. ++..+|+|||+||++|.++++ .++.+.... +....+.. ..+
T Consensus 446 ~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~-~~~ 522 (889)
T KOG4658|consen 446 LDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQV-KSW 522 (889)
T ss_pred cccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccc-cch
Confidence 4 4678999999999999999999976643 566789999999999999998 666554433 22222111 125
Q ss_pred cceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccC
Q 002071 545 EKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKR 624 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~ 624 (973)
..+|+++++.+.....+. ...+++|+||.+.++.. .+ ..+...+|..++.||||||++| ..+.++|.+|+.
T Consensus 523 ~~~rr~s~~~~~~~~~~~-~~~~~~L~tLll~~n~~---~l-~~is~~ff~~m~~LrVLDLs~~----~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG-SSENPKLRTLLLQRNSD---WL-LEISGEFFRSLPLLRVLDLSGN----SSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhhccC-CCCCCccceEEEeecch---hh-hhcCHHHHhhCcceEEEECCCC----CccCcCChHHhh
Confidence 789999999998764333 34566899999998741 01 4456777999999999999985 567789999999
Q ss_pred CCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCe
Q 002071 625 LVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVE 704 (973)
Q Consensus 625 L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 704 (973)
|.|||||+|+++.|..||..+.+|+.|++|++..+..+..+|..+..|++||+|.+.... .......++.+.+|++|..
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhh
Confidence 999999999999999999999999999999999998777777777779999999987653 1111223445555555554
Q ss_pred eeeCCCCCCCCCCccCcccccCCCccCceeeecc-CCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHH
Q 002071 705 FHVSGGGGVGGSNACRLESLKNLELLHVCGIRRL-GNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQL 783 (973)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l-~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 783 (973)
+.+...+ ...+..+..+..|........ +. .........+..+.+|+.|.+..+...... ...
T Consensus 673 ls~~~~s------~~~~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~--------~~~ 736 (889)
T KOG4658|consen 673 LSITISS------VLLLEDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIV--------IEW 736 (889)
T ss_pred heeecch------hHhHhhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhh--------ccc
Confidence 4443322 111111222222210000000 00 011122335667888888888877553210 000
Q ss_pred HhhcC---CCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCc-CCCCCCcCcccc
Q 002071 784 LEALQ---PPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQ-IPPLGKLSSLEK 842 (973)
Q Consensus 784 l~~l~---~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~ 842 (973)
.+... .++++..+.+.+|.... .+.|....++|+.|.+..|...++ +|....+..++.
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred ccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 00000 23456666666666655 677777888899999988876554 444555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-63 Score=627.15 Aligned_cols=685 Identities=20% Similarity=0.253 Sum_probs=458.1
Q ss_pred cCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe---Ccc-----
Q 002071 180 IDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV---SEA----- 251 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~----- 251 (973)
.+..++|||+..++++..+|... .+.+++|+|+||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988543 34689999999999999999999998 67889998888742 111
Q ss_pred ------cc-HHHHHHHHHHHhcCCC-CCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEE
Q 002071 252 ------FE-EFRIARAIVEALDVSS-SGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKIL 323 (973)
Q Consensus 252 ------~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ii 323 (973)
+. ...++++++.++.... ..... ...+++.+++||+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 1234444554443221 11111 14567788999999999999975 46888877666667899999
Q ss_pred EEcCChHHHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHH
Q 002071 324 VTTRKESVAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEE 403 (973)
Q Consensus 324 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 403 (973)
||||+..++..++...+|+++.|++++||+||+++||+...+ +..+.+++++|+++|+|+|||++++|+.|+.+ +.+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 999999999888888899999999999999999999976433 35688999999999999999999999999976 789
Q ss_pred HHHHHHhhhhhhhhhhcccchhhhhhhccCCch-HHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHHHHH
Q 002071 404 EWQRILSSELWKIEEIEKGVLTPLWLSYNDLPS-RVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNIIGE 482 (973)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~ 482 (973)
+|..++....... +..+.++|++||+.|++ ..|.||+++|+||.++.+ +.+..|++.+.+...
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~---------- 469 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN---------- 469 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch----------
Confidence 9999987754432 34689999999999987 599999999999988654 457888888765422
Q ss_pred HHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHhcccc-------eeeecCCCcchhhhcccCcceEEEEEEcc
Q 002071 483 EYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVSQNEC-------LSTVVSGSEESAAINSLGEKVCHLMLSIH 555 (973)
Q Consensus 483 ~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~r~lsl~~~ 555 (973)
.-++.|++++|++... ..++|||++|+||+.+++++. +.............+.....++++++...
T Consensus 470 ~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 2288999999998642 148999999999999987653 11111110011111223467888887765
Q ss_pred CCCC---CCccccCCCCceEEEeCCcccCC-CCCchhhHHHHHhhc-ccccEEEecccccccccccccCccccCCCCCcE
Q 002071 556 EGAP---FPISTCRIKRMRSLLIGGVVFDH-SSLDGNILEELFEEL-TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRY 630 (973)
Q Consensus 556 ~~~~---~~~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~ 630 (973)
.... ....+..+++|+.|.+..+..+. ......++.. |..+ ..||.|++.+ +.+..+|..+ .+.+|++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~-----~~l~~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDK-----YPLRCMPSNF-RPENLVK 615 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecC-----CCCCCCCCcC-CccCCcE
Confidence 5433 23456788889988886543211 0111112222 3333 3566666666 3344455544 3455556
Q ss_pred EEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCC
Q 002071 631 LNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGG 710 (973)
Q Consensus 631 L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~ 710 (973)
|++++|.+..+|..+..+++|++|+|++|..+..+|. +..+++|++|++++|..+..+|..++++++|+.|++..+...
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 6665555555555555555566666655554555553 555555555555555555555555555555555554433222
Q ss_pred CCCCCCCccCcccccCCCccCceeeeccCCCCChhh-------------hhhhhccCCCCCCcEEEEecCCCCCCCCCCc
Q 002071 711 GGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGE-------------AKRLELDKMKYLSCLRLWFDKEEEDGGRRKE 777 (973)
Q Consensus 711 ~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~-------------~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 777 (973)
..+ +..+ .+++|+.|.+.+|..+...+.... .+. ....+++|+.|.+..+....... .
T Consensus 695 ~~L----p~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP-~~~~l~~L~~L~l~~~~~~~l~~---~ 765 (1153)
T PLN03210 695 EIL----PTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP-SNLRLENLDELILCEMKSEKLWE---R 765 (1153)
T ss_pred Ccc----CCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccc-ccccccccccccccccchhhccc---c
Confidence 111 1111 344444444444433332221000 000 00123445555444321100000 0
Q ss_pred chHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCcc
Q 002071 778 EDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANE 857 (973)
Q Consensus 778 ~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 857 (973)
...........+++|+.|+|++|.....+|.++.++++|+.|+|++|...+.+|...++++|+.|+|++|..+..++.
T Consensus 766 -~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~- 843 (1153)
T PLN03210 766 -VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD- 843 (1153)
T ss_pred -ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-
Confidence 000000011235789999999987666689999999999999999998888888866899999999999987754432
Q ss_pred cccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCcc
Q 002071 858 FLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 858 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l~ 935 (973)
..++|+.|.+.+. .++.++. ....+++|+.|++++|++++.+|..+..+++|+.+++++|..+.
T Consensus 844 -------~~~nL~~L~Ls~n-~i~~iP~------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -------ISTNISDLNLSRT-GIEEVPW------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred -------cccccCEeECCCC-CCccChH------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 3568888888765 4554443 24478999999999999999999888889999999999998764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.5e-44 Score=386.21 Aligned_cols=279 Identities=37% Similarity=0.607 Sum_probs=226.8
Q ss_pred chhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 188 RVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.+++..+...+++.|+++++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 478999999999999999999999987789999999999999999999999999999988
Q ss_pred CCC---CCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhCC-CCeeeC
Q 002071 268 SSS---GLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMGS-TDIIPV 343 (973)
Q Consensus 268 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 343 (973)
... ...+.++....+.+.|+++++||||||||+.. .|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 743 44677889999999999999999999999864 788888888887789999999999998877655 679999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHHHHhhhhhhhhh---hc
Q 002071 344 QELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQRILSSELWKIEE---IE 420 (973)
Q Consensus 344 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 420 (973)
++|+++||++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|..+++...+...+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997655 223345577899999999999999999999997766778999988765555432 24
Q ss_pred ccchhhhhhhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCC
Q 002071 421 KGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQ 473 (973)
Q Consensus 421 ~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~ 473 (973)
..+..++.+||+.||++.|.||+|||+||+++.|+++.|+++|+++|||...+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 56889999999999999999999999999999999999999999999997653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.8e-24 Score=271.26 Aligned_cols=356 Identities=21% Similarity=0.240 Sum_probs=199.4
Q ss_pred ceEEEEEEccCCCC-CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccc------------
Q 002071 546 KVCHLMLSIHEGAP-FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTK------------ 612 (973)
Q Consensus 546 ~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~------------ 612 (973)
.++.+.+..+.... .+..+..+++|+.|+++++.+. +.++..++..+++||+|+|++|.+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-----~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-----GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-----CcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 45666665554332 3445556677777777666431 23344445566666666666654432
Q ss_pred -----cccc-ccCccccCCCCCcEEEecCCCcc-ccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCC
Q 002071 613 -----STIL-EIPTNVKRLVHLRYLNLSHQSIE-KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDS 685 (973)
Q Consensus 613 -----~~~~-~lp~~i~~L~~L~~L~Ls~~~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 685 (973)
+.+. .+|..++.+.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 1111 34555666666666666666644 5566666666666666666654445566666666666666666655
Q ss_pred CCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEe
Q 002071 686 LGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWF 765 (973)
Q Consensus 686 ~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 765 (973)
...+|..++++++|++|++..+.... ..+..+..+++|+.|.+.++...+.++. .+..+++|+.|++++
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPP-------SIFSLQKLISLDLSD 293 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCCeeeccCch-------hHhhccCcCEEECcC
Confidence 55566666666666666554433221 2244455566666666555544333332 344556666776666
Q ss_pred cCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCccccee
Q 002071 766 DKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLM 844 (973)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 844 (973)
|..... ++..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.....+|. ++.+++|+.|+
T Consensus 294 n~l~~~-----------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 294 NSLSGE-----------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred CeeccC-----------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 543211 223445567777777777777665677777777777777777776666665 67777777777
Q ss_pred ccccccceeeCccc----------------cccc---CCCCCcccEeecccccccccccccccCCCccCcccccceeeec
Q 002071 845 IWGLKSVKRVANEF----------------LGIE---IIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAII 905 (973)
Q Consensus 845 L~~~~~l~~~~~~~----------------~~~~---~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~ 905 (973)
|+++.--..++..+ .+.. ...+++|+.|.+.++.-....+ .....+|+|+.|+++
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP------SEFTKLPLVYFLDIS 436 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC------hhHhcCCCCCEEECc
Confidence 76543111111111 0000 0134555555555442111111 112356777777777
Q ss_pred cCccCCCCCCCCCCCCCcceEEEccCCCc
Q 002071 906 SCPKLKALPDHFHQMTTLKELYILGCAIP 934 (973)
Q Consensus 906 ~c~~l~~lp~~l~~l~~L~~L~i~~c~~l 934 (973)
+|.....+|..+..+++|+.|++++|...
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceee
Confidence 77544455655667778888888887654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.7e-23 Score=265.28 Aligned_cols=352 Identities=20% Similarity=0.262 Sum_probs=203.4
Q ss_pred cceEEEEEEccCCCC-CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 545 EKVCHLMLSIHEGAP-FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
..++++.+..+.... .+ ...+++|++|+++++.+. .. .+..+..+++|++|+|++|.+.+ .+|..++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~-----~~-~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~ 185 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLS-----GE-IPNDIGSFSSLKVLDLGGNVLVG----KIPNSLT 185 (968)
T ss_pred CCCCEEECcCCccccccC--ccccCCCCEEECcCCccc-----cc-CChHHhcCCCCCEEECccCcccc----cCChhhh
Confidence 445555555544321 11 134556666666665431 11 23336667777777777654332 4566677
Q ss_pred CCCCCcEEEecCCCcc-ccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccC
Q 002071 624 RLVHLRYLNLSHQSIE-KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTL 702 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 702 (973)
++.+|++|+|++|.+. .+|..++++.+|++|+|++|.....+|..++.+++|++|++++|.....+|..++++++|++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 7777777777777655 566667777777777777766445566666777777777777665555666666666677666
Q ss_pred CeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChh-----------------hhhhhhccCCCCCCcEEEEe
Q 002071 703 VEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVG-----------------EAKRLELDKMKYLSCLRLWF 765 (973)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~-----------------~~~~~~l~~~~~L~~L~L~~ 765 (973)
++..+.... ..+..+..+.+|+.|++.++...+..+... ......+..+++|+.|+++.
T Consensus 266 ~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 266 FLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred ECcCCeeec----cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 654433221 223444555555555555544333322200 00001233344445555544
Q ss_pred cCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCccccee
Q 002071 766 DKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLM 844 (973)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 844 (973)
|.... ..+..+..+++|+.|++++|.+.+.+|.++..+++|+.|++.+|.....+|. ++.+++|+.|+
T Consensus 342 n~l~~-----------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 342 NKFSG-----------EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCcC-----------cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 43221 1122344456666666666666554566666666677777776666555555 67778888888
Q ss_pred ccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcc
Q 002071 845 IWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLK 924 (973)
Q Consensus 845 L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~ 924 (973)
|.++.--..++.. ...+++|+.|++.++.-....+ .....+|+|+.|++++|.....+|..+ ..++|+
T Consensus 411 L~~n~l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 411 LQDNSFSGELPSE-----FTKLPLVYFLDISNNNLQGRIN------SRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred CcCCEeeeECChh-----HhcCCCCCEEECcCCcccCccC------hhhccCCCCcEEECcCceeeeecCccc-ccccce
Confidence 8775421111111 1257788888887763211111 122368999999999997666777643 568999
Q ss_pred eEEEccCCCcc
Q 002071 925 ELYILGCAIPG 935 (973)
Q Consensus 925 ~L~i~~c~~l~ 935 (973)
.|++++|....
T Consensus 479 ~L~ls~n~l~~ 489 (968)
T PLN00113 479 NLDLSRNQFSG 489 (968)
T ss_pred EEECcCCccCC
Confidence 99999998653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.2e-24 Score=229.39 Aligned_cols=338 Identities=22% Similarity=0.238 Sum_probs=201.7
Q ss_pred ceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCC
Q 002071 546 KVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRL 625 (973)
Q Consensus 546 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L 625 (973)
.++.+.+.......+|..+..+.+|..|.+..+.+ .. ...-++.++.||.+++..|++.+. -+|..|-+|
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L------~~-vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l 102 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL------IS-VHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRL 102 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh------Hh-hhhhhccchhhHHHhhhccccccC---CCCchhccc
Confidence 34455555544444555556666666665555432 11 111245566666666666555432 256667777
Q ss_pred CCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccc-cCCCCcceeecCCCCCCCcccccCCCccccccCCe
Q 002071 626 VHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGI-GKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVE 704 (973)
Q Consensus 626 ~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 704 (973)
..|..||||+|.+.+.|..+...+++-+|+|++|+ ++.+|..+ .+|+.|-.|++++| .+..+|+.+..|.+||+|.+
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhc
Confidence 77777777777777777777777777777777765 66776543 36666777777766 45667777777777777765
Q ss_pred eeeCCCCCCCCCCccCcccccCCCccCceeeec----cCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchH
Q 002071 705 FHVSGGGGVGGSNACRLESLKNLELLHVCGIRR----LGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDD 780 (973)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~----l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 780 (973)
.++.... ..+.+|++|+.|..+.... +.++|. .+..+.||..++++.|...
T Consensus 181 s~NPL~h-------fQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------sld~l~NL~dvDlS~N~Lp----------- 235 (1255)
T KOG0444|consen 181 SNNPLNH-------FQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------SLDDLHNLRDVDLSENNLP----------- 235 (1255)
T ss_pred CCChhhH-------HHHhcCccchhhhhhhcccccchhhcCCC-------chhhhhhhhhccccccCCC-----------
Confidence 5544321 2344455544444333322 233333 4556667777777766542
Q ss_pred HHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccc
Q 002071 781 QQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFL 859 (973)
Q Consensus 781 ~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 859 (973)
.+++.+-..++|.+|+|++|.++. +.-....-.+|++|+|+.|++ ..+|. +.+|+.|+.|.+.+ .++. +-
T Consensus 236 -~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~-NkL~-----Fe 306 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANN-NKLT-----FE 306 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhcc-Cccc-----cc
Confidence 245556666777777777777666 444444456777777777754 34555 66777777777755 1111 11
Q ss_pred ccc--CCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCcccc
Q 002071 860 GIE--IIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIPGVR 937 (973)
Q Consensus 860 ~~~--~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l~~~ 937 (973)
|.+ .+.+.+|+.+...+. +|+-.+ .+.+.++.|+.|.++.+ .|-++|.++.-++.|+.|++..|+++.-+
T Consensus 307 GiPSGIGKL~~Levf~aanN-~LElVP------EglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANN-KLELVP------EGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred CCccchhhhhhhHHHHhhcc-ccccCc------hhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 111 112333444443332 334333 25567888999999655 56679998888899999999999876443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.5e-23 Score=220.63 Aligned_cols=323 Identities=23% Similarity=0.237 Sum_probs=249.6
Q ss_pred CcceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 544 GEKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
-.++.|+++..+....+...+..++.||++++..+.+..+.+ +++ +..++.|.+|||++ +.+.+.|..+.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi----P~d-iF~l~dLt~lDLSh-----NqL~EvP~~LE 123 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGI----PTD-IFRLKDLTILDLSH-----NQLREVPTNLE 123 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCC----Cch-hcccccceeeecch-----hhhhhcchhhh
Confidence 457889999888877667778899999999998887654433 555 55789999999999 56667899999
Q ss_pred CCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccC
Q 002071 624 RLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTL 702 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 702 (973)
.-+++-.|+||+|+|..+|.+ +-+|.-|-+|||++|. ++.+|+.+..|.+|+.|.+++|+....--..+..|++|++|
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 999999999999999999966 5689999999999998 99999999999999999999996544333445567778887
Q ss_pred CeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHH
Q 002071 703 VEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQ 782 (973)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 782 (973)
++...... ...+|..+..+.+|..++++.+.. ..+|. .+-++.+|+.|+|+.|......
T Consensus 203 hms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~L-p~vPe-------cly~l~~LrrLNLS~N~iteL~---------- 261 (1255)
T KOG0444|consen 203 HMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNL-PIVPE-------CLYKLRNLRRLNLSGNKITELN---------- 261 (1255)
T ss_pred hcccccch---hhcCCCchhhhhhhhhccccccCC-CcchH-------HHhhhhhhheeccCcCceeeee----------
Confidence 76554322 233577788899999999877654 33443 5667889999999988654220
Q ss_pred HHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCC-CcCCC-CCCcCcccceeccccccceeeCccccc
Q 002071 783 LLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKC-KQIPP-LGKLSSLEKLMIWGLKSVKRVANEFLG 860 (973)
Q Consensus 783 ~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~ 860 (973)
-......+|++|+++.|.++. +|..++.++.|++|.+.+|++. +.+|+ +|+|.+|+++...+ ..++-.+..+
T Consensus 262 --~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEgl-- 335 (1255)
T KOG0444|consen 262 --MTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGL-- 335 (1255)
T ss_pred --ccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhh--
Confidence 011224689999999999988 9999999999999999999865 46787 99999999999876 3343333322
Q ss_pred ccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCC
Q 002071 861 IEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALP 914 (973)
Q Consensus 861 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp 914 (973)
..+++|+.|.+... .|-.++. ....+|-|+.|++..+|+|..-|
T Consensus 336 ---cRC~kL~kL~L~~N-rLiTLPe------aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 ---CRCVKLQKLKLDHN-RLITLPE------AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ---hhhHHHHHhccccc-ceeechh------hhhhcCCcceeeccCCcCccCCC
Confidence 26888999988654 3433332 34468999999999999997544
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=8.8e-19 Score=222.00 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=229.4
Q ss_pred HHHHHhhcccccEEEeccccccc--ccccccCccccCCC-CCcEEEecCCCccccchhhhccccccEEecCCCCCCcccC
Q 002071 590 LEELFEELTSLRAIEVSKLFYTK--STILEIPTNVKRLV-HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELP 666 (973)
Q Consensus 590 ~~~~~~~l~~Lr~L~L~~~~~~~--~~~~~lp~~i~~L~-~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp 666 (973)
....|..|++|+.|.+..+.+.. .....+|..+..++ +|++|++.++.+..+|..+ .+.+|+.|++.+|. +..+|
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccc
Confidence 45568999999999997653221 11224677777765 5999999999999999887 57999999999997 89999
Q ss_pred ccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhh
Q 002071 667 QGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGE 746 (973)
Q Consensus 667 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~ 746 (973)
.++..+++|+.|++++|..+..+| .++.+++|++|++..+.... ..+..+..+++|+.|++.+|..++.+|..
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-- 700 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENLEILPTG-- 700 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCcCccCCc--
Confidence 999999999999999987777777 48889999999887654332 24667788899999998888877776641
Q ss_pred hhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCcc---------------
Q 002071 747 AKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWM--------------- 811 (973)
Q Consensus 747 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~--------------- 811 (973)
+ ++++|+.|.+++|..... ++ ..+.+|+.|+|+++.+.. +|..+
T Consensus 701 -----i-~l~sL~~L~Lsgc~~L~~-----------~p---~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 701 -----I-NLKSLYRLNLSGCSRLKS-----------FP---DISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred -----C-CCCCCCEEeCCCCCCccc-----------cc---cccCCcCeeecCCCcccc-ccccccccccccccccccch
Confidence 1 567888888887643211 00 113456666666665544 55432
Q ss_pred ---------------ccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecc
Q 002071 812 ---------------MPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFY 875 (973)
Q Consensus 812 ---------------~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~ 875 (973)
..+++|+.|+|++|.....+|. ++++++|+.|+|.+|..++.++... .+++|+.|.+.
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------~L~sL~~L~Ls 833 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------NLESLESLDLS 833 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------CccccCEEECC
Confidence 1235788888888877777776 8899999999999998887765422 47899999999
Q ss_pred cccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCccc
Q 002071 876 WMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIPGV 936 (973)
Q Consensus 876 ~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l~~ 936 (973)
+|.++..++. ..++|+.|+++++ .++.+|..+..+++|+.|++.+|+.+..
T Consensus 834 ~c~~L~~~p~---------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 834 GCSRLRTFPD---------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCccccccc---------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 9988776543 4578999999887 6888999899999999999999987765
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=7.1e-20 Score=195.59 Aligned_cols=335 Identities=21% Similarity=0.189 Sum_probs=208.0
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccc-hhhh
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLP-ETLC 646 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~ 646 (973)
+..++|+++++.+ .++-..+|.++++|+.+++.+ +.+..+|...+...||+.|+|.+|.|..+. +++.
T Consensus 78 ~~t~~LdlsnNkl------~~id~~~f~nl~nLq~v~l~~-----N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~ 146 (873)
T KOG4194|consen 78 SQTQTLDLSNNKL------SHIDFEFFYNLPNLQEVNLNK-----NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELS 146 (873)
T ss_pred cceeeeecccccc------ccCcHHHHhcCCcceeeeecc-----chhhhcccccccccceeEEeeeccccccccHHHHH
Confidence 4567899998876 334455688999999999998 455568888888888999999999888664 5688
Q ss_pred ccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCccccc
Q 002071 647 ELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLK 725 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 725 (973)
-++.|++|||+.|. +.++|. .+..-.++++|+|++|.+...--..+..+.+|-+|.+..+.... .....|+.|+
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt----Lp~r~Fk~L~ 221 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT----LPQRSFKRLP 221 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc----cCHHHhhhcc
Confidence 88899999999886 777664 34455688999998886654444557777777777766655443 2244566677
Q ss_pred CCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCC------------CcchHHH-HHhhcCCCCC
Q 002071 726 NLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRR------------KEEDDQQ-LLEALQPPLN 792 (973)
Q Consensus 726 ~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~------------~~~~~~~-~l~~l~~~~~ 792 (973)
+|+.|++..+..-..- ...+..+++|+.|.|..|......+.. ....... .-.++-.+..
T Consensus 222 ~L~~LdLnrN~irive-------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVE-------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred hhhhhhccccceeeeh-------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 7777776555431110 012334444444444443322110000 0000000 1123445566
Q ss_pred ccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC--CCCcCcccceeccccccceeeCcccccccCCC---CC
Q 002071 793 LKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP--LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIA---FP 867 (973)
Q Consensus 793 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~---f~ 867 (973)
|+.|+++.|.+...-++....+++|+.|+|++|.+.. ++. +..|..|++|.|+. |.+.....++ +.
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~--------Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSH--------NSIDHLAEGAFVGLS 365 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccc--------cchHHHHhhHHHHhh
Confidence 7777777777666445555667777777777776543 333 66677777777765 2222222233 44
Q ss_pred cccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCC-CCCCCCCcceEEEccCCCccccc
Q 002071 868 KLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD-HFHQMTTLKELYILGCAIPGVRF 938 (973)
Q Consensus 868 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~-~l~~l~~L~~L~i~~c~~l~~~~ 938 (973)
+|++|++.... + .|...= +...-..+|+|++|.+.++ +++.||. .+..++.|++|++.+|.+-....
T Consensus 366 sL~~LdLr~N~-l-s~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 366 SLHKLDLRSNE-L-SWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred hhhhhcCcCCe-E-EEEEec-chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecc
Confidence 55555554321 1 233310 1111224899999999998 7999986 56789999999999998754443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.7e-20 Score=197.75 Aligned_cols=344 Identities=20% Similarity=0.203 Sum_probs=242.4
Q ss_pred cceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-cccc
Q 002071 545 EKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVK 623 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~ 623 (973)
.++..+.+..+....+|.-.....+|..|.+..+.+ ..+-.+.+..++.||+|||+.|.++ .+| .++.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I------~sv~se~L~~l~alrslDLSrN~is-----~i~~~sfp 170 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI------SSVTSEELSALPALRSLDLSRNLIS-----EIPKPSFP 170 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccc------ccccHHHHHhHhhhhhhhhhhchhh-----cccCCCCC
Confidence 455666666666666666556666788888877765 2233445788899999999996554 444 3455
Q ss_pred CCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCcc-ccCCCCcceeecCCCCCCCcc-cccCCCccccc
Q 002071 624 RLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHLLDDKTDSLGHM-PVGIGRLTSLR 700 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~ 700 (973)
+-.++++|+|++|.|+.+- ..|.+|.+|-+|.|+.|. +..+|.. +.+|++|+.|+|..|.+ ..+ -..+..|.+|+
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhh
Confidence 5678999999999999774 468889999999999998 8889864 55699999999998854 222 23367888888
Q ss_pred cCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchH
Q 002071 701 TLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDD 780 (973)
Q Consensus 701 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 780 (973)
.|.+-.+.... .....|-.+.++++|++..+.... .....+.++..|+.|+|++|...+.
T Consensus 249 nlklqrN~I~k----L~DG~Fy~l~kme~l~L~~N~l~~-------vn~g~lfgLt~L~~L~lS~NaI~ri--------- 308 (873)
T KOG4194|consen 249 NLKLQRNDISK----LDDGAFYGLEKMEHLNLETNRLQA-------VNEGWLFGLTSLEQLDLSYNAIQRI--------- 308 (873)
T ss_pred hhhhhhcCccc----ccCcceeeecccceeecccchhhh-------hhcccccccchhhhhccchhhhhee---------
Confidence 88765544332 123345667888888877765432 2233678899999999999865332
Q ss_pred HHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCC-CCCCcCcccceeccccccceeeCcccc
Q 002071 781 QQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIP-PLGKLSSLEKLMIWGLKSVKRVANEFL 859 (973)
Q Consensus 781 ~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 859 (973)
-.+++...++|+.|+|+.|.++..-+..+..|..|+.|.|+.|.+...-. .+..+.+|++|+|..-. +.-.-.. .
T Consensus 309 --h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IED-a 384 (873)
T KOG4194|consen 309 --HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED-A 384 (873)
T ss_pred --ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec-c
Confidence 23466778999999999999998335567789999999999997543212 26678999999998721 1111111 0
Q ss_pred cccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCC
Q 002071 860 GIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCA 932 (973)
Q Consensus 860 ~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~ 932 (973)
...-.++|+|+.|.+.+. +++.++. .-...+++|+.|++.+++.-.--|..+..+ .|++|.+..-.
T Consensus 385 a~~f~gl~~LrkL~l~gN-qlk~I~k-----rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGN-QLKSIPK-----RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred hhhhccchhhhheeecCc-eeeecch-----hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 111236899999999886 6766654 112358999999999997544446667777 99999876543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=4.9e-20 Score=188.55 Aligned_cols=237 Identities=23% Similarity=0.268 Sum_probs=181.8
Q ss_pred EEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCC
Q 002071 548 CHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVH 627 (973)
Q Consensus 548 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~ 627 (973)
.-+.++.+.....|.++..+..+..+.++.+.. ..++++ ...+..|+.|+.++ +.+..+|++|+.+..
T Consensus 71 ~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l------s~lp~~-i~s~~~l~~l~~s~-----n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL------SELPEQ-IGSLISLVKLDCSS-----NELKELPDSIGRLLD 138 (565)
T ss_pred eEEEeccchhhhCCHHHHHHHHHHHhhcccchH------hhccHH-Hhhhhhhhhhhccc-----cceeecCchHHHHhh
Confidence 345556666666788888888888888887764 333444 77888899999999 555678999999999
Q ss_pred CcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeee
Q 002071 628 LRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 628 L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 707 (973)
|..|+..+|+|..+|..+.++..|..|++.+|. +..+|+....++.|+||+...| .++.+|+.+|.|.+|..|++..+
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc
Confidence 999999999999999999999999999999997 8888888888999999998777 67889999999999999887666
Q ss_pred CCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhc
Q 002071 708 SGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEAL 787 (973)
Q Consensus 708 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l 787 (973)
.... .| .|..+..|+.|+...+.. +-+ -.+.+..++++..|++..|... ++++.+
T Consensus 217 ki~~-----lP-ef~gcs~L~Elh~g~N~i-~~l------pae~~~~L~~l~vLDLRdNklk------------e~Pde~ 271 (565)
T KOG0472|consen 217 KIRF-----LP-EFPGCSLLKELHVGENQI-EML------PAEHLKHLNSLLVLDLRDNKLK------------EVPDEI 271 (565)
T ss_pred cccc-----CC-CCCccHHHHHHHhcccHH-Hhh------HHHHhcccccceeeeccccccc------------cCchHH
Confidence 5443 23 566677777777655432 111 1224456788888888877553 234555
Q ss_pred CCCCCccEEEEeeecCCCCCCCccccccCccEEEEecC
Q 002071 788 QPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKC 825 (973)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~ 825 (973)
..+.+|++|++++|.++. +|..++++ +|+.|.+.+|
T Consensus 272 clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCC
Confidence 667788888888888887 88888888 8888888877
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=4.9e-18 Score=174.05 Aligned_cols=255 Identities=20% Similarity=0.221 Sum_probs=173.6
Q ss_pred EEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEE
Q 002071 552 LSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYL 631 (973)
Q Consensus 552 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L 631 (973)
+..+..........++..+.+|.+..+.. ...++. ++.+..+..|++++ +.+.++|..++.+..|+.|
T Consensus 52 ls~N~l~~l~~dl~nL~~l~vl~~~~n~l------~~lp~a-ig~l~~l~~l~vs~-----n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 52 LSHNDLEVLREDLKNLACLTVLNVHDNKL------SQLPAA-IGELEALKSLNVSH-----NKLSELPEQIGSLISLVKL 119 (565)
T ss_pred hccCchhhccHhhhcccceeEEEeccchh------hhCCHH-HHHHHHHHHhhccc-----chHhhccHHHhhhhhhhhh
Confidence 33333333344455666667777666653 222333 66677777777777 4555677778888888888
Q ss_pred EecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCC
Q 002071 632 NLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGG 711 (973)
Q Consensus 632 ~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 711 (973)
+.++|.+.++|++|+.+..|..|+..+|+ +..+|.+++++.+|..|++.+|.. ..+|+..-.|+.|+.|+...+...
T Consensus 120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred hccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchhhhh-
Confidence 88888777788778888888888777776 777787787777777777777743 455555445777777764433322
Q ss_pred CCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCC
Q 002071 712 GVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPL 791 (973)
Q Consensus 712 ~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 791 (973)
..|..++.+.+|..|++..+... .+| .+.+++.|+.|++..|... .-..+.+..++
T Consensus 197 ----tlP~~lg~l~~L~~LyL~~Nki~-~lP--------ef~gcs~L~Elh~g~N~i~-----------~lpae~~~~L~ 252 (565)
T KOG0472|consen 197 ----TLPPELGGLESLELLYLRRNKIR-FLP--------EFPGCSLLKELHVGENQIE-----------MLPAEHLKHLN 252 (565)
T ss_pred ----cCChhhcchhhhHHHHhhhcccc-cCC--------CCCccHHHHHHHhcccHHH-----------hhHHHHhcccc
Confidence 24666666666666665554432 223 2455666677766554221 11123455789
Q ss_pred CccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccc
Q 002071 792 NLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWG 847 (973)
Q Consensus 792 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 847 (973)
+|..|++..|.++. +|..+.-+.+|.+|++++|.+..--+.+|++ +|+.|.+.|
T Consensus 253 ~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred cceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 99999999999998 9999999999999999999876544449999 999999987
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=5.2e-17 Score=183.49 Aligned_cols=102 Identities=26% Similarity=0.425 Sum_probs=67.6
Q ss_pred CceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhcc
Q 002071 569 RMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCEL 648 (973)
Q Consensus 569 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L 648 (973)
+|.+|+++++..+ .++.. +..+.+|+.|+++. +.+..+|.++.++.+|+||+|.+|.+..+|.++..+
T Consensus 46 ~L~~l~lsnn~~~------~fp~~-it~l~~L~~ln~s~-----n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS------SFPIQ-ITLLSHLRQLNLSR-----NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred eeEEeeccccccc------cCCch-hhhHHHHhhcccch-----hhHhhCchhhhhhhcchhheeccchhhcCchhHHhh
Confidence 3777777776541 21222 45566777777777 444456777777777777777777777777777777
Q ss_pred ccccEEecCCCCCCcccCccccCCCCcceeecCCC
Q 002071 649 YNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 649 ~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 683 (973)
++|++|+++.|. ...+|.-+..+..+..+..++|
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hcccccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 777777777776 5566666666666666666555
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=5.3e-16 Score=175.48 Aligned_cols=343 Identities=23% Similarity=0.281 Sum_probs=200.4
Q ss_pred CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc
Q 002071 560 FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE 639 (973)
Q Consensus 560 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~ 639 (973)
+|..+.....+..|.+..+.+ ...+-++..+.-.|+.||+++ +.+..+|..|+.+.+|+.|+++.|.|.
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~------l~~pl~~~~~~v~L~~l~lsn-----n~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSL------LSRPLEFVEKRVKLKSLDLSN-----NQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cchhhccHHHHHhhhcccccc------ccCchHHhhheeeeEEeeccc-----cccccCCchhhhHHHHhhcccchhhHh
Confidence 333333333355555554432 111233445555599999999 556678999999999999999999999
Q ss_pred ccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCC----
Q 002071 640 KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGG---- 715 (973)
Q Consensus 640 ~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~---- 715 (973)
..|.+++++.+||+|+|.+|. +..+|.++..+++|+.|+++.|.. ...|.-+..++.+..+...++........
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik 159 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIK 159 (1081)
T ss_pred hCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccch
Confidence 999999999999999999987 999999999999999999999954 66777777776666555443311100000
Q ss_pred --------CCccCcccccCCCc-cCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCC-------CCCCcch
Q 002071 716 --------SNACRLESLKNLEL-LHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDG-------GRRKEED 779 (973)
Q Consensus 716 --------~~~~~l~~l~~L~~-L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-------~~~~~~~ 779 (973)
.....+.....|++ |++..+... ...+..+.+|+.|....|...... .......
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHN 229 (1081)
T ss_pred hhhhhhhhcccchhcchhhhheeeecccchhh----------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccC
Confidence 00001111222222 333333221 112233333333333322211000 0000000
Q ss_pred HHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCC----------------------cCCC-CCC
Q 002071 780 DQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCK----------------------QIPP-LGK 836 (973)
Q Consensus 780 ~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~----------------------~l~~-l~~ 836 (973)
.......-.-+.+|+.++++.+.+.. +|+|+..+.+|+.|...+|.+.. .+|. ++.
T Consensus 230 ~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 230 PLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEG 308 (1081)
T ss_pred cceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccc
Confidence 00011122335789999999999988 99999999999999998875432 1233 455
Q ss_pred cCcccceeccccccceeeCcccc---------------------cccCCCCCcccEeecccccccccccccccCCCccCc
Q 002071 837 LSSLEKLMIWGLKSVKRVANEFL---------------------GIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSI 895 (973)
Q Consensus 837 l~~L~~L~L~~~~~l~~~~~~~~---------------------~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 895 (973)
+.+|+.|+|.. .+|...+..+. ..+...++.|+.|.+.+. .|.+-++ .....
T Consensus 309 ~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~-----p~l~~ 381 (1081)
T KOG0618|consen 309 LKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCF-----PVLVN 381 (1081)
T ss_pred cceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccch-----hhhcc
Confidence 66666666654 11111111000 001112333444443332 1211111 12345
Q ss_pred ccccceeeeccCccCCCCCC-CCCCCCCcceEEEccCCCc
Q 002071 896 MPCLSYLAIISCPKLKALPD-HFHQMTTLKELYILGCAIP 934 (973)
Q Consensus 896 ~p~L~~L~i~~c~~l~~lp~-~l~~l~~L~~L~i~~c~~l 934 (973)
|++|+.|++++| .|.++|. .+.+++.|++|+++||...
T Consensus 382 ~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 382 FKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhh
Confidence 888999999888 5888887 3567888999999998753
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=8.2e-14 Score=163.62 Aligned_cols=260 Identities=18% Similarity=0.192 Sum_probs=172.4
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcce
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKH 677 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~ 677 (973)
..-.+|+++. +.+..+|..+. .+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|++
T Consensus 201 ~~~~~LdLs~-----~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGE-----SGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCC-----CCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccce
Confidence 3456788888 44445777665 3788888888888888752 5788888888886 7777753 457888
Q ss_pred eecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCC
Q 002071 678 LLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKY 757 (973)
Q Consensus 678 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~ 757 (973)
|++++|. +..+|... ++|+.|++..+.... ++. .+++|+.|++.+|... .++. ...+
T Consensus 267 L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~-~Lp~----------lp~~ 323 (788)
T PRK15387 267 LSIFSNP-LTHLPALP---SGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLA-SLPA----------LPSE 323 (788)
T ss_pred eeccCCc-hhhhhhch---hhcCEEECcCCcccc-----ccc---cccccceeECCCCccc-cCCC----------Cccc
Confidence 8888774 34555432 345555544433221 121 2356777777766442 2332 1235
Q ss_pred CCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCc
Q 002071 758 LSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKL 837 (973)
Q Consensus 758 L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 837 (973)
|+.|.++.|..... + ..+.+|+.|+|++|.++. +|.. ..+|+.|++++|.+. .+|.+ .
T Consensus 324 L~~L~Ls~N~L~~L------------P---~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l--~ 381 (788)
T PRK15387 324 LCKLWAYNNQLTSL------------P---TLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--P 381 (788)
T ss_pred ccccccccCccccc------------c---ccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc--c
Confidence 67777777654221 0 123589999999999887 7764 457888899888765 46653 3
Q ss_pred CcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCC
Q 002071 838 SSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHF 917 (973)
Q Consensus 838 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l 917 (973)
++|+.|+|+++ .+...+ ..+++|+.|+++++ .+..++. .+.+|+.|++++| +++.+|..+
T Consensus 382 ~~L~~LdLs~N--------~Lt~LP-~l~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~N-qLt~LP~sl 441 (788)
T PRK15387 382 SGLKELIVSGN--------RLTSLP-VLPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRN-QLTRLPESL 441 (788)
T ss_pred cccceEEecCC--------cccCCC-CcccCCCEEEccCC-cCCCCCc---------chhhhhhhhhccC-cccccChHH
Confidence 57889998772 222221 23568899988876 3544332 3457999999988 588999988
Q ss_pred CCCCCcceEEEccCCCccc
Q 002071 918 HQMTTLKELYILGCAIPGV 936 (973)
Q Consensus 918 ~~l~~L~~L~i~~c~~l~~ 936 (973)
.++++|+.|++++|+..+.
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhccCCCeEECCCCCCCch
Confidence 9999999999999987544
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.3e-11 Score=154.04 Aligned_cols=292 Identities=15% Similarity=0.213 Sum_probs=179.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC-ccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS-EAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i 261 (973)
..++-|.. +.+.|.. ....+++.|+|++|.||||++..+... ++.++|+++. .+.+...+...+
T Consensus 14 ~~~~~R~r----l~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRER----LLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchH----HHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34566654 4444432 235789999999999999999998752 2368999996 444666676777
Q ss_pred HHHhcCCCCC-------------CCcHHHHHHHHHHHhc--CCcEEEEEecCCCCCccChhhHH-hhhcCCCCCcEEEEE
Q 002071 262 VEALDVSSSG-------------LGEFQSLLKTISKSIT--GKRFFLVLDDVWDGDYMKWEPFY-HCLKNGLPESKILVT 325 (973)
Q Consensus 262 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~w~~l~-~~l~~~~~gs~iivT 325 (973)
+..+...... ..+...+...+...+. +.+++|||||+...+......+. ..++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7776421111 0122333333333332 67999999999776544434333 334444567789899
Q ss_pred cCChH---HHHHhCCCCeeeCC----CCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcC
Q 002071 326 TRKES---VAFMMGSTDIIPVQ----ELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRS 398 (973)
Q Consensus 326 tr~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 398 (973)
||... ............+. +|+.+|+.+||.......-. .+....|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~-------~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE-------AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC-------HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99742 11111112345555 99999999999876532211 344578999999999999998877754
Q ss_pred CCC-HHHHHHHHhhhhhhhhhh-cccchhhhh-hhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCC
Q 002071 399 KKT-EEEWQRILSSELWKIEEI-EKGVLTPLW-LSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDE 475 (973)
Q Consensus 399 ~~~-~~~w~~~~~~~~~~~~~~-~~~~~~~l~-~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~ 475 (973)
... .... .+.+... ...+...+. -.++.||++.+..+...|+++ .++.+ +... +...
T Consensus 232 ~~~~~~~~-------~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~-----l~~~---- 291 (903)
T PRK04841 232 NNSSLHDS-------ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR-----VTGE---- 291 (903)
T ss_pred CCCchhhh-------hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH-----HcCC----
Confidence 432 1110 0111110 112333332 347899999999999999997 34432 2221 1111
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHh
Q 002071 476 ETNIIGEEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVS 522 (973)
Q Consensus 476 ~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~ 522 (973)
+.+...+++|.+++++..... ..+ ..|+.|++++++.+...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~-~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMD-DSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeec-CCC--CEEehhHHHHHHHHHHH
Confidence 124677999999999753221 112 25788999999998764
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=2.2e-10 Score=129.95 Aligned_cols=317 Identities=14% Similarity=0.081 Sum_probs=186.7
Q ss_pred cCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 180 IDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..+..++||+++++++...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3456799999999999999854321 12344578999999999999999998533222223466777777778888999
Q ss_pred HHHHHhcCC-C-CCCCcHHHHHHHHHHHhc--CCcEEEEEecCCCCC-ccChhhHHhhhc--CCCCCcE--EEEEcCChH
Q 002071 260 AIVEALDVS-S-SGLGEFQSLLKTISKSIT--GKRFFLVLDDVWDGD-YMKWEPFYHCLK--NGLPESK--ILVTTRKES 330 (973)
Q Consensus 260 ~i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-~~~w~~l~~~l~--~~~~gs~--iivTtr~~~ 330 (973)
.|++++... . ....+.+++...+.+.++ ++..+||||+++.-. ....+.+...+. ....+++ +|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999998752 2 223356667777777775 456899999997643 112233333322 1123333 666666544
Q ss_pred HHHHhC-------CCCeeeCCCCCHHHHHHHHHHHhccC--CCcccchhHHHHHHHHHHhcCCchHHHHHHHhhh--c--
Q 002071 331 VAFMMG-------STDIIPVQELAEEECWLLFNRIAFFG--RPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLM--R-- 397 (973)
Q Consensus 331 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~-- 397 (973)
+..... ....+.+.+++.++..+++..++... .....+..++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332221 12467899999999999999876322 1112222334444444444566777777664322 1
Q ss_pred -CC--CCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcCC--CceeCHHHHHHH--HHHcCCCC
Q 002071 398 -SK--KTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPK--DFNIEKERLITL--WMAQGYLG 470 (973)
Q Consensus 398 -~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~--~~~i~~~~li~~--wia~g~i~ 470 (973)
+. -+.+....+.+... .....-.+..||.+.|..+..++..-+ ...+...++... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 14555555544320 112334578999988876665543321 134555555533 23322110
Q ss_pred CCCCCcHHHHHHHHHHHHHhccccccccc--CCCCCeeEEEEc
Q 002071 471 VEQDEETNIIGEEYFNILATRSFFQEFKK--DDDNRIIECKMH 511 (973)
Q Consensus 471 ~~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~~H 511 (973)
. .. .......|+++|...|+++.... +..|+.+.++++
T Consensus 335 ~--~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 335 E--PR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred C--cC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0 01 12334669999999999987543 334555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=9.5e-13 Score=155.94 Aligned_cols=245 Identities=15% Similarity=0.178 Sum_probs=128.1
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCccee
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHL 678 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L 678 (973)
+..+|++++ ..+..+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|
T Consensus 179 ~~~~L~L~~-----~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 179 NKTELRLKI-----LGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEM 246 (754)
T ss_pred CceEEEeCC-----CCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEE
Confidence 456677776 44445665553 467777777777777776554 477777777776 666776443 367777
Q ss_pred ecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCC
Q 002071 679 LDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYL 758 (973)
Q Consensus 679 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L 758 (973)
++++|.. ..+|..+. ++|+.|++..+.... ++..+ ..+|
T Consensus 247 ~Ls~N~L-~~LP~~l~--s~L~~L~Ls~N~L~~-----LP~~l---------------------------------~~sL 285 (754)
T PRK15370 247 ELSINRI-TELPERLP--SALQSLDLFHNKISC-----LPENL---------------------------------PEEL 285 (754)
T ss_pred ECcCCcc-CcCChhHh--CCCCEEECcCCccCc-----ccccc---------------------------------CCCC
Confidence 7777743 35555442 245555433221110 01111 0134
Q ss_pred CcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCc
Q 002071 759 SCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKL 837 (973)
Q Consensus 759 ~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l 837 (973)
+.|++++|..... ...+ +++|+.|++++|.+.. +|..+ .++|+.|++++|.+.. +|. + .
T Consensus 286 ~~L~Ls~N~Lt~L------------P~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~ 345 (754)
T PRK15370 286 RYLSVYDNSIRTL------------PAHL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--P 345 (754)
T ss_pred cEEECCCCccccC------------cccc--hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--c
Confidence 4444444332110 0001 1345555555555544 44432 2455666666554332 332 2 2
Q ss_pred CcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCC
Q 002071 838 SSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHF 917 (973)
Q Consensus 838 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l 917 (973)
++|+.|+|+++. +..++ ....++|+.|++.++ ++..++. ...++|+.|++++| ++..+|..+
T Consensus 346 ~sL~~L~Ls~N~-L~~LP-------~~lp~~L~~LdLs~N-~Lt~LP~--------~l~~sL~~LdLs~N-~L~~LP~sl 407 (754)
T PRK15370 346 PELQVLDVSKNQ-ITVLP-------ETLPPTITTLDVSRN-ALTNLPE--------NLPAALQIMQASRN-NLVRLPESL 407 (754)
T ss_pred CcccEEECCCCC-CCcCC-------hhhcCCcCEEECCCC-cCCCCCH--------hHHHHHHHHhhccC-CcccCchhH
Confidence 456666665532 22111 112346666666665 3443332 12346888888887 567777644
Q ss_pred C----CCCCcceEEEccCCCc
Q 002071 918 H----QMTTLKELYILGCAIP 934 (973)
Q Consensus 918 ~----~l~~L~~L~i~~c~~l 934 (973)
. .++.+..|++.+|+..
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 3 3477888888888864
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=4.2e-13 Score=161.38 Aligned_cols=319 Identities=26% Similarity=0.298 Sum_probs=211.7
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-cccCCCCCcEEEecCCC-ccccc
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQS-IEKLP 642 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~-i~~Lp 642 (973)
.....+|...+.++.+.. ... -...+.|+.|-+.+|.. .+..++. .+..+++|++|||++|. +..||
T Consensus 520 ~~~~~~rr~s~~~~~~~~-------~~~-~~~~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-------IAG-SSENPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cchhheeEEEEeccchhh-------ccC-CCCCCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 344667777766655311 111 12344699998888531 1334543 37789999999999876 78999
Q ss_pred hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcc
Q 002071 643 ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLE 722 (973)
Q Consensus 643 ~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 722 (973)
++|++|.+||+|+++++. +..+|.++.+|.+|.||++..+..+...|..+..|++|++|.++...... ....+.
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~~l~ 662 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKLLLK 662 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----chhhHH
Confidence 999999999999999998 99999999999999999999987766666666779999999887754211 144566
Q ss_pred cccCCCccCceeeeccCCCCChhhhhhhhccCCCCCC----cEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEE
Q 002071 723 SLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLS----CLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLI 798 (973)
Q Consensus 723 ~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~----~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L 798 (973)
++.+|++|....+..... .....+..+..|. .+.+.++.. ......+..+.+|+.|.|
T Consensus 663 el~~Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~~------------~~~~~~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCSK------------RTLISSLGSLGNLEELSI 724 (889)
T ss_pred hhhcccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhccccc------------ceeecccccccCcceEEE
Confidence 777777777666543221 0001122223332 222211111 122335667789999999
Q ss_pred eeecCCCCCCCccc-----c-ccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCccccc---c--cCCCCC
Q 002071 799 GLYRGNTVFPGWMM-----P-LTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANEFLG---I--EIIAFP 867 (973)
Q Consensus 799 ~~~~~~~~lp~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~---~--~~~~f~ 867 (973)
.+|.+......|.. . ++++.++.+.+|.....+.+..-.|+|+.|.+..|..++.+-+.... . ....|+
T Consensus 725 ~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 725 LDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred EcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 99998652233432 2 56777888888877666666667799999999999877665432211 0 113577
Q ss_pred cccEe-ecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccC
Q 002071 868 KLKSL-TFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGC 931 (973)
Q Consensus 868 ~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c 931 (973)
++..+ .+.+++.+..+.. ..-.+|+|+.+.+..||++..+|. +.++.+.+|
T Consensus 805 ~~~~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 805 KLEGLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred ccccceeeecCCCCceeEe------cccCccchhheehhcCcccccCcc-------ccccceecc
Confidence 77777 4666665555443 122567799999999988876663 455667776
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=4.6e-14 Score=128.36 Aligned_cols=86 Identities=27% Similarity=0.404 Sum_probs=61.0
Q ss_pred ccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCcccccc
Q 002071 622 VKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRT 701 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 701 (973)
+-.+.+...|-||+|.++.+|..|..|.+|++|++.+|+ ++++|..++.|++|++|+++-| .+..+|.++|.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 334556666777777777777777777777777777776 7777777777777777777655 45667777777777777
Q ss_pred CCeeeeCC
Q 002071 702 LVEFHVSG 709 (973)
Q Consensus 702 L~~~~~~~ 709 (973)
|++..+..
T Consensus 107 ldltynnl 114 (264)
T KOG0617|consen 107 LDLTYNNL 114 (264)
T ss_pred hhcccccc
Confidence 77655443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=8.4e-14 Score=126.69 Aligned_cols=155 Identities=22% Similarity=0.301 Sum_probs=119.9
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchh
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPET 644 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~ 644 (973)
.++++...|.++.+.+ ...++. +..+.+|++|++++ +.+.++|.+|..|+.|+.|+++-|.+..+|..
T Consensus 30 f~~s~ITrLtLSHNKl------~~vppn-ia~l~nlevln~~n-----nqie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL------TVVPPN-IAELKNLEVLNLSN-----NQIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred cchhhhhhhhcccCce------eecCCc-HHHhhhhhhhhccc-----chhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 3455556666666654 122344 67888999999998 56677999999999999999999999999999
Q ss_pred hhccccccEEecCCCCCC-cccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCccc
Q 002071 645 LCELYNLQKLDVSDCYGL-KELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLES 723 (973)
Q Consensus 645 i~~L~~Lq~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 723 (973)
|+.++-|++|||..|+.- ..+|..+..|..|+-|++++| ..+.+|+.+|++++||.|.+-.+.... .+..++.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~-----lpkeig~ 171 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS-----LPKEIGD 171 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh-----CcHHHHH
Confidence 999999999999887633 348888999999999999988 457889999999999998765544332 4666777
Q ss_pred ccCCCccCceeeec
Q 002071 724 LKNLELLHVCGIRR 737 (973)
Q Consensus 724 l~~L~~L~~~~~~~ 737 (973)
+..|+.|.+.++..
T Consensus 172 lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 172 LTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHhccccee
Confidence 77777777766654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=2.2e-11 Score=143.42 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=55.3
Q ss_pred CceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhcc
Q 002071 569 RMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCEL 648 (973)
Q Consensus 569 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L 648 (973)
+|+.|.+.++.+. .++ ..+++|++|+|++|.++ .+|.. ..+|+.|+|++|.+..+|.. .
T Consensus 223 ~L~~L~L~~N~Lt------~LP----~lp~~Lk~LdLs~N~Lt-----sLP~l---p~sL~~L~Ls~N~L~~Lp~l---p 281 (788)
T PRK15387 223 HITTLVIPDNNLT------SLP----ALPPELRTLEVSGNQLT-----SLPVL---PPGLLELSIFSNPLTHLPAL---P 281 (788)
T ss_pred CCCEEEccCCcCC------CCC----CCCCCCcEEEecCCccC-----cccCc---ccccceeeccCCchhhhhhc---h
Confidence 5666666665431 111 12456777777774432 34432 34667777777777666653 2
Q ss_pred ccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccc
Q 002071 649 YNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPV 691 (973)
Q Consensus 649 ~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 691 (973)
.+|+.|++++|. +..+|.. +++|++|++++|.. ..+|.
T Consensus 282 ~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~ 319 (788)
T PRK15387 282 SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA 319 (788)
T ss_pred hhcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCC
Confidence 456667777775 6666652 35677777777633 34443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=2.7e-11 Score=143.69 Aligned_cols=240 Identities=17% Similarity=0.186 Sum_probs=134.6
Q ss_pred eEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCC
Q 002071 547 VCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLV 626 (973)
Q Consensus 547 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~ 626 (973)
...+.+.......+|..+ .++++.|.+.++.+. .++..+ +.+|++|++++|.+ ..+|..+. .
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt------sLP~~l---~~nL~~L~Ls~N~L-----tsLP~~l~--~ 241 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK------SLPENL---QGNIKTLYANSNQL-----TSIPATLP--D 241 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC------cCChhh---ccCCCEEECCCCcc-----ccCChhhh--c
Confidence 344555555554445433 246888888887652 223332 24788999988544 45676553 4
Q ss_pred CCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeee
Q 002071 627 HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFH 706 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 706 (973)
+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|. +..+|..+. ++|+.|++..
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcC
Confidence 78899999998888887764 478999998876 777887654 478899998884 455665443 3566666554
Q ss_pred eCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhh
Q 002071 707 VSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEA 786 (973)
Q Consensus 707 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~ 786 (973)
+.... ++..+ ..+|+.|.+.+|.. ..++. .+ .++|+.|+++.|..... +..
T Consensus 314 N~Lt~-----LP~~l--~~sL~~L~Ls~N~L-t~LP~-------~l--~~sL~~L~Ls~N~L~~L------------P~~ 364 (754)
T PRK15370 314 NSLTA-----LPETL--PPGLKTLEAGENAL-TSLPA-------SL--PPELQVLDVSKNQITVL------------PET 364 (754)
T ss_pred Ccccc-----CCccc--cccceeccccCCcc-ccCCh-------hh--cCcccEEECCCCCCCcC------------Chh
Confidence 43321 11111 13455555544432 22221 11 14566666665543211 111
Q ss_pred cCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-----CCCcCcccceeccc
Q 002071 787 LQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-----LGKLSSLEKLMIWG 847 (973)
Q Consensus 787 l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~ 847 (973)
+ +++|+.|+|++|.++. +|..+. .+|+.|++++|.+. .+|. .+.+|++..|.|.+
T Consensus 365 l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 365 L--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred h--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence 1 2456666666666555 555433 24666666666543 2332 22335555555544
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=9.2e-10 Score=117.80 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=117.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH----
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK---- 284 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~---- 284 (973)
+..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..++++.|+..++.+..+. +.......+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence 3468999999999999999999885321 111 22333 3344577789999999887654332 22223333332
Q ss_pred H-hcCCcEEEEEecCCCCCccChhhHHhhhcC---CCCCcEEEEEcCChHHHHHhC----------CCCeeeCCCCCHHH
Q 002071 285 S-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKN---GLPESKILVTTRKESVAFMMG----------STDIIPVQELAEEE 350 (973)
Q Consensus 285 ~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~ 350 (973)
. ..+++.++|+||+|..+...++.+...... ......|++|.... ....+. ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 268889999999998766666666543221 12233456665543 221211 13367899999999
Q ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhh
Q 002071 351 CWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLM 396 (973)
Q Consensus 351 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 396 (973)
..+++...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988765332111111124678899999999999999888776
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=6.9e-09 Score=116.41 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=176.1
Q ss_pred cCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh-ccC---ceEEEEEeCccccHH
Q 002071 180 IDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN-RKF---DKILWVCVSEAFEEF 255 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~ 255 (973)
..+..++||++++++|...|..... ......+.|+|++|+|||++++.+++..... ... -..+|+++....+..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 3345799999999999999864321 2234578999999999999999999842111 111 145778877777788
Q ss_pred HHHHHHHHHhc---CCCC-CCCcHHHHHHHHHHHhc--CCcEEEEEecCCCCCccChhh-HHhhhcC----CC--CCcEE
Q 002071 256 RIARAIVEALD---VSSS-GLGEFQSLLKTISKSIT--GKRFFLVLDDVWDGDYMKWEP-FYHCLKN----GL--PESKI 322 (973)
Q Consensus 256 ~~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~w~~-l~~~l~~----~~--~gs~i 322 (973)
.++..|++++. ...+ ...+..+....+.+.+. +++++||||+++.-.. .... +...+.. .. ....+
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~-~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG-DDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc-CCcHHHHhHhccccccCCCCCeEEE
Confidence 89999999984 2211 22244555566666653 6688999999976521 1122 2222221 11 22344
Q ss_pred EEEcCChHHHHHhC-----C--CCeeeCCCCCHHHHHHHHHHHhccC-CCcccchhHHHHHHHHHHhcCCchH-HHHHHH
Q 002071 323 LVTTRKESVAFMMG-----S--TDIIPVQELAEEECWLLFNRIAFFG-RPIEECVKLEKIGRKIAGKCRGLPL-TTKAIG 393 (973)
Q Consensus 323 ivTtr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 393 (973)
|.+|........+. . ...+.+.+.+.++..+++..++... ......++..+....++....|.|- |+.++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55554433221111 1 2468899999999999999886421 1111223444455567777788884 333322
Q ss_pred hhh--c---C--CCCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcC--CCceeCHHHHHHHHH
Q 002071 394 SLM--R---S--KKTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFP--KDFNIEKERLITLWM 464 (973)
Q Consensus 394 ~~l--~---~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~~~~li~~wi 464 (973)
.+. + . .-+.++...+.+... .....-+...||.+.|..+..++..- .+..+...++...+-
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 211 1 1 124455444433211 11223456788888886666554221 334466666666332
Q ss_pred --HcCCCCCCCCCcHHHHHHHHHHHHHhcccccccc
Q 002071 465 --AQGYLGVEQDEETNIIGEEYFNILATRSFFQEFK 498 (973)
Q Consensus 465 --a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 498 (973)
++. +.. ....+.....+++.|...|++....
T Consensus 319 ~~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 121 111 1123456778899999999998754
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=3.2e-12 Score=141.00 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=52.0
Q ss_pred HHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc-------cchhhhccccccEEecCCCCCCcc
Q 002071 592 ELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK-------LPETLCELYNLQKLDVSDCYGLKE 664 (973)
Q Consensus 592 ~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~-------Lp~~i~~L~~Lq~L~L~~~~~~~~ 664 (973)
..+..+..|++|+++++.++......++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3355566677777776555433334455555666667777776665442 234455566777777766653333
Q ss_pred cCccccCCCC---cceeecCCCC
Q 002071 665 LPQGIGKLVN---MKHLLDDKTD 684 (973)
Q Consensus 665 lp~~i~~L~~---L~~L~l~~~~ 684 (973)
.+..+..+.+ |++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc
Confidence 3333333333 6666666663
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=3.5e-10 Score=118.49 Aligned_cols=196 Identities=21% Similarity=0.191 Sum_probs=102.8
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH----
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA---- 260 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~---- 260 (973)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+. .+..-..++|+...+.........-
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 689999999999988542 3568999999999999999999883 2221124455544443332221111
Q ss_pred -----HHHHhcCC--C--------CCCCcHHHHHHHHHHHhc--CCcEEEEEecCCCCC-c-cC----hhhHHhhhcC--
Q 002071 261 -----IVEALDVS--S--------SGLGEFQSLLKTISKSIT--GKRFFLVLDDVWDGD-Y-MK----WEPFYHCLKN-- 315 (973)
Q Consensus 261 -----i~~~l~~~--~--------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-~-~~----w~~l~~~l~~-- 315 (973)
+.+.+... . ............+.+.+. +++++||+||+.... . .. ...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11112111 0 011122222333333332 456999999996653 0 01 1223333333
Q ss_pred CCCCcEEEEEcCChHHHHH--------hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 316 GLPESKILVTTRKESVAFM--------MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 316 ~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
......+++++........ .+....+.+++|+.+++++++...+-.. ... +.-.+...+|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 2234445555555544433 2334469999999999999999875433 111 1124445889999999998
Q ss_pred HHHH
Q 002071 388 TTKA 391 (973)
Q Consensus 388 ai~~ 391 (973)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8754
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=1.5e-11 Score=127.05 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=70.7
Q ss_pred CcceEEEEEEccCCCCCCc-cccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-c
Q 002071 544 GEKVCHLMLSIHEGAPFPI-STCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-N 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~ 621 (973)
|...-.+.+..+.+..+|. ++..+++||.|+++.|.+ ..+-+..|.+++.|-.|-+.++ +.++++|+ .
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I------s~I~p~AF~GL~~l~~Lvlyg~----NkI~~l~k~~ 135 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI------SFIAPDAFKGLASLLSLVLYGN----NKITDLPKGA 135 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccch------hhcChHhhhhhHhhhHHHhhcC----CchhhhhhhH
Confidence 5555556666665555433 455666666666666554 2334455666655555444442 33444553 3
Q ss_pred ccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCC
Q 002071 622 VKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKT 683 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 683 (973)
++.|..|+.|.+.-|.+.-+ ...+..|++|..|.+.+|. +..++. .+..+.+++++.+..|
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 55666666666666665533 3445666666666666654 555554 4555666666655544
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=1.9e-09 Score=118.18 Aligned_cols=275 Identities=18% Similarity=0.171 Sum_probs=146.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+|+|++..++.+...+..... .......+.|+|++|+||||||+.+++. ....+ .++..+ ......-+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 5699999999998887753211 1234567889999999999999999884 22221 122211 111112222333
Q ss_pred HHhcCCC----CCCCcH-HHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhC-
Q 002071 263 EALDVSS----SGLGEF-QSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMG- 336 (973)
Q Consensus 263 ~~l~~~~----~~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 336 (973)
..+.... ++.... ....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHHH
Confidence 3322110 000000 1112233344444455555555433211 00011 12345566666544332221
Q ss_pred -CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHHHHhhhhhh
Q 002071 337 -STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQRILSSELWK 415 (973)
Q Consensus 337 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 415 (973)
....+.+++++.++..+++.+.+...+.... .+....|++.|+|.|-.+..+...+. .|....... .
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~--~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG--V 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCC--C
Confidence 1346899999999999999988765433222 45678899999999964444443221 222211100 0
Q ss_pred hh-hhcccchhhhhhhccCCchHHHHHHh-hhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHH-HHHhcc
Q 002071 416 IE-EIEKGVLTPLWLSYNDLPSRVKRCFS-YCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNIIGEEYFN-ILATRS 492 (973)
Q Consensus 416 ~~-~~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~-~L~~~~ 492 (973)
.. ..-......+...|..|++..+..+. ....|+.+ .+..+.+.... . ...+.++..++ .|++.+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g-----~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G-----EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C-----CCcchHHHHhhHHHHHcC
Confidence 00 01112334456778889887777775 66777655 46666554432 1 11223444455 899999
Q ss_pred cccc
Q 002071 493 FFQE 496 (973)
Q Consensus 493 ll~~ 496 (973)
|++.
T Consensus 306 li~~ 309 (328)
T PRK00080 306 FIQR 309 (328)
T ss_pred Cccc
Confidence 9974
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=8.6e-10 Score=120.20 Aligned_cols=268 Identities=18% Similarity=0.142 Sum_probs=147.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+|+|++..++++..++..... .......+.++|++|+|||+||+.+++. ....+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999888853321 1234556889999999999999999884 22222 1222211111111 22222
Q ss_pred HHhcCCC----CCCCc-HHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhC-
Q 002071 263 EALDVSS----SGLGE-FQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMG- 336 (973)
Q Consensus 263 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 336 (973)
..+.... ++... .....+.+...+.+.+..+|+|+..... .| ...+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 2222111 00000 0112334455555556666666654331 11 1111 12455666777654433221
Q ss_pred -CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhc------CC--CCHHHHHH
Q 002071 337 -STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMR------SK--KTEEEWQR 407 (973)
Q Consensus 337 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~------~~--~~~~~w~~ 407 (973)
....+.+++++.++..+++.+.+........ .+....|++.|+|.|-.+..++..+. .. -+.+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~- 223 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL- 223 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH-
Confidence 1346789999999999999988764322221 44567899999999965544443221 00 0111111
Q ss_pred HHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHh-hhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHH
Q 002071 408 ILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFS-YCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNIIGEEYFN 486 (973)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~ 486 (973)
.....+...|..++++.+..+. ..+.++.+ .+..+++.... | .....++..++
T Consensus 224 --------------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e 277 (305)
T TIGR00635 224 --------------KALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYE 277 (305)
T ss_pred --------------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhh
Confidence 1222356678889988777666 55666543 45554444332 1 12234556667
Q ss_pred -HHHhcccccc
Q 002071 487 -ILATRSFFQE 496 (973)
Q Consensus 487 -~L~~~~ll~~ 496 (973)
.|++++|+..
T Consensus 278 ~~Li~~~li~~ 288 (305)
T TIGR00635 278 PYLLQIGFLQR 288 (305)
T ss_pred HHHHHcCCccc
Confidence 6999999963
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.06 E-value=1.8e-08 Score=115.29 Aligned_cols=297 Identities=17% Similarity=0.224 Sum_probs=188.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i 261 (973)
...|-|. ++++.|.. ..+.+++.|..++|.|||||+-+... ....=..+.|.+..+ +.++..+.+-+
T Consensus 19 ~~~v~R~----rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 19 DNYVVRP----RLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred ccccccH----HHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHH
Confidence 3445454 45555543 33789999999999999999998864 122335789999864 45677888888
Q ss_pred HHHhcCCCCC-------------CCcHHHHHHHHHHHhc--CCcEEEEEecCCCCCccChhh-HHhhhcCCCCCcEEEEE
Q 002071 262 VEALDVSSSG-------------LGEFQSLLKTISKSIT--GKRFFLVLDDVWDGDYMKWEP-FYHCLKNGLPESKILVT 325 (973)
Q Consensus 262 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~w~~-l~~~l~~~~~gs~iivT 325 (973)
+..+..-.++ ..+...+.+.+...+. .++..+||||..-........ +.-.+....++-.+|||
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 8888743222 1233344444544443 468999999987655444443 44445556778899999
Q ss_pred cCChHHH---HHhCCCCeeeC----CCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcC
Q 002071 326 TRKESVA---FMMGSTDIIPV----QELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRS 398 (973)
Q Consensus 326 tr~~~v~---~~~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 398 (973)
||+..-. +.--....+++ -.|+.+|+-++|.......-+ +.-.+.+.+..+|-+-|+..++=.++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9987522 21111122332 368999999999987532222 233578999999999999999988884
Q ss_pred CCCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHH
Q 002071 399 KKTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETN 478 (973)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~ 478 (973)
+.+.+.-...+.-....+.+ -...--++.||+++|..++-||+++. + -..|+..- +-+
T Consensus 240 ~~~~~q~~~~LsG~~~~l~d------YL~eeVld~Lp~~l~~FLl~~svl~~---f-~~eL~~~L------------tg~ 297 (894)
T COG2909 240 NTSAEQSLRGLSGAASHLSD------YLVEEVLDRLPPELRDFLLQTSVLSR---F-NDELCNAL------------TGE 297 (894)
T ss_pred CCcHHHHhhhccchHHHHHH------HHHHHHHhcCCHHHHHHHHHHHhHHH---h-hHHHHHHH------------hcC
Confidence 44444333322211000000 01122368899999999999999964 1 12333321 112
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHhc
Q 002071 479 IIGEEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVSQ 523 (973)
Q Consensus 479 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~~ 523 (973)
+-|...+++|.+++|+-..-.+ .+ ..|+.|.++.||-+.--+
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd-~~--~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDD-EG--QWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecC-CC--ceeehhHHHHHHHHhhhc
Confidence 3467789999999988643222 22 368999999999865543
No 32
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.8e-09 Score=104.91 Aligned_cols=143 Identities=16% Similarity=0.242 Sum_probs=91.6
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhcc----CceEEEEEeCccccHH---HHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRK----FDKILWVCVSEAFEEF---RIARAIVEALDVSSSGLGEFQSLLKTIS 283 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 283 (973)
+++.|+|.+|+||||+++.++..-..... +...+|.+........ .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 57999999999999999999875332222 4567777766544332 344444444432211 1111 122
Q ss_pred HH-hcCCcEEEEEecCCCCCcc-------Chhh-HHhhhcC-CCCCcEEEEEcCChHH---HHHhCCCCeeeCCCCCHHH
Q 002071 284 KS-ITGKRFFLVLDDVWDGDYM-------KWEP-FYHCLKN-GLPESKILVTTRKESV---AFMMGSTDIIPVQELAEEE 350 (973)
Q Consensus 284 ~~-l~~kr~LlVlDdvw~~~~~-------~w~~-l~~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 350 (973)
.. -+.++++||||++++.... .+.. +...++. ..++.+++||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999765321 1222 3333333 3578999999998766 3334445689999999999
Q ss_pred HHHHHHHHh
Q 002071 351 CWLLFNRIA 359 (973)
Q Consensus 351 ~~~lf~~~~ 359 (973)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=3.1e-11 Score=133.07 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=78.9
Q ss_pred ccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccc--cccccccCccccCCCCCcEEEecCCCcc-c
Q 002071 564 TCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYT--KSTILEIPTNVKRLVHLRYLNLSHQSIE-K 640 (973)
Q Consensus 564 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-~ 640 (973)
+..+.+|+.|.+.++.+..... ..+...+...+.|+.|+++++.+. ...+..++..+..+.+|++|++++|.+. .
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~--~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAA--KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHH--HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3455668888888776421111 123444667777889998886654 2223445566777889999999988876 4
Q ss_pred cchhhhcccc---ccEEecCCCCCCc----ccCccccCC-CCcceeecCCCCCC
Q 002071 641 LPETLCELYN---LQKLDVSDCYGLK----ELPQGIGKL-VNMKHLLDDKTDSL 686 (973)
Q Consensus 641 Lp~~i~~L~~---Lq~L~L~~~~~~~----~lp~~i~~L-~~L~~L~l~~~~~~ 686 (973)
.+..+..+.. |++|++++|.... .+...+..+ ++|+.|++++|...
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 5555666655 9999998887321 233345566 78888988888543
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.92 E-value=4.4e-11 Score=123.58 Aligned_cols=267 Identities=20% Similarity=0.132 Sum_probs=153.3
Q ss_pred ceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEEecC-CCccccch-hhh
Q 002071 570 MRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSH-QSIEKLPE-TLC 646 (973)
Q Consensus 570 Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~-~~i~~Lp~-~i~ 646 (973)
-..+.+..|.+ ..+++..|+.++.||.|||++|.+ ..+ |..+..|..|-.|-+-+ |+|+.+|. .|.
T Consensus 69 tveirLdqN~I------~~iP~~aF~~l~~LRrLdLS~N~I-----s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 69 TVEIRLDQNQI------SSIPPGAFKTLHRLRRLDLSKNNI-----SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred ceEEEeccCCc------ccCChhhccchhhhceecccccch-----hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 44556666554 456778888888888999888544 344 67777787776665555 77888884 578
Q ss_pred ccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccc-cCCCccccccCCeeeeCCCCCCCCCCccCccccc
Q 002071 647 ELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPV-GIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLK 725 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 725 (973)
+|..||-|.+..|.........+..|++|..|.+..|. ...++. .+..+.+++++.+-.+..-. ..+++
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ic---------dCnL~ 207 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFIC---------DCNLP 207 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcccc---------ccccc
Confidence 88888888888887334445567788888888887773 355555 46677777777654332111 11111
Q ss_pred CCCccC-ceeee--ccCCCCChh--hhhhhhccCCC---CCCcE--EEEecCCCCCCCCCCcchHHHHHhhcCCCCCccE
Q 002071 726 NLELLH-VCGIR--RLGNVTDVG--EAKRLELDKMK---YLSCL--RLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKE 795 (973)
Q Consensus 726 ~L~~L~-~~~~~--~l~~~~~~~--~~~~~~l~~~~---~L~~L--~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~ 795 (973)
.+..-. ...+. +..-+.... ......+.... +++++ .+...... ...-....+..+++|++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~---------d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP---------DSICPAKCFKKLPNLRK 278 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc---------CCcChHHHHhhcccceE
Confidence 111100 00000 000000000 00000000000 11111 01100000 00011223667889999
Q ss_pred EEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC--CCCcCcccceeccccccceeeCcccccccCCCCCcc---c
Q 002071 796 LLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP--LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKL---K 870 (973)
Q Consensus 796 L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L---~ 870 (973)
|++++|.++..-+.||..+..++.|.|..|++.. +.. +.++..|+.|+|++ |.+....+++|..+ .
T Consensus 279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~--------N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYD--------NQITTVAPGAFQTLFSLS 349 (498)
T ss_pred eccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecC--------CeeEEEecccccccceee
Confidence 9999999888558899999999999999987543 322 67788999999987 44444444455544 4
Q ss_pred Eeecc
Q 002071 871 SLTFY 875 (973)
Q Consensus 871 ~L~l~ 875 (973)
+|.+.
T Consensus 350 ~l~l~ 354 (498)
T KOG4237|consen 350 TLNLL 354 (498)
T ss_pred eeehc
Confidence 44444
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=7.3e-08 Score=99.47 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=96.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
.+.+.|+|.+|+|||+||+.+++. .......+.|++++... .... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-c
Confidence 357899999999999999999984 33334456777664210 0000 1111122 2
Q ss_pred cEEEEEecCCCCC-ccChh-hHHhhhcCC-CCCcEEEE-EcCC---------hHHHHHhCCCCeeeCCCCCHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGD-YMKWE-PFYHCLKNG-LPESKILV-TTRK---------ESVAFMMGSTDIIPVQELAEEECWLLFN 356 (973)
Q Consensus 290 r~LlVlDdvw~~~-~~~w~-~l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (973)
.-+|||||+|... ...|+ .+...+... ..|..+|| |++. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998743 23565 344444332 24555554 4543 3566667777899999999999999999
Q ss_pred HHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 357 RIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
+.++..+-... .++..-|++.+.|..-++..
T Consensus 172 ~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 172 RNAYQRGIELS----DEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhccCCHHHHHH
Confidence 98875432222 55667788888877655443
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=5.1e-07 Score=104.32 Aligned_cols=300 Identities=13% Similarity=0.098 Sum_probs=163.3
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh---hccCc--eEEEEEeCccccHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV---NRKFD--KILWVCVSEAFEEFR 256 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~~ 256 (973)
+..+.||++++++|...|...-. +.....++.|+|.+|.|||++++.|.+...- ..... .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 46789999999999998865432 1233467899999999999999999874211 11222 357777777778888
Q ss_pred HHHHHHHHhcCCCC-CCCcHHHHHHHHHHHhc---CCcEEEEEecCCCCCccChhhHHhhhcC-CCCCcEEEE--EcCCh
Q 002071 257 IARAIVEALDVSSS-GLGEFQSLLKTISKSIT---GKRFFLVLDDVWDGDYMKWEPFYHCLKN-GLPESKILV--TTRKE 329 (973)
Q Consensus 257 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~~~~~w~~l~~~l~~-~~~gs~iiv--Ttr~~ 329 (973)
+++.|.+++....+ ......+....+...+. +...+||||+++.-....-+.|...+.. ...+++|+| +|.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999854332 22233344455554442 2346899999975432122234433332 234566554 33321
Q ss_pred H--------HHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCC-
Q 002071 330 S--------VAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKK- 400 (973)
Q Consensus 330 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~- 400 (973)
. +...++ ...+...|.+.++-.+++..++........+..++-+|+.++..-|-.=.||.++-.+...+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 111222 234677999999999999998864322233334444455455444445566665544443211
Q ss_pred ---CHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcCC---CceeCHHHHHHHH--HHc--C-CC
Q 002071 401 ---TEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPK---DFNIEKERLITLW--MAQ--G-YL 469 (973)
Q Consensus 401 ---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~---~~~i~~~~li~~w--ia~--g-~i 469 (973)
+.++-..+.... + ...+.-....||.+.|-.+..+...-+ ...++-.++.... +++ | .+
T Consensus 992 skVT~eHVrkAleei-------E---~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL-------F---DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH-------H---hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 222222222110 0 011222345788887765553332211 1134444443322 222 1 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcccccc
Q 002071 470 GVEQDEETNIIGEEYFNILATRSFFQE 496 (973)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~L~~~~ll~~ 496 (973)
.. ....+ ....|+.+|...|+|..
T Consensus 1062 Gv--~plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1062 GM--CSNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred CC--CCcHH-HHHHHHHHHHhcCeEEe
Confidence 11 11122 55667788888887754
No 37
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.65 E-value=8.2e-08 Score=90.12 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=81.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhh---ccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVN---RKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS 285 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (973)
+.+.+.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999998742110 013467799998888999999999999998766655677777888887
Q ss_pred hcCC-cEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCC
Q 002071 286 ITGK-RFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRK 328 (973)
Q Consensus 286 l~~k-r~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~ 328 (973)
+... ..+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7644 459999999765 4333344433322 567788887665
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.64 E-value=6.4e-07 Score=93.05 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=100.7
Q ss_pred chhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 188 RVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
.+..++.+.+++.. .....|.|+|.+|+|||+||+.+++. ........++++++.-.+.. .
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~---~-------- 82 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD---P-------- 82 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---H--------
Confidence 34456666666532 24568999999999999999999874 22233455666654322100 0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc-Ch-hhHHhhhcC-CCCCcEEEEEcCChH---------HHHHh
Q 002071 268 SSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM-KW-EPFYHCLKN-GLPESKILVTTRKES---------VAFMM 335 (973)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-~w-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 335 (973)
.+...+++ .-+|||||++..... .| +.+...+.. ...+..+|+||+... +...+
T Consensus 83 -------------~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 83 -------------EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred -------------HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 01112222 238999999765432 23 345544432 123457889887532 22233
Q ss_pred CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHH
Q 002071 336 GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIG 393 (973)
Q Consensus 336 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 393 (973)
.....+++.++++++...++.+.+..... ..+ .+..+.+++.+.|.|..+.-+.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-QLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 33467899999999999999876532221 111 3445677778898887665443
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.62 E-value=3.9e-07 Score=103.01 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=103.5
Q ss_pred CceecchhHHHH---HHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNE---LISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
.+++|.+..+.. +..++.. .....+.++|++|+||||+|+.+++. .... |+.++......+-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 357888776554 6666632 24557888999999999999999873 2222 232222111111112
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEE--cCChH--HH-H
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVT--TRKES--VA-F 333 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivT--tr~~~--v~-~ 333 (973)
.++ +..... ..+++.+|+||+++.......+.+...+.. |..+++. |.+.. +. .
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222 222111 246789999999987665555666655543 4445543 33332 11 1
Q ss_pred HhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 334 MMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 334 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.......+.+.+++.++.++++.+.+....... ..--.+....|++.|+|.|..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 223346899999999999999988653211100 0111455678899999999755443
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.58 E-value=4.2e-07 Score=95.71 Aligned_cols=173 Identities=19% Similarity=0.252 Sum_probs=102.6
Q ss_pred cCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 180 IDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
+....++|....+.++++ .+.+.-.-.||++|+||||||+.+.. .....| ..+|...+-.+=++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 334456666666665554 34677888999999999999999987 333343 33333322222222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC--ChH--H-HHH
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR--KES--V-AFM 334 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr--~~~--v-~~~ 334 (973)
++++.. -+....|++.+|++|.|..-+..+-+.+.. .-..|.-|+|-+. ++. + ...
T Consensus 91 ~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHH
Confidence 222221 122335899999999998765544444443 3445677776444 432 1 222
Q ss_pred hCCCCeeeCCCCCHHHHHHHHHHHhccCCCc-c-cchhH-HHHHHHHHHhcCCchH
Q 002071 335 MGSTDIIPVQELAEEECWLLFNRIAFFGRPI-E-ECVKL-EKIGRKIAGKCRGLPL 387 (973)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~-~~~~~-~~~~~~i~~~c~GlPL 387 (973)
..-..++.+++|+.+|-.+++.+.+...... . ....+ +++-..++..++|---
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 3446799999999999999999843322111 1 11112 3345667777777553
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=6.1e-09 Score=106.80 Aligned_cols=90 Identities=22% Similarity=0.133 Sum_probs=42.1
Q ss_pred hccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCC----CCCccccccCccEEEEecCC
Q 002071 751 ELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTV----FPGWMMPLTNLRSLTLEKCE 826 (973)
Q Consensus 751 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~~ 826 (973)
.+...+.|+.+.++.|.... .......+.+..+++|+.|+|..|.++.. +-..+..+++|+.|++++|.
T Consensus 180 ~~~~~~~leevr~~qN~I~~-------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRP-------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHhccccceEEEecccccC-------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 44445555666655554321 12233445555566666666665554430 11111233556666666664
Q ss_pred CCCcC-----CC-CCCcCcccceeccc
Q 002071 827 KCKQI-----PP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 827 ~~~~l-----~~-l~~l~~L~~L~L~~ 847 (973)
+...- .. -...|+|++|.+.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCc
Confidence 33210 00 12355666666655
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=1.5e-06 Score=105.96 Aligned_cols=310 Identities=15% Similarity=0.150 Sum_probs=175.4
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe---Cccc---cHHHHH
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV---SEAF---EEFRIA 258 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~~---~~~~~~ 258 (973)
++||+.+.+.+...+.... .+...++.+.|..|||||+|+++|.. .+.+.+...+--.+ ..+. .....+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 7899999999999887653 34567999999999999999999987 33333221111111 1111 122233
Q ss_pred HHHHHHh-------------------cCCCCC--------------------C--CcHHH-----HHHHHHHHh-cCCcE
Q 002071 259 RAIVEAL-------------------DVSSSG--------------------L--GEFQS-----LLKTISKSI-TGKRF 291 (973)
Q Consensus 259 ~~i~~~l-------------------~~~~~~--------------------~--~~~~~-----~~~~l~~~l-~~kr~ 291 (973)
++++.++ +..... . ...+. .+..+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 3333333 211000 0 00011 112223333 35699
Q ss_pred EEEEecCCCCCccChhhHHhhhcCCC---C-CcEEE--EEcCCh--HHHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCC
Q 002071 292 FLVLDDVWDGDYMKWEPFYHCLKNGL---P-ESKIL--VTTRKE--SVAFMMGSTDIIPVQELAEEECWLLFNRIAFFGR 363 (973)
Q Consensus 292 LlVlDdvw~~~~~~w~~l~~~l~~~~---~-gs~ii--vTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 363 (973)
++|+||+.+.+....+.+......-. . ...|. .|.+.. .+...-.....+.|.||+..+...+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 99999997766555544443332221 1 11233 333332 1122223346899999999999999998774322
Q ss_pred CcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCC------CCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchH
Q 002071 364 PIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSK------KTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSR 437 (973)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 437 (973)
. ...+....|+++..|+|+.+.-+-..+... .+...|..=. ......... ..+...+..-.+.||..
T Consensus 237 ~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~-~~i~~~~~~-~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 L-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI-ASLGILATT-DAVVEFLAARLQKLPGT 309 (849)
T ss_pred c-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH-HhcCCchhh-HHHHHHHHHHHhcCCHH
Confidence 2 235567889999999999998888777653 2233333111 000111111 12444577888999999
Q ss_pred HHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHhccccccccc---CCCCCee-EEEEcch
Q 002071 438 VKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNIIGEEYFNILATRSFFQEFKK---DDDNRII-ECKMHDI 513 (973)
Q Consensus 438 ~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~---~~~~~~~-~~~~Hdl 513 (973)
.+..+-..|++- -.|+.+.|...|-. .....+....+.|....++...+. ....... +-..|+.
T Consensus 310 t~~Vl~~AA~iG--~~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIG--NRFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhC--ccCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999999999985 45666666666521 334555555666665555532211 1111111 1146777
Q ss_pred HHHHH
Q 002071 514 VHDFA 518 (973)
Q Consensus 514 v~d~a 518 (973)
+++.|
T Consensus 378 vqqaa 382 (849)
T COG3899 378 VQQAA 382 (849)
T ss_pred HHHHH
Confidence 77766
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=4.6e-09 Score=109.97 Aligned_cols=312 Identities=17% Similarity=0.133 Sum_probs=158.7
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecCCC-cc--ccchhhhccccccEEecCCCCCCcccC-c-cccCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQS-IE--KLPETLCELYNLQKLDVSDCYGLKELP-Q-GIGKL 672 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~-i~--~Lp~~i~~L~~Lq~L~L~~~~~~~~lp-~-~i~~L 672 (973)
..||.|.+.++.- .....+-..-.+++++..|++.+|. |+ .+-+.-..+.+|++|++..|..+...- . -...+
T Consensus 138 g~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 3577777877422 1122232334467777777777775 33 122223457788888888876554421 1 22357
Q ss_pred CCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc
Q 002071 673 VNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL 752 (973)
Q Consensus 673 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l 752 (973)
++|.+|++++|..+.. .+ ++.+ ...++.++.+-..+|...+ .+++...-
T Consensus 216 ~kL~~lNlSwc~qi~~--~g------v~~~------------------~rG~~~l~~~~~kGC~e~~-----le~l~~~~ 264 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG--NG------VQAL------------------QRGCKELEKLSLKGCLELE-----LEALLKAA 264 (483)
T ss_pred hhHHHhhhccCchhhc--Cc------chHH------------------hccchhhhhhhhccccccc-----HHHHHHHh
Confidence 7888888888854332 11 1100 1111222222111221110 01111111
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCc-c-ccccCccEEEEecCCCCCc
Q 002071 753 DKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGW-M-MPLTNLRSLTLEKCEKCKQ 830 (973)
Q Consensus 753 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~-~-~~l~~L~~L~L~~~~~~~~ 830 (973)
..+.-+..+++..+...+ ++.+...-..+..|+.|..+++...+..+-| + .+.++|+.|.+..|+...+
T Consensus 265 ~~~~~i~~lnl~~c~~lT---------D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLT---------DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred ccChHhhccchhhhcccc---------chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh
Confidence 122222333333331111 1222222223445666666665543322222 1 1567777777777764433
Q ss_pred CC--CC-CCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccC
Q 002071 831 IP--PL-GKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISC 907 (973)
Q Consensus 831 l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c 907 (973)
.- .+ .+.+.|+.+.+.+|..+... .+.. ....+|.|++|.++.|.....-.. .........+..|+.|++.+|
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~s-ls~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDG--TLAS-LSRNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhh--hHhh-hccCCchhccCChhhhhhhhhhhh-hhhhhccccccccceeeecCC
Confidence 22 23 35677777777776533211 1111 122677788887776654432200 000122346788999999999
Q ss_pred ccCC-CCCCCCCCCCCcceEEEccCCCcccc-ccCccccccccccceeeecCCCc
Q 002071 908 PKLK-ALPDHFHQMTTLKELYILGCAIPGVR-FRNGKQEDLISQRANVYSREYDL 960 (973)
Q Consensus 908 ~~l~-~lp~~l~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~i~~~p~i~~~~~~~ 960 (973)
|.++ ..-..+..+++|+.+++.+|...... +.. -..|+|++.++.+..
T Consensus 412 p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~-----~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 412 PLITDATLEHLSICRNLERIELIDCQDVTKEAISR-----FATHLPNIKVHAYFA 461 (483)
T ss_pred CCchHHHHHHHhhCcccceeeeechhhhhhhhhHH-----HHhhCccceehhhcc
Confidence 9876 23335667899999999999754322 222 568899999886443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-08 Score=104.74 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=79.4
Q ss_pred CCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCC--cCC
Q 002071 755 MKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCK--QIP 832 (973)
Q Consensus 755 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~ 832 (973)
+++|+.|.|+.|+.. ..++...+..+|+|+.|.+.+|.+....-.....+..|+.|+|++|.+.. ..+
T Consensus 196 l~~lK~L~l~~CGls----------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLS----------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred hhhhheEEeccCCCC----------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc
Confidence 355666666666542 24455556667788888888775322112222356678888888887543 245
Q ss_pred CCCCcCcccceeccccccceeeCcccc--cccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccC
Q 002071 833 PLGKLSSLEKLMIWGLKSVKRVANEFL--GIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISC 907 (973)
Q Consensus 833 ~l~~l~~L~~L~L~~~~~l~~~~~~~~--~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c 907 (973)
..+.||.|..|++..|. +..+..--. ......||+|+.|.+... +..+|.. .......++|+.|.+..+
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~s----l~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRS----LNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC-ccccccc----cchhhccchhhhhhcccc
Confidence 57888888888887643 221110000 011136888888887765 3444554 334445677777776544
No 45
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.51 E-value=2.6e-05 Score=92.06 Aligned_cols=203 Identities=18% Similarity=0.137 Sum_probs=121.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC---ceEEEEEeCcc---ccHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF---DKILWVCVSEA---FEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~~~ 256 (973)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999988887432 34579999999999999999998754333332 12345544321 12222
Q ss_pred HHHH---------------HHHHhcCCC----------------CCCCc-HHHHHHHHHHHhcCCcEEEEEecCCCCCcc
Q 002071 257 IARA---------------IVEALDVSS----------------SGLGE-FQSLLKTISKSITGKRFFLVLDDVWDGDYM 304 (973)
Q Consensus 257 ~~~~---------------i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~ 304 (973)
+... .+...+... ++... ....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 2111 111111110 00111 123567888899999999998888887777
Q ss_pred ChhhHHhhhcCCCCCcEEEE--EcCChHH-HHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHH
Q 002071 305 KWEPFYHCLKNGLPESKILV--TTRKESV-AFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAG 380 (973)
Q Consensus 305 ~w~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 380 (973)
.|+.+...+..+.+...|++ ||++... ... ......+.+.+++.+|.++++.+.+..... ... .++...|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 88888877777666655665 5654331 111 122346789999999999999987643211 111 234444555
Q ss_pred hcCCchHHHHHHHhh
Q 002071 381 KCRGLPLTTKAIGSL 395 (973)
Q Consensus 381 ~c~GlPLai~~~~~~ 395 (973)
.+..-+-|+..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 554445555555444
No 46
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.9e-06 Score=92.33 Aligned_cols=190 Identities=15% Similarity=0.176 Sum_probs=111.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+.-....... ..++..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999998888542 2356789999999999999999976321110000 00000000011111
Q ss_pred HHhcC-----CCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HH
Q 002071 263 EALDV-----SSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SV 331 (973)
Q Consensus 263 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v 331 (973)
..... ........++.. .+.+.+ .+++-++|+|++...+...++.+...+.......++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 10000 000001122221 111111 2456699999998876666777877777665667777776543 33
Q ss_pred HHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 332 AFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
... .+....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.|-.+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 322 223568999999999999988876644322111 345677899999988533
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.5e-06 Score=91.73 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=118.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch----hhhccCceEEEEEe-CccccHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND----EVNRKFDKILWVCV-SEAFEEFRI 257 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-s~~~~~~~~ 257 (973)
.+++|-+..++.+...+... .-.+...++|+.|+||||+|+.++..- ....|+|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789888889998888532 245678899999999999999987631 12456676666542 22222222
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHH-H-Hh
Q 002071 258 ARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVA-F-MM 335 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~ 335 (973)
.+++.+.+... -..+++-++|+|+++..+...|+.+...+.....++.+|++|.+.+.. . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 123567788888887777778999999998877889999888665421 1 12
Q ss_pred CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 336 GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 336 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
.....+.+.++++++....+.+...+ . . .+.+..++..++|.|..+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-~---~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-I---K----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-C---C----HHHHHHHHHHcCCCHHHHHH
Confidence 23568999999999998888665321 1 1 23356788999999875543
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=6.3e-07 Score=102.43 Aligned_cols=201 Identities=19% Similarity=0.150 Sum_probs=118.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+...+.+..++... .-.+.+.++|++|+||||+|+.+++.....+.+....|.|.+... +......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 46899998888888887543 235677999999999999999998743222223223343322100 000000000
Q ss_pred HHhcCCCCCCCcHHH---HHHHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC-ChHHHHHh-C
Q 002071 263 EALDVSSSGLGEFQS---LLKTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR-KESVAFMM-G 336 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~ 336 (973)
..+.. ......+. +.+.+.. -..+++-++|||+++..+...++.+...+......+.+|++|. ...+...+ .
T Consensus 88 ~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000 01112222 2222221 1235677999999987766677888888776555556665554 33333222 3
Q ss_pred CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHhh
Q 002071 337 STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGSL 395 (973)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 395 (973)
....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-..
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3568999999999999999987754332222 4556889999999885 44444333
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=9.7e-08 Score=92.33 Aligned_cols=128 Identities=24% Similarity=0.300 Sum_probs=47.8
Q ss_pred CCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhh
Q 002071 566 RIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETL 645 (973)
Q Consensus 566 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i 645 (973)
+..++|.|.+.++.+.. +...-..+.+|++|+|++|.+ ..++ .+..+++|+.|++++|.|+.++..+
T Consensus 17 n~~~~~~L~L~~n~I~~-------Ie~L~~~l~~L~~L~Ls~N~I-----~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-------IENLGATLDKLEVLDLSNNQI-----TKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS-------S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccc-------ccchhhhhcCCCEEECCCCCC-----cccc-CccChhhhhhcccCCCCCCccccch
Confidence 44567888888876521 222122567889999999544 3443 4667889999999999998887655
Q ss_pred -hccccccEEecCCCCCCcccC--ccccCCCCcceeecCCCCCCCccc----ccCCCccccccCCeeeeC
Q 002071 646 -CELYNLQKLDVSDCYGLKELP--QGIGKLVNMKHLLDDKTDSLGHMP----VGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 646 -~~L~~Lq~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~~~ 708 (973)
..+++|++|++++|. +..+- ..+..+++|++|++.+|+.... + ..+..+++|+.|+...+.
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence 468999999999887 65543 3466788899999988865322 2 124556666666644443
No 50
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=3.1e-07 Score=92.12 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=32.8
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND 234 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (973)
.|+||+++.+++...|. .. .....+++.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995 22 23457999999999999999999998843
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=8.5e-09 Score=111.87 Aligned_cols=102 Identities=35% Similarity=0.541 Sum_probs=77.6
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..|-.|..|.|.. +.+..+|..+++|..|.||+|+.|++..+|..++.| -|++|.+++|+ +..+|..++.+.
T Consensus 94 ~~~f~~Le~liLy~-----n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNk-l~~lp~~ig~~~ 166 (722)
T KOG0532|consen 94 ACAFVSLESLILYH-----NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNK-LTSLPEEIGLLP 166 (722)
T ss_pred HHHHHHHHHHHHHh-----ccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCc-cccCCcccccch
Confidence 55566677777777 455567888888888888888888888888888766 47888888887 888888888888
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCC
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
+|.+|+.+.|. +..+|..++.+++|+.|.
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHH
Confidence 88888888773 356666677776666664
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.2e-05 Score=92.96 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=116.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhc-------------------cCceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNR-------------------KFDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 243 (973)
.+++|.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...... .|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 46899999999999988532 2356677999999999999998876321111 11112
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCC
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPE 319 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~g 319 (973)
+++..+.. ...+++.+.+... ..++.-++|||+++..+...|+.++..+..-...
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222211 1222222222211 1345668899999988777788888888766667
Q ss_pred cEEEEEcCChH-HHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch-HHHHHHHh
Q 002071 320 SKILVTTRKES-VAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP-LTTKAIGS 394 (973)
Q Consensus 320 s~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 394 (973)
.++|+||++.. +... ..-+..+++.+++.++..+.+.+.+...+...+ .+....|++.++|.. -|+..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88888777643 3212 233568999999999999999887644332222 455678999998866 45555433
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=2.2e-08 Score=102.75 Aligned_cols=260 Identities=20% Similarity=0.207 Sum_probs=139.0
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc-------ccCCCCCcEEEecCCC
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN-------VKRLVHLRYLNLSHQS 637 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~-------i~~L~~L~~L~Ls~~~ 637 (973)
.....+..+.++|+.+.... -.+....+.+.+.||+-+++. .+++....++|.. +-.+++|++||||.|-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34556666777776652111 123344466666777777775 2333333344432 2234466666666665
Q ss_pred cc-----ccchhhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCC
Q 002071 638 IE-----KLPETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGG 711 (973)
Q Consensus 638 i~-----~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 711 (973)
+. .+-..|.++..|++|.|.+|. +...-. .++. .|.+|. ....++.-+.|+++....+...+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccc
Confidence 43 222334555666666666554 321110 0000 011111 00112333455555433333322
Q ss_pred CCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCC
Q 002071 712 GVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPL 791 (973)
Q Consensus 712 ~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 791 (973)
..-..+...+...+.|+.+++..+... +....+....+..+++|+.|+|..|.++.. .....-..++.++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~e-------gs~~LakaL~s~~ 241 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLE-------GSVALAKALSSWP 241 (382)
T ss_pred ccHHHHHHHHHhccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhH-------HHHHHHHHhcccc
Confidence 111112223455566666665555432 222245566778899999999998876432 3344556777788
Q ss_pred CccEEEEeeecCCCC----CCCccc-cccCccEEEEecCCCCCc----C-CCCCCcCcccceeccccc
Q 002071 792 NLKELLIGLYRGNTV----FPGWMM-PLTNLRSLTLEKCEKCKQ----I-PPLGKLSSLEKLMIWGLK 849 (973)
Q Consensus 792 ~L~~L~L~~~~~~~~----lp~~~~-~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~L~~~~ 849 (973)
+|+.|+++.|.+... +-..+. ..++|+.|.+.+|.+... + -.+...|.|+.|+|++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999999887651 111111 578899999999876542 1 115568999999998844
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=2.4e-07 Score=95.54 Aligned_cols=90 Identities=21% Similarity=0.123 Sum_probs=62.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc--ccHHHHHHHHHHHhcCCCCCCCcHH------HHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA--FEEFRIARAIVEALDVSSSGLGEFQ------SLLKT 281 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 281 (973)
-..++|+|.+|+|||||+++++++.... +|+.++|+++... +++.++++.|...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999975443 8999999998776 7999999999433322222211111 12222
Q ss_pred HHHH-hcCCcEEEEEecCCC
Q 002071 282 ISKS-ITGKRFFLVLDDVWD 300 (973)
Q Consensus 282 l~~~-l~~kr~LlVlDdvw~ 300 (973)
.... -++++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 258999999999943
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.1e-07 Score=107.90 Aligned_cols=183 Identities=31% Similarity=0.362 Sum_probs=123.3
Q ss_pred HhhcccccEEEecccccccccccccCccccCCC-CCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLV-HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKL 672 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~-~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L 672 (973)
...+..+..|++.+ ..+.++|..++.+. +|++|++++|.+..+|..+..+++|+.|++++|. +..+|...+.+
T Consensus 112 ~~~~~~l~~L~l~~-----n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDN-----NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNL 185 (394)
T ss_pred hhcccceeEEecCC-----cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhh
Confidence 44557899999998 55666888888885 9999999999999998889999999999999998 88899877789
Q ss_pred CCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc
Q 002071 673 VNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL 752 (973)
Q Consensus 673 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l 752 (973)
++|+.|++++| .+..+|..++.+..|++|.+..+.... ....+..+.++..|.
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~--------------------- 238 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLE--------------------- 238 (394)
T ss_pred hhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccc---------------------
Confidence 99999999988 446777766666667777654432110 011222222222222
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCC
Q 002071 753 DKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIP 832 (973)
Q Consensus 753 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 832 (973)
+..+... .....+..+++++.|++++|.+.. ++. +..+.+|+.|+++++.....+|
T Consensus 239 ----------l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 239 ----------LSNNKLE------------DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ----------cCCceee------------eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 2111110 002234445667777777777766 554 6677778888887776655444
Q ss_pred C
Q 002071 833 P 833 (973)
Q Consensus 833 ~ 833 (973)
.
T Consensus 295 ~ 295 (394)
T COG4886 295 L 295 (394)
T ss_pred h
Confidence 3
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.44 E-value=4.4e-06 Score=92.68 Aligned_cols=195 Identities=13% Similarity=0.070 Sum_probs=109.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCc-eEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFD-KILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 46899999999998888432 334578999999999999999987321 12222 2344444331100 00000
Q ss_pred H------HHhcCC-CCCCCcHHHHHHHHHH---Hh--cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 262 V------EALDVS-SSGLGEFQSLLKTISK---SI--TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 262 ~------~~l~~~-~~~~~~~~~~~~~l~~---~l--~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
. ..++.. .......+.....++. .. .+.+-+||+||+..........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 0000111111111211 11 2445589999997654444555666665544557788777543
Q ss_pred H-HHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 330 S-VAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 330 ~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
. +...+ .....+.+.+++.++...++.+.+...+.... .+....+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 2 22222 22457889999999999999887644332222 4566778888988775443
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.5e-06 Score=83.44 Aligned_cols=125 Identities=17% Similarity=0.121 Sum_probs=74.8
Q ss_pred ecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHh
Q 002071 186 CGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEAL 265 (973)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (973)
+|++..++.+...+... ..+.+.|+|.+|+||||+++.+++.. ...-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888888988888542 34688999999999999999999842 2222456677665544332221111100
Q ss_pred cCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC------CCCcEEEEEcCChH
Q 002071 266 DVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG------LPESKILVTTRKES 330 (973)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~------~~gs~iivTtr~~~ 330 (973)
............+..++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864222233344444332 35778888887654
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.9e-08 Score=101.89 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=102.4
Q ss_pred CcceEEEEEEccCCCCCC--ccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGAPFP--ISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
.+++|.+++........+ .....|+++|.|+++.+-+.. -.....+...+++|+.|+|+.|.+.. ...+. .
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s~--~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPSLENLNLSSNRLSN-FISSN--T 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhcccchhcccccccccC-Ccccc--c
Confidence 567777888777655433 245689999999999876521 12245567889999999999976542 11111 1
Q ss_pred ccCCCCCcEEEecCCCcc--ccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCccc--ccCCCcc
Q 002071 622 VKRLVHLRYLNLSHQSIE--KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMP--VGIGRLT 697 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~--~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~ 697 (973)
-..+.||+.|.|+.|.++ .+..-.-.+++|+.|+|..|..+........-++.|+.|+|++|+.+ ..+ ..++.++
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence 236788999999999887 34444567789999999988533322223345678899999988553 333 3356666
Q ss_pred ccccCCeee
Q 002071 698 SLRTLVEFH 706 (973)
Q Consensus 698 ~L~~L~~~~ 706 (973)
.|..|.+..
T Consensus 272 ~L~~Lnls~ 280 (505)
T KOG3207|consen 272 GLNQLNLSS 280 (505)
T ss_pred chhhhhccc
Confidence 666665443
No 59
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=8e-06 Score=87.84 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=106.7
Q ss_pred cccCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHH
Q 002071 178 SFIDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 178 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (973)
.+.+...|+||+.+..++...|...+. ...+++.|+|++|+|||||++.+..... + ..++++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHH
Confidence 445567899999999999999865432 2346999999999999999999986321 1 12222222 67999
Q ss_pred HHHHHHHhcCCCCCCC--cHHHHHHHHHHHh-c-CCcEEEEEecCCCCCcc-ChhhHHhhhcCCCCCcEEEEEcCChHHH
Q 002071 258 ARAIVEALDVSSSGLG--EFQSLLKTISKSI-T-GKRFFLVLDDVWDGDYM-KWEPFYHCLKNGLPESKILVTTRKESVA 332 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~~-~w~~l~~~l~~~~~gs~iivTtr~~~v~ 332 (973)
++.|+.+++.+..... -.+.+.+.+.+.- . +++.+||+-=-...+.. .+.+. ..|.....-++|++---.+...
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 9999999997432221 1233333333322 3 77788887543222111 11111 2244445567788766554433
Q ss_pred HHh---CCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 333 FMM---GSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 333 ~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
-.. .--+.|.+..++.++|.++-.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 221 224588999999999998877653
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.5e-06 Score=97.71 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=114.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc-------------------CceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK-------------------FDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 243 (973)
.+++|-+..++.+.+.+... .-.+.+.++|..|+||||+|+.+++.-..... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 46899999999988888532 23456689999999999999999874211100 1111
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEE
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKI 322 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~i 322 (973)
+++..+....+ .+..++.+.+.. -..+++-++|||++.......++.++..+..-....++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22211111111 112222222211 12467889999999888777788888877665556676
Q ss_pred EEEcCC-hHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 323 LVTTRK-ESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 323 ivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
|++|.+ ..+... ......|++.+++.++..+++.+.+-..+.... .+....|++.++|.|--+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e----deAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE----AEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 666654 333322 233578999999999999999886643221111 4556789999999885333
No 61
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=1.4e-06 Score=80.96 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=80.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
-+++.|.|+.|+|||||+++++.+.. ....++|+++.+......... + ..+.+.+...++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 36899999999999999999987422 335677887766543211100 0 223333334447
Q ss_pred cEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHH------hCCCCeeeCCCCCHHHH
Q 002071 290 RFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFM------MGSTDIIPVQELAEEEC 351 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 351 (973)
+.+|+||++... ..|......+.+..+..+|++|+.+...... .|....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 888999999765 4687777777665567899999987765532 12234778999987764
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.3e-06 Score=93.79 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=114.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+...+.+..++... .-.+.+.++|..|+||||+|+.+++...... |+.. .++..-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 46999999999999988543 2357889999999999999998876311100 1100 0111001111111
Q ss_pred HHhc-----CCCCCCCcHHHHHHHHHH----HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHH
Q 002071 263 EALD-----VSSSGLGEFQSLLKTISK----SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVA 332 (973)
Q Consensus 263 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~ 332 (973)
..-. .........++..+.+.. -..+++-++|||++...+...++.+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 000001122222222211 123667789999998877667777888777655667788777653 222
Q ss_pred -HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 333 -FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 333 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
........+++.+++.++..+.+.+.+...+.... .+....|++.++|.+-.+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22234578999999999999998887654332222 445677999999988533
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.5e-05 Score=85.54 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=133.0
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ce-EEEEEeCccccHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DK-ILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~s~~~~~~~~~~ 259 (973)
+..+.+|+.+++++...|.+.-. +....-+.|+|.+|.|||+.++.|.+ ++.... .. +++|++-...+...++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34499999999999998876543 22333499999999999999999998 344433 12 79999999999999999
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhc--CCcEEEEEecCCCCCccChhhHHhhhcCCC-CCcEEE--EEcCChHHHHH
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSIT--GKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-PESKIL--VTTRKESVAFM 334 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-~gs~ii--vTtr~~~v~~~ 334 (973)
.|+++++..+.......+..+.+.+.+. ++.+++|||++..-....-+.+...+.... ..++|+ ..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997544444556666777777774 689999999997643222244555554432 245443 33444333333
Q ss_pred hCC-------CCeeeCCCCCHHHHHHHHHHHhccC--CCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 335 MGS-------TDIIPVQELAEEECWLLFNRIAFFG--RPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 335 ~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
+.. ...+...|=+.+|-...+..++-.. .....+..++-++...++..|-.=.||..+
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 221 2246788889999999988876532 111222233333343444444444555544
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=7.5e-08 Score=96.23 Aligned_cols=211 Identities=21% Similarity=0.202 Sum_probs=109.8
Q ss_pred cchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccC
Q 002071 641 LPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACR 720 (973)
Q Consensus 641 Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 720 (973)
+|-.+.-+++|.++.+++|. .+.+-.-...-+.|+.+.+.+.. +...| .+-.++.+..+.... .....+.....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~~-~l~pe~~~~D~~~~E---~~t~~G~~~~~ 279 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDVP-SLLPETILADPSGSE---PSTSNGSALVS 279 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-ccccc-cccchhhhcCccCCC---CCccCCceEEe
Confidence 44445566677777777765 33333222233456666665442 12222 122222222221110 11111111223
Q ss_pred cccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEee
Q 002071 721 LESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGL 800 (973)
Q Consensus 721 l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~ 800 (973)
+...+.|+.|+++++..... ...+.-.+.++.|.++.|.... ...+..+++|+.|+|++
T Consensus 280 ~dTWq~LtelDLS~N~I~~i--------DESvKL~Pkir~L~lS~N~i~~-------------v~nLa~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI--------DESVKLAPKLRRLILSQNRIRT-------------VQNLAELPQLQLLDLSG 338 (490)
T ss_pred cchHhhhhhccccccchhhh--------hhhhhhccceeEEeccccceee-------------ehhhhhcccceEeeccc
Confidence 34455666666666543211 1123345666777777665432 22355567777777777
Q ss_pred ecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccccc
Q 002071 801 YRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEF 880 (973)
Q Consensus 801 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l 880 (973)
|.++. +-.|-..+.|++.|.|..|.+ +.+..+++|-+|..|++.+ |. +
T Consensus 339 N~Ls~-~~Gwh~KLGNIKtL~La~N~i-E~LSGL~KLYSLvnLDl~~--------N~----------------------I 386 (490)
T KOG1259|consen 339 NLLAE-CVGWHLKLGNIKTLKLAQNKI-ETLSGLRKLYSLVNLDLSS--------NQ----------------------I 386 (490)
T ss_pred chhHh-hhhhHhhhcCEeeeehhhhhH-hhhhhhHhhhhheeccccc--------cc----------------------h
Confidence 77666 666666777777777777743 4456666666677666654 11 1
Q ss_pred ccccccccCCCccCcccccceeeeccCccCCCCCC
Q 002071 881 EEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD 915 (973)
Q Consensus 881 ~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~ 915 (973)
+..+. ....+.+|+|+.|.+.+|| +..+|+
T Consensus 387 e~lde----V~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 387 EELDE----VNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred hhHHH----hcccccccHHHHHhhcCCC-ccccch
Confidence 11111 2345678888888888887 444554
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.39 E-value=1.6e-08 Score=109.81 Aligned_cols=168 Identities=21% Similarity=0.295 Sum_probs=132.0
Q ss_pred EEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCC
Q 002071 549 HLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHL 628 (973)
Q Consensus 549 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L 628 (973)
.+.++.+....+|..++.+..|.++.+..+.+ .. .+....++..|.+|||+. +.+..+|..++.|+ |
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~------r~-ip~~i~~L~~lt~l~ls~-----NqlS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCI------RT-IPEAICNLEALTFLDLSS-----NQLSHLPDGLCDLP-L 145 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccc------ee-cchhhhhhhHHHHhhhcc-----chhhcCChhhhcCc-c
Confidence 34455555566788888888899998887764 33 344478899999999999 55667899998886 9
Q ss_pred cEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeC
Q 002071 629 RYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 629 ~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 708 (973)
+.|-+++|+++.+|..|+.+..|..||.+.|. +..+|..++.+.+|+.|.+..|+ +..+|..++.| .|..|++.++.
T Consensus 146 kvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 146 KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred eeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCc
Confidence 99999999999999999999999999999998 99999999999999999999885 46788877744 46667655554
Q ss_pred CCCCCCCCCccCcccccCCCccCceeeec
Q 002071 709 GGGGVGGSNACRLESLKNLELLHVCGIRR 737 (973)
Q Consensus 709 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 737 (973)
... +|..|.++++|+.|.+-+|..
T Consensus 223 is~-----iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 223 ISY-----LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eee-----cchhhhhhhhheeeeeccCCC
Confidence 433 466777778887777665543
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=98.38 E-value=3.2e-05 Score=89.42 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=137.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..++++.+|+..... ....+.+.|+|++|+||||+|+.+++.. .|+ .+-+++++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 5699999999999999864321 1226789999999999999999998842 132 2333444433222 222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc----cChhhHHhhhcCCCCCcEEEEEcCCh-HHHH-H-h
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY----MKWEPFYHCLKNGLPESKILVTTRKE-SVAF-M-M 335 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~-~-~ 335 (973)
....... .....++-+||||+++.... ..+..+...+.. .+..||+|+.+. .... . -
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221100 01113678999999976432 234556555553 234466666432 1111 1 1
Q ss_pred CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCC-C--CHHHHHHHHhhh
Q 002071 336 GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSK-K--TEEEWQRILSSE 412 (973)
Q Consensus 336 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~-~--~~~~w~~~~~~~ 412 (973)
.....+.+.+++.++....+.+.+...+.... .++...|++.++|-.-.+......+... . +.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23567899999999999888877654332222 4556889999999776544333333322 1 3333333321
Q ss_pred hhhhhhhcccchhhhhhhcc-CCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCC
Q 002071 413 LWKIEEIEKGVLTPLWLSYN-DLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVE 472 (973)
Q Consensus 413 ~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~ 472 (973)
.+....++.++..-+. .-+......+..+ .++- +.+-.|+.|.+....
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhcccccc
Confidence 1112335555554433 2222222222211 1222 457789999987653
No 67
>PRK08727 hypothetical protein; Validated
Probab=98.38 E-value=1.3e-05 Score=83.04 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=90.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
..+.|+|..|+|||+|++.+++. .......+.|+++.+ ....+. +.+ +.+ .+-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 45999999999999999999884 333334566776432 111111 111 111 223
Q ss_pred EEEEEecCCCCC-ccChhh-HHhhhcC-CCCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHHHH
Q 002071 291 FFLVLDDVWDGD-YMKWEP-FYHCLKN-GLPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 291 ~LlVlDdvw~~~-~~~w~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
-+|||||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 123432 3332222 13466799999853 22233445678999999999999999987
Q ss_pred hccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 359 AFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
+...+-... .++..-|++.+.|-.-.+
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 754322122 455677888887665433
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=1.2e-05 Score=88.36 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=106.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe--CccccHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV--SEAFEEFRIARA 260 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~ 260 (973)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+.+.. ....+.. .++.+ +...... ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHH
Confidence 46899999999999988432 34457999999999999999998742 1112211 22222 2221111 1111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-HHH-HhCCC
Q 002071 261 IVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-VAF-MMGST 338 (973)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~ 338 (973)
.+..+....+ .....+-++++|++.......+..+...+......+.+|+++.... +.. .....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 0013456899999876544455667776665555677777764321 111 11223
Q ss_pred CeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHH
Q 002071 339 DIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLT 388 (973)
Q Consensus 339 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 388 (973)
..+++.+++.++....+.+.+...+..-. .+....+++.++|.+--
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRK 199 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 47899999999998888887654332222 44567889999998854
No 69
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.1e-05 Score=92.55 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=115.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh-------------------hccCceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV-------------------NRKFDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 243 (973)
.+++|-+..++.+...+... ...+.+.++|+.|+||||+|+.+++.-.- .+.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999998888532 23566889999999999999999763110 0112222
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEE
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKI 322 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~i 322 (973)
+++.......++ +..++.+.+... ..+++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 333222211111 122222222211 2466779999999887777788888888776566666
Q ss_pred EEEcC-ChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHh
Q 002071 323 LVTTR-KESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGS 394 (973)
Q Consensus 323 ivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 394 (973)
|++|. ...+... ......+++.+++.++....+.+.+...+...+ .+....|++.++|.+- |+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 65554 3333322 233578999999999988888775543221111 4445778999999774 5555443
No 70
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=1.1e-07 Score=91.84 Aligned_cols=105 Identities=25% Similarity=0.317 Sum_probs=35.5
Q ss_pred HhhcccccEEEecccccccccccccCcccc-CCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCcccc-C
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVK-RLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIG-K 671 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~-~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~-~ 671 (973)
+.+...+|.|+|.+|.+ ..+ ..++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..++..+. .
T Consensus 15 ~~n~~~~~~L~L~~n~I-----~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI-----STI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKN 86 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH
T ss_pred ccccccccccccccccc-----ccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHh
Confidence 34455789999999554 333 3455 5789999999999999886 48889999999999998 888866554 6
Q ss_pred CCCcceeecCCCCCCCccc--ccCCCccccccCCeeee
Q 002071 672 LVNMKHLLDDKTDSLGHMP--VGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 672 L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 707 (973)
+++|++|++++|... .+- ..+..+++|+.|++..+
T Consensus 87 lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 87 LPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCC
Confidence 899999999988542 211 22344555555554433
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.8e-05 Score=90.09 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=113.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCce-EEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDK-ILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|-+..+..+...+... .-.+.+-++|+.|+||||+|+.+++.-........ -.+..+.. -.....|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHHH
Confidence 46899999888888776432 23467889999999999999999774211111000 00000000 0001111
Q ss_pred HHHhc-----CCCCCCCcHHHHHHHHHH----HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEE-EcCChHH
Q 002071 262 VEALD-----VSSSGLGEFQSLLKTISK----SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILV-TTRKESV 331 (973)
Q Consensus 262 ~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iiv-Ttr~~~v 331 (973)
..... .........+++.+.+.. -+.+++-++|+|+++..+...|+.+...+....+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 10000 000011122232222221 1246778999999998777788888888876656666665 4444455
Q ss_pred HHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 332 AFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
...+ .....+++.+++.++....+.+.+...+...+ .+....|++.++|.+-
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSAR 224 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 4433 33567999999999999999988754432222 3455778999999874
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.32 E-value=2.5e-05 Score=81.01 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=91.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|++|+|||+|++.+++. ....-..+.++++..... ...+..+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 357899999999999999999884 222334566776643110 001111111 11
Q ss_pred cEEEEEecCCCCCc-cChhh-HHhhhcCC-CCC-cEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGDY-MKWEP-FYHCLKNG-LPE-SKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFN 356 (973)
Q Consensus 290 r~LlVlDdvw~~~~-~~w~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (973)
--+|+|||+..... ..|+. +...+... ..| .++|+||+.. +....+.+..++++++++.++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 23789999965321 34543 33333221 133 4799998754 334446667899999999999999998
Q ss_pred HHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 357 RIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
+++...+- ..+ +++..-|++.+.|..-++.
T Consensus 178 ~~a~~~~~-~l~---~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 178 LRARLRGF-ELP---EDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhhcCCHHHHH
Confidence 86644321 111 5667778888887665443
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=91.50 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=113.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.++||-+..++.+.+.+... .-.+.+.++|..|+||||+|+.+.+.-...+. +..--+ .++.+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 46899999999999988543 23567789999999999999998763211000 000000 000011011111111
Q ss_pred HH-----hcCCCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC-ChHHH
Q 002071 263 EA-----LDVSSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR-KESVA 332 (973)
Q Consensus 263 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr-~~~v~ 332 (973)
.. +..........+++.+.+... ..++.-++|||+++..+...++.++..+..-..+.++|++|. ...+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 000000112233333222221 246677999999998877778888777765445556555554 44443
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
.. ..-+..+.+..++.++..+.+.+.+...+...+ .+....|++.++|.|....
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 233578999999999999998876643222111 3445778999999996443
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.30 E-value=1.5e-05 Score=87.12 Aligned_cols=180 Identities=11% Similarity=0.048 Sum_probs=106.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCc-eEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFD-KILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|.+..++.+..++... ..+.+.++|++|+||||+|+.+++.. ....|. .++-+..++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 46889888888887776432 33446789999999999999998731 122232 12222222222221 12222
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHHHH-hCCCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVAFM-MGSTD 339 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~ 339 (973)
++.+...... .-.++.-+++||+++.......+.+...+......+++++++... .+-.. .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2211100000 002456799999998876555566666665545567777776543 22111 12245
Q ss_pred eeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 340 IIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 340 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
.+++.++++++....+...+...+-.-. .+....|++.++|-.-
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 7899999999999998887654332222 3456788899988764
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.6e-05 Score=90.22 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=114.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc-------------------CceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK-------------------FDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 243 (973)
.+++|.+.....+...+... .-.+.+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899988877777776432 23466899999999999999999763111100 0012
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEE
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKI 322 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~i 322 (973)
+.+..+.......+ +.|. +.... -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~-----------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIR-----------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHH-----------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 1111 11111 12356779999999765545556676666654444555
Q ss_pred EEEcCC-hHHHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHHHHHhhhcC-
Q 002071 323 LVTTRK-ESVAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTKAIGSLMRS- 398 (973)
Q Consensus 323 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l~~- 398 (973)
|++|.+ ..+...+ .....+.+.+++.++....+.+.+...+.... .++...|++.++| ++.|+..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 544443 4443332 33568899999999998888887654332222 3456778887754 56777776554321
Q ss_pred --CCCHHHHHHHH
Q 002071 399 --KKTEEEWQRIL 409 (973)
Q Consensus 399 --~~~~~~w~~~~ 409 (973)
+-+.+....++
T Consensus 227 ~~~It~e~V~~~l 239 (472)
T PRK14962 227 EGKITLETVHEAL 239 (472)
T ss_pred CCCCCHHHHHHHH
Confidence 12555555544
No 76
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.29 E-value=1.5e-06 Score=92.47 Aligned_cols=244 Identities=22% Similarity=0.245 Sum_probs=161.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
..+.+.++|.|||||||++-.+.. +...| +.+.+|....-.+...+.-.....++..... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 568999999999999999998876 56677 5677777777667766666666666654322 1223344556677
Q ss_pred CCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhCCCCeeeCCCCCHH-HHHHHHHHHhccCCCc-
Q 002071 288 GKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMGSTDIIPVQELAEE-ECWLLFNRIAFFGRPI- 365 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 365 (973)
++|.++|+||..+.- +.-..+...+..+.+.-.|+.|+|.... ........+.+|+.. ++-++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 889999999985431 1222333444455555677888875432 234456677777765 7888988776543322
Q ss_pred ccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhh-------cccchhhhhhhccCCchHH
Q 002071 366 EECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQRILSSELWKIEEI-------EKGVLTPLWLSYNDLPSRV 438 (973)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~~sy~~L~~~~ 438 (973)
.-...-.....+|.++..|.|++|...++..++- ...+....++.....+.+. ....++.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122335667889999999999999999888764 3344444443332222221 2346778999999999999
Q ss_pred HHHHhhhcCcCCCceeCHHHHHHHHHHcC
Q 002071 439 KRCFSYCAVFPKDFNIEKERLITLWMAQG 467 (973)
Q Consensus 439 k~cfl~~~~fp~~~~i~~~~li~~wia~g 467 (973)
+--|.-++.|.-.+... ...|.+-|
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g 266 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAG 266 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcC
Confidence 99999999987765543 34455544
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.29 E-value=1.8e-05 Score=82.06 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=89.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
....+.|+|..|+|||+||+.+++... ... ....+++..+.... + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~~----------~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLLA----------F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHHH----------H------------------hhc-c
Confidence 345789999999999999999988421 222 23445544331100 0 111 2
Q ss_pred CcEEEEEecCCCCCccChhhHHhhhcCC-CCCc-EEEEEcCChHHHH--------HhCCCCeeeCCCCCHHHHHHHHHHH
Q 002071 289 KRFFLVLDDVWDGDYMKWEPFYHCLKNG-LPES-KILVTTRKESVAF--------MMGSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 289 kr~LlVlDdvw~~~~~~w~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
..-+||+||+...+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347889999754332223454444321 2344 4667766433221 2333468899999998877776654
Q ss_pred hccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhh
Q 002071 359 AFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLM 396 (973)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 396 (973)
+-..+ ...+ +++...+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~-v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32222 1111 4566778888999998776655544
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=5.8e-06 Score=98.25 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=96.1
Q ss_pred CceecchhHHH---HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKN---ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
.+++|.+..+. .+.+.+.. .....+.++|++|+||||||+.+++. ...+|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 45888887664 34444432 24556789999999999999999873 334441 111110 0000
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh--cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEE--cCChH--HHH
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSI--TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVT--TRKES--VAF 333 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivT--tr~~~--v~~ 333 (973)
+..+......+.+ .+++.+|||||++.-+...++.+...+. .|+.++++ |.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111122222222 2567899999998765445555554443 35555554 33321 222
Q ss_pred H-hCCCCeeeCCCCCHHHHHHHHHHHhcc------CCCcccchhHHHHHHHHHHhcCCchH
Q 002071 334 M-MGSTDIIPVQELAEEECWLLFNRIAFF------GRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 334 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
. ......+.+++++.++...++.+.+-. .....- -.+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHH
Confidence 1 222468999999999999999876531 111111 14455778888887653
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.26 E-value=9.4e-06 Score=80.19 Aligned_cols=175 Identities=20% Similarity=0.246 Sum_probs=92.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+|||-+.-++.+.-++..... ..+.+.-+-.+|++|+||||||+-+++. ....|. +++.+. .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i---------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-I---------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-h----------
Confidence 5799998887776544432111 2346778999999999999999999884 333332 222211 0
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC--------CC-----------cEEE
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL--------PE-----------SKIL 323 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~--------~g-----------s~ii 323 (973)
....++...+.. + +++-+|.+|.++.-+...-+.+..+..++. ++ +-|=
T Consensus 87 ----------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 87 ----------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ----------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 011112222211 2 234567778887655444444554443321 11 2344
Q ss_pred EEcCChHHHHHhCCC--CeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 324 VTTRKESVAFMMGST--DIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 324 vTtr~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
-|||...+...+..- -+.+++..+.+|-.+...+.+..-+-. --.+.+.+|++.|.|-|--+.
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~----i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE----IDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E----E-HHHHHHHHHCTTTSHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHhcCCChHHHH
Confidence 677765554443332 245899999999999998876443322 226678999999999995443
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.25 E-value=2.3e-06 Score=91.78 Aligned_cols=102 Identities=20% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc--cHHHHHHHHHHHhcCCCC
Q 002071 193 NELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF--EEFRIARAIVEALDVSSS 270 (973)
Q Consensus 193 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~ 270 (973)
-++++.+..-. .-....|+|++|+||||||++||++.... +|+.++||.+.+.. ++.++++.|...+-.+..
T Consensus 157 ~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 35666665543 33467899999999999999999975444 89999999999887 778888887632222222
Q ss_pred CCCcHHH-----HHHHHHHH--hcCCcEEEEEecCCC
Q 002071 271 GLGEFQS-----LLKTISKS--ITGKRFFLVLDDVWD 300 (973)
Q Consensus 271 ~~~~~~~-----~~~~l~~~--l~~kr~LlVlDdvw~ 300 (973)
+...... ..-...++ -++++.+|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 2211111 11111222 268999999999943
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.6e-05 Score=89.33 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=113.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..++.+.+.+... ...+.+.++|+.|+||||+|+.+.+.-.-.. |... .++..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 46899999999999888542 2346788999999999999999876311111 2111 1111111112221
Q ss_pred HHhcC-----CCCCCCcHHHH---HHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC-ChHHH
Q 002071 263 EALDV-----SSSGLGEFQSL---LKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR-KESVA 332 (973)
Q Consensus 263 ~~l~~-----~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr-~~~v~ 332 (973)
..... ........+++ .+.+... ..+++-++|+|+++..+...++.+...+......+.+|++|. ...+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11100 00001122222 2211111 123455799999987766677788887766555566665554 33343
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHh
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGS 394 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 394 (973)
.. ......+++.++++++....+...+...+.... .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 233568999999999999888886643322111 3456788999999664 5544444
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.25 E-value=4.1e-05 Score=85.61 Aligned_cols=182 Identities=13% Similarity=0.138 Sum_probs=111.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh--------------------ccCce
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN--------------------RKFDK 242 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 242 (973)
.+++|.+..++.+.+.+... .-.+.+-++|++|+||||+|+.+...-.-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988532 234678899999999999998887531100 12222
Q ss_pred EEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcE
Q 002071 243 ILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESK 321 (973)
Q Consensus 243 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ 321 (973)
+++..+...... +..++.+.+... ..+++-++|+|++.......++.+...+......+.
T Consensus 89 -~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222221111111 111222221111 234566899999976554556677777755555667
Q ss_pred EEEEcCChH-HHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 322 ILVTTRKES-VAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 322 iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
+|++|.+.. +... ......+++.++++++..+.+...+-..+.... .+....+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 777765443 2222 223457889999999999998887644332111 456778899999998655443
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.3e-05 Score=91.25 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=114.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.++||-+..++.+.+.+... .-.+.+-++|..|+||||+|+.+++...-...+ .+.++..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 46899999999888888532 234567899999999999999997632111000 001111111222221
Q ss_pred HHhc-----CCCCCCCcHHHH---HHHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH
Q 002071 263 EALD-----VSSSGLGEFQSL---LKTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA 332 (973)
Q Consensus 263 ~~l~-----~~~~~~~~~~~~---~~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (973)
..-. .........++. .+.+.. -..+++-++|||+++..+....+.+...+..-....++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1000 000001122222 222211 12467789999999988777788888877665556666655554 4443
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAI 392 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 392 (973)
.. ..-+..+.+.+++.++..+.+.+.+-..+...+ .+....|++.++|.|- |+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 233678999999999999999876533222111 3445779999999886 44443
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=6.8e-06 Score=91.46 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=113.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..+..+..++... .-.+.+.++|+.|+||||+|+.+++.-.-. +... ...+..... .+.|.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHH
Confidence 46899998888888888543 124568999999999999999998731111 1000 000011111 11111
Q ss_pred HHhcC--------CCCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC-ChHHH
Q 002071 263 EALDV--------SSSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR-KESVA 332 (973)
Q Consensus 263 ~~l~~--------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr-~~~v~ 332 (973)
..... ...+..+..++.+.+... ..++.-++|+|++...+...++.+...+........+|++|. ...+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 11110 001111222233333221 245677999999998877778888777755444555554544 34443
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAI 392 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 392 (973)
.. ..-...|.+.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHHHHHH
Confidence 22 233568999999999999988887644332112 4556889999999984 44333
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=98.23 E-value=3.6e-05 Score=79.63 Aligned_cols=151 Identities=15% Similarity=0.208 Sum_probs=92.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... .. .+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 367899999999999999999873 322234567776532 1110 01 122223222
Q ss_pred cEEEEEecCCCCC-ccChhh-HHhhhcC-CCCCcEEEEEcCChH---------HHHHhCCCCeeeCCCCCHHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGD-YMKWEP-FYHCLKN-GLPESKILVTTRKES---------VAFMMGSTDIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 290 r~LlVlDdvw~~~-~~~w~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (973)
. +||+||+.... ...|+. +...+.. ...|..+|+|++... ....+....++++++++.++-.+.++.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899996432 234543 4444432 234677899887533 222334456889999999999999997
Q ss_pred HhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 358 IAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
++...+- .-+ .++..-|++.+.|..-++..
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHH
Confidence 6654321 111 46677788888877654433
No 86
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.6e-05 Score=87.61 Aligned_cols=200 Identities=14% Similarity=0.178 Sum_probs=114.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE-eCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC-VSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 261 (973)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+++.-.-...++...|.. +..++..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46899998888888887432 2345688999999999999999876321111111111110 01111111111111
Q ss_pred HHHhcCC-----CCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc-CChH
Q 002071 262 VEALDVS-----SSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT-RKES 330 (973)
Q Consensus 262 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt-r~~~ 330 (973)
....... .......+++.+ +.+.+ .+++-++|+|++.......|+.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1111000 001112333332 22222 3566788999998776667888888887666677766655 4334
Q ss_pred HHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHH
Q 002071 331 VAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAI 392 (973)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 392 (973)
+...+ .....+++.++++++..+.+...+-..+.... .+.+..|++.++|.+- |+..+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 43222 12357889999999998888876643222111 4567889999999885 44433
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.5e-05 Score=89.57 Aligned_cols=194 Identities=14% Similarity=0.167 Sum_probs=112.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~ 260 (973)
.++||-+..++.+.+++... .-.+.+-++|..|+||||+|+.+.+.-...+.. ...-. .++..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 46899888888888888543 235678899999999999999985521110000 00000 01111111112
Q ss_pred HHHHh-----cCCCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hH
Q 002071 261 IVEAL-----DVSSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ES 330 (973)
Q Consensus 261 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~ 330 (973)
|...- ..........++..+.+... ..++.-++|||+++..+...++.+...+..-....++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 21000 00000111222322222211 1345668999999988777778788777665556666655543 44
Q ss_pred HHH-HhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 331 VAF-MMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 331 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
+-. .......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 332 2344678999999999999999877644332222 345678889999988533
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.5e-05 Score=86.16 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=113.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh------------------h-hccCceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE------------------V-NRKFDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~-~~~F~~~ 243 (973)
.++||-+..++.+.+.+... .-.+.+-++|+.|+||||+|+.++..-. + .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46899998888887777432 2345789999999999999998865210 0 0111222
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEE
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKIL 323 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ii 323 (973)
+.+..+....+++ .++|++.... .-..+++-++|+|++...+....+.+...+..-.+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 1122221110 0013566789999998776666777888887666677777
Q ss_pred EEcCC-hHHHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 324 VTTRK-ESVAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 324 vTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
++|.. ..+...+ .....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66643 4444332 33578999999999999999887754433222 445678899999887533
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=1.8e-06 Score=102.73 Aligned_cols=93 Identities=25% Similarity=0.406 Sum_probs=73.3
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCcc-ccchhhhccccccEEecCCCCCCcccCccccCCCCcce
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE-KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKH 677 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~ 677 (973)
.++.|+|++|.+.+ .+|..+++|.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 36778888865543 46778888888888888888876 77888888888888888888755678888888888888
Q ss_pred eecCCCCCCCcccccCCC
Q 002071 678 LLDDKTDSLGHMPVGIGR 695 (973)
Q Consensus 678 L~l~~~~~~~~~p~~i~~ 695 (973)
|++++|.....+|..++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EECcCCcccccCChHHhh
Confidence 888888777777776654
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.5e-05 Score=92.16 Aligned_cols=196 Identities=11% Similarity=0.130 Sum_probs=112.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..++.+..++... .-.+.+.++|..|+||||+|+.+.+.-....... +. .+..-...+.|.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~----pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GE----PCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CC----CCcccHHHHHHh
Confidence 46999999999999998643 2356789999999999999998876311110000 00 000000000000
Q ss_pred HH-----hcCCCCCCCcHHHHHHHHHH----HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHH
Q 002071 263 EA-----LDVSSSGLGEFQSLLKTISK----SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVA 332 (973)
Q Consensus 263 ~~-----l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~ 332 (973)
.. +..........+.+.+.+.. -..+++-++|||++...+....+.+...+..-...+++|++|.+. .+-
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000011122222222211 123567799999998766555666777776544556777766543 222
Q ss_pred H-HhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHh
Q 002071 333 F-MMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGS 394 (973)
Q Consensus 333 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 394 (973)
. ..+....+.+.+++.++....+.+.+-..+...+ .+....|++.++|.+- |+..+-.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnLLDq 223 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSLLDQ 223 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 1233457889999999999999887654332222 4456889999999985 4444433
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.18 E-value=2.2e-05 Score=80.48 Aligned_cols=141 Identities=12% Similarity=0.170 Sum_probs=86.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
.+.+.|+|..|+|||+|++.+++.. ...|++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 3578999999999999999888632 11244321 111111111 111
Q ss_pred cEEEEEecCCCCCccChhhHHhhhcC-CCCCcEEEEEcCC---------hHHHHHhCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 290 RFFLVLDDVWDGDYMKWEPFYHCLKN-GLPESKILVTTRK---------ESVAFMMGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
-+|++||+.... ..-+.+...+.. ...|..||+|++. ++....+....++++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889996432 111233333322 1246679998874 3344456667899999999999999999887
Q ss_pred ccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 360 FFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
-...-.-. +++..-|++.+.|..-++..
T Consensus 167 ~~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 54322111 55667788888777765543
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.2e-05 Score=87.91 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=111.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh-------------------ccCceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN-------------------RKFDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 243 (973)
.++||-+..++.+.+++... .-.+.+-++|+.|+||||+|+.+.+.-.-. +.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 46899999999999999543 234567899999999999999887631111 111112
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEE
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKIL 323 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ii 323 (973)
+.+..+....++++ +++++.+.. .-..++.-++|+|+++..+....+.+...+..-...+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22322222222211 122221110 0123566789999998877777777888777665667777
Q ss_pred EEcCC-hHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 324 VTTRK-ESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 324 vTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
++|.+ ..+... ......+++.+++.++....+.+.+-..+...+ .+....|++.++|.+--+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 66554 333222 233567899999999988777766543322211 334567889999988533
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=5.1e-05 Score=82.93 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=116.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhc--cCceEEEEEeCccccHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNR--KFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
..++|-+...+.+...+... ...+.+.|+|..|+||||+|+.+.+.-.-.. .+... ....++......+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 46899999999999988543 2456799999999999999998876311100 01111 00111111122333
Q ss_pred HHHHhc-------CC--C-----CCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcE
Q 002071 261 IVEALD-------VS--S-----SGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESK 321 (973)
Q Consensus 261 i~~~l~-------~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ 321 (973)
|...-. .+ . ......+++. .+.+++ .+++-++|+|++...+....+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 322210 00 0 0112234432 344443 36677999999988877777778887765444455
Q ss_pred EE-EEcCChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 322 IL-VTTRKESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 322 ii-vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
+| +|++...+... ......+++.+++.++..+++.+...... .+ .+....+++.++|.|.....+
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~----~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD----GEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 44 44444333222 22356899999999999999988432111 11 334567899999999855443
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=7.4e-05 Score=82.80 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=109.2
Q ss_pred CceecchhHHHHHHHHhcCCCc----cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh-------------------cc
Q 002071 183 EEICGRVSEKNELISKLLCESS----EHQKGLHIISIVGMGGIGKTALAQLACNNDEVN-------------------RK 239 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 239 (973)
.+++|-+..++.+.+.+..... ....-.+-+-++|++|+||||+|+.+...-.-. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3588999989998888865320 001135678899999999999999886521100 11
Q ss_pred CceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHH---HHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcC
Q 002071 240 FDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLL---KTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKN 315 (973)
Q Consensus 240 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~ 315 (973)
.| +.++.... .....+++. +.+.. -..+++-++++|++...+....+.+...+..
T Consensus 85 pD-~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PD-VRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CC-EEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11 11221110 011222222 22111 1135566888999988776666777777766
Q ss_pred CCCCcEEEEEcCCh-HHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 316 GLPESKILVTTRKE-SVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 316 ~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
...+..+|++|.+. .+... ......+.+.+++.++..+.+.+... .. .+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 55666666666653 33322 23357899999999999988875421 11 344677899999999755433
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=8.2e-05 Score=74.54 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=65.3
Q ss_pred CCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCc
Q 002071 288 GKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPI 365 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (973)
+.+-++|+|++.......++.+...+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 567789999998776667778888887766667777777653 222221 22468999999999998888876 1 1
Q ss_pred ccchhHHHHHHHHHHhcCCchH
Q 002071 366 EECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~GlPL 387 (973)
. .+.+..|++.++|.|.
T Consensus 170 -~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPG 186 (188)
T ss_pred -C----HHHHHHHHHHcCCCcc
Confidence 1 3557889999999885
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=8.9e-05 Score=81.47 Aligned_cols=191 Identities=14% Similarity=0.083 Sum_probs=114.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC--c------eEEEEEeCccccH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF--D------KILWVCVSEAFEE 254 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~------~~~wv~~s~~~~~ 254 (973)
.+++|-+..++.+.+.+... .-.+.+-++|+.|+||+|+|..+.+.---.... + ...-+| ...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c-- 89 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH-- 89 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC--
Confidence 46999999999999888543 235678999999999999998876531111100 0 000000 000
Q ss_pred HHHHHHHHHHhcCC---------C-----CCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcC
Q 002071 255 FRIARAIVEALDVS---------S-----SGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKN 315 (973)
Q Consensus 255 ~~~~~~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~ 315 (973)
...+.|...-... . .....++++ +.+.+++ .+.+.++|+|++...+....+.+...+..
T Consensus 90 -~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 -PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred -hHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 1111111100000 0 011223442 3333433 25677999999988887778888888876
Q ss_pred CCCCcEEEEEcCChH-HHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 316 GLPESKILVTTRKES-VAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 316 ~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
-..++.+|++|.+.. +... ......+.+.+++.++..+++.+..... . .+....+++.++|.|..+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----P----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----C----HHHHHHHHHHcCCCHHHHHHH
Confidence 555666777766553 3222 2336789999999999999998764211 1 111267899999999866544
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4.2e-06 Score=99.57 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=88.6
Q ss_pred CceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc-ccchhhhc
Q 002071 569 RMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE-KLPETLCE 647 (973)
Q Consensus 569 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-~Lp~~i~~ 647 (973)
.++.|.+.++.+. +.+ +..+..+++|+.|+|++|.+.+ .+|..++.+.+|++|+|++|.+. .+|..+++
T Consensus 419 ~v~~L~L~~n~L~-----g~i-p~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLR-----GFI-PNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCCcc-----ccC-CHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 4778888776542 333 3448899999999999976643 58889999999999999999988 78999999
Q ss_pred cccccEEecCCCCCCcccCccccCC-CCcceeecCCCCCCCc
Q 002071 648 LYNLQKLDVSDCYGLKELPQGIGKL-VNMKHLLDDKTDSLGH 688 (973)
Q Consensus 648 L~~Lq~L~L~~~~~~~~lp~~i~~L-~~L~~L~l~~~~~~~~ 688 (973)
|.+|++|+|++|.....+|..+..+ .++..+++.+|..+..
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 9999999999998667899888753 4677888887754443
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=0.00011 Score=75.07 Aligned_cols=183 Identities=14% Similarity=0.181 Sum_probs=101.1
Q ss_pred Cceecchh-HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVS-EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~-~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~ 259 (973)
+-++|... ..-...+.+.... +.....+.|+|..|+|||.|.+.+++. ..... ..++|+++ .++..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~ 77 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIR 77 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHH
Confidence 34567532 3334444454332 123445899999999999999999984 33322 23556543 34455
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc-cChhh-HHhhhcC-CCCCcEEEEEcCCh-------
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY-MKWEP-FYHCLKN-GLPESKILVTTRKE------- 329 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-~~w~~-l~~~l~~-~~~gs~iivTtr~~------- 329 (973)
.+...+.. ... ..+++.++ .-=+|+|||++.... ..|.. +...+.. ...|.+||+|+...
T Consensus 78 ~~~~~~~~-----~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRD-----GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHT-----TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHc-----ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 55555432 112 22334444 345788999976432 22332 3333322 13567899999643
Q ss_pred --HHHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 330 --SVAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 330 --~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
+....+...-++++++.+.++..+++.+++...+-.-. +++..-|++.+.+..-.+.
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~----~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP----EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-----HHHHHHHHHHTTSSHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHhhcCCHHHHH
Confidence 23444566678999999999999999998865433221 5556667777765554443
No 99
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=2.7e-06 Score=96.62 Aligned_cols=176 Identities=23% Similarity=0.301 Sum_probs=101.1
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcc-cccEEEecccccccccccccCccccCCCCCcEEEecCCCccccch
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELT-SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPE 643 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~ 643 (973)
...+.+..|.+.++.+ ..+.+ ....+. +|+.|++++ +.+..+|..++.+++|+.|++++|.+..+|.
T Consensus 113 ~~~~~l~~L~l~~n~i------~~i~~-~~~~~~~nL~~L~l~~-----N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 113 LELTNLTSLDLDNNNI------TDIPP-LIGLLKSNLKELDLSD-----NKIESLPSPLRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred hcccceeEEecCCccc------ccCcc-ccccchhhcccccccc-----cchhhhhhhhhccccccccccCCchhhhhhh
Confidence 3345666666666554 11111 123332 677777777 4444566667777777777777777777776
Q ss_pred hhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCccc
Q 002071 644 TLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLES 723 (973)
Q Consensus 644 ~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 723 (973)
..+.+.+|+.|++++|. +..+|..+..+..|..|.+++|. ....+..+.+++++..|.+..+.... .+..+..
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~ 253 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED-----LPESIGN 253 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee-----ccchhcc
Confidence 66677777777777776 67777666566667777776663 23445556666666666532222111 1234455
Q ss_pred ccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCC
Q 002071 724 LKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKE 768 (973)
Q Consensus 724 l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 768 (973)
+.+++.|++.++.... ++ .+....+++.|+++.+..
T Consensus 254 l~~l~~L~~s~n~i~~-i~--------~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 254 LSNLETLDLSNNQISS-IS--------SLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccceeccccccccc-cc--------cccccCccCEEeccCccc
Confidence 5556666655554422 11 144566677777766543
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7e-05 Score=86.69 Aligned_cols=182 Identities=13% Similarity=0.156 Sum_probs=111.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh-------------------ccCceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN-------------------RKFDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 243 (973)
.+++|-+..++.+..++... .-.+.+.++|..|+||||+|+.+...-... +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 46899999999998888543 234567899999999999999987631110 011112
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH----HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCC
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK----SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPE 319 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~g 319 (973)
+++..+.. ...+++.+.+.. -..+++-++|+|++...+....+.+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22222111 112222211111 11356779999999877666677777777665556
Q ss_pred cEEEEEcCC-hHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHh
Q 002071 320 SKILVTTRK-ESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGS 394 (973)
Q Consensus 320 s~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 394 (973)
+.+|++|.+ +.+... ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666666644 332211 122468899999999999888876643322111 3445778899999875 4444433
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=8.7e-05 Score=86.55 Aligned_cols=195 Identities=13% Similarity=0.141 Sum_probs=113.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCc--eEEEEEeCccccHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFD--KILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 260 (973)
.+++|.+..++.+.+.+... .-.+-+-++|+.|+||||+|+.+.+.-....... ...+- .+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 46899999999999988543 2355788999999999999999976321111100 00000 0000011111
Q ss_pred HHHHhcC-----CCCCCCcHHHH---HHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc-CChH
Q 002071 261 IVEALDV-----SSSGLGEFQSL---LKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT-RKES 330 (973)
Q Consensus 261 i~~~l~~-----~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt-r~~~ 330 (973)
|...-.. ........+++ .+.+... ..+++-++|+|++...+....+.+...+..-...+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2111100 00111223332 2222111 13556689999998776666777887777665667776655 3333
Q ss_pred HHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 331 VAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
+...+ .....+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+.
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 33222 33568999999999999999887643332222 3556788999999986443
No 102
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.05 E-value=8.4e-06 Score=88.07 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=62.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc--ccHHHHHHHHHHHhcCCCCCCCcH------HHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA--FEEFRIARAIVEALDVSSSGLGEF------QSLLKT 281 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 281 (973)
-..++|+|.+|+|||||++.+++... .++|+..+||.+.+. .++.++++.|...+-....+.... ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 45799999999999999999998643 337999999999866 789999999854433322221111 111222
Q ss_pred HHHH-hcCCcEEEEEecCCC
Q 002071 282 ISKS-ITGKRFFLVLDDVWD 300 (973)
Q Consensus 282 l~~~-l~~kr~LlVlDdvw~ 300 (973)
.... -+|++.+|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 268999999999953
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.05 E-value=3.5e-05 Score=79.72 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
+..+.-+.+||++|.||||||+.+.+..+... ..||..|....-..-.+.|+++... ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 34678889999999999999999988533222 5677776655444444555554321 1234
Q ss_pred cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEE--EcCChHH---HHHhCCCCeeeCCCCCHHHHHHHHHHH
Q 002071 287 TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILV--TTRKESV---AFMMGSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 287 ~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
.++|.+|++|.|..-+..+-+. +||.-.+|+-++| ||-++.. +..+..+.++.|+.|+.++-..++.+.
T Consensus 220 ~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 6789999999997654333333 3455556776665 4555432 233455789999999999999998874
No 104
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=5.5e-06 Score=65.51 Aligned_cols=56 Identities=29% Similarity=0.513 Sum_probs=28.1
Q ss_pred CCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCC
Q 002071 627 HLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKT 683 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 683 (973)
+|++|++++|.++.+| ..+.++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 4455555555555554 244555555555555554 444432 3445555555555554
No 105
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00019 Score=83.82 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=113.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE-eCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC-VSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 261 (973)
.+++|-+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+.+.-.....++...|-. +..++..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899998888888877432 2346688999999999999988876321111111001110 00111111111111
Q ss_pred HHHhcCC-----CCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc-CChHH
Q 002071 262 VEALDVS-----SSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT-RKESV 331 (973)
Q Consensus 262 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt-r~~~v 331 (973)
...-... .......+++.+.+... ..+++-++|+|+++..+....+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1111000 00111233333322222 23556688999998776666777888877655556655554 44444
Q ss_pred HHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHH
Q 002071 332 AFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAI 392 (973)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 392 (973)
... ......+++.+++.++....+.+.+...+.... .+.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 332 334678999999999988888776543222111 4556789999999664 44443
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00014 Score=87.87 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=114.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..++.|...+... .-.+.+.++|..|+||||+|+.+.+...-...... ..+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 46899999999998888542 23467889999999999999998764211111000 0000000011111
Q ss_pred HH-------hcCCCCCCCcHHHHHH---HHH-HHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC-ChH
Q 002071 263 EA-------LDVSSSGLGEFQSLLK---TIS-KSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR-KES 330 (973)
Q Consensus 263 ~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr-~~~ 330 (973)
.. +.........++++.+ .+. .-..++.-++|||+++..+...++.|+..+..-...+.+|++|. ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 0000000112222222 111 11245666889999998887888888888877656666665554 344
Q ss_pred HHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHhh
Q 002071 331 VAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGSL 395 (973)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 395 (973)
+...+ .....|++..++.++..+++.+.+-..+...+ .+....|++.++|.+. ++..+-++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44332 33678999999999998888776533222111 3345678999999884 33343333
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00016 Score=83.60 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=114.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+.+........+. ..++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 46889888888888777432 23467888999999999999998764211100000 0111111111111
Q ss_pred HHhcC-----CCCCCCcHHHH---HHHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH
Q 002071 263 EALDV-----SSSGLGEFQSL---LKTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA 332 (973)
Q Consensus 263 ~~l~~-----~~~~~~~~~~~---~~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (973)
..... ........+++ .+.+.. -..+++-++|||++...+...++.|...+..-.....+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 11000 00001112221 111111 12456779999999877666677787777654445666665554 4443
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch-HHHHHHHhhh
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP-LTTKAIGSLM 396 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 396 (973)
.. ......+++.+++.++....+...+.......+ .+....|++.++|.+ -|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 233468899999999999988876654332122 445677888999865 6777766554
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00022 Score=82.79 Aligned_cols=198 Identities=16% Similarity=0.150 Sum_probs=115.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+.-.-....+ + .+++.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 46899999999999988542 2356678999999999999999876311101000 0 0011001111111
Q ss_pred HH---------hcCC-CCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc-CChH
Q 002071 263 EA---------LDVS-SSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT-RKES 330 (973)
Q Consensus 263 ~~---------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt-r~~~ 330 (973)
.. +... ..+..+..++.+.+... ..+++-++|+|++...+....+.+...+..-.....+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 0000 00111222222222211 13566789999998877777788888887655566666555 4444
Q ss_pred HHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHhhh
Q 002071 331 VAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGSLM 396 (973)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 396 (973)
+-.. ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 233578999999999998888876654332222 3455778899999874 555554444
No 109
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=1.1e-06 Score=88.14 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhh
Q 002071 566 RIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETL 645 (973)
Q Consensus 566 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i 645 (973)
.+..|.+++++++.+ .. +.+...-.+.+|+|++++|.+. .+ .++..|++|..||||+|.++.+-..-
T Consensus 282 TWq~LtelDLS~N~I------~~-iDESvKL~Pkir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI------TQ-IDESVKLAPKLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred hHhhhhhccccccch------hh-hhhhhhhccceeEEecccccee-----ee-hhhhhcccceEeecccchhHhhhhhH
Confidence 344555666665543 11 2222444556666666664332 12 23555666666666666655555444
Q ss_pred hccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCccc--ccCCCccccccCCeeeeC
Q 002071 646 CELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMP--VGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~~ 708 (973)
.+|-|.++|.|.+|. ++.+. ++.+|-+|..|++++|++ ..+. .+||+|+.|++|.+..+.
T Consensus 349 ~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCC
Confidence 556666666666654 44442 355666666666666533 2221 346666666666544433
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00022 Score=79.80 Aligned_cols=185 Identities=16% Similarity=0.185 Sum_probs=107.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh------hccCceE-EEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV------NRKFDKI-LWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~-~wv~~s~~~~~~ 255 (973)
.+++|.+...+.+.+.+... .-.+.+.++|++|+||||+|+.+.+...- ...|... +-+.........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 46899999999999988542 23568889999999999999998763111 0112111 111111111111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC-ChHHHHH
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR-KESVAFM 334 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr-~~~v~~~ 334 (973)
. .+.+++.+.. .-..+++-++++|++.......++.+...+......+.+|++|. ...+...
T Consensus 92 ~-i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 D-IRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred H-HHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1 1111111110 01124556899999976554556667666655444555665553 3332222
Q ss_pred -hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHH
Q 002071 335 -MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIG 393 (973)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 393 (973)
......++..++++++....+...+...+-.-. .+....+++.++|.+- |+..+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHHHHH
Confidence 233457899999999999988887654332111 4566778888998665 434333
No 111
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=0.00013 Score=82.84 Aligned_cols=168 Identities=20% Similarity=0.141 Sum_probs=101.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|..|+|||+|++.+.+.......-..+++++. .++...+...+.... .....+.+.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 356899999999999999999883211111123444433 456666666654211 11223334443 3
Q ss_pred cEEEEEecCCCCCc-cCh-hhHHhhhcCC-CCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGDY-MKW-EPFYHCLKNG-LPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 290 r~LlVlDdvw~~~~-~~w-~~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (973)
.-+|||||+..... ..| +.+...+... ..|..||+|+... .+...+...-++.+++++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 44888999965432 122 3344443321 3445788887643 2333345567889999999999999999
Q ss_pred HhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHH
Q 002071 358 IAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIG 393 (973)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 393 (973)
++-..+... .--+++..-|++.+.|.|-.+..+.
T Consensus 287 ~~~~~gl~~--~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIKQ--EVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCCC--CCCHHHHHHHHHccCCCHHHHHHHH
Confidence 875432100 1125677889999999997655443
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0001 Score=86.89 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=113.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..++.+..++... .-.+.+.++|..|+||||+|+.+.+.-....... ....++.-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 46899999999998888542 2346678999999999999999976321100000 001112222233333
Q ss_pred HHhcCC-----CCCCCcHHHHHH---HHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH
Q 002071 263 EALDVS-----SSGLGEFQSLLK---TISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA 332 (973)
Q Consensus 263 ~~l~~~-----~~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (973)
...... .......+++.+ .+... ..+++-++|||++........+.+...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 001122232222 11111 1256778999999776555667777777665556677666643 3333
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
.. ......+.+..++.++....+...+...+.... .+....|++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 223457889999999998888877654332221 35577899999998864443
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.8e-07 Score=91.41 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=107.9
Q ss_pred hccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCC--CCccccccCccEEEEecCCCC
Q 002071 751 ELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVF--PGWMMPLTNLRSLTLEKCEKC 828 (973)
Q Consensus 751 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~~ 828 (973)
.+..++.|+.|+|.++... +.+...+....+|+.|+|+++.+.+.. -..+.+|+.|..|+|++|...
T Consensus 205 iLs~C~kLk~lSlEg~~Ld-----------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLD-----------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHhhhhccccccccC-----------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 4555677777777665432 345667777888999999988775422 122448899999999999765
Q ss_pred CcCCC--C-CCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeec
Q 002071 829 KQIPP--L-GKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAII 905 (973)
Q Consensus 829 ~~l~~--l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~ 905 (973)
.+.-. + .--++|+.|+|+||... ++......-...+|+|..|+++++..++.-. ......||.|+.|.++
T Consensus 274 ~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-----~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 274 TEKVTVAVAHISETLTQLNLSGYRRN--LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-----FQEFFKFNYLQHLSLS 346 (419)
T ss_pred chhhhHHHhhhchhhhhhhhhhhHhh--hhhhHHHHHHHhCCceeeeccccccccCchH-----HHHHHhcchheeeehh
Confidence 53211 1 11378999999987632 1111111112368999999999987776522 1223368999999999
Q ss_pred cCccCCCCCC---CCCCCCCcceEEEccCC
Q 002071 906 SCPKLKALPD---HFHQMTTLKELYILGCA 932 (973)
Q Consensus 906 ~c~~l~~lp~---~l~~l~~L~~L~i~~c~ 932 (973)
.|..+. |. .+...|+|..|++.||-
T Consensus 347 RCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 997542 33 34678999999999984
No 114
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=8.1e-06 Score=64.53 Aligned_cols=58 Identities=29% Similarity=0.554 Sum_probs=48.8
Q ss_pred ccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCY 660 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~ 660 (973)
++|++|++++ +.+..+| ..+..+++|++|++++|.++.+| ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~-----n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-----NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-----STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-----CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4689999999 4555676 56788999999999999999886 578999999999999986
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=5e-05 Score=84.63 Aligned_cols=182 Identities=17% Similarity=0.095 Sum_probs=100.5
Q ss_pred ccCCCceecchhHHHHHHHHhcCCCcc-------CCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 179 FIDEEEICGRVSEKNELISKLLCESSE-------HQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 179 ~~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
.+...++.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~- 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG- 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch-
Confidence 334457999999999998877432110 1123456899999999999999999883 33333 22221
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCC-----------ccChhhHHhhh---cC-
Q 002071 252 FEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGD-----------YMKWEPFYHCL---KN- 315 (973)
Q Consensus 252 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~-----------~~~w~~l~~~l---~~- 315 (973)
..+ .....+ ........+.+.. ...+.+|+||+++... ...+..+...+ ..
T Consensus 190 ---~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ---SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ---HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 111 111000 0111111222222 3456899999996531 11112233332 21
Q ss_pred -CCCCcEEEEEcCChHHH-HHh----CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 316 -GLPESKILVTTRKESVA-FMM----GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 316 -~~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
...+.+||.||...... ..+ .....+.+...+.++..++|..++....... .-+ ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 13467788888754321 111 1245788999999999999998875432211 112 245667776654
No 116
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.7e-07 Score=91.55 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCcc-ccchhhhccccccEEecCCCCCCcccC--ccccCCCCc
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE-KLPETLCELYNLQKLDVSDCYGLKELP--QGIGKLVNM 675 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~lp--~~i~~L~~L 675 (973)
.|++|||+...++.. .+-.-+..+.+|+.|+|.++.+. .+-..|.+-.+|+.|+|+.|..+.+.. --+.+++.|
T Consensus 186 Rlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 577777776443322 22233455666777777766654 334456666677777777766554422 123456666
Q ss_pred ceeecCCCC
Q 002071 676 KHLLDDKTD 684 (973)
Q Consensus 676 ~~L~l~~~~ 684 (973)
..|+++.|.
T Consensus 263 ~~LNlsWc~ 271 (419)
T KOG2120|consen 263 DELNLSWCF 271 (419)
T ss_pred hhcCchHhh
Confidence 666666663
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00046 Score=78.98 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=109.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh--h-----------------ccCceE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV--N-----------------RKFDKI 243 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~F~~~ 243 (973)
.+++|-+...+.+.+.+... .-.+.+.++|+.|+||||+|+.++..-.- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 46889999999998888542 23456778999999999999988662110 0 011112
Q ss_pred EEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEE
Q 002071 244 LWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKI 322 (973)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~i 322 (973)
+++..+..... .+...+.+.+... ..+++-++|+|+++..+....+.+...+....+...+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22221111111 1112222222111 2366779999999876655667777777665555566
Q ss_pred EEEc-CChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 323 LVTT-RKESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 323 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
|++| +...+... ......+.+.+++.++....+.+.+-..+...+ .+....|++.++|.+-.+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6555 33333322 233458899999999998888886644332221 345677888999977644433
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00034 Score=82.15 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=111.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc-Cce-EEEEE---eCccccHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK-FDK-ILWVC---VSEAFEEFRI 257 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~---~s~~~~~~~~ 257 (973)
.+++|-+..++.+...+... .-.+.+-++|+.|+||||+|+.++..---... ..+ .+-.| ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 46899999999999988543 23567789999999999999998763110000 000 00000 00000000
Q ss_pred HHHHHHHhcCC-CCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEE-EEcCChHHHHH
Q 002071 258 ARAIVEALDVS-SSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKIL-VTTRKESVAFM 334 (973)
Q Consensus 258 ~~~i~~~l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ii-vTtr~~~v~~~ 334 (973)
.+... ..+..+..++.+.+... ..+++-++|+|++.......+..+...+......+.+| +||....+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 00011122222222211 23667799999998777677788877776544455555 45444444432
Q ss_pred -hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHH
Q 002071 335 -MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIG 393 (973)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 393 (973)
......+++.+++.++....+...+...+.... .+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 333568999999999999888876543322111 3456789999999774 444433
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00038 Score=75.23 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=125.9
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
+..++||+.++..+.+++...-. .....-+.|.|.+|.|||.+...|+.+..-...=-.++++.+-.-.....++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 45799999999999999976653 3456789999999999999999998853221111245777666556677777777
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCC--cEEEEEecCCCCCccChhhHHhhhcC-CCCCcEEEEEcCChHH--HH---
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGK--RFFLVLDDVWDGDYMKWEPFYHCLKN-GLPESKILVTTRKESV--AF--- 333 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~w~~l~~~l~~-~~~gs~iivTtr~~~v--~~--- 333 (973)
...+...........+....+.++.++. -+|+|+|.++.-....-..+...|.+ .-+++++|+.---... ..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 7776211111111144455666666433 58999999865432233334444443 2467777665432111 11
Q ss_pred --H---h-CCCCeeeCCCCCHHHHHHHHHHHhccCCCc-ccchhHHHHHHHHHHhcCCchHHHHHHHhh
Q 002071 334 --M---M-GSTDIIPVQELAEEECWLLFNRIAFFGRPI-EECVKLEKIGRKIAGKCRGLPLTTKAIGSL 395 (973)
Q Consensus 334 --~---~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 395 (973)
. . .....+...|-+.++-.+.|..+.-..... ..+..++-.|++++.-.|.+=-|+.+.-++
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1 1 124567788999999999999987533222 112233333333333334444454444433
No 120
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=5e-05 Score=83.62 Aligned_cols=120 Identities=11% Similarity=0.168 Sum_probs=77.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++..+..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 4588889999999999863 2468889999999999999998854444577889999999988877654322
Q ss_pred HHhcCCCCCCCcH-HHHHHHHHHHh--cCCcEEEEEecCCCCCccC-hhhHHhhhc
Q 002071 263 EALDVSSSGLGEF-QSLLKTISKSI--TGKRFFLVLDDVWDGDYMK-WEPFYHCLK 314 (973)
Q Consensus 263 ~~l~~~~~~~~~~-~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~-w~~l~~~l~ 314 (973)
.....+-.-. .-..+.+.+.. .+++++||+|++...+... +..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1111010000 11112222222 2468999999997765433 344444443
No 121
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00071 Score=68.47 Aligned_cols=174 Identities=21% Similarity=0.213 Sum_probs=101.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+|+|-++.++++-=.+..... .+..+--|.++|++|.||||||.-+++. ....+ -++-...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~----------- 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPA----------- 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----Eeccccc-----------
Confidence 4699999888887666654332 5667889999999999999999999884 32222 1111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcC--------CCCCcE-----------EE
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKN--------GLPESK-----------IL 323 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~--------~~~gs~-----------ii 323 (973)
.....++...+. .|+. .=++.+|.++......-+.+..+..+ .++++| |=
T Consensus 88 ---------leK~gDlaaiLt-~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 88 ---------LEKPGDLAAILT-NLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ---------ccChhhHHHHHh-cCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 111122222211 1222 33455677765443322333332221 123333 33
Q ss_pred EEcCChHHHHHhCC--CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 324 VTTRKESVAFMMGS--TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 324 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
-|||.-.+.+.+.. .-+.+++.-+.+|-.+...+.+.--.-.. -.+.+.+|+++..|-|--+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHH
Confidence 67886554443322 33678888899999999988774322211 2556789999999999533
No 122
>PF14516 AAA_35: AAA-like domain
Probab=97.89 E-value=0.0014 Score=71.61 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=120.1
Q ss_pred CCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-----ccHH
Q 002071 181 DEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-----FEEF 255 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~ 255 (973)
+.+..|.|...-+++.+.+..+ -..+.|.|+-.+|||+|...+.+..+. ..+ .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 3445778886777778777543 358999999999999999999874322 233 4567776541 2455
Q ss_pred HHHHHH----HHHhcCCCC-------CCCcHHHHHHHHHHHh---cCCcEEEEEecCCCCCc--cChhhHHhhhcC----
Q 002071 256 RIARAI----VEALDVSSS-------GLGEFQSLLKTISKSI---TGKRFFLVLDDVWDGDY--MKWEPFYHCLKN---- 315 (973)
Q Consensus 256 ~~~~~i----~~~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~--~~w~~l~~~l~~---- 315 (973)
.+++.+ .++++.... ...........+.+++ .+++.+|+||+|+..-. .....+...++.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 445444 445544321 0112223333444433 26899999999975321 112334443331
Q ss_pred CC----CCcEEEEEcCChHH--HHH-----hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC
Q 002071 316 GL----PESKILVTTRKESV--AFM-----MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG 384 (973)
Q Consensus 316 ~~----~gs~iivTtr~~~v--~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 384 (973)
.. ...-.++...+... ... ......++|++++.+|...|..++... .. ....++|...++|
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCC
Confidence 11 11112222221111 111 122357899999999999999886422 11 1227889999999
Q ss_pred chHHHHHHHhhhcCC
Q 002071 385 LPLTTKAIGSLMRSK 399 (973)
Q Consensus 385 lPLai~~~~~~l~~~ 399 (973)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0004 Score=81.80 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=111.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh---------------------hhccCc
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE---------------------VNRKFD 241 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 241 (973)
.+++|-+..++.+...+... .-.+.+-++|..|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999988542 2356788999999999999988766311 011233
Q ss_pred eEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcE
Q 002071 242 KILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESK 321 (973)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ 321 (973)
. ..+..+.....+++ +.+++++... -..+++-++|+|++...+...++.+...+..-...+.
T Consensus 92 ~-~~ld~~~~~~vd~I-r~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDDI-RNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHHH-HHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2 12222211111111 1111111100 0124566889999988776778888888876555666
Q ss_pred EEEEc-CChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 322 ILVTT-RKESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 322 iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
+|++| ....+-.. ......+++.+++.++....+.+.+...+-... .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66554 44444433 233568999999999999888876644332111 345678999999977533
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00057 Score=78.14 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=112.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh--h------------------ccCce
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV--N------------------RKFDK 242 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~------------------~~F~~ 242 (973)
.+++|-+...+.+...+... .-.++..++|..|+||||+|+.+.+.--- . .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 46899998888888888532 24567789999999999999987653100 0 0111
Q ss_pred EEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCC
Q 002071 243 ILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLP 318 (973)
Q Consensus 243 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~ 318 (973)
++.+..+... ..+++.+.+... ..+++-++|+|++...+....+.+...+.....
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1222111111 122332222210 125567899999988777777778888766556
Q ss_pred CcEEEEEcCCh-HHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 319 ESKILVTTRKE-SVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 319 gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
.+++|++|.+. .+... ......+++.+++.++....+.+.+...+.... .+....|++.++|.+--+..
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 67777776653 22211 222568999999999999988876644332222 45678899999999954433
No 125
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.88 E-value=7.8e-07 Score=93.63 Aligned_cols=267 Identities=18% Similarity=0.160 Sum_probs=162.3
Q ss_pred CCcEEEecCCC---ccccchhhhccccccEEecCCCCCCcc--cCccccCCCCcceeecCCCCCCCcccccCCCcccccc
Q 002071 627 HLRYLNLSHQS---IEKLPETLCELYNLQKLDVSDCYGLKE--LPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRT 701 (973)
Q Consensus 627 ~L~~L~Ls~~~---i~~Lp~~i~~L~~Lq~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 701 (973)
.|+.|+++++. ...+-....+++|+++|.+.+|..+.. +-..-..+.+|+||++..|..+.... |+.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~--------Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS--------LKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH--------HHH
Confidence 47888888876 224555567889999999999886543 22222468889999888774433211 111
Q ss_pred CCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHH
Q 002071 702 LVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQ 781 (973)
Q Consensus 702 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 781 (973)
| ...+++|..|.++.+..... .-..+...++..++.+.+.+|... ..+
T Consensus 211 l------------------a~gC~kL~~lNlSwc~qi~~-----~gv~~~~rG~~~l~~~~~kGC~e~---------~le 258 (483)
T KOG4341|consen 211 L------------------AEGCRKLKYLNLSWCPQISG-----NGVQALQRGCKELEKLSLKGCLEL---------ELE 258 (483)
T ss_pred H------------------HHhhhhHHHhhhccCchhhc-----CcchHHhccchhhhhhhhcccccc---------cHH
Confidence 1 12345555555555443221 111223345555666655544221 112
Q ss_pred HHHhhcCCCCCccEEEEeeecCCCCCCCccc--cccCccEEEEecCCCCCcCCC--C-CCcCcccceeccccccceeeCc
Q 002071 782 QLLEALQPPLNLKELLIGLYRGNTVFPGWMM--PLTNLRSLTLEKCEKCKQIPP--L-GKLSSLEKLMIWGLKSVKRVAN 856 (973)
Q Consensus 782 ~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~--~l~~L~~L~L~~~~~~~~l~~--l-~~l~~L~~L~L~~~~~l~~~~~ 856 (973)
.+...=...+-+.++++..|...++..-|.. .+..|+.|+.++|....+.+. | .+.++|+.|.+.+|..+...+-
T Consensus 259 ~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 259 ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 2221112334566677666654442333332 688999999999976544332 4 4689999999999987665554
Q ss_pred ccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCC-----CCCCCCCCCcceEEEccC
Q 002071 857 EFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKAL-----PDHFHQMTTLKELYILGC 931 (973)
Q Consensus 857 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-----p~~l~~l~~L~~L~i~~c 931 (973)
...+- ..+.|+.|.+..+........ ......+|.|++|.++.|..++.- ..+-..+..|..+++++|
T Consensus 339 t~l~r---n~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 339 TMLGR---NCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hhhhc---CChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 43332 688899998888754443322 223447999999999999766532 333345678999999999
Q ss_pred CCccccccC
Q 002071 932 AIPGVRFRN 940 (973)
Q Consensus 932 ~~l~~~~~~ 940 (973)
|.+.+..-.
T Consensus 412 p~i~d~~Le 420 (483)
T KOG4341|consen 412 PLITDATLE 420 (483)
T ss_pred CCchHHHHH
Confidence 987766544
No 126
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.87 E-value=0.00029 Score=73.28 Aligned_cols=200 Identities=19% Similarity=0.164 Sum_probs=118.9
Q ss_pred ceecch---hHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh--hcc--CceEEEEEeCccccHHH
Q 002071 184 EICGRV---SEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV--NRK--FDKILWVCVSEAFEEFR 256 (973)
Q Consensus 184 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~--F~~~~wv~~s~~~~~~~ 256 (973)
.++|-. +..+++.++|..+ ......-+.|||..|.|||++++++.+.-.. ... --.++.|.+....+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 455543 3455666666544 2456677999999999999999999763111 000 01477888889999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-CCcEEEEEecCCCC---CccChhhHHhhhcC---CCCCcEEEEEcCCh
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSIT-GKRFFLVLDDVWDG---DYMKWEPFYHCLKN---GLPESKILVTTRKE 329 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~---~~~~w~~l~~~l~~---~~~gs~iivTtr~~ 329 (973)
++..|+.+++.+.........+.......++ -+--+||+|.+.+. ...+-..+...++. .-.=+-|.+-|+..
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 9999999999887666666666655556664 24457899999662 11122334444433 22334555555533
Q ss_pred HHHHHh-----CCCCeeeCCCCCHHH-HHHHHHHHh--ccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 330 SVAFMM-----GSTDIIPVQELAEEE-CWLLFNRIA--FFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 330 ~v~~~~-----~~~~~~~l~~L~~~~-~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
--+-.. +--.++.+.....++ ...|+.... .+-.. ...-...++++.|...++|+.=
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchH
Confidence 222111 112456666666544 444443321 11111 1112336788999999999874
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00055 Score=80.60 Aligned_cols=194 Identities=15% Similarity=0.156 Sum_probs=112.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+...+.+..++.... -.+.+.++|..|+||||+|+.+++.-.-. ..+.. ....+..-...+.|.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 468999999999988885431 23567899999999999999997742111 11000 001111122222332
Q ss_pred HHhcC-----CCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH
Q 002071 263 EALDV-----SSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA 332 (973)
Q Consensus 263 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (973)
..... ........+++.+.+... ..+++-++|+|++.......++.+...+..-...+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 22111 001112233332222111 1355678999999877666777888777765455555555543 3333
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
.. ......+++..++.++....+...+...+.... .+....|++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 233567888999999988888776543222111 3456788999999886443
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.84 E-value=0.00071 Score=72.08 Aligned_cols=136 Identities=14% Similarity=0.079 Sum_probs=74.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.++|.+|+||||+|+.+++.....+.-...-|+.++.. ++ .....+.. .......+.+. .+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l----~~~~~g~~-----~~~~~~~l~~a-~g- 123 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DL----VGQYIGHT-----APKTKEVLKKA-MG- 123 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HH----HHHHhccc-----hHHHHHHHHHc-cC-
Confidence 345888999999999999999773211111111124554421 22 22221111 11112222222 22
Q ss_pred cEEEEEecCCCC---------CccChhhHHhhhcCCCCCcEEEEEcCChHHHHHh--------CCCCeeeCCCCCHHHHH
Q 002071 290 RFFLVLDDVWDG---------DYMKWEPFYHCLKNGLPESKILVTTRKESVAFMM--------GSTDIIPVQELAEEECW 352 (973)
Q Consensus 290 r~LlVlDdvw~~---------~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~ 352 (973)
-+|+||++... ..+.-+.+...+.....+.+||+++......... .....+.+++++.+|..
T Consensus 124 -gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 124 -GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred -CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 48999999642 1112233444444444566777777654443221 11347899999999999
Q ss_pred HHHHHHhcc
Q 002071 353 LLFNRIAFF 361 (973)
Q Consensus 353 ~lf~~~~~~ 361 (973)
+++...+..
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887644
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2e-05 Score=56.95 Aligned_cols=39 Identities=33% Similarity=0.553 Sum_probs=23.7
Q ss_pred CCcEEEecCCCccccchhhhccccccEEecCCCCCCcccC
Q 002071 627 HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELP 666 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp 666 (973)
+|++|++++|.|+.+|..+++|++|++|++++|. +..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666666666666666666665 44443
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00066 Score=76.83 Aligned_cols=153 Identities=19% Similarity=0.136 Sum_probs=88.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|..|+|||+|++.+++. +......+++++. ..+...+...+... . .+.++..++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 456899999999999999999984 3322334555543 23444455444321 1 122333333 3
Q ss_pred cEEEEEecCCCCCccCh--hhHHhhhcC-CCCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGDYMKW--EPFYHCLKN-GLPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (973)
.-+|++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44888999965432222 233333221 12355788888642 1222344456889999999999999998
Q ss_pred HhccCCCcccchhHHHHHHHHHHhcCC
Q 002071 358 IAFFGRPIEECVKLEKIGRKIAGKCRG 384 (973)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~G 384 (973)
++-..+..- + .++..-|++.+.|
T Consensus 283 k~~~~~~~l-~---~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRI-E---ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCC-C---HHHHHHHHHhcCC
Confidence 875433211 1 3444556555553
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.80 E-value=0.00084 Score=76.14 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=91.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+.|+|..|+|||+|++.+++. ..... ..++|+++. ++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSSE------KFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEHH------HHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 356899999999999999999984 33332 245666433 3344444444321 1222 233333
Q ss_pred CCcEEEEEecCCCCCccC-h-hhHHhhhcCC-CCCcEEEEEcCChH---------HHHHhCCCCeeeCCCCCHHHHHHHH
Q 002071 288 GKRFFLVLDDVWDGDYMK-W-EPFYHCLKNG-LPESKILVTTRKES---------VAFMMGSTDIIPVQELAEEECWLLF 355 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~-w-~~l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 355 (973)
+ .-+|||||+....... + +.+...+... ..|..+|+|+.... +...+.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3488999997532211 1 2233333221 23456788776421 1122333457899999999999999
Q ss_pred HHHhccCCCcccchhHHHHHHHHHHhcCCchHH
Q 002071 356 NRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLT 388 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 388 (973)
.+.+........ .++...|++.+.|.+-.
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHH
Confidence 988754332222 45667788888776653
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=0.00066 Score=72.41 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=74.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
.-+.++|.+|.||||+|+.++......+.....-|+.++. .+ ++..+.+.. .......+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cC
Confidence 3688999999999999987766311111111113444442 11 222221111 11122222222 23
Q ss_pred EEEEEecCCCC---------CccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhCC--------CCeeeCCCCCHHHHHH
Q 002071 291 FFLVLDDVWDG---------DYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMGS--------TDIIPVQELAEEECWL 353 (973)
Q Consensus 291 ~LlVlDdvw~~---------~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~--------~~~~~l~~L~~~~~~~ 353 (973)
-+|+||++..- ....++.+...+.....+.+||+++........... ...+.+++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999632 112234455555555556677777765433222111 3578999999999999
Q ss_pred HHHHHhcc
Q 002071 354 LFNRIAFF 361 (973)
Q Consensus 354 lf~~~~~~ 361 (973)
++.+.+-.
T Consensus 203 I~~~~l~~ 210 (284)
T TIGR02880 203 IAGLMLKE 210 (284)
T ss_pred HHHHHHHH
Confidence 99887643
No 133
>PRK06620 hypothetical protein; Validated
Probab=97.79 E-value=0.00079 Score=68.44 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=78.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
..+.|+|++|+|||+|++.+++... . .++. ..+.. + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 6799999999999999999877421 1 1221 00000 0 0111 23
Q ss_pred EEEEEecCCCCCccChhhHHhhhcC-CCCCcEEEEEcCChH-------HHHHhCCCCeeeCCCCCHHHHHHHHHHHhccC
Q 002071 291 FFLVLDDVWDGDYMKWEPFYHCLKN-GLPESKILVTTRKES-------VAFMMGSTDIIPVQELAEEECWLLFNRIAFFG 362 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 362 (973)
-++++||+..-+. ..+...+-. ...|..||+|++... ....+...-++++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5788999963211 122222211 135668999987532 23334556689999999999888888776432
Q ss_pred CCcccchhHHHHHHHHHHhcCCchH
Q 002071 363 RPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
+ ...+ +++..-|++.+.|---
T Consensus 164 ~-l~l~---~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 S-VTIS---RQIIDFLLVNLPREYS 184 (214)
T ss_pred C-CCCC---HHHHHHHHHHccCCHH
Confidence 1 1111 5566777777776554
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00088 Score=76.17 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=108.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh---------------------ccCc
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN---------------------RKFD 241 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 241 (973)
.+++|.+..++.+.+.+... .-.+.+-++|..|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 46899999999998888532 234678889999999999999886631100 0111
Q ss_pred eEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCc
Q 002071 242 KILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPES 320 (973)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs 320 (973)
.+++........ .+..++.+.+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111111 111111111111 113567789999997665555666777776655566
Q ss_pred EEEEEcCC-hHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHH
Q 002071 321 KILVTTRK-ESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIG 393 (973)
Q Consensus 321 ~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 393 (973)
.+|++|.. ..+-.. ......+++.++++++....+.+.+-..+...+ .+.+..|++.++|.+- |+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 67766643 232222 233568999999999998888876543222111 4556789999999764 444443
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.78 E-value=0.0014 Score=69.09 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=106.5
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
.+.+.+|+.+++.+..++...+ .--+..|.|+|-.|.|||.+.+++++... -..+|+++-+.++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4678999999999999886543 12456679999999999999999998531 245899999999999999999
Q ss_pred HHHhcCCCCCCC-------cHHHHHHHHHH--Hhc--CCcEEEEEecCCCCCccChhhHHhhhc--C--CCCCcEEEEEc
Q 002071 262 VEALDVSSSGLG-------EFQSLLKTISK--SIT--GKRFFLVLDDVWDGDYMKWEPFYHCLK--N--GLPESKILVTT 326 (973)
Q Consensus 262 ~~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdvw~~~~~~w~~l~~~l~--~--~~~gs~iivTt 326 (973)
+.+....+.+.. +....+..+.+ ..+ ++.++||||++..-....-..+...+. . ..+. -+|+++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils 155 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILS 155 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEe
Confidence 999863222211 11222233333 122 468999999996532111111111111 1 1233 334444
Q ss_pred CChHHHHH---hCCC--CeeeCCCCCHHHHHHHHHHHh
Q 002071 327 RKESVAFM---MGST--DIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 327 r~~~v~~~---~~~~--~~~~l~~L~~~~~~~lf~~~~ 359 (973)
-...-... +|+. .++....-+.+|-.+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 33222222 3443 356678889999998887643
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.78 E-value=0.00047 Score=72.93 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=81.3
Q ss_pred ceecchhHHHHHHHHhcC---------CCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 184 EICGRVSEKNELISKLLC---------ESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
.++|.+..+++|.+.... ..-...+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666543211 11012335567889999999999999999763111111111123333221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc--------cChhhHHhhhcCCCCCcEEEEEc
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY--------MKWEPFYHCLKNGLPESKILVTT 326 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------~~w~~l~~~l~~~~~gs~iivTt 326 (973)
++. ...- + .......+.+.+. . .-+|++|++..-.. ...+.+...+........+|+++
T Consensus 84 -~l~----~~~~----g-~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYI----G-HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhc----c-chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 1100 0 0011112222222 2 24889999975221 11233333333333334556665
Q ss_pred CChHHHHH------h-CC-CCeeeCCCCCHHHHHHHHHHHhcc
Q 002071 327 RKESVAFM------M-GS-TDIIPVQELAEEECWLLFNRIAFF 361 (973)
Q Consensus 327 r~~~v~~~------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~ 361 (973)
........ + .. ...+.+++++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 54332111 1 11 246789999999999999877643
No 137
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.73 E-value=1.3e-05 Score=79.54 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=63.1
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc----ccc-------hhhhccccccEEecCCCCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE----KLP-------ETLCELYNLQKLDVSDCYGL 662 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~----~Lp-------~~i~~L~~Lq~L~L~~~~~~ 662 (973)
+..+..+..++||+|.+.......+...|.+-.+|+..++|.-... .+| ..+-++++||+.+|+.|.+-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4447777888888877764444556666777777888777754211 333 34567899999999999866
Q ss_pred cccCcc----ccCCCCcceeecCCC
Q 002071 663 KELPQG----IGKLVNMKHLLDDKT 683 (973)
Q Consensus 663 ~~lp~~----i~~L~~L~~L~l~~~ 683 (973)
...|+. |.+-++|.||.+++|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC
Confidence 666654 456788999999888
No 138
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=1.4e-05 Score=80.49 Aligned_cols=204 Identities=16% Similarity=0.107 Sum_probs=109.4
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc----ccchhhhccccccEEecCCCCC-CcccCcc
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE----KLPETLCELYNLQKLDVSDCYG-LKELPQG 668 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~----~Lp~~i~~L~~Lq~L~L~~~~~-~~~lp~~ 668 (973)
-.....++.|||.+|.++ ...++-.-+.+|++|+.|+|++|.+. .+| -.+.+|++|.|.++.. .......
T Consensus 67 ~~~~~~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHHhhhhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 355677888888887663 23344445567888888888888744 344 2456788888887651 1223344
Q ss_pred ccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhh
Q 002071 669 IGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAK 748 (973)
Q Consensus 669 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~ 748 (973)
+..+|+++.|.++.|+. +-+.+....... . -+.+..|....|... .-...
T Consensus 142 l~~lP~vtelHmS~N~~--------------rq~n~Dd~c~e~---------~--s~~v~tlh~~~c~~~-----~w~~~ 191 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSL--------------RQLNLDDNCIED---------W--STEVLTLHQLPCLEQ-----LWLNK 191 (418)
T ss_pred hhcchhhhhhhhccchh--------------hhhccccccccc---------c--chhhhhhhcCCcHHH-----HHHHH
Confidence 55667777777666521 111110000000 0 001111111111100 00000
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCcc-----ccccCccEEEEe
Q 002071 749 RLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWM-----MPLTNLRSLTLE 823 (973)
Q Consensus 749 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~-----~~l~~L~~L~L~ 823 (973)
+..-..++++.++-+..|+..+ ...-++..+++.+.-|+|+.+++ .+|- ..++.|+.|.+.
T Consensus 192 ~~l~r~Fpnv~sv~v~e~PlK~----------~s~ek~se~~p~~~~LnL~~~~i----dswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEGPLKT----------ESSEKGSEPFPSLSCLNLGANNI----DSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred HhHHhhcccchheeeecCcccc----------hhhcccCCCCCcchhhhhccccc----ccHHHHHHHcCCchhheeecc
Confidence 0011234566666666554422 12233556777777888877664 4453 378889999999
Q ss_pred cCCCCCcCCC-------CCCcCcccceecc
Q 002071 824 KCEKCKQIPP-------LGKLSSLEKLMIW 846 (973)
Q Consensus 824 ~~~~~~~l~~-------l~~l~~L~~L~L~ 846 (973)
++.+++.+.. ++.|++++.|+=+
T Consensus 258 ~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 258 ENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcccccccCCcceEEEEeeccceEEecCc
Confidence 8887765432 5677787777643
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.72 E-value=0.0004 Score=85.13 Aligned_cols=152 Identities=19% Similarity=0.232 Sum_probs=86.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc------CceEEE-EEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK------FDKILW-VCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~s~~~~~~ 255 (973)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.++.. +... .+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l---- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL---- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh----
Confidence 368999999999999996542 334569999999999999999873 2211 123333 222210
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh--cCCcEEEEEecCCCCC-------ccCh-hhHHhhhcCCCCCcEEEEE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSI--TGKRFFLVLDDVWDGD-------YMKW-EPFYHCLKNGLPESKILVT 325 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~-------~~~w-~~l~~~l~~~~~gs~iivT 325 (973)
........+.++....+.+.+ .+++.+|++|++..-. ..+- +.+...+..| .-++|-|
T Consensus 255 ----------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 255 ----------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ----------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 000001112222222222222 2568999999996532 1111 1233333332 3566767
Q ss_pred cCChHHHHHh-------CCCCeeeCCCCCHHHHHHHHHHH
Q 002071 326 TRKESVAFMM-------GSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 326 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
|...+....+ .-...+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 6654332211 22358999999999999997544
No 140
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0011 Score=76.29 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=91.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
..+.|+|..|+|||.|++.+++. ....+ ..++|++.. ++..++...+... .. ..+++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yitae------ef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSSE------EFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 35899999999999999999984 33322 245566543 3333444333211 11 123333332
Q ss_pred CcEEEEEecCCCCCc-cChh-hHHhhhcCC-CCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHH
Q 002071 289 KRFFLVLDDVWDGDY-MKWE-PFYHCLKNG-LPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFN 356 (973)
Q Consensus 289 kr~LlVlDdvw~~~~-~~w~-~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (973)
-=+|||||+..... ..|. .+...+... ..|..|||||+.. .+...+...-++.++..+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34788999965432 2232 233333221 2356788888752 233345667789999999999999999
Q ss_pred HHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 357 RIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
+++....-... .++..-|++.+.+..
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnv 482 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCH
Confidence 88754332222 455666666666544
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00068 Score=76.98 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=93.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhcc-Cc-eEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRK-FD-KILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+.|+|.+|+|||+|++.+++. .... .+ .++|++. .++..++...+... ..+ .+.+.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 345999999999999999999984 3333 33 4566654 34555555555321 122 2233333
Q ss_pred CCcEEEEEecCCCCC-ccCh-hhHHhhhcC-CCCCcEEEEEcC-ChHH--------HHHhCCCCeeeCCCCCHHHHHHHH
Q 002071 288 GKRFFLVLDDVWDGD-YMKW-EPFYHCLKN-GLPESKILVTTR-KESV--------AFMMGSTDIIPVQELAEEECWLLF 355 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~-~~~w-~~l~~~l~~-~~~gs~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 355 (973)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. ...- ...+....++.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999997431 1112 233333321 123457888875 3221 112344568899999999999999
Q ss_pred HHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 356 NRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
.+.+......-. .++...|++.+.|.--
T Consensus 273 ~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 273 RKMLEIEHGELP----EEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHhcCCCCC----HHHHHHHHhccccCHH
Confidence 988753322111 4567778888777543
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00088 Score=78.70 Aligned_cols=196 Identities=14% Similarity=0.163 Sum_probs=111.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..++.+.+.+... .-.+.+-++|..|+||||+|+.+.+.-.-....+ ..++..-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 46999999999998888542 2346678999999999999998876311000000 00111111111111
Q ss_pred HHh-------cCC-CCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc-CChHHH
Q 002071 263 EAL-------DVS-SSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT-RKESVA 332 (973)
Q Consensus 263 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt-r~~~v~ 332 (973)
..- ... .....+..++.+.+... ..+++-++|+|++...+....+.+...+..-...+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 100 000 00111222222222211 13556689999998777667777888876655566666555 444444
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch-HHHHHHHh
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP-LTTKAIGS 394 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 394 (973)
.. ......+++.+++.++....+...+...+...+ .+....|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33 233568889999999988888765543322111 345677889999866 45555433
No 143
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.69 E-value=0.00041 Score=76.05 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=86.5
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
-.+++|.+...+.+..++... ...+++.++|++|+||||+|+.+++. ... ....++.+. .... ..+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~-~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID-FVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-HHHHH
Confidence 357899999999999988532 23568888999999999999999873 221 123444433 1111 11111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChH-HHHH-hCCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKES-VAFM-MGST 338 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 338 (973)
+..+... ..+.+.+-++|+|++... .....+.+...+.....++++|+||.... +... ....
T Consensus 88 l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 001234568899999765 22223445554555556778888886542 1111 1223
Q ss_pred CeeeCCCCCHHHHHHHHHH
Q 002071 339 DIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 339 ~~~~l~~L~~~~~~~lf~~ 357 (973)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777777777666554
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0014 Score=76.20 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=111.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.---...... ..+.... ..+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~----~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECS----SCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccch----HHHHHH
Confidence 46899999999999988542 24567889999999999999998773211110000 0000000 001111
Q ss_pred HHhcC-----CCCCCCcHHHHHHHH---HH-HhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH
Q 002071 263 EALDV-----SSSGLGEFQSLLKTI---SK-SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA 332 (973)
Q Consensus 263 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (973)
..-.. ........+++.+.. .. -..+++-++|+|++...+...++.+...+......+.+|++|.. ..+-
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 000011223322211 11 12456678999999887766777788777765566677666643 3333
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
.. ......+++.+++.++-.+.+.+.+...+...+ .+....|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22 223457899999999998888877644332222 455677889999988544
No 145
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.65 E-value=8.3e-06 Score=92.76 Aligned_cols=83 Identities=28% Similarity=0.351 Sum_probs=44.0
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..++.|..|++..|. +..+...+..+.+|++|+|++|.|+.+.. +..|..|+.|++.+|. +..++. +..++
T Consensus 91 l~~~~~l~~l~l~~n~-----i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-----IEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISG-LESLK 162 (414)
T ss_pred cccccceeeeeccccc-----hhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccC-Cccch
Confidence 4455566666666532 22333225556666666666666655532 4555556666666655 444432 44455
Q ss_pred CcceeecCCCC
Q 002071 674 NMKHLLDDKTD 684 (973)
Q Consensus 674 ~L~~L~l~~~~ 684 (973)
+|+.+++++|.
T Consensus 163 ~L~~l~l~~n~ 173 (414)
T KOG0531|consen 163 SLKLLDLSYNR 173 (414)
T ss_pred hhhcccCCcch
Confidence 56666665553
No 146
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.62 E-value=1.1e-05 Score=91.78 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=35.0
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCcc-ccCCC
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQG-IGKLV 673 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~ 673 (973)
..+.+|++|++++|.++. + ..+..+..|+.|++++|.|..++. +..+.+|+.+++++|. +..++.. +..+.
T Consensus 115 ~~~~~L~~L~ls~N~I~~-----i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~ 186 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITK-----L-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELI 186 (414)
T ss_pred hhhhcchheecccccccc-----c-cchhhccchhhheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhhhhhcc
Confidence 344455555555533321 2 223344445555555555444432 2334455555555544 3333322 24444
Q ss_pred CcceeecCCC
Q 002071 674 NMKHLLDDKT 683 (973)
Q Consensus 674 ~L~~L~l~~~ 683 (973)
+|+.+++.+|
T Consensus 187 ~l~~l~l~~n 196 (414)
T KOG0531|consen 187 SLEELDLGGN 196 (414)
T ss_pred chHHHhccCC
Confidence 4444444444
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.61 E-value=0.00069 Score=69.35 Aligned_cols=183 Identities=16% Similarity=0.096 Sum_probs=112.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceE-EEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKI-LWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~~s~~~~~~~~~~~i 261 (973)
.+++|-+..+.-+.+.+.. ....+...+|++|.|||+-|..++..---.+.|.++ .=.++|...... +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr-- 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR-- 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh--
Confidence 4688998888888888864 357789999999999999998887631113445433 223444432221 000
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHh--cCCc-EEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-HHHHh-C
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSI--TGKR-FFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-VAFMM-G 336 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~ 336 (973)
....+...+........ .-++ -.+|||+++....+.|..++..+.+....++.|+.+..-. +-..+ .
T Consensus 107 --------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 107 --------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred --------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 01111111111111000 1123 4788999999989999999999888766777665554432 22111 2
Q ss_pred CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 337 STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
-..-|..++|.+++...-+...+-.++...+ .+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 2457889999999988888777654443333 445677888888754
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.61 E-value=0.0013 Score=75.55 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=92.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+.|+|.+|+|||+|++.+.+. ....+ ..++|++.. ++...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 356899999999999999999984 43443 235566443 2333344443211 112 2333333
Q ss_pred CCcEEEEEecCCCCCccC-h-hhHHhhhcC-CCCCcEEEEEcCChH---------HHHHhCCCCeeeCCCCCHHHHHHHH
Q 002071 288 GKRFFLVLDDVWDGDYMK-W-EPFYHCLKN-GLPESKILVTTRKES---------VAFMMGSTDIIPVQELAEEECWLLF 355 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~-w-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 355 (973)
+.-+|||||+....... + +.+...+.. ...|..||+||.... +...+....++++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 24489999996532111 1 233333321 123455888876532 1223444568999999999999999
Q ss_pred HHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 356 NRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
.+.+......-. .++...|++.+.|..-
T Consensus 290 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 290 KKKAEEEGIDLP----DEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHHcCCCCC----HHHHHHHHcCcCCCHH
Confidence 998754322111 4567778888888765
No 149
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.61 E-value=0.00039 Score=77.82 Aligned_cols=181 Identities=17% Similarity=0.131 Sum_probs=98.1
Q ss_pred cCCCceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc
Q 002071 180 IDEEEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF 252 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 252 (973)
....++.|+++.++++.+.+..+-. -+-...+-|.++|++|.|||++|+.+++. .... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh--
Confidence 3345789999999999887642111 01234567899999999999999999873 2222 232221
Q ss_pred cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCC-----------ccChhhHHhhhc--CC--
Q 002071 253 EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGD-----------YMKWEPFYHCLK--NG-- 316 (973)
Q Consensus 253 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~-----------~~~w~~l~~~l~--~~-- 316 (973)
.++ .....+ ........+.+.. .....+|+||+++.-. ...+..+...+. ++
T Consensus 199 --~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 111110 0111122222222 3457899999996421 111122333332 11
Q ss_pred -CCCcEEEEEcCChHHH-HH-hC---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 317 -LPESKILVTTRKESVA-FM-MG---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 317 -~~gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
..+..||.||...... .. .. -...+.+.+.+.++..++|..+...... ....++ ..+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCCC
Confidence 2356777777654321 11 11 1457899999999999999987643221 111222 44566666543
No 150
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00026 Score=77.24 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=30.5
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCC-ccccchhhhccccccEEecCCCCCCcccCc
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQS-IEKLPETLCELYNLQKLDVSDCYGLKELPQ 667 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~-i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~ 667 (973)
..+..++.|++++ +.+..+|. -..+|+.|.+++|. ++.+|..+. .+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~-----c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKD-----CDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCC-----CCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 3455666666665 23333441 12245556665543 445554332 3555555555544444443
No 151
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.0003 Score=65.85 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=53.2
Q ss_pred EEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC-CcE
Q 002071 213 ISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG-KRF 291 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 291 (973)
|.|+|++|+||||+|+.+++.. . ...+.++.+.-.+. ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~---~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--G---FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--T---SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--c---cccccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999842 2 12345544432100 1111222233333332223 489
Q ss_pred EEEEecCCCCCccC-----------hhhHHhhhcCCC---CCcEEEEEcCC
Q 002071 292 FLVLDDVWDGDYMK-----------WEPFYHCLKNGL---PESKILVTTRK 328 (973)
Q Consensus 292 LlVlDdvw~~~~~~-----------w~~l~~~l~~~~---~gs~iivTtr~ 328 (973)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996644333 334444444432 23566777765
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0028 Score=74.16 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=108.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..++.+.+.+... .-.+.+-++|..|.||||+|+.+.........-+ ..+++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 46999999999999988643 2356677899999999999998865211000000 01111111111221
Q ss_pred HHhcCC-----CCCCCcHH---HHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc-CChHHH
Q 002071 263 EALDVS-----SSGLGEFQ---SLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT-RKESVA 332 (973)
Q Consensus 263 ~~l~~~-----~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt-r~~~v~ 332 (973)
...... .......+ ++.+.+... ..+++-++|+|++.......+..+...+........+|++| ....+-
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00111222 222222211 24567788999998776667777777776544455555544 433333
Q ss_pred HH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 333 FM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
.. ......+.+.+++.++....+...+...+...+ .+....|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22 233567889999999998888876643322111 345677888898877533
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0059 Score=66.94 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=85.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
....+.|+|..|.|||.|++.+.+ ....+......++++. +....+++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999999 4455554333333332 2333333333321 1133445554
Q ss_pred CcEEEEEecCCCCCc-cChh-hHHhhhcC-CCCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHH
Q 002071 289 KRFFLVLDDVWDGDY-MKWE-PFYHCLKN-GLPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFN 356 (973)
Q Consensus 289 kr~LlVlDdvw~~~~-~~w~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (973)
.-=++++||++.-.. +.|+ .+...|-. ...|-.||+|++.. .....+...-++++.+.+.+.....+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 344888999965321 1232 23333322 12344899998642 344456677899999999999999999
Q ss_pred HHhccCC
Q 002071 357 RIAFFGR 363 (973)
Q Consensus 357 ~~~~~~~ 363 (973)
+++....
T Consensus 255 kka~~~~ 261 (408)
T COG0593 255 KKAEDRG 261 (408)
T ss_pred HHHHhcC
Confidence 8765443
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0018 Score=70.33 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=67.7
Q ss_pred CCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-HH-HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCc
Q 002071 288 GKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-VA-FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPI 365 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (973)
+++-++|+|+++..+....+.+...+..-..++.+|+||.+.. +. ....-...+.+.+++.++..+.+...... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-SD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-CC-
Confidence 4555667899998887788888888876556777777777653 32 22333678999999999999998765311 11
Q ss_pred ccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 366 EECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.+.+..++..++|.|..+..+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 223456788999999755444
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=9.2e-05 Score=53.47 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=33.8
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccch
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPE 643 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~ 643 (973)
++|++|++++ +.+.++|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~-----N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-----NQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETS-----SS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccC-----CCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4799999999 5566688889999999999999999987754
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.51 E-value=0.0024 Score=64.42 Aligned_cols=109 Identities=20% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 181 DEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
.-++++|.+..++.+++-...-.. .....-+-++|..|.|||++++.+.+. +...- .--|.|.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~----------- 87 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVS----------- 87 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEEC-----------
Confidence 346799999999888774432211 123456778999999999999999873 22211 1112222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC-ccChhhHHhhhcCC
Q 002071 261 IVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD-YMKWEPFYHCLKNG 316 (973)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~w~~l~~~l~~~ 316 (973)
..+..++..+.+.++. ...||+|++||+.-+. ...+..+++.|..+
T Consensus 88 --------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 88 --------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGG 134 (249)
T ss_pred --------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCc
Confidence 1223344555555442 4679999999985432 23456677766543
No 157
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.0005 Score=72.49 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=60.8
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
..+.++|.+|+|||+||..+++. .......++++++ .+++..|........ .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45899999999999999999995 3333344566653 334555544433211 111222 233344333
Q ss_pred EEEEEecCCCCCccChhh--HHhhhcCC-CCCcEEEEEcCCh
Q 002071 291 FFLVLDDVWDGDYMKWEP--FYHCLKNG-LPESKILVTTRKE 329 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~~--l~~~l~~~-~~gs~iivTtr~~ 329 (973)
||||||+.......|.. +...+... ..|..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445643 44333321 3566799998753
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.00098 Score=82.21 Aligned_cols=154 Identities=22% Similarity=0.197 Sum_probs=87.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh---hhccC-ceEEEEEeCccccHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE---VNRKF-DKILWVCVSEAFEEFRIA 258 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 258 (973)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999997542 23456999999999999999877421 11111 344553 1 221111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCC--------ccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 259 RAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGD--------YMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~--------~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
.+.. ...+.++....+.+.+ +.++.+|++|++..-. .+.-+.+...+..+ .-++|.+|...
T Consensus 248 -------ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred -------ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111 1123333333333332 3568999999995211 01112233333322 24666666665
Q ss_pred HHHHHh-------CCCCeeeCCCCCHHHHHHHHHH
Q 002071 330 SVAFMM-------GSTDIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 330 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~ 357 (973)
...... .....+.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 543221 2235678888999998888764
No 159
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.47 E-value=0.00083 Score=81.81 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=87.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh---hhccC-ceEEEEEeCccccHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE---VNRKF-DKILWVCVSEAFEEFRIA 258 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 258 (973)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++... +...+ +..+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH-
Confidence 368999999999999986542 23457999999999999999987421 11111 334443 1 11111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCC---------ccChhhHHhhhcCCCCCcEEEEEcCC
Q 002071 259 RAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGD---------YMKWEPFYHCLKNGLPESKILVTTRK 328 (973)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~---------~~~w~~l~~~l~~~~~gs~iivTtr~ 328 (973)
+.. .....+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+...+..+ .-++|-+|..
T Consensus 250 ---~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred ---hhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 100 000112333333333333 3467899999996321 11122233333322 2355555554
Q ss_pred hHHHHH------h-CCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 329 ESVAFM------M-GSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 329 ~~v~~~------~-~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
.+.... + .--..+.+.+++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 332111 1 113478999999999999998654
No 160
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0045 Score=66.83 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=112.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh-------------hccCceEEEEEeC
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV-------------NRKFDKILWVCVS 249 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~s 249 (973)
.+++|-+..++.+.+.+... .-.+..-++|..|+||+++|..+.+.--- .....-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 35889999999999988542 23578999999999999999877553110 1112223444211
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEE
Q 002071 250 EAFEEFRIARAIVEALD--VSSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKI 322 (973)
Q Consensus 250 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~i 322 (973)
...+-..+...-++..+ .........++. +.+.+.+ .+++-++|+|++...+....+.+...+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 111112223332 2333333 3677899999998877777778888875444 3455
Q ss_pred EEEcC-ChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 323 LVTTR-KESVAFM-MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 323 ivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
|++|. ...+-.. ..-...+++.++++++..+.+.+....... ......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHH
Confidence 55554 3333322 233678999999999999999886421110 11135788999999975543
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.0008 Score=63.69 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=47.6
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC-
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK- 289 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 289 (973)
..+.|+|.+|+||||+|+.++.. .......++++..+........... ..... ..............+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVG-GKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhh-ccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999874 2222234566655443322222111 01111 1111122222233444444433
Q ss_pred cEEEEEecCCCCC
Q 002071 290 RFFLVLDDVWDGD 302 (973)
Q Consensus 290 r~LlVlDdvw~~~ 302 (973)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999998754
No 162
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.00063 Score=74.25 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=75.2
Q ss_pred ccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcC
Q 002071 752 LDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQI 831 (973)
Q Consensus 752 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 831 (973)
+..+.+++.|+++.|...+. + ..|++|++|.+++|.....+|..+ .++|+.|.+++|.....+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL------------P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL------------P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc------------C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 45567778888776643211 1 134568888887765444456544 357788888877544444
Q ss_pred CCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCC
Q 002071 832 PPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLK 911 (973)
Q Consensus 832 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~ 911 (973)
| ++|+.|.+.+ .....+ ....++|+.|.+.+......+.. +....++|+.|.|.+|..+
T Consensus 111 P-----~sLe~L~L~~-n~~~~L--------~~LPssLk~L~I~~~n~~~~~~l------p~~LPsSLk~L~Is~c~~i- 169 (426)
T PRK15386 111 P-----ESVRSLEIKG-SATDSI--------KNVPNGLTSLSINSYNPENQARI------DNLISPSLKTLSLTGCSNI- 169 (426)
T ss_pred c-----cccceEEeCC-CCCccc--------ccCcchHhheecccccccccccc------ccccCCcccEEEecCCCcc-
Confidence 4 3566666542 111111 01234566666643221111111 1112357888888888654
Q ss_pred CCCCCCCCCCCcceEEEccC
Q 002071 912 ALPDHFHQMTTLKELYILGC 931 (973)
Q Consensus 912 ~lp~~l~~l~~L~~L~i~~c 931 (973)
.+|..+. .+|+.|+++.|
T Consensus 170 ~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 170 ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cCccccc--ccCcEEEeccc
Confidence 3554333 57888887765
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0086 Score=64.39 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=67.0
Q ss_pred CCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHH-HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCc
Q 002071 288 GKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVA-FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPI 365 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (973)
+++-++|||++...+...-+.+...+..-..++.+|++|... .+. ....-...+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 567799999998877666677777776655677777777653 333 223336688999999999998887531 11
Q ss_pred ccchhHHHHHHHHHHhcCCchHHHHHHH
Q 002071 366 EECVKLEKIGRKIAGKCRGLPLTTKAIG 393 (973)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~GlPLai~~~~ 393 (973)
...+..++..++|.|+.+..+.
T Consensus 188 ------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225677999999998665443
No 164
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.32 E-value=0.0044 Score=70.66 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=89.7
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc-----CceEEEEEeCc
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK-----FDKILWVCVSE 250 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~ 250 (973)
.++.|.+..++++.+.+..+-. .+-...+-+.++|++|.|||++|+.+++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4688899999888887532100 01123456899999999999999999984 2222 22344554443
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCCc-------cCh-----hhHHhhhcCC-
Q 002071 251 AFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGDY-------MKW-----EPFYHCLKNG- 316 (973)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~-------~~w-----~~l~~~l~~~- 316 (973)
.. ++....+ ........+.+..++.. .+++.+|+||+++..-. ... ..+...+...
T Consensus 260 ~e--------Ll~kyvG--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 PE--------LLNKYVG--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred hh--------hcccccc--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 21 1111000 00011122222222222 35789999999964210 111 1233323221
Q ss_pred -CCCcEEEEEcCChHHHH-H-hC---CCCeeeCCCCCHHHHHHHHHHHhc
Q 002071 317 -LPESKILVTTRKESVAF-M-MG---STDIIPVQELAEEECWLLFNRIAF 360 (973)
Q Consensus 317 -~~gs~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~ 360 (973)
..+..||.||....... . .. -...+++...+.++..++|..+..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 13445566665443211 1 11 134689999999999999998863
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.31 E-value=0.0026 Score=62.19 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=61.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 261 (973)
.++||-++.++++--.- .+++..-+.|.||+|+||||-+...++. .....+ +.+.=.++|
T Consensus 27 ~dIVGNe~tv~rl~via------~~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNAS------------ 87 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIA------KEGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNAS------------ 87 (333)
T ss_pred HHhhCCHHHHHHHHHHH------HcCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCc------------
Confidence 46899999888876554 2446788999999999999988777662 111112 233323333
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhc-------CCcEEEEEecCCCCCccChhhHHhh
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSIT-------GKRFFLVLDDVWDGDYMKWEPFYHC 312 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~-------~kr~LlVlDdvw~~~~~~w~~l~~~ 312 (973)
+....+-...+++.+-+ ++--.+|||..++....+-..++..
T Consensus 88 ---------deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 88 ---------DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred ---------cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 23334444445544433 4455788999877654444444433
No 166
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00014 Score=70.93 Aligned_cols=34 Identities=29% Similarity=0.637 Sum_probs=27.4
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhh-ccCceEEE
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVN-RKFDKILW 245 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 245 (973)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854333 45677775
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=1.3e-05 Score=89.90 Aligned_cols=83 Identities=28% Similarity=0.390 Sum_probs=44.8
Q ss_pred HHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCcccc
Q 002071 592 ELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQGIG 670 (973)
Q Consensus 592 ~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~~i~ 670 (973)
..+.-++.|+.|||++|.+++. ..+..|.+|+.|||++|.+..+|.- ...+ +|+.|.|++|. +..+. ++.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~-gie 251 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLR-GIE 251 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhh-hHH
Confidence 3345555666666666544332 2455566666666666665555531 1222 26666666665 54443 355
Q ss_pred CCCCcceeecCCC
Q 002071 671 KLVNMKHLLDDKT 683 (973)
Q Consensus 671 ~L~~L~~L~l~~~ 683 (973)
+|.+|++||++.|
T Consensus 252 ~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN 264 (1096)
T ss_pred hhhhhhccchhHh
Confidence 6666666666655
No 168
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.009 Score=64.16 Aligned_cols=165 Identities=10% Similarity=0.046 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh-------------------hccCceEEEEEeCcc
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV-------------------NRKFDKILWVCVSEA 251 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~~s~~ 251 (973)
..+++.+.+.. +.-.+.+-++|+.|+||+++|+.+...--- ..|-| ..|+.-..
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~- 83 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK- 83 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-
Confidence 34555555532 234678999999999999999888552100 01112 11221100
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc
Q 002071 252 FEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT 326 (973)
Q Consensus 252 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt 326 (973)
......++++.+ +.+.+ .+++-++|+|++...+....+.+...+..-..++.+|++|
T Consensus 84 -----------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (319)
T PRK06090 84 -----------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVT 145 (319)
T ss_pred -----------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 001123333322 22222 3556789999998888778888888887666677777766
Q ss_pred CCh-HHH-HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 327 RKE-SVA-FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 327 r~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.+. .+- ....-...+.+.+++.++..+.+.... . . ....+++.++|.|+.+..+
T Consensus 146 ~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 146 HNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHH
Confidence 654 333 333446789999999999999887532 1 1 1246788999999876544
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.019 Score=57.88 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=108.1
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC-ccccHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS-EAFEEFRIARAIVEALDVSSSGL--GEFQSLLKTISK 284 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~ 284 (973)
.+..++.++|.-|.|||++.|..... .. =+.++=|.+. +......+...|+..+..+..-. ...++....+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 35679999999999999999944321 11 1122223333 44567778888888887632211 123333444444
Q ss_pred Hh-cCCc-EEEEEecCCCCCccChhhHHhhhcCCCCCc---EEEEEcCCh-------HHHHHhCC-CCe-eeCCCCCHHH
Q 002071 285 SI-TGKR-FFLVLDDVWDGDYMKWEPFYHCLKNGLPES---KILVTTRKE-------SVAFMMGS-TDI-IPVQELAEEE 350 (973)
Q Consensus 285 ~l-~~kr-~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs---~iivTtr~~-------~v~~~~~~-~~~-~~l~~L~~~~ 350 (973)
.. +++| ..+++|+......+..+.++-...-...++ +|+..-..+ .+....+. ... |.+.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 5788 999999998766555555543332111111 244333221 11111111 234 8999999999
Q ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHh
Q 002071 351 CWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGS 394 (973)
Q Consensus 351 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 394 (973)
...++..+..+......-. -.+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHH
Confidence 9999988876553322111 144567789999999999987664
No 170
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00015 Score=86.01 Aligned_cols=131 Identities=24% Similarity=0.322 Sum_probs=82.7
Q ss_pred CcceEEEEEEccCCCC--CCc-cccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc
Q 002071 544 GEKVCHLMLSIHEGAP--FPI-STCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT 620 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~--~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~ 620 (973)
..+++|+.+.....-. .+. ....+|.||+|.+.+..+.. ..+...+.++++|+.||+|+ +.+..+ .
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-----~dF~~lc~sFpNL~sLDIS~-----TnI~nl-~ 189 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-----DDFSQLCASFPNLRSLDISG-----TNISNL-S 189 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-----hhHHHHhhccCccceeecCC-----CCccCc-H
Confidence 3456777665543211 111 22468888888888865422 22445577888888888888 555555 6
Q ss_pred cccCCCCCcEEEecCCCccccc--hhhhccccccEEecCCCCCCccc--C----ccccCCCCcceeecCCCCC
Q 002071 621 NVKRLVHLRYLNLSHQSIEKLP--ETLCELYNLQKLDVSDCYGLKEL--P----QGIGKLVNMKHLLDDKTDS 685 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~~Lp--~~i~~L~~Lq~L~L~~~~~~~~l--p----~~i~~L~~L~~L~l~~~~~ 685 (973)
.|++|++|+.|.+.+=.+..-+ ..+.+|++|++||+|.......- . +--..||+||.||.+++..
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 7888888888888776655322 34677888888888876533221 1 0112378888888887643
No 171
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0062 Score=62.34 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=75.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE--e--Cccc-----c
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC--V--SEAF-----E 253 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--~--s~~~-----~ 253 (973)
..+.++.......+.++.. ..+|.++|.+|.|||+||..+..+.-..+.|+.++-+. + .+.. +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467888888888888843 24999999999999999999877532234454443331 1 1100 1
Q ss_pred HH----HHHHHHHHHhcCCCCCCCcHHHHHH----H----HHHHhcCCcE---EEEEecCCCCCccChhhHHhhhcCCCC
Q 002071 254 EF----RIARAIVEALDVSSSGLGEFQSLLK----T----ISKSITGKRF---FLVLDDVWDGDYMKWEPFYHCLKNGLP 318 (973)
Q Consensus 254 ~~----~~~~~i~~~l~~~~~~~~~~~~~~~----~----l~~~l~~kr~---LlVlDdvw~~~~~~w~~l~~~l~~~~~ 318 (973)
.. -.++-+...+..-- +....+.... . =-.+++|..+ +||+|.+.+.+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 11 12222222221100 0001111100 0 0135667665 999999987654 445555555568
Q ss_pred CcEEEEEcCC
Q 002071 319 ESKILVTTRK 328 (973)
Q Consensus 319 gs~iivTtr~ 328 (973)
+|++|+|--.
T Consensus 203 ~sk~v~~GD~ 212 (262)
T PRK10536 203 NVTVIVNGDI 212 (262)
T ss_pred CCEEEEeCCh
Confidence 9999999654
No 172
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=2.5e-05 Score=69.67 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=44.6
Q ss_pred ccccCCCCCcEEEecCCCccccchhhhcc-ccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccc
Q 002071 620 TNVKRLVHLRYLNLSHQSIEKLPETLCEL-YNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTS 698 (973)
Q Consensus 620 ~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L-~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 698 (973)
..+.+..+|...+|++|.+..+|..+... +.+.+|++.+|. +..+|.++..++.|+.|++..|. +...|..|..|.+
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIK 124 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHh
Confidence 33444555555666666666666554433 356666666665 66666666666666666666553 3344444444444
Q ss_pred cccC
Q 002071 699 LRTL 702 (973)
Q Consensus 699 L~~L 702 (973)
|-.|
T Consensus 125 l~~L 128 (177)
T KOG4579|consen 125 LDML 128 (177)
T ss_pred HHHh
Confidence 4444
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.22 E-value=0.012 Score=72.15 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=86.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....|- -+.++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 458999999999988765321101223358999999999999999999873 333332 2233333333222110
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccC----hhhHHhhhcC--------C-------CCCcEEE
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMK----WEPFYHCLKN--------G-------LPESKIL 323 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----w~~l~~~l~~--------~-------~~gs~ii 323 (973)
. ........+.+.+.+... ..++-+|+||.++...... -..+...+.. . ..+.-+|
T Consensus 393 ---~-~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---R-RTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---C-CceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 000001112233333333 2334488999996643211 1223332221 0 0223344
Q ss_pred EEcCChH-HH-HHhCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 324 VTTRKES-VA-FMMGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 324 vTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
.||.... +. .......++.+.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4554322 11 112334578999999988888877654
No 174
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0027 Score=72.55 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=92.8
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
+.+.+|-++.+++|++.|.-..-...-.-.++++||++|+|||.|++.++. .....| +-++++.-.|..+|=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc---
Confidence 457899999999999999754321233457999999999999999999987 344444 223444444443321
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc----ChhhHHhhhcCC-C------------CCcEEE-
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM----KWEPFYHCLKNG-L------------PESKIL- 323 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~w~~l~~~l~~~-~------------~gs~ii- 323 (973)
.-....-+.. .+.+++.+++. +.+.-+++||.++....+ --..+...|.+- + .=|.|+
T Consensus 394 --GHRRTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 394 --GHRRTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred --cccccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0000001111 12233333332 567889999999653211 112233333211 0 124554
Q ss_pred EEcCCh-H-H-HHHhCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 324 VTTRKE-S-V-AFMMGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 324 vTtr~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
|||-+. + + +..+....++++.+-+++|-.+.-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444332 1 1 2223445688888888888777666554
No 175
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.0013 Score=66.79 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=30.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV 248 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 248 (973)
.-.++|+|..|.|||||+..+.. .....|.++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 45788999999999999999987 36778988877754
No 176
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.18 E-value=0.0042 Score=75.38 Aligned_cols=166 Identities=18% Similarity=0.226 Sum_probs=89.8
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
+.+++|.++.+++|+++|............++.++|++|+||||+|+.++.. ....|- -+.++...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 3468999999999999887432111223457999999999999999999862 322331 23334333333221110
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccC----hhhHHhhhcCC---------------CCCcEE
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMK----WEPFYHCLKNG---------------LPESKI 322 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----w~~l~~~l~~~---------------~~gs~i 322 (973)
+... + .....+.+.+... ....-+++||.++...... ...+...+.+. -...-+
T Consensus 396 -~~~~----g-~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYI----G-SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccC----C-CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0000 0 0112233333332 2234478899996644321 23444444321 122333
Q ss_pred EEEcCChHHHHH-hCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 323 LVTTRKESVAFM-MGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 323 ivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
|.|+....+... .+-..++.+.+++.+|-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444443322211 2334578899999988888877765
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.16 E-value=0.0064 Score=58.89 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=77.0
Q ss_pred cchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh------------------ccCceEEEEEe
Q 002071 187 GRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN------------------RKFDKILWVCV 248 (973)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~~ 248 (973)
|-++..+.+.+.+... .-.+.+-++|..|+||+|+|..+.+.---. +...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 3445566666666432 235578999999999999998876531111 11222333322
Q ss_pred CccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEE
Q 002071 249 SEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKIL 323 (973)
Q Consensus 249 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ii 323 (973)
... ......++.. .+.+.+ .+++=++|+|++.......+..++..+..-..++.+|
T Consensus 76 ~~~------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKK------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTS------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccc------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 211 0012233332 223222 2467789999999988888999999998877889999
Q ss_pred EEcCChH-HH-HHhCCCCeeeCCCCC
Q 002071 324 VTTRKES-VA-FMMGSTDIIPVQELA 347 (973)
Q Consensus 324 vTtr~~~-v~-~~~~~~~~~~l~~L~ 347 (973)
++|++.. +- ....-...+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 22 223334566666553
No 178
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.16 E-value=0.0034 Score=77.37 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=83.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh---cc-CceEE-EEEeCccccHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN---RK-FDKIL-WVCVSEAFEEFRI 257 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-F~~~~-wv~~s~~~~~~~~ 257 (973)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.....-. .. ....+ ++.++.-
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------ 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------ 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------
Confidence 359999999999999996542 3346699999999999999887731100 00 12232 2222211
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHh--cCCcEEEEEecCCCCCc--------cChhhHHhhhcCCCCCcEEEEEcC
Q 002071 258 ARAIVEALDVSSSGLGEFQSLLKTISKSI--TGKRFFLVLDDVWDGDY--------MKWEPFYHCLKNGLPESKILVTTR 327 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~--------~~w~~l~~~l~~~~~gs~iivTtr 327 (973)
. .+. ....+.++....+.+.+ .+++.+|++|++..-.. +.-+.+...+..| .-++|-||.
T Consensus 246 ~-------ag~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt 315 (857)
T PRK10865 246 V-------AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATT 315 (857)
T ss_pred h-------hcc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCC
Confidence 0 000 00112222222222222 25789999999964310 0112222223222 346666666
Q ss_pred ChHHHHHh-------CCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 328 KESVAFMM-------GSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 328 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
..+....+ .--..+.+..-+.++..+++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55532221 112356666668888888886543
No 179
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.02 Score=61.77 Aligned_cols=177 Identities=8% Similarity=0.025 Sum_probs=101.4
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHh-----
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEAL----- 265 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l----- 265 (973)
..+.+.+.+... .-.+.+-+.|+.|+||+++|+.++..---..... ...+..=...+.+...-
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFH 77 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEE
Confidence 345555555322 2457788999999999999998865311100000 00000000111111000
Q ss_pred --cCCCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHHHH-hC
Q 002071 266 --DVSSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVAFM-MG 336 (973)
Q Consensus 266 --~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~ 336 (973)
.........+++..+ +.+.+ .+++-++|+|+++..+....+.+...+..-..++.+|++|.+. .+... ..
T Consensus 78 ~i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 78 ILEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred EEccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000001123333332 22222 3667788999999888778888888887766777777777654 33322 33
Q ss_pred CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 337 STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
-...+.+.++++++..+.+...... . ...+...+..++|.|..+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~----~-----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA----E-----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc----C-----hHHHHHHHHHcCCCHHHH
Confidence 3678999999999999988875411 1 112456678899999643
No 180
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.15 E-value=0.006 Score=68.30 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=87.1
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcE
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRF 291 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 291 (973)
++.|.|+-++||||+++.+... ..+. .+++..-+......-+. +....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~-----------------d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL-----------------DLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH-----------------HHHHHHHHhhccCCc
Confidence 9999999999999999766542 1111 55554433211111001 111111111122788
Q ss_pred EEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHH-----H-hCCCCeeeCCCCCHHHHHHHHHHHhccCCCc
Q 002071 292 FLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAF-----M-MGSTDIIPVQELAEEECWLLFNRIAFFGRPI 365 (973)
Q Consensus 292 LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~-----~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (973)
.|+||.|... ..|+.....+.+..+. +|++|+-+..... . .|-...+.+-||+-.|...+-...+.
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~----- 168 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIE----- 168 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccc-----
Confidence 9999999875 5799988888876665 8999888755332 2 23356889999998887665431000
Q ss_pred ccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 366 EECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
.... ...-+-.-..||.|-++..
T Consensus 169 --~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 --PSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred --hhHH-HHHHHHHHHhCCCcHHHhC
Confidence 0011 1122333456889887754
No 181
>PRK08181 transposase; Validated
Probab=97.14 E-value=0.0013 Score=68.97 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
.-+.++|.+|+|||.||..+.+. .......++|+++ .++...+..... ....+.... .+ .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~----~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIA----KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHH----HH-hcC
Confidence 35899999999999999999873 3233334566654 344444433211 112222222 22 234
Q ss_pred EEEEEecCCCCCccChh--hHHhhhcCCCCCcEEEEEcCCh
Q 002071 291 FFLVLDDVWDGDYMKWE--PFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~--~l~~~l~~~~~gs~iivTtr~~ 329 (973)
=||||||+.......|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999655433342 3444443221124688888754
No 182
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.14 E-value=0.0018 Score=72.70 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=87.2
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.++.|.+..++++.+.+.-.-. -+-...+-+.++|++|.|||++|+.+++. ....| +.+..++
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578999988888877632110 01123456789999999999999999983 33333 2222111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC--------ccC---hhhHHhhh---cC--CCCC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD--------YMK---WEPFYHCL---KN--GLPE 319 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~--------~~~---w~~l~~~l---~~--~~~g 319 (973)
+ .....+ .....+...+.....+.+.+|+||+++... ... ...+...+ .. ...+
T Consensus 253 -L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 111100 001111222222234567899999985311 000 11122222 11 1345
Q ss_pred cEEEEEcCChHHHHH-h-C---CCCeeeCCCCCHHHHHHHHHHHhc
Q 002071 320 SKILVTTRKESVAFM-M-G---STDIIPVQELAEEECWLLFNRIAF 360 (973)
Q Consensus 320 s~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 360 (973)
.+||.||...+.... + . ....+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 1 1 145788999999999999997764
No 183
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00072 Score=68.53 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCC--CCCCCCCcceEEEccCCCccccccCcc
Q 002071 865 AFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD--HFHQMTTLKELYILGCAIPGVRFRNGK 942 (973)
Q Consensus 865 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~--~l~~l~~L~~L~i~~c~~l~~~~~~~~ 942 (973)
.||++..+.+..+| ++.... ..+...+|.+.-|++..+ ++.+... .+..++.|..|.+.++|.+..--..+.
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~----ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESS----EKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred hcccchheeeecCc-ccchhh----cccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence 57777777776664 222211 233446777777777666 4553322 356789999999999987543322111
Q ss_pred ccccccccceeeec
Q 002071 943 QEDLISQRANVYSR 956 (973)
Q Consensus 943 ~~~~i~~~p~i~~~ 956 (973)
..--|...|++++-
T Consensus 271 r~llIaRL~~v~vL 284 (418)
T KOG2982|consen 271 RFLLIARLTKVQVL 284 (418)
T ss_pred eEEEEeeccceEEe
Confidence 11177888888764
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.12 E-value=0.0039 Score=77.22 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=84.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc------CceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK------FDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~~ 256 (973)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+... +... ....+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 359999999999999996542 234558999999999999988773 2111 12333331 1111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-c-CCcEEEEEecCCCCCc----cChhhHHhhhcC-CCC-CcEEEEEcCC
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSI-T-GKRFFLVLDDVWDGDY----MKWEPFYHCLKN-GLP-ESKILVTTRK 328 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~----~~w~~l~~~l~~-~~~-gs~iivTtr~ 328 (973)
+. .+.. ...+.+.....+.+.+ + +++.+|++|++..-.. ..-......|.+ ... .-.+|-+|..
T Consensus 240 l~-------a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 240 LI-------AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred Hh-------hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcH
Confidence 11 0000 0112222222333333 2 4689999999964310 000011122221 122 2456666665
Q ss_pred hHHHHHh-------CCCCeeeCCCCCHHHHHHHHHHH
Q 002071 329 ESVAFMM-------GSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 329 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
......+ .--..+.+...+.++..+++...
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 5442211 12346788989999999988754
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.0026 Score=74.51 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=40.2
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++|-+..++++..++....- .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999998865432 1223468999999999999999999873
No 186
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=0.00012 Score=65.52 Aligned_cols=90 Identities=16% Similarity=0.283 Sum_probs=58.1
Q ss_pred CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhh
Q 002071 567 IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLC 646 (973)
Q Consensus 567 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~ 646 (973)
..+|....+++|.+ ..+++.+-..++.++.|++++ +.+.++|..+..++.||.|+++.|.+...|..|-
T Consensus 52 ~~el~~i~ls~N~f------k~fp~kft~kf~t~t~lNl~~-----neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGF------KKFPKKFTIKFPTATTLNLAN-----NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred CceEEEEecccchh------hhCCHHHhhccchhhhhhcch-----hhhhhchHHHhhhHHhhhcccccCccccchHHHH
Confidence 34455555555554 344555555666777777777 4555677777777777777777777777777777
Q ss_pred ccccccEEecCCCCCCcccCcc
Q 002071 647 ELYNLQKLDVSDCYGLKELPQG 668 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~lp~~ 668 (973)
.|.+|-.|+..++. ...+|-.
T Consensus 121 ~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhHHHhcCCCCc-cccCcHH
Confidence 77777777777665 5555544
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.013 Score=64.09 Aligned_cols=149 Identities=9% Similarity=0.033 Sum_probs=90.8
Q ss_pred ceec-chhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhc--------------------cCce
Q 002071 184 EICG-RVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNR--------------------KFDK 242 (973)
Q Consensus 184 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~ 242 (973)
.++| -+..++.+.+.+... .-.+..-++|+.|+||||+|+.+.+..--.. |.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3556 555666666666432 2467789999999999999988865311111 1121
Q ss_pred EEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCC
Q 002071 243 ILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLP 318 (973)
Q Consensus 243 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~ 318 (973)
. ++... ......+++.+.+... ..+.+-++|+|++...+....+.+...+..-..
T Consensus 81 ~-~i~~~--------------------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 H-LVAPD--------------------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred E-Eeccc--------------------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1 11100 0112233333222211 235566899999987776677778888877667
Q ss_pred CcEEEEEcCChH-HHHH-hCCCCeeeCCCCCHHHHHHHHHHH
Q 002071 319 ESKILVTTRKES-VAFM-MGSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 319 gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
++.+|++|.+.. +... ..-...+++.+++.++..+.+...
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 777777776543 3222 233678999999999998888653
No 188
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.00053 Score=81.56 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=89.0
Q ss_pred CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhh
Q 002071 567 IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLC 646 (973)
Q Consensus 567 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~ 646 (973)
-.+|+.|++.|.. .+...|+...-..+|.||.|.+++-.+.... +-.-..++++|+.||+|+++|+.+ ..|+
T Consensus 121 r~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc-HHHh
Confidence 4578888888854 2345677777788899999999985443222 223355788999999999999888 6789
Q ss_pred ccccccEEecCCCCCCcccC--ccccCCCCcceeecCCCCCCCccccc-------CCCccccccCCee
Q 002071 647 ELYNLQKLDVSDCYGLKELP--QGIGKLVNMKHLLDDKTDSLGHMPVG-------IGRLTSLRTLVEF 705 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~-------i~~l~~L~~L~~~ 705 (973)
+|+|||+|.+++-. ++.-+ ..+..|++|++||++....... +.. -..|++|+.|+..
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecC
Confidence 99999999988755 33222 3567899999999987643222 111 1236677777644
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.09 E-value=0.0051 Score=75.84 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=78.1
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. .-..-...+.+.++.-...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-----
Confidence 3589999999888888754210 01223357889999999999999999863 2111223444555432211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhc-CCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcC
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSIT-GKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTR 327 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr 327 (973)
.....+.+.+++....++ ...+.+.++ ...-+|+||++.......+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222222111111 112223332 223599999998877778888887775541 1233777877
Q ss_pred C
Q 002071 328 K 328 (973)
Q Consensus 328 ~ 328 (973)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 190
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0034 Score=75.52 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=86.1
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh---hcc-CceEEEEEeCccccHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV---NRK-FDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~-F~~~~wv~~s~~~~~~~~~~ 259 (973)
.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..... ... .+..+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 58999999999999997642 233468999999999999998863211 111 14444431 11111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCC--------CccChhh-HHhhhcCCCCCcEEEEEcCCh
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDG--------DYMKWEP-FYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~--------~~~~w~~-l~~~l~~~~~gs~iivTtr~~ 329 (973)
+ .+. .-..+.+.....+.+.+ +.+..+|+||++..- ...+... +...+.. ..-++|-+|...
T Consensus 254 --l---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~ 325 (758)
T PRK11034 254 --L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQ 325 (758)
T ss_pred --h---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChH
Confidence 1 110 01112233333333333 355789999999632 1111111 2222322 234566666554
Q ss_pred HHHHHh-------CCCCeeeCCCCCHHHHHHHHHHH
Q 002071 330 SVAFMM-------GSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 330 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
+....+ .--..+.+++.+.++..+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 432221 11247899999999999998864
No 191
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0049 Score=70.16 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=67.1
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
+.+.+|.++-+++|++.+.-..-.+.-+-+++..+|++|||||.+|+.++. .....| +-++|+.-.|..+|-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc-
Confidence 467899999999999998754322344678999999999999999999987 343344 23455555555433100
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWD 300 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 300 (973)
....-+ .-.+.+++.|++. +-..-|+.||.|+.
T Consensus 484 ----RRTYVG-AMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 ----RRTYVG-AMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----ceeeec-cCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 000001 1112334444333 45577888999853
No 192
>PRK12377 putative replication protein; Provisional
Probab=97.05 E-value=0.0012 Score=68.28 Aligned_cols=102 Identities=20% Similarity=0.128 Sum_probs=58.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.++|.+|+|||+||..+++. .......++++++. +++..|-..... ...... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cC
Confidence 357899999999999999999984 33334446777654 334444333211 111111 22222 35
Q ss_pred cEEEEEecCCCCCccChh--hHHhhhcCC-CCCcEEEEEcCC
Q 002071 290 RFFLVLDDVWDGDYMKWE--PFYHCLKNG-LPESKILVTTRK 328 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~--~l~~~l~~~-~~gs~iivTtr~ 328 (973)
-=||||||+.......|. .+...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 669999999655444564 344444322 223347788764
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.018 Score=67.95 Aligned_cols=134 Identities=16% Similarity=0.309 Sum_probs=85.9
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC---ceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF---DKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 256 (973)
..++|-+..++.+.+.+...-. +.+....+...+|+.|||||-||+.++. .-| +..+-+++|+-.....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHHHHHHH
Confidence 3588888888888887753211 1234566778899999999999999876 234 3455555555433322
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcE-EEEEecCCCCCccChhhHHhhhcCCC----C-------CcEEEE
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRF-FLVLDDVWDGDYMKWEPFYHCLKNGL----P-------ESKILV 324 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~w~~l~~~l~~~~----~-------gs~iiv 324 (973)
+..+-+.+++-...++ -..|-+..+.++| +|.||.|....++..+.+...|.+|. . .+-||+
T Consensus 566 -----VSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 566 -----VSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred -----HHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 2334444443322222 2345566677777 88899998888888888888887653 2 345667
Q ss_pred EcC
Q 002071 325 TTR 327 (973)
Q Consensus 325 Ttr 327 (973)
||.
T Consensus 640 TSN 642 (786)
T COG0542 640 TSN 642 (786)
T ss_pred ecc
Confidence 765
No 194
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.01 E-value=0.00064 Score=66.84 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=51.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
..-+.++|.+|+|||.||..+.+.. +. +=..+.|++++ +++..+- ... .....++.. +.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~-~g~~v~f~~~~------~L~~~l~----~~~-~~~~~~~~~----~~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IR-KGYSVLFITAS------DLLDELK----QSR-SDGSYEELL----KRLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HH-TT--EEEEEHH------HHHHHHH----CCH-CCTTHCHHH----HHHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-cc-CCcceeEeecC------ceecccc----ccc-cccchhhhc----Cccc-c
Confidence 3569999999999999999998742 22 22345666543 3443332 211 111222222 2222 2
Q ss_pred cEEEEEecCCCCCccChhh--HHhhhcCC-CCCcEEEEEcCCh
Q 002071 290 RFFLVLDDVWDGDYMKWEP--FYHCLKNG-LPESKILVTTRKE 329 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~--l~~~l~~~-~~gs~iivTtr~~ 329 (973)
-=||||||+-......|.. +...+... ..+ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3578899997655444432 33333221 123 588888743
No 195
>PHA00729 NTP-binding motif containing protein
Probab=97.01 E-value=0.0061 Score=61.33 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999873
No 196
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.0053 Score=68.41 Aligned_cols=159 Identities=15% Similarity=0.110 Sum_probs=86.4
Q ss_pred CCceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 182 EEEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
-.++.|.+..+++|.+.+..+-. -+-...+-|.++|++|.|||++|+.+++. ....| +.+..+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s----- 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS----- 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH-----
Confidence 34689999888888776532100 01224567889999999999999999884 22222 222111
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC------cc----Ch-hhHHhhh---cC--CCC
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD------YM----KW-EPFYHCL---KN--GLP 318 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~----~w-~~l~~~l---~~--~~~ 318 (973)
.+ .....+ .....+.+.+.......+.+|+||+++... .. .. ..+...+ .. ...
T Consensus 214 -~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 -EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred -HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 111110 011112222222334678899999985320 00 01 1122222 21 224
Q ss_pred CcEEEEEcCChHHH-HH-hC---CCCeeeCCCCCHHHHHHHHHHHhc
Q 002071 319 ESKILVTTRKESVA-FM-MG---STDIIPVQELAEEECWLLFNRIAF 360 (973)
Q Consensus 319 gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~ 360 (973)
+..||.||...+.. .. .. -...+.+...+.++..++|.....
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 56788888755422 11 22 245688888899998888886653
No 197
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.00 E-value=0.0086 Score=73.09 Aligned_cols=123 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|-+..++.+.+.+..... ..+....++.++|+.|+|||+||+.++.. . +...+.+++++-.+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~~-- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHTV-- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcccH--
Confidence 3578988888888887763210 01223457889999999999999999873 2 334566666553322111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhc-CCcEEEEEecCCCCCccChhhHHhhhcCC
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSIT-GKRFFLVLDDVWDGDYMKWEPFYHCLKNG 316 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~w~~l~~~l~~~ 316 (973)
.+.++. .++....++ ...+.+.++ ...-+++||+++....+.++.+...+..+
T Consensus 527 --~~lig~-~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 527 --SRLIGA-PPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred --HHHhcC-CCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 111221 111111111 112333333 33459999999988877888888877654
No 198
>PRK06921 hypothetical protein; Provisional
Probab=96.97 E-value=0.0037 Score=65.79 Aligned_cols=99 Identities=23% Similarity=0.343 Sum_probs=55.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhcc-CceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRK-FDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
...+.++|..|+|||+||..+++. .... -..++|+++. +++..+...+ +.....+. .+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 467899999999999999999984 3333 3456677643 2222222221 11111222 22 2
Q ss_pred CcEEEEEecCCC-----CCccChhh--HHhhhcCC-CCCcEEEEEcCC
Q 002071 289 KRFFLVLDDVWD-----GDYMKWEP--FYHCLKNG-LPESKILVTTRK 328 (973)
Q Consensus 289 kr~LlVlDdvw~-----~~~~~w~~--l~~~l~~~-~~gs~iivTtr~ 328 (973)
+-=||||||+.. +....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 356999999932 22334543 44443321 234568888864
No 199
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.96 E-value=0.0049 Score=66.68 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCce-EEEEEeCc-cccHHHHHHHHHHHhcCC
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDK-ILWVCVSE-AFEEFRIARAIVEALDVS 268 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~ 268 (973)
-..++++.+..-. .-..+.|+|.+|+|||||++.+++.. ..++-+. ++|+.+.+ ..++.++.+.+...+..+
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 4456888887543 22356999999999999999988742 1223344 46777654 456788888888877654
Q ss_pred CCCCCcHH-----HHHHHHHHHh--cCCcEEEEEecCC
Q 002071 269 SSGLGEFQ-----SLLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 269 ~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..+..... .....+.+++ ++++.+||+|++.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 33222211 1122223333 5999999999984
No 200
>PRK06526 transposase; Provisional
Probab=96.95 E-value=0.0017 Score=67.78 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
..-+.|+|.+|+|||+||..+.+... ...+ .+.|++ ..++...+..... . .. ....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~t------~~~l~~~l~~~~~----~-~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFAT------AAQWVARLAAAHH----A-GR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhhh------HHHHHHHHHHHHh----c-Cc---HHHHHHHh--cc
Confidence 34689999999999999999987422 2222 234432 2334444433211 0 11 11222222 23
Q ss_pred cEEEEEecCCCCCccChh--hHHhhhcCC-CCCcEEEEEcCCh
Q 002071 290 RFFLVLDDVWDGDYMKWE--PFYHCLKNG-LPESKILVTTRKE 329 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~--~l~~~l~~~-~~gs~iivTtr~~ 329 (973)
.-+|||||+.......|. .+...+... ..+ .+|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 458999999754333332 344444321 234 488888754
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.0039 Score=65.51 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
..+.|+|.+|+|||+||..+.+... ... ..+.++++ .++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 4677999999999999999976322 222 23344432 2333333222110 01 112222222 344
Q ss_pred EEEEEecCCCCCccChh--hHHhhhcCC-CCCcEEEEEcCCh
Q 002071 291 FFLVLDDVWDGDYMKWE--PFYHCLKNG-LPESKILVTTRKE 329 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~--~l~~~l~~~-~~gs~iivTtr~~ 329 (973)
-++|+||+.......+. .+...+... ..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999764433343 344444321 2344 88888643
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.91 E-value=0.0032 Score=77.31 Aligned_cols=136 Identities=23% Similarity=0.316 Sum_probs=79.5
Q ss_pred CceecchhHHHHHHHHhcCCC---ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCES---SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|-+..++.+.+.+.... ........++.++|+.|+|||.||+.+... .-+.....+-+++++-.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~--- 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHT--- 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhh---
Confidence 468999999999999885421 112334568899999999999999988762 211122223333332221111
Q ss_pred HHHHHhcCCCCCC---CcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEE
Q 002071 260 AIVEALDVSSSGL---GEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVT 325 (973)
Q Consensus 260 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivT 325 (973)
...+-+..++. ...+.+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 641 --~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 641 --VSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred --hccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11222222221 112223333332 455799999998877777888877776553 44567777
Q ss_pred cCC
Q 002071 326 TRK 328 (973)
Q Consensus 326 tr~ 328 (973)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 664
No 203
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.90 E-value=0.0045 Score=66.50 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=70.6
Q ss_pred cchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhc
Q 002071 187 GRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALD 266 (973)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (973)
++....+...+++..-.. ....+-+.++|..|+|||.||..+++.. ...-..+.+++++ +++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 444445555555543221 1234679999999999999999999853 2222345666654 34444444432
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhh--HHhhh-cCC-CCCcEEEEEcCC
Q 002071 267 VSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEP--FYHCL-KNG-LPESKILVTTRK 328 (973)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~--l~~~l-~~~-~~gs~iivTtr~ 328 (973)
. .+..+ .+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~-----~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11222 2222 2 345689999998776677853 44443 322 245568888863
No 204
>CHL00176 ftsH cell division protein; Validated
Probab=96.90 E-value=0.015 Score=68.77 Aligned_cols=177 Identities=16% Similarity=0.110 Sum_probs=94.9
Q ss_pred CceecchhHHHHHHH---HhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELIS---KLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.++.|.++.++++.+ .+..... -+....+-|.++|++|.|||+||+.+++.. . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 468888766655544 3332210 012234568999999999999999998742 1 123333211 1
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC----------ccChhh-HHhhh---cC--CCCCc
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD----------YMKWEP-FYHCL---KN--GLPES 320 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~w~~-l~~~l---~~--~~~gs 320 (973)
+. ..... .....+...+....+..+.+|+||+++.-. ...++. +...+ .. ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 10 00000 011223333444456778999999995421 111222 22222 11 23455
Q ss_pred EEEEEcCChHHHH-Hh-C---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC
Q 002071 321 KILVTTRKESVAF-MM-G---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG 384 (973)
Q Consensus 321 ~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 384 (973)
.||.||...+... .+ . -...+.+...+.++-.++++.++..... .. ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 6777776644322 11 1 2457888888999999999887643211 11 2234567777777
No 205
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.90 E-value=0.0043 Score=76.87 Aligned_cols=136 Identities=17% Similarity=0.246 Sum_probs=79.9
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.+... ....-...+.++++.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 3589999999999998865321 01223467889999999999999999762 2122233444555543221111
Q ss_pred HHHHHhcCCCCCC---CcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEE
Q 002071 260 AIVEALDVSSSGL---GEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVT 325 (973)
Q Consensus 260 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivT 325 (973)
..+.+.+++. .....+...++. ....+|+||++.......+..+...+..+. ..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1222222221 111222222222 233489999999888888888888876542 23347777
Q ss_pred cCC
Q 002071 326 TRK 328 (973)
Q Consensus 326 tr~ 328 (973)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.88 E-value=0.028 Score=59.43 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=59.4
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH--------HH----hcCCCC-CCCcHHHH
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV--------EA----LDVSSS-GLGEFQSL 278 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~--------~~----l~~~~~-~~~~~~~~ 278 (973)
.|.+.|.+|+|||++|+.+.. ... ...+.++++...+..+++.... .+ ...... ....+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 456899999999999999976 221 2345566666555554432210 00 000000 000000
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC----------------CCCcEEEEEcCCh
Q 002071 279 LKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG----------------LPESKILVTTRKE 329 (973)
Q Consensus 279 ~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~----------------~~gs~iivTtr~~ 329 (973)
...+.... .+...+++|++...+.+.+..+...+..+ .++.+||+|+...
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 00111111 13468999999887666666666666332 1356788888754
No 207
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0078 Score=62.14 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=58.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.++|.+|+|||+||..+++.. ...-..++++++ .++...+-..... ....... +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 4578999999999999999999853 222335566643 3444444333321 1111222 233344 3
Q ss_pred cEEEEEecCCCCCccChhh--HHhhhcCC-CCCcEEEEEcCC
Q 002071 290 RFFLVLDDVWDGDYMKWEP--FYHCLKNG-LPESKILVTTRK 328 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~--l~~~l~~~-~~gs~iivTtr~ 328 (973)
.=+|||||+.......|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588899997765556653 33333221 223457777764
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.044 Score=59.74 Aligned_cols=177 Identities=10% Similarity=0.057 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCc--------eEEEEEeCccccHHHHHHHHH
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFD--------KILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..+++.+.+.. +.-.+-+-+.|+.|+||+|+|..++..---...-+ ..-++.....+|+..
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~------ 78 (334)
T PRK07993 10 DYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT------ 78 (334)
T ss_pred HHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE------
Confidence 45666666643 23567888999999999999988755210000000 000000001111100
Q ss_pred HHhcCCC-CCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHHHH-
Q 002071 263 EALDVSS-SGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVAFM- 334 (973)
Q Consensus 263 ~~l~~~~-~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~~- 334 (973)
+.... .....+++..+ +.+.+ .+++-++|+|+++..+....+.+...+..-..++.+|++|.+. .+...
T Consensus 79 --i~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 79 --LTPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred --EecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 01123333333 22222 3677899999998887777888888887666677777776653 34322
Q ss_pred hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 335 MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
..-...+.+.+++.++..+.+..... . . .+.+..++..++|.|..+.
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~~--~---~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREVT--M---S----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHccC--C---C----HHHHHHHHHHcCCCHHHHH
Confidence 33356889999999999988865421 1 1 2225678999999996443
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.78 E-value=0.0032 Score=62.87 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=63.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHhcC
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSG--LGEFQSLLKTISKSITG 288 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 288 (973)
.++.|+|..|.||||+|...... ...+-..++.+. ..++.......++..++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999888773 333333333331 2222222233455555532211 2334455555555 334
Q ss_pred CcEEEEEecCCCCCccChhhHHhhhcC-CCCCcEEEEEcCChH
Q 002071 289 KRFFLVLDDVWDGDYMKWEPFYHCLKN-GLPESKILVTTRKES 330 (973)
Q Consensus 289 kr~LlVlDdvw~~~~~~w~~l~~~l~~-~~~gs~iivTtr~~~ 330 (973)
+.-+||+|.+..-+. +.+...+.. ...|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDK---EQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCH---HHHHHHHHHHHHcCCeEEEEecCcc
Confidence 555899999944321 223333333 346788999988744
No 210
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.77 E-value=0.0001 Score=83.10 Aligned_cols=125 Identities=26% Similarity=0.160 Sum_probs=85.2
Q ss_pred ccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCcc-ccCCCCccee
Q 002071 600 LRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHL 678 (973)
Q Consensus 600 Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L 678 (973)
|.+.+.++|.+ ..+-.++.-+++|+.|||++|++...- .+..|++|++|||+.|. +..+|.- ...+ +|+.|
T Consensus 166 L~~a~fsyN~L-----~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 166 LATASFSYNRL-----VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred HhhhhcchhhH-----HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheee
Confidence 55566666433 334466777889999999999988665 68889999999999987 8777752 2334 38999
Q ss_pred ecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeec
Q 002071 679 LDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRR 737 (973)
Q Consensus 679 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 737 (973)
.+.+|.... -.+|.+|.+|+.|++..+...+.. --..+..|..|..|.+-+|..
T Consensus 238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hs---eL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHS---ELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHh--hhhHHhhhhhhccchhHhhhhcch---hhhHHHHHHHHHHHhhcCCcc
Confidence 998884322 257889999999988776655410 011233455566666666654
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.03 Score=60.85 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH-HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCc
Q 002071 288 GKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA-FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPI 365 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (973)
+++-++|+|+++..+...++.+...+..-.+++.+|++|.+ ..+- ....-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 56678999999998888889998888766667766666655 4433 223345789999999999999987642 1
Q ss_pred ccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 366 EECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.. ...++..++|.|..+..+
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755443
No 212
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.0033 Score=61.58 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=40.4
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhh-hccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEV-NRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
.|.|+|++|+||||||+.+.....+ .-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998763211 1234555552111 11223455556666676666
Q ss_pred EEEEEecCCC
Q 002071 291 FFLVLDDVWD 300 (973)
Q Consensus 291 ~LlVlDdvw~ 300 (973)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.74 E-value=0.0056 Score=62.47 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=37.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
+.-.++-|+|.+|+|||++|.++... .......++|++... +....+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 35689999999999999999998763 333456889999876 65555443
No 214
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.73 E-value=0.023 Score=66.23 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=92.5
Q ss_pred CCCceecchhHHHHHHHHhc---CCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 181 DEEEICGRVSEKNELISKLL---CESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
.-.+++|.+..++++.+.+. .... .+....+-+.++|++|.|||++|+.+++.. ... ++.++..
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~--- 122 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS--- 122 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH---
Confidence 33568898876665554332 1110 012234458899999999999999998742 112 2333211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC----------ccChhhHH----hhhc--CCCC
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD----------YMKWEPFY----HCLK--NGLP 318 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~w~~l~----~~l~--~~~~ 318 (973)
++. ..... .....+...+.......+.+|+||+++.-. ...+.... ..+. ....
T Consensus 123 -~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 -DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred -HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 11100 011222233333334567899999995421 01122221 1111 1223
Q ss_pred CcEEEEEcCChH-HHHHh----CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 319 ESKILVTTRKES-VAFMM----GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 319 gs~iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
+-.||.||.... +-..+ .-...+.+...+.++-.++|..+...... ....+ ...+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCC
Confidence 445666665543 11111 12457889988999999999877643221 11112 246777777643
No 215
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.72 E-value=0.013 Score=60.91 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=99.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHH-HHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEF-RIARA 260 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~-~~~~~ 260 (973)
..++|-.++..++-+++-...- .+...-|.|+|+.|.|||+|.-.+..+ .+.| +..+-|........+ -.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 4588999998888888865432 234556889999999999999888775 2233 344455555544332 24555
Q ss_pred HHHHhcCC----CCCCCcHHHHHHHHHHHhc------CCcEEEEEecCCCCCccChhh-HHhhhc----CCCCCcEEEEE
Q 002071 261 IVEALDVS----SSGLGEFQSLLKTISKSIT------GKRFFLVLDDVWDGDYMKWEP-FYHCLK----NGLPESKILVT 325 (973)
Q Consensus 261 i~~~l~~~----~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdvw~~~~~~w~~-l~~~l~----~~~~gs~iivT 325 (973)
|.+|+... .....+..+...++...|+ +-++++|+|.++-...-.-.. +...|. ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 66555432 2222333444444544443 336888888875432222222 222222 13455667799
Q ss_pred cCChHHH---HH----hCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 326 TRKESVA---FM----MGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 326 tr~~~v~---~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
||-.... +. .....++-++.++-++...+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9964322 22 2333366677777777777777654
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.68 E-value=0.0038 Score=67.55 Aligned_cols=102 Identities=15% Similarity=0.241 Sum_probs=56.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
.-+.++|.+|+|||+||..+++.. ...-..++|+++.+ ++..+...-. .. ..+... .+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~------l~~~l~~~~~-~~--~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE------LIEILREIRF-NN--DKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH------HHHHHHHHHh-cc--chhHHH---HH-HHhc-cC
Confidence 569999999999999999999842 22233566666543 2332222111 10 111111 11 2222 22
Q ss_pred EEEEEecCCCCCccChh--hHHhhhcCC-CCCcEEEEEcCC
Q 002071 291 FFLVLDDVWDGDYMKWE--PFYHCLKNG-LPESKILVTTRK 328 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~--~l~~~l~~~-~~gs~iivTtr~ 328 (973)
=||||||+..+....|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999665444453 344444322 234568888874
No 217
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.67 E-value=0.0083 Score=59.27 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=28.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEE
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWV 246 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 246 (973)
...+|.++|++|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 445556555555
No 218
>PRK04132 replication factor C small subunit; Provisional
Probab=96.64 E-value=0.045 Score=66.19 Aligned_cols=152 Identities=11% Similarity=-0.034 Sum_probs=96.6
Q ss_pred CCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEe
Q 002071 218 MGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLD 296 (973)
Q Consensus 218 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 296 (973)
+.++||||+|..++++. ..+.+ ..++-+++|+..... ..+++++.+....+- -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999998841 12223 245667777654444 333333332211000 01245799999
Q ss_pred cCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHH
Q 002071 297 DVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKI 374 (973)
Q Consensus 297 dvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 374 (973)
+++..+..+.+.++..+..-...+++|++|.+. .+...+ .-+..+++.+++.++-.+.+...+...+-..+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 999888778888888887655566777666554 333222 33678999999999998888776543221111 345
Q ss_pred HHHHHHhcCCchHHH
Q 002071 375 GRKIAGKCRGLPLTT 389 (973)
Q Consensus 375 ~~~i~~~c~GlPLai 389 (973)
...|++.++|.+-.+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 688999999988543
No 219
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.0031 Score=65.85 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=49.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
+..-+.++|.+|+|||.||.++.+. ....--.+.++++. ++.+++...... +.....|.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDE--------GRLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHh-h
Confidence 3456899999999999999999995 33333355666544 344444444332 11122222222 2
Q ss_pred CcEEEEEecCCCCCccChh
Q 002071 289 KRFFLVLDDVWDGDYMKWE 307 (973)
Q Consensus 289 kr~LlVlDdvw~~~~~~w~ 307 (973)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999776666664
No 220
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.59 E-value=0.0049 Score=55.03 Aligned_cols=21 Identities=43% Similarity=0.573 Sum_probs=18.7
Q ss_pred EEEEeCCCChHHHHHHHHhcc
Q 002071 213 ISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (973)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998774
No 221
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.58 E-value=0.011 Score=61.10 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (973)
+.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35679999999999999999998764 22334678999887 5555443
No 222
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.58 E-value=0.0023 Score=68.82 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=42.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+++|.++.++++++++...........+++.++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999997654322345689999999999999999999874
No 223
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.56 E-value=0.088 Score=57.73 Aligned_cols=212 Identities=13% Similarity=0.091 Sum_probs=124.7
Q ss_pred chhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHH-HHHhcchhhhccCceEEEEEeCcc---ccHHHHHHHHHH
Q 002071 188 RVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALA-QLACNNDEVNRKFDKILWVCVSEA---FEEFRIARAIVE 263 (973)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~ 263 (973)
|.+..+++-.||.... -..|.|.|+-|.||+.|+ .++..+.+ .+..+.+.+- .+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997553 469999999999999999 77766421 2555554322 223334444444
Q ss_pred HhcC-----------------------CCCCC-CcHH-HHHHH-------HHH-------------------Hhc---CC
Q 002071 264 ALDV-----------------------SSSGL-GEFQ-SLLKT-------ISK-------------------SIT---GK 289 (973)
Q Consensus 264 ~l~~-----------------------~~~~~-~~~~-~~~~~-------l~~-------------------~l~---~k 289 (973)
++|- ...+. .+.+ ++.+. |++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 4431 11111 1111 11111 111 111 23
Q ss_pred cEEEEEecCCCCCc---cChhhHHhh--hcCCCCCcEEEEEcCChHHHHH----hCC--CCeeeCCCCCHHHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGDY---MKWEPFYHC--LKNGLPESKILVTTRKESVAFM----MGS--TDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 290 r~LlVlDdvw~~~~---~~w~~l~~~--l~~~~~gs~iivTtr~~~v~~~----~~~--~~~~~l~~L~~~~~~~lf~~~ 358 (973)
|-+||+|+.-.... .-|+.+..- .--..+=.+||++|-+....+. +.. ...+.|...+.+.|..+...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 67999999954321 112222111 0112345689999988765554 322 357789999999999999988
Q ss_pred hccCCCc------------cc----chhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHH-HHHHHHhh
Q 002071 359 AFFGRPI------------EE----CVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEE-EWQRILSS 411 (973)
Q Consensus 359 ~~~~~~~------------~~----~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~-~w~~~~~~ 411 (973)
....... .. .....+-....++..||--.-+..+++.++...+++ .-..+..+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7543111 00 012334456678899999999999999998876553 33444443
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.56 E-value=0.072 Score=61.14 Aligned_cols=139 Identities=22% Similarity=0.151 Sum_probs=88.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh---hh---ccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE---VN---RKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~---~~F~~~~wv~~s~~~~~~~ 256 (973)
..+-+|+.+..+|...+-..-.. +.....+.|.|.+|.|||..+..|.+.-. .+ ..|++ +.|+.-.-..+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 45778999999999888765432 34456999999999999999999987421 11 23432 3444444556889
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-----CCcEEEEEecCCCCCccChhhHHhhhcC-CCCCcEEEEEc
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSIT-----GKRFFLVLDDVWDGDYMKWEPFYHCLKN-GLPESKILVTT 326 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdvw~~~~~~w~~l~~~l~~-~~~gs~iivTt 326 (973)
++..|..++.+.... +....+.|..+.. .+..++++|+++.--.-.-+.+...|.+ ..++||++|-+
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999999875422 2333344444442 4568888888743211112334444543 45788877654
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.56 E-value=0.0084 Score=74.12 Aligned_cols=138 Identities=14% Similarity=0.235 Sum_probs=78.4
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|-+..++.+.+.+..... ..+....++.++|+.|+|||+||+.+.+. .-+.-...+-+..++-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 4689999999999887753211 11223456778999999999999998762 211112334444444322221111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc-EEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcC
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSITGKR-FFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTR 327 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr 327 (973)
.++ .+++....++ ...+.+.++.++ -+++||++.......++.+...+..|. ..+-+|+||.
T Consensus 587 ----l~g-~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 587 ----LIG-SPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred ----hcC-CCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 122 1111111111 112334444444 588999999888888888888776542 3455667766
Q ss_pred C
Q 002071 328 K 328 (973)
Q Consensus 328 ~ 328 (973)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 226
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.00051 Score=68.65 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-------ccccCCCCCcEEEecCCC
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-------TNVKRLVHLRYLNLSHQS 637 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-------~~i~~L~~L~~L~Ls~~~ 637 (973)
..+..+..++++||.+.... ..++...+.+-++|++.+++..+. +....++| +.+-+|++|+..+||.|.
T Consensus 27 ~~~d~~~evdLSGNtigtEA--~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEA--MEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HhhcceeEEeccCCcccHHH--HHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34678888999998863221 234555577889999999997432 22233333 455689999999999998
Q ss_pred cc-c----cchhhhccccccEEecCCCCCCcc
Q 002071 638 IE-K----LPETLCELYNLQKLDVSDCYGLKE 664 (973)
Q Consensus 638 i~-~----Lp~~i~~L~~Lq~L~L~~~~~~~~ 664 (973)
+. . |.+.|++-..|.+|.+++|. +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 65 3 33567888999999999987 543
No 227
>PTZ00494 tuzin-like protein; Provisional
Probab=96.55 E-value=0.38 Score=52.58 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=106.8
Q ss_pred cccCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHH
Q 002071 178 SFIDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 178 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (973)
....+..+|.|+.+-..+.+.|...+ ...++++++.|.-|.||++|.+.....+. -..++|.+... ++-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cch
Confidence 33455678999988888777776554 35789999999999999999998866332 24567777654 456
Q ss_pred HHHHHHHhcCCCCCC-Cc----HHHHHHHHHHHhcCCcEEEEEecCCCCCcc-ChhhHHhhhcCCCCCcEEEEEcCChHH
Q 002071 258 ARAIVEALDVSSSGL-GE----FQSLLKTISKSITGKRFFLVLDDVWDGDYM-KWEPFYHCLKNGLPESKILVTTRKESV 331 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~-~~----~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-~w~~l~~~l~~~~~gs~iivTtr~~~v 331 (973)
++.|++.++.++.+. .+ +.+...+-+....++.-+||+-=-...+.. .+.+. ..|.....-++|++---.+..
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhh
Confidence 788999999875432 12 122222223345677777776533221111 11111 123344456778776555443
Q ss_pred HHHh---CCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 332 AFMM---GSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 332 ~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
.-.. .--+.|.+..++.++|.++-++..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 3221 224588999999999999887654
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.013 Score=64.58 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=85.1
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhc-------------------cCceEE
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNR-------------------KFDKIL 244 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 244 (973)
.++|-+....++..+..... ...+.+-++|++|+||||+|..+.+.-.-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677777888888876432 2344699999999999999998877411000 112344
Q ss_pred EEEeCcccc---HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcE
Q 002071 245 WVCVSEAFE---EFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESK 321 (973)
Q Consensus 245 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ 321 (973)
.+..+.... ..+..+++.+....... .++.-++++|+++..+.++-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 22333333333221110 36678999999988766666667777666667788
Q ss_pred EEEEcCCh-HHHHHh-CCCCeeeCCCC
Q 002071 322 ILVTTRKE-SVAFMM-GSTDIIPVQEL 346 (973)
Q Consensus 322 iivTtr~~-~v~~~~-~~~~~~~l~~L 346 (973)
+|++|... .+...+ ..+..+++.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCc
Confidence 88888733 222222 22456667663
No 229
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.51 E-value=0.015 Score=60.58 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHH----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQ---- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 276 (973)
-..++|+|.+|+|||||++.+++. ++.+| +.++++-+.+.. +..++.+++...-... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999984 44456 556667676554 4455555554431111 11111111
Q ss_pred -HHHHHHHHHh--c-CCcEEEEEecCC
Q 002071 277 -SLLKTISKSI--T-GKRFFLVLDDVW 299 (973)
Q Consensus 277 -~~~~~l~~~l--~-~kr~LlVlDdvw 299 (973)
...-.+.+++ + ++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122345555 3 899999999983
No 230
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.51 E-value=0.016 Score=67.70 Aligned_cols=45 Identities=31% Similarity=0.383 Sum_probs=36.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+++|.+..++.+...+... ...-|.|+|.+|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999998877543 2345678999999999999999763
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.47 E-value=0.0011 Score=62.75 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=48.9
Q ss_pred EEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEE
Q 002071 213 ISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFF 292 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 292 (973)
|.++|.+|+|||+||+.++.- .. ....-+.++...+..++....--. ..........+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~---~~~~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS---NGQFEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET----TTTTCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec---ccccccccccccccc-----cceeE
Confidence 679999999999999999873 21 133446777777777654322111 000000000000000 17899
Q ss_pred EEEecCCCCCccChhhHHhhhc
Q 002071 293 LVLDDVWDGDYMKWEPFYHCLK 314 (973)
Q Consensus 293 lVlDdvw~~~~~~w~~l~~~l~ 314 (973)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999998665555555555553
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.027 Score=61.17 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-HHHHh-CCCCeeeCCCCCHHHHHHHHHHH
Q 002071 288 GKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-VAFMM-GSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
+++-++|+|++...+...-+.+...+.....++.+|++|.+.. +...+ .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4555667788887776666777777765445566777776643 43332 23568899999999999888654
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.43 E-value=0.01 Score=59.05 Aligned_cols=131 Identities=22% Similarity=0.243 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc----c-----cHH--
Q 002071 187 GRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA----F-----EEF-- 255 (973)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~----~-----~~~-- 255 (973)
.+..+....++.|. ...++.+.|++|.|||.||....-+.-..+.|+.++++.-.-+ . +..
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45566777777776 2358999999999999999888776555678888888742111 0 000
Q ss_pred --HHHHHHHHHhcCCCCCCCcHHHHHHH------HHHHhcCC---cEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEE
Q 002071 256 --RIARAIVEALDVSSSGLGEFQSLLKT------ISKSITGK---RFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILV 324 (973)
Q Consensus 256 --~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iiv 324 (973)
-...-+...+..-. .....+.+.+. -..+++|+ ..+||+|++.+.+... +...+-..+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcccCCCcEEEE
Confidence 01111222221110 11122222210 01245555 3599999997765444 4444555668899999
Q ss_pred EcCCh
Q 002071 325 TTRKE 329 (973)
Q Consensus 325 Ttr~~ 329 (973)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 96543
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.42 E-value=0.011 Score=60.84 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=32.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE 253 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (973)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5689999999999999999998763 223334678887765554
No 235
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.044 Score=60.44 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=87.4
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
..++..+.+.|++|+|||+||..++. ...|..+--++..+-. +.+ +......+........
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi-------------G~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI-------------GLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc-------------Ccc--HHHHHHHHHHHHHHhh
Confidence 44677888999999999999999975 5678765444321111 110 1111222333344455
Q ss_pred cCCcEEEEEecCCCCCccChh------------hHHhhhcCCC-CCcE--EEEEcCChHHHHHhCC----CCeeeCCCCC
Q 002071 287 TGKRFFLVLDDVWDGDYMKWE------------PFYHCLKNGL-PESK--ILVTTRKESVAFMMGS----TDIIPVQELA 347 (973)
Q Consensus 287 ~~kr~LlVlDdvw~~~~~~w~------------~l~~~l~~~~-~gs~--iivTtr~~~v~~~~~~----~~~~~l~~L~ 347 (973)
+..--.||+||+..- .+|- .+...|.... .|-| |+-||....|.+.|+. ...|.+.-++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 677789999999442 2332 2333333322 3334 4556666778777765 4578888888
Q ss_pred H-HHHHHHHHHHh-ccCCCcccchhHHHHHHHHHHhc
Q 002071 348 E-EECWLLFNRIA-FFGRPIEECVKLEKIGRKIAGKC 382 (973)
Q Consensus 348 ~-~~~~~lf~~~~-~~~~~~~~~~~~~~~~~~i~~~c 382 (973)
. ++..+.++..- |. +.....++.+...+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 77777777643 22 223455566666666
No 236
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.40 E-value=0.0024 Score=58.63 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
||.|+|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 237
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.018 Score=65.31 Aligned_cols=189 Identities=16% Similarity=0.198 Sum_probs=113.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
++++|-+.-...+...+... .-.+---..|.-|+||||+|+-++.---... | ...+++..=...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 45799999999998888643 2345566789999999999998865211110 0 1122222222223332
Q ss_pred HH--hc------CCCCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHH
Q 002071 263 EA--LD------VSSSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVA 332 (973)
Q Consensus 263 ~~--l~------~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~ 332 (973)
.. ++ .+..+..+..++.+.+.-. .+++-=+.++|.|+..+...|..+...+..-....+.|+.|++. .+-
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 22 00 0111222233332222221 14566688999999888888888888876655666666666654 443
Q ss_pred -HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 333 -FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 333 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
....-+..|.++.++.++-...+...+-..+-..+ .+....|++...|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 33455779999999999988888877654433222 4445667777777553
No 238
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00035 Score=70.05 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=59.6
Q ss_pred cccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCc--cccCCCC
Q 002071 597 LTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQ--GIGKLVN 674 (973)
Q Consensus 597 l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~--~i~~L~~ 674 (973)
+.+.+.|++.+ +.+.++ .-+.+++.|+.|.||-|.|+.|- .+..+++|+.|.|+.|. +..+-+ .+.++++
T Consensus 18 l~~vkKLNcwg-----~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWG-----CGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccC-----CCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCch
Confidence 44556667766 333333 23456777777777777777664 36677777777777775 554432 3556777
Q ss_pred cceeecCCCCCCCccccc-----CCCccccccCC
Q 002071 675 MKHLLDDKTDSLGHMPVG-----IGRLTSLRTLV 703 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~ 703 (973)
|+.|-|..|+.....+.. +.-|++|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777766544443322 34456666665
No 239
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.34 E-value=0.017 Score=60.23 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhcc----CceEEEEEeCccccHHHHHHHHHHHhcCCCC------------C
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRK----FDKILWVCVSEAFEEFRIARAIVEALDVSSS------------G 271 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~ 271 (973)
+.-.++.|+|.+|+|||+||.+++-....... -..++|++....++...+. ++++..+.... .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 35689999999999999999998743222221 3689999988877765443 33444332110 1
Q ss_pred CCcHHHHHHHHHHHhc-C-CcEEEEEecCC
Q 002071 272 LGEFQSLLKTISKSIT-G-KRFFLVLDDVW 299 (973)
Q Consensus 272 ~~~~~~~~~~l~~~l~-~-kr~LlVlDdvw 299 (973)
..+..+....+.+.+. . +--+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1122223334444442 3 56678888773
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.023 Score=58.75 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=54.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccC------ceEEEEEeCccccHHHHHHHHHHHhcCCC---------CCC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKF------DKILWVCVSEAFEEFRIARAIVEALDVSS---------SGL 272 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~ 272 (973)
+.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. .+++...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 356799999999999999999887532 1222 567899988777765543 3333322110 011
Q ss_pred CcHHHHHHHHHHHhc----CCcEEEEEecCC
Q 002071 273 GEFQSLLKTISKSIT----GKRFFLVLDDVW 299 (973)
Q Consensus 273 ~~~~~~~~~l~~~l~----~kr~LlVlDdvw 299 (973)
.+.+++...+.+..+ .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 234444444444332 344588888874
No 241
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.32 E-value=0.1 Score=57.41 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=93.1
Q ss_pred hHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh--ccC---ceEEEEEeCccccHHHHHHHHHHH
Q 002071 190 SEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN--RKF---DKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 190 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+.-+-. ..+ ..-+|-.-....-...++..|..+
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 34566667776542 2468899999999999999999987742222 011 223344333333344455555544
Q ss_pred hcCCCCC------------------------------------------------------------------CCcHHHH
Q 002071 265 LDVSSSG------------------------------------------------------------------LGEFQSL 278 (973)
Q Consensus 265 l~~~~~~------------------------------------------------------------------~~~~~~~ 278 (973)
+...... ..+.++.
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (325)
T PF07693_consen 80 LEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEEL 159 (325)
T ss_pred HHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHH
Confidence 4321000 0011112
Q ss_pred HHHHHHHh--cCCcEEEEEecCCCCCccChhhHHhhhcC--CCCCcEEEEEcCChHHHHHhCC-----------------
Q 002071 279 LKTISKSI--TGKRFFLVLDDVWDGDYMKWEPFYHCLKN--GLPESKILVTTRKESVAFMMGS----------------- 337 (973)
Q Consensus 279 ~~~l~~~l--~~kr~LlVlDdvw~~~~~~w~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~----------------- 337 (973)
...+.+.+ .++|.++|+||++.-+.+.-..+...+.. ..++..+|+..-.+.++..+..
T Consensus 160 ~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 160 ISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred HHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh
Confidence 33344444 36899999999988655544444444432 2377788888776666654322
Q ss_pred --CCeeeCCCCCHHHHHHHHHHH
Q 002071 338 --TDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 338 --~~~~~l~~L~~~~~~~lf~~~ 358 (973)
..++.+++.+..+-..+|...
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHH
Confidence 124566666666655555544
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.042 Score=59.76 Aligned_cols=89 Identities=10% Similarity=0.190 Sum_probs=48.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE--EFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
..++|+++|.+|+||||++..++.. ....=..+..++.. .+. ..+-++.-++.++.+-....+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4589999999999999999999763 22221234445443 332 222333333444433222234445554444432
Q ss_pred cC-CcEEEEEecCCC
Q 002071 287 TG-KRFFLVLDDVWD 300 (973)
Q Consensus 287 ~~-kr~LlVlDdvw~ 300 (973)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234677787644
No 243
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.31 E-value=0.0099 Score=57.78 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=67.4
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
++|....+.++++.+..... ....|.|+|..|.||+.+|+.+++.... .-...+-|+++.- +.+.+-.++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh-hcchhhhhhhcc
Confidence 46788888888887755432 2245679999999999999999874211 1122334444432 333332222222
Q ss_pred hcCCCCCC--CcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC------C-----CCcEEEEEcCC
Q 002071 265 LDVSSSGL--GEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG------L-----PESKILVTTRK 328 (973)
Q Consensus 265 l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~------~-----~gs~iivTtr~ 328 (973)
......+. .... .+.. -..=-|+||++.......-..+...+..+ . ...|||.||..
T Consensus 74 ~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 11111111 1111 1111 23346789999877655556666666532 1 24688888874
No 244
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.27 E-value=0.012 Score=55.81 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999875
No 245
>PRK13695 putative NTPase; Provisional
Probab=96.25 E-value=0.0083 Score=59.14 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 246
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.22 E-value=0.035 Score=52.83 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC---ccccHHHHHHHHHHHhc-----CCC-CCCCcH------
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS---EAFEEFRIARAIVEALD-----VSS-SGLGEF------ 275 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~~~~~~~~~~i~~~l~-----~~~-~~~~~~------ 275 (973)
..|-|++-.|.||||+|....- +..++=..+.+|-+- .......+++.+- .+. ... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 3677888889999999977765 333332334443322 2334443433330 010 000 000111
Q ss_pred -HHHHHHHHHHhc-CCcEEEEEecCCCC---CccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 276 -QSLLKTISKSIT-GKRFFLVLDDVWDG---DYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 276 -~~~~~~l~~~l~-~kr~LlVlDdvw~~---~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
....+..++.+. ++-=|+|||++-.. .....+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112223334443 44569999998432 23455778888877777889999999854
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.19 E-value=0.015 Score=66.49 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=61.3
Q ss_pred CCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 002071 206 HQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS 285 (973)
Q Consensus 206 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (973)
+.+..++.-++|++|+||||||.-+++..- | .++=+++|+.-+...+-..|...+.... .
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~ 381 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS---------------V 381 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc---------------c
Confidence 466789999999999999999999887422 2 4667788887777666655555443221 2
Q ss_pred h--cCCcEEEEEecCCCCCccChhhHHhhhc
Q 002071 286 I--TGKRFFLVLDDVWDGDYMKWEPFYHCLK 314 (973)
Q Consensus 286 l--~~kr~LlVlDdvw~~~~~~w~~l~~~l~ 314 (973)
+ .++...||+|.++.......+.+...+.
T Consensus 382 l~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred cccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2 2567889999998765444455555554
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.14 E-value=0.022 Score=68.75 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=70.9
Q ss_pred ceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
.++|-+..++.+.+.+..... ........+.++|++|+|||++|+.+... .. ...+.+++++..+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc----
Confidence 478999998888888763210 01223567899999999999999999763 22 2334455544322111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHhc-CCcEEEEEecCCCCCccChhhHHhhhcCC
Q 002071 261 IVEALDVSSSGLGEFQSLLKTISKSIT-GKRFFLVLDDVWDGDYMKWEPFYHCLKNG 316 (973)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~w~~l~~~l~~~ 316 (973)
+ ..+.+.+++....+ ....+.+.++ ...-+|+||++.....+.++.+...+..+
T Consensus 530 ~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 V-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred H-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1 22222221111100 0112223333 33469999999988877788888777544
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.13 E-value=0.029 Score=56.14 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVS 268 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 268 (973)
++||.++|+.|+||||.+-+++.... ..-..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 37999999999999998877776433 2234566666542 234556677777777754
No 250
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.11 E-value=0.05 Score=53.90 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=65.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE---eCccccHHHH------HHHHHHHhcCCC-----CC-CCc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC---VSEAFEEFRI------ARAIVEALDVSS-----SG-LGE 274 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~-----~~-~~~ 274 (973)
-.+++|+|..|.|||||++.++.. .....+.+++. +.. .+.... ..++++.++... .. ...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 358999999999999999999863 22334444442 211 111111 112445544321 11 122
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CC-CcEEEEEcCChHHH
Q 002071 275 FQSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LP-ESKILVTTRKESVA 332 (973)
Q Consensus 275 ~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~-gs~iivTtr~~~v~ 332 (973)
-+...-.+.+.+-..+-++++|+.-.. +....+.+...+..- .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222223355566667788999987432 223344455555432 22 66788888876654
No 251
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.09 E-value=0.0045 Score=58.31 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=62.1
Q ss_pred ecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh-hccCceEEEEEeCccccHHHHHHHHHHH
Q 002071 186 CGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV-NRKFDKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
||.-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-------------
Confidence 466666777766665432 13456899999999999999988774221 1122110 00000
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC-CCCcEEEEEcCCh
Q 002071 265 LDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG-LPESKILVTTRKE 329 (973)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~-~~gs~iivTtr~~ 329 (973)
. .+.+.+ .+.--|+|+|+..-+......+...+... ....|+|.||+..
T Consensus 61 ---------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 ---------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0 111111 14445789999877666666777777643 5678999998743
No 252
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.031 Score=61.57 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...++.++|.+|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 253
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.08 E-value=0.048 Score=51.70 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=58.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
-.+++|+|..|.|||||++.+.... ....+.+|+.-.. .+..-.. ...-+...-.+...+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhcC
Confidence 3589999999999999999997632 2223444432100 0000000 111222223345556666
Q ss_pred cEEEEEecCCC-CCccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 290 RFFLVLDDVWD-GDYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 290 r~LlVlDdvw~-~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
.-++++|+.-. -+......+...+..- +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 77889998743 2333444555555543 246888887766553
No 254
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.07 E-value=0.033 Score=55.35 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=72.8
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
-..++|-+..++.+++--..-.. ...---|-++|.-|.||+.|++++.+ .+....-.. |.|.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k~---------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDKE---------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcHH----------
Confidence 34689999888888774332111 12334678999999999999999988 454444332 222221
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC---CCCcEEEEEcCCh
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG---LPESKILVTTRKE 329 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~---~~gs~iivTtr~~ 329 (973)
+...+..+.+.|+. ..+||+|..||..-+ ....+..+.+.+..+ .+.-.++..|.++
T Consensus 123 ---------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ---------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ---------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222333333322 378999999999543 334667777777654 2444555555543
No 255
>PRK06696 uridine kinase; Validated
Probab=96.07 E-value=0.0068 Score=62.41 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=34.7
Q ss_pred chhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 188 RVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
|++.+++|.+.+.... .+...+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5677788888886532 34678999999999999999999987
No 256
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.05 E-value=0.0096 Score=59.76 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh---
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI--- 286 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 286 (973)
-+++.|.|.+|.||||+++.+... .... ...+.+..........+.+. .+.. ...+.. .+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti~~---~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGIE---AQTIHS---FLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS----EEEHHH---HTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCcc---hhhHHH---HHhcCCccc
Confidence 357889999999999999998763 2222 23444444443333333333 2211 001110 000000
Q ss_pred ------cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 287 ------TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 287 ------~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
..++-+||+|++...+...+..+....+. .|+++|+.--..
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999987665555555555544 577888876443
No 257
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.039 Score=54.17 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=61.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc--ccHHHHHHHHHHHhcC--CCCCC---------CcHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA--FEEFRIARAIVEALDV--SSSGL---------GEFQ 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~--~~~~~---------~~~~ 276 (973)
-.+++|+|..|.|||||.+.++.- .....+.+++.-... ...... .+.++. +.... -+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 458999999999999999999763 122334343321110 011111 111111 00000 1111
Q ss_pred H-HHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHHH
Q 002071 277 S-LLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAFM 334 (973)
Q Consensus 277 ~-~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~ 334 (973)
+ ..-.+...+-.+.-++++|+-... +......+...+..-..+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 122345556667779999987542 222334455555433345678888888766543
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.03 E-value=0.038 Score=67.73 Aligned_cols=179 Identities=15% Similarity=0.074 Sum_probs=91.1
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
+++.|.+..++++.+.+...-. -+-...+-|.++|.+|.||||||+.+++. ....| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH-----
Confidence 4588999999888877642110 01123456889999999999999999873 22222 2222111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc-----------ChhhHHhhhcCC-CCCcEEE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM-----------KWEPFYHCLKNG-LPESKIL 323 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-----------~w~~l~~~l~~~-~~gs~ii 323 (973)
+ .... . ......+...+.........+|+||++...... ....+...+... ..+..++
T Consensus 248 -i----~~~~----~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -I----MSKY----Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -H----hccc----c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 0000 0 011122222333333456789999998542100 112233333221 2233444
Q ss_pred E-EcCChH-HHHHhC----CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 324 V-TTRKES-VAFMMG----STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 324 v-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
+ ||.... +...+. -...+.+...+.++..+++....-.. ...... ....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcccc----CHHHHHHhCCCCC
Confidence 4 444322 111111 13467788888888888888654221 111111 1355777777754
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.99 E-value=0.036 Score=54.27 Aligned_cols=122 Identities=11% Similarity=0.149 Sum_probs=65.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcch---hhhcc---Cc--eEEEEEeCccccHHHHHHHHHHHhcCCCC------CCCcH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNND---EVNRK---FD--KILWVCVSEAFEEFRIARAIVEALDVSSS------GLGEF 275 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~ 275 (973)
-.+++|+|..|+|||||.+.+..+. .+... |. .+.|+ .+ .+.++.++.... ...+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999885321 11111 10 12332 22 345566654321 11122
Q ss_pred H-HHHHHHHHHhcCC--cEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHHHhCCCCeeeC
Q 002071 276 Q-SLLKTISKSITGK--RFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAFMMGSTDIIPV 343 (973)
Q Consensus 276 ~-~~~~~l~~~l~~k--r~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 343 (973)
. ...-.+...+-.+ .-++++|..-.. +....+.+...+... ..|..||++|.+...... +..++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 2222344555555 667888887432 223334455554432 246778888888776542 3444444
No 260
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.97 E-value=0.026 Score=60.56 Aligned_cols=85 Identities=22% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS-----SGLGEFQSLLKTI 282 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 282 (973)
+.-+++-|+|.+|+||||||.++... ....-..++|++..+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999888763 33334567899887766653 344444321 1112344555555
Q ss_pred HHHhc-CCcEEEEEecCC
Q 002071 283 SKSIT-GKRFFLVLDDVW 299 (973)
Q Consensus 283 ~~~l~-~kr~LlVlDdvw 299 (973)
....+ +.--+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 556789999984
No 261
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.062 Score=55.73 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcch--hhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNND--EVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
-++|-++|++|.|||+|.+..+..- |..+.|....-+.++...-..+.+ . ....-+..+.++|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF--------s--ESgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF--------S--ESGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH--------h--hhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999998863 334455444445444322121111 1 112334556666777776
Q ss_pred CCc--EEEEEecCC
Q 002071 288 GKR--FFLVLDDVW 299 (973)
Q Consensus 288 ~kr--~LlVlDdvw 299 (973)
++. +++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 443 455688883
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.93 E-value=0.034 Score=59.28 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=46.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
..+++.++|.+|+||||++..++.....+..-..+..|+..... ...+.+..-.+.++.+.....+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999887643222111245555544311 122233333333443322223334444444433 3
Q ss_pred CCcEEEEEecC
Q 002071 288 GKRFFLVLDDV 298 (973)
Q Consensus 288 ~kr~LlVlDdv 298 (973)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 263
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.91 E-value=0.079 Score=53.42 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCC------C-CCCcHHHHHHHHHHHhcCCcEEEEEecCCC-CCccChhhHHhhhcCC--CCCcEEEE
Q 002071 255 FRIARAIVEALDVSS------S-GLGEFQSLLKTISKSITGKRFFLVLDDVWD-GDYMKWEPFYHCLKNG--LPESKILV 324 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~------~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~w~~l~~~l~~~--~~gs~iiv 324 (973)
.+....+++.++... + ..+.-++..-.+.+.|-..+-+|+-|.--. -+...-+.+...+... ..|..||+
T Consensus 119 ~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 334455566655531 2 223334444567788888888888887522 2222334555566543 35789999
Q ss_pred EcCChHHHHHhC
Q 002071 325 TTRKESVAFMMG 336 (973)
Q Consensus 325 Ttr~~~v~~~~~ 336 (973)
.|-+..+|..+.
T Consensus 199 VTHd~~lA~~~d 210 (226)
T COG1136 199 VTHDPELAKYAD 210 (226)
T ss_pred EcCCHHHHHhCC
Confidence 999999998643
No 264
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.91 E-value=0.036 Score=56.80 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=74.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-----cccHHHHHHHHHHHhcCCC------CCCCcHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-----AFEEFRIARAIVEALDVSS------SGLGEFQSL 278 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~~ 278 (973)
-.+++|||..|.||||+++.+.. ....-.+.++..-.+ .....+-..++++.++... +..-+-++.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999986 222223333333211 2233345566666666542 222233333
Q ss_pred H-HHHHHHhcCCcEEEEEecCCCCCc-cChhhHHhhhcC--CCCCcEEEEEcCChHHHHHhCC
Q 002071 279 L-KTISKSITGKRFFLVLDDVWDGDY-MKWEPFYHCLKN--GLPESKILVTTRKESVAFMMGS 337 (973)
Q Consensus 279 ~-~~l~~~l~~kr~LlVlDdvw~~~~-~~w~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 337 (973)
+ -.+.+.|.-+.-++|.|..-+.-. ..-..+...+.+ ...|-..+..|-+-.|+..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3 346778888999999998744321 112334444433 2356678888888887776543
No 265
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.90 E-value=0.021 Score=55.47 Aligned_cols=149 Identities=13% Similarity=0.215 Sum_probs=75.9
Q ss_pred EEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc--CCc
Q 002071 213 ISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT--GKR 290 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr 290 (973)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ ..+.|.+.-...+...... +....+.+.+. .+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCC
Confidence 679999999999999998652 23467778777777653 4444444322222222111 11222333331 123
Q ss_pred EEEEEecC--CCC-----Ccc--------ChhhHHhhhcCCCCCcEEEEEcCChHHHHHhCCCCeeeCCCCCHHHHHHHH
Q 002071 291 FFLVLDDV--WDG-----DYM--------KWEPFYHCLKNGLPESKILVTTRKESVAFMMGSTDIIPVQELAEEECWLLF 355 (973)
Q Consensus 291 ~LlVlDdv--w~~-----~~~--------~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf 355 (973)
-.+++|.+ |-. ... .+..+...+. ..+..+|++|. +|. ....+.+..-..|
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsn--EvG----------~g~vp~~~~~r~f 140 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSN--EVG----------LGVVPENALGRRF 140 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEEC--CcC----------CCCCCCCHHHHHH
Confidence 37999987 211 000 1111222222 24555666664 221 3344555556666
Q ss_pred HHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 356 NRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
....+ ...+.+...+.++.....|+|+
T Consensus 141 ~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 141 RDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 66553 2233444445555555577775
No 266
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.90 E-value=0.099 Score=50.22 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=73.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe---------------------C-------------------
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV---------------------S------------------- 249 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---------------------s------------------- 249 (973)
-..+.|+|..|.|||||.+.+|...+. =.+.+|+.- =
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 468999999999999999999874321 123333320 0
Q ss_pred -----ccccHHHHHHHHHHHhcCCC------CCCCcHHHHHHHHHHHhcCCcEEEEEecCCC-CC-ccChhhHHhhhcCC
Q 002071 250 -----EAFEEFRIARAIVEALDVSS------SGLGEFQSLLKTISKSITGKRFFLVLDDVWD-GD-YMKWEPFYHCLKNG 316 (973)
Q Consensus 250 -----~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~-~~~w~~l~~~l~~~ 316 (973)
++....+-..+.++..+... ...+.-++..-.|.+.+-+++-+|+-|.--. -+ ..+|+.+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 01122222333333334321 2223334444557777778888888886421 11 13565544433446
Q ss_pred CCCcEEEEEcCChHHHHHhC
Q 002071 317 LPESKILVTTRKESVAFMMG 336 (973)
Q Consensus 317 ~~gs~iivTtr~~~v~~~~~ 336 (973)
..|+.|+++|-+...-+.+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 78999999999998776653
No 267
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.90 E-value=0.029 Score=60.13 Aligned_cols=85 Identities=22% Similarity=0.217 Sum_probs=55.6
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS-----SGLGEFQSLLKTI 282 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 282 (973)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35679999999999999999988763 33344678899988777753 334444321 1112345555555
Q ss_pred HHHhc-CCcEEEEEecCC
Q 002071 283 SKSIT-GKRFFLVLDDVW 299 (973)
Q Consensus 283 ~~~l~-~kr~LlVlDdvw 299 (973)
...++ +.--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55443 456789999974
No 268
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.87 E-value=0.017 Score=56.26 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=74.9
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCc---HHHHHHHHHHHhcC
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGE---FQSLLKTISKSITG 288 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l~~ 288 (973)
++.|.|.+|+||||+|..+... .. ..++++.....++. +..+.|.......+..... ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999998752 11 12344544444433 4445554443322222211 11233444443433
Q ss_pred CcEEEEEecC--CCC-----Cc-cChhh----HHhhhcCCCCCcEEEEEcCChHHHHHhCCCCeeeCCCCCHHHHHHHHH
Q 002071 289 KRFFLVLDDV--WDG-----DY-MKWEP----FYHCLKNGLPESKILVTTRKESVAFMMGSTDIIPVQELAEEECWLLFN 356 (973)
Q Consensus 289 kr~LlVlDdv--w~~-----~~-~~w~~----l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (973)
.. ++|+|.+ |-. +. ..|.. +...+. ..+..+|+|+... -.+..+.++.-..|.
T Consensus 77 ~~-~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 77 GR-CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV------------GMGIVPEYRLGRHFR 141 (170)
T ss_pred CC-EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC------------cccccCCCHHHHHHH
Confidence 23 7889987 211 10 12222 222232 2455566665421 123334445555666
Q ss_pred HHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 357 RIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
...+ ...+.+...+.++.....|+|+-+
T Consensus 142 d~lG-----~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAG-----RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHH-----HHHHHHHHHCCEEEEEeCCCcEec
Confidence 5542 223344444555555557887644
No 269
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.085 Score=55.75 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=101.2
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.++=|-++.+++|.+...-+-. -+-..++=|-++|++|.|||-||++|++. ..-.| +.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 4567788888888776533211 02335677889999999999999999994 33333 333321
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-CCcEEEEEecCCCC-----------CccChhhHHhhh---cCC--CC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSIT-GKRFFLVLDDVWDG-----------DYMKWEPFYHCL---KNG--LP 318 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~-----------~~~~w~~l~~~l---~~~--~~ 318 (973)
++++..-+ +-..++..+.+.-+ .....|.+|.++.. +.+.-..+...| ... ..
T Consensus 220 ----ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 22222211 11223333333333 55788889988431 111112222332 222 24
Q ss_pred CcEEEEEcCChHHHHH--hCC---CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch----HHH
Q 002071 319 ESKILVTTRKESVAFM--MGS---TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP----LTT 389 (973)
Q Consensus 319 gs~iivTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----Lai 389 (973)
.-|||..|...++... +.. .+.+++..-+.+.-.+.|.-++-. ......-++ +.+++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 5689999887654322 222 457777744445555666655432 222333344 34666666654 345
Q ss_pred HHHHhhhc
Q 002071 390 KAIGSLMR 397 (973)
Q Consensus 390 ~~~~~~l~ 397 (973)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55555544
No 270
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.85 E-value=0.044 Score=57.45 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=54.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhcCCCC---------CCCcH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALDVSSS---------GLGEF 275 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 275 (973)
.-.+.=|+|.+|+|||.|+.+++-...... .=..++|++....|..+.+. +|++..+.... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 345899999999999999987765433222 22469999999999887765 56666543210 01122
Q ss_pred HHHH---HHHHHHh-cCCcEEEEEecC
Q 002071 276 QSLL---KTISKSI-TGKRFFLVLDDV 298 (973)
Q Consensus 276 ~~~~---~~l~~~l-~~kr~LlVlDdv 298 (973)
+++. ..+...+ +.+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3332 3333333 345568888887
No 271
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.84 E-value=0.036 Score=58.55 Aligned_cols=134 Identities=26% Similarity=0.299 Sum_probs=75.1
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch-hhhccCceEEE----EEeCccc-------
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND-EVNRKFDKILW----VCVSEAF------- 252 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~~s~~~------- 252 (973)
+-+|..+..--+++|+.+ .+..|.+.|.+|.|||.||-...-.. ..++.|..++- |.+.++.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 344666666667777643 68999999999999999986654321 12333432221 1222221
Q ss_pred --cHHHHHHHHHHHhcCC-CCCCCcHHHHHHHHH---------HHhcCC---cEEEEEecCCCCCccChhhHHhhhcCCC
Q 002071 253 --EEFRIARAIVEALDVS-SSGLGEFQSLLKTIS---------KSITGK---RFFLVLDDVWDGDYMKWEPFYHCLKNGL 317 (973)
Q Consensus 253 --~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdvw~~~~~~w~~l~~~l~~~~ 317 (973)
.+.-+.+.|..-+..- ..+....+.+...+. .+.+|+ +-++++|...+-.. ..+...+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 2233455554444321 111111112221111 233454 45899999976543 45666777778
Q ss_pred CCcEEEEEcC
Q 002071 318 PESKILVTTR 327 (973)
Q Consensus 318 ~gs~iivTtr 327 (973)
.||||+.|.-
T Consensus 377 ~GsKIVl~gd 386 (436)
T COG1875 377 EGSKIVLTGD 386 (436)
T ss_pred CCCEEEEcCC
Confidence 9999999975
No 272
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.84 E-value=0.055 Score=53.05 Aligned_cols=104 Identities=15% Similarity=0.058 Sum_probs=57.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE------eCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC------VSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTIS 283 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 283 (973)
-.+++|+|..|+|||||++.+..-. ....+.+++. +.+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 3589999999999999999987631 1222333321 111111 122222233355
Q ss_pred HHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CC-CcEEEEEcCChHHHHH
Q 002071 284 KSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LP-ESKILVTTRKESVAFM 334 (973)
Q Consensus 284 ~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 334 (973)
..+-.+.-++++|.--.. +......+...+... .. +..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 566667788899987432 222233344444332 22 3567777777655443
No 273
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.82 E-value=0.0091 Score=58.20 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=54.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhh-ccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVN-RKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
..++.+.|+.|+|||.||+.+.. .+. +.....+-+++++-.+..+.-..+-..++ .... ... . .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~-~~~~--~v~-------~---~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLG-SPPG--YVG-------A---E 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHH-HTTC--HHH-------H---H
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhh-cccc--eee-------c---c
Confidence 56889999999999999999987 333 44556666776654441111111111111 1100 000 0 0
Q ss_pred CcEEEEEecCCCCCc-----------cChhhHHhhhcC
Q 002071 289 KRFFLVLDDVWDGDY-----------MKWEPFYHCLKN 315 (973)
Q Consensus 289 kr~LlVlDdvw~~~~-----------~~w~~l~~~l~~ 315 (973)
..-+|+||++..... ..|..+...+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 112999999988877 778888877753
No 274
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.81 E-value=0.04 Score=54.48 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=61.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcC--CC------------CCCCcH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDV--SS------------SGLGEF 275 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~------------~~~~~~ 275 (973)
-.+++|+|..|.|||||++.+..-. ..-.+.+++.-. +.......+-+.++. +. ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3589999999999999999997631 112233333211 111111111111110 00 011111
Q ss_pred -HHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 276 -QSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 276 -~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22222345556667788899988542 22233444455543334677888888877654
No 275
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.80 E-value=0.034 Score=60.45 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=43.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhh----ccCceEEEEEeCccccHHHHHHHHHHHhcCC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVN----RKFDKILWVCVSEAFEEFRIARAIVEALDVS 268 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (973)
+.-+++-|+|.+|+|||+|+.+++-..... +.-..++|++....|..+.+.+ +++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 356789999999999999998886432221 1225789999999999887654 56666543
No 276
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.80 E-value=0.06 Score=58.71 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=41.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhcc----CceEEEEEeCccccHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRK----FDKILWVCVSEAFEEFRIARAIVEALD 266 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (973)
.-.++-|+|.+|+|||+++.+++-....... =..++||+..+.|+...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5679999999999999999988754222111 14799999999888876653 444444
No 277
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.058 Score=61.74 Aligned_cols=155 Identities=17% Similarity=0.041 Sum_probs=83.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc--cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF--EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
...-|-|.|..|+|||+||+++++... +.+.-++.+|+++.-. ..+.+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 456789999999999999999998543 5556667777766421 12222211 112233455
Q ss_pred cCCcEEEEEecCCC------CCccChhh----HHhhh----c-CCCCCcEE--EEEcCChHHH-HHhCC----CCeeeCC
Q 002071 287 TGKRFFLVLDDVWD------GDYMKWEP----FYHCL----K-NGLPESKI--LVTTRKESVA-FMMGS----TDIIPVQ 344 (973)
Q Consensus 287 ~~kr~LlVlDdvw~------~~~~~w~~----l~~~l----~-~~~~gs~i--ivTtr~~~v~-~~~~~----~~~~~l~ 344 (973)
.-.+-+|||||++- .+...|.. +..++ . ....+.+| |-|.....-. ..+.. ..+..+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67789999999942 11223322 21222 1 12344553 3333322111 11111 2356788
Q ss_pred CCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCc
Q 002071 345 ELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGL 385 (973)
Q Consensus 345 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 385 (973)
.+...+-.++++...-.... . ...+...-+..+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~-~---~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLS-D---ITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhh-h---hhhHHHHHHHHhcCCc
Confidence 88888887777765422111 1 1122222377778764
No 278
>PRK09354 recA recombinase A; Provisional
Probab=95.80 E-value=0.036 Score=59.96 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS-----SGLGEFQSLLKTI 282 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 282 (973)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999988763 33344678999988877753 344444321 1112344555555
Q ss_pred HHHhc-CCcEEEEEecCC
Q 002071 283 SKSIT-GKRFFLVLDDVW 299 (973)
Q Consensus 283 ~~~l~-~kr~LlVlDdvw 299 (973)
...++ ++--+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 556789999984
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.80 E-value=0.034 Score=54.05 Aligned_cols=116 Identities=12% Similarity=0.157 Sum_probs=62.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc--ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA--FEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
-.+++|+|..|.|||||.+.++.- .....+.+++.-... .+..+..+ +.++.-. ....-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 358999999999999999999763 223445555432111 11111111 1111111 12222222333555666
Q ss_pred CCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHH
Q 002071 288 GKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVA 332 (973)
Q Consensus 288 ~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~ 332 (973)
.++-++++|+.-.. +......+...+... ..|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 67788889987432 223344455555432 3467788888887643
No 280
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.78 E-value=0.0064 Score=68.85 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=39.9
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999432211233557999999999999999999987
No 281
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.75 E-value=0.049 Score=58.69 Aligned_cols=59 Identities=25% Similarity=0.373 Sum_probs=42.9
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhh----ccCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVN----RKFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
+.-+++-|+|.+|+|||+|+.+++-..... +.=..++|++....|+.+.+. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 356799999999999999998875432221 112478999999998888765 45666654
No 282
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.72 E-value=0.0056 Score=61.68 Aligned_cols=60 Identities=27% Similarity=0.265 Sum_probs=36.3
Q ss_pred CCCCCcEEEecCC--Ccc-ccchhhhccccccEEecCCCCCCcc---cCccccCCCCcceeecCCCCC
Q 002071 624 RLVHLRYLNLSHQ--SIE-KLPETLCELYNLQKLDVSDCYGLKE---LPQGIGKLVNMKHLLDDKTDS 685 (973)
Q Consensus 624 ~L~~L~~L~Ls~~--~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~---lp~~i~~L~~L~~L~l~~~~~ 685 (973)
.|++|++|.+|.| .+. .++-...++++|++|++++|+ +.. ++ .+..+.+|..|++.+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcccCCc
Confidence 4667777777777 333 455555566777777777776 332 22 244566666777766643
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.71 E-value=0.055 Score=52.47 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=29.8
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE 253 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (973)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999874 222345678887765543
No 284
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.69 E-value=0.047 Score=56.76 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC------------------
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS------------------ 269 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 269 (973)
+.-.++.|+|.+|+|||++|.++.... . ..=..++|++..+.+ .++.+.+ ++++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356799999999999999999986531 2 234578899887653 4444443 2232210
Q ss_pred --CCCCcHHHHHHHHHHHhcC-CcEEEEEecCC
Q 002071 270 --SGLGEFQSLLKTISKSITG-KRFFLVLDDVW 299 (973)
Q Consensus 270 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw 299 (973)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 55589999985
No 285
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.68 E-value=0.0042 Score=62.54 Aligned_cols=83 Identities=24% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCCCcEEEecCCCccccchhhhccccccEEecCCC--CCCcccCccccCCCCcceeecCCCCCCCccccc---CCCccc
Q 002071 624 RLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDC--YGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVG---IGRLTS 698 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~l~~ 698 (973)
.+..|++|++.++.++.+- .+-.|++|++|.++.| .....++.-..++++|++|++++|.+ .. +.. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccchhhhhcc
Confidence 4556666667666655432 2446889999999999 44455666667789999999999954 21 333 334455
Q ss_pred cccCCeeeeCC
Q 002071 699 LRTLVEFHVSG 709 (973)
Q Consensus 699 L~~L~~~~~~~ 709 (973)
|.+|+++.+..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 55666655543
No 286
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.66 E-value=0.064 Score=63.26 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=75.2
Q ss_pred CCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 181 DEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
....++|....++++.+.+..-.. ....|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~-~~~~~- 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE-TLLES- 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH-HHHHH-
Confidence 346799999999998887754432 3446789999999999999999874211 112334455443322 11111
Q ss_pred HHHHhcCCCCCC-CcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCC
Q 002071 261 IVEALDVSSSGL-GEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRK 328 (973)
Q Consensus 261 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~ 328 (973)
.+.+...+. ..... ......-....-.|+||+|..-....+..+...+..+. ...+||.||..
T Consensus 266 ---~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred ---HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 121111000 00000 00000011234468899998876666677777775432 12478888754
Q ss_pred h
Q 002071 329 E 329 (973)
Q Consensus 329 ~ 329 (973)
.
T Consensus 341 ~ 341 (534)
T TIGR01817 341 D 341 (534)
T ss_pred C
Confidence 3
No 287
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.64 E-value=0.093 Score=51.15 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=60.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhh-hcc--Cc---eEEEEEeCccccH--HHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEV-NRK--FD---KILWVCVSEAFEE--FRIARAIVEALDVSSSGLGEFQSLLKT 281 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 281 (973)
-.+++|+|..|.|||||++.+..-... .+. ++ .+.++ .+.... ..+...+.-. .......-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 358999999999999999999763211 111 11 12222 222211 1222222210 11122222333334
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
+.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55556666778888986432 222334444555433 456888888766543
No 288
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.054 Score=56.73 Aligned_cols=90 Identities=22% Similarity=0.174 Sum_probs=60.3
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH-hcC----CCCCCCcHHHHHHH
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA-LDV----SSSGLGEFQSLLKT 281 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~ 281 (973)
=+.-+++=|+|+.|.||||+|-+++-. ....-..++|++....++++.+.+ |+.. +.. .........++++.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 456789999999999999999888763 344445899999999998876543 3333 221 12222333344555
Q ss_pred HHHHhcCCcEEEEEecCC
Q 002071 282 ISKSITGKRFFLVLDDVW 299 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw 299 (973)
+......+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 555554556799999883
No 289
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.61 E-value=0.03 Score=61.15 Aligned_cols=134 Identities=12% Similarity=0.090 Sum_probs=73.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++..... .-...+.|++.... ...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHc
Confidence 3589999999988888765432 3456889999999999999999752111 11233445555422 222222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCC
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRK 328 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~ 328 (973)
-.-.....+... .....+. ....=.|+||+|..-....+..+...+..+. ...+||.||..
T Consensus 79 g~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 111000000000 0001111 1222357899998876666677777765432 13578887754
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.012 Score=54.61 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.--|+|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999873
No 291
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0049 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=10.8
Q ss_pred CcEEEecCCCccccchhhh
Q 002071 628 LRYLNLSHQSIEKLPETLC 646 (973)
Q Consensus 628 L~~L~Ls~~~i~~Lp~~i~ 646 (973)
|++|+|++|.++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5556666665555555444
No 292
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.60 E-value=0.059 Score=54.15 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=45.2
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhc-cCc---eEEEEEeCccccHHHHHHHHHHH---hcCCCCCCCcHHHHHHHHHH
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNR-KFD---KILWVCVSEAFEEFRIARAIVEA---LDVSSSGLGEFQSLLKTISK 284 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~~s~~~~~~~~~~~i~~~---l~~~~~~~~~~~~~~~~l~~ 284 (973)
||+|.|.+|+||||+|+.+... ... ... ....++.............--.. .....+..-+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999873 221 222 23334333332222222211111 11112344567777777777
Q ss_pred HhcCCcEEEEE
Q 002071 285 SITGKRFFLVL 295 (973)
Q Consensus 285 ~l~~kr~LlVl 295 (973)
..+++..-+-.
T Consensus 79 L~~g~~i~~p~ 89 (194)
T PF00485_consen 79 LKNGGSIEIPI 89 (194)
T ss_dssp HHTTSCEEEEE
T ss_pred HhCCCcccccc
Confidence 66677654433
No 293
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.60 E-value=0.11 Score=58.56 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=48.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
.+++.++|++|+||||++..++........-..+..|+....- ...+.++.-.+.++.+.....+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999988876532211223456666654321 112223333344443322223334454545432 3
Q ss_pred CcEEEEEecCCC
Q 002071 289 KRFFLVLDDVWD 300 (973)
Q Consensus 289 kr~LlVlDdvw~ 300 (973)
..=+|++|..-.
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 356788897643
No 294
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.59 E-value=0.0019 Score=75.67 Aligned_cols=244 Identities=20% Similarity=0.199 Sum_probs=116.2
Q ss_pred CCCCcEEEecCCC-ccc--cchhhhccccccEEecCCC-CCCcccC----ccccCCCCcceeecCCCCCCCcccccCCCc
Q 002071 625 LVHLRYLNLSHQS-IEK--LPETLCELYNLQKLDVSDC-YGLKELP----QGIGKLVNMKHLLDDKTDSLGHMPVGIGRL 696 (973)
Q Consensus 625 L~~L~~L~Ls~~~-i~~--Lp~~i~~L~~Lq~L~L~~~-~~~~~lp----~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 696 (973)
+++|+.|.+..+. +.. +-.....+++|+.|++++| ......+ .....+.+|++|+++.+..... .++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd--~~l--- 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD--IGL--- 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc--hhH---
Confidence 6777777777764 443 3345667788888888773 2222111 1223456666666666532110 000
Q ss_pred cccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCC
Q 002071 697 TSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRK 776 (973)
Q Consensus 697 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 776 (973)
......+++|+.|.+.++.. + ..+........+++|++|+|+++...
T Consensus 262 ---------------------~~l~~~c~~L~~L~l~~c~~---l--t~~gl~~i~~~~~~L~~L~l~~c~~~------- 308 (482)
T KOG1947|consen 262 ---------------------SALASRCPNLETLSLSNCSN---L--TDEGLVSIAERCPSLRELDLSGCHGL------- 308 (482)
T ss_pred ---------------------HHHHhhCCCcceEccCCCCc---c--chhHHHHHHHhcCcccEEeeecCccc-------
Confidence 00011144555555333322 1 11334445566777888888876432
Q ss_pred cchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCC--cCCC--CCCcCcccceeccccccce
Q 002071 777 EEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCK--QIPP--LGKLSSLEKLMIWGLKSVK 852 (973)
Q Consensus 777 ~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~--l~~l~~L~~L~L~~~~~l~ 852 (973)
.+..+......+++|+.|.+..... +..++.+.+..+.... .+.. +..+++|+.+.|..|. ..
T Consensus 309 --~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~ 375 (482)
T KOG1947|consen 309 --TDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-IS 375 (482)
T ss_pred --hHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-cc
Confidence 1222222334466666655443221 3455555555543321 1111 4566677777766654 32
Q ss_pred eeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCC-CC-CCCCCcceEEEcc
Q 002071 853 RVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD-HF-HQMTTLKELYILG 930 (973)
Q Consensus 853 ~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~-~l-~~l~~L~~L~i~~ 930 (973)
..+.. ....++|+|. ..+.. .....+.|+.|+++.|...+.--- .. ..+..+..+++.+
T Consensus 376 ~~~~~---~~l~gc~~l~-~~l~~---------------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~ 436 (482)
T KOG1947|consen 376 DLGLE---LSLRGCPNLT-ESLEL---------------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSG 436 (482)
T ss_pred CcchH---HHhcCCcccc-hHHHH---------------HhccCCccceEecccCccccccchHHHhhhhhccccCCccC
Confidence 22210 0111344441 11111 111233378888888865542110 00 1156677778888
Q ss_pred CCCccccc
Q 002071 931 CAIPGVRF 938 (973)
Q Consensus 931 c~~l~~~~ 938 (973)
|+......
T Consensus 437 ~~~~~~~~ 444 (482)
T KOG1947|consen 437 CRVITLKS 444 (482)
T ss_pred cccccchh
Confidence 77655443
No 295
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.58 E-value=0.073 Score=57.98 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=43.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
+.-.++-|+|.+|+|||+|+..++-...... .-..++|++....|..+.+ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3567899999999999999988764322211 1136999999999988776 456666654
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.062 Score=60.90 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=46.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE--EFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
...+|+|+|.+|+||||++.++......+.....+..++.. .+. ..+.++...+.++.......+..++...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 45799999999999999998887632222112344555442 222 2222333333333322222233344444433 3
Q ss_pred cCCcEEEEEecCCC
Q 002071 287 TGKRFFLVLDDVWD 300 (973)
Q Consensus 287 ~~kr~LlVlDdvw~ 300 (973)
.+ .=+|++|..-.
T Consensus 427 ~~-~DLVLIDTaG~ 439 (559)
T PRK12727 427 RD-YKLVLIDTAGM 439 (559)
T ss_pred cc-CCEEEecCCCc
Confidence 33 45788887743
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.045 Score=60.01 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=50.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
-.++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.....+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 46899999999999999999987321111123455555332 123445555556666654322222223333333 3445
Q ss_pred CcEEEEEecCCCC
Q 002071 289 KRFFLVLDDVWDG 301 (973)
Q Consensus 289 kr~LlVlDdvw~~ 301 (973)
+ =++++|..-..
T Consensus 216 ~-DlVLIDTaG~~ 227 (374)
T PRK14722 216 K-HMVLIDTIGMS 227 (374)
T ss_pred C-CEEEEcCCCCC
Confidence 4 45568988543
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=95.54 E-value=0.088 Score=59.12 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|.++|.+|+||||.|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998877765
No 299
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.51 E-value=0.016 Score=56.02 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=15.7
Q ss_pred cCCCCCcEEEecCCCccccch----hhhccccccEEecCC
Q 002071 623 KRLVHLRYLNLSHQSIEKLPE----TLCELYNLQKLDVSD 658 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~~Lp~----~i~~L~~Lq~L~L~~ 658 (973)
..++.|+||.+-+|.++.... -++++++|++||++.
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 334455555555544443221 134444444444443
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.50 E-value=0.17 Score=57.04 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=35.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-ccHHHHHHHHHHHhcC
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-FEEFRIARAIVEALDV 267 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 267 (973)
...+|.++|.+|+||||+|..++... ...-..+.-|++... ....+.++.++++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L--~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF--KKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 57899999999999999999988742 222123344443221 1223445556666554
No 301
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.49 E-value=0.074 Score=53.98 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=103.8
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch----hhhccCceEEEEEeCcc---------
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND----EVNRKFDKILWVCVSEA--------- 251 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~s~~--------- 251 (973)
+.++++....+..... .+...-.-++|+.|.||-|.+..+.+.- -.+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5666666666666553 2346788899999999999887665531 11122345566654432
Q ss_pred -cc-----------HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC-CcE-EEEEecCCCCCccChhhHHhhhcCCC
Q 002071 252 -FE-----------EFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG-KRF-FLVLDDVWDGDYMKWEPFYHCLKNGL 317 (973)
Q Consensus 252 -~~-----------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdvw~~~~~~w~~l~~~l~~~~ 317 (973)
.. -+-+.++|+++.....+ + ..++ +.| ++|+-.++.-..++-..++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 10 11122333333221100 0 0112 234 55566665555555566666665555
Q ss_pred CCcEEEEEcCCh-HHHHHh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 318 PESKILVTTRKE-SVAFMM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 318 ~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
..+|+|+...+- .+-..+ ...-.+++...+++|....+++.+-..+-.. | .+++.+|+++++|.--
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLR 223 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHH
Confidence 667877754432 122222 2245789999999999999988775443322 2 6788999999998764
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=95.47 E-value=0.12 Score=56.03 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc--HHHHHHHHHHHhcCCCC---CCCcHHH-HHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE--EFRIARAIVEALDVSSS---GLGEFQS-LLKTI 282 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l 282 (973)
+..+|.++|++|+||||++.+++.... ...+ .++.+. .+.+. ..+.++..++.++.+.. ...+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876322 2223 333443 33332 23345556666664321 1122222 22223
Q ss_pred HHHh-cCCcEEEEEecCCCC
Q 002071 283 SKSI-TGKRFFLVLDDVWDG 301 (973)
Q Consensus 283 ~~~l-~~kr~LlVlDdvw~~ 301 (973)
...- .+.. ++++|-.-..
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCC-EEEEECCCcc
Confidence 3222 2333 8889988543
No 303
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.45 E-value=0.11 Score=58.32 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+.++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998887763
No 304
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.11 Score=51.14 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=61.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcC--CCC---CC--------CcHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDV--SSS---GL--------GEFQ 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~---~~--------~~~~ 276 (973)
-.+++|+|..|.|||||++.++... ....+.+++.-....+.. ..+-+.++. +.. .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999997631 223344443211100000 011111110 000 00 1112
Q ss_pred H-HHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHH
Q 002071 277 S-LLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAF 333 (973)
Q Consensus 277 ~-~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (973)
+ ..-.+...+-.++=++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2 222456666677889999987442 222334455555432 23677888888876554
No 305
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.44 E-value=0.05 Score=66.22 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=75.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|+...++++.+.+..-. .....|.|+|..|+|||++|+.+++.... . -...+.+++..-. ...+...+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~-~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR-N-NRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC-C-CCCeEEEecccCC-hhHhhhhhc
Confidence 469999999888877665432 13457999999999999999999874211 1 1234445444322 111111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCCh
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRKE 329 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~~ 329 (973)
........+.. ......+ -....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111101100 0011111 11223569999998876666667777765432 345888888653
No 306
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.42 E-value=0.089 Score=56.93 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
+.-.++-|+|.+|+|||||+..++....... .-..++|++....+....+ .++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3578999999999999999998865322211 1236799998888777763 445555543
No 307
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.099 Score=57.88 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=53.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhh--ccCceEEEEEeCccccH--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVN--RKFDKILWVCVSEAFEE--FRIARAIVEALDVSSSGLGEFQSLLKTISK 284 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 284 (973)
..++|.++|..|+||||.+..++...... .+-..+..+++. .+.. ...++..++.++.+-......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 45799999999999999998887632221 112244455544 3332 233555566665543333344555444444
Q ss_pred HhcCCcEEEEEecCCCC
Q 002071 285 SITGKRFFLVLDDVWDG 301 (973)
Q Consensus 285 ~l~~kr~LlVlDdvw~~ 301 (973)
. .+.-++++|..-..
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 3 34568888988543
No 308
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.37 E-value=0.064 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998763
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.34 E-value=0.035 Score=55.90 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=57.6
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH-HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF-RIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
.+|.|+|..|.||||++..+... ........+++ +.++.... .-...++.+-.. ..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 37899999999999999987763 33333344443 22221110 000011111000 111223445566777666
Q ss_pred cEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 290 RFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
.=.+++|.+-+. +.+. ..+.....|-.++.|+-..++..
T Consensus 75 pd~ii~gEird~--e~~~---~~l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIR---LALTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHH---HHHHHHHcCCEEEEEecCCcHHH
Confidence 779999999543 2222 22222234556777776555443
No 310
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.34 E-value=0.19 Score=61.73 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=91.1
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.++.|.+..++++.+.+.-.-. -+-...+-|.++|++|.|||++|+.+++. ....| +.++.+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4578888887777776532110 01123445888999999999999999883 22222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC------ccCh------hhHHhhhcC--CCCCcE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD------YMKW------EPFYHCLKN--GLPESK 321 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~w------~~l~~~l~~--~~~gs~ 321 (973)
+++...- + .....+...+...-+....+|+||+++.-. .... ..+...+.. ...+.-
T Consensus 522 ----~l~~~~v----G-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV----G-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc----C-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111110 0 011112222222224567899999985320 0011 112222221 123445
Q ss_pred EEEEcCChHHHH-H-h---CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 322 ILVTTRKESVAF-M-M---GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 322 iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
||.||...+... . + .-...+.+...+.++-.++|..+.... ......++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHcCCCC
Confidence 666665544221 1 1 124578888889999999987654322 11111222 44666676643
No 311
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.33 E-value=0.06 Score=55.07 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 312
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.32 E-value=0.07 Score=58.12 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=41.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALD 266 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (973)
.-.++-|+|.+|+||||++.+++....... .=..++||+....|+.+.+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 468999999999999999998875422211 11379999999988877654 4455544
No 313
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.31 E-value=0.065 Score=52.68 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc--cccHHHHHHHHHHHhcC--CCCC----------CCcH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE--AFEEFRIARAIVEALDV--SSSG----------LGEF 275 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 275 (973)
-.+++|+|..|.|||||++.+..- .....+.+++.-.. ........ +.+.. +... ...-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 358999999999999999999763 12223333332110 01111111 11111 0000 1111
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHH
Q 002071 276 QSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAF 333 (973)
Q Consensus 276 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (973)
+...-.+...+-.+.-++++|+.... +......+...+..- ..|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22222344555566678899987542 222334444444432 24677888888876654
No 314
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.55 Score=50.21 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=90.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcch--------hhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNND--------EVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLK 280 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 280 (973)
-.++.-++|..|.||+++|..+.+.- .-..|-+...++.... .....+++.+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHH
Confidence 45677799999999999998886631 0011111223332111 1112223222
Q ss_pred HHHHH-----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHHHH-hCCCCeeeCCCCCHHHHHH
Q 002071 281 TISKS-----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVAFM-MGSTDIIPVQELAEEECWL 353 (973)
Q Consensus 281 ~l~~~-----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~ 353 (973)
...+. -++++-++|+|++...+....+.+...+..-..++.+|++|.+ ..+... ...+..+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22221 1257888999999777666777888888776677777766543 334332 3446789999999999988
Q ss_pred HHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 354 LFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 354 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
.+.... .+ .+.+..++...+|.=-|+..
T Consensus 157 ~l~~~~---~~-------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 157 KLLSKN---KE-------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHcC---CC-------hhHHHHHHHHcCCHHHHHHH
Confidence 776541 11 22345556666663245544
No 315
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.28 E-value=0.068 Score=55.29 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+...+|+|.|..|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999999886
No 316
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.037 Score=51.49 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=32.3
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCC
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVS 268 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (973)
+|.|-|.+|.||||+|+.+.++.... .| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999998742221 12 2235788888887764
No 317
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.23 E-value=0.045 Score=55.70 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=59.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC---CCCcHHHHHHHHHHH-
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS---GLGEFQSLLKTISKS- 285 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~- 285 (973)
.+++.|+|..|.||||+.+.+...... .+-...+|..-... ....++...+..... .......-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~----~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATI----GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEE----eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999998642111 11122222210000 011111222221111 111111112222222
Q ss_pred -hcCCcEEEEEecCCCCCc-cChhh----HHhhhcC-CCCCcEEEEEcCChHHHHHh
Q 002071 286 -ITGKRFFLVLDDVWDGDY-MKWEP----FYHCLKN-GLPESKILVTTRKESVAFMM 335 (973)
Q Consensus 286 -l~~kr~LlVlDdvw~~~~-~~w~~----l~~~l~~-~~~gs~iivTtr~~~v~~~~ 335 (973)
+..++.|++||..-.... ..... +...+.. +..+..+|+||-+.+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 236789999999865321 11111 2222322 23346899999998877654
No 318
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0014 Score=65.90 Aligned_cols=100 Identities=24% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccc--h
Q 002071 566 RIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLP--E 643 (973)
Q Consensus 566 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp--~ 643 (973)
.+.+++.|.+.|+.++ + -.+..+|+.|+||.|+-|.+ ..+ ..+.++..|+.|.|+.|.|..+- .
T Consensus 17 dl~~vkKLNcwg~~L~------D--Isic~kMp~lEVLsLSvNkI-----ssL-~pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD------D--ISICEKMPLLEVLSLSVNKI-----SSL-APLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHHhhhhcccCCCcc------H--HHHHHhcccceeEEeecccc-----ccc-hhHHHHHHHHHHHHHhcccccHHHHH
Confidence 4567778888887652 2 23478899999999999544 334 45788999999999999988764 4
Q ss_pred hhhccccccEEecCCCCCCcccCc-----cccCCCCcceee
Q 002071 644 TLCELYNLQKLDVSDCYGLKELPQ-----GIGKLVNMKHLL 679 (973)
Q Consensus 644 ~i~~L~~Lq~L~L~~~~~~~~lp~-----~i~~L~~L~~L~ 679 (973)
.+.+|++|++|.|..|.....-+. .+.-|+||+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 678999999999998875554443 245688898886
No 319
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.21 E-value=0.12 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 320
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.19 E-value=0.024 Score=59.97 Aligned_cols=96 Identities=24% Similarity=0.305 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH-hcCCCC
Q 002071 192 KNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA-LDVSSS 270 (973)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~ 270 (973)
...+++.+... -+-+.++|+.|+|||++++....... ...| ...-++.+...+...+++ ++++ +....
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~- 90 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQK-IIESKLEKRR- 90 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHH-CCCTTECECT-
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCC-
Confidence 34566666542 35679999999999999999875311 1111 234455665544444432 2222 11110
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChh
Q 002071 271 GLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWE 307 (973)
Q Consensus 271 ~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~ 307 (973)
+. . ..--.+|+.++++||+.-...+.|.
T Consensus 91 ~~-~--------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 91 GR-V--------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp TE-E--------EEEESSSEEEEEEETTT-S---TTS
T ss_pred CC-C--------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 00 0 0001478999999999776666654
No 321
>PRK07667 uridine kinase; Provisional
Probab=95.18 E-value=0.023 Score=56.94 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 192 KNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665443 3558999999999999999999987
No 322
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.18 E-value=0.08 Score=53.50 Aligned_cols=95 Identities=24% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-ccHHHHHHHHHHHhcCC-----
Q 002071 195 LISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-FEEFRIARAIVEALDVS----- 268 (973)
Q Consensus 195 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~----- 268 (973)
.++.|..-. .-..++|+|.+|+|||+|++.+.++. .-+.++++.+.+. .+..++.+++-..-...
T Consensus 5 ~ID~l~Pig-----~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv 75 (215)
T PF00006_consen 5 AIDLLFPIG-----RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVV 75 (215)
T ss_dssp HHHHHSCEE-----TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred eeccccccc-----cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccc
Confidence 455555432 22468999999999999999998753 2345588888765 45566666664331111
Q ss_pred --CCCCCcHHH-----HHHHHHHHh--cCCcEEEEEecC
Q 002071 269 --SSGLGEFQS-----LLKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 269 --~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 298 (973)
..+...... ..-.+.+++ +++..|+++||+
T Consensus 76 ~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 76 AATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp EEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred cccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 111111111 111123333 699999999998
No 323
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.17 E-value=0.17 Score=52.78 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=72.5
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhcc----------CceEEEEEeCccc-cHHHHHHHHHHHhcCCCC--------C-
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRK----------FDKILWVCVSEAF-EEFRIARAIVEALDVSSS--------G- 271 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~--------~- 271 (973)
+..|+|++|+||||||..++-....... =..+++++...+. .+..-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999888653111111 1234555555443 234444455554421100 0
Q ss_pred -------C---CcHHHHHHHHHHHh-cCCcEEEEEecCCC------CCccChhhHHhhhcC--CCCCcEEEEEcCChHHH
Q 002071 272 -------L---GEFQSLLKTISKSI-TGKRFFLVLDDVWD------GDYMKWEPFYHCLKN--GLPESKILVTTRKESVA 332 (973)
Q Consensus 272 -------~---~~~~~~~~~l~~~l-~~kr~LlVlDdvw~------~~~~~w~~l~~~l~~--~~~gs~iivTtr~~~v~ 332 (973)
. .......+.+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|..||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00112223333333 35667999996532 122233444444432 23467788877654221
Q ss_pred H--------------HhC-CCCeeeCCCCCHHHHHHH
Q 002071 333 F--------------MMG-STDIIPVQELAEEECWLL 354 (973)
Q Consensus 333 ~--------------~~~-~~~~~~l~~L~~~~~~~l 354 (973)
. ..+ ....+.+.+++++|+.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 011 123667778888877663
No 324
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.13 E-value=0.089 Score=55.77 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKS 285 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (973)
....+|+|.|..|+||||+|+.+.. ...... ..+..++...-...........-.-....++.-+.+.+.+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4578999999999999999987754 222111 134444444332222222211100001123445566666666666
Q ss_pred hcCC
Q 002071 286 ITGK 289 (973)
Q Consensus 286 l~~k 289 (973)
-.++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 325
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.11 E-value=0.1 Score=52.77 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=51.8
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEE-------EeCccccHHHH--HHHHHHHhcCCCCCC-----
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWV-------CVSEAFEEFRI--ARAIVEALDVSSSGL----- 272 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~s~~~~~~~~--~~~i~~~l~~~~~~~----- 272 (973)
......|.++||+|.||||..|..+.+..-++.-..++=. ...-+.++++. .++..++....+.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 3456788899999999999999998753322221222211 12334455553 577888877654332
Q ss_pred ----CcHHHHHHHHHHHhcCCcEEEEEecC
Q 002071 273 ----GEFQSLLKTISKSITGKRFFLVLDDV 298 (973)
Q Consensus 273 ----~~~~~~~~~l~~~l~~kr~LlVlDdv 298 (973)
...++.+..+.+.-..-.|. ++|--
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~-liDTP 124 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYV-LIDTP 124 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEE-EEcCC
Confidence 23455555555554343444 34543
No 326
>PHA02244 ATPase-like protein
Probab=95.09 E-value=0.075 Score=57.52 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-|.|+|.+|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999873
No 327
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.99 E-value=0.017 Score=53.49 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEeCCCChHHHHHHHHhcc
Q 002071 213 ISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (973)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 328
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.97 E-value=0.17 Score=52.62 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=34.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
.-.++.|.|.+|+|||++|.++.... . ..-..++||+..+ +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 56899999999999999998875421 1 2346788888765 34444444
No 329
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.97 E-value=0.33 Score=52.04 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=38.0
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHH
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (973)
++=.......+...+.. .+.|.|.|.+|+||||+|+.++. +.... .+.|.++...+..++
T Consensus 47 y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 33334455667777743 23599999999999999999987 23222 235555555554433
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.96 E-value=0.14 Score=52.79 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=31.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
-.++.|.|.+|.||||+|.++.... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4599999999999999986665432 1222 4556776443 345555555
No 331
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.96 E-value=0.21 Score=57.23 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=81.1
Q ss_pred CceecchhHHHHHHHHhcC---CC-ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHH
Q 002071 183 EEICGRVSEKNELISKLLC---ES-SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIA 258 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~---~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (973)
.++.|.+..++.+.+.... .. .-+-...+-|-++|++|.|||.+|+.+.+. ..-.| +-+..+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------h-
Confidence 4577877666665542211 00 001234567899999999999999999873 22222 1122111 1
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc-------cCh-h----hHHhhhcCCCCCcEEEEEc
Q 002071 259 RAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY-------MKW-E----PFYHCLKNGLPESKILVTT 326 (973)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-------~~w-~----~l~~~l~~~~~gs~iivTt 326 (973)
.. ...+ .....+.+.+...-...+++|++|+++..-. ..+ . .+...+.....+.-||.||
T Consensus 296 ---~~----~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---FG----GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---cc----cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 00 0000 0111122222222235689999999963210 001 1 1222222233344566677
Q ss_pred CChHH-HHHh----CCCCeeeCCCCCHHHHHHHHHHHhcc
Q 002071 327 RKESV-AFMM----GSTDIIPVQELAEEECWLLFNRIAFF 361 (973)
Q Consensus 327 r~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 361 (973)
..... -..+ .-...+.+..-+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65431 1111 12457888888999999999887654
No 332
>PRK05439 pantothenate kinase; Provisional
Probab=94.94 E-value=0.13 Score=54.90 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=43.7
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC--ceEEEEEeCccccHHHHHHH--HHHHhcCCCCCCCcHHHHHHHH
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF--DKILWVCVSEAFEEFRIARA--IVEALDVSSSGLGEFQSLLKTI 282 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~l 282 (973)
.....+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-+-..+.+.. +... ...++.-+.+.+.+.|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~--kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKR--KGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhhhcccc--CCCcccccHHHHHHHH
Confidence 45678999999999999999998865 222221 23344444332222221111 1111 1123344566666666
Q ss_pred HHHhcCCc
Q 002071 283 SKSITGKR 290 (973)
Q Consensus 283 ~~~l~~kr 290 (973)
.....|+.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66656654
No 333
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.17 Score=61.01 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=75.7
Q ss_pred ceecchhHHHHHHHHhcCCCcc-CC-CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESSE-HQ-KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~-~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
.++|-++.+..|.+.+.....+ .+ .........|+.|+|||-||+.+.. -+-+..+..+-++.|+-..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e-------- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE-------- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh--------
Confidence 4778888888888877654321 12 2567788899999999999999976 2333334445555454222
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcE-EEEEecCCCCCccChhhHHhhhcCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRF-FLVLDDVWDGDYMKWEPFYHCLKNG 316 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~w~~l~~~l~~~ 316 (973)
...+.+.+++....+ ....|.+.++.+.| +|+||||...+......+...+..|
T Consensus 633 vskligsp~gyvG~e-~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKE-EGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCcccccch-hHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 333333333222211 12356677777766 6669999888776666666666554
No 334
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.93 E-value=0.092 Score=57.12 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=47.5
Q ss_pred CeEEEEEEeCCCChHH-HHHHHHhcchhhhccCceEEEEEeCcc-ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKT-ALAQLACNNDEVNRKFDKILWVCVSEA-FEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
.-+||.+||+.|+||| |||+..+.... ...=..+..++...- ....+-++.-++-++.+-.-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 3789999999999998 56666655321 122235566655432 2233444455555555433333444444433332
Q ss_pred cCCcEEEEEecCCC
Q 002071 287 TGKRFFLVLDDVWD 300 (973)
Q Consensus 287 ~~kr~LlVlDdvw~ 300 (973)
++. =+|.+|-+-.
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 333 3455565543
No 335
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.92 E-value=0.076 Score=62.05 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=76.9
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
...++|....++++.+.+..-.. ....|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+..++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHh
Confidence 45699999999998888865432 4557899999999999999999873211 112345555554332 1111121
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCCh
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRKE 329 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~~ 329 (973)
.-...+...+... .....+. ....=-|+||+|..-.......+...+..+. ...+||.||...
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1111111000000 0000111 1122246899998876666677777775432 245888888643
No 336
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.12 Score=61.37 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=84.4
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch---hhhccC-ceEEEEEeCccccHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND---EVNRKF-DKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~~s~~~~~~~~~~ 259 (973)
.++||++|++++++.|..... + --.++|.+|+|||++|.-.+... .+-..- +..++. .
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K--N----NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----L------- 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK--N----NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----L------- 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC--C----CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----e-------
Confidence 489999999999999987642 1 12468999999999875554410 111111 111111 0
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCC---------CccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDG---------DYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~---------~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
+|..-..+. .-..+.++....+.+.+ +.++..|++|.++.. ..+.-+.+..+|..|. -++|-.|...
T Consensus 233 D~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGATT~~ 309 (786)
T COG0542 233 DLGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGATTLD 309 (786)
T ss_pred cHHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEeccHH
Confidence 111111111 11234555555555555 355899999998542 1223333444444432 2444444433
Q ss_pred HHHHHh-------CCCCeeeCCCCCHHHHHHHHHHH
Q 002071 330 SVAFMM-------GSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 330 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
+.-+.+ .--+.+.+..-+.+++...+.-.
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 322222 22357788889999988888643
No 337
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.92 E-value=0.16 Score=53.79 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=47.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH--HHHHHHHHHhcCCC---CCCCcHHH-HHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF--RIARAIVEALDVSS---SGLGEFQS-LLKTI 282 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 282 (973)
..+++.++|.+|+||||++.+++.. ....-..+.+++.. .+... +-++..++..+..- ....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888763 33332345555543 23222 22333344444221 11112222 22334
Q ss_pred HHHhcCCcEEEEEecCCC
Q 002071 283 SKSITGKRFFLVLDDVWD 300 (973)
Q Consensus 283 ~~~l~~kr~LlVlDdvw~ 300 (973)
.....+..=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 433334455778887643
No 338
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.90 E-value=0.068 Score=58.33 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=68.4
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
++|....++++.+.+..-.. ....|.|+|..|+||+++|+.+++.... .-...+-|+++... ...+...+.-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~-~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS-ENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC-hHHHHHHHhcc
Confidence 46777777777776654432 3456899999999999999999763211 11223344444322 11111122110
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCC
Q 002071 265 LDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRK 328 (973)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~ 328 (973)
-.+...+... .....+ -....-.|+||+|..-.......+...+..+. ...+||.||..
T Consensus 74 ~~g~~~ga~~--~~~G~~---~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRF---ERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccccccCccc--ccCCch---hhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 0000000000 000001 11234458999998766555666766665432 23478877753
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.89 E-value=0.28 Score=47.42 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=63.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEE---EeCccccHHHHHHHHHHHhc-----CC----CCCCCc----
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWV---CVSEAFEEFRIARAIVEALD-----VS----SSGLGE---- 274 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~~s~~~~~~~~~~~i~~~l~-----~~----~~~~~~---- 274 (973)
..|-|++-.|.||||.|.-..- +..++=-.++.+ .-.........++.. .+. .. ..+...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 5778888899999999977655 222222222222 222123333343332 111 10 001000
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCCC---CCccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 275 FQSLLKTISKSIT-GKRFFLVLDDVWD---GDYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 275 ~~~~~~~l~~~l~-~kr~LlVlDdvw~---~~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
..+..+..++.+. ++-=|+|||.+-. ......+.+...+.....+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1122333444444 4455999999842 122345678888877777889999999864
No 340
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.13 Score=52.85 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=66.8
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchh-hhc---c-------C---ceEEEEEe----Ccc--ccH----------------
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDE-VNR---K-------F---DKILWVCV----SEA--FEE---------------- 254 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~---~-------F---~~~~wv~~----s~~--~~~---------------- 254 (973)
..++|+|+.|.|||||.+.+..-.. .++ . + ..+.||.= ... .++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999866100 000 0 1 23555531 111 111
Q ss_pred ------HHHHHHHHHHhcCCC-----CCCCcHHHH-HHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCc
Q 002071 255 ------FRIARAIVEALDVSS-----SGLGEFQSL-LKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPES 320 (973)
Q Consensus 255 ------~~~~~~i~~~l~~~~-----~~~~~~~~~-~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs 320 (973)
++...+.++.++... -...+-.+. .-.|.+.|..+.=|+|||.--.. |...-..+.+.+..- ..|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 233444555554431 112223333 34567788888999999975321 111223344444321 2388
Q ss_pred EEEEEcCChHHH
Q 002071 321 KILVTTRKESVA 332 (973)
Q Consensus 321 ~iivTtr~~~v~ 332 (973)
-||++|-+-...
T Consensus 191 tIl~vtHDL~~v 202 (254)
T COG1121 191 TVLMVTHDLGLV 202 (254)
T ss_pred EEEEEeCCcHHh
Confidence 899999876543
No 341
>PTZ00301 uridine kinase; Provisional
Probab=94.88 E-value=0.032 Score=56.37 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 342
>PTZ00035 Rad51 protein; Provisional
Probab=94.88 E-value=0.18 Score=55.13 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=41.1
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhh----ccCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVN----RKFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
+.-.++-|+|.+|+|||||+..++-..... +.=..++|++....|+.+.+ .++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 356899999999999999998886432211 12245779998887777764 444555543
No 343
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.1 Score=51.63 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=59.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcC--CCCC---C----------Cc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDV--SSSG---L----------GE 274 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~~---~----------~~ 274 (973)
-.+++|+|..|.|||||++.+... .....+.+.+.-.+......-.....+.+.. +... . -+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 458999999999999999999752 1223344443211000000000011111110 0000 0 11
Q ss_pred H-HHHHHHHHHHhcCCcEEEEEecCCC-CCccChhhHHhhhcCC-CC-CcEEEEEcCChHHHH
Q 002071 275 F-QSLLKTISKSITGKRFFLVLDDVWD-GDYMKWEPFYHCLKNG-LP-ESKILVTTRKESVAF 333 (973)
Q Consensus 275 ~-~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~w~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 333 (973)
. +...-.+...+..+.=++++|+--. -+......+...+... .. |..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1 2222234556666778889998743 2333334455555432 22 567888887765544
No 344
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.87 E-value=0.1 Score=57.60 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=48.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSG-----LGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 283 (973)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.. ..+ +.-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3569999999999999999998763 22333567888765432 222 2223444432211 123444443332
Q ss_pred HHhcCCcEEEEEecC
Q 002071 284 KSITGKRFFLVLDDV 298 (973)
Q Consensus 284 ~~l~~kr~LlVlDdv 298 (973)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888877
No 345
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.84 E-value=0.019 Score=46.36 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|.+|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 346
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.056 Score=53.86 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+.+|+|.|.+|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 347
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.82 E-value=0.24 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 35899999999999999999865
No 348
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.79 E-value=0.39 Score=47.39 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=70.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC-------------------c--------------------
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS-------------------E-------------------- 250 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-------------------~-------------------- 250 (973)
-.|++|+|+.|.|||||.+-+..=+ ..=++.+||.-. +
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4599999999999999999885421 111334444210 1
Q ss_pred -----cccHHHHHHHHHHHhcCCC-----C-CCCcHHHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcC-CC
Q 002071 251 -----AFEEFRIARAIVEALDVSS-----S-GLGEFQSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKN-GL 317 (973)
Q Consensus 251 -----~~~~~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~-~~ 317 (973)
....++...++++.++... + ..+.-++..-.|.+.|.=++-++.+|..-+. +++--..+...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1122344455555555532 2 2233344445577888777778899998553 22222333333333 24
Q ss_pred CCcEEEEEcCChHHHHHh
Q 002071 318 PESKILVTTRKESVAFMM 335 (973)
Q Consensus 318 ~gs~iivTtr~~~v~~~~ 335 (973)
.|--+|+.|-...-|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 677777778776666553
No 349
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.4 Score=54.96 Aligned_cols=54 Identities=24% Similarity=0.180 Sum_probs=35.7
Q ss_pred cCCCceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 180 IDEEEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
++-+++=|-++-++++-+...-+.. -+-...+=|-.+|+||.|||++|+.+++.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 3334566677666666544432110 02235678899999999999999999983
No 350
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.15 Score=55.52 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=53.7
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI 286 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (973)
.+.+++.++|+.|+||||++..++... ...-..+.+|++.... ...+-++..++.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999999887642 2222345666654321 2244555566666544322334455544444332
Q ss_pred -cCCcEEEEEecCCC
Q 002071 287 -TGKRFFLVLDDVWD 300 (973)
Q Consensus 287 -~~kr~LlVlDdvw~ 300 (973)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456778887744
No 351
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.78 E-value=0.12 Score=52.23 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=60.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcch---hhhcc--Cc---------------eEEEEEeCccccH--HHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNND---EVNRK--FD---------------KILWVCVSEAFEE--FRIARAIVEALDV 267 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~--F~---------------~~~wv~~s~~~~~--~~~~~~i~~~l~~ 267 (973)
-.+++|+|..|.|||||.+.+.... ...+. |+ .+.++ .+.... .....++++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~-- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYV-- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhc--
Confidence 4689999999999999999987641 01110 00 01121 111110 00111111111
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCC-CCccChhhHHhhhcCC-CCCcEEEEEcCChHHHH
Q 002071 268 SSSGLGEFQSLLKTISKSITGKRFFLVLDDVWD-GDYMKWEPFYHCLKNG-LPESKILVTTRKESVAF 333 (973)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (973)
......-+...-.+...+-.+.-++++|+.-. -+......+...+... ..|..||++|.+.....
T Consensus 102 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 -NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 01112222223335556666777899998743 2223344455555432 23667888888877655
No 352
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.77 E-value=0.005 Score=72.08 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred ccccccEEecCCCCCCcc--cCccccCCCCcceeecCCC
Q 002071 647 ELYNLQKLDVSDCYGLKE--LPQGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~ 683 (973)
.+++|+.|.+.+|..+.. +-.....+++|+.|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 367777777777765554 3344556777777777663
No 353
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.77 E-value=0.2 Score=50.86 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=37.8
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcC-CCCCcEEEEEcCChHHHHHhCCCCeeeCCCCC
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKN-GLPESKILVTTRKESVAFMMGSTDIIPVQELA 347 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~ 347 (973)
+...+-.+.-++++|+--.. +......+...+.. ...|..||++|.+...... ..++.++..+
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 44555566789999987432 22334455555543 2346778888887665432 5666666543
No 354
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.72 E-value=0.25 Score=52.62 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=36.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHh
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEAL 265 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (973)
-.++.|.|.+|+||||++.++..+. ...+=..++|+++..+ ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 4588899999999999999887632 1222356888887663 345555555443
No 355
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.71 E-value=0.044 Score=51.92 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=26.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC 247 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 247 (973)
..||-|.|.+|+||||||+.+.. +....-..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999987 4444444555554
No 356
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.71 E-value=0.026 Score=57.38 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+...+|+|+|.+|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999976
No 357
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.05 Score=53.32 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 358
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.70 E-value=0.14 Score=57.23 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhc-----CC-CCCCCcHH-----HH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALD-----VS-SSGLGEFQ-----SL 278 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~-~~~~~~~~-----~~ 278 (973)
-..++|+|..|+|||||++.+.... .....++|..-....++.++....+.... .- ..+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3579999999999999999887632 22334555543233344444333333221 10 11111111 11
Q ss_pred HHHHHHHh--cCCcEEEEEecCC
Q 002071 279 LKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 279 ~~~l~~~l--~~kr~LlVlDdvw 299 (973)
.-.+.+++ +++.+|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 22244454 5899999999983
No 359
>PRK08233 hypothetical protein; Provisional
Probab=94.66 E-value=0.025 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999976
No 360
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.65 E-value=0.17 Score=58.45 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=43.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC 247 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 247 (973)
.+++--.+-++++..||..... +....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 4555566778888888865432 2334579999999999999999999873 2467777864
No 361
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.65 E-value=0.027 Score=57.44 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 362
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.64 E-value=0.068 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=18.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..|.|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999774
No 363
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.63 E-value=0.32 Score=49.98 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAFM 334 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~ 334 (973)
+...+-.++-++++|..-.. +....+.+...+..-..+..||++|.+......
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 44555667789999987442 223334455555433234678888887765543
No 364
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.62 E-value=0.059 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+..++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 365
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.61 E-value=0.033 Score=57.06 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999876
No 366
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.60 E-value=0.18 Score=52.48 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=55.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhh--hccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHHH---
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEV--NRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQS--- 277 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 277 (973)
..++|+|-.|+|||+|+..+.++..+ +++-+.++++-+.+.. +..++..++...=... ..+......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999998875321 1234678888887654 4555666555432211 111111111
Q ss_pred --HHHHHHHHh--c-CCcEEEEEecCC
Q 002071 278 --LLKTISKSI--T-GKRFFLVLDDVW 299 (973)
Q Consensus 278 --~~~~l~~~l--~-~kr~LlVlDdvw 299 (973)
..-.+.+++ + +++.|+++||+-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 122345555 3 789999999984
No 367
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.58 E-value=0.042 Score=61.65 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=82.0
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH-H
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI-V 262 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i-~ 262 (973)
.++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|... -+..+ ...+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHHH
Confidence 48999999999999887543 48899999999999999998632222233321 01111 112222111 1
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcC---CcEEEEEecCCCCCccChhhHHhhhcCCC---------CCcEEEEEcCChH
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITG---KRFFLVLDDVWDGDYMKWEPFYHCLKNGL---------PESKILVTTRKES 330 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdvw~~~~~~w~~l~~~l~~~~---------~gs~iivTtr~~~ 330 (973)
..... .. .+.....| .-=++++|+++.........+...+.... -..++++++.++-
T Consensus 89 ~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 11100 00 00111111 11289999999877666666666663221 1235655555432
Q ss_pred HH------HHhC-CCCeeeCCCCCH-HHHHHHHHHH
Q 002071 331 VA------FMMG-STDIIPVQELAE-EECWLLFNRI 358 (973)
Q Consensus 331 v~------~~~~-~~~~~~l~~L~~-~~~~~lf~~~ 358 (973)
.. ..+. -.-.+.+++++. ++..+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 21 1111 123678899975 4447777653
No 368
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.56 E-value=0.04 Score=53.34 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=62.1
Q ss_pred HhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCC--CcCCCCCCcCcccceeccccccceeeCcccccc
Q 002071 784 LEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKC--KQIPPLGKLSSLEKLMIWGLKSVKRVANEFLGI 861 (973)
Q Consensus 784 l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 861 (973)
+..|+.++.|..|.+.+|.++..-|.--..+++|..|.|.+|.+. .++.++..+|.|++|.+-+-+--..-.-..+-
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv- 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV- 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE-
Confidence 456777889999999999998833444446889999999998754 35777888999999998762211000000010
Q ss_pred cCCCCCcccEeecccc
Q 002071 862 EIIAFPKLKSLTFYWM 877 (973)
Q Consensus 862 ~~~~f~~L~~L~l~~~ 877 (973)
.-.+|+|+.|++...
T Consensus 136 -l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 -LYKLPSLRTLDFQKV 150 (233)
T ss_pred -EEecCcceEeehhhh
Confidence 115778888877654
No 369
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.56 E-value=0.088 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 370
>PRK06547 hypothetical protein; Provisional
Probab=94.52 E-value=0.047 Score=53.33 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999763
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.11 Score=50.18 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=62.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc--cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF--EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
.+++|+|..|.|||||++.+... . ......+++.-.... ..... ...+..... ...-+...-.+...+-.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 68999999999999999999873 1 234455555322111 11111 111111111 11122222335555556
Q ss_pred CcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHHH
Q 002071 289 KRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAFM 334 (973)
Q Consensus 289 kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 334 (973)
..-++++|+.-.. +......+...+... ..+.-++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6788999988532 222334444444321 125678888887766554
No 372
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.48 E-value=0.43 Score=48.45 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=31.6
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
+.+.+-.+.-++++|+.... +....+.+...+.....|..||++|.+.....
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 44555566778889987542 22334445555554334677888888776554
No 373
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.48 E-value=0.32 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999865
No 374
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.45 E-value=0.048 Score=50.22 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 190 SEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 190 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
++.+++.+.|...- ..-.+|.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45556666664332 13458999999999999999999874
No 375
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.38 E-value=0.32 Score=50.09 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAF 333 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (973)
+...+-..+-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 44555566788899987432 233344455555432 24667888988877554
No 376
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.21 Score=55.70 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=46.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+++++|..|+||||++..+..........+.+..++... .....+-+...++.++.+.....+..++...+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 357999999999999999988765311122223444444322 122333344555555544333333333332222 234
Q ss_pred CCcEEEEEecC
Q 002071 288 GKRFFLVLDDV 298 (973)
Q Consensus 288 ~kr~LlVlDdv 298 (973)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 34566655
No 377
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.36 E-value=0.31 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 378
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.34 E-value=0.24 Score=49.18 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAF 333 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (973)
+...+-.++-++++|+--.. +......+...+..- ..|..||++|.+.....
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55556667788999987432 223344455555432 24677888888865443
No 379
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.33 E-value=0.18 Score=56.31 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=49.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCC-------CCCCCcHHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVS-------SSGLGEFQS----- 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 277 (973)
-..++|+|..|+|||||++.+..... ....++...-.......++....+..-+.. ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 35799999999999999998886321 122233222233344555555444332221 112222111
Q ss_pred HHHHHHHHh--cCCcEEEEEecCC
Q 002071 278 LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 278 ~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++..|+++||+-
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 122245555 5899999999993
No 380
>PRK03839 putative kinase; Provisional
Probab=94.33 E-value=0.03 Score=55.56 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=20.0
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 381
>PRK04328 hypothetical protein; Provisional
Probab=94.31 E-value=0.16 Score=53.23 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=31.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF 252 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 252 (973)
.-.++.|.|.+|.|||+||.++... ....-...+|++..+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCH
Confidence 4679999999999999999987653 12234577888877643
No 382
>PRK06762 hypothetical protein; Provisional
Probab=94.29 E-value=0.033 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 383
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.29 E-value=0.18 Score=56.15 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=52.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHHH----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQS---- 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (973)
-..++|+|..|+|||||++.+.+. ...+.++.+-+.+.. ...++...++..-... ..+......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999863 122566666666544 3455555554432211 111111111
Q ss_pred -HHHHHHHHh--cCCcEEEEEecCC
Q 002071 278 -LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 278 -~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++.+|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 122244555 6899999999993
No 384
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.28 E-value=0.32 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 385
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.26 E-value=0.31 Score=48.90 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=58.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE---------------eCcccc---HHHHHHHHHHHhcCCCCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC---------------VSEAFE---EFRIARAIVEALDVSSSG 271 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------~s~~~~---~~~~~~~i~~~l~~~~~~ 271 (973)
-.+++|.|..|.|||||.+.+..-.. .....+.+++. +.+... ...+...+.-..... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 46899999999999999999976320 01222222221 111110 011112111100000 1
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChH
Q 002071 272 LGEFQSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKES 330 (973)
Q Consensus 272 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~ 330 (973)
...-+...-.+...+-.+.-++++|+.-.. +......+...+... ..|.-||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 111222222345555566778999987432 223344555555432 24677888888764
No 386
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.16 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999975
No 387
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.19 E-value=0.19 Score=56.70 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=56.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|.+|+|||||+.++.++.. +.+-+.++++-+.+.. ...++..++...-... ..+.....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35789999999999999998887533 2356788888776544 4455655555432211 11221111
Q ss_pred HHHHHHHHHh---cCCcEEEEEecCC
Q 002071 277 SLLKTISKSI---TGKRFFLVLDDVW 299 (973)
Q Consensus 277 ~~~~~l~~~l---~~kr~LlVlDdvw 299 (973)
...-.+.+++ +++.+|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 1223355666 3899999999993
No 388
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.17 E-value=0.22 Score=56.07 Aligned_cols=89 Identities=20% Similarity=0.177 Sum_probs=54.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHHH----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQS---- 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (973)
-..++|+|.+|+|||||+.++..+... .+=+.++++-+.+.. .+.++..++...-... ..+......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999988764221 112467777776544 4566666665532211 112222211
Q ss_pred -HHHHHHHHh---cCCcEEEEEecCC
Q 002071 278 -LLKTISKSI---TGKRFFLVLDDVW 299 (973)
Q Consensus 278 -~~~~l~~~l---~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++.+||++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 222355666 6899999999993
No 389
>PRK00625 shikimate kinase; Provisional
Probab=94.13 E-value=0.033 Score=54.37 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 390
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.13 E-value=0.1 Score=52.56 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCc---HHHHHHHHHHHh
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGE---FQSLLKTISKSI 286 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l 286 (973)
..++.|.|..|.||||+.+.+.-.. +..+.. .+|.+.. .. -.+...|...++........ ...-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G--~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIG--CFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcC--CCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886431 111111 1121111 01 12223333333322111111 111011122222
Q ss_pred --cCCcEEEEEecCCCCC-ccCh----hhHHhhhcCCCCCcEEEEEcCChHHHHHhCC
Q 002071 287 --TGKRFFLVLDDVWDGD-YMKW----EPFYHCLKNGLPESKILVTTRKESVAFMMGS 337 (973)
Q Consensus 287 --~~kr~LlVlDdvw~~~-~~~w----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 337 (973)
..++-|+++|..-... ..+. ..+...+.. .|+.+|+||-..+.+..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3567899999984421 1111 122223332 37899999999988877553
No 391
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.044 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.++++|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988765
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.11 E-value=0.38 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|.++|.+|+||||+|.+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 393
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.10 E-value=0.43 Score=51.67 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
+...+-.++-+++||.--.. +......+...+..-..+..||+||.+...+.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 45556677789999987432 22223344444443333577999998876443
No 394
>PRK05973 replicative DNA helicase; Provisional
Probab=94.09 E-value=0.24 Score=50.81 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=32.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
.-.++.|.|.+|+|||++|.++..... + .-..+++++...+ ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHH
Confidence 456899999999999999998866422 2 2345677766554 3444444
No 395
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.09 E-value=0.1 Score=53.16 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHH
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIA 258 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (973)
+..++++.+.... ++..+|+|.|.||+||+||.-.+....+-+++=-.++=|.=|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4566777776543 367899999999999999998887643322222234444445555554444
No 396
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.52 Score=48.91 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhCCCCeeeC
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMGSTDIIPV 343 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 343 (973)
+...+-.+.-++++|+.-.. +....+.+...+..-..|..||++|.+...... +..++.+
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 44555556678899987432 233344455555443346678888887765543 3444443
No 397
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.07 E-value=0.23 Score=55.54 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=50.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCC-------CCCCCcHHHH---
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVS-------SSGLGEFQSL--- 278 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~--- 278 (973)
-..++|+|..|+|||||++.+.+.. +.+..+++.+.+ ...+.+.+.+....=... ..+.......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998732 344556665554 344445555443211000 1111112111
Q ss_pred --HHHHHHHh--cCCcEEEEEecCC
Q 002071 279 --LKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 279 --~~~l~~~l--~~kr~LlVlDdvw 299 (973)
.-.+.+++ +++++|+++||+-
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 22244555 5899999999993
No 398
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.07 E-value=0.33 Score=47.61 Aligned_cols=119 Identities=13% Similarity=0.040 Sum_probs=65.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc---cccHHHHHHHHH--HH--hcCCC-CCCCc-------
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE---AFEEFRIARAIV--EA--LDVSS-SGLGE------- 274 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~~--l~~~~-~~~~~------- 274 (973)
...|-|+|-.|-||||.|.-..- +..++=-.+..|-+-+ .......++.+- .. .+... ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46899999999999999977655 2222222333333211 223333333310 00 01100 00011
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCCC---CCccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 275 FQSLLKTISKSIT-GKRFFLVLDDVWD---GDYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 275 ~~~~~~~l~~~l~-~kr~LlVlDdvw~---~~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
.....+..++.+. ++-=++|||.+-. ......+.+.+.+.....+..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233344443 4556999999833 223456778888877777889999999764
No 399
>PRK04040 adenylate kinase; Provisional
Probab=94.06 E-value=0.04 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 400
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.05 E-value=0.097 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.02 E-value=0.21 Score=51.67 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=30.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
.-.++.|.|.+|.||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999999876531 1 23457788887544
No 402
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.29 Score=54.78 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|..|+|||||++.+++.. ..+.++++-+.+.. ...++..+.+..-+.. ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998732 22455556665544 3445554444332211 11111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCC
Q 002071 277 SLLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 277 ~~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
...-.+.+++ +++.+|+++||+-
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1122244555 5899999999993
No 403
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.99 E-value=0.18 Score=53.08 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=30.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
.-+++.|.|.+|+||||+|.++.... . ..=..++|++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecCC
Confidence 56799999999999999999976531 1 22346788887643
No 404
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.98 E-value=1 Score=46.93 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=67.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
-+.+.++|+.|+|||+-++.+++. ....+.+..++.+....+...+.......... ........+...+++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccC
Confidence 348999999999999999999873 23344556777788887777777776654332 2333445555666888
Q ss_pred cEEEEEecCCCCCccChhhHHhhh
Q 002071 290 RFFLVLDDVWDGDYMKWEPFYHCL 313 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~l~~~l 313 (973)
.-++++|....-.....+.++...
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHH
Confidence 889999998776555556665543
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.97 E-value=0.13 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|+|+|.+|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999976
No 406
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.96 E-value=0.083 Score=65.50 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=72.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccC---ceEEEEEeCccc----cHH--HHHHHHHHHhcCCCCCCCcHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKF---DKILWVCVSEAF----EEF--RIARAIVEALDVSSSGLGEFQSLLK 280 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~ 280 (973)
..-+.|+|.+|.||||+.+.+.-.. ..+.+ +..+++.+.... ... .+..-+...+..... ..+...
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhH
Confidence 4479999999999999998876431 12222 344455433111 111 122222222222211 111122
Q ss_pred HHHHHhcCCcEEEEEecCCCCCccChhhHH---hhhcCCCCCcEEEEEcCChHHHHHhCCCCeeeCCCCCHHHH
Q 002071 281 TISKSITGKRFFLVLDDVWDGDYMKWEPFY---HCLKNGLPESKILVTTRKESVAFMMGSTDIIPVQELAEEEC 351 (973)
Q Consensus 281 ~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~---~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~ 351 (973)
...+.++..++++++|.++......-.... ..+...-+.+.+|+|+|....-.....-..+++..+.++.-
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i 370 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQI 370 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHH
Confidence 225678889999999998764322211111 11122236789999998765544433334455555555443
No 407
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.6 Score=46.59 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcC-CCCCcEEEEEcCChHHHHHhCCCCee
Q 002071 279 LKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKN-GLPESKILVTTRKESVAFMMGSTDII 341 (973)
Q Consensus 279 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~ 341 (973)
...+.+.+-=++-+.|||..++- +.++...+...+.. ..+|+.+|+.|-.+.+........++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33444444456678999988653 22333333333332 23578889999999999887655443
No 408
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.93 E-value=0.049 Score=49.21 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=18.3
Q ss_pred EEEEeCCCChHHHHHHHHhcchhhhccCc
Q 002071 213 ISIVGMGGIGKTALAQLACNNDEVNRKFD 241 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 241 (973)
|-|.|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67899999999999999987 4555664
No 409
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.3 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999985
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.91 E-value=0.044 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999875
No 411
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.91 E-value=0.35 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 412
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.88 E-value=0.15 Score=56.21 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=48.0
Q ss_pred CceecchhHHHHHHHHhcCC--------CccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC---ceEEEEEeC-c
Q 002071 183 EEICGRVSEKNELISKLLCE--------SSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF---DKILWVCVS-E 250 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s-~ 250 (973)
..++|.++.++.+...+... .-...-..+-|.++|++|+|||++|+.+... ....| +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 35788888888876666532 0001123467899999999999999999873 33333 222222211 1
Q ss_pred cccHHHHHHHHHHHh
Q 002071 251 AFEEFRIARAIVEAL 265 (973)
Q Consensus 251 ~~~~~~~~~~i~~~l 265 (973)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 224556666655544
No 413
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.88 E-value=0.32 Score=52.43 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=49.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC-ccccHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS-EAFEEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|..|.|||||++.+.+... -+..+..-+. ...+..++.......-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987322 2333334443 2334555555444432211 11111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCC
Q 002071 277 SLLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 277 ~~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
...-.+.+++ ++|.+|+++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122234444 5899999999983
No 414
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.87 E-value=0.28 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999763
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.86 E-value=0.32 Score=51.19 Aligned_cols=128 Identities=14% Similarity=0.064 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC-
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS- 269 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~- 269 (973)
..+.++..|... ....-++|+|..|.|||||.+.+... + ......+++.-. .....+-..+++.....-.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGK-KVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCE-EeecchhHHHHHHHhccccc
Confidence 344555555432 24578999999999999999999873 2 222334444211 1100011123332222110
Q ss_pred C------C-CCcHHHHHHHHHHHh-cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 270 S------G-LGEFQSLLKTISKSI-TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 270 ~------~-~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
. + ..+... ..-+...+ .-.+=++++|.+-.. ..+..+...+ ..|..||+||-+..+..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 0 0 011111 11122222 246789999998542 2344444443 35778999998766644
No 416
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.84 E-value=0.084 Score=59.87 Aligned_cols=97 Identities=22% Similarity=0.139 Sum_probs=53.6
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEE-EEEeCccccHHHHHHHHHHHhcC----C
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKIL-WVCVSEAFEEFRIARAIVEALDV----S 268 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~----~ 268 (973)
++++.|..-. .-....|+|.+|+|||||++.+.+.. ...+-++.+ .+-|.+..... .+|-+.+.. .
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEE
Confidence 5666665543 23468899999999999999998832 122334443 33444433221 222333311 1
Q ss_pred CCCCCc-----HHHHHHHHHHHh--cCCcEEEEEecCC
Q 002071 269 SSGLGE-----FQSLLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 269 ~~~~~~-----~~~~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..+... ...+.-.+.+++ +++.+||++|++-
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111111 122223344555 6899999999983
No 417
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.82 E-value=0.085 Score=54.53 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHH
Q 002071 193 NELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVE 263 (973)
Q Consensus 193 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 263 (973)
.+++..+... .++..||+|.|.||+||+||.-.+.....-++|=-.++=|.-|.+++--.++-+=++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 4566666554 347889999999999999999888764333444334555566777766555544443
No 418
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.75 E-value=0.5 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 419
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.45 Score=49.47 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHHHhCCCCeeeC
Q 002071 281 TISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAFMMGSTDIIPV 343 (973)
Q Consensus 281 ~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 343 (973)
.+...+-.++-++++|+.... +......+...+.....|..||++|.+...... +...+.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 355566677889999987542 222334455555443236678888887766543 3444433
No 420
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.70 E-value=0.46 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998774
No 421
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.70 E-value=0.045 Score=53.72 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+|+|-||-|+||||||+...++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999873
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.69 E-value=0.29 Score=55.67 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=45.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (973)
..|++++|..|+||||++.+++.....+..-..+..|+... .....+-++..++..+.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 37999999999999999999986422222122345554432 12233334444555544322212222222222 23344
Q ss_pred CcEEEEEecCC
Q 002071 289 KRFFLVLDDVW 299 (973)
Q Consensus 289 kr~LlVlDdvw 299 (973)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 466777764
No 423
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.69 E-value=0.4 Score=54.02 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred eEEEEEEeCCCChHHHHH-HHHhcchhhh-----ccCceEEEEEeCccccHHHHHHHHHHHhc-CC-------CCCCCcH
Q 002071 210 LHIISIVGMGGIGKTALA-QLACNNDEVN-----RKFDKILWVCVSEAFEEFRIARAIVEALD-VS-------SSGLGEF 275 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~-------~~~~~~~ 275 (973)
-..++|+|-.|+|||||| -.+.|...+. ++-+.++++-+.+..+.-.-+.+.+++-+ .. ..+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 346899999999999997 5566643221 24457788888876544332334444333 11 1111111
Q ss_pred HH-----HHHHHHHHh--cCCcEEEEEecCC
Q 002071 276 QS-----LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 276 ~~-----~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
.+ ..-.+.+++ +++..|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11 112234444 5899999999994
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.3 Score=58.37 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE--EFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
..|+.++|+.|+||||++.+++........-..+..++.. .+. ..+.++...+.++.+.....+..++.+.+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 4799999999999999998887632211111244455433 232 334455555555544332234444443333 233
Q ss_pred CCcEEEEEecCC
Q 002071 288 GKRFFLVLDDVW 299 (973)
Q Consensus 288 ~kr~LlVlDdvw 299 (973)
++. +|++|-.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 333 55566553
No 425
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.67 E-value=0.15 Score=52.45 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHhhhchhhHHHHH
Q 002071 5 IVSPLLEMLISFAAEEMQQQAQLVTGVKKEVDKLTSNLRAIEAVLDDAEER-LVKDKAVRLWLEQLKYVSNDIEDVLDEW 83 (973)
Q Consensus 5 ~v~~~~~~l~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~ayd~ed~ld~~ 83 (973)
.|..++.+|-. ........+.-++.+++-++.+++.+|.||+...+. .........+..++-..||++|+++|.+
T Consensus 297 yVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 34455565555 222233445668899999999999999999987443 4444458889999999999999999976
Q ss_pred H
Q 002071 84 I 84 (973)
Q Consensus 84 ~ 84 (973)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 426
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.67 E-value=0.29 Score=51.54 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=47.9
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC----CC---CCcHHHHH
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS----SG---LGEFQSLL 279 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~---~~~~~~~~ 279 (973)
..+..+|.|+|.+|+|||||+..+.+. ...... ++.+ ..+..+..+ .+.++..+.+. .+ ..+...+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHH
Confidence 347899999999999999999998873 333332 2222 222222222 22234443321 10 12233344
Q ss_pred HHHHHHhcCCcEEEEEecCCC
Q 002071 280 KTISKSITGKRFFLVLDDVWD 300 (973)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdvw~ 300 (973)
..+...-....=++|++++-+
T Consensus 175 ~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHhhcCCcEEEEECCCC
Confidence 444444334446778999864
No 427
>PRK08149 ATP synthase SpaL; Validated
Probab=93.65 E-value=0.34 Score=54.20 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=50.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|..|+|||||++.+++.. .-+.++...+.. ..+..++..+........ ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4578999999999999999998732 223333344433 234455555555433221 11221111
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCC
Q 002071 277 SLLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 277 ~~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
...-.+.+++ ++|++||++||+-
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchH
Confidence 1222344454 5999999999993
No 428
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.65 E-value=0.12 Score=53.28 Aligned_cols=43 Identities=30% Similarity=0.304 Sum_probs=29.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF 252 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 252 (973)
.-.++.|.|.+|+|||++|.++.... .+..=+.++||+..++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH
Confidence 45699999999999999998876431 22213567888886654
No 429
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.64 E-value=0.13 Score=55.10 Aligned_cols=85 Identities=22% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTI 282 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (973)
+.-+++-|+|..|+||||||..+... ....-..++|+.....++..- ++.++.... .....++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999988863 444456789999988777643 334443211 012234444444
Q ss_pred HHHhc-CCcEEEEEecCC
Q 002071 283 SKSIT-GKRFFLVLDDVW 299 (973)
Q Consensus 283 ~~~l~-~kr~LlVlDdvw 299 (973)
...++ +.--++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 44454 445588889883
No 430
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.45 Score=50.69 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHHH
Q 002071 281 TISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVAF 333 (973)
Q Consensus 281 ~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~~ 333 (973)
.+...+-.+.-++++|+.... +......+...+..- ..|.-||++|.+...+.
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 355666677889999998543 222334455555432 23667888888766543
No 431
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.2 Score=54.13 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=52.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSG-----LGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 283 (973)
.-.+|.|-|.+|||||||.-++... ....- .++||+-.+...- .+--++.++....+ ..+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3568999999999999999999874 33333 7788876554332 23345566643322 234444333333
Q ss_pred HHhcCCcEEEEEecCC
Q 002071 284 KSITGKRFFLVLDDVW 299 (973)
Q Consensus 284 ~~l~~kr~LlVlDdvw 299 (973)
+.+.-++|+|-+.
T Consensus 166 ---~~~p~lvVIDSIQ 178 (456)
T COG1066 166 ---QEKPDLVVIDSIQ 178 (456)
T ss_pred ---hcCCCEEEEeccc
Confidence 3678899999884
No 432
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.60 E-value=0.5 Score=48.63 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=31.7
Q ss_pred HHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHH
Q 002071 281 TISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVA 332 (973)
Q Consensus 281 ~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~ 332 (973)
.+...+-.+.-++++|+--.. +......+...+... ..|..||++|.+....
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~ 176 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 355566677789999987432 223334455555432 2467788888877644
No 433
>PRK05922 type III secretion system ATPase; Validated
Probab=93.59 E-value=0.4 Score=53.66 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=48.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCC-------CCCCCcHH-----H
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVS-------SSGLGEFQ-----S 277 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 277 (973)
..++|+|..|+|||||.+.+.+.. ..+..+.+.+++ .....+.+.+........ ..+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998632 223334433333 223344444444333221 11111111 1
Q ss_pred HHHHHHHHh--cCCcEEEEEecCC
Q 002071 278 LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 278 ~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++++|+++||+-
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 222345555 5899999999993
No 434
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.53 E-value=0.34 Score=58.14 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=79.5
Q ss_pred ceecchhHHHHHHHHhc---CCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHH
Q 002071 184 EICGRVSEKNELISKLL---CESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (973)
++.|.+...+++.+.+. .... .+..-.+-|.++|++|.||||+|+.+.+. ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 56777666555544332 1110 00111234999999999999999999873 22222 2222221 1
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC----------ccChhhHHh-hh---cC--CCCCcE
Q 002071 258 ARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD----------YMKWEPFYH-CL---KN--GLPESK 321 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~w~~l~~-~l---~~--~~~gs~ 321 (973)
. ..... .....+...+...-...+.+|+||+++.-. ...+..... .| .. ...+.-
T Consensus 222 ~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 00000 011122222333334567899999986531 011222222 22 11 123445
Q ss_pred EEEEcCChHHHHH--hC---CCCeeeCCCCCHHHHHHHHHHHhc
Q 002071 322 ILVTTRKESVAFM--MG---STDIIPVQELAEEECWLLFNRIAF 360 (973)
Q Consensus 322 iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~ 360 (973)
||.||...+.... .. -...+.+..-+.++..+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5567766553221 11 245778888888888888887664
No 435
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.53 E-value=0.09 Score=52.28 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=57.0
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC---CCCCcHHHHHHHHHHHhc-
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS---SGLGEFQSLLKTISKSIT- 287 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l~- 287 (973)
++.|+|..|.||||+.+.+.-.. +-.+-...+|..-. .+ .....+...++... ........-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~---~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESA---EL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehhe---Ee-cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 47899999999999999987421 11111111111100 00 00001111111111 011122222223444444
Q ss_pred -CCcEEEEEecCCCCCccC-hhh----HHhhhcCCCCCcEEEEEcCChHHHHHhC
Q 002071 288 -GKRFFLVLDDVWDGDYMK-WEP----FYHCLKNGLPESKILVTTRKESVAFMMG 336 (973)
Q Consensus 288 -~kr~LlVlDdvw~~~~~~-w~~----l~~~l~~~~~gs~iivTtr~~~v~~~~~ 336 (973)
.++-|+++|..-...... -.. +...+.. ..++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 378999999985432111 111 2222222 23678999999988776543
No 436
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.53 E-value=0.35 Score=48.90 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChh-hHHhhhcCCC-C-CcEEEEEcCChHHHHHhCCCCeeeC
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWE-PFYHCLKNGL-P-ESKILVTTRKESVAFMMGSTDIIPV 343 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~-~l~~~l~~~~-~-gs~iivTtr~~~v~~~~~~~~~~~l 343 (973)
+...+..+.-++++|+.-.. +..... .+...+.... . |..||++|.+...... ...++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 45566677889999998543 222334 4555554432 2 5678888888776543 3344443
No 437
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.52 E-value=0.33 Score=54.55 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=51.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCC-------CCCCCcHHH----
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVS-------SSGLGEFQS---- 277 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (973)
.-..++|+|..|+|||||++.+...... -..+++..-.....+.++.+.+...-... ..+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 3458899999999999999999864221 12344444344445555555554432211 111111111
Q ss_pred -HHHHHHHHh--cCCcEEEEEecCC
Q 002071 278 -LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 278 -~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++.+|+++||+-
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 122344555 5899999999983
No 438
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.26 Score=54.70 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=37.9
Q ss_pred Cceecch---hHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcch
Q 002071 183 EEICGRV---SEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNND 234 (973)
Q Consensus 183 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (973)
.++-|-+ .|+++|++.|-.+.. -+..=++=|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3466765 577888888865431 123346678899999999999999998743
No 439
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.49 E-value=0.28 Score=50.67 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC--CCCcEEEEEcCChHHHHHh
Q 002071 276 QSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG--LPESKILVTTRKESVAFMM 335 (973)
Q Consensus 276 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 335 (973)
+...-.+...|..+.=+++||.--+. |...-..+...+..- ..|.-||+++-+-..|...
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 33344567778777888889975321 111112234444432 3567799999988777653
No 440
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.48 E-value=0.09 Score=56.27 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=44.4
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|+|.++.++++++.+-......+..-+|+.++|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999776554566789999999999999999998866
No 441
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.47 E-value=0.088 Score=55.68 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4678999999999999999999987 34556888999998765
No 442
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.45 E-value=0.046 Score=54.39 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.3
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 443
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.43 E-value=0.57 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 369999999999999999998763
No 444
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.41 E-value=0.28 Score=54.98 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=56.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|.+|+|||+|+.++.++.. +.+-+.++|+-+.+.. ...++.+++...-... ..+.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35789999999999999999877532 2334788888886654 4455666555432111 11111111
Q ss_pred HHHHHHHHHh---cCCcEEEEEecCC
Q 002071 277 SLLKTISKSI---TGKRFFLVLDDVW 299 (973)
Q Consensus 277 ~~~~~l~~~l---~~kr~LlVlDdvw 299 (973)
...-.+.+++ +++++|+++||+-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChH
Confidence 1222345565 4799999999993
No 445
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.41 E-value=0.26 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..|-+.|.+|+||||+|++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999876
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.41 E-value=0.58 Score=49.17 Aligned_cols=90 Identities=10% Similarity=0.199 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc-
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT- 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 287 (973)
..+++++|.+|+||||+++.+... ....=..+.+++..... ....-++.-++.++.+.....+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 469999999999999999988653 22221245556554221 22222233333333322222333444443333211
Q ss_pred CCcEEEEEecCCCC
Q 002071 288 GKRFFLVLDDVWDG 301 (973)
Q Consensus 288 ~kr~LlVlDdvw~~ 301 (973)
++.=++++|..-..
T Consensus 153 ~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 153 ARVDYILIDTAGKN 166 (270)
T ss_pred CCCCEEEEECCCCC
Confidence 34567888887543
No 447
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.40 E-value=0.91 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEeCCCChHHHHHHHHhcc
Q 002071 213 ISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (973)
+++.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
No 448
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.40 E-value=0.11 Score=48.68 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=27.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE 250 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 250 (973)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999852 234555555665554
No 449
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.38 E-value=0.12 Score=56.80 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=60.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhh----hccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEV----NRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK 284 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 284 (973)
..+=+-|+|..|.|||.|.-.+|+...+ +-||.. =+.++.+.|-+.-+ .... ...+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~----------Fm~~vh~~l~~~~~----~~~~----l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE----------FMLDVHSRLHQLRG----QDDP----LPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccH----------HHHHHHHHHHHHhC----CCcc----HHHHHH
Confidence 4677999999999999999999986332 334432 12233333333221 1112 233445
Q ss_pred HhcCCcEEEEEecCCCCCccChhhHHhhhcCC-CCCcEEEEEcCChHHH
Q 002071 285 SITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG-LPESKILVTTRKESVA 332 (973)
Q Consensus 285 ~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~ 332 (973)
.+.++..||.||.+.-.+..+-..+...|..- ..|. |||+|.|..-.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPE 170 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChH
Confidence 56667779999998766544433344444332 3444 55666554433
No 450
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.37 E-value=0.37 Score=48.30 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=28.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccC--------ceEEEEEeCccc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKF--------DKILWVCVSEAF 252 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~~ 252 (973)
.++.|+|.+|+||||++..+.........| ..++|+....+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 388999999999999998887643322222 368888877664
No 451
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.37 E-value=0.19 Score=52.29 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=49.4
Q ss_pred eEEEEEEeCCCChHHHHH-HHHhcchhhhccCceE-EEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHHH--
Q 002071 210 LHIISIVGMGGIGKTALA-QLACNNDEVNRKFDKI-LWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQS-- 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 277 (973)
-..++|+|.+|+|||+|| ..+.+. .+-+.+ +++-+.+.. +..++..++...-... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 346899999999999996 666552 123444 666666654 4555555555432111 111111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecCC
Q 002071 278 ---LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 278 ---~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++..|+|+||+-
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 112233444 5899999999994
No 452
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.34 E-value=0.059 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+++|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 453
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.32 E-value=0.049 Score=54.94 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999866
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.31 E-value=0.081 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999863
No 455
>PRK15453 phosphoribulokinase; Provisional
Probab=93.30 E-value=0.41 Score=49.91 Aligned_cols=78 Identities=18% Similarity=0.105 Sum_probs=42.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc--cHHHHHHHHHH--Hhc--CCC--CCCCcHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF--EEFRIARAIVE--ALD--VSS--SGLGEFQSLLK 280 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~~ 280 (973)
...+|+|.|-+|+||||+|+.+.+. .+..=...+.++...-. +....-..+.. .-+ ... ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4579999999999999999988752 21111123344333221 33222222211 111 112 45566777777
Q ss_pred HHHHHhcC
Q 002071 281 TISKSITG 288 (973)
Q Consensus 281 ~l~~~l~~ 288 (973)
.++.+.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776553
No 456
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.30 E-value=0.17 Score=55.85 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=37.0
Q ss_pred CceecchhHHHHHHHHhcCC--------CccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 183 EEICGRVSEKNELISKLLCE--------SSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..++|.+..++.+...+... .....-..+.|.++|++|+||||+|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889998888888777531 0000112467899999999999999999773
No 457
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.29 E-value=0.18 Score=58.96 Aligned_cols=135 Identities=12% Similarity=0.053 Sum_probs=71.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|....+.++++.+..-.. .-..|.|+|..|.||+++|+.+.+.. .+ .-...+.++++.-.+ ..+...+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~~-~~~e~elF 276 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIPD-DVVESELF 276 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCCH-HHHHHHhc
Confidence 4689999888888776643221 23348899999999999999986521 11 112334555544321 11111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCCh
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRKE 329 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~~ 329 (973)
-...+...+... .....+. +...=.|+||+|+.........+...+..+. ...|||.||...
T Consensus 277 G~~~~~~~~~~~--~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 277 GHAPGAYPNALE--GKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CCCCCCcCCccc--CCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 100000000000 0000010 1223347899998876666667777775532 124788877654
No 458
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.27 E-value=0.36 Score=53.99 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-ccHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-FEEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|..|+|||||++.+.+.. ..+..+.+.+.+. .+..++...+...-... ..+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999888632 1234444555543 33444444443331111 11221111
Q ss_pred HHHHHHHHHh--cCCcEEEEEecC
Q 002071 277 SLLKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 277 ~~~~~l~~~l--~~kr~LlVlDdv 298 (973)
...-.+.+++ ++++.|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122244555 589999999999
No 459
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.27 E-value=0.052 Score=53.58 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 460
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=0.93 Score=47.91 Aligned_cols=131 Identities=15% Similarity=0.029 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh------------hccCceEEEEEeCccccHHHHH
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV------------NRKFDKILWVCVSEAFEEFRIA 258 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~~F~~~~wv~~s~~~~~~~~~ 258 (973)
..+++...+.. +.-.+-.-++|+.|+||+++|..+...--- ..|-|..+.......
T Consensus 5 ~~~~L~~~i~~-----~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------- 72 (290)
T PRK05917 5 AWEALIQRVRD-----QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------- 72 (290)
T ss_pred HHHHHHHHHHc-----CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-------
Confidence 34555555533 234667889999999999999887652110 012221111111000
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-hHHH
Q 002071 259 RAIVEALDVSSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-ESVA 332 (973)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-~~v~ 332 (973)
.....++.. .+.+.+ .+++-++|+|++...+.+.++.+...+..-..++.+|++|.+ ..+.
T Consensus 73 ------------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 73 ------------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred ------------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc
Confidence 011233322 222222 366678899999988888899998888766666776666665 4443
Q ss_pred HH-hCCCCeeeCCCC
Q 002071 333 FM-MGSTDIIPVQEL 346 (973)
Q Consensus 333 ~~-~~~~~~~~l~~L 346 (973)
.. ..-+..+.+.++
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 22 233456666654
No 461
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.19 E-value=0.063 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 462
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.16 E-value=0.47 Score=53.11 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=52.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHHH----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQS---- 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (973)
-..++|+|..|+|||||.+.+++.. .-+.++++-+.+.. .+.++....+..-+.. ..+......
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 4589999999999999999998742 23567777776554 3444443333221111 111111111
Q ss_pred -HHHHHHHHh--cCCcEEEEEecCC
Q 002071 278 -LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 278 -~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++++|+++||+-
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 112244555 6999999999993
No 463
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.14 E-value=0.51 Score=53.85 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=47.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (973)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+... .+. .-++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~~--qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESAS--QIK-LRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccHH--HHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 3569999999999999999998774 222234678887655432 222 22444443211 1123444433332
Q ss_pred HHhcCCcEEEEEecCC
Q 002071 284 KSITGKRFFLVLDDVW 299 (973)
Q Consensus 284 ~~l~~kr~LlVlDdvw 299 (973)
+ .+.-++|+|.+.
T Consensus 154 ~---~~~~lVVIDSIq 166 (446)
T PRK11823 154 E---EKPDLVVIDSIQ 166 (446)
T ss_pred h---hCCCEEEEechh
Confidence 2 344577788763
No 464
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.11 E-value=0.33 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999874
No 465
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.10 E-value=0.76 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 466
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.09 E-value=0.5 Score=55.89 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=60.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccC---ceEEEEEeCccccHHHHHHHHHHHhcCCC---C---CC-CcHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKF---DKILWVCVSEAFEEFRIARAIVEALDVSS---S---GL-GEFQSLL 279 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~---~~-~~~~~~~ 279 (973)
.++..|.|.+|.||||+++.+... ..... ...+.+..........+...+...+..-. . .. .....+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 468999999999999999888763 21111 24566666655555555555544332110 0 00 0111221
Q ss_pred HHHHHHhcC--------Cc---EEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCC
Q 002071 280 KTISKSITG--------KR---FFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRK 328 (973)
Q Consensus 280 ~~l~~~l~~--------kr---~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~ 328 (973)
+.+.....+ .. =++|+|.+...+......+...++ +++|+|+---.
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~ 301 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDR 301 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecch
Confidence 111111111 11 289999986554333344444444 56888887543
No 467
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.09 E-value=0.06 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.0
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
++.++|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 468
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.08 E-value=0.39 Score=53.68 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=56.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhc--cCc---------eEEEEEeCccccHHHHHHHHHHHhc-CC-------CC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNR--KFD---------KILWVCVSEAFEEFRIARAIVEALD-VS-------SS 270 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~-------~~ 270 (973)
-..++|+|-+|+|||||+.++.+...... -.| .++++-+.+.....+.+.+.+..-+ .. ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 34689999999999999999887533100 022 6677778887666666666665544 21 11
Q ss_pred CCCcHHH-----HHHHHHHHhc---CCcEEEEEecCC
Q 002071 271 GLGEFQS-----LLKTISKSIT---GKRFFLVLDDVW 299 (973)
Q Consensus 271 ~~~~~~~-----~~~~l~~~l~---~kr~LlVlDdvw 299 (973)
+...... ..-.+.++++ ++.+|+++||+-
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 2222221 1222455554 799999999993
No 469
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.07 E-value=0.48 Score=51.25 Aligned_cols=48 Identities=27% Similarity=0.162 Sum_probs=31.5
Q ss_pred eeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHH
Q 002071 340 IIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLT 388 (973)
Q Consensus 340 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 388 (973)
++++++++.+|+..++.-..-.+--.. ...-+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999987653322111 012244556667777888853
No 470
>PRK13949 shikimate kinase; Provisional
Probab=93.06 E-value=0.064 Score=52.33 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-|.|+|++|+||||+++.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 471
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.06 E-value=0.23 Score=55.57 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=51.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCC-------CCCCCc-----HHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVS-------SSGLGE-----FQS 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 277 (973)
-..++|+|..|+|||||++.++.... ....++...-.+.....+..+..+..-+.. ..+... ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 35789999999999999999987422 122333332233356666666555443221 111111 112
Q ss_pred HHHHHHHHh--cCCcEEEEEecCCC
Q 002071 278 LLKTISKSI--TGKRFFLVLDDVWD 300 (973)
Q Consensus 278 ~~~~l~~~l--~~kr~LlVlDdvw~ 300 (973)
....+.+++ +++..||++||+-.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHH
Confidence 223344555 58999999999954
No 472
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.05 E-value=0.15 Score=50.86 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=28.9
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.|+|+|-||+||||+|...... -...+-..+.=|...+++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChH
Confidence 5899999999999999885442 222331344556666666654
No 473
>PRK06217 hypothetical protein; Validated
Probab=93.03 E-value=0.064 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 474
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=1.6 Score=49.71 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=59.2
Q ss_pred CceecchhHHHHHHHHhcCCC---c---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCES---S---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~---~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.++=|.+....++.+++..-. . -+-...+=|-++|++|.|||.||+.+++.. .-. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch-----
Confidence 457788888877777664321 0 022345668899999999999999999842 222 2333322
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCC
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWD 300 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 300 (973)
+|+....+ .+.+.+.+...+.-+.-.+++++|+++-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 22222222 2223333334445567799999999954
No 475
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.01 E-value=0.5 Score=53.12 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=49.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-ccHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-FEEFRIARAIVEALDVS-------SSGLGEFQ----- 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (973)
-..++|+|..|+|||||++.+.... ..+.++...+... .+..++...+...-... ..+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 3569999999999999999987631 2234344434333 24444444444332221 11121111
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCC
Q 002071 277 SLLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 277 ~~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
...-.+.+++ +++++|+++||+-
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchh
Confidence 1122344555 6899999999993
No 476
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=1.2 Score=52.25 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=72.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+.+-++|++|.|||.||+++++ ..+..| +.+... +. ....- ......+.+.....-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~-~l-------~sk~v-----Gesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS-EL-------LSKWV-----GESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH-HH-------hcccc-----chHHHHHHHHHHHHHc
Confidence 4566899999999999999999998 233333 222221 11 00000 0111122222333335
Q ss_pred CCcEEEEEecCCCC-----Cc------cChhhHHhhhcCCC--CCcEEEEEcCChHHHHH--h---CCCCeeeCCCCCHH
Q 002071 288 GKRFFLVLDDVWDG-----DY------MKWEPFYHCLKNGL--PESKILVTTRKESVAFM--M---GSTDIIPVQELAEE 349 (973)
Q Consensus 288 ~kr~LlVlDdvw~~-----~~------~~w~~l~~~l~~~~--~gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~ 349 (973)
.....|.+|.++.- .. .....+...+..-. .+..||-||........ . .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 77899999999431 10 01122222232112 33334444544332211 1 11457888999999
Q ss_pred HHHHHHHHHhcc
Q 002071 350 ECWLLFNRIAFF 361 (973)
Q Consensus 350 ~~~~lf~~~~~~ 361 (973)
+..+.|..+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.00 E-value=0.53 Score=53.77 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=30.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
.-.++.|.|.+|+|||||+.++.... ...-..++|++..+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES 133 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC
Confidence 45799999999999999999986632 222235788876554
No 478
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.97 E-value=1.2 Score=45.13 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHhcCCcEEEEEecCCCC-CccChhhHHh-hhcC-CCCCcEEEEEcCChHHHHH
Q 002071 280 KTISKSITGKRFFLVLDDVWDG-DYMKWEPFYH-CLKN-GLPESKILVTTRKESVAFM 334 (973)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~-~l~~-~~~gs~iivTtr~~~v~~~ 334 (973)
-.+.+.+-.++-++++|+--.. +....+.+.. .+.. ...|..||++|.+......
T Consensus 136 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 3456667778889999987432 2222344544 2332 2346778888887765543
No 479
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.97 E-value=0.05 Score=32.55 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=14.4
Q ss_pred cccEEecCCCCCCcccCccccC
Q 002071 650 NLQKLDVSDCYGLKELPQGIGK 671 (973)
Q Consensus 650 ~Lq~L~L~~~~~~~~lp~~i~~ 671 (973)
+|++|||++|. +..+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 47778888775 6677776554
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.96 E-value=0.58 Score=54.26 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
..-.++.|.|.+|+|||||+.++... ....-+.+++++..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES 302 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC
Confidence 35679999999999999999998764 2233356777776554
No 481
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.95 E-value=0.81 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|.|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 482
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.93 E-value=0.07 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 483
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.89 E-value=0.98 Score=51.80 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=62.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEE-------E----eCccccHHH------------------HHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWV-------C----VSEAFEEFR------------------IARA 260 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~----~s~~~~~~~------------------~~~~ 260 (973)
-.+++|+|..|+|||||++.+..-.. ...+.+++ . .....+..+ ....
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 35899999999999999999976311 11122221 0 111111111 1122
Q ss_pred HHHHhcCCC-----CCCCcHHHH-HHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC-CCCcEEEEEcCChHHH
Q 002071 261 IVEALDVSS-----SGLGEFQSL-LKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG-LPESKILVTTRKESVA 332 (973)
Q Consensus 261 i~~~l~~~~-----~~~~~~~~~-~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~-~~gs~iivTtr~~~v~ 332 (973)
+++.++... ...-+.++. .-.|...+-..+-+++||..-.. +......+...+... ..|..||++|.+....
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 333333321 111222222 22355566667789999987442 222233444444332 3466788888886654
Q ss_pred HH
Q 002071 333 FM 334 (973)
Q Consensus 333 ~~ 334 (973)
..
T Consensus 207 ~~ 208 (549)
T PRK13545 207 KS 208 (549)
T ss_pred HH
Confidence 43
No 484
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.86 E-value=0.62 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 485
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.85 E-value=0.72 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~G 48 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998865
No 486
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.84 E-value=0.33 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.7
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999998743
No 487
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.84 E-value=0.072 Score=51.74 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEeCCCChHHHHHHHHhcc
Q 002071 213 ISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (973)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 488
>PF13245 AAA_19: Part of AAA domain
Probab=92.83 E-value=0.21 Score=41.07 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=17.1
Q ss_pred eEEEEEEeCCCChHHHH-HHHHhc
Q 002071 210 LHIISIVGMGGIGKTAL-AQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtL-a~~v~~ 232 (973)
.+++.|.|.+|.|||++ ++.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 45788899999999955 444444
No 489
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.83 E-value=0.23 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHh
Q 002071 210 LHIISIVGMGGIGKTALAQLAC 231 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~ 231 (973)
-+++.|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4799999999999999999987
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.83 E-value=0.077 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
++|+|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 491
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.83 E-value=0.066 Score=50.91 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=19.4
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 492
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.93 Score=46.86 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 282 ISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 282 l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
|...+-.++-++++|+-... +....+.+...+..-..|..||++|.+.....
T Consensus 150 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 150 IARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 45556667789999987532 22233445455543334667888888776654
No 493
>PRK13947 shikimate kinase; Provisional
Probab=92.80 E-value=0.073 Score=52.25 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 494
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.78 E-value=0.12 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 495
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.76 E-value=0.082 Score=50.09 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=18.3
Q ss_pred EEEEEeCCCChHHHHHHHHh
Q 002071 212 IISIVGMGGIGKTALAQLAC 231 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~ 231 (973)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999885
No 496
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.72 E-value=0.56 Score=52.66 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=54.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC-------CCCCCcHHH----
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS-------SSGLGEFQS---- 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (973)
-..++|+|.+|+|||||+.++..+.. ..+=+.++++-+.+.. .+.+++.++...=... ..+......
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999876422 1222467777776543 4566666664432111 111211111
Q ss_pred -HHHHHHHHh---cCCcEEEEEecCC
Q 002071 278 -LLKTISKSI---TGKRFFLVLDDVW 299 (973)
Q Consensus 278 -~~~~l~~~l---~~kr~LlVlDdvw 299 (973)
..-.+.+++ +++.+||++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchh
Confidence 222355666 5789999999993
No 497
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.70 E-value=0.27 Score=50.87 Aligned_cols=77 Identities=22% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc--cHHHHHHHHHHHh----cCCC--CCCCcHHHHHHHHH
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF--EEFRIARAIVEAL----DVSS--SGLGEFQSLLKTIS 283 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 283 (973)
+|+|.|..|+||||+|+.+... .+..=..++.++...-. +....-..+.... .... ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988763 22111123444332221 2222222222221 1122 45567777777777
Q ss_pred HHhcCCc
Q 002071 284 KSITGKR 290 (973)
Q Consensus 284 ~~l~~kr 290 (973)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766553
No 498
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.70 E-value=0.42 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEEeCCCChHHHHHHHHhcc
Q 002071 213 ISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (973)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999775
No 499
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.68 E-value=0.41 Score=57.43 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=57.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTI 282 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (973)
+.-+++-|+|.+|+||||||.+++.. ....-..++|+...+.++.. .+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35688999999999999999876553 22233568999988877743 6666665421 122334455555
Q ss_pred HHHhc-CCcEEEEEecCC
Q 002071 283 SKSIT-GKRFFLVLDDVW 299 (973)
Q Consensus 283 ~~~l~-~kr~LlVlDdvw 299 (973)
...++ ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55553 466789999985
No 500
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.68 E-value=0.7 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
Done!